BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019826
         (335 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3G17|A Chain A, Structure Of Putative 2-Dehydropantoate 2-Reductase From
           Staphylococcus Aureus
 pdb|3G17|B Chain B, Structure Of Putative 2-Dehydropantoate 2-Reductase From
           Staphylococcus Aureus
 pdb|3G17|C Chain C, Structure Of Putative 2-Dehydropantoate 2-Reductase From
           Staphylococcus Aureus
 pdb|3G17|D Chain D, Structure Of Putative 2-Dehydropantoate 2-Reductase From
           Staphylococcus Aureus
 pdb|3G17|E Chain E, Structure Of Putative 2-Dehydropantoate 2-Reductase From
           Staphylococcus Aureus
 pdb|3G17|F Chain F, Structure Of Putative 2-Dehydropantoate 2-Reductase From
           Staphylococcus Aureus
 pdb|3G17|G Chain G, Structure Of Putative 2-Dehydropantoate 2-Reductase From
           Staphylococcus Aureus
 pdb|3G17|H Chain H, Structure Of Putative 2-Dehydropantoate 2-Reductase From
           Staphylococcus Aureus
          Length = 294

 Score = 32.3 bits (72), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 18/81 (22%)

Query: 144 LIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLI-DFRHYS 202
           LI+L+  G G    +L  I F+N+             CQ +V ++  K   ++  FR Y 
Sbjct: 91  LIILAQNGYG----QLEHIPFKNV-------------CQAVVYISGQKKGDVVTHFRDYQ 133

Query: 203 IRLQPVGVSRRLRKFVQSHQV 223
           +R+Q   ++R+ R  VQ  Q+
Sbjct: 134 LRIQDNALTRQFRDLVQDSQI 154


>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
           Blueprint For Antibiotic Engineering
 pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
           Blueprint For Antibiotic Engineering
          Length = 424

 Score = 28.9 bits (63), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 10/83 (12%)

Query: 218 VQSHQ-VPDLRSLQDVSDFVTKAGYGSESEADDEAATVTLVSDLGRVNRASTKSAVKLQE 276
           V+ HQ VP L  L   S F+T AG GS  EA   A  +  V  +       T +A ++ E
Sbjct: 307 VEVHQWVPQLDILTKASAFITHAGMGSTMEALSNAVPMVAVPQIAE----QTMNAERIVE 362

Query: 277 IG-----PRMTLQLIKVEEGLCS 294
           +G     PR  +   K+ E + +
Sbjct: 363 LGLGRHIPRDQVTAEKLREAVLA 385


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.136    0.389 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,773,412
Number of Sequences: 62578
Number of extensions: 271226
Number of successful extensions: 476
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 476
Number of HSP's gapped (non-prelim): 2
length of query: 335
length of database: 14,973,337
effective HSP length: 99
effective length of query: 236
effective length of database: 8,778,115
effective search space: 2071635140
effective search space used: 2071635140
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)