Query 019825
Match_columns 335
No_of_seqs 155 out of 1927
Neff 8.7
Searched_HMMs 13730
Date Mon Mar 25 07:39:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019825.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019825hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1iwga8 f.35.1.1 (A:513-566,A: 58.0 38 0.0028 26.2 10.1 29 262-290 95-123 (222)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 47.9 69 0.005 26.2 11.8 18 166-183 69-86 (447)
3 d1pw4a_ f.38.1.1 (A:) Glycerol 37.0 1E+02 0.0074 25.1 20.5 14 16-29 115-128 (447)
4 d2e74g1 f.23.26.1 (G:9-35) Pet 22.9 43 0.0031 16.2 2.8 18 157-174 3-20 (27)
5 d1iwga7 f.35.1.1 (A:7-37,A:331 22.1 67 0.0049 24.1 5.5 48 245-292 60-107 (199)
6 d1pv7a_ f.38.1.2 (A:) Lactose 16.4 2.3E+02 0.016 21.9 9.9 10 14-23 39-48 (417)
7 d1pv7a_ f.38.1.2 (A:) Lactose 4.5 6.7E+02 0.048 18.7 7.9 13 259-271 149-161 (417)
8 d1q90r_ f.23.12.1 (R:) ISP sub 3.9 3.4E+02 0.025 14.4 4.3 34 37-70 5-38 (39)
9 d2axtt1 f.23.34.1 (T:1-30) Pho 3.8 2.8E+02 0.021 13.4 3.5 13 86-98 16-28 (30)
10 d1v54m_ f.23.7.1 (M:) Mitochon 3.4 1.5E+02 0.011 16.4 0.5 22 94-120 7-28 (43)
No 1
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=58.00 E-value=38 Score=26.22 Aligned_cols=29 Identities=14% Similarity=0.077 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhcCccchhHHHHHHHHHHh
Q 019825 262 IMAAMFDIPLLHERLHIGSLLGSITVIIG 290 (335)
Q Consensus 262 v~~~l~~~~~~ge~~~~~~~~G~~lii~g 290 (335)
+.+.+++..+.+..++....+|.++.++-
T Consensus 95 ~~~~~~~l~~~g~~~~~~~~~g~i~l~Gi 123 (222)
T d1iwga8 95 VIGALLAATFRGLTNDVYFQVGLLTTIGL 123 (222)
T ss_dssp HHHHHHHHHHTTCCBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCchhhhhcccccchhhh
Confidence 44455666778999999998887775543
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=47.91 E-value=69 Score=26.23 Aligned_cols=18 Identities=11% Similarity=0.054 Sum_probs=8.5
Q ss_pred HHHHHhHHHHHHHhhccC
Q 019825 166 TLLWASWFPIQSYIGKRY 183 (335)
Q Consensus 166 a~~~a~~~~~~k~~~~~~ 183 (335)
.+.+++.....-++.+++
T Consensus 69 ~~~~~~~~~~~G~l~Dr~ 86 (447)
T d1pw4a_ 69 SIAYGFSKFIMGSVSDRS 86 (447)
T ss_dssp HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 344444445555544444
No 3
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=36.99 E-value=1e+02 Score=25.05 Aligned_cols=14 Identities=14% Similarity=0.066 Sum_probs=9.1
Q ss_pred CchHHHHHHHHHHH
Q 019825 16 PHCQCFIFRHLSYK 29 (335)
Q Consensus 16 ~p~~~~~~R~~~a~ 29 (335)
+...+...|.+.+.
T Consensus 115 ~~~~~~~~~~~~g~ 128 (447)
T d1pw4a_ 115 SIAVMFVLLFLCGW 128 (447)
T ss_dssp SSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 44566677777665
No 4
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=22.91 E-value=43 Score=16.22 Aligned_cols=18 Identities=28% Similarity=0.586 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHhHHH
Q 019825 157 FGTIALTVGTLLWASWFP 174 (335)
Q Consensus 157 ~G~~~~l~aa~~~a~~~~ 174 (335)
+|.+.+.++.+.|+.|.-
T Consensus 3 lgli~~tl~glf~aayqq 20 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQQ 20 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHHH
Confidence 688888899999988753
No 5
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=22.09 E-value=67 Score=24.13 Aligned_cols=48 Identities=8% Similarity=0.101 Sum_probs=30.0
Q ss_pred hhccCceehhhhhhHHHHHHHHHHHHHhcCccchhHHHHHHHHHHhhh
Q 019825 245 VKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLY 292 (335)
Q Consensus 245 ~~~~~~~~~s~~~~~~pv~~~l~~~~~~ge~~~~~~~~G~~lii~g~~ 292 (335)
++...+.....+...-.+...+....++|..++.....+..+.++..+
T Consensus 60 ~rs~~~~li~~~~i~~~i~~~~~~m~~~g~~l~~~s~~~~~i~igi~v 107 (199)
T d1iwga7 60 LQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLV 107 (199)
T ss_dssp CCCTTTTTHHHHHHHHHHHHHHHHHHTTTCCSCHHHHHHHHHHHHHHH
T ss_pred HhhhhhhheeccccchhhHHHHHHhhcCCCchHHHHHHHHHHHHHHhc
Confidence 344444445455555555555555667888988888877777665544
No 6
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=16.42 E-value=2.3e+02 Score=21.92 Aligned_cols=10 Identities=10% Similarity=0.122 Sum_probs=4.9
Q ss_pred CCCchHHHHH
Q 019825 14 AVPHCQCFIF 23 (335)
Q Consensus 14 ~~~p~~~~~~ 23 (335)
++++.++...
T Consensus 39 g~s~~~~g~i 48 (417)
T d1pv7a_ 39 HISKSDTGII 48 (417)
T ss_dssp CCCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 4555554443
No 7
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=4.50 E-value=6.7e+02 Score=18.68 Aligned_cols=13 Identities=8% Similarity=-0.174 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 019825 259 LVQIMAAMFDIPL 271 (335)
Q Consensus 259 ~~pv~~~l~~~~~ 271 (335)
...+.+..++..+
T Consensus 149 ~~~~~~~~~~~~l 161 (417)
T d1pv7a_ 149 VGWALGASIVGIM 161 (417)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ccccccccccccc
Confidence 3333444443333
No 8
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=3.90 E-value=3.4e+02 Score=14.44 Aligned_cols=34 Identities=18% Similarity=0.325 Sum_probs=21.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 019825 37 PKLTLRILFCLFFSAIVGTSLTQYFFLLGIQYTS 70 (335)
Q Consensus 37 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~ 70 (335)
+...+|+..-+++.|.........++=++.-+++
T Consensus 5 pDMgrR~~MNLll~G~~~~~~~g~l~py~~fFvP 38 (39)
T d1q90r_ 5 PDMNKRNIMNLILAGGAGLPITTLALGYGAFFVP 38 (39)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred cchhHHHHHHHHHHhccchhhhhhccceeEEecC
Confidence 3345677888888887776565555555544443
No 9
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.84 E-value=2.8e+02 Score=13.36 Aligned_cols=13 Identities=15% Similarity=-0.044 Sum_probs=7.4
Q ss_pred HHHHHHhcccccc
Q 019825 86 FVIALPFGLETVD 98 (335)
Q Consensus 86 ~lla~~~~~e~~~ 98 (335)
.++-.++++|+++
T Consensus 16 lfffaiffreppr 28 (30)
T d2axtt1 16 LFFFAIFFREPPR 28 (30)
T ss_dssp HHHHHHHTSCCCC
T ss_pred HHHHHHHhcCCCC
Confidence 3334456777765
No 10
>d1v54m_ f.23.7.1 (M:) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.44 E-value=1.5e+02 Score=16.43 Aligned_cols=22 Identities=18% Similarity=0.161 Sum_probs=13.0
Q ss_pred cccccccccCCcceeehHhHHHHhHHH
Q 019825 94 LETVDIKGISGKAKVVGTLVCIGGAML 120 (335)
Q Consensus 94 ~e~~~~~~~~~~~k~~g~~l~~~Gv~l 120 (335)
+|+++..+ +.+|+.+++++.+.
T Consensus 7 ~~~ls~~E-----~aigLt~~f~~~L~ 28 (43)
T d1v54m_ 7 KTPTSPKE-----QAIGLSVTFLSFLL 28 (43)
T ss_dssp SSCCCHHH-----HHHHHHHHHHHHHH
T ss_pred CCCCCHHH-----HHHHHHHHHHHHHc
Confidence 45555554 56777776666554
Done!