Query 019826
Match_columns 335
No_of_seqs 128 out of 685
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 07:40:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019826.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019826hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cxh_A Probable BRIX-domain ri 99.9 9.9E-22 3.4E-26 179.6 14.3 132 29-173 30-167 (217)
2 1w94_A MIL, probable BRIX-doma 98.9 5.9E-09 2E-13 90.6 10.5 85 34-127 1-86 (156)
3 1otr_A Protein CUE2; protein-p 11.0 43 0.0015 22.9 -0.5 13 162-174 9-21 (49)
4 3bbo_G Ribosomal protein L4; l 9.0 81 0.0028 29.5 0.4 14 314-327 262-275 (293)
5 3bbo_G Ribosomal protein L4; l 8.5 76 0.0026 29.6 0.0 18 315-332 266-283 (293)
6 4a74_A DNA repair and recombin 8.2 4.3E+02 0.015 21.6 4.8 33 85-117 190-225 (231)
7 2vvf_A Major capsid protein P2 7.9 1.6E+02 0.0054 27.2 1.9 24 103-127 20-46 (269)
8 2r41_A Uncharacterized protein 7.5 3.8E+02 0.013 21.3 3.8 34 158-202 34-67 (110)
9 2kkc_A Sequestosome-1; P62, PB 7.3 6.4E+02 0.022 19.5 5.0 34 157-198 44-77 (102)
10 3iz5_v 60S acidic ribosomal pr 7.0 97 0.0033 24.8 0.0 14 315-328 93-106 (113)
No 1
>2cxh_A Probable BRIX-domain ribosomal biogenesis protein; 18S rRNA, IMP4, U3 snoRNP, ribosomal biogenesis binding, structural genomics, NPPSFA; 1.80A {Aeropyrum pernix} SCOP: c.51.1.2
Probab=99.87 E-value=9.9e-22 Score=179.62 Aligned_cols=132 Identities=14% Similarity=0.120 Sum_probs=117.1
Q ss_pred CCCCCcEEEEccCCCChhHHHHHHHHhhccCCccccccccccccchhhHHhhcccCCCcEEEEEEeeCCC-CcEEEEeCC
Q 019826 29 GDKIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESA-PYLRVARTP 107 (335)
Q Consensus 29 ~~~~Pk~lV~~rg~~s~~v~~L~kDLr~lm~P~t~~~lk~~kkn~lkdf~~~a~~~~~t~livfs~~kk~-~~L~I~rlP 107 (335)
....||+|||++++++.++++|++||..+ +||+.. +. |++..|+++++.|..++||+++++.+.++. .+|||+++|
T Consensus 30 ~~~~pKvLITTSr~pS~r~r~fakeL~~~-lPns~~-i~-Rgk~sLkeL~e~a~~~~~tdlivV~e~rg~p~~L~~~hlP 106 (217)
T 2cxh_A 30 GVGGYRILVTTSRRPSPRIRSFVKDLSAT-IPGAFR-FT-RGHYSMEELAREAIIRGADRIVVVGERRGNPGIIRVYAVE 106 (217)
T ss_dssp ---CCEEEEEESSSCCHHHHHHHHHHHTT-STTEEE-CC-CTTCCHHHHHHHHHHTTEEEEEEEEEETTEEEEEEEEECC
T ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHHHHH-CCCCEE-ee-cCCcCHHHHHHHHHhCCCCEEEEEEecCCCCcEEEEEECC
Confidence 34689999999999999999999999999 699753 43 567899999999999999999999888877 999999999
Q ss_pred CC---C-eEEEEEecceehhhhhhhcCCCCCCCCCC-CCccEEEecCCCCCchhhHHHHHHHHhcCCCCCC
Q 019826 108 QG---P-TLTFKIHEYSLAVDVAQSQLRPRCPQDLF-KTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDI 173 (335)
Q Consensus 108 ~G---P-Tl~F~I~ny~~~~di~~~~k~~~~~g~~~-~s~PlLIfngF~t~~~~lkli~~lfq~mFp~~~v 173 (335)
+| | |++|+|.|+.+++|+... |+++ .++|+|+ ++|++. +++++++||++|||.|..
T Consensus 107 ~G~~~P~Ta~F~I~nv~l~~ei~~~-------g~~~~~~rP~L~-~nF~t~--~g~~i~~~f~~lFp~P~~ 167 (217)
T 2cxh_A 107 GPERPDNIVSFIVKGVSLSRERRWG-------LPSLRGGEVLVA-RPLDSG--VAVEFADAFVIAFHARLK 167 (217)
T ss_dssp SSSCCEEEEEEEEEEEECHHHHTCC-------CCCCCSCCEEEE-EESSSS--THHHHHHHHHHHHCCBSS
T ss_pred CCCCCCcEEEEEEeeEEehhhhccC-------CCccCCCCceEE-eeecCc--hHHHHHHHHHHHcCCCCC
Confidence 99 9 999999999999999987 6665 4899999 999986 578999999999998765
No 2
>1w94_A MIL, probable BRIX-domain ribosomal biogenesis protein; archaeal IMP4-BRIX domain, IMP4 domain; 2.0A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.2
Probab=98.91 E-value=5.9e-09 Score=90.56 Aligned_cols=85 Identities=13% Similarity=0.136 Sum_probs=71.9
Q ss_pred cEEEEccCCCChhHHHHHHHHhhccCCccccccccccccchhhHHhhcccCCCcEEEEEEeeCCC-CcEEEEeCCCCCeE
Q 019826 34 KSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESA-PYLRVARTPQGPTL 112 (335)
Q Consensus 34 k~lV~~rg~~s~~v~~L~kDLr~lm~P~t~~~lk~~kkn~lkdf~~~a~~~~~t~livfs~~kk~-~~L~I~rlP~GPTl 112 (335)
|.+||++.+++..+.+++++|..++ ++. .+ .|++.+++++++.|... ++++++.++. ..|.|.++|.|||+
T Consensus 1 kilITTSr~Ps~~l~~fakeLa~~l--n~~-~v-~Rgk~sl~~L~~~~~~~----~iVV~e~rg~P~~l~i~hlp~gpt~ 72 (156)
T 1w94_A 1 HMLLTTSRKPSQRTRSFSQRLSRIM--GWR-YI-NRGKMSLRDVLIEARGP----VAVVSERHGNPARITFLDERGGERG 72 (156)
T ss_dssp CCEEEECSSCCHHHHHHHHHHHHHH--TCE-EC-CCTTCCHHHHHHHHSSC----EEEEEEETTEEEEEEEECTTSCEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHh--CCE-EE-eeCCcCHHHHHHhcCCC----EEEEEcCCCCCCeEEEEeCCCCCEE
Confidence 5689999999999999999999984 654 33 36678999999887543 7777777776 89999999999999
Q ss_pred EEEEecceehhhhhh
Q 019826 113 TFKIHEYSLAVDVAQ 127 (335)
Q Consensus 113 ~F~I~ny~~~~di~~ 127 (335)
+|++ |+.+.+|+..
T Consensus 73 ~f~~-nv~l~~~~~~ 86 (156)
T 1w94_A 73 YILF-NPSFEMKKPE 86 (156)
T ss_dssp EEEE-EEEECSSCCC
T ss_pred EEEE-ceEEcccCcc
Confidence 9998 9999999863
No 3
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=10.96 E-value=43 Score=22.90 Aligned_cols=13 Identities=31% Similarity=0.685 Sum_probs=10.0
Q ss_pred HHHHhcCCCCCCC
Q 019826 162 IMFQNIFPAIDIN 174 (335)
Q Consensus 162 ~lfq~mFp~~~v~ 174 (335)
..|+.|||.....
T Consensus 9 ~~L~EMFP~~~~~ 21 (49)
T 1otr_A 9 SILMDMFPAISKS 21 (49)
T ss_dssp HHHHHHCSSSCHH
T ss_pred HHHHHHCCCCCHH
Confidence 4689999987654
No 4
>3bbo_G Ribosomal protein L4; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=8.99 E-value=81 Score=29.46 Aligned_cols=14 Identities=36% Similarity=0.696 Sum_probs=0.0
Q ss_pred Cccccccccccccc
Q 019826 314 SKQENQEDDEESEE 327 (335)
Q Consensus 314 ~~~~~~~~~~~~~~ 327 (335)
...|++|||||.++
T Consensus 262 ~~~~~~~~~~~~~~ 275 (293)
T 3bbo_G 262 DTLEDEDEEEEEEE 275 (293)
T ss_dssp --------------
T ss_pred ccccccccchhhhc
Confidence 35555555544444
No 5
>3bbo_G Ribosomal protein L4; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=8.45 E-value=76 Score=29.63 Aligned_cols=18 Identities=28% Similarity=0.627 Sum_probs=0.0
Q ss_pred cccccccccccccccCCC
Q 019826 315 KQENQEDDEESEEDVKGS 332 (335)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~ 332 (335)
.+|++||++|++++.++.
T Consensus 266 ~~~~~~~~~~~~~~~~~~ 283 (293)
T 3bbo_G 266 DEDEEEEEEEEGEEVDDG 283 (293)
T ss_dssp ------------------
T ss_pred ccccchhhhccccccccc
Confidence 345555555555555443
No 6
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=8.17 E-value=4.3e+02 Score=21.58 Aligned_cols=33 Identities=24% Similarity=0.327 Sum_probs=15.2
Q ss_pred CCcEEEEEEeeCCC-CcEEEEeCCCCCe--EEEEEe
Q 019826 85 GVTHFLMLSKTESA-PYLRVARTPQGPT--LTFKIH 117 (335)
Q Consensus 85 ~~t~livfs~~kk~-~~L~I~rlP~GPT--l~F~I~ 117 (335)
.|+..+++...+.. -.|++.+.+.||+ +.|.|.
T Consensus 190 ~~d~~l~l~~~~~~~r~l~~~K~r~~~~~~~~f~i~ 225 (231)
T 4a74_A 190 SATLRVYLRKGKGGKRIARLIDAPHLPEGEAVFSIT 225 (231)
T ss_dssp CCSEEEEEEECTTSCEEEEEESCC--CCSCEEEEEE
T ss_pred hceEEEEEEecCCCeEEEEEEeCCCCCCceEEEEEe
Confidence 34455555443332 4556666555554 355554
No 7
>2vvf_A Major capsid protein P2; double jelly-roll viral capsid, viral protein; 2.5A {Pseudoalteromonas phage PM2} PDB: 2w0c_A
Probab=7.90 E-value=1.6e+02 Score=27.17 Aligned_cols=24 Identities=13% Similarity=0.296 Sum_probs=17.4
Q ss_pred EEeCCCCCe---EEEEEecceehhhhhh
Q 019826 103 VARTPQGPT---LTFKIHEYSLAVDVAQ 127 (335)
Q Consensus 103 I~rlP~GPT---l~F~I~ny~~~~di~~ 127 (335)
.-++|-||| +.+.++++ +..+|..
T Consensus 20 tL~lPiG~TY~~I~L~~T~~-t~a~I~~ 46 (269)
T 2vvf_A 20 SIKLPIGQTYEVIDLRYSGV-TPSQIKN 46 (269)
T ss_dssp EEEECSSSEEEEEEEEEESS-CGGGEEE
T ss_pred EEEeccCCceEEEEEEEcCC-CHHHhee
Confidence 345899999 57777777 6666654
No 8
>2r41_A Uncharacterized protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics; 2.90A {Enterococcus faecalis}
Probab=7.53 E-value=3.8e+02 Score=21.27 Aligned_cols=34 Identities=3% Similarity=0.212 Sum_probs=22.6
Q ss_pred HHHHHHHHhcCCCCCCCcccCCCCCeEEEEeeecCCCeEEEEEEE
Q 019826 158 KLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLIDFRHYS 202 (335)
Q Consensus 158 kli~~lfq~mFp~~~v~~~~l~~~~rVilf~~~~~~d~I~fRhY~ 202 (335)
.+|-..+++.|| ++.++.|...+.++.+-++|.+
T Consensus 34 ~IID~~lKgv~~-----------Ld~ll~F~L~nn~~~lti~~sq 67 (110)
T 2r41_A 34 LIIDLNLKGVIP-----------LNDLLHFDLLNNNGKVTVHFSQ 67 (110)
T ss_dssp HHHHHHTBTTBC-----------CCSEEEEEEEEETTEEEEEEEE
T ss_pred HHHHHHhcCCcc-----------ccceEEEEEEecCCcEEEEEec
Confidence 355566777776 4556677766666678888764
No 9
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=7.26 E-value=6.4e+02 Score=19.46 Aligned_cols=34 Identities=15% Similarity=0.132 Sum_probs=0.0
Q ss_pred hHHHHHHHHhcCCCCCCCcccCCCCCeEEEEeeecCCCeEEE
Q 019826 157 LKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLIDF 198 (335)
Q Consensus 157 lkli~~lfq~mFp~~~v~~~~l~~~~rVilf~~~~~~d~I~f 198 (335)
+..+..+++.+||... ...+.+.-.+.++|.|.|
T Consensus 44 ~~~L~~~V~~lFp~l~--------~~~f~l~Y~DedGDlIti 77 (102)
T 2kkc_A 44 CERLLSRVAVLFPALR--------PGGFQAHYRAERGDLVAF 77 (102)
T ss_dssp HHHHHHHHHHHCTTSC--------SSCEEEEEECTTCCEEEE
T ss_pred HHHHHHHHHHHccccC--------CCcEEEEEECCCCCEEEe
No 10
>3iz5_v 60S acidic ribosomal protein P21 - P2 (L12P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_v
Probab=7.03 E-value=97 Score=24.81 Aligned_cols=14 Identities=43% Similarity=0.681 Sum_probs=0.0
Q ss_pred cccccccccccccc
Q 019826 315 KQENQEDDEESEED 328 (335)
Q Consensus 315 ~~~~~~~~~~~~~~ 328 (335)
+.+.+|+.|||++|
T Consensus 93 ~e~k~ee~EEsDdD 106 (113)
T 3iz5_v 93 KEEKVVEKEESDDD 106 (113)
T ss_dssp --------------
T ss_pred hhhhcccccccccc
Done!