BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019828
(335 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NLT|A Chain A, The Crystal Structure Of Hsp40 Ydj1
Length = 248
Score = 178 bits (452), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 96/239 (40%), Positives = 138/239 (57%), Gaps = 4/239 (1%)
Query: 37 EDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRH 96
+D+ H + SLE+LY G + KL+L++ ++ G G+K R
Sbjct: 12 KDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQ 71
Query: 97 LGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITF 156
+GP MIQ+ Q C+ C GTG+ I+ KDRC C G+KV E+K+LEV VE GM++GQ+I F
Sbjct: 72 MGP-MIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVENERKILEVHVEPGMKDGQRIVF 130
Query: 157 PGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQ 216
GEAD+APD + GD+VF++ ++ H FKR GDDL E + L A+ G +F + H+ G
Sbjct: 131 KGEADQAPDVIPGDVVFIVSERPHKSFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDW 190
Query: 217 LLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPES--LSPDQCKMLE 273
L + PGEV+ P K I +GMP+ + G L I FT+ PE+ S + K LE
Sbjct: 191 LKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGY-GNLIIKFTIKDPENHFTSEENLKKLE 248
>pdb|3AGZ|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
pdb|3AGZ|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
Length = 190
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 75/239 (31%), Positives = 108/239 (45%), Gaps = 63/239 (26%)
Query: 39 VIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLG 98
V H L+VSLE++Y+G +KK MK+S + L
Sbjct: 14 VTHDLRVSLEEIYSGCTKK--------------------------------MKISHKRLN 41
Query: 99 PSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPG 158
P G+ + E K+L + V+KG + G KITFP
Sbjct: 42 PD-----------------------------GKSIRNEDKILTIEVKKGWKEGTKITFPK 72
Query: 159 EADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLL 218
E D+ + + DIVFVL+ K H FKR G D+ +SL EALCG + LDGR +
Sbjct: 73 EGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTIP 132
Query: 219 IKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLP 277
+ + +V++P + + EG+P+ + P RG L I F V FPE + +LE VLP
Sbjct: 133 VVFK--DVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQVLP 189
>pdb|2QLD|A Chain A, Human Hsp40 Hdj1
Length = 183
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 75/239 (31%), Positives = 108/239 (45%), Gaps = 63/239 (26%)
Query: 39 VIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLG 98
V H L+VSLE++Y+G +KK MK+S + L
Sbjct: 7 VTHDLRVSLEEIYSGCTKK--------------------------------MKISHKRLN 34
Query: 99 PSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPG 158
P G+ + E K+L + V+KG + G KITFP
Sbjct: 35 PD-----------------------------GKSIRNEDKILTIEVKKGWKEGTKITFPK 65
Query: 159 EADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLL 218
E D+ + + DIVFVL+ K H FKR G D+ +SL EALCG + LDGR +
Sbjct: 66 EGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTIP 125
Query: 219 IKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLP 277
+ + +V++P + + EG+P+ + P RG L I F V FPE + +LE VLP
Sbjct: 126 VVFK--DVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQVLP 182
>pdb|3AGX|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain
pdb|3AGX|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain
pdb|3AGY|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
pdb|3AGY|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
Length = 181
Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 75/239 (31%), Positives = 108/239 (45%), Gaps = 63/239 (26%)
Query: 39 VIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLG 98
V H L+VSLE++Y+G +KK MK+S + L
Sbjct: 5 VTHDLRVSLEEIYSGCTKK--------------------------------MKISHKRLN 32
Query: 99 PSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPG 158
P G+ + E K+L + V+KG + G KITFP
Sbjct: 33 PD-----------------------------GKSIRNEDKILTIEVKKGWKEGTKITFPK 63
Query: 159 EADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLL 218
E D+ + + DIVFVL+ K H FKR G D+ +SL EALCG + LDGR +
Sbjct: 64 EGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTIP 123
Query: 219 IKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLP 277
+ + +V++P + + EG+P+ + P RG L I F V FPE + +LE VLP
Sbjct: 124 VVFK--DVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQVLP 180
>pdb|2Q2G|A Chain A, Crystal Structure Of Dimerization Domain Of Hsp40 From
Cryptosporidium Parvum, Cgd2_1800
pdb|2Q2G|B Chain B, Crystal Structure Of Dimerization Domain Of Hsp40 From
Cryptosporidium Parvum, Cgd2_1800
Length = 180
Score = 104 bits (259), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 56/146 (38%), Positives = 88/146 (60%), Gaps = 3/146 (2%)
Query: 132 KVIQEKKVLEVIVEKGMQNGQKITFPGEAD-EAPDTVTGDIVFVLQQKEHPKFKRKGDDL 190
KV E+ ++EV ++ G ++G K+T+ GE D E+P T GD+V ++Q K HP+F R L
Sbjct: 36 KVRNEENIVEVEIKPGWKDGTKLTYSGEGDQESPGTSPGDLVLIIQTKTHPRFTRDDCHL 95
Query: 191 FVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRG 250
+ T+ L AL GF +T LD R L I + E+V P K + +EG P+ +P +G
Sbjct: 96 IXKVTIPLVRALTGFTCPVTTLDNRNLQIPIK--EIVNPKTRKIVPNEGXPIKNQPGQKG 153
Query: 251 KLYIHFTVDFPESLSPDQCKMLETVL 276
L + F + FP+SL+P+Q K+++ L
Sbjct: 154 DLILEFDICFPKSLTPEQKKLIKEAL 179
>pdb|1C3G|A Chain A, S. Cerevisiae Heat Shock Protein 40 Sis1
Length = 170
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 79/147 (53%), Gaps = 5/147 (3%)
Query: 129 KGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIV-FVLQQKEHPKFKRKG 187
KG EK +++ ++ G + G KIT+ + D P T + FV+Q+K HP FKR G
Sbjct: 27 KGPHGASEKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPNFKRDG 86
Query: 188 DDLFVEHTLSLTEALCGFQFVITHLDGRQL-LIKSQPGEVVKPDQFKAINDEGMPMYQRP 246
DDL LS E+L GF I +DGR L L + QP V+P Q +GMP + P
Sbjct: 87 DDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQP---VQPSQTSTYPGQGMPTPKNP 143
Query: 247 FMRGKLYIHFTVDFPESLSPDQCKMLE 273
RG L + + VD+P SL+ Q + ++
Sbjct: 144 SQRGNLIVKYKVDYPISLNDAQKRAID 170
>pdb|2B26|A Chain A, The Crystal Structure Of The Protein Complex Of Yeast
Hsp40 Sis1 And Hsp70 Ssa1
pdb|2B26|B Chain B, The Crystal Structure Of The Protein Complex Of Yeast
Hsp40 Sis1 And Hsp70 Ssa1
pdb|2B26|C Chain C, The Crystal Structure Of The Protein Complex Of Yeast
Hsp40 Sis1 And Hsp70 Ssa1
Length = 173
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 79/147 (53%), Gaps = 5/147 (3%)
Query: 129 KGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIV-FVLQQKEHPKFKRKG 187
KG EK +++ ++ G + G KIT+ + D P T + FV+Q+K HP FKR G
Sbjct: 27 KGPHGASEKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPNFKRDG 86
Query: 188 DDLFVEHTLSLTEALCGFQFVITHLDGRQL-LIKSQPGEVVKPDQFKAINDEGMPMYQRP 246
DDL LS E+L GF I +DGR L L + QP V+P Q +GMP + P
Sbjct: 87 DDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQP---VQPSQTSTYPGQGMPTPKNP 143
Query: 247 FMRGKLYIHFTVDFPESLSPDQCKMLE 273
RG L + + VD+P SL+ Q + ++
Sbjct: 144 SQRGNLIVKYKVDYPISLNDAQKRAID 170
>pdb|1XAO|A Chain A, Hsp40-Ydj1 Dimerization Domain
pdb|1XAO|B Chain B, Hsp40-Ydj1 Dimerization Domain
Length = 121
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 60/113 (53%), Gaps = 4/113 (3%)
Query: 183 FKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPM 242
FKR GDDL E + L A+ G +F + H+ G L + PGEV+ P K I +GMP+
Sbjct: 2 FKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPI 61
Query: 243 YQRPFMRGKLYIHFTVDFPES--LSPDQCKMLETVLPPRTSVQL-TDMELDEC 292
+ G L I FT+ FPE+ S + K LE +LPPR + +DEC
Sbjct: 62 -PKYGGYGNLIIKFTIKFPENHFTSEENLKKLEEILPPRIVPAIPKKATVDEC 113
>pdb|2IWI|A Chain A, Crystal Structure Of The Human Pim2 In Complex With A
Ruthenium Organometallic Ligand Ru1
pdb|2IWI|B Chain B, Crystal Structure Of The Human Pim2 In Complex With A
Ruthenium Organometallic Ligand Ru1
Length = 312
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 14/104 (13%)
Query: 210 THLDGRQLLIKSQPGEVVKPDQFKA----INDEGMPMYQR-----PFMRGKLYIHFTVDF 260
T DG ++ P E + Q+ A + G+ +Y PF R + + + F
Sbjct: 196 TDFDGTRVY---SPPEWISRHQYHALPATVWSLGILLYDMVCGDIPFERDQEILEAELHF 252
Query: 261 PESLSPDQCKMLETVLPPRTSVQ--LTDMELDECEETTLHDVNI 302
P +SPD C ++ L P+ S + L ++ LD +T DV +
Sbjct: 253 PAHVSPDCCALIRRCLAPKPSSRPSLEEILLDPWMQTPAEDVPL 296
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 31.2 bits (69), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
Query: 138 KVLEVIVEKGMQNGQKITFPGEADEAPDT-VTGDIVFVLQQKEHPKFKRKGDDLFVEHTL 196
K L V + G+ +GQ+I G+ + GD+ V+ HP F G +L + L
Sbjct: 181 KTLNVKIPAGVVDGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGHNLEIVLPL 240
Query: 197 SLTEALCGFQFVITHLDGRQLLIKSQPG 224
+ EA G + + L +L+ PG
Sbjct: 241 APWEAALGAKVTVPTLK-ESILLTVPPG 267
>pdb|1Y9I|A Chain A, Crystal Structure Of Low Temperature Requirement C Protein
From Listeria Monocytogenes
pdb|1Y9I|B Chain B, Crystal Structure Of Low Temperature Requirement C Protein
From Listeria Monocytogenes
pdb|1Y9I|C Chain C, Crystal Structure Of Low Temperature Requirement C Protein
From Listeria Monocytogenes
pdb|1Y9I|D Chain D, Crystal Structure Of Low Temperature Requirement C Protein
From Listeria Monocytogenes
Length = 178
Score = 31.2 bits (69), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 6/102 (5%)
Query: 169 GDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVK 228
++V LQQK HP + VEH L E L G QL + ++ GE+V+
Sbjct: 29 AELVLFLQQKYHPGLELDICRQNVEHVLRKREVQNAV------LTGIQLDVXAEKGELVQ 82
Query: 229 PDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCK 270
P Q DEG+ + ++ ++ F D+ K
Sbjct: 83 PLQNIISADEGLYGVDEILALSIVNVYGSIGFTNYGYIDKVK 124
>pdb|3MDZ|A Chain A, Crystal Structure Of Human Carbonic Anhydrase Vii [isoform
1], Ca7
Length = 281
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 149 QNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFV 192
N +K + GEA APD + VF+ EHP R D L++
Sbjct: 144 WNAKKYSTFGEAASAPDGLAVVGVFLETGDEHPSMNRLTDALYM 187
>pdb|3ML5|A Chain A, Crystal Structure Of The C183sC217S MUTANT OF HUMAN CA VII
IN COMPLEX With Acetazolamide
Length = 269
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 149 QNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFV 192
N +K + GEA APD + VF+ EHP R D L++
Sbjct: 130 WNAKKYSTFGEAASAPDGLAVVGVFLETGDEHPSMNRLTDALYM 173
>pdb|3LXT|A Chain A, Crystal Structure Of Glutathione S Transferase From
Pseudomonas Fluorescens
pdb|3LXT|B Chain B, Crystal Structure Of Glutathione S Transferase From
Pseudomonas Fluorescens
pdb|3LXT|C Chain C, Crystal Structure Of Glutathione S Transferase From
Pseudomonas Fluorescens
pdb|3LXT|D Chain D, Crystal Structure Of Glutathione S Transferase From
Pseudomonas Fluorescens
pdb|3M0F|A Chain A, Crystal Structure Of Glutathione S Transferase In Complex
With Glutathione From Pseudomonas Fluorescens
pdb|3M0F|B Chain B, Crystal Structure Of Glutathione S Transferase In Complex
With Glutathione From Pseudomonas Fluorescens
Length = 213
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 10/73 (13%)
Query: 230 DQFKAINDEGMPMYQRPFMR---GKLYI--HFTVDFPESLSPDQCKMLETVLPPRT-SVQ 283
+QFKAIN P+ + P + G++ + +D+ E+L+ Q ++ T LP R ++
Sbjct: 40 EQFKAIN----PVVKAPTLVCEGGEVLMDSSLIIDYLETLAGPQRSLMPTALPQRLRELR 95
Query: 284 LTDMELDECEETT 296
L + L CE++
Sbjct: 96 LVGLALAACEKSV 108
>pdb|2ZO9|B Chain B, Malonate-Bound Structure Of The Glycerophosphodiesterase
From Enterobacter Aerogenes (Gpdq) And Characterization
Of The Native Fe2+ Metal Ion Preference
pdb|2ZO9|C Chain C, Malonate-Bound Structure Of The Glycerophosphodiesterase
From Enterobacter Aerogenes (Gpdq) And Characterization
Of The Native Fe2+ Metal Ion Preference
pdb|2ZOA|A Chain A, Malonate-bound Structure Of The Glycerophosphodiesterase
From Enterobacter Aerogenes (gpdq) Collected At 1.280
Angstrom
pdb|2ZOA|B Chain B, Malonate-bound Structure Of The Glycerophosphodiesterase
From Enterobacter Aerogenes (gpdq) Collected At 1.280
Angstrom
pdb|3D03|A Chain A, 1.9a Structure Of Glycerophoshphodiesterase (Gpdq) From
Enterobacter Aerogenes
pdb|3D03|B Chain B, 1.9a Structure Of Glycerophoshphodiesterase (Gpdq) From
Enterobacter Aerogenes
pdb|3D03|C Chain C, 1.9a Structure Of Glycerophoshphodiesterase (Gpdq) From
Enterobacter Aerogenes
pdb|3D03|D Chain D, 1.9a Structure Of Glycerophoshphodiesterase (Gpdq) From
Enterobacter Aerogenes
pdb|3D03|E Chain E, 1.9a Structure Of Glycerophoshphodiesterase (Gpdq) From
Enterobacter Aerogenes
pdb|3D03|F Chain F, 1.9a Structure Of Glycerophoshphodiesterase (Gpdq) From
Enterobacter Aerogenes
Length = 274
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 28/81 (34%), Gaps = 22/81 (27%)
Query: 191 FVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRG 250
VE SLT CG +T RQ LI + PG V +Q P
Sbjct: 181 LVERFPSLTRIFCGHNHSLTMTQYRQALISTLPGTV----------------HQVP---- 220
Query: 251 KLYIHFTVDFPESLSPDQCKM 271
Y H D LSP C M
Sbjct: 221 --YCHADTDPYYDLSPASCLM 239
>pdb|2DXL|A Chain A, Glycerophosphodiesterase From Enterobacter Aerogenes
pdb|2DXL|B Chain B, Glycerophosphodiesterase From Enterobacter Aerogenes
pdb|2DXN|A Chain A, Glycerophosphodiesterase From Enterobacter Aerogenes
pdb|2DXN|B Chain B, Glycerophosphodiesterase From Enterobacter Aerogenes
Length = 274
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 17/36 (47%)
Query: 191 FVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEV 226
VE SLT CG +T RQ LI + PG V
Sbjct: 181 LVERFPSLTRIFCGHNHSLTMTQYRQALISTLPGTV 216
>pdb|2VRT|A Chain A, Crystal Structure Of E. Coli Rnase E Possessing M1 Rna
Fragments - Catalytic Domain
pdb|2VRT|B Chain B, Crystal Structure Of E. Coli Rnase E Possessing M1 Rna
Fragments - Catalytic Domain
pdb|2VRT|C Chain C, Crystal Structure Of E. Coli Rnase E Possessing M1 Rna
Fragments - Catalytic Domain
pdb|2VRT|D Chain D, Crystal Structure Of E. Coli Rnase E Possessing M1 Rna
Fragments - Catalytic Domain
Length = 509
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 90 MKVSIRHLGPSMIQQMQHPCNECKGTGETINDKD 123
+++S + L PS+ + H C C GTG T+ D +
Sbjct: 385 LEMSRQRLSPSLGESSHHVCPRCSGTG-TVRDNE 417
>pdb|2VMK|A Chain A, Crystal Structure Of E. Coli Rnase E Apoprotein -
Catalytic Domain
pdb|2VMK|B Chain B, Crystal Structure Of E. Coli Rnase E Apoprotein -
Catalytic Domain
pdb|2VMK|C Chain C, Crystal Structure Of E. Coli Rnase E Apoprotein -
Catalytic Domain
pdb|2VMK|D Chain D, Crystal Structure Of E. Coli Rnase E Apoprotein -
Catalytic Domain
Length = 515
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 90 MKVSIRHLGPSMIQQMQHPCNECKGTGETINDKD 123
+++S + L PS+ + H C C GTG T+ D +
Sbjct: 385 LEMSRQRLSPSLGESSHHVCPRCSGTG-TVRDNE 417
>pdb|2BX2|L Chain L, Catalytic Domain Of E. Coli Rnase E
pdb|2C0B|L Chain L, Catalytic Domain Of E. Coli Rnase E In Complex With 13-Mer
Rna
pdb|2C4R|L Chain L, Catalytic Domain Of E. Coli Rnase E
Length = 517
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 90 MKVSIRHLGPSMIQQMQHPCNECKGTGETINDKD 123
+++S + L PS+ + H C C GTG T+ D +
Sbjct: 392 LEMSRQRLSPSLGESSHHVCPRCSGTG-TVRDNE 424
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.137 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,498,167
Number of Sequences: 62578
Number of extensions: 305808
Number of successful extensions: 739
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 707
Number of HSP's gapped (non-prelim): 27
length of query: 335
length of database: 14,973,337
effective HSP length: 99
effective length of query: 236
effective length of database: 8,778,115
effective search space: 2071635140
effective search space used: 2071635140
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)