Query 019826
Match_columns 335
No_of_seqs 128 out of 685
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 04:50:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019826.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019826hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2963 RNA-binding protein re 100.0 2.7E-81 5.8E-86 593.5 24.2 293 17-309 10-320 (405)
2 KOG2971 RNA-binding protein re 100.0 2.5E-45 5.3E-50 336.0 14.8 201 33-307 50-255 (299)
3 COG5154 BRX1 RNA-binding prote 100.0 8.3E-43 1.8E-47 312.4 14.0 208 31-307 29-241 (283)
4 PF04427 Brix: Brix domain; I 100.0 9.4E-42 2E-46 305.7 8.0 157 37-203 1-160 (191)
5 KOG2780 Ribosome biogenesis pr 100.0 2E-36 4.3E-41 279.5 15.9 196 31-305 95-291 (302)
6 KOG2781 U3 small nucleolar rib 100.0 1.1E-35 2.4E-40 271.6 19.3 200 28-308 78-283 (290)
7 smart00879 Brix Brix domain. T 100.0 2.5E-33 5.4E-38 247.7 19.3 159 36-205 1-162 (180)
8 KOG3031 Protein required for b 99.9 3.2E-26 6.9E-31 213.2 8.6 183 15-209 10-204 (307)
9 COG2136 IMP4 Predicted exosome 99.8 2.2E-18 4.7E-23 155.7 16.4 181 32-292 1-188 (191)
10 PRK03972 ribosomal biogenesis 99.6 1.5E-15 3.3E-20 138.3 13.0 125 35-170 2-132 (208)
11 COG5106 RPF2 Uncharacterized c 99.6 2.4E-15 5.3E-20 138.2 5.7 177 17-204 12-206 (316)
12 PRK00933 ribosomal biogenesis 94.8 0.18 4E-06 45.0 8.7 74 36-116 2-76 (165)
13 PF03066 Nucleoplasmin: Nucleo 55.8 10 0.00022 33.2 2.7 18 269-286 76-93 (149)
14 PRK03972 ribosomal biogenesis 36.1 2.1E+02 0.0046 26.5 8.2 81 28-117 101-188 (208)
15 PF15210 SFTA2: Surfactant-ass 25.7 34 0.00074 25.1 0.9 21 277-299 1-21 (59)
16 PF05508 Ran-binding: RanGTP-b 25.7 42 0.00091 32.9 1.8 37 274-310 186-229 (302)
17 TIGR02433 lysidine_TilS_C tRNA 21.0 89 0.0019 21.1 2.3 15 210-224 19-33 (47)
18 PF01206 TusA: Sulfurtransfera 20.3 1.9E+02 0.004 21.1 4.1 53 42-96 9-61 (70)
No 1
>KOG2963 consensus RNA-binding protein required for 60S ribosomal subunit biogenesis [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.7e-81 Score=593.45 Aligned_cols=293 Identities=53% Similarity=0.869 Sum_probs=272.6
Q ss_pred hhccCCCCCCCCCCCCCcEEEEccCCCChhHHHHHHHHhhccCCccccccccccccchhhHHhhcccCCCcEEEEEEeeC
Q 019826 17 VKKKQPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTE 96 (335)
Q Consensus 17 ~k~~~~~~~~~~~~~~Pk~lV~~rg~~s~~v~~L~kDLr~lm~P~t~~~lk~~kkn~lkdf~~~a~~~~~t~livfs~~k 96 (335)
.+.......+.++...|.++|+++|-++..+++|..|||+||.||||.+|+++|.|+||||+.+|+++|+|||++|+.+.
T Consensus 10 ~~aq~~~~~e~~i~~~ph~~v~~rgla~~~~~~L~~DlR~iMeP~TA~~LkerK~N~iKDfv~~~gplGVTH~l~lskt~ 89 (405)
T KOG2963|consen 10 THAQFTPEQEIEIAKSPHIRVGHRGLAGRSLKQLTLDLRRIMEPHTASNLKERKRNKLKDFVVMSGPLGVTHLLMLSKTE 89 (405)
T ss_pred hhhhcCccchhhcccCceEEEEecccccccHHHHHHHHHHhhCcchhhHHHHHhhhhhhhHHhhcccccceEEEEEeccc
Confidence 33344556677888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEeCCCCCeEEEEEecceehhhhhhhcCCCCCCCCCCCCccEEEecCCCCCc-hhhHHHHHHHHhcCCCCCCCc
Q 019826 97 SAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGD-QHLKLTTIMFQNIFPAIDINT 175 (335)
Q Consensus 97 k~~~L~I~rlP~GPTl~F~I~ny~~~~di~~~~k~~~~~g~~~~s~PlLIfngF~t~~-~~lkli~~lfq~mFp~~~v~~ 175 (335)
...+|+|+|+|.|||++|+|..|++.+||...++||+++...|+++||||||||++.. +|++++..|||+|||++++++
T Consensus 90 ~nlslki~R~PqGPTLtFkV~qYsLardV~~~qkrp~~~~~~Fk~pPLlVmNgFg~~~~~HlkL~~t~FQNmFPsInv~t 169 (405)
T KOG2963|consen 90 TNLSLKIARTPQGPTLTFKVHQYSLARDVVSLQKRPKSPNDLFKSPPLLVLNGFGTSGRKHLKLMTTMFQNMFPSINVAT 169 (405)
T ss_pred CceeEEEEecCCCCceEEEeeehhhHHHHHHHHhCCCCchhhccCCCEEEEccCCCCcchhHHHHHHHHHHcCCCcCcce
Confidence 9999999999999999999999999999999999999997779999999999999976 799999999999999999999
Q ss_pred ccCCCCCeEEEEeeecCCCeEEEEEEEEEeecccchhhhHhhhhccc----CCCCccccchhHHhhhcC-CCCCCccccc
Q 019826 176 VKLSTCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQ----VPDLRSLQDVSDFVTKAG-YGSESEADDE 250 (335)
Q Consensus 176 ~~l~~~~rVilf~~~~~~d~I~fRhY~I~~~~~g~s~~vk~l~~~~~----~pnL~~~~dis~~~~~~~-~~sese~e~~ 250 (335)
++|..|+||++++|+.+++.|.||||.|...++|+||+||+|+++++ +|||++++|||||+.+++ |+||||.|++
T Consensus 170 vnlntikRcllinyn~dt~eIdmRHysI~vvpVGisR~vkkl~k~~~~~~~iPnL~~~~DISd~vl~~g~~~seSE~e~d 249 (405)
T KOG2963|consen 170 VNLNTIKRCLLINYNRDTGEIDMRHYSIRVVPVGISRNVKKLVKAKKNLSTIPNLHRLQDISDLVLKGGLYASESEIEDD 249 (405)
T ss_pred eeccceeEEEEEecCCCCCeeeeeeeEEEEEecccchHHHHHHhhhcccCCCCCchhhhhHHHHhcCCcccccccccccc
Confidence 99999999999999999999999999999999999999999999875 599999999999999877 9999998876
Q ss_pred cce-e----------eeeccc-ccccccCcccceeeEEecccceeeeeEeecccCccceeeEeccccchhh
Q 019826 251 AAT-V----------TLVSDL-GRVNRASTKSAVKLQEIGPRMTLQLIKVEEGLCSGSIIFSEYGTVGDKK 309 (335)
Q Consensus 251 ~~~-v----------~~~~~~-~~~~~~~~~~~v~L~EIGPR~tLkL~kIeeG~~~G~vlyh~~v~kt~~~ 309 (335)
+.+ | +||+.. ++++...++++|+|+||||||||+|+||+||+|+|+||||.||.||+++
T Consensus 250 ~~~~i~~~~~~~~eveL~q~~~s~g~~~~qksaikL~EIGPRlTlqLvKIeEGi~~GkVlyH~hv~Kt~eE 320 (405)
T KOG2963|consen 250 ATVRIVDNQDVKEEVELPQPKASRGNQPPQKSAIKLTEIGPRLTLQLVKIEEGICEGKVLYHEHVQKTEEE 320 (405)
T ss_pred cceEEeccccchhhhhccccccccCCCcccccceeeEeecccceEEEEEeeccccccceEEeehhcCCHHH
Confidence 553 2 356654 6667778899999999999999999999999999999999999999943
No 2
>KOG2971 consensus RNA-binding protein required for biogenesis of the ribosomal 60S subunit [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.5e-45 Score=336.00 Aligned_cols=201 Identities=24% Similarity=0.404 Sum_probs=184.0
Q ss_pred CcEEEEccCCCChhHHHHHHHHhhccCCccccccccccccchhhHHhhcccCCCcEEEEE-EeeCCCCcEEEEeCCCCCe
Q 019826 33 PKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLML-SKTESAPYLRVARTPQGPT 111 (335)
Q Consensus 33 Pk~lV~~rg~~s~~v~~L~kDLr~lm~P~t~~~lk~~kkn~lkdf~~~a~~~~~t~livf-s~~kk~~~L~I~rlP~GPT 111 (335)
-++||+++++++.+.||||+||..| +||+....+..++..+..+.++|...+|+.+++| ++.++++||||+..|+|||
T Consensus 50 ~rvlv~ssRgis~R~RhLm~di~~L-lph~k~dsk~d~~k~l~~lnel~elkncn~~lfFesrkr~DlYlWm~~~p~GpS 128 (299)
T KOG2971|consen 50 ERVLVLSSRGISFRTRHLMKDISSL-LPHSKKDSKLDRKKKLGVLNELAELKNCNSCLFFESRKRKDLYLWMSNSPNGPS 128 (299)
T ss_pred eeEEEEecCCchHHHHHHHHHHHHh-cccccccchhhhcchHHHHHHHHHHhcCCeEEEEEeeccCceeEEEecCCCCCc
Confidence 3799999999999999999999999 6999988888877889999999999999999999 6666679999999999999
Q ss_pred EEEEEecceehhhhhhhcCCCCCCCCCCC-CccEEEecC-CCCCchhhHHHHHHHHhcCCCCCCCcccCCCCCeEEEEee
Q 019826 112 LTFKIHEYSLAVDVAQSQLRPRCPQDLFK-TSPLIVLSG-FGTGDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNY 189 (335)
Q Consensus 112 l~F~I~ny~~~~di~~~~k~~~~~g~~~~-s~PlLIfng-F~t~~~~lkli~~lfq~mFp~~~v~~~~l~~~~rVilf~~ 189 (335)
+.|.|+|.+||.|+..+ |||++ ++|+|.|+. |.+ .+|++++++||++.|..|+.++.+.+++|||++|++
T Consensus 129 vkFlv~n~hTM~Elkmt-------gN~lkgsrplLsFd~~Fd~-~pHlkl~Kell~q~fgiP~~hrkSkpf~Dhvf~Fsi 200 (299)
T KOG2971|consen 129 VKFLVHNVHTMAELKMT-------GNCLKGSRPLLSFDKAFDE-LPHLKLLKELLEQIFGIPKHHRKSKPFVDHVFTFSI 200 (299)
T ss_pred eEEehhhhhhHHHhCCc-------cccccCCcceeeccccccc-chHHHHHHHHHHHHcCCCCCCcccCCccceEEEEEE
Confidence 99999999999999988 99996 999999997 766 579999999999999999999999999999999998
Q ss_pred ecCCCeEEEEEEEEEeecccchhhhHhhhhcccCCCCccccchhHHhhhcCCCCCCccccccceeeeecccccccccCcc
Q 019826 190 NKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPDLRSLQDVSDFVTKAGYGSESEADDEAATVTLVSDLGRVNRASTK 269 (335)
Q Consensus 190 ~~~~d~I~fRhY~I~~~~~g~s~~vk~l~~~~~~pnL~~~~dis~~~~~~~~~sese~e~~~~~v~~~~~~~~~~~~~~~ 269 (335)
.|+.||||.|+|.. .
T Consensus 201 --~D~~IWfRnyqI~~-----------------------------------------~---------------------- 215 (299)
T KOG2971|consen 201 --LDGKIWFRNYQISE-----------------------------------------E---------------------- 215 (299)
T ss_pred --ecCeEEEEEeEecc-----------------------------------------c----------------------
Confidence 78999999999963 0
Q ss_pred cceeeEEecccceeeeeEeecccCccceeeEe--ccccch
Q 019826 270 SAVKLQEIGPRMTLQLIKVEEGLCSGSIIFSE--YGTVGD 307 (335)
Q Consensus 270 ~~v~L~EIGPR~tLkL~kIeeG~~~G~vlyh~--~v~kt~ 307 (335)
+.+.|+||||||+|.+++|.+|+|+|.+||.+ ||+.+-
T Consensus 216 ed~~L~EiGPRfvl~~ikif~gsFgG~~lYenp~yvspn~ 255 (299)
T KOG2971|consen 216 EDKTLIEIGPRFVLNVIKIFEGSFGGPTLYENPKYVSPNM 255 (299)
T ss_pred cCcceeeeccHHHHhHHHHHhccCCCceeecCccccCHHH
Confidence 12679999999999999999999999999974 887654
No 3
>COG5154 BRX1 RNA-binding protein required for 60S ribosomal subunit biogenesis [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.3e-43 Score=312.37 Aligned_cols=208 Identities=26% Similarity=0.409 Sum_probs=186.6
Q ss_pred CCCcEEEEccCCCChhHHHHHHHHhhccCCccccccccccccchhhHHhhcccCCCcEEEEE-EeeCCCCcEEEEeCCCC
Q 019826 31 KIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLML-SKTESAPYLRVARTPQG 109 (335)
Q Consensus 31 ~~Pk~lV~~rg~~s~~v~~L~kDLr~lm~P~t~~~lk~~kkn~lkdf~~~a~~~~~t~livf-s~~kk~~~L~I~rlP~G 109 (335)
..-+++|+++++++-++||||+||..| .||+.+.-|+.-+..+.++.++|..++|+++++| ++.+.++|||+++.|+|
T Consensus 29 ~kq~~lilSsRGvsyr~RHL~~Dls~l-~phskke~KlD~kk~l~qLnelaelynCnn~lFFesrkr~Dlyl~~ar~pnG 107 (283)
T COG5154 29 PKQTSLILSSRGVSYRIRHLMKDLSRL-VPHSKKEQKLDMKKNLGQLNELAELYNCNNMLFFESRKRSDLYLMGARIPNG 107 (283)
T ss_pred ccceEEEEecCCchHHHHHHHHHHHHh-CcccccccccchhhhHHHHHHHHHHhcCCceEEEeecccccceeeeccCCCC
Confidence 345789999999999999999999999 6999888888888889999999999999999999 66666799999999999
Q ss_pred CeEEEEEecceehhhhhhhcCCCCCCCCCCC-CccEEEecC-CCCCchhhHHHHHHHHhcCCCCCCCcccCCCCCeEEEE
Q 019826 110 PTLTFKIHEYSLAVDVAQSQLRPRCPQDLFK-TSPLIVLSG-FGTGDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLL 187 (335)
Q Consensus 110 PTl~F~I~ny~~~~di~~~~k~~~~~g~~~~-s~PlLIfng-F~t~~~~lkli~~lfq~mFp~~~v~~~~l~~~~rVilf 187 (335)
||+.|+|+|.+||+|+..+ |++++ ++|.|.|+. |.+. |||+.++++|++.|..|+....+.++++||++|
T Consensus 108 ptvkF~~~NlhTMdelNft-------gN~lKgsrpvLsFdk~Fe~~-pHlk~~Kell~h~F~ip~~arrSkpfiD~v~~f 179 (283)
T COG5154 108 PTVKFRMHNLHTMDELNFT-------GNSLKGSRPVLSFDKEFEDI-PHLKYAKELLEHIFGIPKGARRSKPFIDKVLCF 179 (283)
T ss_pred CeEEEEEeccchHhhcCCc-------cccccCCcceEeeccccccc-hHHHHHHHHHHHhccCCCcccccccchhheEEE
Confidence 9999999999999999987 99997 999999998 7775 799999999999999999888899999999999
Q ss_pred eeecCCCeEEEEEEEEEeecccchhhhHhhhhcccCCCCccccchhHHhhhcCCCCCCccccccceeeeecccccccccC
Q 019826 188 NYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPDLRSLQDVSDFVTKAGYGSESEADDEAATVTLVSDLGRVNRAS 267 (335)
Q Consensus 188 ~~~~~~d~I~fRhY~I~~~~~g~s~~vk~l~~~~~~pnL~~~~dis~~~~~~~~~sese~e~~~~~v~~~~~~~~~~~~~ 267 (335)
++ .||+||+|.|.|.. |.||
T Consensus 180 ~i--~DgkIWvR~YeI~r----------------------------------------e~ed------------------ 199 (283)
T COG5154 180 FI--LDGKIWVRCYEIGR----------------------------------------ENED------------------ 199 (283)
T ss_pred EE--ecCeEEEEEEeecc----------------------------------------cccc------------------
Confidence 87 79999999999953 1122
Q ss_pred cccceeeEEecccceeeeeEeecccCccceeeEe--ccccch
Q 019826 268 TKSAVKLQEIGPRMTLQLIKVEEGLCSGSIIFSE--YGTVGD 307 (335)
Q Consensus 268 ~~~~v~L~EIGPR~tLkL~kIeeG~~~G~vlyh~--~v~kt~ 307 (335)
....|+|+||||||+|.+++|.||+|+|.+||.+ ||+.|-
T Consensus 200 ~~~dv~L~EIGPRfVmtvi~iLEgsFgGp~iYkn~~~vs~~~ 241 (283)
T COG5154 200 KSKDVKLEEIGPRFVMTVIKILEGSFGGPAIYKNETFVSSTM 241 (283)
T ss_pred ccccceeeeeccHHHHHHHHHHHhccCCceeeecccccchHH
Confidence 1134899999999999999999999999999974 888775
No 4
>PF04427 Brix: Brix domain; InterPro: IPR007109 The Brix domain is found in a number of eukaryotic proteins including some from Saccharomyces cerevisiae and Homo sapiens, Arabidopsis thaliana Peter Pan-like protein and several hypothetical proteins. There are six (one archaean and five eukaryotic) protein families which have a similar domain architecture with a central globular Brix domain. They have an optional N- and obligatory C-terminal segments, which both have charged low-complexity regions []. Proteins from the Imp4/Brix superfamily appear to be involved in ribosomal RNA processing, which essential for the functioning of all cells. The N- and C-terminal halves of a member of the superfamily, Mil, show significant structural similarity to one another. This suggests an origin by means of an ancestral duplication. Both halves have the same fold as the anticodon-binding domain of class IIa aminoacyl-tRNA synthetases, with greater conservation seen in the N-terminal half. Structural evidence suggests that the Imp4/Brix superfamily proteins could bind single-stranded segments of RNA along a concave surface formed by the N-terminal half of their beta-sheet and a central alpha-helix [].; PDB: 2CXH_A.
Probab=100.00 E-value=9.4e-42 Score=305.74 Aligned_cols=157 Identities=34% Similarity=0.585 Sum_probs=75.5
Q ss_pred EEccCCCChhHHHHHHHHhhccCCccccccccccccchhhHHhhcccCCCcEEEEEEeeCCC-CcEEEEeCCCCCeEEEE
Q 019826 37 VFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESA-PYLRVARTPQGPTLTFK 115 (335)
Q Consensus 37 V~~rg~~s~~v~~L~kDLr~lm~P~t~~~lk~~kkn~lkdf~~~a~~~~~t~livfs~~kk~-~~L~I~rlP~GPTl~F~ 115 (335)
|+++++++..+++|++||+.+|.|| +..++.++.|.+++++++|..++|+|+++|+++++. ++|||+|+|+|||++|+
T Consensus 1 i~ts~~~s~~~~~l~~DL~~l~~p~-s~~~~r~~~~~l~~~~~~~~~~~~~~l~~~~~~~k~p~~L~i~r~~~gptl~f~ 79 (191)
T PF04427_consen 1 ITTSRKPSKRLRQLMKDLRSLFPPN-SKKLNRKKKNSLKDLLEFAKQKNCTSLFVFGEHKKNPNNLWIGRLPNGPTLEFS 79 (191)
T ss_dssp -EESSS--HHHHHHHHHHHTTS-TT-EEE---TT---HHHHHHHHHHTTEEEEEEEEEETTEEEEEEEEE-SS--EEEEE
T ss_pred cCCCCCCCHHHHHHHHHHHHHcCCC-eEEEeCCCCCchHHHHHHHHHCCCCEEEEEEEeCCCcceEEEEecCCCCCEEEE
Confidence 6889999999999999999997355 667876676799999999999999999999888875 99999999999999999
Q ss_pred EecceehhhhhhhcCCCCCCCCCCCCccEEEecCCCCCc-hhhHHHHHHHHhcCCCCCCCcccCCCCCeEEEEeeecCCC
Q 019826 116 IHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGD-QHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTK 194 (335)
Q Consensus 116 I~ny~~~~di~~~~k~~~~~g~~~~s~PlLIfngF~t~~-~~lkli~~lfq~mFp~~~v~~~~l~~~~rVilf~~~~~~d 194 (335)
|++|++++|+..+.+++ .+++|+|||+||.+.. ++++++++||++|||++.++++.+.+++|||+|++ ++|
T Consensus 80 I~~~~~~~~~~~~~~~~------~~~~P~lif~g~~~~~~~~~~~ik~~l~~lF~~~~~~~~~~~~~~rvi~f~~--~~d 151 (191)
T PF04427_consen 80 IENYKLMKDIKSSSKRP------KGSRPLLIFNGFFFELDPELKLIKELLQDLFPGPNVDSIPLPGIDRVISFSN--QRD 151 (191)
T ss_dssp EEEEE-HHHHT-------------S---EEEEE-----------------------------------------------
T ss_pred EEeEEEhhHhcccccCC------CCCCeEEEEEeccccccccccccccccccccccccccccccccccccccccc--ccc
Confidence 99999999999763322 2578999999987753 78999999999999999999999999999999987 566
Q ss_pred e-EEEEEEEE
Q 019826 195 L-IDFRHYSI 203 (335)
Q Consensus 195 ~-I~fRhY~I 203 (335)
. |||||| |
T Consensus 152 ~~I~fR~Y-i 160 (191)
T PF04427_consen 152 FVIFFRHY-I 160 (191)
T ss_dssp ----------
T ss_pred cccccccc-c
Confidence 6 999999 7
No 5
>KOG2780 consensus Ribosome biogenesis protein RPF1, contains IMP4 domain [RNA processing and modification]
Probab=100.00 E-value=2e-36 Score=279.48 Aligned_cols=196 Identities=21% Similarity=0.345 Sum_probs=169.5
Q ss_pred CCCcEEEEccCCCChhHHHHHHHHhhccCCccccccccccccchhhHHhhcccCCCcEEEEEEeeCCC-CcEEEEeCCCC
Q 019826 31 KIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESA-PYLRVARTPQG 109 (335)
Q Consensus 31 ~~Pk~lV~~rg~~s~~v~~L~kDLr~lm~P~t~~~lk~~kkn~lkdf~~~a~~~~~t~livfs~~kk~-~~L~I~rlP~G 109 (335)
..||+||++...+......|+.+|+.+ +||+.... +++..++.++++|..+++|+++++++.++. +.|.|+++|+|
T Consensus 95 ~spKvlITt~~~~~~~t~~~~~eL~~i-iPNs~~~~--R~~~~vk~i~~~a~~~eftdlvvV~edRkk~n~L~iihlP~G 171 (302)
T KOG2780|consen 95 FSPKVLITTSKNPKRTTYKFASELLDI-IPNSTVKK--RDNYTVKSIVEIAIKREFTDLVVVNEDRKKPNGLKIIHLPNG 171 (302)
T ss_pred cCccEEEEcCCCCcccHHHHHHHHHHh-CCCceEEe--cCCchHHHHHHHHHHhcCCceEEEecCcCCccceEEEecCCC
Confidence 348999999999899999999999999 89987544 457889999999999999999999877766 99999999999
Q ss_pred CeEEEEEecceehhhhhhhcCCCCCCCCCCCCccEEEecCCCCCchhhHHHHHHHHhcCCCCCCCcccCCCCCeEEEEee
Q 019826 110 PTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNY 189 (335)
Q Consensus 110 PTl~F~I~ny~~~~di~~~~k~~~~~g~~~~s~PlLIfngF~t~~~~lkli~~lfq~mFp~~~v~~~~l~~~~rVilf~~ 189 (335)
||++|.+.+|.+.+||... |....|.|.||+|||+++++ ..|++||++|||..+ .+ ..+||++||+
T Consensus 172 PT~~Fkls~~~~~kdi~k~-------g~~t~h~PElIlNNFtTrlG--~~v~r~f~sLfp~~p----~f-~gRrvvtFhn 237 (302)
T KOG2780|consen 172 PTAYFKLSNVVLTKDIKKH-------GRPTSHIPELILNNFTTRLG--MTVGRLFASLFPHDP----QF-TGRRVVTFHN 237 (302)
T ss_pred CceEEEeecccchhhhhhc-------CCcccccchhhhhcccchhh--HHHHHHHHHhCCCCc----cc-cceeEEEEEe
Confidence 9999999999999999987 77788999999999999874 599999999999544 23 5899999887
Q ss_pred ecCCCeEEEEEEEEEeecccchhhhHhhhhcccCCCCccccchhHHhhhcCCCCCCccccccceeeeecccccccccCcc
Q 019826 190 NKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPDLRSLQDVSDFVTKAGYGSESEADDEAATVTLVSDLGRVNRASTK 269 (335)
Q Consensus 190 ~~~~d~I~fRhY~I~~~~~g~s~~vk~l~~~~~~pnL~~~~dis~~~~~~~~~sese~e~~~~~v~~~~~~~~~~~~~~~ 269 (335)
++|.|+||||+|.++.. .
T Consensus 238 --QrD~IfFRhhRY~Fkee------------------------------------------------------------~ 255 (302)
T KOG2780|consen 238 --QRDYIFFRHHRYEFKEE------------------------------------------------------------E 255 (302)
T ss_pred --cCceEEEEEEEEeeccc------------------------------------------------------------c
Confidence 89999999999987421 1
Q ss_pred cceeeEEecccceeeeeEeecccCccceeeEecccc
Q 019826 270 SAVKLQEIGPRMTLQLIKVEEGLCSGSIIFSEYGTV 305 (335)
Q Consensus 270 ~~v~L~EIGPR~tLkL~kIeeG~~~G~vlyh~~v~k 305 (335)
..+.|+||||||||+|.++++|.|+-...-+.|+.+
T Consensus 256 ~kvglqElGPrfTLrL~~lq~G~fd~K~ge~~~~~~ 291 (302)
T KOG2780|consen 256 IKVGLQELGPRFTLRLRRLQKGTFDEKEGEFEWVHK 291 (302)
T ss_pred cccchhhcCCceeeeehhhhhccccccceeeeeeec
Confidence 358899999999999999999999844444455544
No 6
>KOG2781 consensus U3 small nucleolar ribonucleoprotein (snoRNP) component [RNA processing and modification]
Probab=100.00 E-value=1.1e-35 Score=271.58 Aligned_cols=200 Identities=22% Similarity=0.410 Sum_probs=174.6
Q ss_pred CCCCCCcEEEEccCCCChhHHHHHHHHhhccCCccccccccccccchhhHHhhcccCCCcEEEEEEeeCCC-CcEEEEeC
Q 019826 28 TGDKIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESA-PYLRVART 106 (335)
Q Consensus 28 ~~~~~Pk~lV~~rg~~s~~v~~L~kDLr~lm~P~t~~~lk~~kkn~lkdf~~~a~~~~~t~livfs~~kk~-~~L~I~rl 106 (335)
+.+.+||+||++++.+|.++.+|+++|+-| +||+ .++. +....+..+++.|..+|+|+++++++.++. .+|.|+++
T Consensus 78 ag~~dPKimvTTSR~PSsrL~~FaKelkLv-fPNa-qr~n-RG~~~~~~lv~a~ra~~~Td~iivHEhRG~PdgL~vshl 154 (290)
T KOG2781|consen 78 AGEEDPKIMVTTSRDPSSRLKMFAKELKLV-FPNA-QRLN-RGNYVVGELVDAARANGVTDLIIVHEHRGIPDGLVVSHL 154 (290)
T ss_pred ccCCCCcEEEEeCCCchHHHHHHHHhheEe-ccCh-hhhc-ccceeHHHHHHHHHHCCCceEEEEeccCCCCCceEEEec
Confidence 345679999999999999999999999977 7995 5675 556889999999999999999999999998 99999999
Q ss_pred CCCCeEEEEEecceehhhhhhhcCCCCCCCCCCCCccEEEecCCCCCchhhHHHHHHHHhcCCCCCCCcccCCCCCeEEE
Q 019826 107 PQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVL 186 (335)
Q Consensus 107 P~GPTl~F~I~ny~~~~di~~~~k~~~~~g~~~~s~PlLIfngF~t~~~~lkli~~lfq~mFp~~~v~~~~l~~~~rVil 186 (335)
|.|||+.|.|.|+.+.+||... |.....+|.||||||++.. +++++.+|.++||.|.. ..+|||+
T Consensus 155 PfGPTa~Fsl~nvVmRhdip~~-------G~msE~~phlIfdNf~t~l--G~Rv~~iLkhLFP~pk~------ds~Rvvt 219 (290)
T KOG2781|consen 155 PFGPTAFFSLHNVVMRHDIPDI-------GTMSEQKPHLIFDNFTTKL--GKRVKTILKHLFPVPKD------DSKRVVT 219 (290)
T ss_pred CCCCceEeeeeeeeeccccccc-------ccccccCceEEeccccchH--HHHHHHHHHHhCCCCcC------CcccEEE
Confidence 9999999999999999999986 7777789999999999976 58999999999996653 6899998
Q ss_pred EeeecCCCeEEEEEEEEEeecccchhhhHhhhhcccCCCCccccchhHHhhhcCCCCCCccccccceeeeeccccccccc
Q 019826 187 LNYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPDLRSLQDVSDFVTKAGYGSESEADDEAATVTLVSDLGRVNRA 266 (335)
Q Consensus 187 f~~~~~~d~I~fRhY~I~~~~~g~s~~vk~l~~~~~~pnL~~~~dis~~~~~~~~~sese~e~~~~~v~~~~~~~~~~~~ 266 (335)
|.+ .+|.|.||||.|...
T Consensus 220 f~N--~~DyIsFRhhvy~~~------------------------------------------------------------ 237 (290)
T KOG2781|consen 220 FAN--RNDYISFRHHVYKKT------------------------------------------------------------ 237 (290)
T ss_pred Eec--CCceEEEEEEEEecC------------------------------------------------------------
Confidence 754 899999999999641
Q ss_pred CcccceeeEEecccceeeeeEeecccCc---cceee--Eeccccchh
Q 019826 267 STKSAVKLQEIGPRMTLQLIKVEEGLCS---GSIIF--SEYGTVGDK 308 (335)
Q Consensus 267 ~~~~~v~L~EIGPR~tLkL~kIeeG~~~---G~vly--h~~v~kt~~ 308 (335)
....|.|.|+||||.|+|+.|--|+++ +++.| +.|+....+
T Consensus 238 -~~k~vel~evGPRfelklyeIrlGTlE~~~ad~EW~~rpY~nTa~k 283 (290)
T KOG2781|consen 238 -DGKEVELTEVGPRFELKLYEIRLGTLEIKDADVEWVLRPYMNTARK 283 (290)
T ss_pred -CCceEEEeeccccceeeeeeeeecceeccccceeEEecchhcchhh
Confidence 013588999999999999999999985 77777 588875443
No 7
>smart00879 Brix Brix domain. The Brix domain is found in a number of eukaryotic proteins including SSF proteins from yeast and humans, Arabidopsis thaliana Peter Pan-like protein and several hypothetical proteins.
Probab=100.00 E-value=2.5e-33 Score=247.70 Aligned_cols=159 Identities=29% Similarity=0.456 Sum_probs=132.2
Q ss_pred EEEccCCCChhHHHHHHHHhhccCCccccccccccccchhhHHhhcccC-CCcEEEEEEee-CCC-CcEEEEeCCCCCeE
Q 019826 36 FVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPM-GVTHFLMLSKT-ESA-PYLRVARTPQGPTL 112 (335)
Q Consensus 36 lV~~rg~~s~~v~~L~kDLr~lm~P~t~~~lk~~kkn~lkdf~~~a~~~-~~t~livfs~~-kk~-~~L~I~rlP~GPTl 112 (335)
||+++++++..+++|++||+.++.|+++. . ++++.+.++.+.|... +|++++++..+ ++. .+|||+++|+|||+
T Consensus 1 lit~sr~~s~~~r~~~~dL~~~~~~~~~~-~--r~~~~~~~~~e~~~~~~~~~~i~v~e~~~k~~p~~L~i~~~~~gp~l 77 (180)
T smart00879 1 LITTSRKPSKRTRQLAKDLRRLFPPSTKI-N--RGKNKLNELLEFASEKGNTDLLVVFESSSKGRPLNLTIYRLPNGPTL 77 (180)
T ss_pred CEEcCCCCCHHHHHHHHHHHHHCCCcEee-c--ccCccHHHHHHHHHHcCCccEEEEecccCCCCCceEEEEECCCCCcE
Confidence 58899999999999999999996455433 2 4556677777776665 77788888554 554 89999999999999
Q ss_pred EEEEecceehhhhhhhcCCCCCCCCCCCCccEEEecCCCCCchhhHHHHHHHHhcCCCCCCCcccCCCCCeEEEEeeecC
Q 019826 113 TFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKD 192 (335)
Q Consensus 113 ~F~I~ny~~~~di~~~~k~~~~~g~~~~s~PlLIfngF~t~~~~lkli~~lfq~mFp~~~v~~~~l~~~~rVilf~~~~~ 192 (335)
.|.|.++++++|+...+.. ....+++|+|||+||++.. .+++++||++|||.+++.++++++++|||+|++ +
T Consensus 78 ~f~i~~v~~~~~~~~~~~~----~~~~~~~P~li~~~~~~~~--~~~~k~~l~~~F~~~~~~~~~~~~~~rvi~f~~--~ 149 (180)
T smart00879 78 DFKILNVSLRKELKGFKTG----NCLTGSRPLLIFNNFFTEL--GKLIKELFQDLFPGPPEHKKSLPGLRRVVTFSN--Q 149 (180)
T ss_pred EEEEECcccHhhhhhhhcC----CCcCCCccEEEECCCCCch--HHHHHHHHHHHCCCCCccccccCCCCEEEEEEe--c
Confidence 9999999999999875332 2234589999999998875 389999999999999999999999999999987 5
Q ss_pred CCeEEEEEEEEEe
Q 019826 193 TKLIDFRHYSIRL 205 (335)
Q Consensus 193 ~d~I~fRhY~I~~ 205 (335)
+|.||||||.|..
T Consensus 150 ~~~I~~R~y~i~~ 162 (180)
T smart00879 150 DDYIFFRHYRIKF 162 (180)
T ss_pred CCEEEEEEEEEEc
Confidence 6899999999974
No 8
>KOG3031 consensus Protein required for biogenesis of the ribosomal 60S subunit [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=3.2e-26 Score=213.16 Aligned_cols=183 Identities=17% Similarity=0.278 Sum_probs=158.8
Q ss_pred hhhhccCCCCCCCCCCCCCcEEEEccCCCChhHHHHHHHHhhccCCccccccccccccchhhHHh------hcccCCCcE
Q 019826 15 SFVKKKQPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLN------VAGPMGVTH 88 (335)
Q Consensus 15 ~~~k~~~~~~~~~~~~~~Pk~lV~~rg~~s~~v~~L~kDLr~lm~P~t~~~lk~~kkn~lkdf~~------~a~~~~~t~ 88 (335)
++.|++...++|+..++....+.+.+..++..+.+.|.|++.+..|.+. . ..++|++.+|.+ ++.+++|+-
T Consensus 10 ~~~kr~l~kr~~klve~~k~alf~~g~~~~~tl~~vm~dl~alKKp~~i-~--~~rkN~i~pFEd~ssleffseK~D~sl 86 (307)
T KOG3031|consen 10 ARAKRALVKREPKLVENHKDALFLPGMKTNKTLLDVMKDLYALKKPLEI-R--YNRKNNIHPFEDPSSLEFFSEKNDCSL 86 (307)
T ss_pred hhhHHHHHhhchhhchhhhhhhccCchhhchHHHHHHHHHHHhccCcee-e--eccCCCcccCCCCchHHHHhhhhhhhh
Confidence 4556778888999999999999999999999999999999999999965 3 457789998855 588999966
Q ss_pred EEEEEeeCCC-CcEEEEeCCCCCe---EEEEEecceehhhhhhhcCCCCCCCCCCCCccEEEecC--CCCCchhhHHHHH
Q 019826 89 FLMLSKTESA-PYLRVARTPQGPT---LTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSG--FGTGDQHLKLTTI 162 (335)
Q Consensus 89 livfs~~kk~-~~L~I~rlP~GPT---l~F~I~ny~~~~di~~~~k~~~~~g~~~~s~PlLIfng--F~t~~~~lkli~~ 162 (335)
+++.++++++ ++|+|||++++.. ++|+|.||.+++|+..+ +...+++|+|+|+| |.+. +.++++++
T Consensus 87 fv~gs~sKKrp~nLv~gR~fd~~vlDMiElgI~~ykslsdF~~~-------k~~~gtKP~l~f~G~~f~~~-~~~krlkn 158 (307)
T KOG3031|consen 87 FVLGSHSKKRPNNLVIGRTFDYEVLDMIELGIENYKSLSDFKAA-------KITEGTKPMLIFQGAVFDQH-PEYKRLKN 158 (307)
T ss_pred hhhccccccCCCceEEEEecCchhhHHHHHhhhhhhhhhhhhcc-------CCCCCCCceEEEecchhccC-hHHHHHHH
Confidence 6666999998 9999999999998 59999999999999987 44457999999999 6665 57999999
Q ss_pred HHHhcCCCCCCCcccCCCCCeEEEEeeecCCCeEEEEEEEEEeeccc
Q 019826 163 MFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLIDFRHYSIRLQPVG 209 (335)
Q Consensus 163 lfq~mFp~~~v~~~~l~~~~rVilf~~~~~~d~I~fRhY~I~~~~~g 209 (335)
+|.++|..+.++++.|.++++|+.|+.. ++..|+||||.+.++++|
T Consensus 159 L~vDfFrge~vd~v~l~Gl~~v~vfta~-~~~~v~~r~Y~lklkKs~ 204 (307)
T KOG3031|consen 159 LFVDFFRGEKVDKVRLAGLEYVIVFTAT-EETNVLFRVYRLKLKKSG 204 (307)
T ss_pred HHHHHHcCCcccceeeccccEEEEEEee-cCceeeeeeeeeeeeecc
Confidence 9999999999999999999999988763 344599999999987654
No 9
>COG2136 IMP4 Predicted exosome subunit/U3 small nucleolar ribonucleoprotein (snoRNP) component, contains IMP4 domain [Translation, ribosomal structure and biogenesis / RNA processing and modification]
Probab=99.80 E-value=2.2e-18 Score=155.70 Aligned_cols=181 Identities=19% Similarity=0.313 Sum_probs=151.4
Q ss_pred CCcEEEEccCCCChhHHHHHHHHhhccCCccccccccccccchhhHHhhcccCCCcEEEEEEeeCCC-CcEEEEeC-CCC
Q 019826 32 IPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESA-PYLRVART-PQG 109 (335)
Q Consensus 32 ~Pk~lV~~rg~~s~~v~~L~kDLr~lm~P~t~~~lk~~kkn~lkdf~~~a~~~~~t~livfs~~kk~-~~L~I~rl-P~G 109 (335)
.|+.|||++.++|.++++|++||..+ +|++.... +.+.++.++...|...|.++++++++.++. ..|.+.++ |.|
T Consensus 1 ~~~~liTTSRkPS~Rtr~Fak~L~~~-lp~~~~~~--rg~~~~~el~~~a~~~g~~~l~iv~E~rGnP~~L~f~d~~~~~ 77 (191)
T COG2136 1 MPKMLLTTSRKPSRRTRSFAKDLSRV-LPNAYFLR--RGKKSIIELSEEAIARGATDLLIVGERRGNPARLTFYDLEPEG 77 (191)
T ss_pred CCcEEEEecCCccHHHHHHHHHHHHh-CCcceEEe--cCccchhHHHHHHHhcCCceEEEEEEecCCCcEEEEEEecCCC
Confidence 48999999999999999999999999 79987543 345789999999999999999999999988 89999999 999
Q ss_pred CeEEEEEecceehhhhhhhcCCCCCCCC-CCCCccEEEecCCCCCchhhHHHHHHHHhc----CCCCCCCcccCCCCCeE
Q 019826 110 PTLTFKIHEYSLAVDVAQSQLRPRCPQD-LFKTSPLIVLSGFGTGDQHLKLTTIMFQNI----FPAIDINTVKLSTCQRI 184 (335)
Q Consensus 110 PTl~F~I~ny~~~~di~~~~k~~~~~g~-~~~s~PlLIfngF~t~~~~lkli~~lfq~m----Fp~~~v~~~~l~~~~rV 184 (335)
|++.|.+.++++.+++... +. .-.+-|++|+++|.+... .+.+.++|+.+ |+.-. .+ ....|
T Consensus 78 ~~~~f~l~~v~l~re~~~~-------~~~~~~~~~~~I~~~~~~~~g-~~~~~~~~~~~~~~~f~~~~----~~-~~~~v 144 (191)
T COG2136 78 LTFSFKLSGVKLRREIPVL-------GPKSRLHGPELIFNNFTTLLG-FLKVAEAFSELLLVKFVPNP----AW-EHELV 144 (191)
T ss_pred ceEEEEEecceEEEecccc-------CCcccCCCCceeeeccccccc-chhhHHHHHhhcccccccCc----cc-ceeee
Confidence 9999999999999999886 33 334889999999999864 47888999999 76332 22 35667
Q ss_pred EEEeeecCCCeEEEEEEEEEeecccchhhhHhhhhcccCCCCccccchhHHhhhcCCCCCCccccccceeeeeccccccc
Q 019826 185 VLLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPDLRSLQDVSDFVTKAGYGSESEADDEAATVTLVSDLGRVN 264 (335)
Q Consensus 185 ilf~~~~~~d~I~fRhY~I~~~~~g~s~~vk~l~~~~~~pnL~~~~dis~~~~~~~~~sese~e~~~~~v~~~~~~~~~~ 264 (335)
+.+++ +++.+.||+|......
T Consensus 145 ~~~~~--~~~f~~~~~~~~~~~~--------------------------------------------------------- 165 (191)
T COG2136 145 ATGAN--KGDFKSLRRHRRVFEE--------------------------------------------------------- 165 (191)
T ss_pred eeccc--cceEEEEEeeeeEeee---------------------------------------------------------
Confidence 76554 7899999988765410
Q ss_pred ccCcccceeeEEecccceeeeeEeeccc
Q 019826 265 RASTKSAVKLQEIGPRMTLQLIKVEEGL 292 (335)
Q Consensus 265 ~~~~~~~v~L~EIGPR~tLkL~kIeeG~ 292 (335)
..+.+.|+||||+|+|-.++.|.
T Consensus 166 -----~~~~~~~vgp~~~~r~~~~~~g~ 188 (191)
T COG2136 166 -----DGIGLEEVGPRLTLRLWRMEDGR 188 (191)
T ss_pred -----eeeeEEEeCceeeeehhhhhhcc
Confidence 24789999999999999999983
No 10
>PRK03972 ribosomal biogenesis protein; Validated
Probab=99.65 E-value=1.5e-15 Score=138.33 Aligned_cols=125 Identities=14% Similarity=0.262 Sum_probs=104.0
Q ss_pred EEEEccCCCChhHHHHHHHHhhccCCccccccccccccchhhHHhhcccCCCcEEEEEEeeCCC-CcEEEEeCCCC---C
Q 019826 35 SFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESA-PYLRVARTPQG---P 110 (335)
Q Consensus 35 ~lV~~rg~~s~~v~~L~kDLr~lm~P~t~~~lk~~kkn~lkdf~~~a~~~~~t~livfs~~kk~-~~L~I~rlP~G---P 110 (335)
+|||++.++|.++++|++||..+ +||+.. + .|++..++++++.|...|+|+++++++.++. +.|.|++||+| |
T Consensus 2 iLITTSr~PS~rtr~F~keL~~v-~Pns~~-i-~RGk~~lkel~~~A~~~g~TdLIVV~E~rg~P~~L~i~hLP~gP~GP 78 (208)
T PRK03972 2 MLITTSHRPTRRTRSFGHDLERV-FPNSLY-L-TRGKKTIQDLLMEAYDRGYERLLIINVWKGNPLKMTFIKVGPEDWGY 78 (208)
T ss_pred EEEECCCCccHHHHHHHHHHHHh-CCCCEE-E-ecCCccHHHHHHHHHHCCCCeEEEEecCCCcCCeEEEEcCCCCCCCc
Confidence 68999999999999999999999 799753 3 3667899999999999999999999999888 99999999855 5
Q ss_pred eEEEEEecceehhhhh--hhcCCCCCCCCCCCCccEEEecCCCCCchhhHHHHHHHHhcCCC
Q 019826 111 TLTFKIHEYSLAVDVA--QSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPA 170 (335)
Q Consensus 111 Tl~F~I~ny~~~~di~--~~~k~~~~~g~~~~s~PlLIfngF~t~~~~lkli~~lfq~mFp~ 170 (335)
|++|+|.|+.+.+||. .. +....+.|++|.++|.+...+....+. +-..+..
T Consensus 79 Ta~FkLsnV~l~~ei~~~~~-------~~~s~~~p~iItts~kt~~g~~~~Ak~-lA~eLgi 132 (208)
T PRK03972 79 LGYLYLHGIKLQREMGFRNL-------RPIREDMPLVITTAKRVGLDHMAFAQV-FAELTGG 132 (208)
T ss_pred eEEEEEccEEEHHHcccCCC-------CCccccccEEEEcCCCCCHHHHHHHHH-HHHHhCC
Confidence 9999999999999994 34 556679999999999998655444333 3444433
No 11
>COG5106 RPF2 Uncharacterized conserved protein [Function unknown]
Probab=99.57 E-value=2.4e-15 Score=138.17 Aligned_cols=177 Identities=14% Similarity=0.202 Sum_probs=144.7
Q ss_pred hhccCCCCCCCCCCCCCcEEEEccCCCChhHHHHHHHHhhccCCccccccccccccchhhHHh------hcccCCCcEEE
Q 019826 17 VKKKQPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLN------VAGPMGVTHFL 90 (335)
Q Consensus 17 ~k~~~~~~~~~~~~~~Pk~lV~~rg~~s~~v~~L~kDLr~lm~P~t~~~lk~~kkn~lkdf~~------~a~~~~~t~li 90 (335)
.||++..|+|+..+....++++.+-.+++.+-..+-|+..+..|... . .-++|+|.+|.+ ++.+++|.-..
T Consensus 12 ~kRAl~kRepklve~~k~AiF~pg~s~~k~lldvi~d~~alkkp~~i-~--f~rkn~ihpfEd~SplEffseknd~~l~v 88 (316)
T COG5106 12 VKRALHKREPKLVEAHKDAIFYPGMSERKTLLDVICDTEALKKPKEI-G--FIRKNTIHPFEDTSPLEFFSEKNDKKLSV 88 (316)
T ss_pred HHHHHHhcCchhhhhhhheEeccCcccchhhhhhhcchhhhccchhh-c--cccCCcccccccCCHHHHHHHhhhhhhhh
Confidence 45889999999999999999999889899999999999999999854 3 356788887755 57889998888
Q ss_pred EEEeeCCC-CcEEEEeCCCCCe---EEEEEecceehhhhhhhcCCCCCCCCCCCCccEEEecC--CCCCchhhHHHHHHH
Q 019826 91 MLSKTESA-PYLRVARTPQGPT---LTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSG--FGTGDQHLKLTTIMF 164 (335)
Q Consensus 91 vfs~~kk~-~~L~I~rlP~GPT---l~F~I~ny~~~~di~~~~k~~~~~g~~~~s~PlLIfng--F~t~~~~lkli~~lf 164 (335)
+|++.+++ ++|.|+|..+.-. ++|.|.+|.+..|+..+ |...+.+|.++|.| |.+ .|.+++|+++|
T Consensus 89 l~ts~kKr~hnlt~~R~Fny~~~DMiEl~i~~yksvsdF~~~-------~~~~g~Kpmv~fQg~~fd~-hp~yr~iksLf 160 (316)
T COG5106 89 LFTSVKKRRHNLTIGRAFNYELIDMIELKINRYKSVSDFECA-------GPELGMKPMVVFQGINFDA-HPTYRRIKSLF 160 (316)
T ss_pred hhhhccccccceeEEeecchHHHHHHHHhhhhhhehhhhhcc-------CCccCCceEEEEecccccc-chHHHHHHHHH
Confidence 88777776 9999999999877 69999999999999876 67778999999998 665 46799999999
Q ss_pred HhcCCCCCCCcccCCCCCeEEEEeeec--CCC----eEEEEEEEEE
Q 019826 165 QNIFPAIDINTVKLSTCQRIVLLNYNK--DTK----LIDFRHYSIR 204 (335)
Q Consensus 165 q~mFp~~~v~~~~l~~~~rVilf~~~~--~~d----~I~fRhY~I~ 204 (335)
-++|.....+.....+..+||..+-.. ++. .+.||.|...
T Consensus 161 lDFFrges~~~ldsagls~Vi~~t~~g~~~d~~plp~v~fRVyk~k 206 (316)
T COG5106 161 LDFFRGESSKVLDSAGLSWVIARTEEGYVLDTYPLPLVVFRVYKTK 206 (316)
T ss_pred HHHHcCCchhhhhhcceeEEEEEecchhhhccccccceeeeeeecc
Confidence 999998776655556788888755311 121 2578998765
No 12
>PRK00933 ribosomal biogenesis protein; Validated
Probab=94.80 E-value=0.18 Score=44.96 Aligned_cols=74 Identities=14% Similarity=0.275 Sum_probs=58.6
Q ss_pred EEEccCCCChhHHHHHHHHhhccCCccccccccccccchhhHHhhcccCCCcEEEEEEeeCCC-CcEEEEeCCCCCeEEE
Q 019826 36 FVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESA-PYLRVARTPQGPTLTF 114 (335)
Q Consensus 36 lV~~rg~~s~~v~~L~kDLr~lm~P~t~~~lk~~kkn~lkdf~~~a~~~~~t~livfs~~kk~-~~L~I~rlP~GPTl~F 114 (335)
+||++.+++..+++++++|...+ ++. +-.|++.+++++...|.. .+++++++.++. ..|.|...-..+.+.+
T Consensus 2 IITTSrkPs~~t~~fAkeLa~~l--n~~--yv~Rgk~Sl~eL~~~~~~---~~llVV~E~kg~P~~L~iyd~~~~~~~~~ 74 (165)
T PRK00933 2 IITTSRKPSQRTRSLVKDLARFL--NCK--YVNRGKMSLQELLEECEA---RYLLIIGEYKGNPGALKFYDVEGNKLLSY 74 (165)
T ss_pred EEECCCCCCHHHHHHHHHHHHHh--CCE--EEccCCccHHHHHHHhcc---CcEEEEECCCCCCceEEEEECCCCEEEEE
Confidence 78999999999999999999984 653 334777899998766543 488999888877 8999999877777665
Q ss_pred EE
Q 019826 115 KI 116 (335)
Q Consensus 115 ~I 116 (335)
.|
T Consensus 75 ~~ 76 (165)
T PRK00933 75 RL 76 (165)
T ss_pred EE
Confidence 55
No 13
>PF03066 Nucleoplasmin: Nucleoplasmin; InterPro: IPR004301 The nucleophosmin/nucleoplasmin family of chaperones includes nucleophosmin, nucleoplasmin and nucleoplasmin-like proteins. They function as nuclear chaperones which are needed for the proper assembly of nucleosomes and the attainment of proper higher order chromatin structures [].; GO: 0003676 nucleic acid binding; PDB: 2P1B_E 1XB9_I 1XE0_C 1NLQ_A 2VTX_E 1K5J_D 1EJY_N 1EE5_B 3T30_J.
Probab=55.83 E-value=10 Score=33.24 Aligned_cols=18 Identities=28% Similarity=0.311 Sum_probs=15.0
Q ss_pred ccceeeEEecccceeeee
Q 019826 269 KSAVKLQEIGPRMTLQLI 286 (335)
Q Consensus 269 ~~~v~L~EIGPR~tLkL~ 286 (335)
+..+-+.||.|-.||+|.
T Consensus 76 ~vsL~~~~~~ppVtf~L~ 93 (149)
T PF03066_consen 76 MVSLDGFEITPPVTFRLK 93 (149)
T ss_dssp EEEEEEEEESSSEEEEEE
T ss_pred eEEcCCcccCCCEEEEEE
Confidence 345677999999999997
No 14
>PRK03972 ribosomal biogenesis protein; Validated
Probab=36.11 E-value=2.1e+02 Score=26.55 Aligned_cols=81 Identities=12% Similarity=0.180 Sum_probs=47.7
Q ss_pred CCCCCCcEEEEccCCCChhHHHHHHHHhhcc-CCccccccccccccchhhHHhhcccCCCcEEEEEEeeCCCCcEEEEe-
Q 019826 28 TGDKIPKSFVFSRGKLPGPLRQLEMDLRKLM-LPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVAR- 105 (335)
Q Consensus 28 ~~~~~Pk~lV~~rg~~s~~v~~L~kDLr~lm-~P~t~~~lk~~kkn~lkdf~~~a~~~~~t~livfs~~kk~~~L~I~r- 105 (335)
..+..| -+|+++.+++......++.+...+ .|+. .|++.++..+. ...++..++|+...-.+..+.+-|
T Consensus 101 ~s~~~p-~iItts~kt~~g~~~~Ak~lA~eLgi~yV-----~R~k~Sl~~L~---~~~~~d~vLVV~~~~~~~~~~~~~~ 171 (208)
T PRK03972 101 IREDMP-LVITTAKRVGLDHMAFAQVFAELTGGKFV-----PRGGKSLQDIA---DKYNTDVLGVIERHPRGMAVNFYRL 171 (208)
T ss_pred cccccc-EEEEcCCCCCHHHHHHHHHHHHHhCCcee-----CcCCcCHHHHH---hhhcCceEEEEecCCCceEEEEEEe
Confidence 344556 367777777776666666665542 1332 35666777553 445666777774444444555555
Q ss_pred -----CCCCCeEEEEEe
Q 019826 106 -----TPQGPTLTFKIH 117 (335)
Q Consensus 106 -----lP~GPTl~F~I~ 117 (335)
-|-||.+..++-
T Consensus 172 ~~~~~~~~~~~~~~~~~ 188 (208)
T PRK03972 172 DVTKERPVGPLIFVKIW 188 (208)
T ss_pred ccccccccCCcEEEEEE
Confidence 277888766653
No 15
>PF15210 SFTA2: Surfactant-associated protein 2
Probab=25.74 E-value=34 Score=25.11 Aligned_cols=21 Identities=33% Similarity=0.400 Sum_probs=13.0
Q ss_pred ecccceeeeeEeecccCccceee
Q 019826 277 IGPRMTLQLIKVEEGLCSGSIIF 299 (335)
Q Consensus 277 IGPR~tLkL~kIeeG~~~G~vly 299 (335)
.||+|||+|-- ...|-++.-|
T Consensus 1 ~GPgmtl~lKL--k~sfl~n~S~ 21 (59)
T PF15210_consen 1 TGPGMTLQLKL--KDSFLANSSY 21 (59)
T ss_pred CCCceEEEEEe--hhhhccccch
Confidence 39999999743 3344444444
No 16
>PF05508 Ran-binding: RanGTP-binding protein; InterPro: IPR008812 The small Ras-like GTPase Ran plays an essential role in the transport of macromolecules in and out of the nucleus and has been implicated in spindle and nuclear envelope formation during mitosis in higher eukaryotes. The Saccharomyces cerevisiae ORF YGL164c encoding a novel RanGTP-binding protein, termed Yrb30p was identified. The protein competes with S. cerevisiae RanBP1 (Yrb1p) for binding to the GTP-bound form of S. cerevisiae Ran (Gsp1p) and is, like Yrb1p, able to form trimeric complexes with RanGTP and some of the karyopherins [].
Probab=25.72 E-value=42 Score=32.88 Aligned_cols=37 Identities=22% Similarity=0.248 Sum_probs=27.9
Q ss_pred eEEecccceeeeeEeecccCc-------cceeeEeccccchhhh
Q 019826 274 LQEIGPRMTLQLIKVEEGLCS-------GSIIFSEYGTVGDKKK 310 (335)
Q Consensus 274 L~EIGPR~tLkL~kIeeG~~~-------G~vlyh~~v~kt~~~~ 310 (335)
-+=|||-|+|.|+.|..|-.. -.+.|.+-++|..-.-
T Consensus 186 ~~qvGP~F~lslY~lF~~~sr~~~~~~~~~~tWKE~~~ka~v~l 229 (302)
T PF05508_consen 186 PVQVGPTFTLSLYMLFYGHSRPKYEEGLRKITWKEVMHKARVRL 229 (302)
T ss_pred ccccCCcEEEEeeheecccccccccccccCcceeeeccceEEEE
Confidence 356899999999999988763 4678887666655433
No 17
>TIGR02433 lysidine_TilS_C tRNA(Ile)-lysidine synthetase, C-terminal domain. TIGRFAMs model TIGR02432 describes the family of the N-terminal domain of tRNA(Ile)-lysidine synthetase. This family (TIGR02433) describes a small C-terminal domain of about 50 residues present in about half the members of family TIGR02432,and in no other protein. Characterized examples of tRNA(Ile)-lysidine synthetase from E. coli and Bacillus subtilis both contain this domain.
Probab=21.00 E-value=89 Score=21.13 Aligned_cols=15 Identities=33% Similarity=0.592 Sum_probs=12.0
Q ss_pred chhhhHhhhhcccCC
Q 019826 210 VSRRLRKFVQSHQVP 224 (335)
Q Consensus 210 ~s~~vk~l~~~~~~p 224 (335)
-++.||+++++.++|
T Consensus 19 ~~k~lkk~~~e~kiP 33 (47)
T TIGR02433 19 GSKKLKKLFIDAKVP 33 (47)
T ss_pred CCchHHHHHHHcCCC
Confidence 578999999876665
No 18
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=20.30 E-value=1.9e+02 Score=21.13 Aligned_cols=53 Identities=17% Similarity=0.248 Sum_probs=39.4
Q ss_pred CCChhHHHHHHHHhhccCCccccccccccccchhhHHhhcccCCCcEEEEEEeeC
Q 019826 42 KLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTE 96 (335)
Q Consensus 42 ~~s~~v~~L~kDLr~lm~P~t~~~lk~~kkn~lkdf~~~a~~~~~t~livfs~~k 96 (335)
.+...+-.+.+-|..+ .|.....+-........|+..+|...|+ .++-..+..
T Consensus 9 ~CP~Pll~~~~~l~~l-~~G~~l~v~~d~~~~~~di~~~~~~~g~-~~~~~~~~~ 61 (70)
T PF01206_consen 9 SCPMPLLKAKKALKEL-PPGEVLEVLVDDPAAVEDIPRWCEENGY-EVVEVEEEG 61 (70)
T ss_dssp STTHHHHHHHHHHHTS-GTT-EEEEEESSTTHHHHHHHHHHHHTE-EEEEEEESS
T ss_pred CCCHHHHHHHHHHHhc-CCCCEEEEEECCccHHHHHHHHHHHCCC-EEEEEEEeC
Confidence 5566777788888887 7887766666777788999999999999 555554433
Done!