Query 019828
Match_columns 335
No_of_seqs 238 out of 1795
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 04:51:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019828.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019828hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00037 DnaJ_C chaperone prot 100.0 2.5E-76 5.3E-81 582.6 35.1 318 7-335 100-421 (421)
2 COG0484 DnaJ DnaJ-class molecu 100.0 7.3E-65 1.6E-69 486.2 30.7 260 9-279 90-351 (371)
3 PRK14296 chaperone protein Dna 100.0 2.6E-62 5.7E-67 477.7 31.6 259 9-278 100-361 (372)
4 PRK14278 chaperone protein Dna 100.0 2.2E-60 4.7E-65 465.3 32.2 262 9-278 87-350 (378)
5 PRK14298 chaperone protein Dna 100.0 5.2E-60 1.1E-64 462.3 31.0 259 8-277 90-350 (377)
6 PRK14277 chaperone protein Dna 100.0 7.4E-60 1.6E-64 462.9 32.1 261 9-277 101-364 (386)
7 PRK14276 chaperone protein Dna 100.0 8.3E-60 1.8E-64 461.7 31.0 259 9-277 95-355 (380)
8 PRK14288 chaperone protein Dna 100.0 7.6E-60 1.6E-64 460.2 30.4 237 32-278 109-345 (369)
9 KOG0712 Molecular chaperone (D 100.0 9.1E-61 2E-65 452.3 22.3 255 14-276 83-337 (337)
10 PRK14287 chaperone protein Dna 100.0 1.7E-59 3.7E-64 458.0 31.9 261 8-278 86-348 (371)
11 PRK14280 chaperone protein Dna 100.0 1.6E-59 3.6E-64 459.0 31.6 259 9-277 92-352 (376)
12 PRK14286 chaperone protein Dna 100.0 2E-59 4.3E-64 457.7 31.1 260 9-278 95-357 (372)
13 PRK14297 chaperone protein Dna 100.0 5.6E-59 1.2E-63 456.0 30.8 263 9-279 95-359 (380)
14 PRK14281 chaperone protein Dna 100.0 1.1E-58 2.3E-63 456.0 31.7 237 34-277 134-371 (397)
15 PRK14285 chaperone protein Dna 100.0 1.1E-58 2.4E-63 451.3 30.4 259 9-280 95-355 (365)
16 TIGR02349 DnaJ_bact chaperone 100.0 1.4E-58 3E-63 449.7 30.9 261 9-277 90-352 (354)
17 PRK14282 chaperone protein Dna 100.0 2.8E-58 6E-63 449.5 31.3 259 12-278 103-363 (369)
18 PRK14279 chaperone protein Dna 100.0 3.3E-58 7.2E-63 451.7 30.9 251 12-277 125-377 (392)
19 PRK14284 chaperone protein Dna 100.0 5.5E-58 1.2E-62 450.3 30.2 257 11-277 105-365 (391)
20 PRK14295 chaperone protein Dna 100.0 3.8E-57 8.3E-62 443.8 31.3 235 32-277 135-371 (389)
21 PRK14301 chaperone protein Dna 100.0 2.8E-57 6.1E-62 442.7 29.9 255 10-277 93-349 (373)
22 PRK14290 chaperone protein Dna 100.0 8.4E-57 1.8E-61 438.5 31.1 265 8-280 90-358 (365)
23 PRK14293 chaperone protein Dna 100.0 1.4E-56 3.1E-61 438.2 31.3 264 9-278 86-354 (374)
24 PRK10767 chaperone protein Dna 100.0 1.3E-56 2.7E-61 438.3 30.5 253 10-277 93-347 (371)
25 PRK14300 chaperone protein Dna 100.0 3.3E-56 7.2E-61 435.1 31.7 258 9-277 90-351 (372)
26 PRK14294 chaperone protein Dna 100.0 1.9E-56 4.2E-61 436.1 29.9 257 9-277 91-349 (366)
27 PRK14292 chaperone protein Dna 100.0 1.6E-55 3.5E-60 430.5 31.7 261 8-277 85-347 (371)
28 PRK14291 chaperone protein Dna 100.0 3.6E-55 7.9E-60 429.2 31.3 258 9-277 92-369 (382)
29 PRK14289 chaperone protein Dna 100.0 7.2E-55 1.6E-59 427.9 31.9 239 33-278 124-364 (386)
30 PRK14283 chaperone protein Dna 100.0 6.3E-55 1.4E-59 427.1 29.7 238 33-277 116-355 (378)
31 PRK10266 curved DNA-binding pr 100.0 2.1E-37 4.6E-42 295.6 25.7 200 9-278 93-293 (306)
32 PRK14299 chaperone protein Dna 100.0 1.9E-37 4E-42 294.0 23.4 184 9-277 97-285 (291)
33 TIGR03835 termin_org_DnaJ term 100.0 9.6E-33 2.1E-37 280.7 19.4 158 35-259 655-812 (871)
34 PF01556 CTDII: DnaJ C termina 99.9 2.1E-22 4.5E-27 155.8 7.1 81 189-271 1-81 (81)
35 KOG0713 Molecular chaperone (D 99.8 4E-20 8.8E-25 174.0 5.2 227 11-266 100-328 (336)
36 KOG0715 Molecular chaperone (D 99.7 8.7E-17 1.9E-21 152.1 8.7 171 8-200 117-288 (288)
37 PF00684 DnaJ_CXXCXGXG: DnaJ c 99.6 3.7E-15 8.1E-20 110.8 6.9 65 66-132 1-66 (66)
38 COG0484 DnaJ DnaJ-class molecu 99.4 3.4E-13 7.4E-18 130.3 8.6 175 9-277 86-280 (371)
39 PRK14282 chaperone protein Dna 99.3 6.5E-12 1.4E-16 123.2 6.7 57 138-194 303-360 (369)
40 PRK14290 chaperone protein Dna 99.2 1.8E-11 3.9E-16 119.9 6.4 130 50-194 154-353 (365)
41 PRK14294 chaperone protein Dna 99.2 2.4E-11 5.3E-16 119.0 6.6 58 138-195 290-348 (366)
42 PRK14285 chaperone protein Dna 99.2 3.2E-11 7E-16 118.1 6.6 131 49-193 150-349 (365)
43 PRK14289 chaperone protein Dna 99.2 3.3E-11 7.2E-16 118.9 6.3 113 80-268 155-277 (386)
44 PRK14298 chaperone protein Dna 99.1 5.7E-11 1.2E-15 116.8 5.4 57 138-194 291-348 (377)
45 PRK14300 chaperone protein Dna 99.1 1E-10 2.2E-15 114.9 6.7 50 138-187 292-342 (372)
46 PRK14287 chaperone protein Dna 99.1 2.1E-10 4.7E-15 112.5 8.9 73 201-278 199-279 (371)
47 PRK10767 chaperone protein Dna 99.1 1.3E-10 2.7E-15 114.2 5.8 57 138-194 288-345 (371)
48 TIGR02349 DnaJ_bact chaperone 99.1 1.9E-10 4.1E-15 112.3 6.3 55 138-192 293-348 (354)
49 PRK14293 chaperone protein Dna 99.1 2.9E-10 6.2E-15 111.8 7.4 51 215-268 216-266 (374)
50 PRK14279 chaperone protein Dna 99.1 2.3E-10 5E-15 113.1 6.5 122 49-184 177-365 (392)
51 PRK14284 chaperone protein Dna 99.0 2.5E-10 5.4E-15 112.9 6.1 56 138-193 306-362 (391)
52 PRK14278 chaperone protein Dna 99.0 4.8E-10 1E-14 110.3 7.4 122 49-184 143-337 (378)
53 PRK14301 chaperone protein Dna 99.0 3.5E-10 7.7E-15 111.1 5.9 56 138-193 290-346 (373)
54 PRK14295 chaperone protein Dna 99.0 6.9E-10 1.5E-14 109.6 7.1 122 49-184 170-359 (389)
55 PRK14297 chaperone protein Dna 99.0 1.5E-09 3.3E-14 106.9 8.5 109 80-264 149-267 (380)
56 PRK14288 chaperone protein Dna 98.9 1.1E-09 2.4E-14 107.4 6.8 126 49-189 144-337 (369)
57 PRK14296 chaperone protein Dna 98.9 2.4E-09 5.1E-14 105.2 8.5 62 215-279 222-292 (372)
58 PRK14286 chaperone protein Dna 98.9 2.4E-09 5.2E-14 105.2 8.5 107 80-262 151-263 (372)
59 PRK14276 chaperone protein Dna 98.9 2.1E-09 4.6E-14 105.9 7.8 61 215-278 219-287 (380)
60 PRK14299 chaperone protein Dna 98.9 3.6E-09 7.8E-14 100.7 8.5 87 183-279 125-219 (291)
61 PRK14280 chaperone protein Dna 98.9 3.3E-09 7.1E-14 104.4 8.3 61 215-278 216-284 (376)
62 PRK14292 chaperone protein Dna 98.9 2.5E-09 5.4E-14 105.1 7.3 50 213-267 211-260 (371)
63 PRK14277 chaperone protein Dna 98.9 3E-09 6.5E-14 105.0 7.9 46 214-262 227-272 (386)
64 PLN03165 chaperone protein dna 98.9 2.9E-09 6.3E-14 86.7 6.4 60 63-136 41-100 (111)
65 PRK14283 chaperone protein Dna 98.9 3.8E-09 8.2E-14 104.1 8.4 48 214-264 218-265 (378)
66 PRK14281 chaperone protein Dna 98.9 2.2E-09 4.7E-14 106.4 6.6 121 49-184 167-359 (397)
67 PRK14291 chaperone protein Dna 98.8 1.2E-08 2.6E-13 100.6 8.0 44 138-181 302-346 (382)
68 PTZ00037 DnaJ_C chaperone prot 98.8 9.2E-09 2E-13 102.4 6.5 43 138-180 301-347 (421)
69 PRK10266 curved DNA-binding pr 98.7 2.8E-08 6.1E-13 95.2 8.4 75 185-263 115-202 (306)
70 KOG0714 Molecular chaperone (D 98.7 1.4E-07 3E-12 88.0 10.2 106 135-242 197-305 (306)
71 PF01556 CTDII: DnaJ C termina 98.4 4.5E-07 9.7E-12 69.9 5.9 47 138-184 27-75 (81)
72 TIGR02642 phage_xxxx uncharact 98.4 6.4E-07 1.4E-11 79.5 5.7 51 106-157 99-149 (186)
73 KOG0712 Molecular chaperone (D 97.9 3.2E-05 6.8E-10 74.5 7.6 54 128-181 267-324 (337)
74 COG1107 Archaea-specific RecJ- 97.7 1.7E-05 3.8E-10 80.1 2.7 68 65-133 4-79 (715)
75 KOG2813 Predicted molecular ch 97.4 0.00014 3.1E-09 68.7 4.6 60 63-143 198-277 (406)
76 TIGR03835 termin_org_DnaJ term 97.4 0.00063 1.4E-08 71.4 9.3 94 181-279 650-764 (871)
77 PF00684 DnaJ_CXXCXGXG: DnaJ c 97.3 8.2E-05 1.8E-09 55.1 1.2 43 62-116 14-66 (66)
78 COG1107 Archaea-specific RecJ- 96.3 0.0047 1E-07 63.0 4.6 46 63-120 18-82 (715)
79 KOG2813 Predicted molecular ch 96.2 0.0028 6E-08 60.2 2.1 74 49-134 170-257 (406)
80 PLN03165 chaperone protein dna 95.9 0.0048 1.1E-07 50.4 2.3 40 65-120 54-100 (111)
81 TIGR02642 phage_xxxx uncharact 95.4 0.0089 1.9E-07 53.3 2.1 29 80-119 100-128 (186)
82 KOG2824 Glutaredoxin-related p 87.7 0.5 1.1E-05 44.4 3.2 64 47-129 217-280 (281)
83 KOG0715 Molecular chaperone (D 87.6 0.57 1.2E-05 44.7 3.6 39 216-265 234-272 (288)
84 cd03031 GRX_GRX_like Glutaredo 83.3 1 2.2E-05 38.7 2.8 22 65-91 101-122 (147)
85 COG0178 UvrA Excinuclease ATPa 80.4 1.9 4.2E-05 46.4 4.1 32 80-115 731-762 (935)
86 PRK14714 DNA polymerase II lar 79.2 4.4 9.6E-05 45.6 6.5 68 44-132 641-719 (1337)
87 TIGR00630 uvra excinuclease AB 78.5 1.5 3.3E-05 48.3 2.8 33 80-116 737-769 (924)
88 PRK04023 DNA polymerase II lar 74.6 4.2 9.1E-05 44.8 4.7 72 45-139 608-680 (1121)
89 PRK00349 uvrA excinuclease ABC 73.9 3.1 6.8E-05 46.0 3.6 18 80-97 739-756 (943)
90 KOG2824 Glutaredoxin-related p 70.5 4.2 9.1E-05 38.3 3.1 40 80-135 230-275 (281)
91 PRK00635 excinuclease ABC subu 68.6 3.5 7.6E-05 48.5 2.6 24 250-276 1721-1745(1809)
92 cd03031 GRX_GRX_like Glutaredo 68.5 5.2 0.00011 34.3 3.1 39 80-134 100-145 (147)
93 COG2214 CbpA DnaJ-class molecu 65.3 9.2 0.0002 33.3 4.2 49 141-190 179-227 (237)
94 TIGR00630 uvra excinuclease AB 65.2 3.4 7.4E-05 45.6 1.6 31 107-137 737-774 (924)
95 TIGR00310 ZPR1_znf ZPR1 zinc f 59.1 29 0.00062 31.2 6.2 35 81-115 2-39 (192)
96 smart00709 Zpr1 Duplicated dom 54.6 39 0.00084 29.4 6.1 35 81-115 2-38 (160)
97 TIGR00340 zpr1_rel ZPR1-relate 49.7 95 0.0021 27.1 7.8 26 205-236 72-97 (163)
98 cd05792 S1_eIF1AD_like S1_eIF1 48.7 86 0.0019 23.9 6.4 23 201-223 8-31 (78)
99 COG1198 PriA Primosomal protei 48.1 23 0.0005 38.2 4.4 61 52-131 419-484 (730)
100 PF02814 UreE_N: UreE urease a 46.6 46 0.001 24.1 4.6 32 206-237 30-61 (65)
101 PF12991 DUF3875: Domain of un 46.5 24 0.00053 25.0 2.8 25 248-272 26-52 (54)
102 TIGR00757 RNaseEG ribonuclease 44.0 14 0.0003 37.2 1.8 32 89-120 372-404 (414)
103 PRK00635 excinuclease ABC subu 42.1 10 0.00022 44.8 0.6 16 264-279 1700-1717(1809)
104 PF13719 zinc_ribbon_5: zinc-r 41.1 13 0.00029 23.9 0.8 7 81-87 4-10 (37)
105 PRK14873 primosome assembly pr 40.7 36 0.00078 36.4 4.4 60 51-131 367-431 (665)
106 PF03833 PolC_DP2: DNA polymer 39.0 10 0.00022 41.2 0.0 62 56-140 649-710 (900)
107 PF04246 RseC_MucC: Positive r 38.0 45 0.00097 27.7 3.8 22 137-158 41-62 (135)
108 PRK08351 DNA-directed RNA poly 38.0 31 0.00067 25.2 2.4 26 108-137 5-30 (61)
109 COG2093 DNA-directed RNA polym 34.9 31 0.00068 25.2 2.0 22 125-146 21-42 (64)
110 PTZ00111 DNA replication licen 34.4 1.6E+02 0.0035 32.7 8.2 14 263-276 568-581 (915)
111 PRK00349 uvrA excinuclease ABC 34.4 19 0.00042 40.0 1.2 51 40-90 705-772 (943)
112 COG5216 Uncharacterized conser 34.1 46 0.001 24.1 2.7 14 43-56 31-44 (67)
113 PRK03564 formate dehydrogenase 33.5 36 0.00077 32.9 2.8 10 63-72 187-196 (309)
114 PF07092 DUF1356: Protein of u 33.3 21 0.00047 33.0 1.2 14 107-120 39-52 (238)
115 PRK14559 putative protein seri 33.3 25 0.00055 37.4 1.9 49 64-131 2-50 (645)
116 PRK00464 nrdR transcriptional 32.8 46 0.001 28.8 3.1 35 81-115 2-37 (154)
117 TIGR00523 eIF-1A eukaryotic/ar 32.7 1.9E+02 0.004 23.1 6.3 59 204-275 31-94 (99)
118 PF10080 DUF2318: Predicted me 32.4 74 0.0016 25.6 4.0 24 106-129 35-59 (102)
119 PRK12380 hydrogenase nickel in 31.3 62 0.0013 26.3 3.5 25 107-131 71-95 (113)
120 PRK11712 ribonuclease G; Provi 31.2 23 0.00049 36.5 1.1 32 89-120 384-416 (489)
121 PF01155 HypA: Hydrogenase exp 31.0 31 0.00067 28.1 1.6 26 107-132 71-96 (113)
122 PRK02935 hypothetical protein; 30.5 25 0.00055 28.4 1.0 25 105-129 69-93 (110)
123 PLN00208 translation initiatio 30.4 1.9E+02 0.0042 24.7 6.4 58 204-275 44-106 (145)
124 cd05793 S1_IF1A S1_IF1A: Trans 30.4 2.2E+02 0.0047 21.5 6.1 60 202-275 10-74 (77)
125 TIGR00100 hypA hydrogenase nic 30.4 70 0.0015 26.1 3.7 6 81-86 72-77 (115)
126 PRK05580 primosome assembly pr 30.2 66 0.0014 34.4 4.4 64 50-132 363-431 (679)
127 PF11023 DUF2614: Protein of u 30.1 22 0.00047 29.1 0.6 26 105-130 68-93 (114)
128 KOG0315 G-protein beta subunit 29.7 38 0.00083 31.9 2.2 32 192-223 18-50 (311)
129 PRK06393 rpoE DNA-directed RNA 29.4 45 0.00097 24.6 2.1 28 107-138 6-33 (64)
130 PRK00488 pheS phenylalanyl-tRN 29.2 49 0.0011 32.4 2.9 32 61-103 258-289 (339)
131 PRK12336 translation initiatio 28.5 1.1E+02 0.0024 27.6 4.9 87 80-175 99-187 (201)
132 PF07092 DUF1356: Protein of u 28.0 24 0.00053 32.7 0.6 14 80-93 39-52 (238)
133 cd02639 R3H_RRM R3H domain of 27.9 75 0.0016 23.0 3.0 22 255-276 17-38 (60)
134 PRK12380 hydrogenase nickel in 27.6 76 0.0016 25.8 3.4 12 108-119 88-99 (113)
135 smart00350 MCM minichromosome 27.5 2.8E+02 0.006 28.5 8.3 14 263-276 311-324 (509)
136 PRK14051 negative regulator Gr 26.6 2.4E+02 0.0051 23.0 5.9 70 169-242 48-119 (123)
137 TIGR00595 priA primosomal prot 26.2 90 0.002 32.1 4.4 62 52-132 197-263 (505)
138 TIGR03655 anti_R_Lar restricti 25.2 1E+02 0.0023 21.3 3.3 11 81-91 3-13 (53)
139 PF01333 Apocytochr_F_C: Apocy 25.1 98 0.0021 25.5 3.5 57 204-263 23-83 (118)
140 PF14354 Lar_restr_allev: Rest 24.9 89 0.0019 21.9 3.0 32 80-114 4-37 (61)
141 PF08273 Prim_Zn_Ribbon: Zinc- 24.8 35 0.00077 22.6 0.8 14 62-75 2-15 (40)
142 PF02426 MIase: Muconolactone 24.8 1.2E+02 0.0026 23.9 3.9 23 252-274 3-25 (91)
143 TIGR00100 hypA hydrogenase nic 24.7 77 0.0017 25.8 3.0 42 50-91 56-98 (115)
144 PF14205 Cys_rich_KTR: Cystein 24.5 1.4E+02 0.0031 21.2 3.8 14 123-136 29-42 (55)
145 PF01155 HypA: Hydrogenase exp 24.4 63 0.0014 26.2 2.4 40 50-89 56-96 (113)
146 KOG0005 Ubiquitin-like protein 24.2 33 0.00071 24.9 0.6 37 206-242 2-38 (70)
147 COG0178 UvrA Excinuclease ATPa 23.7 44 0.00096 36.5 1.6 56 36-91 693-765 (935)
148 TIGR03221 muco_delta muconolac 23.1 1.4E+02 0.0029 23.6 3.9 22 253-274 3-24 (90)
149 PF03589 Antiterm: Antitermina 22.5 20 0.00044 28.4 -0.9 13 80-92 6-18 (95)
150 COG2190 NagE Phosphotransferas 22.2 1.1E+02 0.0024 26.6 3.5 46 207-259 63-111 (156)
151 PF02963 EcoRI: Restriction en 21.9 43 0.00093 30.5 1.0 37 206-243 162-198 (257)
152 PF13248 zf-ribbon_3: zinc-rib 21.9 42 0.00091 19.8 0.6 21 107-129 3-23 (26)
153 PF13453 zf-TFIIB: Transcripti 21.1 1E+02 0.0022 20.1 2.5 6 82-87 2-7 (41)
154 PF08792 A2L_zn_ribbon: A2L zi 20.8 70 0.0015 20.2 1.5 11 81-91 5-15 (33)
155 PRK00398 rpoP DNA-directed RNA 20.8 1.2E+02 0.0026 20.2 2.9 11 123-133 22-32 (46)
156 PTZ00329 eukaryotic translatio 20.3 3.9E+02 0.0084 23.2 6.4 58 204-275 44-106 (155)
157 smart00659 RPOLCX RNA polymera 20.2 1.7E+02 0.0036 19.7 3.4 15 123-137 20-34 (44)
No 1
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=100.00 E-value=2.5e-76 Score=582.62 Aligned_cols=318 Identities=44% Similarity=0.865 Sum_probs=284.5
Q ss_pred CCCchhhhhhhcCCCCCCCCCCCCCCCCCCCceEEEEEeehhhhhcCceeEEeeeeeEecCCCCCCCccCCCcccCCCCC
Q 019828 7 AHDPFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGASMKCSGCQ 86 (335)
Q Consensus 7 ~~~~~diF~~fFgg~~~~~~~~~~~~~~~g~d~~~~l~vtLee~y~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~ 86 (335)
+.++.|+|+.|||++ + ++.+++++.|+.+.|.|||||+|+|+++++.+.+.+.|..|+|+|.......+|+.|+
T Consensus 100 ~~d~~d~f~~~Fggg----~--~~~~~~rg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~ 173 (421)
T PTZ00037 100 PADASDLFDLIFGGG----R--KPGGKKRGEDIVSHLKVTLEQIYNGAMRKLAINKDVICANCEGHGGPKDAFVDCKLCN 173 (421)
T ss_pred CcchhhhHHHhhccc----c--ccccccCCCCEEEEeeeeHHHHhCCCceEEEeeccccccccCCCCCCCCCCccCCCCC
Confidence 346789999999742 1 1233467999999999999999999999999999999999999998776668999999
Q ss_pred CccEEEEEEecCCccceeeeecCCCCCceeEEEcCcCCCCCCCCceEEEeeEEEEEEecCCCcCCCeEEecCCCCCCCCC
Q 019828 87 GSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAPDT 166 (335)
Q Consensus 87 G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~~~e~k~l~V~Ip~G~~~g~~i~~~g~G~~~~~~ 166 (335)
|+|+++.++++|| |++|++++|+.|+|+|+++.++++|+.|+|++++.+.+.|+|+|||||.+|++|+|+|+|++.++.
T Consensus 174 G~G~~~~~~~~g~-~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~dG~~I~~~G~Gd~~~~~ 252 (421)
T PTZ00037 174 GQGIRVQIRQMGS-MIHQTQSTCNSCNGQGKIIPESKKCKNCSGKGVKKTRKILEVNIDKGVPNQHKITFHGEADEKPNE 252 (421)
T ss_pred CCCeEEEEEeecc-eeeEEEEeCCCCCCcceeccccccCCcCCCcceeeeeeEEEEeeCCCCCCCcEEEEecccCCCCCC
Confidence 9999999999999 999999999999999999998999999999999999999999999999999999999999998888
Q ss_pred CcccEEEEEEeecCCCcccccccceeeccCCHHHHhCCcEEEEecCCCcEEEEEeCCCccccCCcEEEEcCCCCCCCCCC
Q 019828 167 VTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRP 246 (335)
Q Consensus 167 ~~GDliv~i~~~~h~~F~R~g~dL~~~~~I~l~eAl~G~~~~i~~ldGr~l~v~ip~g~vi~~g~~~~i~geGmP~~~~~ 246 (335)
.||||||+|++++|+.|+|+|+|||++++|||+|||+|+++.|+||||+.|.|++|||+|++||++++|+|+|||.++++
T Consensus 253 ~pGDLiv~I~~~ph~~F~R~G~DL~~~~~Isl~eAllG~~i~I~tLdG~~l~I~ip~g~vt~pg~~~~I~geGmP~~~~~ 332 (421)
T PTZ00037 253 IPGNVVFILNEKPHDTFKREGGDLFITKKISLYEALTGFVFYITHLDGRKLLVNTPPGEVVKPGDIKVINNEGMPTYKSP 332 (421)
T ss_pred CCCcEEEEEEecCCCCcEEeCCeEEEEEeCCHHHHhcCCEEEeeCCCCCeEEEEeCCCcccCCCcEEEeCCCCcccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987655
Q ss_pred CCCCceEEEEEEeCC--CCCCHHHHHHHHhhCCCCCCCCCccCccccceeeeeecCChhHHHHHHhhhcccccccCCC--
Q 019828 247 FMRGKLYIHFTVDFP--ESLSPDQCKMLETVLPPRTSVQLTDMELDECEETTLHDVNIEEEMRRKQQAAQEAYDEDDD-- 322 (335)
Q Consensus 247 ~~~GdL~i~f~V~fP--~~l~~~~~~~L~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 322 (335)
+.+|||||+|+|.|| +.|+++|+++|++|||.++.... +++.+++|+++|+++|+++...+ .++++|+||+|
T Consensus 333 ~~rGDL~V~~~V~~P~~~~Ls~~qk~ll~~l~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 408 (421)
T PTZ00037 333 FKKGNLYVTFEVIFPVDRKFTNEEKEILKSLFPQNPEEKK-DLEDTEIEVVTAQNVDPEEVKDR---DQKQQYQEDEDDE 408 (421)
T ss_pred CCCCCEEEEEEEEcCCCCCCCHHHHHHHHHhccCCCCCCC-CCCcccceeEecccCCHHHhhhh---HHHHhhccccccc
Confidence 679999999999999 88999999999999987655443 55678899999999999875443 23455544433
Q ss_pred CCCCCCCCCCcCC
Q 019828 323 MQGGAQRVQCAQQ 335 (335)
Q Consensus 323 ~~~~~~~~~C~~q 335 (335)
+++++++||||||
T Consensus 409 ~~~~~~~v~c~~q 421 (421)
T PTZ00037 409 HHQEGERVACRQQ 421 (421)
T ss_pred cCCCCCccccCCC
Confidence 2346789999998
No 2
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.3e-65 Score=486.22 Aligned_cols=260 Identities=35% Similarity=0.678 Sum_probs=239.1
Q ss_pred CchhhhhhhcCCCCCCCCCCCCCCCCCCCceEEEEEeehhhhhcCceeEEeeeeeEecCCCCCCCccCCC-cccCCCCCC
Q 019828 9 DPFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGA-SMKCSGCQG 87 (335)
Q Consensus 9 ~~~diF~~fFgg~~~~~~~~~~~~~~~g~d~~~~l~vtLee~y~G~~~~i~~~r~~~C~~C~G~G~~~~~-~~~C~~C~G 87 (335)
++.|||++||||+++ +++++++++++.|+.+.|+|||+|+|+|++++|.+++.++|++|+|+|++.++ ..+|++|+|
T Consensus 90 ~~~DIF~~~FgGg~~--~~~~~~~~~rG~Dl~~~l~isleEa~~G~~~~i~~~~~~~C~~C~GsGak~gt~~~tC~tC~G 167 (371)
T COG0484 90 DFGDIFEDFFGGGGG--GRRRPNRPRRGADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHGSGAKPGTDPKTCPTCNG 167 (371)
T ss_pred CHHHHHHHhhcCCCc--ccCCCCCcccCCceEEEEEeEhhhhccCceeeEecceeeECCcCCCCCCCCCCCCCcCCCCCC
Confidence 589999999975322 22334457899999999999999999999999999999999999999999985 479999999
Q ss_pred ccEEEEEEecCCccceeeeecCCCCCceeEEEcCcCCCCCCCCceEEEeeEEEEEEecCCCcCCCeEEecCCCCCCC-CC
Q 019828 88 SGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAP-DT 166 (335)
Q Consensus 88 ~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~~~e~k~l~V~Ip~G~~~g~~i~~~g~G~~~~-~~ 166 (335)
+|.+...+++ ++++++++|+.|+|+|++| +++|+.|+|++++.+.+.|+|+||+|+.+|++|+++|+|++.+ +.
T Consensus 168 ~G~v~~~~~~---g~~~~~~~C~~C~G~G~~i--~~pC~~C~G~G~v~~~~~i~V~IPaGv~~g~~ir~~g~G~~g~~Gg 242 (371)
T COG0484 168 SGQVRTVQRT---GFFSFQQTCPTCNGTGKII--KDPCGKCKGKGRVKKKKSISVNIPAGVDDGDRIRLSGEGEAGPNGG 242 (371)
T ss_pred cCeEEEEEee---eEEEEEEECCCCccceeEC--CCCCCCCCCCCeEeeeeEEEEECCCCCccCCEEEEecCcccCCCCC
Confidence 9999988888 4567789999999999999 4999999999999999999999999999999999999999976 77
Q ss_pred CcccEEEEEEeecCCCcccccccceeeccCCHHHHhCCcEEEEecCCCcEEEEEeCCCccccCCcEEEEcCCCCCCCCCC
Q 019828 167 VTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRP 246 (335)
Q Consensus 167 ~~GDliv~i~~~~h~~F~R~g~dL~~~~~I~l~eAl~G~~~~i~~ldGr~l~v~ip~g~vi~~g~~~~i~geGmP~~~~~ 246 (335)
++|||||+|.+++|+.|+|+|+|||++++|++.+|++|.+++|+||||+ +.|+|||| +++|++++|+|+|||..+ +
T Consensus 243 p~GDLyv~i~v~~h~~F~R~g~dL~~~~~Is~~~AalG~~i~vptl~g~-~~l~ip~G--tq~G~~~rl~gkG~p~~~-~ 318 (371)
T COG0484 243 PAGDLYVFVHVKPHPIFERDGDDLYCEVPISFTEAALGGEIEVPTLDGR-VKLKIPAG--TQTGEVFRLRGKGMPKLR-S 318 (371)
T ss_pred CCccEEEEEEeecCCCeEECCCceEeccccCHHHHhcCCEEEEEecCCC-EEEecCCC--CccCcEEEEcCCCccccC-C
Confidence 8899999999999999999999999999999999999999999999999 99999999 688999999999999863 5
Q ss_pred CCCCceEEEEEEeCCCCCCHHHHHHHHhhCCCC
Q 019828 247 FMRGKLYIHFTVDFPESLSPDQCKMLETVLPPR 279 (335)
Q Consensus 247 ~~~GdL~i~f~V~fP~~l~~~~~~~L~~~lp~~ 279 (335)
..+|||||+++|++|++|+.+|+++|+++....
T Consensus 319 ~~~GDl~v~v~v~~P~~ls~~q~~lL~~~~~~~ 351 (371)
T COG0484 319 GGRGDLYVRVKVETPKNLSDEQKELLEEFAKSL 351 (371)
T ss_pred CCcCCEEEEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 567999999999999999999999999998644
No 3
>PRK14296 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.6e-62 Score=477.74 Aligned_cols=259 Identities=27% Similarity=0.525 Sum_probs=236.7
Q ss_pred CchhhhhhhcCCCCCCCCCCCCCCCCCCCceEEEEEeehhhhhcCceeEEeeeeeEecCCCCCCCccCCCc-ccCCCCCC
Q 019828 9 DPFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGAS-MKCSGCQG 87 (335)
Q Consensus 9 ~~~diF~~fFgg~~~~~~~~~~~~~~~g~d~~~~l~vtLee~y~G~~~~i~~~r~~~C~~C~G~G~~~~~~-~~C~~C~G 87 (335)
++.|||++|||++ + ++.+++++++|+.+.|.|||||+|+|+++++.+.+.++|.+|+|+|.+.++. .+|+.|+|
T Consensus 100 ~f~d~f~~~fggg----~-~~~~~~~~g~di~~~l~ltlee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G 174 (372)
T PRK14296 100 SFTNIFSDFFGSN----K-SDYQRSTKGQSVSLDIYLTFKELLFGVDKIIELDLLTNCSKCFGSGAESNSDIHICNNCHG 174 (372)
T ss_pred cchhhhhhhcCCC----c-cCCCCcCCCCCeEEEeeccHHHhhCCeeEEEEEeeeeccCCCCCCccCCCCCCccCCCCCC
Confidence 4568899999742 1 1223456899999999999999999999999999999999999999987764 78999999
Q ss_pred ccEEEEEEecCCccceeeeecCCCCCceeEEEcCcCCCCCCCCceEEEeeEEEEEEecCCCcCCCeEEecCCCCCC-CCC
Q 019828 88 SGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEA-PDT 166 (335)
Q Consensus 88 ~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~~~e~k~l~V~Ip~G~~~g~~i~~~g~G~~~-~~~ 166 (335)
+|+++..+++|| |++|++++|+.|+|+|+++. +.|+.|+|++++.+.+.++|.||+|+++|++|+|+|+|++. ++.
T Consensus 175 ~G~~~~~~~~g~-~~~q~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~ 251 (372)
T PRK14296 175 TGEVLVQKNMGF-FQFQQSAKCNVCNGAGKIIK--NKCKNCKGKGKYLERKKIEVNIPKGIRPNQQIKLSQKGHASLNNG 251 (372)
T ss_pred CceEEEEEeccc-eEEEEEecCCCcCCcceeec--ccccCCCCceEEEEEEEEEEEECCCCCCCCEEEEeccccCCCCCC
Confidence 999999999999 66688999999999999986 88999999999999999999999999999999999999986 477
Q ss_pred CcccEEEEEEeecCCCcccc-cccceeeccCCHHHHhCCcEEEEecCCCcEEEEEeCCCccccCCcEEEEcCCCCCCCCC
Q 019828 167 VTGDIVFVLQQKEHPKFKRK-GDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQR 245 (335)
Q Consensus 167 ~~GDliv~i~~~~h~~F~R~-g~dL~~~~~I~l~eAl~G~~~~i~~ldGr~l~v~ip~g~vi~~g~~~~i~geGmP~~~~ 245 (335)
.+|||||+|++++|+.|+|+ |+|||++++|||+|||+|+++.|+||||+ +.|++|++ ++||++++|+|+|||...+
T Consensus 252 ~~GDL~v~v~v~~h~~F~R~~G~DL~~~~~Isl~eAllG~~~~i~tldG~-~~v~ip~~--t~~g~~~ri~GkGmP~~~~ 328 (372)
T PRK14296 252 VNGDLIIDIYLKESKVFEIINNNDILMTYNISYLDAILGNEIIIKTLDGD-IKYKLPKS--INSNELIIINNKGLYKSIN 328 (372)
T ss_pred CCccEEEEEEEeCCCCEEEeCCCcEEEEEecCHHHHhCCCEEEeeCCCCC-EEEEECCc--cCCCcEEEEcCCCCCcCCC
Confidence 89999999999999999996 89999999999999999999999999998 89999987 8999999999999997655
Q ss_pred CCCCCceEEEEEEeCCCCCCHHHHHHHHhhCCC
Q 019828 246 PFMRGKLYIHFTVDFPESLSPDQCKMLETVLPP 278 (335)
Q Consensus 246 ~~~~GdL~i~f~V~fP~~l~~~~~~~L~~~lp~ 278 (335)
++.+|||||+|+|+||++|+++|+++|++++..
T Consensus 329 ~~~~GDL~V~~~V~~P~~Ls~~q~~~l~~l~~~ 361 (372)
T PRK14296 329 KDKRGDLIIKVNIVVPKNLSKKEKELIEQIYEQ 361 (372)
T ss_pred CCCcCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 567899999999999999999999999999853
No 4
>PRK14278 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.2e-60 Score=465.33 Aligned_cols=262 Identities=25% Similarity=0.555 Sum_probs=236.9
Q ss_pred CchhhhhhhcCCCCCCCCCCCCCCCCCCCceEEEEEeehhhhhcCceeEEeeeeeEecCCCCCCCccCCCc-ccCCCCCC
Q 019828 9 DPFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGAS-MKCSGCQG 87 (335)
Q Consensus 9 ~~~diF~~fFgg~~~~~~~~~~~~~~~g~d~~~~l~vtLee~y~G~~~~i~~~r~~~C~~C~G~G~~~~~~-~~C~~C~G 87 (335)
++.|||++|||+++ ++.+...+++++.|+.+.|.|||||+|+|+++++.+++.++|.+|+|+|.+.++. .+|+.|+|
T Consensus 87 ~~~d~f~~ffgg~g--~~~~~~~~~~~g~d~~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G 164 (378)
T PRK14278 87 GLGDVFEAFFGGGA--ASRGPRGRVRPGSDSLLRMRLDLEECATGVTKQVTVDTAVLCDRCHGKGTAGDSKPVTCDTCGG 164 (378)
T ss_pred chhHHHHHHhCCCC--CCCCCccCCCCCCCeEEEEEEEHHHhcCCeEEEEEEEeeccCCCCcCccCCCCCCceecCCccC
Confidence 46799999998531 1111112346899999999999999999999999999999999999999987764 68999999
Q ss_pred ccEEEEEEecCCccceeeeecCCCCCceeEEEcCcCCCCCCCCceEEEeeEEEEEEecCCCcCCCeEEecCCCCCCCC-C
Q 019828 88 SGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAPD-T 166 (335)
Q Consensus 88 ~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~~~e~k~l~V~Ip~G~~~g~~i~~~g~G~~~~~-~ 166 (335)
+|++...+++++|++++ +++|+.|+|+|+++. ++|+.|+|++++.+.+.++|.||||+++|++|+|+|+|++.++ .
T Consensus 165 ~G~~~~~~~~~~g~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~ 241 (378)
T PRK14278 165 RGEVQTVQRSFLGQVMT-SRPCPTCRGVGEVIP--DPCHECAGDGRVRARREITVKIPAGVGDGMRIRLAAQGEVGPGGG 241 (378)
T ss_pred ceEEEEEEeccceeEEE-EEECCCCCccceeeC--CCCCCCCCceeEecceEEEEEECCCCCCCcEEEEccCcCCCCCCC
Confidence 99999988888988875 569999999999986 8899999999999999999999999999999999999999774 5
Q ss_pred CcccEEEEEEeecCCCcccccccceeeccCCHHHHhCCcEEEEecCCCcEEEEEeCCCccccCCcEEEEcCCCCCCCCCC
Q 019828 167 VTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRP 246 (335)
Q Consensus 167 ~~GDliv~i~~~~h~~F~R~g~dL~~~~~I~l~eAl~G~~~~i~~ldGr~l~v~ip~g~vi~~g~~~~i~geGmP~~~~~ 246 (335)
.+|||||+|++++|+.|+|+|+||+++++|+|.+||+|+++.|+|||++.|.|+||++ +++|++++|+|+|||..+ .
T Consensus 242 ~~GDL~v~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tld~~~i~v~ip~g--~~~g~~lrl~g~G~p~~~-~ 318 (378)
T PRK14278 242 PAGDLYVEVHEQPHDVFVRDGDDLHCTVSVPMVDAALGTTVTVEAILDGPSEITIPPG--TQPGSVITLRGRGMPHLR-S 318 (378)
T ss_pred CCCCEEEEEEECcCCCEEEcCCCEEEEEecCHHHHhcCCeEEEecCCCCeEEEEeCCC--cCCCcEEEECCCCCCCCC-C
Confidence 6899999999999999999999999999999999999999999999887899999998 899999999999999764 3
Q ss_pred CCCCceEEEEEEeCCCCCCHHHHHHHHhhCCC
Q 019828 247 FMRGKLYIHFTVDFPESLSPDQCKMLETVLPP 278 (335)
Q Consensus 247 ~~~GdL~i~f~V~fP~~l~~~~~~~L~~~lp~ 278 (335)
..+|||||+|+|.||++|+++|+++|+++++.
T Consensus 319 ~~~GDL~V~~~V~~P~~Ls~~qk~~l~~~~~~ 350 (378)
T PRK14278 319 GGRGDLHAHVEVVVPTRLDHEDIELLRELKAL 350 (378)
T ss_pred CCCCCEEEEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 46899999999999999999999999999964
No 5
>PRK14298 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=5.2e-60 Score=462.30 Aligned_cols=259 Identities=29% Similarity=0.569 Sum_probs=235.2
Q ss_pred CCchhhhhhhcCCCCCCCCCCCCCCCCCCCceEEEEEeehhhhhcCceeEEeeeeeEecCCCCCCCccCCCc-ccCCCCC
Q 019828 8 HDPFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGAS-MKCSGCQ 86 (335)
Q Consensus 8 ~~~~diF~~fFgg~~~~~~~~~~~~~~~g~d~~~~l~vtLee~y~G~~~~i~~~r~~~C~~C~G~G~~~~~~-~~C~~C~ 86 (335)
.++.|+|++|||+++ +.+..+++++.|+.+.|.|||||+|+|+++++.+.+.++|.+|+|+|.+.++. .+|+.|+
T Consensus 90 ~~~~d~f~~~Fgg~~----~~~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~ 165 (377)
T PRK14298 90 GGFGDIFEMFFGGGG----RRGRMGPRRGSDLRYDLYITLEEAAFGVRKDIDVPRAERCSTCSGTGAKPGTSPKRCPTCG 165 (377)
T ss_pred CcchhhhHhhhcCCC----ccCCCCCCCCCCEEEEEEEEHHHhhCCeEEEEEEEeeccCCCCCCCcccCCCCCCcCCCCC
Confidence 346799999997521 11123356899999999999999999999999999999999999999988765 7899999
Q ss_pred CccEEEEEEecCCccceeeeecCCCCCceeEEEcCcCCCCCCCCceEEEeeEEEEEEecCCCcCCCeEEecCCCCCC-CC
Q 019828 87 GSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEA-PD 165 (335)
Q Consensus 87 G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~~~e~k~l~V~Ip~G~~~g~~i~~~g~G~~~-~~ 165 (335)
|+|+++..+++++ +++|++++|+.|+|+|+++. ++|+.|+|++++.+.+.++|.||||+++|++|+|+|+|++. ++
T Consensus 166 G~G~~~~~~~~~~-g~~~~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~i~~~g~G~~~~~~ 242 (377)
T PRK14298 166 GTGQVTTTRSTPL-GQFVTTTTCSTCHGRGQVIE--SPCPVCSGTGKVRKTRKITVNVPAGADSGLRLKLSGEGEAGSPG 242 (377)
T ss_pred CccEEEEEEecCc-eeEEEEEeCCCCCCCCcccC--CCCCCCCCccEEEEEEEEEecCCCCCCCCCEEEEecccCCCCCC
Confidence 9999998888644 55688999999999999986 88999999999999999999999999999999999999985 57
Q ss_pred CCcccEEEEEEeecCCCcccccccceeeccCCHHHHhCCcEEEEecCCCcEEEEEeCCCccccCCcEEEEcCCCCCCCCC
Q 019828 166 TVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQR 245 (335)
Q Consensus 166 ~~~GDliv~i~~~~h~~F~R~g~dL~~~~~I~l~eAl~G~~~~i~~ldGr~l~v~ip~g~vi~~g~~~~i~geGmP~~~~ 245 (335)
..+|||||+|++++|+.|+|+|+||++++.|||.|||+|+++.|+||||+ +.|+||++ +++|++++|+|+|||..+
T Consensus 243 ~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~-i~v~ip~g--~~~g~~lri~g~G~p~~~- 318 (377)
T PRK14298 243 APSGDLYIVLHVKEHDYFERVGDDIISEIPISFTQAALGADIMVPTLYGK-VKMNIPPG--TQTHSVFRLKDKGMPRLH- 318 (377)
T ss_pred CCCcCEEEEEEEecCCCeEEEcCcEEEEEEeCHHHHhCCCeEEEecCCCC-EEEEeCCC--cccCCEEEECCCCCCCCC-
Confidence 78999999999999999999999999999999999999999999999998 78999998 799999999999999764
Q ss_pred CCCCCceEEEEEEeCCCCCCHHHHHHHHhhCC
Q 019828 246 PFMRGKLYIHFTVDFPESLSPDQCKMLETVLP 277 (335)
Q Consensus 246 ~~~~GdL~i~f~V~fP~~l~~~~~~~L~~~lp 277 (335)
...+|||||+|+|.||+.|+++++++|++++.
T Consensus 319 ~~~~GDL~V~~~V~~P~~ls~~~~~ll~~l~~ 350 (377)
T PRK14298 319 GHGKGDQLVKVIVKTPTKLTQEQKELLREFDE 350 (377)
T ss_pred CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999999999999985
No 6
>PRK14277 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=7.4e-60 Score=462.90 Aligned_cols=261 Identities=28% Similarity=0.561 Sum_probs=235.8
Q ss_pred CchhhhhhhcCCCCCCCCCC-CCCCCCCCCceEEEEEeehhhhhcCceeEEeeeeeEecCCCCCCCccCCCc-ccCCCCC
Q 019828 9 DPFDIFQSFFGGSPFGGGSS-RGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGAS-MKCSGCQ 86 (335)
Q Consensus 9 ~~~diF~~fFgg~~~~~~~~-~~~~~~~g~d~~~~l~vtLee~y~G~~~~i~~~r~~~C~~C~G~G~~~~~~-~~C~~C~ 86 (335)
++.|+|++||++. |++++. +..++++++|+.+.|.|||||+|+|+++++.++|.++|++|+|+|...+.. .+|+.|+
T Consensus 101 ~~~d~f~~~F~~~-fgg~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~C~~C~ 179 (386)
T PRK14277 101 GFGDIFEDIFGDF-FGTGRRRAETGPQKGADIRYDLELTFEEAAFGTEKEIEVERFEKCDVCKGSGAKPGSKPVTCPVCH 179 (386)
T ss_pred chhHHHHHhhccc-ccCCCcCCCCCCCCCCCEEEEEEEEHHHHhCCeEEEEEEEeeccCCCCCCCCcCCCCCCccCCCCC
Confidence 3558899999742 222111 122346899999999999999999999999999999999999999987654 7899999
Q ss_pred CccEEEEEEecCCccceeeeecCCCCCceeEEEcCcCCCCCCCCceEEEeeEEEEEEecCCCcCCCeEEecCCCCCCC-C
Q 019828 87 GSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAP-D 165 (335)
Q Consensus 87 G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~~~e~k~l~V~Ip~G~~~g~~i~~~g~G~~~~-~ 165 (335)
|+|+++..++++||++++. ++|+.|+|+|+++. ++|+.|+|++++.+.+.++|.||+|+++|++|+|+|+|++.+ +
T Consensus 180 G~G~~~~~~~~~~G~~~~~-~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~ 256 (386)
T PRK14277 180 GTGQVRTRQNTPFGRIVNI-RTCDRCHGEGKIIT--DPCNKCGGTGRIRRRRKIKVNIPAGIDDGQMITLRGEGEPGIKG 256 (386)
T ss_pred CEEEEEEEEeccCceEEEE-EECCCCCcceeecc--CCCCCCCCCcEEeeeeEEEEecCCCccCCcEEEEccccccCCCC
Confidence 9999999999999999876 69999999999986 889999999999999999999999999999999999999854 5
Q ss_pred CCcccEEEEEEeecCCCcccccccceeeccCCHHHHhCCcEEEEecCCCcEEEEEeCCCccccCCcEEEEcCCCCCCCCC
Q 019828 166 TVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQR 245 (335)
Q Consensus 166 ~~~GDliv~i~~~~h~~F~R~g~dL~~~~~I~l~eAl~G~~~~i~~ldGr~l~v~ip~g~vi~~g~~~~i~geGmP~~~~ 245 (335)
..+|||||+|++++|+.|+|+|+||+++++|||+|||+|+++.|+||||+ +.|+||++ +++|++++|+|+|||..+
T Consensus 257 ~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~-~~v~ip~g--~~~g~~~ri~g~G~p~~~- 332 (386)
T PRK14277 257 GPNGDLYIVIKVKPHPLFKREGYNVYLEMPITFTDAALGGEIEIPTLDGK-VKFTIPEG--TQTGTKFRLRGKGIPHLR- 332 (386)
T ss_pred CCCccEEEEEEEecCCCeEEecCCEEEEEEcCHHHHhCCCEEEEEcCCCC-EEEEECCC--CCCCCEEEECCCCCCCCC-
Confidence 67899999999999999999999999999999999999999999999998 89999998 799999999999999864
Q ss_pred CCCCCceEEEEEEeCCCCCCHHHHHHHHhhCC
Q 019828 246 PFMRGKLYIHFTVDFPESLSPDQCKMLETVLP 277 (335)
Q Consensus 246 ~~~~GdL~i~f~V~fP~~l~~~~~~~L~~~lp 277 (335)
...+|||||+|+|.||++|+++|+++|++++.
T Consensus 333 ~~~~GDL~v~~~V~~P~~Ls~~qk~~l~~l~~ 364 (386)
T PRK14277 333 GRGRGDQIVKVYIEVPKKLTEKQKELLREFEK 364 (386)
T ss_pred CCCCCCEEEEEEEEeCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999999999999984
No 7
>PRK14276 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=8.3e-60 Score=461.68 Aligned_cols=259 Identities=25% Similarity=0.499 Sum_probs=236.3
Q ss_pred CchhhhhhhcCCCCCCCCCCCCCCCCCCCceEEEEEeehhhhhcCceeEEeeeeeEecCCCCCCCccCCCc-ccCCCCCC
Q 019828 9 DPFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGAS-MKCSGCQG 87 (335)
Q Consensus 9 ~~~diF~~fFgg~~~~~~~~~~~~~~~g~d~~~~l~vtLee~y~G~~~~i~~~r~~~C~~C~G~G~~~~~~-~~C~~C~G 87 (335)
++.|||++|||+++ +.++..+++++.|+.+.|.|||||+|+|+++++.+.+.++|.+|+|+|...+.. .+|+.|+|
T Consensus 95 ~~~d~f~~~fgg~~---~~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G 171 (380)
T PRK14276 95 GFEDIFSSFFGGGG---ARRNPNAPRQGDDLQYRVNLDFEEAIFGKEKEVSYNREATCHTCNGSGAKPGTSPVTCGKCHG 171 (380)
T ss_pred chhhHHHHHhCccc---cccCcCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeccccCCCCcCcccCCCCCCccCCCCCC
Confidence 46799999997521 111123346899999999999999999999999999999999999999987664 68999999
Q ss_pred ccEEEEEEecCCccceeeeecCCCCCceeEEEcCcCCCCCCCCceEEEeeEEEEEEecCCCcCCCeEEecCCCCCCC-CC
Q 019828 88 SGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAP-DT 166 (335)
Q Consensus 88 ~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~~~e~k~l~V~Ip~G~~~g~~i~~~g~G~~~~-~~ 166 (335)
+|.+...++++|||+++ +++|+.|+|+|+++. ++|+.|+|++++.+.++++|.||+|+++|++|+|+|+|++.+ +.
T Consensus 172 ~G~~~~~~~~~~G~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~l~G~G~~~~~~~ 248 (380)
T PRK14276 172 SGVITVDTQTPLGMMRR-QVTCDVCHGTGKEIK--EPCQTCHGTGHEKQAHTVSVKIPAGVETGQQIRLQGQGEAGFNGG 248 (380)
T ss_pred eeEEEEEEecCCceEEE-EEECCCCCCCCcccc--CCCCCCCCceEEEEEEEEEEEeCCCccCCcEEEEeccccCCCCCC
Confidence 99999999999999986 779999999999986 889999999999999999999999999999999999999875 45
Q ss_pred CcccEEEEEEeecCCCcccccccceeeccCCHHHHhCCcEEEEecCCCcEEEEEeCCCccccCCcEEEEcCCCCCCCCCC
Q 019828 167 VTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRP 246 (335)
Q Consensus 167 ~~GDliv~i~~~~h~~F~R~g~dL~~~~~I~l~eAl~G~~~~i~~ldGr~l~v~ip~g~vi~~g~~~~i~geGmP~~~~~ 246 (335)
.+|||||+|++++|+.|+|+|+||+++++|||.|||+|+++.|+||||+ +.|+||++ +++|++++|+|+|||..+ .
T Consensus 249 ~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tldg~-i~v~ip~g--~~~g~~~~i~g~G~p~~~-~ 324 (380)
T PRK14276 249 PYGDLYVVFRVEPSKKFERDGSTIYYTLPISFVQAALGDTVEVPTVHGD-VELKIPAG--TQTGKKFRLRGKGAPKLR-G 324 (380)
T ss_pred CCcCEEEEEEEEECcceeeecceEEEEEecCHHHHhCCCeEEEEcCCCc-EEEEECCC--CCCCCEEEECCCCcCCCC-C
Confidence 6899999999999999999999999999999999999999999999998 79999998 799999999999999864 3
Q ss_pred CCCCceEEEEEEeCCCCCCHHHHHHHHhhCC
Q 019828 247 FMRGKLYIHFTVDFPESLSPDQCKMLETVLP 277 (335)
Q Consensus 247 ~~~GdL~i~f~V~fP~~l~~~~~~~L~~~lp 277 (335)
..+|||||+|+|.||+.|+++|+++|++++.
T Consensus 325 ~~~GDL~V~~~v~~P~~l~~~q~~~l~~~~~ 355 (380)
T PRK14276 325 GGNGDQHVTVNIVTPTKLNDAQKEALKAFAK 355 (380)
T ss_pred CCCCCEEEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999999999985
No 8
>PRK14288 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=7.6e-60 Score=460.18 Aligned_cols=237 Identities=25% Similarity=0.529 Sum_probs=220.4
Q ss_pred CCCCCCceEEEEEeehhhhhcCceeEEeeeeeEecCCCCCCCccCCCcccCCCCCCccEEEEEEecCCccceeeeecCCC
Q 019828 32 RQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNE 111 (335)
Q Consensus 32 ~~~~g~d~~~~l~vtLee~y~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~ 111 (335)
++++++|+.+.|.|||||+|+|+++++.+.|.++|..|+|+|.......+|+.|+|+|++...+ |++ |++++|+.
T Consensus 109 ~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~----g~~-~~~~~C~~ 183 (369)
T PRK14288 109 KSSIAPDYLQTIELSFKEAVFGCKKTIKVQYQSVCESCDGTGAKDKALETCKQCNGQGQVFMRQ----GFM-SFAQTCGA 183 (369)
T ss_pred CCCCCCCeeEeccccHHHHhCCeEEEEEEEeeccCCCCCCcccCCCCCcCCCCCCCCcEEEEEe----ceE-EEEEecCC
Confidence 3467999999999999999999999999999999999999999877668999999999876543 455 45679999
Q ss_pred CCceeEEEcCcCCCCCCCCceEEEeeEEEEEEecCCCcCCCeEEecCCCCCCCCCCcccEEEEEEeecCCCcccccccce
Q 019828 112 CKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLF 191 (335)
Q Consensus 112 C~G~G~~i~~~~~C~~C~G~g~~~e~k~l~V~Ip~G~~~g~~i~~~g~G~~~~~~~~GDliv~i~~~~h~~F~R~g~dL~ 191 (335)
|+|+|+++. +.|+.|+|++++.+.++++|.||||+++|++|+|+|+|++.++..+|||||+|++++|+.|+|+|+|||
T Consensus 184 C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~IP~G~~~G~~i~l~g~G~~~~~~~~GDL~v~i~v~~h~~f~R~G~DL~ 261 (369)
T PRK14288 184 CQGKGKIIK--TPCQACKGKTYILKDEEIDAIIPEGIDDQNRMVLKNKGNEYEKGKRGDLYLEARVKEDEHFKREGCDLF 261 (369)
T ss_pred CCCCceEcc--ccCccCCCcceEEEEEEEEEecCCCCCCCCEEEEccCccCCCCCCCCCEEEEEEEEECCCcEEeCCEEE
Confidence 999999986 889999999999999999999999999999999999999988888999999999999999999999999
Q ss_pred eeccCCHHHHhCCcEEEEecCCCcEEEEEeCCCccccCCcEEEEcCCCCCCCCCCCCCCceEEEEEEeCCCCCCHHHHHH
Q 019828 192 VEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKM 271 (335)
Q Consensus 192 ~~~~I~l~eAl~G~~~~i~~ldGr~l~v~ip~g~vi~~g~~~~i~geGmP~~~~~~~~GdL~i~f~V~fP~~l~~~~~~~ 271 (335)
++++|||+|||+|+++.|+||||+.|.|++|++ ++||++++|+|+|||..+ ...+|||||+|+|+||++|+++|+++
T Consensus 262 ~~~~Isl~eAllG~~i~v~tLdG~~l~i~i~~~--~~~g~~~~i~g~G~p~~~-~~~~GDL~v~~~v~~P~~ls~~q~~~ 338 (369)
T PRK14288 262 IEAPVFFTTIALGHTIKVPSLKGDELELKIPRN--ARDRQTFAFRNEGVKHPE-SSYRGSLIVELQVIYPKSLNKEQQEL 338 (369)
T ss_pred EEEecCHHHHhcCCEEEeecCCCCEEEEEeCCC--CCCCcEEEEcCCCCCCCC-CCCCCCEEEEEEEECCCCCCHHHHHH
Confidence 999999999999999999999999899999987 899999999999999764 34689999999999999999999999
Q ss_pred HHhhCCC
Q 019828 272 LETVLPP 278 (335)
Q Consensus 272 L~~~lp~ 278 (335)
|+++++.
T Consensus 339 l~~~~~~ 345 (369)
T PRK14288 339 LEKLHAS 345 (369)
T ss_pred HHHHHhh
Confidence 9999974
No 9
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.1e-61 Score=452.28 Aligned_cols=255 Identities=57% Similarity=1.028 Sum_probs=242.9
Q ss_pred hhhhcCCCCCCCCCCCCCCCCCCCceEEEEEeehhhhhcCceeEEeeeeeEecCCCCCCCccCCCcccCCCCCCccEEEE
Q 019828 14 FQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGASMKCSGCQGSGMKVS 93 (335)
Q Consensus 14 F~~fFgg~~~~~~~~~~~~~~~g~d~~~~l~vtLee~y~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~ 93 (335)
|++||+.+ +. +.+++.|++|++|.|+|||||+|+|+++++.++++.+|++|+|+|.++++..+|+.|.|+|+.+.
T Consensus 83 f~~~F~~g---~~--~~~~~~rg~~~~~~~~~~Le~~y~G~s~kl~l~~~~iCs~C~GsGgksg~~~~C~~C~GsGv~~~ 157 (337)
T KOG0712|consen 83 FSQFFGFG---GN--GGRGRQRGKDVVHQLKVTLEELYMGKSKKLFLSRNFICSKCSGSGGKSGSAPKCTTCRGSGVQTR 157 (337)
T ss_pred HHHhccCC---Cc--CccccccCCCceEEEEEEHHHhhcCCccceecccCccCCcCCCCCCCCCCCCCCCCCCCCCceeE
Confidence 99999832 11 12334459999999999999999999999999999999999999999998889999999999999
Q ss_pred EEecCCccceeeeecCCCCCceeEEEcCcCCCCCCCCceEEEeeEEEEEEecCCCcCCCeEEecCCCCCCCCCCcccEEE
Q 019828 94 IRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVF 173 (335)
Q Consensus 94 ~~~~gpg~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~~~e~k~l~V~Ip~G~~~g~~i~~~g~G~~~~~~~~GDliv 173 (335)
++++||||+|+++..|..|+|+|..+..+++|+.|.|++++.+.+.++|+|++|++++++|+|.|++++.++..|||+++
T Consensus 158 ~~~~gPg~~qs~q~~C~~C~G~G~~~~~kd~C~~C~G~~~v~~kkil~v~V~~g~~~~~ki~f~geadea~g~~pgD~vl 237 (337)
T KOG0712|consen 158 TRQMGPGMVQSPQLVCDSCNGSGETISLKDRCKTCSGAKVVREKKILEVHVEPGMPHGQKITFKGEADEAPGTKPGDVVL 237 (337)
T ss_pred EEeccccccccceeEeccCCCccccccccccCcccccchhhhhhheeeccccCCCcccceeeeeeeeeecCCCcCccEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCCCcccccccceeeccCCHHHHhCCcEEEEecCCCcEEEEEeCCCccccCCcEEEEcCCCCCCCCCCCCCCceE
Q 019828 174 VLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLY 253 (335)
Q Consensus 174 ~i~~~~h~~F~R~g~dL~~~~~I~l~eAl~G~~~~i~~ldGr~l~v~ip~g~vi~~g~~~~i~geGmP~~~~~~~~GdL~ 253 (335)
+|.+++|+.|.|+++||+++.+|+|.|||||+.+.+.|||||.|.|+++||+||+|+++++|+|+|||+++++ +||||
T Consensus 238 ~i~~k~h~~F~Rrg~dL~~~~~i~l~eal~G~~~~~~~ldGr~l~~~~~pg~vi~~~~~~~v~~~gmp~~~~~--~g~ly 315 (337)
T KOG0712|consen 238 LIDQKEHPGFDRRGSDLYRKLTISLVEALCGFQRVWETLDGRLLKLSSKPGEVISPGDTKRVEGEGMPIFRNP--KGDLY 315 (337)
T ss_pred EecccccccceecccccceeeecchhhccccceEEEEccCCceEEEecCCCceeChhHEEeecCCCcccccCC--CCcEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999876 99999
Q ss_pred EEEEEeCCCCCCHHHHHHHHhhC
Q 019828 254 IHFTVDFPESLSPDQCKMLETVL 276 (335)
Q Consensus 254 i~f~V~fP~~l~~~~~~~L~~~l 276 (335)
|+|+|+||+ ++++++.+|+++|
T Consensus 316 i~~~v~fp~-~~~~~~~~l~~~l 337 (337)
T KOG0712|consen 316 IKFEVKFPK-LSPSQLKMLEDLL 337 (337)
T ss_pred EEEEEEcCC-CChHHHHHHHhhC
Confidence 999999999 9999999999876
No 10
>PRK14287 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.7e-59 Score=457.98 Aligned_cols=261 Identities=25% Similarity=0.518 Sum_probs=236.7
Q ss_pred CCchhhhhhhcCCCCCCCCCCCCCCCCCCCceEEEEEeehhhhhcCceeEEeeeeeEecCCCCCCCccCCCc-ccCCCCC
Q 019828 8 HDPFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGAS-MKCSGCQ 86 (335)
Q Consensus 8 ~~~~diF~~fFgg~~~~~~~~~~~~~~~g~d~~~~l~vtLee~y~G~~~~i~~~r~~~C~~C~G~G~~~~~~-~~C~~C~ 86 (335)
.+++|||++|||+++ +.+..++++++.|+.+.|.|||+|+|+|+++++.+.+.++|..|+|+|...+.. .+|+.|+
T Consensus 86 ~~~~d~f~~~fgg~~---~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~ 162 (371)
T PRK14287 86 GGFSDIFDMFFGGGG---GRRNPNAPRQGADLQYTMTLEFKEAVFGKETEIEIPREETCGTCHGSGAKPGTKPETCSHCG 162 (371)
T ss_pred cchHHHHHhhhcccc---CCCCCCCCCCCCCEEEEEEEEHHHhcCCeEEEEEEeeeccCCCCCCcccCCCCCCcccCCCC
Confidence 346799999998531 111112346899999999999999999999999999999999999999987654 6899999
Q ss_pred CccEEEEEEecCCccceeeeecCCCCCceeEEEcCcCCCCCCCCceEEEeeEEEEEEecCCCcCCCeEEecCCCCCCC-C
Q 019828 87 GSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAP-D 165 (335)
Q Consensus 87 G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~~~e~k~l~V~Ip~G~~~g~~i~~~g~G~~~~-~ 165 (335)
|+|++...++++|||+++ +.+|+.|.|+|+++. +.|+.|+|++++.+.+.++|.||+|+++|++|+|+|+|++.+ +
T Consensus 163 G~G~~~~~~~~~~G~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~G~G~~~~~~ 239 (371)
T PRK14287 163 GSGQLNVEQNTPFGRVVN-RRVCHHCEGTGKIIK--QKCATCGGKGKVRKRKKINVKVPAGIDHGQQLRVSGQGEAGVNG 239 (371)
T ss_pred CEEEEEEEEecCCceEEE-EEeCCCCCCCCcccc--ccCCCCCCeeEEeeeEEEEEEECCcCCCCCEEEEccCCcCCCCC
Confidence 999999999999999986 779999999999986 889999999999999999999999999999999999999865 5
Q ss_pred CCcccEEEEEEeecCCCcccccccceeeccCCHHHHhCCcEEEEecCCCcEEEEEeCCCccccCCcEEEEcCCCCCCCCC
Q 019828 166 TVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQR 245 (335)
Q Consensus 166 ~~~GDliv~i~~~~h~~F~R~g~dL~~~~~I~l~eAl~G~~~~i~~ldGr~l~v~ip~g~vi~~g~~~~i~geGmP~~~~ 245 (335)
..+|||||+|++++|+.|+|+|+||++++.|||.|||+|+++.|+||||+ +.|+||+| +++|++++|+|+|||..+
T Consensus 240 ~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~-i~v~ip~g--~~~g~~~ri~g~G~p~~~- 315 (371)
T PRK14287 240 GPPGDLYVVFNVKPHEFFERDGDDIYCEMPLTFPQVALGDEIEVPTLNGK-VKLKIPAG--TQTGTSFRLRGKGVPNVH- 315 (371)
T ss_pred CCCccEEEEEEEecCCCEEEecCCeEEEEeccHHHHhCCCEEEEEcCCCC-EEEEECCC--ccCCcEEEEcCCCccCCC-
Confidence 67899999999999999999999999999999999999999999999998 89999998 799999999999999764
Q ss_pred CCCCCceEEEEEEeCCCCCCHHHHHHHHhhCCC
Q 019828 246 PFMRGKLYIHFTVDFPESLSPDQCKMLETVLPP 278 (335)
Q Consensus 246 ~~~~GdL~i~f~V~fP~~l~~~~~~~L~~~lp~ 278 (335)
...+|||||+|+|.||+.|+++|+++|++++..
T Consensus 316 ~~~~GDL~V~~~v~~P~~l~~~q~~ll~~l~~~ 348 (371)
T PRK14287 316 GRGQGDQHVQVRVVTPKNLTEKEKELMREFAGM 348 (371)
T ss_pred CCCCCCEEEEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 346899999999999999999999999999853
No 11
>PRK14280 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.6e-59 Score=459.01 Aligned_cols=259 Identities=28% Similarity=0.571 Sum_probs=235.6
Q ss_pred CchhhhhhhcCCCCCCCCCCCCCCCCCCCceEEEEEeehhhhhcCceeEEeeeeeEecCCCCCCCccCCCc-ccCCCCCC
Q 019828 9 DPFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGAS-MKCSGCQG 87 (335)
Q Consensus 9 ~~~diF~~fFgg~~~~~~~~~~~~~~~g~d~~~~l~vtLee~y~G~~~~i~~~r~~~C~~C~G~G~~~~~~-~~C~~C~G 87 (335)
++.|||++|||+++ +++..++++++.|+.+.|.|||||+|+|+++++.+.|.++|+.|+|+|...+.. .+|+.|+|
T Consensus 92 ~~~d~f~~~fgg~~---~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G 168 (376)
T PRK14280 92 GFEDIFSSFFGGGG---RRRDPNAPRQGADLQYTMTLTFEEAVFGKEKEIEIPKEETCDTCHGSGAKPGTSKETCSHCGG 168 (376)
T ss_pred cchhhHHHHhCCcc---ccCcccccccccCEEEEEEEEHHHHhCCceeEEEEeeeccCCCCCCcccCCCCCCccCCCCCC
Confidence 56799999997521 111123346899999999999999999999999999999999999999987664 68999999
Q ss_pred ccEEEEEEecCCccceeeeecCCCCCceeEEEcCcCCCCCCCCceEEEeeEEEEEEecCCCcCCCeEEecCCCCCCC-CC
Q 019828 88 SGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAP-DT 166 (335)
Q Consensus 88 ~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~~~e~k~l~V~Ip~G~~~g~~i~~~g~G~~~~-~~ 166 (335)
+|++...+++++|+++ .+++|+.|+|+|+++. ++|+.|+|++++.+.+.++|.||+|+++|++|+|+|+|++.+ +.
T Consensus 169 ~G~~~~~~~~~~g~~~-~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~i~V~Ip~G~~~G~~i~l~G~G~~~~~~~ 245 (376)
T PRK14280 169 SGQVSVEQNTPFGRVV-NRQTCPHCNGTGQEIK--EKCPTCHGKGKVRKRKKINVKIPAGVDNGQQIRVSGEGEPGVNGG 245 (376)
T ss_pred EEEEEEEeecCCceEE-EEEEcCCCCCCCceec--CCCCCCCCceEEEEEEEEEEEeCCCCcCCcEEEEcccccCCCCCC
Confidence 9999999999999987 4779999999999985 889999999999999999999999999999999999999865 46
Q ss_pred CcccEEEEEEeecCCCcccccccceeeccCCHHHHhCCcEEEEecCCCcEEEEEeCCCccccCCcEEEEcCCCCCCCCCC
Q 019828 167 VTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRP 246 (335)
Q Consensus 167 ~~GDliv~i~~~~h~~F~R~g~dL~~~~~I~l~eAl~G~~~~i~~ldGr~l~v~ip~g~vi~~g~~~~i~geGmP~~~~~ 246 (335)
.+|||||+|++++|+.|+|+|+||++++.|||+|||+|+++.|+||||+ +.|+||++ +++|++++|+|+|||... .
T Consensus 246 ~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~-i~v~ip~g--~~~g~~~~i~g~G~p~~~-~ 321 (376)
T PRK14280 246 PAGDLYVVFRVRPHEFFERDGDDIYCEMPLTFAQAALGDEIEVPTLHGK-VKLKIPAG--TQTGTQFRLKGKGVPNVR-G 321 (376)
T ss_pred CCcCEEEEEEEecCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCce-EEEEECCC--CCCCcEEEEcCCCCCCCC-C
Confidence 7899999999999999999999999999999999999999999999997 89999998 899999999999999763 3
Q ss_pred CCCCceEEEEEEeCCCCCCHHHHHHHHhhCC
Q 019828 247 FMRGKLYIHFTVDFPESLSPDQCKMLETVLP 277 (335)
Q Consensus 247 ~~~GdL~i~f~V~fP~~l~~~~~~~L~~~lp 277 (335)
..+|||||+|+|.||++|+++|+++|++++.
T Consensus 322 ~~~GDL~v~~~v~~P~~Ls~~q~~~l~~l~~ 352 (376)
T PRK14280 322 YGQGDQYVVVRVVTPTKLTDRQKELLREFAE 352 (376)
T ss_pred CCCCCEEEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999999999984
No 12
>PRK14286 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2e-59 Score=457.67 Aligned_cols=260 Identities=28% Similarity=0.609 Sum_probs=231.6
Q ss_pred CchhhhhhhcCCCCCCC-CCCCCCCCCCCCceEEEEEeehhhhhcCceeEEeeeeeEecCCCCCCCccCCCc-ccCCCCC
Q 019828 9 DPFDIFQSFFGGSPFGG-GSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGAS-MKCSGCQ 86 (335)
Q Consensus 9 ~~~diF~~fFgg~~~~~-~~~~~~~~~~g~d~~~~l~vtLee~y~G~~~~i~~~r~~~C~~C~G~G~~~~~~-~~C~~C~ 86 (335)
++.|||++|||+++.++ ++++..++++++|+.+.|.|||||+|+|+++++.+.+.++|.+|+|+|...+.. .+|+.|+
T Consensus 95 ~~~d~f~~ffgg~~~~~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~ 174 (372)
T PRK14286 95 DFGDIFGDFFGGGRGGGSGGGRRSGPQRGSDLRYNLEVSLEDAALGREYKIEIPRLESCVDCNGSGASKGSSPTTCPDCG 174 (372)
T ss_pred chhhHHHHhhCCCccCCCcccccCCCCCCCCeeEEEEEEHHHHhCCeeEEEEeeccccCCCCcCCCcCCCCCCccCCCCc
Confidence 46699999998532110 011123346899999999999999999999999999999999999999987764 6899999
Q ss_pred CccEEEEEEecCCccceeeeecCCCCCceeEEEcCcCCCCCCCCceEEEeeEEEEEEecCCCcCCCeEEecCCCCCCC-C
Q 019828 87 GSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAP-D 165 (335)
Q Consensus 87 G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~~~e~k~l~V~Ip~G~~~g~~i~~~g~G~~~~-~ 165 (335)
|+|+++..+ |+++ ++++|+.|+|+|+++. ++|+.|+|++++.+.+.++|+||+|+++|++|+|+|+|++.+ +
T Consensus 175 G~G~v~~~~----G~~~-~~~~C~~C~G~G~~~~--~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~ 247 (372)
T PRK14286 175 GSGQIRRTQ----GFFS-VATTCPTCRGKGTVIS--NPCKTCGGQGLQEKRRTINIKIPPGVETGSRLKVSGEGEAGPNG 247 (372)
T ss_pred CeEEEEEEe----ceEE-EEEeCCCCCceeeEec--ccCCCCCCCcEEecceEEEEEECCCCCCCCEEEECCccccCCCC
Confidence 999876543 5664 7789999999999986 889999999999999999999999999999999999999876 4
Q ss_pred CCcccEEEEEEeecCCCcccccccceeeccCCHHHHhCCcEEEEecCCCcEEEEEeCCCccccCCcEEEEcCCCCCCCCC
Q 019828 166 TVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQR 245 (335)
Q Consensus 166 ~~~GDliv~i~~~~h~~F~R~g~dL~~~~~I~l~eAl~G~~~~i~~ldGr~l~v~ip~g~vi~~g~~~~i~geGmP~~~~ 245 (335)
..+|||||+|++++|+.|+|+|+||++++.|+|.|||+|+++.|+||||+.|.|++|++ +++|++++|+|+|||..+
T Consensus 248 ~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~i~v~ip~g--~~~g~~~ri~G~G~P~~~- 324 (372)
T PRK14286 248 GPHGDLYVVTHIKKHELFERQGNDLILVRKISLAQAILGAEIEVPTIDGKKAKMKIPEG--TESGQVFRLKGHGMPYLG- 324 (372)
T ss_pred CCCceEEEEEEEccCCCEEEecCCEEEEEEECHHHHhCCCEEEEeCCCCCEEEEEeCCc--cCCCcEEEECCCCCCCCC-
Confidence 56799999999999999999999999999999999999999999999999999999988 899999999999999764
Q ss_pred CCCCCceEEEEEEeCCCCCCHHHHHHHHhhCCC
Q 019828 246 PFMRGKLYIHFTVDFPESLSPDQCKMLETVLPP 278 (335)
Q Consensus 246 ~~~~GdL~i~f~V~fP~~l~~~~~~~L~~~lp~ 278 (335)
...+|||||+|+|.||++|+++|+++|++++..
T Consensus 325 ~~~~GDL~V~~~V~~P~~Ls~~qk~~l~~l~~~ 357 (372)
T PRK14286 325 AYGKGDQHVIVKIEIPKKITRRQRELIEEFARE 357 (372)
T ss_pred CCCCCcEEEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 346899999999999999999999999999964
No 13
>PRK14297 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=5.6e-59 Score=455.99 Aligned_cols=263 Identities=29% Similarity=0.597 Sum_probs=237.0
Q ss_pred CchhhhhhhcCCCCCCCCCCCCCCCCCCCceEEEEEeehhhhhcCceeEEeeeeeEecCCCCCCCccCCCc-ccCCCCCC
Q 019828 9 DPFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGAS-MKCSGCQG 87 (335)
Q Consensus 9 ~~~diF~~fFgg~~~~~~~~~~~~~~~g~d~~~~l~vtLee~y~G~~~~i~~~r~~~C~~C~G~G~~~~~~-~~C~~C~G 87 (335)
++.|||++|||++ +++.+++..++++++|+++.|.|||||+|+|+++++.+.+.+.|.+|+|+|...+.. .+|+.|+|
T Consensus 95 ~~~d~f~~~fgg~-~g~~~~~~~~~~kg~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G 173 (380)
T PRK14297 95 GFGDIFDSFFGGG-FGSSSRRRNGPQRGADIEYTINLTFEEAVFGVEKEISVTRNENCETCNGTGAKPGTSPKTCDKCGG 173 (380)
T ss_pred chhHHHHHHhccC-ccccccccCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeeeccCCCcccccccCCCcCccCCCccC
Confidence 3569999999852 211111223346899999999999999999999999999999999999999987664 68999999
Q ss_pred ccEEEEEEecCCccceeeeecCCCCCceeEEEcCcCCCCCCCCceEEEeeEEEEEEecCCCcCCCeEEecCCCCCCC-CC
Q 019828 88 SGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAP-DT 166 (335)
Q Consensus 88 ~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~~~e~k~l~V~Ip~G~~~g~~i~~~g~G~~~~-~~ 166 (335)
+|++...++++||+++ .+++|+.|+|+|.++. +.|+.|+|++++.+.++++|+||||+++|++|+|+|+|++.+ +.
T Consensus 174 ~G~~~~~~~~~~G~~~-~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~i~V~Ip~G~~~G~~I~l~g~G~~~~~~~ 250 (380)
T PRK14297 174 TGQIRVQRNTPLGSFV-STTTCDKCGGSGKVIE--DPCNKCHGKGKVRKNRKIKVNVPAGVDTGNVIPLRGQGEHGKNGG 250 (380)
T ss_pred eEEEEEEEEcCCceeE-EEEeCCCCCCCceEcC--CCCCCCCCCeEEEeEeEEEEEeCCCCCCCcEEEEecCccCCCCCC
Confidence 9999999999999776 4789999999999985 889999999999999999999999999999999999999865 56
Q ss_pred CcccEEEEEEeecCCCcccccccceeeccCCHHHHhCCcEEEEecCCCcEEEEEeCCCccccCCcEEEEcCCCCCCCCCC
Q 019828 167 VTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRP 246 (335)
Q Consensus 167 ~~GDliv~i~~~~h~~F~R~g~dL~~~~~I~l~eAl~G~~~~i~~ldGr~l~v~ip~g~vi~~g~~~~i~geGmP~~~~~ 246 (335)
.+|||||+|++++|+.|+|+|+||++++.|||+|||+|+++.|+||||+ +.|+||++ +++|++++|+|+|||..+ .
T Consensus 251 ~~GDL~v~v~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~-~~v~ip~g--~~~g~~~ri~g~G~p~~~-~ 326 (380)
T PRK14297 251 PTGDLYINIRVAPHKTFKRKGFDIYIDKHISFAKAALGTEIKVPTVDGE-VKYEVPAG--TQPGTVFRLKGKGVPRVN-S 326 (380)
T ss_pred CCccEEEEEEEcCCCCEEEeCCCEEEEEEeCHHHHhCCCcEEEEcCCCc-EEEEECCC--cCCCCEEEEcCCCcCCCC-C
Confidence 7899999999999999999999999999999999999999999999997 89999998 899999999999999763 4
Q ss_pred CCCCceEEEEEEeCCCCCCHHHHHHHHhhCCCC
Q 019828 247 FMRGKLYIHFTVDFPESLSPDQCKMLETVLPPR 279 (335)
Q Consensus 247 ~~~GdL~i~f~V~fP~~l~~~~~~~L~~~lp~~ 279 (335)
..+|||||+|+|.||++|+++|+++|+++|+..
T Consensus 327 ~~~GDL~v~~~v~~P~~ls~~q~~~l~~~~~~~ 359 (380)
T PRK14297 327 TGRGNQYVTVIVDIPKKLNSKQKEALTMFMEAS 359 (380)
T ss_pred CCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 568999999999999999999999999999643
No 14
>PRK14281 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.1e-58 Score=456.03 Aligned_cols=237 Identities=29% Similarity=0.583 Sum_probs=224.2
Q ss_pred CCCCceEEEEEeehhhhhcCceeEEeeeeeEecCCCCCCCccCCCcccCCCCCCccEEEEEEecCCccceeeeecCCCCC
Q 019828 34 RRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECK 113 (335)
Q Consensus 34 ~~g~d~~~~l~vtLee~y~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~ 113 (335)
+++.|+.+.|.|||||+|+|+++++.+++.+.|.+|+|+|...+...+|+.|+|+|++...+++++|++++ +++|+.|+
T Consensus 134 ~~g~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~-~~~C~~C~ 212 (397)
T PRK14281 134 IPGTDLKIRLKLTLEEIAKGVEKTLKIKKQVPCKECNGTGSKTGATETCPTCHGSGEVRQASKTMFGQFVN-ITACPTCG 212 (397)
T ss_pred CCCCCEEEEEEeEHHHHhCCeEEEEEEEeeecCCCCCCcccCCCCCccCCCCCCCcEEEEEEecccceEEE-EEecCCCc
Confidence 47899999999999999999999999999999999999999877667999999999999999999998876 67999999
Q ss_pred ceeEEEcCcCCCCCCCCceEEEeeEEEEEEecCCCcCCCeEEecCCCCCCC-CCCcccEEEEEEeecCCCccccccccee
Q 019828 114 GTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFV 192 (335)
Q Consensus 114 G~G~~i~~~~~C~~C~G~g~~~e~k~l~V~Ip~G~~~g~~i~~~g~G~~~~-~~~~GDliv~i~~~~h~~F~R~g~dL~~ 192 (335)
|+|+++. ++|+.|+|++++.+.++++|+||||+++|++|+|+|+|++.+ +..+|||||+|++++|+.|+|+|+||++
T Consensus 213 G~G~~~~--~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~~~~h~~F~R~G~DL~~ 290 (397)
T PRK14281 213 GEGRVVK--DRCPACYGEGIKQGEVTVKVTVPAGVQDGNYLTLRGQGNAGPRGGAPGDLIVVIEEKPHELFVRNGDDVIY 290 (397)
T ss_pred ceeeeeC--CCCCCCCCCccEecceEEEEecCCCCCCCCEEEEecccccCCCCCCCCcEEEEEEEcCCCCeEEecCCEEE
Confidence 9999986 889999999999999999999999999999999999999876 5689999999999999999999999999
Q ss_pred eccCCHHHHhCCcEEEEecCCCcEEEEEeCCCccccCCcEEEEcCCCCCCCCCCCCCCceEEEEEEeCCCCCCHHHHHHH
Q 019828 193 EHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKML 272 (335)
Q Consensus 193 ~~~I~l~eAl~G~~~~i~~ldGr~l~v~ip~g~vi~~g~~~~i~geGmP~~~~~~~~GdL~i~f~V~fP~~l~~~~~~~L 272 (335)
+++|||.|||+|+++.|+||||+ +.|+||++ +++|++++|+|+|||..+ ...+|||||+|+|.||++|+++|+++|
T Consensus 291 ~~~Isl~eAl~G~~~~i~tldg~-i~v~ip~g--~~~G~~~ri~g~G~P~~~-~~~~GDL~V~~~V~~P~~Ls~~qk~~l 366 (397)
T PRK14281 291 NLAVSYPDLVLGTKVEVPTLDGA-VKLTIPAG--TQPETMLRIPGKGIGHLR-GSGRGDQYVRVNVFVPKEVSHQDKELL 366 (397)
T ss_pred EEEecHHHHhcCCeEEeecCCcc-EEEEeCCc--cCCCcEEEEcCCCCCCCC-CCCCCCEEEEEEEEcCCCCCHHHHHHH
Confidence 99999999999999999999997 88999998 899999999999999764 346899999999999999999999999
Q ss_pred HhhCC
Q 019828 273 ETVLP 277 (335)
Q Consensus 273 ~~~lp 277 (335)
++++.
T Consensus 367 ~~l~~ 371 (397)
T PRK14281 367 KELKK 371 (397)
T ss_pred HHHHh
Confidence 99995
No 15
>PRK14285 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.1e-58 Score=451.33 Aligned_cols=259 Identities=31% Similarity=0.631 Sum_probs=233.0
Q ss_pred CchhhhhhhcCCCCCCCCCCCCCCCCCCCceEEEEEeehhhhhcCceeEEeeeeeEecCCCCCCCccCCCc-ccCCCCCC
Q 019828 9 DPFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGAS-MKCSGCQG 87 (335)
Q Consensus 9 ~~~diF~~fFgg~~~~~~~~~~~~~~~g~d~~~~l~vtLee~y~G~~~~i~~~r~~~C~~C~G~G~~~~~~-~~C~~C~G 87 (335)
++.|||++|||+++ ++.+.++++++.|+.+.|.|||||+|+|+++++.++|.++|.+|+|+|...++. ..|+.|+|
T Consensus 95 ~~~d~f~~~fgg~~---~~~~~~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G 171 (365)
T PRK14285 95 DFGDIFDSFFTGNR---GQDKNRKHEKGQDLTYQIEISLEDAYLGYKNNINITRNMLCESCLGKKSEKGTSPSICNMCNG 171 (365)
T ss_pred cHHHHHHHhhcCCc---CCCCCcCCCCCCCEEEEEEEEHHHhhCCeEEEEEeeecccCCCCCCcccCCCCCCccCCCccC
Confidence 36689999997521 111222346899999999999999999999999999999999999999987764 68999999
Q ss_pred ccEEEEEEecCCccceeeeecCCCCCceeEEEcCcCCCCCCCCceEEEeeEEEEEEecCCCcCCCeEEecCCCCCCCC-C
Q 019828 88 SGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAPD-T 166 (335)
Q Consensus 88 ~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~~~e~k~l~V~Ip~G~~~g~~i~~~g~G~~~~~-~ 166 (335)
+|+++. ++||+ |++++|+.|+|+|+++. ++|+.|+|++++.+.+.++|+||||+++|++|+|+|+|++.++ .
T Consensus 172 ~G~~~~----~~G~~-~~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~ 244 (365)
T PRK14285 172 SGRVMQ----GGGFF-RVTTTCPKCYGNGKIIS--NPCKSCKGKGSLKKKETIELKIPAGIDDNQQIKMRGKGSVNPDNQ 244 (365)
T ss_pred ceeEEe----cCcee-EEeeecCCCCCcccccC--CCCCCCCCCCEEeccEEEEEEECCCCCCCCEEEEeeccccCCCCC
Confidence 998763 57788 67999999999999986 8899999999999999999999999999999999999999774 5
Q ss_pred CcccEEEEEEeecCCCcccccccceeeccCCHHHHhCCcEEEEecCCCcEEEEEeCCCccccCCcEEEEcCCCCCCCCCC
Q 019828 167 VTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRP 246 (335)
Q Consensus 167 ~~GDliv~i~~~~h~~F~R~g~dL~~~~~I~l~eAl~G~~~~i~~ldGr~l~v~ip~g~vi~~g~~~~i~geGmP~~~~~ 246 (335)
.+|||||+|++++|+.|+|+|+||+++++|||.|||+|+++.|+||||+.|.|++|++ +++|++++|+|+|||..+ .
T Consensus 245 ~~GDL~v~i~v~~h~~f~R~G~dL~~~~~Isl~eAl~G~~~~i~tldG~~v~V~Ip~g--~~~g~~irl~GkG~p~~~-~ 321 (365)
T PRK14285 245 QYGDLYIKILIKPHKIFKRNGKDLYATLPISFTQAALGKEIKIQTIASKKIKIKIPKG--TENDEQIIIKNEGMPILH-T 321 (365)
T ss_pred CCCCEEEEEEEecCCCeEEeccceEEEEecCHHHHhCCCEEEEECCCCCEEEEEeCCC--cCCCcEEEECCCCccCCC-C
Confidence 6899999999999999999999999999999999999999999999999999999998 899999999999999764 3
Q ss_pred CCCCceEEEEEEeCCCCCCHHHHHHHHhhCCCCC
Q 019828 247 FMRGKLYIHFTVDFPESLSPDQCKMLETVLPPRT 280 (335)
Q Consensus 247 ~~~GdL~i~f~V~fP~~l~~~~~~~L~~~lp~~~ 280 (335)
..+|||||+|+|++|+.|+++++++|++++...+
T Consensus 322 ~~~GDL~V~~~v~~P~~l~~~q~~~l~~l~~~~~ 355 (365)
T PRK14285 322 EKFGNLILIIKIKTPKNLNSNAIKLLENLSKELK 355 (365)
T ss_pred CCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 3579999999999999999999999999985443
No 16
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=100.00 E-value=1.4e-58 Score=449.71 Aligned_cols=261 Identities=31% Similarity=0.624 Sum_probs=236.5
Q ss_pred CchhhhhhhcCCCCCCCCCCCCCCCCCCCceEEEEEeehhhhhcCceeEEeeeeeEecCCCCCCCccCCC-cccCCCCCC
Q 019828 9 DPFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGA-SMKCSGCQG 87 (335)
Q Consensus 9 ~~~diF~~fFgg~~~~~~~~~~~~~~~g~d~~~~l~vtLee~y~G~~~~i~~~r~~~C~~C~G~G~~~~~-~~~C~~C~G 87 (335)
++.|+|++|||+++ +++..+..++++++|+.+.|.|||||+|+|+++++.++|.++|.+|+|+|..... ..+|+.|+|
T Consensus 90 ~~~~~f~~~fg~~~-g~~~~~~~~~~~~~d~~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G 168 (354)
T TIGR02349 90 DFGDIFGDFFGGGG-GSGRRRRSGPRRGEDLRYDLELTFEEAVFGVEKEIEIPRKESCETCHGTGAKPGTDPKTCPTCGG 168 (354)
T ss_pred chhhhHHHHhccCc-ccCccccCCCCCCCCeEEEEEEEHHHHhCCeeEEEEeecCCcCCCCCCCCCCCCCCCccCCCCCC
Confidence 46689999998531 1111112345689999999999999999999999999999999999999998766 468999999
Q ss_pred ccEEEEEEecCCccceeeeecCCCCCceeEEEcCcCCCCCCCCceEEEeeEEEEEEecCCCcCCCeEEecCCCCCCC-CC
Q 019828 88 SGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAP-DT 166 (335)
Q Consensus 88 ~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~~~e~k~l~V~Ip~G~~~g~~i~~~g~G~~~~-~~ 166 (335)
+|.++..++++|||+|+ +++|+.|+|+|+++. +.|+.|+|++++.+.+.++|.||+|+++|++|+|+|+|++.+ +.
T Consensus 169 ~G~~~~~~~~~~g~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~ 245 (354)
T TIGR02349 169 TGQVRRQQGTPFGFFQQ-QQTCPTCGGEGKIIK--EPCSTCKGKGRVKERKTITVKIPAGVDTGQRLRVSGKGNAGENGG 245 (354)
T ss_pred eeEEEEEEeccCCceEE-EEecCCCCCcceecC--CCCCCCCCCcEecccceEEEEECCCCCCCCEEEEecCccCCCCCC
Confidence 99999999999999987 679999999999986 789999999999999999999999999999999999999854 56
Q ss_pred CcccEEEEEEeecCCCcccccccceeeccCCHHHHhCCcEEEEecCCCcEEEEEeCCCccccCCcEEEEcCCCCCCCCCC
Q 019828 167 VTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRP 246 (335)
Q Consensus 167 ~~GDliv~i~~~~h~~F~R~g~dL~~~~~I~l~eAl~G~~~~i~~ldGr~l~v~ip~g~vi~~g~~~~i~geGmP~~~~~ 246 (335)
.+|||||+|++++|+.|+|+|+||++++.|||.|||+|+++.|+|||| .+.|.+|++ +++|++++|+|+|||..+ .
T Consensus 246 ~~GDl~v~i~v~~h~~f~r~g~DL~~~~~isl~eAl~G~~~~i~~ldG-~i~v~ip~g--~~~g~~~~i~g~G~p~~~-~ 321 (354)
T TIGR02349 246 PNGDLYVVIRVKPHKIFERDGNDLYIEVPISFTQAILGGEIEVPTLDG-DVKLKIPAG--TQSGTVFRLKGKGVPRLR-G 321 (354)
T ss_pred CCCCEEEEEEEecCcceEEecCCEEEEEEeCHHHHhCCCeEEEecCCc-eEEEEECCc--ccCCcEEEECCCCcCCCC-C
Confidence 789999999999999999999999999999999999999999999999 589999988 899999999999999764 3
Q ss_pred CCCCceEEEEEEeCCCCCCHHHHHHHHhhCC
Q 019828 247 FMRGKLYIHFTVDFPESLSPDQCKMLETVLP 277 (335)
Q Consensus 247 ~~~GdL~i~f~V~fP~~l~~~~~~~L~~~lp 277 (335)
..+|||||+|+|.||+.|+++++++|+++|.
T Consensus 322 ~~~GDL~i~~~v~~P~~l~~~~~~~l~~~~~ 352 (354)
T TIGR02349 322 NGRGDLLVTVKVETPKNLSKEQKELLEELAE 352 (354)
T ss_pred CCCCCEEEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999999999985
No 17
>PRK14282 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.8e-58 Score=449.48 Aligned_cols=259 Identities=27% Similarity=0.551 Sum_probs=235.2
Q ss_pred hhhhhhcCCCCCCCCCCCCCCCCCCCceEEEEEeehhhhhcCceeEEeeeeeEecCCCCCCCccCCCc-ccCCCCCCccE
Q 019828 12 DIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGAS-MKCSGCQGSGM 90 (335)
Q Consensus 12 diF~~fFgg~~~~~~~~~~~~~~~g~d~~~~l~vtLee~y~G~~~~i~~~r~~~C~~C~G~G~~~~~~-~~C~~C~G~G~ 90 (335)
|+|++|||+++ +++++..++++++|+.+.|.|||||+|+|+++++.++|.++|.+|+|+|...+.. .+|+.|+|+|+
T Consensus 103 d~f~~~fgg~~--~~~~~~~~~~~g~di~~~l~~slee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~ 180 (369)
T PRK14282 103 DIFDIFFGERR--TQEEQREYARRGEDIRYEIEVTLSDLINGAEIPVEYDRYETCPHCGGTGVEPGSGYVTCPKCHGTGR 180 (369)
T ss_pred hhhhHhhcccC--CcccccCCCCCCCCeEEEEEEEHHHhcCCeEEEEEeeecccCCCCCccCCCCCCCCcCCCCCCCcCE
Confidence 78999997421 1111123346799999999999999999999999999999999999999987654 68999999999
Q ss_pred EEEEEecCCccceeeeecCCCCCceeEEEcCcCCCCCCCCceEEEeeEEEEEEecCCCcCCCeEEecCCCCCCC-CCCcc
Q 019828 91 KVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAP-DTVTG 169 (335)
Q Consensus 91 ~~~~~~~gpg~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~~~e~k~l~V~Ip~G~~~g~~i~~~g~G~~~~-~~~~G 169 (335)
++..++++|||+++ +++|+.|+|+|+++. +.|+.|+|++++.+.++|+|.||||+.+|++|+|+|+|++.+ +..+|
T Consensus 181 ~~~~~~~~~G~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~G 257 (369)
T PRK14282 181 IREERRSFFGVFVS-ERTCERCGGTGKIPG--EYCHECGGSGRIRRRVRTTVKIPAGVEDGTVLRITGGGNAGYYGGPYG 257 (369)
T ss_pred EEEEEEccCcceEE-EEECCCCCCcceeCC--CCCCCCCCceeEEEEEEEEEEeCCCCCCCCEEEEecccCCCCCCCCCC
Confidence 99999999999876 679999999999985 889999999999999999999999999999999999999854 56789
Q ss_pred cEEEEEEeecCCCcccccccceeeccCCHHHHhCCcEEEEecCCCcEEEEEeCCCccccCCcEEEEcCCCCCCCCCCCCC
Q 019828 170 DIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMR 249 (335)
Q Consensus 170 Dliv~i~~~~h~~F~R~g~dL~~~~~I~l~eAl~G~~~~i~~ldGr~l~v~ip~g~vi~~g~~~~i~geGmP~~~~~~~~ 249 (335)
||||+|++++|+.|+|+|+||++++.|||.|||+|+++.|+||||+.|.|+||+| +++|++++|+|+|||..+ ...+
T Consensus 258 Dl~i~i~v~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~i~v~Ip~g--~~~g~~iri~GkG~p~~~-~~~~ 334 (369)
T PRK14282 258 DLYVIVRVRPDPRFKRSGSDLIYDVTIDYLQAILGTTVEVPLPEGGTTMLKIPPG--TQPETVFRLKGKGLPNMR-YGRR 334 (369)
T ss_pred CEEEEEEEecCCcEEEecCCEEEEEEeCHHHHhCCCEEEEeCCCCcEEEEEeCCC--cCCCCEEEECCCCCCCCC-CCCC
Confidence 9999999999999999999999999999999999999999999999899999998 899999999999999753 3468
Q ss_pred CceEEEEEEeCCCCCCHHHHHHHHhhCCC
Q 019828 250 GKLYIHFTVDFPESLSPDQCKMLETVLPP 278 (335)
Q Consensus 250 GdL~i~f~V~fP~~l~~~~~~~L~~~lp~ 278 (335)
|||||+|+|.+|+.|+.+++++|++++..
T Consensus 335 GDL~V~~~v~~P~~l~~~~~~ll~~l~~~ 363 (369)
T PRK14282 335 GDLIVNVHVEIPKRLSREERKLLKELAKK 363 (369)
T ss_pred CCEEEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999853
No 18
>PRK14279 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.3e-58 Score=451.68 Aligned_cols=251 Identities=29% Similarity=0.591 Sum_probs=223.6
Q ss_pred hhhhhhcCCCCCCCCCCCCCCCCCCCceEEEEEeehhhhhcCceeEEeeeeeEecCCCCCCCccCCCc-ccCCCCCCccE
Q 019828 12 DIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGAS-MKCSGCQGSGM 90 (335)
Q Consensus 12 diF~~fFgg~~~~~~~~~~~~~~~g~d~~~~l~vtLee~y~G~~~~i~~~r~~~C~~C~G~G~~~~~~-~~C~~C~G~G~ 90 (335)
|||+.|||++ +++.+..++++++|+.+.|.|||||+|+|+++++.+.+.++|++|+|+|...++. .+|+.|+|+|+
T Consensus 125 d~f~~~fg~~---~~~~~~~~~~~g~di~~~l~ltLee~~~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~ 201 (392)
T PRK14279 125 DLFGGLFNRG---GGSARPSRPRRGNDLETETTLDFVEAAKGVTMPLRLTSPAPCTTCHGSGARPGTSPKVCPTCNGSGV 201 (392)
T ss_pred hhhhhhhcCC---CcccccCCCCCCCCeEEEEEEEHHHHhCCeEEEEeeeccccCCCCccccccCCCCCCCCCCCcceEE
Confidence 5566666531 1111223456899999999999999999999999999999999999999987754 78999999998
Q ss_pred EEEEEecCCccceeeeecCCCCCceeEEEcCcCCCCCCCCceEEEeeEEEEEEecCCCcCCCeEEecCCCCCCC-CCCcc
Q 019828 91 KVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAP-DTVTG 169 (335)
Q Consensus 91 ~~~~~~~gpg~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~~~e~k~l~V~Ip~G~~~g~~i~~~g~G~~~~-~~~~G 169 (335)
++..+ | ++ +++++|+.|+|+|+++. +.|+.|+|++++.+.+.++|.||||+++|++|+|+|+|++.+ +..+|
T Consensus 202 ~~~~~--g--~~-~~~~~C~~C~G~G~~i~--~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~G 274 (392)
T PRK14279 202 ISRNQ--G--AF-GFSEPCTDCRGTGSIIE--DPCEECKGTGVTTRTRTINVRIPPGVEDGQRIRLAGQGEAGLRGAPSG 274 (392)
T ss_pred EEEEe--c--ce-EEEEecCCCCceeEEeC--CcCCCCCCCeEEEEeeeeEEEeCCCCCCCcEEEEeCCccCCCCCCCCC
Confidence 76543 3 44 46799999999999986 889999999999999999999999999999999999999876 45689
Q ss_pred cEEEEEEeecCCCcccccccceeeccCCHHHHhCCcEEEEecCCCcEEEEEeCCCccccCCcEEEEcCCCCCCCCCCCCC
Q 019828 170 DIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMR 249 (335)
Q Consensus 170 Dliv~i~~~~h~~F~R~g~dL~~~~~I~l~eAl~G~~~~i~~ldGr~l~v~ip~g~vi~~g~~~~i~geGmP~~~~~~~~ 249 (335)
||||+|++++|+.|+|+|+||++++.|||.+||+|+++.|+||||+ +.|+||+| +++|++++|+|+|||.. .+.+
T Consensus 275 DL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~~ldg~-i~v~Ip~g--~~~g~~iri~g~G~p~~--~~~~ 349 (392)
T PRK14279 275 DLYVTVHVRPDKVFGRDGDDLTVTVPVSFTELALGSTLSVPTLDGP-VGVKVPAG--TADGRILRVRGRGVPKR--SGGA 349 (392)
T ss_pred CEEEEEEEecCCcceeecCcEEEEEEccHHHHcCCceEEEEcCCce-EEEEECCC--CCCCCEEEECCCCCCCC--CCCC
Confidence 9999999999999999999999999999999999999999999998 89999998 89999999999999963 3568
Q ss_pred CceEEEEEEeCCCCCCHHHHHHHHhhCC
Q 019828 250 GKLYIHFTVDFPESLSPDQCKMLETVLP 277 (335)
Q Consensus 250 GdL~i~f~V~fP~~l~~~~~~~L~~~lp 277 (335)
|||||+|+|.||++|+++|+++|++++.
T Consensus 350 GDL~I~~~v~~P~~Ls~~q~~~l~~~~~ 377 (392)
T PRK14279 350 GDLLVTVKVAVPPNLDGAAAEALEAYAE 377 (392)
T ss_pred CCEEEEEEEECCCCCCHHHHHHHHHHHh
Confidence 9999999999999999999999999995
No 19
>PRK14284 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=5.5e-58 Score=450.34 Aligned_cols=257 Identities=27% Similarity=0.540 Sum_probs=228.4
Q ss_pred hhhhhhhcCCCCCC-CCCCCCCCCCCCCceEEEEEeehhhhhcCceeEEeeeeeEecCCCCCCCccCCCc-ccCCCCCCc
Q 019828 11 FDIFQSFFGGSPFG-GGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGAS-MKCSGCQGS 88 (335)
Q Consensus 11 ~diF~~fFgg~~~~-~~~~~~~~~~~g~d~~~~l~vtLee~y~G~~~~i~~~r~~~C~~C~G~G~~~~~~-~~C~~C~G~ 88 (335)
.|||++|||+++++ +++.+..+++++.|+.+.|.|||||+|+|+++++.+.+.+.|.+|+|+|++.+.. .+|+.|+|+
T Consensus 105 ~d~f~~~fgg~g~~~~~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~ 184 (391)
T PRK14284 105 GSFFEGLFGGLGEAFGMRGGPAGARQGASKKVHITLSFEEAAKGVEKELLVSGYKSCDACSGSGANSSQGIKVCDRCKGS 184 (391)
T ss_pred ccchhhhccCccccccccccCCCcCCCCCeEEEEEEEHHHHhCCeeEEEEEeeeccCCCCcccccCCCCCCeecCccCCe
Confidence 47899999752211 1111123346789999999999999999999999999999999999999987664 789999999
Q ss_pred cEEEEEEecCCccceeeeecCCCCCceeEEEcCcCCCCCCCCceEEEeeEEEEEEecCCCcCCCeEEecCCCCCCC-CCC
Q 019828 89 GMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAP-DTV 167 (335)
Q Consensus 89 G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~~~e~k~l~V~Ip~G~~~g~~i~~~g~G~~~~-~~~ 167 (335)
|.++..+ |+++ ++++|+.|+|+|+++. ++|+.|+|++++.+.++|+|+||||+++|++|+|+|+|++.+ +..
T Consensus 185 G~v~~~~----G~~~-~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~ 257 (391)
T PRK14284 185 GQVVQSR----GFFS-MASTCPECGGEGRVIT--DPCSVCRGQGRIKDKRSVHVHIPAGVDSGMRLKMEGYGDAGQNGAP 257 (391)
T ss_pred eEEEEEe----ceEE-EEEECCCCCCCCcccC--CcCCCCCCcceecceEEEEEEECCCCCCCCEEEEeccccCCCCCCC
Confidence 9877543 4554 6789999999999986 889999999999999999999999999999999999999977 567
Q ss_pred cccEEEEEEeecCCCcccccccceeeccCCHHHHhCCcEEEEecCC-CcEEEEEeCCCccccCCcEEEEcCCCCCCCCCC
Q 019828 168 TGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLD-GRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRP 246 (335)
Q Consensus 168 ~GDliv~i~~~~h~~F~R~g~dL~~~~~I~l~eAl~G~~~~i~~ld-Gr~l~v~ip~g~vi~~g~~~~i~geGmP~~~~~ 246 (335)
||||||+|++++|+.|+|+|+||+++++|||.+||+|+++.|+||| |+.|.|+||++ +++|++++|+|+|||..+ .
T Consensus 258 ~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tld~g~~i~v~Ip~g--~~~g~~~~i~g~G~p~~~-~ 334 (391)
T PRK14284 258 AGDLYVFIDVEPHPVFERRGDDLILELPIGFVDAALGMKKEIPTLLKEGTCRLTIPEG--IQSGTILKVRGQGFPNVH-G 334 (391)
T ss_pred CCCEEEEEEEecCCCceeecCCEEEEEEecHHHHhCCCeEEEeecCCCcEEEEEECCc--cCCCeEEEECCCCCCCCC-C
Confidence 8999999999999999999999999999999999999999999999 67899999988 899999999999999764 3
Q ss_pred CCCCceEEEEEEeCCCCCCHHHHHHHHhhCC
Q 019828 247 FMRGKLYIHFTVDFPESLSPDQCKMLETVLP 277 (335)
Q Consensus 247 ~~~GdL~i~f~V~fP~~l~~~~~~~L~~~lp 277 (335)
..+|||||+|+|.||+.|+++++++|++++.
T Consensus 335 ~~~GDL~V~~~v~~P~~l~~~q~~ll~~l~~ 365 (391)
T PRK14284 335 KGRGDLLVRISVETPQNLSEEQKELLRQFAA 365 (391)
T ss_pred CCCCcEEEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999999999984
No 20
>PRK14295 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.8e-57 Score=443.76 Aligned_cols=235 Identities=28% Similarity=0.552 Sum_probs=218.1
Q ss_pred CCCCCCceEEEEEeehhhhhcCceeEEeeeeeEecCCCCCCCccCCCc-ccCCCCCCccEEEEEEecCCccceeeeecCC
Q 019828 32 RQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGAS-MKCSGCQGSGMKVSIRHLGPSMIQQMQHPCN 110 (335)
Q Consensus 32 ~~~~g~d~~~~l~vtLee~y~G~~~~i~~~r~~~C~~C~G~G~~~~~~-~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~ 110 (335)
++++++|+.+.|.|||||+|+|++++|.+++.++|.+|+|+|.+.+.. .+|+.|+|+|.++..+ | ++ +++++|+
T Consensus 135 ~~~~g~di~~~l~lsLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~--g--~~-~~~~~C~ 209 (389)
T PRK14295 135 QPRRGADVESEVTLSFTEAIDGATVPLRLTSQAPCPACSGTGAKNGTTPRVCPTCSGTGQVSRNS--G--GF-SLSEPCP 209 (389)
T ss_pred CCCCCCCEEEEEEEEHHHHhCCceEEEEeeccccCCCCcccccCCCCCCcCCCCCCCEeEEEEEe--c--ce-EEEEecC
Confidence 346799999999999999999999999999999999999999988764 7899999999877654 3 34 4678999
Q ss_pred CCCceeEEEcCcCCCCCCCCceEEEeeEEEEEEecCCCcCCCeEEecCCCCCCC-CCCcccEEEEEEeecCCCccccccc
Q 019828 111 ECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDD 189 (335)
Q Consensus 111 ~C~G~G~~i~~~~~C~~C~G~g~~~e~k~l~V~Ip~G~~~g~~i~~~g~G~~~~-~~~~GDliv~i~~~~h~~F~R~g~d 189 (335)
.|+|+|+++. ++|+.|+|++++.+.+.++|.||+|+++|++|+|+|+|++.+ +..+|||||+|++++|+.|+|+|+|
T Consensus 210 ~C~G~G~~~~--~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~D 287 (389)
T PRK14295 210 DCKGRGLIAD--DPCLVCKGSGRAKSSRTMQVRIPAGVSDGQRIRLRGKGAPGERGGPAGDLYVVVHVDPHPVFGRSGDN 287 (389)
T ss_pred CCcceeEEec--cCCCCCCCCceEeeeeEEEEEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEecCCCEEEecCC
Confidence 9999999986 889999999999999999999999999999999999999864 5678999999999999999999999
Q ss_pred ceeeccCCHHHHhCCcEEEEecCCCcEEEEEeCCCccccCCcEEEEcCCCCCCCCCCCCCCceEEEEEEeCCCCCCHHHH
Q 019828 190 LFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQC 269 (335)
Q Consensus 190 L~~~~~I~l~eAl~G~~~~i~~ldGr~l~v~ip~g~vi~~g~~~~i~geGmP~~~~~~~~GdL~i~f~V~fP~~l~~~~~ 269 (335)
|+++++|||.+||+|+++.|+||||+.|.|+||++ +++|++++|+|+|||.. .+.+|||||+|+|.||++|+++|+
T Consensus 288 L~~~~~Isl~eAl~G~~~~I~tldG~~~~v~ip~g--~~~g~~iri~G~G~p~~--~~~~GDL~i~~~v~~P~~Ls~~qk 363 (389)
T PRK14295 288 LTVTVPVTFPEAALGAEVRVPTLGGPPVTVKLPPG--TPNGRVLRVRGKGAVRK--DGTRGDLLVTVEVAVPKDLSGKAR 363 (389)
T ss_pred EEEEEeecHHHHhCCCeEEEECCCCCEEEEEECCc--cCCCcEEEECCCCcCCC--CCCCCCEEEEEEEECCCCCCHHHH
Confidence 99999999999999999999999999999999998 89999999999999964 346899999999999999999999
Q ss_pred HHHHhhCC
Q 019828 270 KMLETVLP 277 (335)
Q Consensus 270 ~~L~~~lp 277 (335)
++|++++.
T Consensus 364 ~~l~~l~~ 371 (389)
T PRK14295 364 EALEAFRE 371 (389)
T ss_pred HHHHHHHh
Confidence 99999985
No 21
>PRK14301 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.8e-57 Score=442.68 Aligned_cols=255 Identities=29% Similarity=0.567 Sum_probs=227.7
Q ss_pred chhhhhhhcCCCCCCCCCCCCCCCCCCCceEEEEEeehhhhhcCceeEEeeeeeEecCCCCCCCccCCCc-ccCCCCCCc
Q 019828 10 PFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGAS-MKCSGCQGS 88 (335)
Q Consensus 10 ~~diF~~fFgg~~~~~~~~~~~~~~~g~d~~~~l~vtLee~y~G~~~~i~~~r~~~C~~C~G~G~~~~~~-~~C~~C~G~ 88 (335)
+.|||++|||+++. ++.+.++++++.|+.+.|.|||||+|+|+++++.+.+.+.|..|+|+|...... .+|+.|+|+
T Consensus 93 f~d~f~~~fg~g~~--~~~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~ 170 (373)
T PRK14301 93 FSDIFGDLFGFSGG--GSRRGPRPQAGSDLRYNLTVSFRQAAKGDEVTLRIPKNVTCDDCGGSGAAPGTSPETCRHCGGS 170 (373)
T ss_pred hHHHHHHHhhccCc--ccccCCCCCCCCCEEEEEeccHHHHhCCceEEEEeeecccCCCCCCcccCCCCCCcccCCccCe
Confidence 45788888873211 111223456899999999999999999999999999999999999999987664 689999999
Q ss_pred cEEEEEEecCCccceeeeecCCCCCceeEEEcCcCCCCCCCCceEEEeeEEEEEEecCCCcCCCeEEecCCCCCCC-CCC
Q 019828 89 GMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAP-DTV 167 (335)
Q Consensus 89 G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~~~e~k~l~V~Ip~G~~~g~~i~~~g~G~~~~-~~~ 167 (335)
|++... . ||++ ++++|+.|+|+|+++. +.|+.|+|++++.+.+.++|+||+|+++|++|+|+|+|++.+ +..
T Consensus 171 G~v~~~--~--G~~~-~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~ 243 (373)
T PRK14301 171 GQVRQS--Q--GFFQ-IAVPCPVCRGEGRVIT--HPCPKCKGSGIVQQTRELKVRIPAGVDTGSRLRLRGEGEPGVHGGP 243 (373)
T ss_pred eEEEEE--e--eeEE-EEEeCCCCCceeeecC--CCCCCCCCCceeccceEEEEEeCCCCcCCCEEEEeccccCCCCCCC
Confidence 987643 3 4554 5899999999999986 889999999999999999999999999999999999999865 567
Q ss_pred cccEEEEEEeecCCCcccccccceeeccCCHHHHhCCcEEEEecCCCcEEEEEeCCCccccCCcEEEEcCCCCCCCCCCC
Q 019828 168 TGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPF 247 (335)
Q Consensus 168 ~GDliv~i~~~~h~~F~R~g~dL~~~~~I~l~eAl~G~~~~i~~ldGr~l~v~ip~g~vi~~g~~~~i~geGmP~~~~~~ 247 (335)
+|||||+|++++|+.|+|+|+||+++++|+|.+||+|+++.|+||||+ +.|+||++ +++|++++|+|+|||..+ ..
T Consensus 244 ~GDLiv~i~v~~h~~f~r~G~DL~~~~~Isl~eAl~G~~~~v~tldG~-i~v~ip~g--~~~g~~~ri~g~G~p~~~-~~ 319 (373)
T PRK14301 244 PGDLYVVITVEDDKIFQRQGQDLVVTQEISFVQAALGDRIEVPTLDDP-VTLDIPKG--TQSGEVFRLRGKGLPYLG-SS 319 (373)
T ss_pred CcCEEEEEEEEECCCceeecCcEEEEEEecHHHHhCCCeEEEecCCcc-EEEEECCC--cCCCcEEEEcCCCCCCCC-CC
Confidence 899999999999999999999999999999999999999999999998 89999998 899999999999999864 34
Q ss_pred CCCceEEEEEEeCCCCCCHHHHHHHHhhCC
Q 019828 248 MRGKLYIHFTVDFPESLSPDQCKMLETVLP 277 (335)
Q Consensus 248 ~~GdL~i~f~V~fP~~l~~~~~~~L~~~lp 277 (335)
.+|||||+|+|.||+.|+++|+++|++++.
T Consensus 320 ~~GDL~I~~~V~~P~~l~~~q~~~l~~l~~ 349 (373)
T PRK14301 320 QKGDLLVEVSVVTPTKLTKRQEELLREFEA 349 (373)
T ss_pred CCCCEEEEEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999999999999985
No 22
>PRK14290 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=8.4e-57 Score=438.48 Aligned_cols=265 Identities=27% Similarity=0.556 Sum_probs=233.3
Q ss_pred CCchhhhhhhcCCCCCC---CC-CCCCCCCCCCCceEEEEEeehhhhhcCceeEEeeeeeEecCCCCCCCccCCCcccCC
Q 019828 8 HDPFDIFQSFFGGSPFG---GG-SSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGASMKCS 83 (335)
Q Consensus 8 ~~~~diF~~fFgg~~~~---~~-~~~~~~~~~g~d~~~~l~vtLee~y~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~ 83 (335)
.++.|+|++|||+++.+ ++ +...+.++++.|+.+.|.|||+|+|+|+++++.+.+.++|+.|+|+|.......+|+
T Consensus 90 ~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~~~~~di~~~l~lsLee~~~G~~~~i~~~r~~~C~~C~G~g~~~~~~~~C~ 169 (365)
T PRK14290 90 SDINDIFNQIFGGNFGSDFFSGFGNQQSTRNIDLDIYTNLDISLEDAYYGTEKRIKYRRNAMCPDCSGTGAKNGKLITCP 169 (365)
T ss_pred cchhHHHHHHhcCccccccccccccccCCCCCCCCEEEEEEecHHHhcCCEEEEEEeeecccCCCCccccCCCCCCccCC
Confidence 35779999999852100 11 111112235889999999999999999999999999999999999999876567999
Q ss_pred CCCCccEEEEEEecCCccceeeeecCCCCCceeEEEcCcCCCCCCCCceEEEeeEEEEEEecCCCcCCCeEEecCCCCCC
Q 019828 84 GCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEA 163 (335)
Q Consensus 84 ~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~~~e~k~l~V~Ip~G~~~g~~i~~~g~G~~~ 163 (335)
.|+|+|++...++.|+ +.+|.+.+|+.|.|+|+++. ++|+.|+|++++.+.+.++|.||||+.+|++|+|+|+|++
T Consensus 170 ~C~G~G~~~~~~~~g~-~~~~~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~- 245 (365)
T PRK14290 170 TCHGTGQQRIVRGQGF-FRMVTVTTCRTCGGRGRIPE--EKCPRCNGTGTVVVNEDISVKIPKGATDNLRLRVKGKGQS- 245 (365)
T ss_pred CCCCcCEEEEEeccCe-EEEEEEEeCCCCCCceeEcc--CCCCCCCCceeEEEeeEEEEEECCCCCCCcEEEEccccCC-
Confidence 9999999887775554 44667899999999999975 8999999999999999999999999999999999999996
Q ss_pred CCCCcccEEEEEEeecCCCcccccccceeeccCCHHHHhCCcEEEEecCCCcEEEEEeCCCccccCCcEEEEcCCCCCCC
Q 019828 164 PDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMY 243 (335)
Q Consensus 164 ~~~~~GDliv~i~~~~h~~F~R~g~dL~~~~~I~l~eAl~G~~~~i~~ldGr~l~v~ip~g~vi~~g~~~~i~geGmP~~ 243 (335)
++..||||||+|++++|+.|+|+|+||++++.|||.+||+|+++.|+|++|+ +.|+||++ +++|++++|+|+|||..
T Consensus 246 ~~~~~GDL~v~v~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~~~~g~-i~V~Ip~g--~~~g~~iri~g~G~p~~ 322 (365)
T PRK14290 246 YGGRTGDLYVVLRVNNDPNIQRINDDLYVDQKINFPQAALGGEIEIKLFREK-YNLKIPEG--TQPGEVLKIKGAGMPHL 322 (365)
T ss_pred CCCCCCCEEEEEEEcCCCCEEEecCCEEEEEEeCHHHHhCCCEEEEEcCCce-EEEEECCc--cCCCcEEEECCCCCCCC
Confidence 7888999999999999999999999999999999999999999999999986 89999988 89999999999999976
Q ss_pred CCCCCCCceEEEEEEeCCCCCCHHHHHHHHhhCCCCC
Q 019828 244 QRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPPRT 280 (335)
Q Consensus 244 ~~~~~~GdL~i~f~V~fP~~l~~~~~~~L~~~lp~~~ 280 (335)
. ...+|||||+|+|.+|+.|+++++++|+++|+.+.
T Consensus 323 ~-~~~~GDL~V~~~V~~P~~l~~~~~~ll~~~~~~~~ 358 (365)
T PRK14290 323 N-GHGSGDLLVRINVEVPKRLTSKQKELIREFFDIKE 358 (365)
T ss_pred C-CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHhhh
Confidence 3 33689999999999999999999999999997543
No 23
>PRK14293 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.4e-56 Score=438.19 Aligned_cols=264 Identities=28% Similarity=0.560 Sum_probs=236.5
Q ss_pred CchhhhhhhcCCCCCCCC-C--CCCCCCCCCCceEEEEEeehhhhhcCceeEEeeeeeEecCCCCCCCccCCCc-ccCCC
Q 019828 9 DPFDIFQSFFGGSPFGGG-S--SRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGAS-MKCSG 84 (335)
Q Consensus 9 ~~~diF~~fFgg~~~~~~-~--~~~~~~~~g~d~~~~l~vtLee~y~G~~~~i~~~r~~~C~~C~G~G~~~~~~-~~C~~ 84 (335)
++.|+|++|||+.+.+++ + .+.++++++.|+.+.|.|||||+|+|+++++.+++.++|..|+|+|...+.. .+|+.
T Consensus 86 ~~~d~f~~~fg~~~~~~~~~~~~~~~~~~kg~di~~~l~vsLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~ 165 (374)
T PRK14293 86 GFADIFETFFSGFGGAGGQGGRRRRRGPQRGDDLRYDLKLDFREAIFGGEKEIRIPHLETCETCRGSGAKPGTGPTTCST 165 (374)
T ss_pred chHHHHHHHhcccCCCCCCCccccccCccCCCCeEEEEEeeHHHHhCCceEEEEeeccccCCCCCCcCCCCCCCCeeCCC
Confidence 356899999974211111 0 1122346789999999999999999999999999999999999999987664 68999
Q ss_pred CCCccEEEEEEecCCccceeeeecCCCCCceeEEEcCcCCCCCCCCceEEEeeEEEEEEecCCCcCCCeEEecCCCCCCC
Q 019828 85 CQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAP 164 (335)
Q Consensus 85 C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~~~e~k~l~V~Ip~G~~~g~~i~~~g~G~~~~ 164 (335)
|+|+|++...++++||++++ +.+|+.|.|+|+++. +.|+.|+|++++.+.+.++|.||||+++|++|+|+|+|++.+
T Consensus 166 C~G~G~~~~~~~~~~g~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V~IppG~~~G~~i~l~g~G~~~~ 242 (374)
T PRK14293 166 CGGAGQVRRATRTPFGSFTQ-VSECPTCNGTGQVIE--DPCDACGGQGVKQVTKKLKINIPAGVDTGTRLRVSGEGDAGL 242 (374)
T ss_pred CCCcceEEEEEecCcceEEE-EeeCCCCCcceeEec--cCCCCCCCCcccccceEEEEEeCCCCCCCCEEEEccCccCCC
Confidence 99999999999999999886 589999999999985 889999999999999999999999999999999999999854
Q ss_pred -CCCcccEEEEEEeecCCCcccccccceeeccCCHHHHhCCcEEEEecCCCcEEEEEeCCCccccCCcEEEEcCCCCCCC
Q 019828 165 -DTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMY 243 (335)
Q Consensus 165 -~~~~GDliv~i~~~~h~~F~R~g~dL~~~~~I~l~eAl~G~~~~i~~ldGr~l~v~ip~g~vi~~g~~~~i~geGmP~~ 243 (335)
+..+|||||+|++++|+.|+|+|+||+++++|||.|||+|+++.|+||||+ +.|++|++ +++|++++|+|+|||..
T Consensus 243 ~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldG~-~~i~ip~~--~~~g~~~ri~g~G~p~~ 319 (374)
T PRK14293 243 RGGPPGDLYVYLFVKNDPEFRRDGINILSEIKISYLQAILGDTLEVDTVDGP-VELTIPAG--TQPNTVLTLENKGVPRL 319 (374)
T ss_pred CCCCCcCEEEEEEEeCCCccChhhhceEEEeccCHHHHhCCCEEEecCCCCC-EEEEeCCC--CCCCCEEEECCCCCCCC
Confidence 567899999999999999999999999999999999999999999999997 78999987 89999999999999987
Q ss_pred CCCCCCCceEEEEEEeCCCCCCHHHHHHHHhhCCC
Q 019828 244 QRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPP 278 (335)
Q Consensus 244 ~~~~~~GdL~i~f~V~fP~~l~~~~~~~L~~~lp~ 278 (335)
.+.+.+|||||+|+|.||++|+++++++|+++|..
T Consensus 320 ~~~~~~GDL~v~~~v~~P~~l~~~~~~l~~~l~~~ 354 (374)
T PRK14293 320 GNPVARGDHLITVKVKIPTRISDEERELLEKLAKI 354 (374)
T ss_pred CCCCCcCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 54456899999999999999999999999999953
No 24
>PRK10767 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.3e-56 Score=438.32 Aligned_cols=253 Identities=30% Similarity=0.616 Sum_probs=226.1
Q ss_pred chhhhhhhcCCCCCCCCCCCCCCCCCCCceEEEEEeehhhhhcCceeEEeeeeeEecCCCCCCCccCCCc-ccCCCCCCc
Q 019828 10 PFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGAS-MKCSGCQGS 88 (335)
Q Consensus 10 ~~diF~~fFgg~~~~~~~~~~~~~~~g~d~~~~l~vtLee~y~G~~~~i~~~r~~~C~~C~G~G~~~~~~-~~C~~C~G~ 88 (335)
+.|||+.|||++ ++++.++++++.|+.+.|.|||||+|+|+++++.+.+.++|+.|+|+|...+.. ..|+.|+|+
T Consensus 93 f~~~f~~~fgg~----~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~ 168 (371)
T PRK10767 93 FGDIFGDIFGGG----RGGGRQRARRGADLRYNMEITLEEAVRGVTKEIRIPTLVTCDTCHGSGAKPGTSPKTCPTCHGA 168 (371)
T ss_pred hhhhhhhhccCC----ccccCCCCCCCCCeEEEEEeehHHhhCCeeEEEeeeecccCCCCCCcccCCCCCCccCCCCCCe
Confidence 446777777632 111223456899999999999999999999999999999999999999987664 689999999
Q ss_pred cEEEEEEecCCccceeeeecCCCCCceeEEEcCcCCCCCCCCceEEEeeEEEEEEecCCCcCCCeEEecCCCCCC-CCCC
Q 019828 89 GMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEA-PDTV 167 (335)
Q Consensus 89 G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~~~e~k~l~V~Ip~G~~~g~~i~~~g~G~~~-~~~~ 167 (335)
|+++..+ ||++ ++.+|+.|+|+|+++. +.|+.|+|++++.+.+.++|.||||+++|++|+|+|+|++. ++..
T Consensus 169 G~~~~~~----g~~~-~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~ 241 (371)
T PRK10767 169 GQVRMQQ----GFFT-VQQTCPTCHGRGKIIK--DPCKKCHGQGRVEKEKTLSVKIPAGVDTGDRIRLSGEGEAGERGGP 241 (371)
T ss_pred eEEEEee----ceEE-EEEeCCCCCCceeECC--CCCCCCCCCceEeeeeeEEEecCCCCCCCcEEEEecCccCCCCCCC
Confidence 9876543 4664 7789999999999985 88999999999999999999999999999999999999984 4678
Q ss_pred cccEEEEEEeecCCCcccccccceeeccCCHHHHhCCcEEEEecCCCcEEEEEeCCCccccCCcEEEEcCCCCCCCCCCC
Q 019828 168 TGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPF 247 (335)
Q Consensus 168 ~GDliv~i~~~~h~~F~R~g~dL~~~~~I~l~eAl~G~~~~i~~ldGr~l~v~ip~g~vi~~g~~~~i~geGmP~~~~~~ 247 (335)
+|||||+|++++|+.|+|+|+||++++.|+|++||+|+++.|+|||| .+.|++|++ +++|++++|+|+|||..+ ..
T Consensus 242 ~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldG-~i~v~ip~g--~~~g~~~~i~g~G~p~~~-~~ 317 (371)
T PRK10767 242 AGDLYVQIHVKEHPIFERDGNDLYCEVPISFTTAALGGEIEVPTLDG-RVKLKIPEG--TQTGKLFRLRGKGVKSVR-SG 317 (371)
T ss_pred CcCEEEEEEEeeCCCEEEecCCEEEEEEeCHHHHhCCCeEEEecCCC-cEEEEeCCC--CCCCCEEEECCCCcCCCC-CC
Confidence 99999999999999999999999999999999999999999999999 489999998 899999999999999763 34
Q ss_pred CCCceEEEEEEeCCCCCCHHHHHHHHhhCC
Q 019828 248 MRGKLYIHFTVDFPESLSPDQCKMLETVLP 277 (335)
Q Consensus 248 ~~GdL~i~f~V~fP~~l~~~~~~~L~~~lp 277 (335)
.+|||||+|+|.||+.|+++++++|++++.
T Consensus 318 ~~GDL~v~~~v~~P~~l~~~~~~ll~~l~~ 347 (371)
T PRK10767 318 ARGDLYCQVVVETPVNLTKRQKELLEEFEE 347 (371)
T ss_pred CCCCEEEEEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999999999999995
No 25
>PRK14300 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.3e-56 Score=435.13 Aligned_cols=258 Identities=27% Similarity=0.564 Sum_probs=227.9
Q ss_pred CchhhhhhhcCCCCCCCCCCCC--CCCCCCCceEEEEEeehhhhhcCceeEEeeeeeEecCCCCCCCccCCCc-ccCCCC
Q 019828 9 DPFDIFQSFFGGSPFGGGSSRG--RRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGAS-MKCSGC 85 (335)
Q Consensus 9 ~~~diF~~fFgg~~~~~~~~~~--~~~~~g~d~~~~l~vtLee~y~G~~~~i~~~r~~~C~~C~G~G~~~~~~-~~C~~C 85 (335)
++.|+|++||++. |++++.+. ..++++.|+.+.|.|||+|+|+|+++++.+.+.+.|++|+|+|...+.. .+|+.|
T Consensus 90 ~~~~~f~~~f~~~-~gg~~~~~~~~~~~~g~di~~~l~~sLee~~~G~~k~i~~~r~~~C~~C~G~g~~~~~~~~~C~~C 168 (372)
T PRK14300 90 DINDIFGDFFSDF-MGGSRRSRPTSSKVRGSDLKYNLTINLEEAFHGIEKNISFSSEVKCDTCHGSGSEKGETVTTCDAC 168 (372)
T ss_pred chhhhHHHHHHhh-cCCCCCCCCCcCCCCCCCeeEEEEEEHHHHhCCceEEEEeeeccccCCCCCcccCCCCCCccCCCc
Confidence 3456777777531 21111111 1235789999999999999999999999999999999999999987764 789999
Q ss_pred CCccEEEEEEecCCccceeeeecCCCCCceeEEEcCcCCCCCCCCceEEEeeEEEEEEecCCCcCCCeEEecCCCCCC-C
Q 019828 86 QGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEA-P 164 (335)
Q Consensus 86 ~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~~~e~k~l~V~Ip~G~~~g~~i~~~g~G~~~-~ 164 (335)
+|+|+++.. .||++ ++.+|+.|+|+|+++. ++|+.|+|++++.+.+.++|.||+|+++|++|+|+|+|++. +
T Consensus 169 ~G~G~~~~~----~g~~~-~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~ 241 (372)
T PRK14300 169 SGVGATRMQ----QGFFT-IEQACHKCQGNGQIIK--NPCKKCHGMGRYHKQRNLSVNIPAGVENGTRIRHTGEGEAGIR 241 (372)
T ss_pred cCeEEEEEe----eceEE-EEEeCCCCCccceEeC--CCCCCCCCceEEEeeEEEEEEECCCCCCCcEEEEeccccCCCC
Confidence 999987642 35665 7789999999999986 88999999999999999999999999999999999999986 4
Q ss_pred CCCcccEEEEEEeecCCCcccccccceeeccCCHHHHhCCcEEEEecCCCcEEEEEeCCCccccCCcEEEEcCCCCCCCC
Q 019828 165 DTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQ 244 (335)
Q Consensus 165 ~~~~GDliv~i~~~~h~~F~R~g~dL~~~~~I~l~eAl~G~~~~i~~ldGr~l~v~ip~g~vi~~g~~~~i~geGmP~~~ 244 (335)
+..+|||||+|++++|+.|+|+|+||++++.|+|.+||+|+++.|+||||+.|.|+||+| +++|++++|+|+|||..+
T Consensus 242 ~~~~GDL~v~i~v~~h~~f~R~G~Dl~~~~~Isl~~Al~G~~~~i~~ldg~~i~v~Ip~g--~~~g~~iri~g~G~p~~~ 319 (372)
T PRK14300 242 GGNSGDLYVDIAIKPHDIYKVDGANLHCKLPISFVNAALGGEIEVPVIEGGKVNLTIPAG--TQNGDQLRLRSKGMSKMR 319 (372)
T ss_pred CCCCCCEEEEEEECCCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCCCEEEEEECCc--cCCCcEEEECCCCCCCCC
Confidence 678999999999999999999999999999999999999999999999998899999998 899999999999999763
Q ss_pred CCCCCCceEEEEEEeCCCCCCHHHHHHHHhhCC
Q 019828 245 RPFMRGKLYIHFTVDFPESLSPDQCKMLETVLP 277 (335)
Q Consensus 245 ~~~~~GdL~i~f~V~fP~~l~~~~~~~L~~~lp 277 (335)
...+|||||+|+|.||++|+++|+++|++++.
T Consensus 320 -~~~~GDL~V~~~v~~P~~ls~~qk~~l~~l~~ 351 (372)
T PRK14300 320 -STIRGDMLTHIHVEVPKNLSKRQRELLEEFKK 351 (372)
T ss_pred -CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999999999999984
No 26
>PRK14294 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.9e-56 Score=436.07 Aligned_cols=257 Identities=25% Similarity=0.492 Sum_probs=228.2
Q ss_pred CchhhhhhhcCCCCCCCCCCCCCCCCCCCceEEEEEeehhhhhcCceeEEeeeeeEecCCCCCCCccCCCc-ccCCCCCC
Q 019828 9 DPFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGAS-MKCSGCQG 87 (335)
Q Consensus 9 ~~~diF~~fFgg~~~~~~~~~~~~~~~g~d~~~~l~vtLee~y~G~~~~i~~~r~~~C~~C~G~G~~~~~~-~~C~~C~G 87 (335)
++.|||++|||.++++ ++++..++++++|+.+.|.|||||+|+|+++++.+.+.++|..|+|+|...... .+|+.|+|
T Consensus 91 ~~~d~f~~~fg~g~~~-~~~~~~~~~~g~d~~~~l~lslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G 169 (366)
T PRK14294 91 SFGDIFEDFFGFGGGR-RGRSRTAVRAGADLRYDLTLPFLEAAFGTEKEIRIQKLETCEECHGSGCEPGTSPTTCPQCGG 169 (366)
T ss_pred hhhhhHHHhhccCCCc-CCcccCCCCCCCCceEEEEeeHHHhcCCeEEEEEeeecccCCCCCCccccCCCCcccCCCcCC
Confidence 3568999999721111 111112346799999999999999999999999999999999999999987664 68999999
Q ss_pred ccEEEEEEecCCccceeeeecCCCCCceeEEEcCcCCCCCCCCceEEEeeEEEEEEecCCCcCCCeEEecCCCCCCC-CC
Q 019828 88 SGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAP-DT 166 (335)
Q Consensus 88 ~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~~~e~k~l~V~Ip~G~~~g~~i~~~g~G~~~~-~~ 166 (335)
+|.++.. + ||+| ++++|+.|+|+|+++. +.|+.|+|++++.+.+.++|.||||+++|++|+|+|+|++.+ +.
T Consensus 170 ~G~~~~~--~--G~~~-~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~ 242 (366)
T PRK14294 170 SGQVTQS--Q--GFFS-IRTTCPRCRGMGKVIV--SPCKTCHGQGRVRVSKTVQVKIPAGVDTGSRLRLRGEGEAGVRGG 242 (366)
T ss_pred eEEEEEE--e--eeEE-EEeeCCCCCCcCeecC--cCCCCCCCceEeecceeEEEecCCCCcCCcEEEEccCccCCCCCC
Confidence 9987643 3 4664 7899999999999986 889999999999999999999999999999999999999864 67
Q ss_pred CcccEEEEEEeecCCCcccccccceeeccCCHHHHhCCcEEEEecCCCcEEEEEeCCCccccCCcEEEEcCCCCCCCCCC
Q 019828 167 VTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRP 246 (335)
Q Consensus 167 ~~GDliv~i~~~~h~~F~R~g~dL~~~~~I~l~eAl~G~~~~i~~ldGr~l~v~ip~g~vi~~g~~~~i~geGmP~~~~~ 246 (335)
.+|||||+|++++|+.|+|+|+||++++.|||.|||+|+++.|+||||+ +.|.||+| +++|++++|+|+|||..+ .
T Consensus 243 ~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~-~~v~ip~g--~~~g~~iri~G~G~p~~~-~ 318 (366)
T PRK14294 243 PPGDLYVFLTVEPHEFFERDGNDVHCKVPISFVQAALGAQIEVPTLEGE-RELKIPKG--TQPGDIFRFKGKGIPSLR-G 318 (366)
T ss_pred CCCcEEEEEEEccCCcceecCCCEEEEEEeCHHHHhCCCeEEEECCCCc-EEEEECCC--cCCCCEEEECCCCCCCCC-C
Confidence 7999999999999999999999999999999999999999999999997 68999998 899999999999999764 3
Q ss_pred CCCCceEEEEEEeCCCCCCHHHHHHHHhhCC
Q 019828 247 FMRGKLYIHFTVDFPESLSPDQCKMLETVLP 277 (335)
Q Consensus 247 ~~~GdL~i~f~V~fP~~l~~~~~~~L~~~lp 277 (335)
..+|||||+|+|.||+.|+++++++|++++.
T Consensus 319 ~~~GDL~V~~~v~~P~~l~~~q~~ll~~~~~ 349 (366)
T PRK14294 319 GGRGDQIIEVEVKVPTRLTKKQEELLTEFAR 349 (366)
T ss_pred CCCCCEEEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999999999995
No 27
>PRK14292 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.6e-55 Score=430.52 Aligned_cols=261 Identities=28% Similarity=0.624 Sum_probs=234.9
Q ss_pred CCchhhhhhhcCCCCCCCCCCCCCCCCCCCceEEEEEeehhhhhcCceeEEeeeeeEecCCCCCCCccCCC--cccCCCC
Q 019828 8 HDPFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGA--SMKCSGC 85 (335)
Q Consensus 8 ~~~~diF~~fFgg~~~~~~~~~~~~~~~g~d~~~~l~vtLee~y~G~~~~i~~~r~~~C~~C~G~G~~~~~--~~~C~~C 85 (335)
+|+.|+|++|||++++++ +....+++++.|+.+.+.|||+|+|+|+++++.+++.+.|.+|+|+|..... ..+|+.|
T Consensus 85 ~d~~d~f~~~fg~~~~~~-~~~~~~~~~g~d~~~~l~~sLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~~C~~C 163 (371)
T PRK14292 85 FDPMDIFEQLFGGAGFGG-GRGRRGPARGDDLETEARITLEQARAGEEVEVEVDRLTECEHCHGSRTEPGGKPPKTCPTC 163 (371)
T ss_pred CChHHHHHHhhCCCCcCC-CCCcccccCCCCeEEEEeccHHHHcCCeEEEEEEEeeecCCCCcccccCCCCCCCccCCCC
Confidence 356799999998532211 1111234679999999999999999999999999999999999999988664 4689999
Q ss_pred CCccEEEEEEecCCccceeeeecCCCCCceeEEEcCcCCCCCCCCceEEEeeEEEEEEecCCCcCCCeEEecCCCCCCCC
Q 019828 86 QGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAPD 165 (335)
Q Consensus 86 ~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~~~e~k~l~V~Ip~G~~~g~~i~~~g~G~~~~~ 165 (335)
+|+|++...+++.+|++++ +.+|+.|+|+|+.+. +.|+.|+|++++.+.+.++|.||+|+++|++|+|+|+|++.++
T Consensus 164 ~G~G~~~~~~~~~~g~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~G~G~~~~~ 240 (371)
T PRK14292 164 RGAGAVRAQARTIFGVVET-QQPCPTCRGEGQIIT--DPCTVCRGRGRTLKAETVKVKLPRGIDEGYRIRVAGMGNEGPG 240 (371)
T ss_pred CCccEEEEEEeccCceEEE-eeecCCCcccceecC--CCCCCCCCceEEeecceEEEEECCCCCCCcEEEEecCcCCCCC
Confidence 9999999888888998875 789999999999985 8999999999999999999999999999999999999999776
Q ss_pred CCcccEEEEEEeecCCCcccccccceeeccCCHHHHhCCcEEEEecCCCcEEEEEeCCCccccCCcEEEEcCCCCCCCCC
Q 019828 166 TVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQR 245 (335)
Q Consensus 166 ~~~GDliv~i~~~~h~~F~R~g~dL~~~~~I~l~eAl~G~~~~i~~ldGr~l~v~ip~g~vi~~g~~~~i~geGmP~~~~ 245 (335)
.. |||||+|++++|+.|+|+|+||++++.|+|.|||+|+++.|+||||+. .|.+|+| ++++++++|+|+|||..+
T Consensus 241 ~~-GDL~v~i~v~~h~~f~r~g~dL~~~~~isl~eAl~G~~~~i~tldG~~-~v~ip~g--~~~g~~~~i~g~G~p~~~- 315 (371)
T PRK14292 241 GN-GDLYVHIEMEPHPELRREQEHLIYEARIGFAKAALGGQITVPTLDGPQ-VIEVKPG--TQHGDLHRLRGQGMPRLQ- 315 (371)
T ss_pred CC-CCEEEEEEEecCCccccchhceeEEeccCHHHHhCCCeEEEECCCCCE-EEecCCC--cCCCcEEEECCCCCCCCC-
Confidence 65 999999999999999999999999999999999999999999999984 7999998 899999999999999763
Q ss_pred CCCCCceEEEEEEeCCCCCCHHHHHHHHhhCC
Q 019828 246 PFMRGKLYIHFTVDFPESLSPDQCKMLETVLP 277 (335)
Q Consensus 246 ~~~~GdL~i~f~V~fP~~l~~~~~~~L~~~lp 277 (335)
...+|||||+|+|+||+.|+++|+++|++++.
T Consensus 316 ~~~~GDL~V~~~v~~P~~l~~~q~~ll~~~~~ 347 (371)
T PRK14292 316 GAGTGDLIVEYEIAVPKQLSPEAREALEAYAR 347 (371)
T ss_pred CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999999999999984
No 28
>PRK14291 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.6e-55 Score=429.18 Aligned_cols=258 Identities=29% Similarity=0.600 Sum_probs=225.3
Q ss_pred CchhhhhhhcCC---C-CCCCC---CCC---CCCCCCCCceEEEEEeehhhhhcCceeEEeeeeeEecCCCCCCCccCCC
Q 019828 9 DPFDIFQSFFGG---S-PFGGG---SSR---GRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGA 78 (335)
Q Consensus 9 ~~~diF~~fFgg---~-~~~~~---~~~---~~~~~~g~d~~~~l~vtLee~y~G~~~~i~~~r~~~C~~C~G~G~~~~~ 78 (335)
++.|+|++||+. + .|++. +++ ..++.+++|+.+.|.|||||+|+|+++++.+.+.++|..|+|+|...+.
T Consensus 92 ~~~d~f~~~f~~fg~~~~fg~~~~~~~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~ 171 (382)
T PRK14291 92 NIEDILEDVFDIFGFGDIFGRRRATRERRKTYQRPVKGEDIYQTVEISLEEAYTGTTVSLEVPRYVPCEACGGTGYDPGS 171 (382)
T ss_pred CHHHHHHHHHHhccccccccccccccccccccccccCCCCEEEEEEEEHHHhhCCEEEEEEEeeeccCCCCccccCCCCC
Confidence 566889888531 1 12210 011 1224578999999999999999999999999999999999999998776
Q ss_pred -cccCCCCCCccEEEEEEecCCccceeeeecCCCCCceeEEEcCcCCCCCCCCceEEEeeEEEEEEecCCCcCCCeEEec
Q 019828 79 -SMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFP 157 (335)
Q Consensus 79 -~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~~~e~k~l~V~Ip~G~~~g~~i~~~ 157 (335)
..+|+.|+|+|.++.. +++++++++|+.|+|+|. + ++.|+.|+|++++.+.++|+|+||||+.+|++|+|+
T Consensus 172 ~~~~C~~C~G~G~~~~~-----~g~~~~~~~C~~C~G~G~-~--~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~ 243 (382)
T PRK14291 172 GEKVCPTCGGSGEIYQR-----GGFFRISQTCPTCGGEGV-L--REPCSKCNGRGLVIKKETIKVRIPPGVDNGSKLRVP 243 (382)
T ss_pred CCccCCCCCCceEEEEe-----cceEEEEecCCCCCCceE-E--ccCCCCCCCCceEEeeeEEEEEeCCCCCCCCEEEEe
Confidence 4789999999987654 144567899999999995 4 488999999999999999999999999999999999
Q ss_pred CCCCCCC-CCCcccEEEEEEeecCCCcccccccceeeccCCHHHHhCCcEEEEecCCCcEEEEEeCCCccccCCcEEEEc
Q 019828 158 GEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAIN 236 (335)
Q Consensus 158 g~G~~~~-~~~~GDliv~i~~~~h~~F~R~g~dL~~~~~I~l~eAl~G~~~~i~~ldGr~l~v~ip~g~vi~~g~~~~i~ 236 (335)
|+|++.+ +..+|||||+|++++|+.|+|+|+||++++.|||.|||+|+++.|+||||+.|.|+||+| +++|++++|+
T Consensus 244 g~G~~~~~g~~~GDL~v~i~~~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~l~V~Ip~g--~~~G~~i~i~ 321 (382)
T PRK14291 244 GKGHAGRFGGPPGDLYIIVKVKPHPLFERRGDNLYLDVNITVAEAVLGTELEVPLLDGKKEKVKIPPG--TKEGDKIRVP 321 (382)
T ss_pred cCcCCCCCCCCCccEEEEEEEccCCCeeeecCCeEEEEEeeHHHHhCCCEEEEecCCCCEEEEEECCc--cCCCCEEEEC
Confidence 9999865 788999999999999999999999999999999999999999999999999899999998 8999999999
Q ss_pred CCCCCCCCCCCCCCceEEEEEEeCCC--CCC------HHHHHHHHhhCC
Q 019828 237 DEGMPMYQRPFMRGKLYIHFTVDFPE--SLS------PDQCKMLETVLP 277 (335)
Q Consensus 237 geGmP~~~~~~~~GdL~i~f~V~fP~--~l~------~~~~~~L~~~lp 277 (335)
|+|||..+ ...+|||||+|+|.||+ .|+ ++++++|++|+.
T Consensus 322 G~G~p~~~-~~~~GDL~V~~~V~~P~~~~ls~~~~~~~~~~~~~~~l~~ 369 (382)
T PRK14291 322 GKGMPRLK-GSGYGDLVVRVHIDVPKISMLSKLMGDGKKAKKLLKELDK 369 (382)
T ss_pred CCCCCCCC-CCCCCCEEEEEEEEeCCCcCcCccccCCHHHHHHHHHHHh
Confidence 99999864 34689999999999998 499 999888888764
No 29
>PRK14289 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=7.2e-55 Score=427.90 Aligned_cols=239 Identities=26% Similarity=0.584 Sum_probs=224.8
Q ss_pred CCCCCceEEEEEeehhhhhcCceeEEeeeeeEecCCCCCCCccCCCc-ccCCCCCCccEEEEEEecCCccceeeeecCCC
Q 019828 33 QRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGAS-MKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNE 111 (335)
Q Consensus 33 ~~~g~d~~~~l~vtLee~y~G~~~~i~~~r~~~C~~C~G~G~~~~~~-~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~ 111 (335)
+.++.|+.+.|.|||||+|+|+++++.+++.+.|..|+|+|...... ..|+.|+|+|+++..+++++|++++ +.+|+.
T Consensus 124 ~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~-~~~C~~ 202 (386)
T PRK14289 124 VFRGSDLRVKVKLNLKEISTGVEKKFKVKKYVPCSHCHGTGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQT-QSTCPT 202 (386)
T ss_pred CCCCCCeEEEEEEEHHHhhCCeEEEEEEEeecccCCCCCCCCCCCCCCCcCCCCcCeEEEEEEEecccceEEE-EEecCC
Confidence 45789999999999999999999999999999999999999987654 7899999999999999999999875 899999
Q ss_pred CCceeEEEcCcCCCCCCCCceEEEeeEEEEEEecCCCcCCCeEEecCCCCCCC-CCCcccEEEEEEeecCCCcccccccc
Q 019828 112 CKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDL 190 (335)
Q Consensus 112 C~G~G~~i~~~~~C~~C~G~g~~~e~k~l~V~Ip~G~~~g~~i~~~g~G~~~~-~~~~GDliv~i~~~~h~~F~R~g~dL 190 (335)
|+|+|+++. ..|+.|+|++++.+.+.++|+||+|+++|++|+|+|+|++.+ +..+|||||+|++++|+.|+|+++||
T Consensus 203 C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL 280 (386)
T PRK14289 203 CNGEGKIIK--KKCKKCGGEGIVYGEEVITVKIPAGVAEGMQLSMNGKGNAGKHGGVNGDLLVVIEEEPHPELIRDENDL 280 (386)
T ss_pred CCccccccC--cCCCCCCCCcEEeeeEEEEEEeCCCCCCCCEEEEeccccCCCCCCCCccEEEEEEEecCCcccccccce
Confidence 999999986 889999999999999999999999999999999999999864 67799999999999999999999999
Q ss_pred eeeccCCHHHHhCCcEEEEecCCCcEEEEEeCCCccccCCcEEEEcCCCCCCCCCCCCCCceEEEEEEeCCCCCCHHHHH
Q 019828 191 FVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCK 270 (335)
Q Consensus 191 ~~~~~I~l~eAl~G~~~~i~~ldGr~l~v~ip~g~vi~~g~~~~i~geGmP~~~~~~~~GdL~i~f~V~fP~~l~~~~~~ 270 (335)
++++.|+|.+||+|+++.|+||||+ +.|.||++ +++|++++|+|+|||..+ ...+|||||+|+|+||++|+++|++
T Consensus 281 ~~~~~Isl~eAl~G~~~~i~~ldg~-i~v~ip~g--~~~g~~~ri~g~G~p~~~-~~~~GDL~v~~~v~~P~~l~~~q~~ 356 (386)
T PRK14289 281 IYNLLLSVPTAALGGAVEVPTIDGK-AKVKIEAG--TQPGKVLRLRNKGLPSVN-GYGTGDLLVNVSVYIPETLSKEEKQ 356 (386)
T ss_pred eEEeccCHHHHhCCCeEEeecCCce-EEEEECCc--cCCCcEEEECCCCcCCCC-CCCCCcEEEEEEEEeCCCCCHHHHH
Confidence 9999999999999999999999997 89999998 799999999999999764 3468999999999999999999999
Q ss_pred HHHhhCCC
Q 019828 271 MLETVLPP 278 (335)
Q Consensus 271 ~L~~~lp~ 278 (335)
+|++++..
T Consensus 357 ~l~~l~~~ 364 (386)
T PRK14289 357 TLEKMENS 364 (386)
T ss_pred HHHHHHhh
Confidence 99999963
No 30
>PRK14283 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=6.3e-55 Score=427.09 Aligned_cols=238 Identities=26% Similarity=0.567 Sum_probs=223.4
Q ss_pred CCCCCceEEEEEeehhhhhcCceeEEeeeeeEecCCCCCCCccCCCc-ccCCCCCCccEEEEEEecCCccceeeeecCCC
Q 019828 33 QRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGAS-MKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNE 111 (335)
Q Consensus 33 ~~~g~d~~~~l~vtLee~y~G~~~~i~~~r~~~C~~C~G~G~~~~~~-~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~ 111 (335)
++++.|+.++|.|||+|+|+|+++++.+.+.+.|++|+|+|...+.. .+|+.|+|+|++...+++++|++++ +.+|+.
T Consensus 116 ~~kg~di~~~l~vsLed~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~-~~~C~~ 194 (378)
T PRK14283 116 PQRGADIYTEVEITLEEAASGVEKDIKVRHTKKCPVCNGSRAEPGSEVKTCPTCGGTGQVKQVRNTILGQMMN-VTTCPD 194 (378)
T ss_pred ccCCCCeEEEeeeeHHHHhCCcceEEEeeeeccCCCCCccccCCCCCCccCCCcCCccEEEEEEeccCceEEE-EEECCC
Confidence 46889999999999999999999999999999999999999987654 6899999999999999999998875 579999
Q ss_pred CCceeEEEcCcCCCCCCCCceEEEeeEEEEEEecCCCcCCCeEEecCCCCCCC-CCCcccEEEEEEeecCCCcccccccc
Q 019828 112 CKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDL 190 (335)
Q Consensus 112 C~G~G~~i~~~~~C~~C~G~g~~~e~k~l~V~Ip~G~~~g~~i~~~g~G~~~~-~~~~GDliv~i~~~~h~~F~R~g~dL 190 (335)
|+|+|+++. +.|+.|+|++++.+.+.++|.||||+++|++|+|+|+|++.+ +..+|||||+|++++|+.|+|+|+||
T Consensus 195 C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~r~G~DL 272 (378)
T PRK14283 195 CQGEGKIVE--KPCSNCHGKGVVRETKTISVKIPAGVETGSRLRVSGEGEMGDRGGEPGDLYVVIKVKPHKIFRREGANL 272 (378)
T ss_pred CCccceecC--CCCCCCCCceeeccceeEEEEECCCCCCCcEEEEeccccCCCCCCCCccEEEEEEEEcCCCEEEecCCE
Confidence 999999985 889999999999999999999999999999999999999865 56799999999999999999999999
Q ss_pred eeeccCCHHHHhCCcEEEEecCCCcEEEEEeCCCccccCCcEEEEcCCCCCCCCCCCCCCceEEEEEEeCCCCCCHHHHH
Q 019828 191 FVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCK 270 (335)
Q Consensus 191 ~~~~~I~l~eAl~G~~~~i~~ldGr~l~v~ip~g~vi~~g~~~~i~geGmP~~~~~~~~GdL~i~f~V~fP~~l~~~~~~ 270 (335)
++++.|+|.+||+|+++.|+|||| .|.|++|++ +++|++++|+|+|||... ...+|||||+|+|.||++|+++|++
T Consensus 273 ~~~~~Isl~eAl~G~~~~i~tldG-~i~v~ip~g--~~~g~~~ri~g~G~p~~~-~~~~GdL~v~~~v~~P~~l~~~q~~ 348 (378)
T PRK14283 273 YYEKPISFVQAALGDTVDVPTIDG-PVELKIPAG--TQSGTTFRLKGHGMPSLR-WSGKGNLYVKVKVVVPKKLSPKQKE 348 (378)
T ss_pred EEEEecCHHHHhcCCeEEEEcCCc-eEEEEeCCC--CCCCCEEEECCCCCCCCC-CCCCCCEEEEEEEEeCCCCCHHHHH
Confidence 999999999999999999999999 589999998 799999999999999763 3468999999999999999999999
Q ss_pred HHHhhCC
Q 019828 271 MLETVLP 277 (335)
Q Consensus 271 ~L~~~lp 277 (335)
+|++++.
T Consensus 349 ll~~~~~ 355 (378)
T PRK14283 349 LLREFAS 355 (378)
T ss_pred HHHHHHh
Confidence 9999984
No 31
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=100.00 E-value=2.1e-37 Score=295.59 Aligned_cols=200 Identities=27% Similarity=0.409 Sum_probs=169.2
Q ss_pred CchhhhhhhcCCCCCCCCCCCCCCCCCCCceEEEEEeehhhhhcCceeEEeeeeeEecCCCCCCCccCCCcccCCCCCCc
Q 019828 9 DPFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGASMKCSGCQGS 88 (335)
Q Consensus 9 ~~~diF~~fFgg~~~~~~~~~~~~~~~g~d~~~~l~vtLee~y~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~ 88 (335)
++.|+|+.|||+++ +..+...++++.|+.+.+.|||+|+|+|+.+++.+++.+ |+ |.
T Consensus 93 ~~~~~f~~~~g~~~---~~~~~~~~~kg~di~~~v~isLee~~~G~~k~i~~~~~~----~~----------------g~ 149 (306)
T PRK10266 93 DFDDIFSSIFGQHA---RQSRQRPAARGHDIEIEVAVFLEETLTEHKRTISYNLPV----YN----------------AF 149 (306)
T ss_pred CHHHHHHHHhCCCC---CCCCCCCCCCCCceEEEEEEEHHHhcCCceEEEEEeccc----cc----------------CC
Confidence 57799999998521 111122345789999999999999999999999887643 21 22
Q ss_pred cEEEEEEecCCccceeeeecCCCCCceeEEEcCcCCCCCCCCceEEEeeEEEEEEecCCCcCCCeEEecCCCCCCC-CCC
Q 019828 89 GMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAP-DTV 167 (335)
Q Consensus 89 G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~~~e~k~l~V~Ip~G~~~g~~i~~~g~G~~~~-~~~ 167 (335)
|. +++ ...+.++|.||+|+++|++|+|+|+|++.+ +..
T Consensus 150 G~-----------~~~------------------------------~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~ 188 (306)
T PRK10266 150 GM-----------IEQ------------------------------EIPKTLNVKIPAGVGNGQRIRLKGQGTPGENGGP 188 (306)
T ss_pred Ce-----------EEE------------------------------eeeEEEEEEECCCCcCCcEEEEecCCcCCCCCCC
Confidence 21 110 123679999999999999999999999865 567
Q ss_pred cccEEEEEEeecCCCcccccccceeeccCCHHHHhCCcEEEEecCCCcEEEEEeCCCccccCCcEEEEcCCCCCCCCCCC
Q 019828 168 TGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPF 247 (335)
Q Consensus 168 ~GDliv~i~~~~h~~F~R~g~dL~~~~~I~l~eAl~G~~~~i~~ldGr~l~v~ip~g~vi~~g~~~~i~geGmP~~~~~~ 247 (335)
+|||||+|++++|+.|+|+|+||+++++|||.+||+|+++.|+||||+ +.|++|++ +++|++++|+|+|||.. +
T Consensus 189 ~GDl~v~i~v~ph~~f~r~g~DL~~~~~Isl~~al~G~~~~i~~~~g~-v~v~ip~g--~~~g~~~ri~g~G~p~~---~ 262 (306)
T PRK10266 189 NGDLWLVIHIAPHPLFDIVGQDLEIVVPLAPWEAALGAKVTVPTLKES-ILLTIPPG--SQAGQRLRVKGKGLVSK---K 262 (306)
T ss_pred CccEEEEEEEcCCCCeEEeCCceEEEEecCHHHHhCCCEEEeeCCCcc-EEEEeCCC--cCCCCEEEECCCCCCCC---C
Confidence 899999999999999999999999999999999999999999999998 89999998 79999999999999974 2
Q ss_pred CCCceEEEEEEeCCCCCCHHHHHHHHhhCCC
Q 019828 248 MRGKLYIHFTVDFPESLSPDQCKMLETVLPP 278 (335)
Q Consensus 248 ~~GdL~i~f~V~fP~~l~~~~~~~L~~~lp~ 278 (335)
.+|||||+|+|.||+.|+++|+++|++++..
T Consensus 263 ~~GdL~v~~~v~~P~~l~~~q~~l~~~l~~~ 293 (306)
T PRK10266 263 QTGDLYAVLKIVMPPKPDEKTAALWQQLADA 293 (306)
T ss_pred CCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 5899999999999999999999999999853
No 32
>PRK14299 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.9e-37 Score=293.98 Aligned_cols=184 Identities=29% Similarity=0.548 Sum_probs=159.4
Q ss_pred CchhhhhhhcCCCC-CCCCC----CCCCCCCCCCceEEEEEeehhhhhcCceeEEeeeeeEecCCCCCCCccCCCcccCC
Q 019828 9 DPFDIFQSFFGGSP-FGGGS----SRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGASMKCS 83 (335)
Q Consensus 9 ~~~diF~~fFgg~~-~~~~~----~~~~~~~~g~d~~~~l~vtLee~y~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~ 83 (335)
+++|||++|||+++ +++.+ .....++++.|+.+.+.|||+|+|+|+++++.+.
T Consensus 97 ~~~d~f~~~fgg~~~~~~~g~~~~~~~~~~~~g~dl~~~l~isL~ea~~G~~~~i~l~---------------------- 154 (291)
T PRK14299 97 DFSDFFQQLFGGRGGFGGFGDLFGSVGRRARKGRDLEAELPLTLEEAYRGGEKVVEVA---------------------- 154 (291)
T ss_pred CHHHHHHHHhCCCCCCCCcccccccccCCCCCCCCEEEEEEecHHHHhCCCeEEEeeC----------------------
Confidence 46789999998521 11100 0012346789999999999999999999987531
Q ss_pred CCCCccEEEEEEecCCccceeeeecCCCCCceeEEEcCcCCCCCCCCceEEEeeEEEEEEecCCCcCCCeEEecCCCCCC
Q 019828 84 GCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEA 163 (335)
Q Consensus 84 ~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~~~e~k~l~V~Ip~G~~~g~~i~~~g~G~~~ 163 (335)
.+.++|+||||+++|++|+|+|+|++.
T Consensus 155 -----------------------------------------------------g~~~~V~Ip~G~~~G~~ir~~g~G~~~ 181 (291)
T PRK14299 155 -----------------------------------------------------GERLSVRIPPGVREGQVIRLAGKGRQG 181 (291)
T ss_pred -----------------------------------------------------CEEEEEecCCCcCCCcEEEECCCCCCC
Confidence 146899999999999999999999863
Q ss_pred CCCCcccEEEEEEeecCCCcccccccceeeccCCHHHHhCCcEEEEecCCCcEEEEEeCCCccccCCcEEEEcCCCCCCC
Q 019828 164 PDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMY 243 (335)
Q Consensus 164 ~~~~~GDliv~i~~~~h~~F~R~g~dL~~~~~I~l~eAl~G~~~~i~~ldGr~l~v~ip~g~vi~~g~~~~i~geGmP~~ 243 (335)
|||||+|++++|+.|+|+|+||+++++|||.+||+|+++.|+||||+ +.|++|++ +++|++++|+|+|||..
T Consensus 182 -----GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~v~tldG~-~~v~ip~~--~~~g~~~rl~g~G~p~~ 253 (291)
T PRK14299 182 -----GDLYLVVRLLPHPVFRLEGDDLYATVDVPAPIAVVGGKVRVMTLDGP-VEVTIPPR--TQAGRKLRLKGKGWPRG 253 (291)
T ss_pred -----CCEEEEEEEcCCCCeEEECCEEEEEEecCHHHHhCCCEEEEECCCCC-EEEEeCCC--cCCCCEEEECCCCCCCC
Confidence 99999999999999999999999999999999999999999999997 89999987 89999999999999963
Q ss_pred CCCCCCCceEEEEEEeCCCCCCHHHHHHHHhhCC
Q 019828 244 QRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLP 277 (335)
Q Consensus 244 ~~~~~~GdL~i~f~V~fP~~l~~~~~~~L~~~lp 277 (335)
++.+|||||+|+|.||+.|+++++++|++++.
T Consensus 254 --~~~~GDL~v~~~V~~P~~l~~~~~~~l~~l~~ 285 (291)
T PRK14299 254 --PAGRGDQYAEVRITIPTRPTPEEERLYKQLAE 285 (291)
T ss_pred --CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999999999999873
No 33
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=100.00 E-value=9.6e-33 Score=280.66 Aligned_cols=158 Identities=18% Similarity=0.230 Sum_probs=141.1
Q ss_pred CCCceEEEEEeehhhhhcCceeEEeeeeeEecCCCCCCCccCCCcccCCCCCCccEEEEEEecCCccceeeeecCCCCCc
Q 019828 35 RGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKG 114 (335)
Q Consensus 35 ~g~d~~~~l~vtLee~y~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G 114 (335)
..-++.+.|.|+|+++|+|+++++.+.|.+.| |.|
T Consensus 655 ~~~dI~y~l~vtLEeLY~G~tKkIKitR~V~~----g~G----------------------------------------- 689 (871)
T TIGR03835 655 TNVNLVYEEEVPQILFFNNQIKEIKYTRHTVD----GNT----------------------------------------- 689 (871)
T ss_pred cccceEEecccCHHHHhCCCeEEEEEEEeecc----CCC-----------------------------------------
Confidence 35688999999999999999999999987754 221
Q ss_pred eeEEEcCcCCCCCCCCceEEEeeEEEEEEecCCCcCCCeEEecCCCCCCCCCCcccEEEEEEeecCCCcccccccceeec
Q 019828 115 TGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEH 194 (335)
Q Consensus 115 ~G~~i~~~~~C~~C~G~g~~~e~k~l~V~Ip~G~~~g~~i~~~g~G~~~~~~~~GDliv~i~~~~h~~F~R~g~dL~~~~ 194 (335)
...+.+.+.++|+||+|+++|++|+|+|+|++.++. +|||||+|++++|+.|+|+|+|||+++
T Consensus 690 ----------------~ktvkE~ktLeVkIPpGVkdGqkIRf~GeGDegpgg-~GDLyVvIkVKPHp~FrRdGdDL~~~v 752 (871)
T TIGR03835 690 ----------------ESTTNEAITLEIQLPITSQLNISAIFKGFGHDFGNG-CGDLKVVFKVIPSNFFQIKNDGLHVAA 752 (871)
T ss_pred ----------------cceeeeeEEEEEecCCCCCCCCEEEeccccCCCCCC-CCCEEEEEEEcCCCCeEEECCeEEEEE
Confidence 113456789999999999999999999999987766 499999999999999999999999999
Q ss_pred cCCHHHHhCCcEEEEecCCCcEEEEEeCCCccccCCcEEEEcCCCCCCCCCCCCCCceEEEEEEe
Q 019828 195 TLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVD 259 (335)
Q Consensus 195 ~I~l~eAl~G~~~~i~~ldGr~l~v~ip~g~vi~~g~~~~i~geGmP~~~~~~~~GdL~i~f~V~ 259 (335)
.|+|.+||+|+++.|+||||+ +.|+||++ +++|++++|+|+|||.. ++.||||||+|+|.
T Consensus 753 ~ISL~EALLGgtIeIpTLDGr-VkLkIPpg--TqpGqvLRIkGKGMP~~--~~~RGDLyV~f~V~ 812 (871)
T TIGR03835 753 LVDPLVAYNGGIIDVFGPNKL-FNVRIPGG--IKVNDQVIFKDLGLTKT--KYDKGSLIVHLYYS 812 (871)
T ss_pred ecCHHHHhcCCEEEeeCCCCC-EEEeeCCC--CCCCcEEEECCCCCCCC--CCCCCCEEEEEEEe
Confidence 999999999999999999998 89999988 89999999999999954 34689999999986
No 34
>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....
Probab=99.87 E-value=2.1e-22 Score=155.85 Aligned_cols=81 Identities=41% Similarity=0.657 Sum_probs=70.1
Q ss_pred cceeeccCCHHHHhCCcEEEEecCCCcEEEEEeCCCccccCCcEEEEcCCCCCCCCCCCCCCceEEEEEEeCCCCCCHHH
Q 019828 189 DLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQ 268 (335)
Q Consensus 189 dL~~~~~I~l~eAl~G~~~~i~~ldGr~l~v~ip~g~vi~~g~~~~i~geGmP~~~~~~~~GdL~i~f~V~fP~~l~~~~ 268 (335)
||+++++|+|++|++|++++|+||||+.+.|++|++ +++|++++|+|+|||.+++++.+|||||+|+|.||++||++|
T Consensus 1 DL~~~~~I~l~~al~G~~i~i~~l~g~~~~i~ip~~--~~~g~~~~i~g~G~p~~~~~~~~GdL~v~~~V~~P~~ls~~q 78 (81)
T PF01556_consen 1 DLYCTIPISLKEALLGGTISIPTLDGKTIKIKIPPG--TQPGQQLRIKGKGMPKPKGGGKRGDLIVKFEVEFPKKLSPEQ 78 (81)
T ss_dssp EEEEEEEEEHHHHHH-EEEEEE-TTS-EEEEEETST---STT-EEEETTESEEESSSTTSBEEEEEEEEEE--SSTSHHH
T ss_pred CeEEEEEeCHHHHhCCCEEEEECCCCCEEEEeccCc--cCCCcEEeecCCCCCcCCCCCCcCCEEEEEEEECCCCCCHHH
Confidence 899999999999999999999999999999999998 899999999999999987666899999999999999999998
Q ss_pred HHH
Q 019828 269 CKM 271 (335)
Q Consensus 269 ~~~ 271 (335)
+++
T Consensus 79 k~l 81 (81)
T PF01556_consen 79 KEL 81 (81)
T ss_dssp HHH
T ss_pred hcC
Confidence 764
No 35
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=4e-20 Score=174.01 Aligned_cols=227 Identities=33% Similarity=0.575 Sum_probs=182.1
Q ss_pred hhhhhhhcCCCCCCCCC-CCCCCCCCCCceEEEEEeehhhhhcCceeEEeeeeeEecCCCCCCCccCCCcccCCCCCCcc
Q 019828 11 FDIFQSFFGGSPFGGGS-SRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGASMKCSGCQGSG 89 (335)
Q Consensus 11 ~diF~~fFgg~~~~~~~-~~~~~~~~g~d~~~~l~vtLee~y~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G 89 (335)
.|+|+.||+..|+..++ ......+++.++...++.+++++|.+...+....+.+.|. |.|+ ..| +-.
T Consensus 100 ~~~f~~~f~dfg~~~~g~~~~e~~~~g~~V~~~~e~~~~h~y~~~~~e~~r~~~v~~~-~~g~-------~~~---~~~- 167 (336)
T KOG0713|consen 100 NDIFSAFFGDFGVTVGGNPLEEALPKGSDVSSDLEKQLEHFYMGNFVEEVREKGVYKP-APGT-------RKC---NCR- 167 (336)
T ss_pred cchHHHhhcccccccCCCcccCCCCCCceEEeehhhchhhhhcccHHHHHhccCceee-cCcc-------ccc---CCh-
Confidence 68999999854332111 1223357899999999999999999988776666555543 1111 111 111
Q ss_pred EEEEEEecCCccceeeeecCCCCCceeEEEcCcCCCCCCCCceEEEeeEEEEEEecCCCcCCCeEEecCCCCCCCCCCcc
Q 019828 90 MKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTG 169 (335)
Q Consensus 90 ~~~~~~~~gpg~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~~~e~k~l~V~Ip~G~~~g~~i~~~g~G~~~~~~~~G 169 (335)
..+..++.++|+++.+| ...|..|++.+...+.+.+++.+..|+..+....+..+|.+..-..||
T Consensus 168 ~~~~~~~~~~g~~~~~q---------------~~~~~~~~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~g 232 (336)
T KOG0713|consen 168 LEMFTQQEGPGRFQMLQ---------------EAVCDECPNVKLVLEEDPLEVEFERGDADGPEEIFELEGEPHIDGVPG 232 (336)
T ss_pred hhheeeccCCChhhhhh---------------hhhhccCCccceeecCCceeeeeeecccCCceeeeeccCCcceecccC
Confidence 23456677888877766 356777777889999999999999999999999999999988888999
Q ss_pred cEEEEEEeecCCCcccccccceeeccCCHHHHhCCcEEEEecCCCcEEEEEeCCCccccCCcEEEEcCCCCCCCCCCCCC
Q 019828 170 DIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMR 249 (335)
Q Consensus 170 Dliv~i~~~~h~~F~R~g~dL~~~~~I~l~eAl~G~~~~i~~ldGr~l~v~ip~g~vi~~g~~~~i~geGmP~~~~~~~~ 249 (335)
|+++.+...+|+.|.|+++||++++.|+|.+||.|+...+.|||+..+.++.. .+..|+..++..++|||..++....
T Consensus 233 D~~f~~~~y~~~~~~~k~~~~~~n~~~sl~~~~v~~~~e~~~~d~~~~~~~r~--~~~~p~~~~~~~~~~~~~l~~~~~~ 310 (336)
T KOG0713|consen 233 DLFFKIVSYTHPRFERKGDDLYTNVTISLEAALVGFEMEILHLDGHYVEVSRK--KITWPGARTRKKGEGMPLLKNRNEK 310 (336)
T ss_pred CceeeeEEecccceecCccchhhHHHHHHHHHHHHHHHHhhccchhhhhhhhh--hccccchhhhhhhccchhhhccchh
Confidence 99999999999999999999999999999999999999999999987666544 4467899999999999987777789
Q ss_pred CceEEEEEEeCCCC-CCH
Q 019828 250 GKLYIHFTVDFPES-LSP 266 (335)
Q Consensus 250 GdL~i~f~V~fP~~-l~~ 266 (335)
|++|++|.+.||.+ ++.
T Consensus 311 ~~~~~t~~~~~~~~~~~~ 328 (336)
T KOG0713|consen 311 GNLYVTFDVEFPKSSLSD 328 (336)
T ss_pred cceeEEecccCcccccch
Confidence 99999999999966 555
No 36
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=8.7e-17 Score=152.12 Aligned_cols=171 Identities=26% Similarity=0.617 Sum_probs=145.4
Q ss_pred CCchhhhhhhcCCCCCCCCCCCCCCCCCCCceEEEEEeehhhhhcCceeEEeeeeeEecCCCCCCCccCCCc-ccCCCCC
Q 019828 8 HDPFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGAS-MKCSGCQ 86 (335)
Q Consensus 8 ~~~~diF~~fFgg~~~~~~~~~~~~~~~g~d~~~~l~vtLee~y~G~~~~i~~~r~~~C~~C~G~G~~~~~~-~~C~~C~ 86 (335)
+++.|+|..+|++. ..+.-.+.++.+.+.+.|+++-.|..+.+.+.....|.+|.|.|...+.. ..|..|.
T Consensus 117 g~~~~~~~~~~~~~--------~~~~~~~~~~~~d~~~~f~~A~~g~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 188 (288)
T KOG0715|consen 117 GNPFDVFLEFFGGK--------MNKRVPDKDQYYDLSLDFKEAVRGSKKRISFNVLSDCETCFGSGAEEGAKRESCKTCS 188 (288)
T ss_pred CCccchHHHhhccc--------ccccccCcccccccccCHHHHhhccccceEEEeecccccccCcCcccccccccchhhh
Confidence 36889999999740 11223456778889999999999999999999999999999999877765 6899999
Q ss_pred CccEEEEEEecCCccceeeeecCCCCCceeEEEcCcCCCCCCCCceEEEeeEEEEEEecCCCcCCCeEEecCCCCCCCCC
Q 019828 87 GSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAPDT 166 (335)
Q Consensus 87 G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~~~e~k~l~V~Ip~G~~~g~~i~~~g~G~~~~~~ 166 (335)
|+|.........+.+ + +|+.|+|.|.++. +.|..|.|.+.+...+.+.|.+|+|..++.+|++.+.+..
T Consensus 189 ~~~~~~~~~~~~f~~--~---~~~~c~~~~~~~~--~~c~~~~g~~~v~~~k~i~i~~~~g~~~~~~l~~~~~~~~---- 257 (288)
T KOG0715|consen 189 GRGLVSNPKEDPFIL--Y---TCSYCLGRGLVLR--DNCQACSGAGQVRRAKDIMIVLPAGVRSADTLRFAGHGND---- 257 (288)
T ss_pred CcccccccccCCcce--e---ecccccccceecc--chHHHhhcchhhhhheeEEeecCcccccccEEEEecCCcc----
Confidence 999655443443321 1 8999999999997 4499999999999999999999999999999999998864
Q ss_pred CcccEEEEEEeecCCCcccccccceeeccCCHHH
Q 019828 167 VTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTE 200 (335)
Q Consensus 167 ~~GDliv~i~~~~h~~F~R~g~dL~~~~~I~l~e 200 (335)
||++.|.|.+++.|+|+|.|+++.+.|++.+
T Consensus 258 ---~l~v~~~v~~~~~~~r~~~~i~~~~~i~~~~ 288 (288)
T KOG0715|consen 258 ---DLFVRLIVAKSPSFRREGKDILYDAIISFTQ 288 (288)
T ss_pred ---eEEEEEEeccCcccccccCcccccccccccC
Confidence 9999999999999999999999999998753
No 37
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=99.58 E-value=3.7e-15 Score=110.81 Aligned_cols=65 Identities=43% Similarity=0.947 Sum_probs=53.2
Q ss_pred cCCCCCCCccCCC-cccCCCCCCccEEEEEEecCCccceeeeecCCCCCceeEEEcCcCCCCCCCCce
Q 019828 66 CTKCKGKGSKSGA-SMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEK 132 (335)
Q Consensus 66 C~~C~G~G~~~~~-~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g 132 (335)
|++|+|+|++.+. ..+|+.|+|+|+++..++ .|+++++++++|+.|+|+|++| ++++|+.|+|+|
T Consensus 1 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~-~~~~~~~~~~~C~~C~G~G~~i-~~~~C~~C~G~g 66 (66)
T PF00684_consen 1 CPKCNGTGAKPGKKPKTCPQCNGSGQVTRRQQ-TPGGVFQMQQTCPKCGGTGKII-EKDPCKTCKGSG 66 (66)
T ss_dssp -CCCTTTSB-STTT-EE-TTSSSSSEEEEEEE-SSSTTEEEEEE-TTTSSSSEE--TSSB-SSSTTSS
T ss_pred CCcCCCcccCCCCCCcCCcCCCCeeEEEEEEe-CCCeEEEEEEECCCCcceeeEE-CCCCCCCCCCcC
Confidence 8999999997665 479999999999999888 7778899999999999999999 789999999975
No 38
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=3.4e-13 Score=130.31 Aligned_cols=175 Identities=25% Similarity=0.404 Sum_probs=112.3
Q ss_pred CchhhhhhhcCCCCCCCCCCCCCCCCCCCceEEEEEeehhhhhcCceeEEeeeeeEecCCCCCCCccCC----CcccCCC
Q 019828 9 DPFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSG----ASMKCSG 84 (335)
Q Consensus 9 ~~~diF~~fFgg~~~~~~~~~~~~~~~g~d~~~~l~vtLee~y~G~~~~i~~~r~~~C~~C~G~G~~~~----~~~~C~~ 84 (335)
++...|+++|+. +|+|+++ .++++..+..-..|.++|+ |++...+ .|.... ...+|+.
T Consensus 86 ~fgg~~~DIF~~-~FgGg~~-~~~~~~~~~rG~Dl~~~l~---------isleEa~-------~G~~~~i~~~~~~~C~~ 147 (371)
T COG0484 86 GFGGDFGDIFED-FFGGGGG-GRRRPNRPRRGADLRYNLE---------ITLEEAV-------FGVKKEIRVTRSVTCST 147 (371)
T ss_pred CCCCCHHHHHHH-hhcCCCc-ccCCCCCcccCCceEEEEE---------eEhhhhc-------cCceeeEecceeeECCc
Confidence 344358888875 3443333 3344445556666777766 4444332 232221 2358999
Q ss_pred CCCccEEEEEEecCCccceeeeecCCCCCceeEEEc--------CcCCCCCCCCceEEEeeEEEEEEecCCCcCCCeEEe
Q 019828 85 CQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETIN--------DKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITF 156 (335)
Q Consensus 85 C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~i~--------~~~~C~~C~G~g~~~e~k~l~V~Ip~G~~~g~~i~~ 156 (335)
|+|+|..-. ....+|++|+|+|.+.. ....|+.|+|+|.+.....- ..
T Consensus 148 C~GsGak~g----------t~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i~~pC~--------------~C 203 (371)
T COG0484 148 CHGSGAKPG----------TDPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKIIKDPCG--------------KC 203 (371)
T ss_pred CCCCCCCCC----------CCCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeECCCCCC--------------CC
Confidence 999997532 12478999999997543 34789999999877643221 12
Q ss_pred cCCCCCCCCCCcccEEEEEEeecCCCcccccccceeeccCCHHHHhCCcEEEEecCCCcEEEEEeCCCccccCCcEEEEc
Q 019828 157 PGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAIN 236 (335)
Q Consensus 157 ~g~G~~~~~~~~GDliv~i~~~~h~~F~R~g~dL~~~~~I~l~eAl~G~~~~i~~ldGr~l~v~ip~g~vi~~g~~~~i~ 236 (335)
.|.|. | .+.+.|.|+||+| +..|+.+++.
T Consensus 204 ~G~G~-----------------------------------------------v--~~~~~i~V~IPaG--v~~g~~ir~~ 232 (371)
T COG0484 204 KGKGR-----------------------------------------------V--KKKKSISVNIPAG--VDDGDRIRLS 232 (371)
T ss_pred CCCCe-----------------------------------------------E--eeeeEEEEECCCC--CccCCEEEEe
Confidence 22221 1 1245789999999 8999999999
Q ss_pred CCCCCCCCCCCCCCceEEEEEEeCCCCCC--------HHHHHHHHhhCC
Q 019828 237 DEGMPMYQRPFMRGKLYIHFTVDFPESLS--------PDQCKMLETVLP 277 (335)
Q Consensus 237 geGmP~~~~~~~~GdL~i~f~V~fP~~l~--------~~~~~~L~~~lp 277 (335)
|+|-... +....|||||.+.|+--+.+. ..-+..+.++|.
T Consensus 233 g~G~~g~-~Ggp~GDLyv~i~v~~h~~F~R~g~dL~~~~~Is~~~AalG 280 (371)
T COG0484 233 GEGEAGP-NGGPAGDLYVFVHVKPHPIFERDGDDLYCEVPISFTEAALG 280 (371)
T ss_pred cCcccCC-CCCCCccEEEEEEeecCCCeEECCCceEeccccCHHHHhcC
Confidence 9998776 355689999999998433322 223566677775
No 39
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.26 E-value=6.5e-12 Score=123.17 Aligned_cols=57 Identities=14% Similarity=0.173 Sum_probs=50.9
Q ss_pred EEEEEEecCCCcCCCeEEecCCCCCCC-CCCcccEEEEEEeecCCCcccccccceeec
Q 019828 138 KVLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVEH 194 (335)
Q Consensus 138 k~l~V~Ip~G~~~g~~i~~~g~G~~~~-~~~~GDliv~i~~~~h~~F~R~g~dL~~~~ 194 (335)
+.++|+||+|+++|++|+|+|+|++.+ +..+|||||+|+++.|+.|++++.+|+.++
T Consensus 303 ~~i~v~Ip~g~~~g~~iri~GkG~p~~~~~~~GDL~V~~~v~~P~~l~~~~~~ll~~l 360 (369)
T PRK14282 303 GTTMLKIPPGTQPETVFRLKGKGLPNMRYGRRGDLIVNVHVEIPKRLSREERKLLKEL 360 (369)
T ss_pred cEEEEEeCCCcCCCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999999999864 346899999999999999999999887664
No 40
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.20 E-value=1.8e-11 Score=119.88 Aligned_cols=130 Identities=22% Similarity=0.440 Sum_probs=92.1
Q ss_pred hhcCceeEEeeeeeEecCCCCCCCccC-----CC-----cccCCCCCCccEEEEEEecCCccceeeeecCCCCCceeEEE
Q 019828 50 LYNGTSKKLSLSRNVICTKCKGKGSKS-----GA-----SMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETI 119 (335)
Q Consensus 50 ~y~G~~~~i~~~r~~~C~~C~G~G~~~-----~~-----~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~i 119 (335)
.+.|....-. ....|+.|+|+|... +. ..+|+.|+|.|... ..+|+.|+|+|.+.
T Consensus 154 ~C~G~g~~~~--~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~-------------~~~C~~C~G~g~v~ 218 (365)
T PRK14290 154 DCSGTGAKNG--KLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIP-------------EEKCPRCNGTGTVV 218 (365)
T ss_pred CCccccCCCC--CCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEc-------------cCCCCCCCCceeEE
Confidence 4555554322 356899999999642 11 25799999999753 47899999997753
Q ss_pred cCc---------------------CCCCC-------------------------------------CCCceE-EEeeEEE
Q 019828 120 NDK---------------------DRCPQ-------------------------------------CKGEKV-IQEKKVL 140 (335)
Q Consensus 120 ~~~---------------------~~C~~-------------------------------------C~G~g~-~~e~k~l 140 (335)
..+ -.... |.+... ......+
T Consensus 219 ~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~GDL~v~v~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~~~~g~i 298 (365)
T PRK14290 219 VNEDISVKIPKGATDNLRLRVKGKGQSYGGRTGDLYVVLRVNNDPNIQRINDDLYVDQKINFPQAALGGEIEIKLFREKY 298 (365)
T ss_pred EeeEEEEEECCCCCCCcEEEEccccCCCCCCCCCEEEEEEEcCCCCEEEecCCEEEEEEeCHHHHhCCCEEEEEcCCceE
Confidence 211 00100 111111 1123568
Q ss_pred EEEecCCCcCCCeEEecCCCCCCCC-CCcccEEEEEEeecCCCcccccccceeec
Q 019828 141 EVIVEKGMQNGQKITFPGEADEAPD-TVTGDIVFVLQQKEHPKFKRKGDDLFVEH 194 (335)
Q Consensus 141 ~V~Ip~G~~~g~~i~~~g~G~~~~~-~~~GDliv~i~~~~h~~F~R~g~dL~~~~ 194 (335)
+|.||+|+++|++|+|+|+|++.++ ..+|||||+|++..|+.|++++.+|+.++
T Consensus 299 ~V~Ip~g~~~g~~iri~g~G~p~~~~~~~GDL~V~~~V~~P~~l~~~~~~ll~~~ 353 (365)
T PRK14290 299 NLKIPEGTQPGEVLKIKGAGMPHLNGHGSGDLLVRINVEVPKRLTSKQKELIREF 353 (365)
T ss_pred EEEECCccCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 9999999999999999999998654 36899999999999999999999988774
No 41
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.19 E-value=2.4e-11 Score=119.03 Aligned_cols=58 Identities=22% Similarity=0.354 Sum_probs=50.7
Q ss_pred EEEEEEecCCCcCCCeEEecCCCCCCCC-CCcccEEEEEEeecCCCcccccccceeecc
Q 019828 138 KVLEVIVEKGMQNGQKITFPGEADEAPD-TVTGDIVFVLQQKEHPKFKRKGDDLFVEHT 195 (335)
Q Consensus 138 k~l~V~Ip~G~~~g~~i~~~g~G~~~~~-~~~GDliv~i~~~~h~~F~R~g~dL~~~~~ 195 (335)
..++|.||+|+++|++|+|+|+|++.++ ..+|||||+|++..|+.|+++..+|+.++.
T Consensus 290 G~~~v~ip~g~~~g~~iri~G~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~~~ 348 (366)
T PRK14294 290 GERELKIPKGTQPGDIFRFKGKGIPSLRGGGRGDQIIEVEVKVPTRLTKKQEELLTEFA 348 (366)
T ss_pred CcEEEEECCCcCCCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHH
Confidence 3469999999999999999999998654 468999999999999999999888877643
No 42
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.17 E-value=3.2e-11 Score=118.10 Aligned_cols=131 Identities=23% Similarity=0.464 Sum_probs=90.0
Q ss_pred hhhcCceeEEeeeeeEecCCCCCCCccCC------CcccCCCCCCccEEEEEEecCCccceeeeecCCCCCceeEEEcCc
Q 019828 49 DLYNGTSKKLSLSRNVICTKCKGKGSKSG------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDK 122 (335)
Q Consensus 49 e~y~G~~~~i~~~r~~~C~~C~G~G~~~~------~~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~i~~~ 122 (335)
..++|...+- -.....|+.|+|+|.... ...+|+.|+|+|.++ ..+|..|+|+|.+...+
T Consensus 150 ~~C~G~G~~~-~~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~-------------~~~C~~C~G~g~v~~~~ 215 (365)
T PRK14285 150 ESCLGKKSEK-GTSPSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKII-------------SNPCKSCKGKGSLKKKE 215 (365)
T ss_pred CCCCCcccCC-CCCCccCCCccCceeEEecCceeEEeeecCCCCCccccc-------------CCCCCCCCCCCEEeccE
Confidence 3466665432 233467999999986431 125799999999754 36799999988653211
Q ss_pred CCC----------------------CC--------------------------------------CCCceEEE--eeEEE
Q 019828 123 DRC----------------------PQ--------------------------------------CKGEKVIQ--EKKVL 140 (335)
Q Consensus 123 ~~C----------------------~~--------------------------------------C~G~g~~~--e~k~l 140 (335)
..- .. +.+.-.+. ..+.+
T Consensus 216 ~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~dL~~~~~Isl~eAl~G~~~~i~tldG~~v 295 (365)
T PRK14285 216 TIELKIPAGIDDNQQIKMRGKGSVNPDNQQYGDLYIKILIKPHKIFKRNGKDLYATLPISFTQAALGKEIKIQTIASKKI 295 (365)
T ss_pred EEEEEECCCCCCCCEEEEeeccccCCCCCCCCCEEEEEEEecCCCeEEeccceEEEEecCHHHHhCCCEEEEECCCCCEE
Confidence 000 00 11111211 13579
Q ss_pred EEEecCCCcCCCeEEecCCCCCCCCC-CcccEEEEEEeecCCCcccccccceee
Q 019828 141 EVIVEKGMQNGQKITFPGEADEAPDT-VTGDIVFVLQQKEHPKFKRKGDDLFVE 193 (335)
Q Consensus 141 ~V~Ip~G~~~g~~i~~~g~G~~~~~~-~~GDliv~i~~~~h~~F~R~g~dL~~~ 193 (335)
+|+||+|+++|++|+|+|+|++.++. ..|||||+|+++.|+.|+++...|+-.
T Consensus 296 ~V~Ip~g~~~g~~irl~GkG~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~~l~~ 349 (365)
T PRK14285 296 KIKIPKGTENDEQIIIKNEGMPILHTEKFGNLILIIKIKTPKNLNSNAIKLLEN 349 (365)
T ss_pred EEEeCCCcCCCcEEEECCCCccCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 99999999999999999999987654 469999999999999999888666554
No 43
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.16 E-value=3.3e-11 Score=118.89 Aligned_cols=113 Identities=26% Similarity=0.474 Sum_probs=81.2
Q ss_pred ccCCCCCCccEEEEEEecCCccceeeeecCCCCCceeEEEcC----------cCCCCCCCCceEEEeeEEEEEEecCCCc
Q 019828 80 MKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETIND----------KDRCPQCKGEKVIQEKKVLEVIVEKGMQ 149 (335)
Q Consensus 80 ~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~i~~----------~~~C~~C~G~g~~~e~k~l~V~Ip~G~~ 149 (335)
..|+.|+|+|.... .....|+.|+|+|.+... ...|..|.|.|.+.....-
T Consensus 155 ~~C~~C~G~G~~~~----------~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~--------- 215 (386)
T PRK14289 155 VPCSHCHGTGAEGN----------NGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIKKKCK--------- 215 (386)
T ss_pred cccCCCCCCCCCCC----------CCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccccCcCCC---------
Confidence 57999999996421 123679999999987532 3579999999866432210
Q ss_pred CCCeEEecCCCCCCCCCCcccEEEEEEeecCCCcccccccceeeccCCHHHHhCCcEEEEecCCCcEEEEEeCCCccccC
Q 019828 150 NGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKP 229 (335)
Q Consensus 150 ~g~~i~~~g~G~~~~~~~~GDliv~i~~~~h~~F~R~g~dL~~~~~I~l~eAl~G~~~~i~~ldGr~l~v~ip~g~vi~~ 229 (335)
-|++.-.+.. .+.+.|+|||| +++
T Consensus 216 ----------------------------------------------------~C~G~g~v~~--~~~~~V~Ip~G--~~~ 239 (386)
T PRK14289 216 ----------------------------------------------------KCGGEGIVYG--EEVITVKIPAG--VAE 239 (386)
T ss_pred ----------------------------------------------------CCCCCcEEee--eEEEEEEeCCC--CCC
Confidence 1222222221 34688999999 899
Q ss_pred CcEEEEcCCCCCCCCCCCCCCceEEEEEEeCCCCCCHHH
Q 019828 230 DQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQ 268 (335)
Q Consensus 230 g~~~~i~geGmP~~~~~~~~GdL~i~f~V~fP~~l~~~~ 268 (335)
|++++|+|+|+|... ...+|||||+|+|..|+.+..+.
T Consensus 240 G~~i~l~g~G~~~~~-~~~~GDL~v~v~v~~~~~f~r~g 277 (386)
T PRK14289 240 GMQLSMNGKGNAGKH-GGVNGDLLVVIEEEPHPELIRDE 277 (386)
T ss_pred CCEEEEeccccCCCC-CCCCccEEEEEEEecCCcccccc
Confidence 999999999999643 34589999999999998876554
No 44
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.12 E-value=5.7e-11 Score=116.81 Aligned_cols=57 Identities=14% Similarity=0.175 Sum_probs=49.7
Q ss_pred EEEEEEecCCCcCCCeEEecCCCCCCCC-CCcccEEEEEEeecCCCcccccccceeec
Q 019828 138 KVLEVIVEKGMQNGQKITFPGEADEAPD-TVTGDIVFVLQQKEHPKFKRKGDDLFVEH 194 (335)
Q Consensus 138 k~l~V~Ip~G~~~g~~i~~~g~G~~~~~-~~~GDliv~i~~~~h~~F~R~g~dL~~~~ 194 (335)
..++|.||+|+++|++++++|+|.+.++ ...|||||+|++..++.|++++.+|+.++
T Consensus 291 G~i~v~ip~g~~~g~~lri~g~G~p~~~~~~~GDL~V~~~V~~P~~ls~~~~~ll~~l 348 (377)
T PRK14298 291 GKVKMNIPPGTQTHSVFRLKDKGMPRLHGHGKGDQLVKVIVKTPTKLTQEQKELLREF 348 (377)
T ss_pred CCEEEEeCCCcccCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 3479999999999999999999998643 45799999999999999999988877665
No 45
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.11 E-value=1e-10 Score=114.94 Aligned_cols=50 Identities=14% Similarity=0.327 Sum_probs=43.0
Q ss_pred EEEEEEecCCCcCCCeEEecCCCCCCCC-CCcccEEEEEEeecCCCccccc
Q 019828 138 KVLEVIVEKGMQNGQKITFPGEADEAPD-TVTGDIVFVLQQKEHPKFKRKG 187 (335)
Q Consensus 138 k~l~V~Ip~G~~~g~~i~~~g~G~~~~~-~~~GDliv~i~~~~h~~F~R~g 187 (335)
+.++|+||+|+++|++|+|+|+|++.++ ..+|||||+|+++.+..|+-+-
T Consensus 292 ~~i~v~Ip~g~~~g~~iri~g~G~p~~~~~~~GDL~V~~~v~~P~~ls~~q 342 (372)
T PRK14300 292 GKVNLTIPAGTQNGDQLRLRSKGMSKMRSTIRGDMLTHIHVEVPKNLSKRQ 342 (372)
T ss_pred CEEEEEECCccCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHH
Confidence 5799999999999999999999998653 5689999999999887654443
No 46
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.11 E-value=2.1e-10 Score=112.54 Aligned_cols=73 Identities=19% Similarity=0.232 Sum_probs=54.3
Q ss_pred HhCCcEEEEecCCCcEEEEEeCCCccccCCcEEEEcCCCCCCCCCCCCCCceEEEEEEeCCCCCCH--------HHHHHH
Q 019828 201 ALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSP--------DQCKML 272 (335)
Q Consensus 201 Al~G~~~~i~~ldGr~l~v~ip~g~vi~~g~~~~i~geGmP~~~~~~~~GdL~i~f~V~fP~~l~~--------~~~~~L 272 (335)
++|++...|. +.+.|.|.|||| +++|++++|+|+|+|... ....|||||+|+|.-.+.+.. -.+.+.
T Consensus 199 ~~C~G~g~v~--~~~~l~V~Ip~G--~~~G~~i~~~G~G~~~~~-~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~ 273 (371)
T PRK14287 199 ATCGGKGKVR--KRKKINVKVPAG--IDHGQQLRVSGQGEAGVN-GGPPGDLYVVFNVKPHEFFERDGDDIYCEMPLTFP 273 (371)
T ss_pred CCCCCeeEEe--eeEEEEEEECCc--CCCCCEEEEccCCcCCCC-CCCCccEEEEEEEecCCCEEEecCCeEEEEeccHH
Confidence 3677777775 367899999999 899999999999999753 346899999999975454332 235555
Q ss_pred HhhCCC
Q 019828 273 ETVLPP 278 (335)
Q Consensus 273 ~~~lp~ 278 (335)
+.++..
T Consensus 274 eAl~G~ 279 (371)
T PRK14287 274 QVALGD 279 (371)
T ss_pred HHhCCC
Confidence 666654
No 47
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.08 E-value=1.3e-10 Score=114.20 Aligned_cols=57 Identities=14% Similarity=0.303 Sum_probs=50.4
Q ss_pred EEEEEEecCCCcCCCeEEecCCCCCCC-CCCcccEEEEEEeecCCCcccccccceeec
Q 019828 138 KVLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVEH 194 (335)
Q Consensus 138 k~l~V~Ip~G~~~g~~i~~~g~G~~~~-~~~~GDliv~i~~~~h~~F~R~g~dL~~~~ 194 (335)
..++|.||+|+++|++++++|+|.+.+ +..+|||||.|++..++.|++++.+|+.++
T Consensus 288 G~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~v~~~v~~P~~l~~~~~~ll~~l 345 (371)
T PRK10767 288 GRVKLKIPEGTQTGKLFRLRGKGVKSVRSGARGDLYCQVVVETPVNLTKRQKELLEEF 345 (371)
T ss_pred CcEEEEeCCCCCCCCEEEECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 368999999999999999999999864 346799999999999999999998887765
No 48
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.06 E-value=1.9e-10 Score=112.27 Aligned_cols=55 Identities=13% Similarity=0.284 Sum_probs=46.7
Q ss_pred EEEEEEecCCCcCCCeEEecCCCCCCCC-CCcccEEEEEEeecCCCccccccccee
Q 019828 138 KVLEVIVEKGMQNGQKITFPGEADEAPD-TVTGDIVFVLQQKEHPKFKRKGDDLFV 192 (335)
Q Consensus 138 k~l~V~Ip~G~~~g~~i~~~g~G~~~~~-~~~GDliv~i~~~~h~~F~R~g~dL~~ 192 (335)
..++|.||+|+++|++++|+|+|++.++ ..+|||||.|++..++.|+++...|+-
T Consensus 293 G~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~i~~~v~~P~~l~~~~~~~l~ 348 (354)
T TIGR02349 293 GDVKLKIPAGTQSGTVFRLKGKGVPRLRGNGRGDLLVTVKVETPKNLSKEQKELLE 348 (354)
T ss_pred ceEEEEECCcccCCcEEEECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHH
Confidence 3689999999999999999999998654 368999999999999888877755543
No 49
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.06 E-value=2.9e-10 Score=111.79 Aligned_cols=51 Identities=22% Similarity=0.247 Sum_probs=43.4
Q ss_pred cEEEEEeCCCccccCCcEEEEcCCCCCCCCCCCCCCceEEEEEEeCCCCCCHHH
Q 019828 215 RQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQ 268 (335)
Q Consensus 215 r~l~v~ip~g~vi~~g~~~~i~geGmP~~~~~~~~GdL~i~f~V~fP~~l~~~~ 268 (335)
+.+.|+|||| +++|++++|+|+|+|..+ ...+|||||+|+|..|+.++.+.
T Consensus 216 ~~~~V~IppG--~~~G~~i~l~g~G~~~~~-~~~~GDL~v~v~v~~~~~f~r~g 266 (374)
T PRK14293 216 KKLKINIPAG--VDTGTRLRVSGEGDAGLR-GGPPGDLYVYLFVKNDPEFRRDG 266 (374)
T ss_pred eEEEEEeCCC--CCCCCEEEEccCccCCCC-CCCCcCEEEEEEEeCCCccChhh
Confidence 3578999999 899999999999998653 24579999999999999887665
No 50
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.05 E-value=2.3e-10 Score=113.09 Aligned_cols=122 Identities=23% Similarity=0.491 Sum_probs=83.2
Q ss_pred hhhcCceeEEeeeeeEecCCCCCCCccCC------CcccCCCCCCccEEEEEEecCCccceeeeecCCCCCceeEEEcCc
Q 019828 49 DLYNGTSKKLSLSRNVICTKCKGKGSKSG------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDK 122 (335)
Q Consensus 49 e~y~G~~~~i~~~r~~~C~~C~G~G~~~~------~~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~i~~~ 122 (335)
..++|...+-. ....+|+.|+|+|.... ...+|+.|+|+|.++ ..+|..|+|.|.+...+
T Consensus 177 ~~C~G~G~~~~-~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i-------------~~~C~~C~G~g~v~~~~ 242 (392)
T PRK14279 177 TTCHGSGARPG-TSPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSII-------------EDPCEECKGTGVTTRTR 242 (392)
T ss_pred CCCccccccCC-CCCCCCCCCcceEEEEEEecceEEEEecCCCCceeEEe-------------CCcCCCCCCCeEEEEee
Confidence 34566655432 23467999999996531 125899999999864 36799999988653211
Q ss_pred ----------------------CCCCC--------------------------------------CCCceEE-EeeEEEE
Q 019828 123 ----------------------DRCPQ--------------------------------------CKGEKVI-QEKKVLE 141 (335)
Q Consensus 123 ----------------------~~C~~--------------------------------------C~G~g~~-~e~k~l~ 141 (335)
+.=.. |.++..+ .-...++
T Consensus 243 ~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~~ldg~i~ 322 (392)
T PRK14279 243 TINVRIPPGVEDGQRIRLAGQGEAGLRGAPSGDLYVTVHVRPDKVFGRDGDDLTVTVPVSFTELALGSTLSVPTLDGPVG 322 (392)
T ss_pred eeEEEeCCCCCCCcEEEEeCCccCCCCCCCCCCEEEEEEEecCCcceeecCcEEEEEEccHHHHcCCceEEEEcCCceEE
Confidence 00000 1111111 1134589
Q ss_pred EEecCCCcCCCeEEecCCCCCCCCCCcccEEEEEEeecCCCcc
Q 019828 142 VIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFK 184 (335)
Q Consensus 142 V~Ip~G~~~g~~i~~~g~G~~~~~~~~GDliv~i~~~~h~~F~ 184 (335)
|+||+|+++|++|+|+|+|++.++..+|||||+|++.-+..+.
T Consensus 323 v~Ip~g~~~g~~iri~g~G~p~~~~~~GDL~I~~~v~~P~~Ls 365 (392)
T PRK14279 323 VKVPAGTADGRILRVRGRGVPKRSGGAGDLLVTVKVAVPPNLD 365 (392)
T ss_pred EEECCCCCCCCEEEECCCCCCCCCCCCCCEEEEEEEECCCCCC
Confidence 9999999999999999999987666789999999999776533
No 51
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.04 E-value=2.5e-10 Score=112.86 Aligned_cols=56 Identities=13% Similarity=0.290 Sum_probs=47.3
Q ss_pred EEEEEEecCCCcCCCeEEecCCCCCCCC-CCcccEEEEEEeecCCCcccccccceee
Q 019828 138 KVLEVIVEKGMQNGQKITFPGEADEAPD-TVTGDIVFVLQQKEHPKFKRKGDDLFVE 193 (335)
Q Consensus 138 k~l~V~Ip~G~~~g~~i~~~g~G~~~~~-~~~GDliv~i~~~~h~~F~R~g~dL~~~ 193 (335)
..++|+||+|+++|++|+|+|+|.+.++ ..+|||||+|++..+..++.+...|+..
T Consensus 306 ~~i~v~Ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~ 362 (391)
T PRK14284 306 GTCRLTIPEGIQSGTILKVRGQGFPNVHGKGRGDLLVRISVETPQNLSEEQKELLRQ 362 (391)
T ss_pred cEEEEEECCccCCCeEEEECCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHH
Confidence 6789999999999999999999998653 4689999999999988777766555444
No 52
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.02 E-value=4.8e-10 Score=110.34 Aligned_cols=122 Identities=25% Similarity=0.475 Sum_probs=81.7
Q ss_pred hhhcCceeEEeeeeeEecCCCCCCCccC-------CC---cccCCCCCCccEEEEEEecCCccceeeeecCCCCCceeEE
Q 019828 49 DLYNGTSKKLSLSRNVICTKCKGKGSKS-------GA---SMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGET 118 (335)
Q Consensus 49 e~y~G~~~~i~~~r~~~C~~C~G~G~~~-------~~---~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~ 118 (335)
+.++|...+-. .....|+.|+|+|... +. ..+|+.|+|+|.++ ..+|+.|+|+|.+
T Consensus 143 ~~C~G~G~~~~-~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------------~~~C~~C~G~g~v 208 (378)
T PRK14278 143 DRCHGKGTAGD-SKPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVI-------------PDPCHECAGDGRV 208 (378)
T ss_pred CCCcCccCCCC-CCceecCCccCceEEEEEEeccceeEEEEEECCCCCccceee-------------CCCCCCCCCceeE
Confidence 34566554322 2346799999999642 11 24799999999764 3679999998865
Q ss_pred EcCc----------------------CCCC--------------------------------------CCCCceEEE--e
Q 019828 119 INDK----------------------DRCP--------------------------------------QCKGEKVIQ--E 136 (335)
Q Consensus 119 i~~~----------------------~~C~--------------------------------------~C~G~g~~~--e 136 (335)
...+ +.-. -|.++..+. .
T Consensus 209 ~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tld 288 (378)
T PRK14278 209 RARREITVKIPAGVGDGMRIRLAAQGEVGPGGGPAGDLYVEVHEQPHDVFVRDGDDLHCTVSVPMVDAALGTTVTVEAIL 288 (378)
T ss_pred ecceEEEEEECCCCCCCcEEEEccCcCCCCCCCCCCCEEEEEEECcCCCEEEcCCCEEEEEecCHHHHhcCCeEEEecCC
Confidence 3211 0000 011222222 1
Q ss_pred eEEEEEEecCCCcCCCeEEecCCCCCCC-CCCcccEEEEEEeecCCCcc
Q 019828 137 KKVLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFK 184 (335)
Q Consensus 137 ~k~l~V~Ip~G~~~g~~i~~~g~G~~~~-~~~~GDliv~i~~~~h~~F~ 184 (335)
...++|.||+|+++|++++++|+|.+.+ +..+|||||+|++.-+..+.
T Consensus 289 ~~~i~v~ip~g~~~g~~lrl~g~G~p~~~~~~~GDL~V~~~V~~P~~Ls 337 (378)
T PRK14278 289 DGPSEITIPPGTQPGSVITLRGRGMPHLRSGGRGDLHAHVEVVVPTRLD 337 (378)
T ss_pred CCeEEEEeCCCcCCCcEEEECCCCCCCCCCCCCCCEEEEEEEEcCCCCC
Confidence 4678999999999999999999999864 34589999999999665433
No 53
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.01 E-value=3.5e-10 Score=111.10 Aligned_cols=56 Identities=18% Similarity=0.337 Sum_probs=46.3
Q ss_pred EEEEEEecCCCcCCCeEEecCCCCCCCC-CCcccEEEEEEeecCCCcccccccceee
Q 019828 138 KVLEVIVEKGMQNGQKITFPGEADEAPD-TVTGDIVFVLQQKEHPKFKRKGDDLFVE 193 (335)
Q Consensus 138 k~l~V~Ip~G~~~g~~i~~~g~G~~~~~-~~~GDliv~i~~~~h~~F~R~g~dL~~~ 193 (335)
..++|+||+|+++|++|+|+|+|.+.++ ..+|||||+|++..|..++.+..+|+.+
T Consensus 290 G~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~I~~~V~~P~~l~~~q~~~l~~ 346 (373)
T PRK14301 290 DPVTLDIPKGTQSGEVFRLRGKGLPYLGSSQKGDLLVEVSVVTPTKLTKRQEELLRE 346 (373)
T ss_pred ccEEEEECCCcCCCcEEEEcCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 3489999999999999999999998654 4589999999999888776665555443
No 54
>PRK14295 chaperone protein DnaJ; Provisional
Probab=98.99 E-value=6.9e-10 Score=109.62 Aligned_cols=122 Identities=23% Similarity=0.466 Sum_probs=82.6
Q ss_pred hhhcCceeEEeeeeeEecCCCCCCCccCC------CcccCCCCCCccEEEEEEecCCccceeeeecCCCCCceeEEEcCc
Q 019828 49 DLYNGTSKKLSLSRNVICTKCKGKGSKSG------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDK 122 (335)
Q Consensus 49 e~y~G~~~~i~~~r~~~C~~C~G~G~~~~------~~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~i~~~ 122 (335)
..++|...+-. .....|+.|+|+|.... ...+|+.|+|+|.++ ..+|..|.|.|.+...+
T Consensus 170 ~~C~G~G~~~~-~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-------------~~~C~~C~G~g~~~~~~ 235 (389)
T PRK14295 170 PACSGTGAKNG-TTPRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIA-------------DDPCLVCKGSGRAKSSR 235 (389)
T ss_pred CCCcccccCCC-CCCcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEe-------------ccCCCCCCCCceEeeee
Confidence 44566555422 33467999999986421 125799999999764 36799999987653211
Q ss_pred ----------------------CCCCC--------------------------------------CCCceEE--EeeEEE
Q 019828 123 ----------------------DRCPQ--------------------------------------CKGEKVI--QEKKVL 140 (335)
Q Consensus 123 ----------------------~~C~~--------------------------------------C~G~g~~--~e~k~l 140 (335)
+.... +.+...+ ...+.+
T Consensus 236 ~l~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~tldG~~~ 315 (389)
T PRK14295 236 TMQVRIPAGVSDGQRIRLRGKGAPGERGGPAGDLYVVVHVDPHPVFGRSGDNLTVTVPVTFPEAALGAEVRVPTLGGPPV 315 (389)
T ss_pred EEEEEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEecCCCEEEecCCEEEEEeecHHHHhCCCeEEEECCCCCEE
Confidence 11111 1111122 113579
Q ss_pred EEEecCCCcCCCeEEecCCCCCCCCCCcccEEEEEEeecCCCcc
Q 019828 141 EVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFK 184 (335)
Q Consensus 141 ~V~Ip~G~~~g~~i~~~g~G~~~~~~~~GDliv~i~~~~h~~F~ 184 (335)
+|+||+|+++|++|+|+|+|.+..+..+|||||+|++.-+....
T Consensus 316 ~v~ip~g~~~g~~iri~G~G~p~~~~~~GDL~i~~~v~~P~~Ls 359 (389)
T PRK14295 316 TVKLPPGTPNGRVLRVRGKGAVRKDGTRGDLLVTVEVAVPKDLS 359 (389)
T ss_pred EEEECCccCCCcEEEECCCCcCCCCCCCCCEEEEEEEECCCCCC
Confidence 99999999999999999999986566689999999999775433
No 55
>PRK14297 chaperone protein DnaJ; Provisional
Probab=98.97 E-value=1.5e-09 Score=106.89 Aligned_cols=109 Identities=22% Similarity=0.450 Sum_probs=77.7
Q ss_pred ccCCCCCCccEEEEEEecCCccceeeeecCCCCCceeEEE----------cCcCCCCCCCCceEEEeeEEEEEEecCCCc
Q 019828 80 MKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETI----------NDKDRCPQCKGEKVIQEKKVLEVIVEKGMQ 149 (335)
Q Consensus 80 ~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~i----------~~~~~C~~C~G~g~~~e~k~l~V~Ip~G~~ 149 (335)
..|+.|+|+|... ++ ...+|+.|+|+|.+. .....|..|+|+|.+......
T Consensus 149 ~~C~~C~G~G~~~-------~~---~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~--------- 209 (380)
T PRK14297 149 ENCETCNGTGAKP-------GT---SPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIEDPCN--------- 209 (380)
T ss_pred ccCCCcccccccC-------CC---cCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcCCCCC---------
Confidence 5799999999742 22 246799999999764 235689999999876432111
Q ss_pred CCCeEEecCCCCCCCCCCcccEEEEEEeecCCCcccccccceeeccCCHHHHhCCcEEEEecCCCcEEEEEeCCCccccC
Q 019828 150 NGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKP 229 (335)
Q Consensus 150 ~g~~i~~~g~G~~~~~~~~GDliv~i~~~~h~~F~R~g~dL~~~~~I~l~eAl~G~~~~i~~ldGr~l~v~ip~g~vi~~ 229 (335)
...| .-.++ ..+.|.|.|||| +++
T Consensus 210 -----~C~G-----------------------------------------------~g~v~--~~~~i~V~Ip~G--~~~ 233 (380)
T PRK14297 210 -----KCHG-----------------------------------------------KGKVR--KNRKIKVNVPAG--VDT 233 (380)
T ss_pred -----CCCC-----------------------------------------------CeEEE--eEeEEEEEeCCC--CCC
Confidence 1111 11121 134688999999 899
Q ss_pred CcEEEEcCCCCCCCCCCCCCCceEEEEEEeCCCCC
Q 019828 230 DQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESL 264 (335)
Q Consensus 230 g~~~~i~geGmP~~~~~~~~GdL~i~f~V~fP~~l 264 (335)
|++++++|+|++... ....|||||+|+|..++.+
T Consensus 234 G~~I~l~g~G~~~~~-~~~~GDL~v~v~v~~h~~f 267 (380)
T PRK14297 234 GNVIPLRGQGEHGKN-GGPTGDLYINIRVAPHKTF 267 (380)
T ss_pred CcEEEEecCccCCCC-CCCCccEEEEEEEcCCCCE
Confidence 999999999998542 3357999999999987765
No 56
>PRK14288 chaperone protein DnaJ; Provisional
Probab=98.95 E-value=1.1e-09 Score=107.42 Aligned_cols=126 Identities=22% Similarity=0.493 Sum_probs=85.8
Q ss_pred hhhcCceeEEeeeeeEecCCCCCCCccC---CC---cccCCCCCCccEEEEEEecCCccceeeeecCCCCCceeEEEcCc
Q 019828 49 DLYNGTSKKLSLSRNVICTKCKGKGSKS---GA---SMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDK 122 (335)
Q Consensus 49 e~y~G~~~~i~~~r~~~C~~C~G~G~~~---~~---~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~i~~~ 122 (335)
+.++|...+-. ....|+.|+|+|... +. ..+|+.|+|+|..+ ..+|+.|+|.|.+...+
T Consensus 144 ~~C~G~G~~~~--~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-------------~~~C~~C~G~g~v~~~~ 208 (369)
T PRK14288 144 ESCDGTGAKDK--ALETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKII-------------KTPCQACKGKTYILKDE 208 (369)
T ss_pred CCCCCcccCCC--CCcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEc-------------cccCccCCCcceEEEEE
Confidence 44566655432 456899999999642 11 24799999999864 36799999987653211
Q ss_pred ----------------------CCCCC-------------------------------------CCCceEEE--eeEEEE
Q 019828 123 ----------------------DRCPQ-------------------------------------CKGEKVIQ--EKKVLE 141 (335)
Q Consensus 123 ----------------------~~C~~-------------------------------------C~G~g~~~--e~k~l~ 141 (335)
+.=.. |.+.-.+. +.+.++
T Consensus 209 ~l~V~IP~G~~~G~~i~l~g~G~~~~~~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~v~tLdG~~l~ 288 (369)
T PRK14288 209 EIDAIIPEGIDDQNRMVLKNKGNEYEKGKRGDLYLEARVKEDEHFKREGCDLFIEAPVFFTTIALGHTIKVPSLKGDELE 288 (369)
T ss_pred EEEEecCCCCCCCCEEEEccCccCCCCCCCCCEEEEEEEEECCCcEEeCCEEEEEEecCHHHHhcCCEEEeecCCCCEEE
Confidence 10000 11111111 124689
Q ss_pred EEecCCCcCCCeEEecCCCCCCCCC-CcccEEEEEEeecCCCccccccc
Q 019828 142 VIVEKGMQNGQKITFPGEADEAPDT-VTGDIVFVLQQKEHPKFKRKGDD 189 (335)
Q Consensus 142 V~Ip~G~~~g~~i~~~g~G~~~~~~-~~GDliv~i~~~~h~~F~R~g~d 189 (335)
|+||+|+++|+.++++|+|.+.++. ..|||||.|+++.|..|..+...
T Consensus 289 i~i~~~~~~g~~~~i~g~G~p~~~~~~~GDL~v~~~v~~P~~ls~~q~~ 337 (369)
T PRK14288 289 LKIPRNARDRQTFAFRNEGVKHPESSYRGSLIVELQVIYPKSLNKEQQE 337 (369)
T ss_pred EEeCCCCCCCcEEEEcCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHH
Confidence 9999999999999999999987654 46999999999988876655433
No 57
>PRK14296 chaperone protein DnaJ; Provisional
Probab=98.94 E-value=2.4e-09 Score=105.23 Aligned_cols=62 Identities=15% Similarity=0.288 Sum_probs=46.4
Q ss_pred cEEEEEeCCCccccCCcEEEEcCCCCCCCCCCCCCCceEEEEEEeCCCCCCH---------HHHHHHHhhCCCC
Q 019828 215 RQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSP---------DQCKMLETVLPPR 279 (335)
Q Consensus 215 r~l~v~ip~g~vi~~g~~~~i~geGmP~~~~~~~~GdL~i~f~V~fP~~l~~---------~~~~~L~~~lp~~ 279 (335)
+.+.|.|||| +++|++++++|+|++... ....|||||+|+|.-.+.+.. ..+.+.+.||...
T Consensus 222 ~~~~V~Ip~G--~~~G~~i~~~g~G~~~~~-~~~~GDL~v~v~v~~h~~F~R~~G~DL~~~~~Isl~eAllG~~ 292 (372)
T PRK14296 222 KKIEVNIPKG--IRPNQQIKLSQKGHASLN-NGVNGDLIIDIYLKESKVFEIINNNDILMTYNISYLDAILGNE 292 (372)
T ss_pred EEEEEEECCC--CCCCCEEEEeccccCCCC-CCCCccEEEEEEEeCCCCEEEeCCCcEEEEEecCHHHHhCCCE
Confidence 4688999999 899999999999998642 345899999999984333432 1356667777644
No 58
>PRK14286 chaperone protein DnaJ; Provisional
Probab=98.93 E-value=2.4e-09 Score=105.18 Aligned_cols=107 Identities=26% Similarity=0.473 Sum_probs=75.1
Q ss_pred ccCCCCCCccEEEEEEecCCccceeeeecCCCCCceeEEEc------CcCCCCCCCCceEEEeeEEEEEEecCCCcCCCe
Q 019828 80 MKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETIN------DKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQK 153 (335)
Q Consensus 80 ~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~i~------~~~~C~~C~G~g~~~e~k~l~V~Ip~G~~~g~~ 153 (335)
..|+.|+|+|.... ....+|+.|+|+|.+.. ....|..|.|.|.+.....-
T Consensus 151 ~~C~~C~G~G~~~~----------~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~~~C~------------- 207 (372)
T PRK14286 151 ESCVDCNGSGASKG----------SSPTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVISNPCK------------- 207 (372)
T ss_pred ccCCCCcCCCcCCC----------CCCccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEecccCC-------------
Confidence 57999999997421 11267999999997642 34589999999876432110
Q ss_pred EEecCCCCCCCCCCcccEEEEEEeecCCCcccccccceeeccCCHHHHhCCcEEEEecCCCcEEEEEeCCCccccCCcEE
Q 019828 154 ITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFK 233 (335)
Q Consensus 154 i~~~g~G~~~~~~~~GDliv~i~~~~h~~F~R~g~dL~~~~~I~l~eAl~G~~~~i~~ldGr~l~v~ip~g~vi~~g~~~ 233 (335)
...| .-.+.. -+.|.|.|||| +++|+.+
T Consensus 208 -~C~G-----------------------------------------------~g~~~~--~~~l~V~Ip~G--~~~G~~i 235 (372)
T PRK14286 208 -TCGG-----------------------------------------------QGLQEK--RRTINIKIPPG--VETGSRL 235 (372)
T ss_pred -CCCC-----------------------------------------------CcEEec--ceEEEEEECCC--CCCCCEE
Confidence 1112 112221 34689999999 8999999
Q ss_pred EEcCCCCCCCCCCCCCCceEEEEEEeCCC
Q 019828 234 AINDEGMPMYQRPFMRGKLYIHFTVDFPE 262 (335)
Q Consensus 234 ~i~geGmP~~~~~~~~GdL~i~f~V~fP~ 262 (335)
+|+|+|+|..+ ...+|||||+|+|.-.+
T Consensus 236 ~~~g~G~~~~~-~~~~GDL~i~i~v~~h~ 263 (372)
T PRK14286 236 KVSGEGEAGPN-GGPHGDLYVVTHIKKHE 263 (372)
T ss_pred EECCccccCCC-CCCCceEEEEEEEccCC
Confidence 99999999763 34679999999997333
No 59
>PRK14276 chaperone protein DnaJ; Provisional
Probab=98.93 E-value=2.1e-09 Score=105.90 Aligned_cols=61 Identities=18% Similarity=0.273 Sum_probs=45.8
Q ss_pred cEEEEEeCCCccccCCcEEEEcCCCCCCCCCCCCCCceEEEEEEeCCCCCCH--------HHHHHHHhhCCC
Q 019828 215 RQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSP--------DQCKMLETVLPP 278 (335)
Q Consensus 215 r~l~v~ip~g~vi~~g~~~~i~geGmP~~~~~~~~GdL~i~f~V~fP~~l~~--------~~~~~L~~~lp~ 278 (335)
+.|.|.|||| +++|+.++|+|+|+|... ...+|||||+|+|.-.+.+.. -.+.+.+.++..
T Consensus 219 ~~l~V~Ip~G--~~~G~~i~l~G~G~~~~~-~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~ 287 (380)
T PRK14276 219 HTVSVKIPAG--VETGQQIRLQGQGEAGFN-GGPYGDLYVVFRVEPSKKFERDGSTIYYTLPISFVQAALGD 287 (380)
T ss_pred EEEEEEeCCC--ccCCcEEEEeccccCCCC-CCCCcCEEEEEEEEECcceeeecceEEEEEecCHHHHhCCC
Confidence 4688999999 899999999999999763 346799999999985554432 134555555543
No 60
>PRK14299 chaperone protein DnaJ; Provisional
Probab=98.91 E-value=3.6e-09 Score=100.66 Aligned_cols=87 Identities=26% Similarity=0.338 Sum_probs=72.6
Q ss_pred cccccccceeeccCCHHHHhCCcEEEEecCCCcEEEEEeCCCccccCCcEEEEcCCCCCCCCCCCCCCceEEEEEEeCCC
Q 019828 183 FKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPE 262 (335)
Q Consensus 183 F~R~g~dL~~~~~I~l~eAl~G~~~~i~~ldGr~l~v~ip~g~vi~~g~~~~i~geGmP~~~~~~~~GdL~i~f~V~fP~ 262 (335)
+.|+|.||++++.|||.||++|+++.| +++++.+.|+|||| +++|++++++|+|++. |||||+|+|+-++
T Consensus 125 ~~~~g~dl~~~l~isL~ea~~G~~~~i-~l~g~~~~V~Ip~G--~~~G~~ir~~g~G~~~-------GDL~v~i~v~~h~ 194 (291)
T PRK14299 125 RARKGRDLEAELPLTLEEAYRGGEKVV-EVAGERLSVRIPPG--VREGQVIRLAGKGRQG-------GDLYLVVRLLPHP 194 (291)
T ss_pred CCCCCCCEEEEEEecHHHHhCCCeEEE-eeCCEEEEEecCCC--cCCCcEEEECCCCCCC-------CCEEEEEEEcCCC
Confidence 468899999999999999999999998 68998899999999 8999999999999862 9999999998655
Q ss_pred CCC--------HHHHHHHHhhCCCC
Q 019828 263 SLS--------PDQCKMLETVLPPR 279 (335)
Q Consensus 263 ~l~--------~~~~~~L~~~lp~~ 279 (335)
.+. .-.+.+.+.++...
T Consensus 195 ~f~R~G~DL~~~~~Isl~eAl~G~~ 219 (291)
T PRK14299 195 VFRLEGDDLYATVDVPAPIAVVGGK 219 (291)
T ss_pred CeEEECCEEEEEEecCHHHHhCCCE
Confidence 533 22355566666543
No 61
>PRK14280 chaperone protein DnaJ; Provisional
Probab=98.91 E-value=3.3e-09 Score=104.40 Aligned_cols=61 Identities=23% Similarity=0.271 Sum_probs=45.1
Q ss_pred cEEEEEeCCCccccCCcEEEEcCCCCCCCCCCCCCCceEEEEEEeCCCCCC--------HHHHHHHHhhCCC
Q 019828 215 RQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLS--------PDQCKMLETVLPP 278 (335)
Q Consensus 215 r~l~v~ip~g~vi~~g~~~~i~geGmP~~~~~~~~GdL~i~f~V~fP~~l~--------~~~~~~L~~~lp~ 278 (335)
+.|.|.||+| +++|++++++|+|+|... ...+|||||+|+|.-.+.+. ...+.+.+.++..
T Consensus 216 ~~i~V~Ip~G--~~~G~~i~l~G~G~~~~~-~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~ 284 (376)
T PRK14280 216 KKINVKIPAG--VDNGQQIRVSGEGEPGVN-GGPAGDLYVVFRVRPHEFFERDGDDIYCEMPLTFAQAALGD 284 (376)
T ss_pred EEEEEEeCCC--CcCCcEEEEcccccCCCC-CCCCcCEEEEEEEecCCCeEEecCCEEEEEecCHHHHhCCC
Confidence 4688999999 899999999999999753 35689999999998434332 2234555555543
No 62
>PRK14292 chaperone protein DnaJ; Provisional
Probab=98.90 E-value=2.5e-09 Score=105.07 Aligned_cols=50 Identities=16% Similarity=0.228 Sum_probs=42.0
Q ss_pred CCcEEEEEeCCCccccCCcEEEEcCCCCCCCCCCCCCCceEEEEEEeCCCCCCHH
Q 019828 213 DGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPD 267 (335)
Q Consensus 213 dGr~l~v~ip~g~vi~~g~~~~i~geGmP~~~~~~~~GdL~i~f~V~fP~~l~~~ 267 (335)
+.+.+.|.||+| +++|++++++|+|++... ..|||||+|+|..++.++.+
T Consensus 211 ~~~~~~V~Ip~G--~~~G~~i~~~G~G~~~~~---~~GDL~v~i~v~~h~~f~r~ 260 (371)
T PRK14292 211 KAETVKVKLPRG--IDEGYRIRVAGMGNEGPG---GNGDLYVHIEMEPHPELRRE 260 (371)
T ss_pred ecceEEEEECCC--CCCCcEEEEecCcCCCCC---CCCCEEEEEEEecCCccccc
Confidence 356789999999 899999999999998542 24999999999988887644
No 63
>PRK14277 chaperone protein DnaJ; Provisional
Probab=98.90 E-value=3e-09 Score=105.02 Aligned_cols=46 Identities=24% Similarity=0.352 Sum_probs=37.9
Q ss_pred CcEEEEEeCCCccccCCcEEEEcCCCCCCCCCCCCCCceEEEEEEeCCC
Q 019828 214 GRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPE 262 (335)
Q Consensus 214 Gr~l~v~ip~g~vi~~g~~~~i~geGmP~~~~~~~~GdL~i~f~V~fP~ 262 (335)
.+.|.|.|||| +++|++++|+|+|+|... ...+|||||+|+|+-.+
T Consensus 227 ~~~l~V~Ip~G--~~~G~~i~~~g~G~~~~~-~~~~GDL~v~i~v~~h~ 272 (386)
T PRK14277 227 RRKIKVNIPAG--IDDGQMITLRGEGEPGIK-GGPNGDLYIVIKVKPHP 272 (386)
T ss_pred eeEEEEecCCC--ccCCcEEEEccccccCCC-CCCCccEEEEEEEecCC
Confidence 34688999999 899999999999999643 34579999999998433
No 64
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=98.90 E-value=2.9e-09 Score=86.65 Aligned_cols=60 Identities=28% Similarity=0.655 Sum_probs=50.3
Q ss_pred eEecCCCCCCCccCCCcccCCCCCCccEEEEEEecCCccceeeeecCCCCCceeEEEcCcCCCCCCCCceEEEe
Q 019828 63 NVICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQE 136 (335)
Q Consensus 63 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~~~e 136 (335)
.++|..|+|+|.. +|+.|+|+|.+...+ ++ +++.+.+|+.|+|+|+. .|+.|+|++++..
T Consensus 41 ~v~C~~C~GsG~~-----~C~~C~G~G~v~~~~--~g--~~q~~~~C~~C~G~Gk~-----~C~~C~G~G~~~~ 100 (111)
T PLN03165 41 TQPCFPCSGTGAQ-----VCRFCVGSGNVTVEL--GG--GEKEVSKCINCDGAGSL-----TCTTCQGSGIQPR 100 (111)
T ss_pred CCCCCCCCCCCCc-----CCCCCcCcCeEEEEe--CC--cEEEEEECCCCCCccee-----eCCCCCCCEEEee
Confidence 5789999999973 899999999887543 33 36778999999999974 4999999998876
No 65
>PRK14283 chaperone protein DnaJ; Provisional
Probab=98.90 E-value=3.8e-09 Score=104.06 Aligned_cols=48 Identities=19% Similarity=0.207 Sum_probs=41.0
Q ss_pred CcEEEEEeCCCccccCCcEEEEcCCCCCCCCCCCCCCceEEEEEEeCCCCC
Q 019828 214 GRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESL 264 (335)
Q Consensus 214 Gr~l~v~ip~g~vi~~g~~~~i~geGmP~~~~~~~~GdL~i~f~V~fP~~l 264 (335)
.+.+.|.|||| +++|++++++|+|||... ...+|||||+|+|.-++.+
T Consensus 218 ~~~l~V~IppG--~~~G~~i~l~g~G~~~~~-~~~~GDLiv~i~v~~~~~f 265 (378)
T PRK14283 218 TKTISVKIPAG--VETGSRLRVSGEGEMGDR-GGEPGDLYVVIKVKPHKIF 265 (378)
T ss_pred ceeEEEEECCC--CCCCcEEEEeccccCCCC-CCCCccEEEEEEEEcCCCE
Confidence 34688999999 899999999999999764 3568999999999877764
No 66
>PRK14281 chaperone protein DnaJ; Provisional
Probab=98.89 E-value=2.2e-09 Score=106.39 Aligned_cols=121 Identities=20% Similarity=0.368 Sum_probs=81.1
Q ss_pred hhhcCceeEEeeeeeEecCCCCCCCccCC-------C---cccCCCCCCccEEEEEEecCCccceeeeecCCCCCceeEE
Q 019828 49 DLYNGTSKKLSLSRNVICTKCKGKGSKSG-------A---SMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGET 118 (335)
Q Consensus 49 e~y~G~~~~i~~~r~~~C~~C~G~G~~~~-------~---~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~ 118 (335)
..++|...+-. ....|+.|+|+|.... . ..+|+.|+|+|.++ ..+|+.|+|.|.+
T Consensus 167 ~~C~G~G~~~~--~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------------~~~C~~C~G~g~v 231 (397)
T PRK14281 167 KECNGTGSKTG--ATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVV-------------KDRCPACYGEGIK 231 (397)
T ss_pred CCCCCcccCCC--CCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeee-------------CCCCCCCCCCccE
Confidence 34566555432 3568999999996421 1 24799999999764 3679999998775
Q ss_pred EcCc----------------------CCCCC--------------------------------------CCCceEEE-ee
Q 019828 119 INDK----------------------DRCPQ--------------------------------------CKGEKVIQ-EK 137 (335)
Q Consensus 119 i~~~----------------------~~C~~--------------------------------------C~G~g~~~-e~ 137 (335)
...+ +.-.. +.+...+. -.
T Consensus 232 ~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tld 311 (397)
T PRK14281 232 QGEVTVKVTVPAGVQDGNYLTLRGQGNAGPRGGAPGDLIVVIEEKPHELFVRNGDDVIYNLAVSYPDLVLGTKVEVPTLD 311 (397)
T ss_pred ecceEEEEecCCCCCCCCEEEEecccccCCCCCCCCcEEEEEEEcCCCCeEEecCCEEEEEEecHHHHhcCCeEEeecCC
Confidence 3211 00000 11111222 13
Q ss_pred EEEEEEecCCCcCCCeEEecCCCCCCCC-CCcccEEEEEEeecCCCcc
Q 019828 138 KVLEVIVEKGMQNGQKITFPGEADEAPD-TVTGDIVFVLQQKEHPKFK 184 (335)
Q Consensus 138 k~l~V~Ip~G~~~g~~i~~~g~G~~~~~-~~~GDliv~i~~~~h~~F~ 184 (335)
..++|.||+|+++|++++++|+|.+.++ ...|||||+|++.-+..++
T Consensus 312 g~i~v~ip~g~~~G~~~ri~g~G~P~~~~~~~GDL~V~~~V~~P~~Ls 359 (397)
T PRK14281 312 GAVKLTIPAGTQPETMLRIPGKGIGHLRGSGRGDQYVRVNVFVPKEVS 359 (397)
T ss_pred ccEEEEeCCccCCCcEEEEcCCCCCCCCCCCCCCEEEEEEEEcCCCCC
Confidence 4489999999999999999999998643 4579999999999665433
No 67
>PRK14291 chaperone protein DnaJ; Provisional
Probab=98.79 E-value=1.2e-08 Score=100.62 Aligned_cols=44 Identities=25% Similarity=0.351 Sum_probs=38.7
Q ss_pred EEEEEEecCCCcCCCeEEecCCCCCCCC-CCcccEEEEEEeecCC
Q 019828 138 KVLEVIVEKGMQNGQKITFPGEADEAPD-TVTGDIVFVLQQKEHP 181 (335)
Q Consensus 138 k~l~V~Ip~G~~~g~~i~~~g~G~~~~~-~~~GDliv~i~~~~h~ 181 (335)
+.++|.||+|+++|++|+|+|+|++.++ ..+|||||+|++.-+.
T Consensus 302 ~~l~V~Ip~g~~~G~~i~i~G~G~p~~~~~~~GDL~V~~~V~~P~ 346 (382)
T PRK14291 302 KKEKVKIPPGTKEGDKIRVPGKGMPRLKGSGYGDLVVRVHIDVPK 346 (382)
T ss_pred CEEEEEECCccCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEeCC
Confidence 5689999999999999999999998654 4689999999998664
No 68
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=98.78 E-value=9.2e-09 Score=102.45 Aligned_cols=43 Identities=14% Similarity=0.117 Sum_probs=37.5
Q ss_pred EEEEEEecCC--CcCCCeEEecCCCCCCCC--CCcccEEEEEEeecC
Q 019828 138 KVLEVIVEKG--MQNGQKITFPGEADEAPD--TVTGDIVFVLQQKEH 180 (335)
Q Consensus 138 k~l~V~Ip~G--~~~g~~i~~~g~G~~~~~--~~~GDliv~i~~~~h 180 (335)
+.|+|+||+| +++|++++++|+|.+..+ ...|||||+|++.-+
T Consensus 301 ~~l~I~ip~g~vt~pg~~~~I~geGmP~~~~~~~rGDL~V~~~V~~P 347 (421)
T PTZ00037 301 RKLLVNTPPGEVVKPGDIKVINNEGMPTYKSPFKKGNLYVTFEVIFP 347 (421)
T ss_pred CeEEEEeCCCcccCCCcEEEeCCCCcccCCCCCCCCCEEEEEEEEcC
Confidence 5689999999 999999999999998543 357999999999866
No 69
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=98.74 E-value=2.8e-08 Score=95.22 Aligned_cols=75 Identities=24% Similarity=0.367 Sum_probs=63.1
Q ss_pred cccccceeeccCCHHHHhCCcEEEE----ecCC--C-------cEEEEEeCCCccccCCcEEEEcCCCCCCCCCCCCCCc
Q 019828 185 RKGDDLFVEHTLSLTEALCGFQFVI----THLD--G-------RQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGK 251 (335)
Q Consensus 185 R~g~dL~~~~~I~l~eAl~G~~~~i----~~ld--G-------r~l~v~ip~g~vi~~g~~~~i~geGmP~~~~~~~~Gd 251 (335)
|+|.||++++.|+|.||+.|+...| ++++ | +.+.|.|||| +++|++++++|+|||.. +...+||
T Consensus 115 ~kg~di~~~v~isLee~~~G~~k~i~~~~~~~~g~G~~~~~~~~~~~V~Ip~G--~~~G~~i~~~g~G~~~~-~~~~~GD 191 (306)
T PRK10266 115 ARGHDIEIEVAVFLEETLTEHKRTISYNLPVYNAFGMIEQEIPKTLNVKIPAG--VGNGQRIRLKGQGTPGE-NGGPNGD 191 (306)
T ss_pred CCCCceEEEEEEEHHHhcCCceEEEEEecccccCCCeEEEeeeEEEEEEECCC--CcCCcEEEEecCCcCCC-CCCCCcc
Confidence 5789999999999999999995443 4454 3 5789999999 89999999999999965 3456899
Q ss_pred eEEEEEEeCCCC
Q 019828 252 LYIHFTVDFPES 263 (335)
Q Consensus 252 L~i~f~V~fP~~ 263 (335)
|||+|+|. |..
T Consensus 192 l~v~i~v~-ph~ 202 (306)
T PRK10266 192 LWLVIHIA-PHP 202 (306)
T ss_pred EEEEEEEc-CCC
Confidence 99999998 765
No 70
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=1.4e-07 Score=88.03 Aligned_cols=106 Identities=37% Similarity=0.677 Sum_probs=97.0
Q ss_pred EeeEEEEEEecCCCcCCCeEEecCCCCCCCCCCcccEEEEEEeecCCCcccccccceee--ccCCHHHHhCCcEEEEecC
Q 019828 135 QEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVE--HTLSLTEALCGFQFVITHL 212 (335)
Q Consensus 135 ~e~k~l~V~Ip~G~~~g~~i~~~g~G~~~~~~~~GDliv~i~~~~h~~F~R~g~dL~~~--~~I~l~eAl~G~~~~i~~l 212 (335)
.....+.+.+.+++..+..+.+..+|+..++..|-++++++..++|..|.|.+.+|.+. ..|++.+|++|+...++++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~f~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~~~~~~~~~~~~ 276 (306)
T KOG0714|consen 197 SRSRYLSISIKPGWKEGTKITFPEEGDEEPGILPADIEFVVDEKPHPLFSRDGNDLSYSSGYEISLKEALLGVTVFVPTL 276 (306)
T ss_pred CccceeEEeccCCcccccceeccccccccCCcCcceeEEEEecCCcccccCCCccceecccceeehhhhhcCcceeeecc
Confidence 35678899999999999999999999998888899999999999999999999999999 9999999999999999999
Q ss_pred CCcEEEEEeCCC-ccccCCcEEEEcCCCCCC
Q 019828 213 DGRQLLIKSQPG-EVVKPDQFKAINDEGMPM 242 (335)
Q Consensus 213 dGr~l~v~ip~g-~vi~~g~~~~i~geGmP~ 242 (335)
+++.+.+ +.. .++.++...+++++|||.
T Consensus 277 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 305 (306)
T KOG0714|consen 277 DGRSYSL--SINKDLIEPGEEDVIPGEGLPC 305 (306)
T ss_pred cCccccC--cccccccCCCceeeecCCCCCC
Confidence 9987655 444 678999999999999986
No 71
>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....
Probab=98.43 E-value=4.5e-07 Score=69.95 Aligned_cols=47 Identities=21% Similarity=0.424 Sum_probs=35.8
Q ss_pred EEEEEEecCCCcCCCeEEecCCCCCCC-CC-CcccEEEEEEeecCCCcc
Q 019828 138 KVLEVIVEKGMQNGQKITFPGEADEAP-DT-VTGDIVFVLQQKEHPKFK 184 (335)
Q Consensus 138 k~l~V~Ip~G~~~g~~i~~~g~G~~~~-~~-~~GDliv~i~~~~h~~F~ 184 (335)
+.++|.||+|+++|+.++++|+|.+.. +. ..|||||.+++.-+..+.
T Consensus 27 ~~~~i~ip~~~~~g~~~~i~g~G~p~~~~~~~~GdL~v~~~V~~P~~ls 75 (81)
T PF01556_consen 27 KTIKIKIPPGTQPGQQLRIKGKGMPKPKGGGKRGDLIVKFEVEFPKKLS 75 (81)
T ss_dssp -EEEEEETST-STT-EEEETTESEEESSSTTSBEEEEEEEEEE--SSTS
T ss_pred CEEEEeccCccCCCcEEeecCCCCCcCCCCCCcCCEEEEEEEECCCCCC
Confidence 578899999999999999999999744 33 699999999998665544
No 72
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=98.36 E-value=6.4e-07 Score=79.48 Aligned_cols=51 Identities=22% Similarity=0.454 Sum_probs=47.9
Q ss_pred eecCCCCCceeEEEcCcCCCCCCCCceEEEeeEEEEEEecCCCcCCCeEEec
Q 019828 106 QHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFP 157 (335)
Q Consensus 106 ~~~C~~C~G~G~~i~~~~~C~~C~G~g~~~e~k~l~V~Ip~G~~~g~~i~~~ 157 (335)
+.+|+.|+|+|+++..+++|+.|+|.|.+..++.+.+++ .|+.+|++|++.
T Consensus 99 ~~~C~~C~G~G~~i~~~~~C~~C~G~G~v~~~~~~~~k~-~g~~~g~~it~~ 149 (186)
T TIGR02642 99 SCKCPRCRGTGLIQRRQRECDTCAGTGRFRPTVEDLLKS-FGVDSGAAIVLK 149 (186)
T ss_pred CCcCCCCCCeeEEecCCCCCCCCCCccEEeeeEEEEEEe-eeccCCceeeHH
Confidence 578999999999998779999999999999999999999 999999999986
No 73
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=3.2e-05 Score=74.46 Aligned_cols=54 Identities=19% Similarity=0.312 Sum_probs=44.5
Q ss_pred CCCceEEE--eeEEEEEEecCC--CcCCCeEEecCCCCCCCCCCcccEEEEEEeecCC
Q 019828 128 CKGEKVIQ--EKKVLEVIVEKG--MQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHP 181 (335)
Q Consensus 128 C~G~g~~~--e~k~l~V~Ip~G--~~~g~~i~~~g~G~~~~~~~~GDliv~i~~~~h~ 181 (335)
|.+..+.. +-+.|++.++|| +.+|++++++|+|++..+...|||||.+.++-++
T Consensus 267 ~G~~~~~~~ldGr~l~~~~~pg~vi~~~~~~~v~~~gmp~~~~~~g~lyi~~~v~fp~ 324 (337)
T KOG0712|consen 267 CGFQRVWETLDGRLLKLSSKPGEVISPGDTKRVEGEGMPIFRNPKGDLYIKFEVKFPK 324 (337)
T ss_pred ccceEEEEccCCceEEEecCCCceeChhHEEeecCCCcccccCCCCcEEEEEEEEcCC
Confidence 44444444 458899999999 9999999999999986655599999999999665
No 74
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=97.72 E-value=1.7e-05 Score=80.09 Aligned_cols=68 Identities=28% Similarity=0.729 Sum_probs=30.6
Q ss_pred ecCCCCCCCccCCCcccCCCCCCccEEEEEE--------ecCCccceeeeecCCCCCceeEEEcCcCCCCCCCCceE
Q 019828 65 ICTKCKGKGSKSGASMKCSGCQGSGMKVSIR--------HLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKV 133 (335)
Q Consensus 65 ~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~--------~~gpg~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~ 133 (335)
.|+.|+|+|...-....|+.|+|+|..-..- +.+.-++.....+|+.|+|+|.+.- -+.|+.|.|.+.
T Consensus 4 ~C~~C~g~G~i~v~~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v-~~~c~~c~G~gk 79 (715)
T COG1107 4 KCPECGGKGKIVVGEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTV-YDTCPECGGTGK 79 (715)
T ss_pred cccccCCCceEeeeeeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEE-EeecccCCCcee
Confidence 4566666555443344566666665542111 0011122222345555555555432 345555555543
No 75
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.00014 Score=68.68 Aligned_cols=60 Identities=32% Similarity=0.782 Sum_probs=39.8
Q ss_pred eEecCCCCCCCccCC--------------------CcccCCCCCCccEEEEEEecCCccceeeeecCCCCCceeEEEcCc
Q 019828 63 NVICTKCKGKGSKSG--------------------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDK 122 (335)
Q Consensus 63 ~~~C~~C~G~G~~~~--------------------~~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~i~~~ 122 (335)
..+|+.|+|+|.... ....|..|+|+|. .+|++|.|+|.
T Consensus 198 ~~vc~gc~g~G~~~y~~~~~m~c~sc~G~~~~k~gt~~~C~~C~G~G~----------------~~C~tC~grG~----- 256 (406)
T KOG2813|consen 198 AMVCHGCSGSGSNSYGIGTPMHCMSCTGVPPPKIGTHDLCYMCHGRGI----------------KECHTCKGRGK----- 256 (406)
T ss_pred ceeccCcCCCCccccccCcceecccccCCCCCCCCccchhhhccCCCc----------------ccCCcccCCCC-----
Confidence 467999999984221 1234556666653 56778877775
Q ss_pred CCCCCCCCceEEEeeEEEEEE
Q 019828 123 DRCPQCKGEKVIQEKKVLEVI 143 (335)
Q Consensus 123 ~~C~~C~G~g~~~e~k~l~V~ 143 (335)
.+|.+|.|.|.......+.|.
T Consensus 257 k~C~TC~gtgsll~~t~~vV~ 277 (406)
T KOG2813|consen 257 KPCTTCSGTGSLLNYTRIVVY 277 (406)
T ss_pred cccccccCccceeeeEEEEEE
Confidence 678888888877776666554
No 76
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=97.42 E-value=0.00063 Score=71.44 Aligned_cols=94 Identities=13% Similarity=-0.012 Sum_probs=70.1
Q ss_pred CCcccccccceeeccCCHHHHhCCcEEEEec----C--CC-------cEEEEEeCCCccccCCcEEEEcCCCCCCCCCCC
Q 019828 181 PKFKRKGDDLFVEHTLSLTEALCGFQFVITH----L--DG-------RQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPF 247 (335)
Q Consensus 181 ~~F~R~g~dL~~~~~I~l~eAl~G~~~~i~~----l--dG-------r~l~v~ip~g~vi~~g~~~~i~geGmP~~~~~~ 247 (335)
+.|....-||.+.+.|+|.+++.|++.+|+. + +| +.|.|.||+| ++.|+.++++|+|-... +
T Consensus 650 ~~~~~~~~dI~y~l~vtLEeLY~G~tKkIKitR~V~~g~G~ktvkE~ktLeVkIPpG--VkdGqkIRf~GeGDegp---g 724 (871)
T TIGR03835 650 PNLDETNVNLVYEEEVPQILFFNNQIKEIKYTRHTVDGNTESTTNEAITLEIQLPIT--SQLNISAIFKGFGHDFG---N 724 (871)
T ss_pred CCccccccceEEecccCHHHHhCCCeEEEEEEEeeccCCCcceeeeeEEEEEecCCC--CCCCCEEEeccccCCCC---C
Confidence 3445556699999999999999999888732 2 22 3689999999 89999999999998643 2
Q ss_pred CCCceEEEEEEeCCCCCC--------HHHHHHHHhhCCCC
Q 019828 248 MRGKLYIHFTVDFPESLS--------PDQCKMLETVLPPR 279 (335)
Q Consensus 248 ~~GdL~i~f~V~fP~~l~--------~~~~~~L~~~lp~~ 279 (335)
..|||||.|.++-...+. .-.+.+.+.+|...
T Consensus 725 g~GDLyVvIkVKPHp~FrRdGdDL~~~v~ISL~EALLGgt 764 (871)
T TIGR03835 725 GCGDLKVVFKVIPSNFFQIKNDGLHVAALVDPLVAYNGGI 764 (871)
T ss_pred CCCCEEEEEEEcCCCCeEEECCeEEEEEecCHHHHhcCCE
Confidence 349999999998444332 22456677777644
No 77
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=97.33 E-value=8.2e-05 Score=55.14 Aligned_cols=43 Identities=33% Similarity=0.940 Sum_probs=29.6
Q ss_pred eeEecCCCCCCCccCC-------C---cccCCCCCCccEEEEEEecCCccceeeeecCCCCCcee
Q 019828 62 RNVICTKCKGKGSKSG-------A---SMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTG 116 (335)
Q Consensus 62 r~~~C~~C~G~G~~~~-------~---~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G 116 (335)
....|+.|+|+|.... . ..+|+.|+|+|.++ ...+|+.|+|+|
T Consensus 14 ~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i------------~~~~C~~C~G~g 66 (66)
T PF00684_consen 14 KPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII------------EKDPCKTCKGSG 66 (66)
T ss_dssp T-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-------------TSSB-SSSTTSS
T ss_pred CCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE------------CCCCCCCCCCcC
Confidence 3468999999997531 1 25799999999864 258999999976
No 78
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=96.28 E-value=0.0047 Score=62.97 Aligned_cols=46 Identities=30% Similarity=0.798 Sum_probs=35.2
Q ss_pred eEecCCCCCCCccCC------------------C-cccCCCCCCccEEEEEEecCCccceeeeecCCCCCceeEEEc
Q 019828 63 NVICTKCKGKGSKSG------------------A-SMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETIN 120 (335)
Q Consensus 63 ~~~C~~C~G~G~~~~------------------~-~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~i~ 120 (335)
...|+.|+|+|.... + ...|+.|+|.|.+.. ..+|+.|.|+|++..
T Consensus 18 ~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v------------~~~c~~c~G~gkv~~ 82 (715)
T COG1107 18 EEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTV------------YDTCPECGGTGKVLT 82 (715)
T ss_pred eeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEE------------EeecccCCCceeEEe
Confidence 457999999996321 1 247999999998753 478999999999764
No 79
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=0.0028 Score=60.16 Aligned_cols=74 Identities=28% Similarity=0.716 Sum_probs=43.8
Q ss_pred hhhcCceeEEeeeee---EecCCCCCCCccCCCcccCCCCCCccE--------EEEEEecCCccc---eeeeecCCCCCc
Q 019828 49 DLYNGTSKKLSLSRN---VICTKCKGKGSKSGASMKCSGCQGSGM--------KVSIRHLGPSMI---QQMQHPCNECKG 114 (335)
Q Consensus 49 e~y~G~~~~i~~~r~---~~C~~C~G~G~~~~~~~~C~~C~G~G~--------~~~~~~~gpg~~---~q~~~~C~~C~G 114 (335)
.++.|-...+.+... ..|..|.|.|+ ..|+.|+|.|. .......| +. --....|..|+|
T Consensus 170 ~mf~~~~~~~~vphs~~v~~ch~c~gRG~-----~vc~gc~g~G~~~y~~~~~m~c~sc~G--~~~~k~gt~~~C~~C~G 242 (406)
T KOG2813|consen 170 GMFSGVAHPAVVPHSMIVTFCHACLGRGA-----MVCHGCSGSGSNSYGIGTPMHCMSCTG--VPPPKIGTHDLCYMCHG 242 (406)
T ss_pred CcccccccceeccchHhhhhhhcccCCCc-----eeccCcCCCCccccccCcceecccccC--CCCCCCCccchhhhccC
Confidence 445555555555543 46999999994 47999999993 11111111 10 012345777777
Q ss_pred eeEEEcCcCCCCCCCCceEE
Q 019828 115 TGETINDKDRCPQCKGEKVI 134 (335)
Q Consensus 115 ~G~~i~~~~~C~~C~G~g~~ 134 (335)
+|. ..|.+|+|+|..
T Consensus 243 ~G~-----~~C~tC~grG~k 257 (406)
T KOG2813|consen 243 RGI-----KECHTCKGRGKK 257 (406)
T ss_pred CCc-----ccCCcccCCCCc
Confidence 774 667777777643
No 80
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=95.94 E-value=0.0048 Score=50.39 Aligned_cols=40 Identities=35% Similarity=0.924 Sum_probs=31.7
Q ss_pred ecCCCCCCCccC----CC---cccCCCCCCccEEEEEEecCCccceeeeecCCCCCceeEEEc
Q 019828 65 ICTKCKGKGSKS----GA---SMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETIN 120 (335)
Q Consensus 65 ~C~~C~G~G~~~----~~---~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~i~ 120 (335)
.|+.|+|+|... +. ..+|+.|+|+|. ..|..|.|+|...+
T Consensus 54 ~C~~C~G~G~v~~~~~g~~q~~~~C~~C~G~Gk----------------~~C~~C~G~G~~~~ 100 (111)
T PLN03165 54 VCRFCVGSGNVTVELGGGEKEVSKCINCDGAGS----------------LTCTTCQGSGIQPR 100 (111)
T ss_pred CCCCCcCcCeEEEEeCCcEEEEEECCCCCCcce----------------eeCCCCCCCEEEee
Confidence 799999999743 11 247999999995 24999999998764
No 81
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=95.39 E-value=0.0089 Score=53.25 Aligned_cols=29 Identities=38% Similarity=0.887 Sum_probs=16.3
Q ss_pred ccCCCCCCccEEEEEEecCCccceeeeecCCCCCceeEEE
Q 019828 80 MKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETI 119 (335)
Q Consensus 80 ~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~i 119 (335)
.+|+.|+|+|.++. ...+|+.|+|+|++.
T Consensus 100 ~~C~~C~G~G~~i~-----------~~~~C~~C~G~G~v~ 128 (186)
T TIGR02642 100 CKCPRCRGTGLIQR-----------RQRECDTCAGTGRFR 128 (186)
T ss_pred CcCCCCCCeeEEec-----------CCCCCCCCCCccEEe
Confidence 35666666665442 124566666666654
No 82
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=87.72 E-value=0.5 Score=44.42 Aligned_cols=64 Identities=30% Similarity=0.593 Sum_probs=39.5
Q ss_pred hhhhhcCceeEEeeeeeEecCCCCCCCccCCCcccCCCCCCccEEEEEEecCCccceeeeecCCCCCceeEEEcCcCCCC
Q 019828 47 LEDLYNGTSKKLSLSRNVICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCP 126 (335)
Q Consensus 47 Lee~y~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~i~~~~~C~ 126 (335)
|..+..|.. -...-.|..|.|.+. ..|..|+|+-.+...- -.-+ ....|..|+-.|- .+|+
T Consensus 217 L~~lL~~~p----~~~~~~C~~CGg~rF-----lpC~~C~GS~kv~~~~-~~~~----~~~rC~~CNENGL-----vrCp 277 (281)
T KOG2824|consen 217 LGKLLKGIP----CEGGGVCESCGGARF-----LPCSNCHGSCKVHEEE-EDDG----GVLRCLECNENGL-----VRCP 277 (281)
T ss_pred HHHHHhcCC----CCCCCcCCCcCCcce-----EecCCCCCceeeeeec-cCCC----cEEECcccCCCCc-----eeCC
Confidence 455555554 222356888877653 4799999987655410 0111 1367999998886 4688
Q ss_pred CCC
Q 019828 127 QCK 129 (335)
Q Consensus 127 ~C~ 129 (335)
.|.
T Consensus 278 ~Cs 280 (281)
T KOG2824|consen 278 VCS 280 (281)
T ss_pred ccC
Confidence 885
No 83
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=87.56 E-value=0.57 Score=44.70 Aligned_cols=39 Identities=18% Similarity=0.341 Sum_probs=29.4
Q ss_pred EEEEEeCCCccccCCcEEEEcCCCCCCCCCCCCCCceEEEEEEeCCCCCC
Q 019828 216 QLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLS 265 (335)
Q Consensus 216 ~l~v~ip~g~vi~~g~~~~i~geGmP~~~~~~~~GdL~i~f~V~fP~~l~ 265 (335)
.+.|.+|+| +..+.++++++.|- .+|+|.+.|.--..+.
T Consensus 234 ~i~i~~~~g--~~~~~~l~~~~~~~---------~~l~v~~~v~~~~~~~ 272 (288)
T KOG0715|consen 234 DIMIVLPAG--VRSADTLRFAGHGN---------DDLFVRLIVAKSPSFR 272 (288)
T ss_pred eEEeecCcc--cccccEEEEecCCc---------ceEEEEEEeccCcccc
Confidence 467788988 68899999998652 1999999987544333
No 84
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=83.34 E-value=1 Score=38.73 Aligned_cols=22 Identities=36% Similarity=0.848 Sum_probs=10.9
Q ss_pred ecCCCCCCCccCCCcccCCCCCCccEE
Q 019828 65 ICTKCKGKGSKSGASMKCSGCQGSGMK 91 (335)
Q Consensus 65 ~C~~C~G~G~~~~~~~~C~~C~G~G~~ 91 (335)
.|..|.|.+. ..|..|+|+-.+
T Consensus 101 ~C~~Cgg~rf-----v~C~~C~Gs~k~ 122 (147)
T cd03031 101 VCEGCGGARF-----VPCSECNGSCKV 122 (147)
T ss_pred CCCCCCCcCe-----EECCCCCCcceE
Confidence 3555555432 345555555444
No 85
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=80.38 E-value=1.9 Score=46.42 Aligned_cols=32 Identities=34% Similarity=0.806 Sum_probs=21.5
Q ss_pred ccCCCCCCccEEEEEEecCCccceeeeecCCCCCce
Q 019828 80 MKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGT 115 (335)
Q Consensus 80 ~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~ 115 (335)
-.|..|+|.|.+.....+-|.+ -.+|+.|+|+
T Consensus 731 GRCe~C~GdG~ikIeM~FLpdV----yv~CevC~Gk 762 (935)
T COG0178 731 GRCEACQGDGVIKIEMHFLPDV----YVPCEVCHGK 762 (935)
T ss_pred cCCccccCCceEEEEeccCCCc----eeeCCCcCCc
Confidence 3799999999877665655533 3566666654
No 86
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=79.25 E-value=4.4 Score=45.61 Aligned_cols=68 Identities=18% Similarity=0.442 Sum_probs=44.2
Q ss_pred Eeehhhhh--------cCceeEEeeeeeEecCCCCCCCccCCCcccCCCCCCccEEEEEEecCCccceeeeecCCCCCce
Q 019828 44 KVSLEDLY--------NGTSKKLSLSRNVICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGT 115 (335)
Q Consensus 44 ~vtLee~y--------~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~ 115 (335)
.-++.+++ .+....+.+. ...|++|..... ...|+.|...=. ....|+.|+..
T Consensus 641 qR~I~kAa~~a~~~~d~~G~ieVEV~-~rkCPkCG~~t~----~~fCP~CGs~te--------------~vy~CPsCGae 701 (1337)
T PRK14714 641 QRDVAKAAKHAPDMSDEGGVIEVEVG-RRRCPSCGTETY----ENRCPDCGTHTE--------------PVYVCPDCGAE 701 (1337)
T ss_pred cccHHHHHHhhhhccccCCeEEEEEE-EEECCCCCCccc----cccCcccCCcCC--------------CceeCccCCCc
Confidence 34577888 6666667765 567999987532 248999976521 12479999873
Q ss_pred eEEEcC---cCCCCCCCCce
Q 019828 116 GETIND---KDRCPQCKGEK 132 (335)
Q Consensus 116 G~~i~~---~~~C~~C~G~g 132 (335)
+... ...|+.|...-
T Consensus 702 --v~~des~a~~CP~CGtpl 719 (1337)
T PRK14714 702 --VPPDESGRVECPRCDVEL 719 (1337)
T ss_pred --cCCCccccccCCCCCCcc
Confidence 1110 23899998663
No 87
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=78.51 E-value=1.5 Score=48.30 Aligned_cols=33 Identities=36% Similarity=0.802 Sum_probs=18.6
Q ss_pred ccCCCCCCccEEEEEEecCCccceeeeecCCCCCcee
Q 019828 80 MKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTG 116 (335)
Q Consensus 80 ~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G 116 (335)
-.|+.|+|.|++....+.-+ -...+|+.|+|+.
T Consensus 737 G~C~~C~G~G~~~~~~~f~~----~~~~~C~~C~G~R 769 (924)
T TIGR00630 737 GRCEACQGDGVIKIEMHFLP----DVYVPCEVCKGKR 769 (924)
T ss_pred CCCCCCccceEEEEEccCCC----CcccCCCCcCCce
Confidence 36999999998765333222 2234555555443
No 88
>PRK04023 DNA polymerase II large subunit; Validated
Probab=74.65 E-value=4.2 Score=44.76 Aligned_cols=72 Identities=18% Similarity=0.355 Sum_probs=47.4
Q ss_pred eehhhhhc-CceeEEeeeeeEecCCCCCCCccCCCcccCCCCCCccEEEEEEecCCccceeeeecCCCCCceeEEEcCcC
Q 019828 45 VSLEDLYN-GTSKKLSLSRNVICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKD 123 (335)
Q Consensus 45 vtLee~y~-G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~i~~~~ 123 (335)
-++.+++. +.+.++.+.. ..|+.|.-.. ....|+.|...-. ....|+.|.-... ..
T Consensus 608 R~i~~A~~~~g~~eVEVg~-RfCpsCG~~t----~~frCP~CG~~Te--------------~i~fCP~CG~~~~----~y 664 (1121)
T PRK04023 608 RDINKAAKYKGTIEVEIGR-RKCPSCGKET----FYRRCPFCGTHTE--------------PVYRCPRCGIEVE----ED 664 (1121)
T ss_pred ccHHHHHhcCCceeecccC-ccCCCCCCcC----CcccCCCCCCCCC--------------cceeCccccCcCC----CC
Confidence 34778887 6777777664 5699997664 3368999987611 1357999943322 36
Q ss_pred CCCCCCCceEEEeeEE
Q 019828 124 RCPQCKGEKVIQEKKV 139 (335)
Q Consensus 124 ~C~~C~G~g~~~e~k~ 139 (335)
.|++|.-+-.....+.
T Consensus 665 ~CPKCG~El~~~s~~~ 680 (1121)
T PRK04023 665 ECEKCGREPTPYSKRK 680 (1121)
T ss_pred cCCCCCCCCCccceEE
Confidence 7999987754444333
No 89
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=73.93 E-value=3.1 Score=46.04 Aligned_cols=18 Identities=33% Similarity=0.720 Sum_probs=12.8
Q ss_pred ccCCCCCCccEEEEEEec
Q 019828 80 MKCSGCQGSGMKVSIRHL 97 (335)
Q Consensus 80 ~~C~~C~G~G~~~~~~~~ 97 (335)
-.|+.|+|.|++....+.
T Consensus 739 G~C~~C~G~G~~~~~~~f 756 (943)
T PRK00349 739 GRCEACQGDGVIKIEMHF 756 (943)
T ss_pred CCCCcccccceEEEEecc
Confidence 359999999987654443
No 90
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=70.46 E-value=4.2 Score=38.34 Aligned_cols=40 Identities=28% Similarity=0.792 Sum_probs=29.1
Q ss_pred ccCCCCCCccEEEEEEecCCccceeeeecCCCCCceeEEEc---C---cCCCCCCCCceEEE
Q 019828 80 MKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETIN---D---KDRCPQCKGEKVIQ 135 (335)
Q Consensus 80 ~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~i~---~---~~~C~~C~G~g~~~ 135 (335)
-.|..|.|.++ .+|..|+|+-++.. . -.+|..|+=.|.++
T Consensus 230 ~~C~~CGg~rF----------------lpC~~C~GS~kv~~~~~~~~~~~rC~~CNENGLvr 275 (281)
T KOG2824|consen 230 GVCESCGGARF----------------LPCSNCHGSCKVHEEEEDDGGVLRCLECNENGLVR 275 (281)
T ss_pred CcCCCcCCcce----------------EecCCCCCceeeeeeccCCCcEEECcccCCCCcee
Confidence 36888888775 57999999888775 1 24788888776653
No 91
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=68.55 E-value=3.5 Score=48.48 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=18.3
Q ss_pred CceEEEEEEeCCCC-CCHHHHHHHHhhC
Q 019828 250 GKLYIHFTVDFPES-LSPDQCKMLETVL 276 (335)
Q Consensus 250 GdL~i~f~V~fP~~-l~~~~~~~L~~~l 276 (335)
..||| .+=|.. |.+.+.+.|-++|
T Consensus 1721 ~~lyi---lDEPt~GLh~~d~~~Ll~~l 1745 (1809)
T PRK00635 1721 PTLFL---LDEIATSLDNQQKSALLVQL 1745 (1809)
T ss_pred CcEEE---EcCCCCCCCHHHHHHHHHHH
Confidence 47776 466887 9998888887775
No 92
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=68.53 E-value=5.2 Score=34.34 Aligned_cols=39 Identities=33% Similarity=0.982 Sum_probs=31.6
Q ss_pred ccCCCCCCccEEEEEEecCCccceeeeecCCCCCceeEEEcCc-------CCCCCCCCceEE
Q 019828 80 MKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDK-------DRCPQCKGEKVI 134 (335)
Q Consensus 80 ~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~i~~~-------~~C~~C~G~g~~ 134 (335)
..|..|.|.++ .+|..|+|+-+++.+. .+|+.|+=.|.+
T Consensus 100 ~~C~~Cgg~rf----------------v~C~~C~Gs~k~~~~~~~~~~~~~rC~~Cnengl~ 145 (147)
T cd03031 100 GVCEGCGGARF----------------VPCSECNGSCKVFAENATAAGGFLRCPECNENGLV 145 (147)
T ss_pred CCCCCCCCcCe----------------EECCCCCCcceEEeccCcccccEEECCCCCccccc
Confidence 46999999886 6899999999887655 489999876654
No 93
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=65.35 E-value=9.2 Score=33.27 Aligned_cols=49 Identities=24% Similarity=0.405 Sum_probs=45.7
Q ss_pred EEEecCCCcCCCeEEecCCCCCCCCCCcccEEEEEEeecCCCcccccccc
Q 019828 141 EVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDL 190 (335)
Q Consensus 141 ~V~Ip~G~~~g~~i~~~g~G~~~~~~~~GDliv~i~~~~h~~F~R~g~dL 190 (335)
.+.++.++..+..+++.+.+...+ ...++.+..+..++|+.|...++++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (237)
T COG2214 179 KSTIKAGALEGKALRLKGLLKSAR-GALGKARLKELSKRHPPFALEGDDK 227 (237)
T ss_pred cccCCcccccCceeeecccCCcCC-CCcccceeeeeccCCCCccccCCcc
Confidence 379999999999999999998777 7789999999999999999999999
No 94
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=65.17 E-value=3.4 Score=45.65 Aligned_cols=31 Identities=29% Similarity=0.604 Sum_probs=25.8
Q ss_pred ecCCCCCceeEEEc-------CcCCCCCCCCceEEEee
Q 019828 107 HPCNECKGTGETIN-------DKDRCPQCKGEKVIQEK 137 (335)
Q Consensus 107 ~~C~~C~G~G~~i~-------~~~~C~~C~G~g~~~e~ 137 (335)
-.|+.|.|.|.+.. ....|+.|+|+++..+.
T Consensus 737 G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~e~ 774 (924)
T TIGR00630 737 GRCEACQGDGVIKIEMHFLPDVYVPCEVCKGKRYNRET 774 (924)
T ss_pred CCCCCCccceEEEEEccCCCCcccCCCCcCCceeChHH
Confidence 56999999999873 24699999999988874
No 95
>TIGR00310 ZPR1_znf ZPR1 zinc finger domain.
Probab=59.11 E-value=29 Score=31.18 Aligned_cols=35 Identities=20% Similarity=0.395 Sum_probs=19.4
Q ss_pred cCCCCCCccEEEEEEec-CC--ccceeeeecCCCCCce
Q 019828 81 KCSGCQGSGMKVSIRHL-GP--SMIQQMQHPCNECKGT 115 (335)
Q Consensus 81 ~C~~C~G~G~~~~~~~~-gp--g~~~q~~~~C~~C~G~ 115 (335)
.|+.|...|........ -| +=+--+...|+.|+=+
T Consensus 2 ~Cp~C~~~~~~~~~~~~~IP~F~evii~sf~C~~CGyr 39 (192)
T TIGR00310 2 DCPSCGGECETVMKTVNDIPYFGEVLETSTICEHCGYR 39 (192)
T ss_pred cCCCCCCCCEEEEEEEcCCCCcceEEEEEEECCCCCCc
Confidence 47777777765333332 33 2233345678888755
No 96
>smart00709 Zpr1 Duplicated domain in the epidermal growth factor- and elongation factor-1alpha-binding protein Zpr1. Also present in archaeal proteins.
Probab=54.65 E-value=39 Score=29.41 Aligned_cols=35 Identities=23% Similarity=0.523 Sum_probs=18.7
Q ss_pred cCCCCCCccEEEEEEecCC--ccceeeeecCCCCCce
Q 019828 81 KCSGCQGSGMKVSIRHLGP--SMIQQMQHPCNECKGT 115 (335)
Q Consensus 81 ~C~~C~G~G~~~~~~~~gp--g~~~q~~~~C~~C~G~ 115 (335)
.|+.|...|......-.-| +=+--+...|+.|+=+
T Consensus 2 ~Cp~C~~~~~~~~~~~~IP~F~evii~sf~C~~CGyk 38 (160)
T smart00709 2 DCPSCGGNGTTRMLLTSIPYFREVIIMSFECEHCGYR 38 (160)
T ss_pred cCCCCCCCCEEEEEEecCCCcceEEEEEEECCCCCCc
Confidence 4777776665333222223 2222345678888755
No 97
>TIGR00340 zpr1_rel ZPR1-related zinc finger protein. A model ZPR1_znf (TIGR00310) has been created to describe the domain shared by this protein and ZPR1.
Probab=49.74 E-value=95 Score=27.09 Aligned_cols=26 Identities=27% Similarity=0.331 Sum_probs=16.0
Q ss_pred cEEEEecCCCcEEEEEeCCCccccCCcEEEEc
Q 019828 205 FQFVITHLDGRQLLIKSQPGEVVKPDQFKAIN 236 (335)
Q Consensus 205 ~~~~i~~ldGr~l~v~ip~g~vi~~g~~~~i~ 236 (335)
+++.||-| -+++|||. ...|.+-.|.
T Consensus 72 a~i~IPEl-----~lei~pg~-~~~G~iTTVE 97 (163)
T TIGR00340 72 ATIRIPEL-----GIKIEPGP-ASQGYISNIE 97 (163)
T ss_pred cEEEccce-----eEEecCCC-cCCceEEehH
Confidence 46777764 46778873 2456655563
No 98
>cd05792 S1_eIF1AD_like S1_eIF1AD_like: eukaryotic translation initiation factor 1A domain containing protein (eIF1AD)-like, S1-like RNA-binding domain. eIF1AD is also known as MGC11102 protein. Little is known about the function of eIF1AD. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins, including translation initiation factor IF1A (also referred to as eIF1A in eukaryotes). eIF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors.
Probab=48.67 E-value=86 Score=23.94 Aligned_cols=23 Identities=13% Similarity=0.172 Sum_probs=17.5
Q ss_pred HhCCc-EEEEecCCCcEEEEEeCC
Q 019828 201 ALCGF-QFVITHLDGRQLLIKSQP 223 (335)
Q Consensus 201 Al~G~-~~~i~~ldGr~l~v~ip~ 223 (335)
+++|. -+++...||.+..+++|+
T Consensus 8 ~~~G~n~~~V~~~dG~~~l~~iP~ 31 (78)
T cd05792 8 GSKGNNLHEVETPNGSRYLVSMPT 31 (78)
T ss_pred EcCCCcEEEEEcCCCCEEEEEech
Confidence 34555 477899999998888874
No 99
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=48.08 E-value=23 Score=38.17 Aligned_cols=61 Identities=26% Similarity=0.620 Sum_probs=40.2
Q ss_pred cCceeEEeeee-----eEecCCCCCCCccCCCcccCCCCCCccEEEEEEecCCccceeeeecCCCCCceeEEEcCcCCCC
Q 019828 52 NGTSKKLSLSR-----NVICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCP 126 (335)
Q Consensus 52 ~G~~~~i~~~r-----~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~i~~~~~C~ 126 (335)
.|...-+-++| ...|..|.- ...|+.|... +. .++.. -+..|..|+-... + -..|+
T Consensus 419 ~geQ~llflnRRGys~~l~C~~Cg~-------v~~Cp~Cd~~-lt--~H~~~------~~L~CH~Cg~~~~-~--p~~Cp 479 (730)
T COG1198 419 RGEQVLLFLNRRGYAPLLLCRDCGY-------IAECPNCDSP-LT--LHKAT------GQLRCHYCGYQEP-I--PQSCP 479 (730)
T ss_pred cCCeEEEEEccCCccceeecccCCC-------cccCCCCCcc-eE--EecCC------CeeEeCCCCCCCC-C--CCCCC
Confidence 45555566665 489999953 3589999876 22 22211 2578999986632 2 37999
Q ss_pred CCCCc
Q 019828 127 QCKGE 131 (335)
Q Consensus 127 ~C~G~ 131 (335)
.|.+.
T Consensus 480 ~Cgs~ 484 (730)
T COG1198 480 ECGSE 484 (730)
T ss_pred CCCCC
Confidence 99876
No 100
>PF02814 UreE_N: UreE urease accessory protein, N-terminal domain; InterPro: IPR004029 Urease and other nickel metalloenzymes are synthesised as precursors devoid of the metalloenzyme active site. These precursors then undergo a complex post-translational maturation process that requires a number of accessory proteins. Members of this group are nickel-binding proteins required for urease metallocentre assembly []. They are believed to function as metallochaperones to deliver nickel to urease apoprotein [, ]. It has been shown by yeast two-hybrid analysis that UreE forms a dimeric complex with UreG in Helicobacter pylori []. The UreDFG-apoenzyme complex has also been shown to exist [, ] and is believed to be, with the addition of UreE, the assembly system for active urease []. The complexes, rather than the individual proteins, presumably bind to UreB via UreE/H recognition sites. The structure of Klebsiella aerogenes UreE reveals a unique two-domain architecture.The N-terminal domain is structurally related to a heat shock protein, while the C-terminal domain shows homology to the Atx1 copper metallochaperone [, ]. Significantly, the metal-binding sites in UreE and Atx1 are distinct in location and types of residues despite the relationship between these proteins and the mechanism for UreE activation of urease is proposed to be different from the thiol ligand exchange mechanism used by the copper metallochaperones. The N-terminal domain is termed the peptide-binding domain. Deletion of this domain does not eliminate enzymatic activity, and the truncated protein can still activate urease [].; GO: 0016151 nickel ion binding, 0006461 protein complex assembly, 0019627 urea metabolic process; PDB: 3NXZ_B 3TJA_B 3LA0_B 3TJ9_B 3NY0_A 3L9Z_A 3TJ8_A 1EAR_A 1EB0_A 1GMU_B ....
Probab=46.60 E-value=46 Score=24.08 Aligned_cols=32 Identities=25% Similarity=0.419 Sum_probs=23.0
Q ss_pred EEEEecCCCcEEEEEeCCCccccCCcEEEEcC
Q 019828 206 QFVITHLDGRQLLIKSQPGEVVKPDQFKAIND 237 (335)
Q Consensus 206 ~~~i~~ldGr~l~v~ip~g~vi~~g~~~~i~g 237 (335)
...+.|-+|+.+-|.+|.+..+++|+++....
T Consensus 30 r~r~~t~~G~ei~i~L~r~~~L~~GDvL~~d~ 61 (65)
T PF02814_consen 30 RLRLTTDDGREIGIDLPRGTVLRDGDVLYLDD 61 (65)
T ss_dssp EEEEE-TTS-EEEEE-SSTTT--TTEEEEECT
T ss_pred EEEEECCCCCEEEEECCCCcccCCCCEEEeCC
Confidence 46778889999999999999999999997754
No 101
>PF12991 DUF3875: Domain of unknown function, B. Theta Gene description (DUF3875); InterPro: IPR024451 This domain of unknown function is found in proteins from Bacteroidetes, including the conjugation system ATPase, TraG.
Probab=46.51 E-value=24 Score=24.98 Aligned_cols=25 Identities=28% Similarity=0.579 Sum_probs=19.8
Q ss_pred CCCceEEEEEEeCCCC--CCHHHHHHH
Q 019828 248 MRGKLYIHFTVDFPES--LSPDQCKML 272 (335)
Q Consensus 248 ~~GdL~i~f~V~fP~~--l~~~~~~~L 272 (335)
..||+.|-|+|.+|+- +|.++.+.|
T Consensus 26 k~gDiTv~f~v~LPEiFtls~~eYea~ 52 (54)
T PF12991_consen 26 KNGDITVAFRVELPEIFTLSEAEYEAI 52 (54)
T ss_pred cCCCEEEEEEecCCeeEEechhHhHHh
Confidence 3699999999999997 566665554
No 102
>TIGR00757 RNaseEG ribonuclease, Rne/Rng family. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome.
Probab=43.99 E-value=14 Score=37.18 Aligned_cols=32 Identities=28% Similarity=0.553 Sum_probs=22.4
Q ss_pred cEEEEEE-ecCCccceeeeecCCCCCceeEEEc
Q 019828 89 GMKVSIR-HLGPSMIQQMQHPCNECKGTGETIN 120 (335)
Q Consensus 89 G~~~~~~-~~gpg~~~q~~~~C~~C~G~G~~i~ 120 (335)
|.+-.+| +.++.+...+..+|+.|+|+|.+..
T Consensus 372 GLvE~TRkr~~~sL~e~~~~~Cp~C~G~G~v~s 404 (414)
T TIGR00757 372 GLVEMTRKRLRESLMEVLGTVCPHCSGTGIVKT 404 (414)
T ss_pred cceEEeccccCcChHHHhcCCCCCCcCeeEEcc
Confidence 5444443 4666677777888999999998754
No 103
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=42.07 E-value=10 Score=44.82 Aligned_cols=16 Identities=19% Similarity=0.044 Sum_probs=10.2
Q ss_pred CC--HHHHHHHHhhCCCC
Q 019828 264 LS--PDQCKMLETVLPPR 279 (335)
Q Consensus 264 l~--~~~~~~L~~~lp~~ 279 (335)
|| +.|+-+|.+.|..+
T Consensus 1700 LSGGE~qRikLa~~l~~~ 1717 (1809)
T PRK00635 1700 LSLSEKIAIKIAKFLYLP 1717 (1809)
T ss_pred cCchHHHHHHHHHHHhcC
Confidence 66 56776777777543
No 104
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=41.10 E-value=13 Score=23.95 Aligned_cols=7 Identities=43% Similarity=1.213 Sum_probs=3.3
Q ss_pred cCCCCCC
Q 019828 81 KCSGCQG 87 (335)
Q Consensus 81 ~C~~C~G 87 (335)
+|+.|+.
T Consensus 4 ~CP~C~~ 10 (37)
T PF13719_consen 4 TCPNCQT 10 (37)
T ss_pred ECCCCCc
Confidence 3555543
No 105
>PRK14873 primosome assembly protein PriA; Provisional
Probab=40.75 E-value=36 Score=36.38 Aligned_cols=60 Identities=22% Similarity=0.594 Sum_probs=39.1
Q ss_pred hcCceeEEeeeee-----EecCCCCCCCccCCCcccCCCCCCccEEEEEEecCCccceeeeecCCCCCceeEEEcCcCCC
Q 019828 51 YNGTSKKLSLSRN-----VICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRC 125 (335)
Q Consensus 51 y~G~~~~i~~~r~-----~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~i~~~~~C 125 (335)
-.| ..=+-++|. +.|..|. ....|+.|.+.=. . ++. .....|..|+-.- . -..|
T Consensus 367 ~~g-qvll~lnRrGyap~l~C~~Cg-------~~~~C~~C~~~L~-~--h~~------~~~l~Ch~CG~~~--~--p~~C 425 (665)
T PRK14873 367 EHG-PVLVQVPRRGYVPSLACARCR-------TPARCRHCTGPLG-L--PSA------GGTPRCRWCGRAA--P--DWRC 425 (665)
T ss_pred hcC-cEEEEecCCCCCCeeEhhhCc-------CeeECCCCCCcee-E--ecC------CCeeECCCCcCCC--c--CccC
Confidence 356 666666763 7999995 2368999987521 1 110 1246799997542 2 4799
Q ss_pred CCCCCc
Q 019828 126 PQCKGE 131 (335)
Q Consensus 126 ~~C~G~ 131 (335)
+.|.+.
T Consensus 426 p~Cgs~ 431 (665)
T PRK14873 426 PRCGSD 431 (665)
T ss_pred CCCcCC
Confidence 999876
No 106
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=39.00 E-value=10 Score=41.17 Aligned_cols=62 Identities=21% Similarity=0.498 Sum_probs=0.0
Q ss_pred eEEeeeeeEecCCCCCCCccCCCcccCCCCCCccEEEEEEecCCccceeeeecCCCCCceeEEEcCcCCCCCCCCceEEE
Q 019828 56 KKLSLSRNVICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQ 135 (335)
Q Consensus 56 ~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~~~ 135 (335)
.++.+. ...|+.|.-.. ....|+.|...=. ....|+.|+-.- ..+.|++|.-.....
T Consensus 649 i~vei~-~r~Cp~Cg~~t----~~~~Cp~CG~~T~--------------~~~~Cp~C~~~~----~~~~C~~C~~~~~~~ 705 (900)
T PF03833_consen 649 IEVEIG-RRRCPKCGKET----FYNRCPECGSHTE--------------PVYVCPDCGIEV----EEDECPKCGRETTSY 705 (900)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eEEeee-cccCcccCCcc----hhhcCcccCCccc--------------cceecccccccc----CccccccccccCccc
Confidence 444443 34688885432 2357888865422 235788887432 246899998765444
Q ss_pred eeEEE
Q 019828 136 EKKVL 140 (335)
Q Consensus 136 e~k~l 140 (335)
..+.+
T Consensus 706 ~~~~i 710 (900)
T PF03833_consen 706 SKQKI 710 (900)
T ss_dssp -----
T ss_pred ceeec
Confidence 44333
No 107
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=37.99 E-value=45 Score=27.69 Aligned_cols=22 Identities=9% Similarity=0.092 Sum_probs=15.1
Q ss_pred eEEEEEEecCCCcCCCeEEecC
Q 019828 137 KKVLEVIVEKGMQNGQKITFPG 158 (335)
Q Consensus 137 ~k~l~V~Ip~G~~~g~~i~~~g 158 (335)
...+++.-+.+.+.||.+.+.-
T Consensus 41 ~~~~~~~~~~~~~~GD~V~v~i 62 (135)
T PF04246_consen 41 PITFRAPNPIGAKVGDRVEVEI 62 (135)
T ss_pred cEEEEecCCCCCCCCCEEEEEe
Confidence 3566667777777777777653
No 108
>PRK08351 DNA-directed RNA polymerase subunit E''; Validated
Probab=37.97 E-value=31 Score=25.16 Aligned_cols=26 Identities=35% Similarity=0.873 Sum_probs=16.2
Q ss_pred cCCCCCceeEEEcCcCCCCCCCCceEEEee
Q 019828 108 PCNECKGTGETINDKDRCPQCKGEKVIQEK 137 (335)
Q Consensus 108 ~C~~C~G~G~~i~~~~~C~~C~G~g~~~e~ 137 (335)
.|..|+ .+.+.+.|+.|...-.+.+-
T Consensus 5 AC~~C~----~i~~~~~CP~Cgs~~~T~~W 30 (61)
T PRK08351 5 ACRHCH----YITTEDRCPVCGSRDLSDEW 30 (61)
T ss_pred hhhhCC----cccCCCcCCCCcCCcccccc
Confidence 566675 33356688888876544443
No 109
>COG2093 DNA-directed RNA polymerase, subunit E'' [Transcription]
Probab=34.86 E-value=31 Score=25.23 Aligned_cols=22 Identities=27% Similarity=0.587 Sum_probs=13.7
Q ss_pred CCCCCCceEEEeeEEEEEEecC
Q 019828 125 CPQCKGEKVIQEKKVLEVIVEK 146 (335)
Q Consensus 125 C~~C~G~g~~~e~k~l~V~Ip~ 146 (335)
|+.|+....+.+-.-+-|-|.|
T Consensus 21 CP~Cgs~~~te~W~G~~iIidp 42 (64)
T COG2093 21 CPVCGSTDLTEEWFGLLIIIDP 42 (64)
T ss_pred CCCCCCcccchhhccEEEEEcC
Confidence 8888877776665544444433
No 110
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=34.40 E-value=1.6e+02 Score=32.71 Aligned_cols=14 Identities=14% Similarity=0.052 Sum_probs=8.5
Q ss_pred CCCHHHHHHHHhhC
Q 019828 263 SLSPDQCKMLETVL 276 (335)
Q Consensus 263 ~l~~~~~~~L~~~l 276 (335)
.+++.+...|-+++
T Consensus 568 kms~~~Q~aLlEaM 581 (915)
T PTZ00111 568 KCHNESRLSLYEVM 581 (915)
T ss_pred hCCHHHHHHHHHHH
Confidence 36666666665555
No 111
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=34.40 E-value=19 Score=40.00 Aligned_cols=51 Identities=22% Similarity=0.494 Sum_probs=28.0
Q ss_pred EEEEEeehhhhhcCce---------eEEeeee-eEecCCCCCCCccCCC-------cccCCCCCCccE
Q 019828 40 IHPLKVSLEDLYNGTS---------KKLSLSR-NVICTKCKGKGSKSGA-------SMKCSGCQGSGM 90 (335)
Q Consensus 40 ~~~l~vtLee~y~G~~---------~~i~~~r-~~~C~~C~G~G~~~~~-------~~~C~~C~G~G~ 90 (335)
...+.-.|..+|.... ..++++. .-.|+.|+|.|..... ..+|+.|+|..+
T Consensus 705 y~g~~d~iR~lfa~~~~a~~~g~~~~~FS~N~~~G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~ 772 (943)
T PRK00349 705 YTGVFDPIRELFAGTPEAKARGYKPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCDVCKGKRY 772 (943)
T ss_pred eccccHHHHHHhccCccccccCCCcccCCCCCCCCCCCcccccceEEEEeccCCCccccCccccCccc
Confidence 3334444566764321 2344443 4569999999975421 235555555544
No 112
>COG5216 Uncharacterized conserved protein [Function unknown]
Probab=34.07 E-value=46 Score=24.06 Aligned_cols=14 Identities=50% Similarity=0.729 Sum_probs=12.1
Q ss_pred EEeehhhhhcCcee
Q 019828 43 LKVSLEDLYNGTSK 56 (335)
Q Consensus 43 l~vtLee~y~G~~~ 56 (335)
++++|+++.+|...
T Consensus 31 FeIsLeDl~~GE~V 44 (67)
T COG5216 31 FEISLEDLRNGEVV 44 (67)
T ss_pred eEEEHHHhhCCceE
Confidence 67999999999765
No 113
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=33.53 E-value=36 Score=32.90 Aligned_cols=10 Identities=20% Similarity=0.637 Sum_probs=5.8
Q ss_pred eEecCCCCCC
Q 019828 63 NVICTKCKGK 72 (335)
Q Consensus 63 ~~~C~~C~G~ 72 (335)
.-.|+.|.+.
T Consensus 187 ~~~CPvCGs~ 196 (309)
T PRK03564 187 RQFCPVCGSM 196 (309)
T ss_pred CCCCCCCCCc
Confidence 3456666554
No 114
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=33.35 E-value=21 Score=33.05 Aligned_cols=14 Identities=36% Similarity=0.828 Sum_probs=8.3
Q ss_pred ecCCCCCceeEEEc
Q 019828 107 HPCNECKGTGETIN 120 (335)
Q Consensus 107 ~~C~~C~G~G~~i~ 120 (335)
.+|++|.|+|++.+
T Consensus 39 vtCPTCqGtGrIP~ 52 (238)
T PF07092_consen 39 VTCPTCQGTGRIPR 52 (238)
T ss_pred CcCCCCcCCccCCc
Confidence 45666666666543
No 115
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=33.33 E-value=25 Score=37.38 Aligned_cols=49 Identities=29% Similarity=0.787 Sum_probs=30.9
Q ss_pred EecCCCCCCCccCCCcccCCCCCCccEEEEEEecCCccceeeeecCCCCCceeEEEcCcCCCCCCCCc
Q 019828 64 VICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGE 131 (335)
Q Consensus 64 ~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~ 131 (335)
++|+.|+..-. ...+.|+.|... . ....|+.|+-. +......|+.|.-+
T Consensus 2 ~~Cp~Cg~~n~--~~akFC~~CG~~-l--------------~~~~Cp~CG~~--~~~~~~fC~~CG~~ 50 (645)
T PRK14559 2 LICPQCQFENP--NNNRFCQKCGTS-L--------------THKPCPQCGTE--VPVDEAHCPNCGAE 50 (645)
T ss_pred CcCCCCCCcCC--CCCccccccCCC-C--------------CCCcCCCCCCC--CCcccccccccCCc
Confidence 46999975532 223679999322 1 12479999754 33445789999766
No 116
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=32.81 E-value=46 Score=28.79 Aligned_cols=35 Identities=14% Similarity=0.314 Sum_probs=20.9
Q ss_pred cCCCCCCcc-EEEEEEecCCccceeeeecCCCCCce
Q 019828 81 KCSGCQGSG-MKVSIRHLGPSMIQQMQHPCNECKGT 115 (335)
Q Consensus 81 ~C~~C~G~G-~~~~~~~~gpg~~~q~~~~C~~C~G~ 115 (335)
+||.|...- .++..+-+.+|..-.....|+.|+.+
T Consensus 2 ~cp~c~~~~~~~~~s~~~~~~~~~~~~~~c~~c~~~ 37 (154)
T PRK00464 2 RCPFCGHPDTRVIDSRPAEDGNAIRRRRECLACGKR 37 (154)
T ss_pred cCCCCCCCCCEeEeccccCCCCceeeeeeccccCCc
Confidence 578887766 55556666666333333566666654
No 117
>TIGR00523 eIF-1A eukaryotic/archaeal initiation factor 1A. Recommended nomenclature: eIF-1A for eukaryotes, aIF-1A for Archaea. Also called eIF-4C
Probab=32.70 E-value=1.9e+02 Score=23.11 Aligned_cols=59 Identities=14% Similarity=0.187 Sum_probs=34.2
Q ss_pred CcEEEEecCCCcEEEEEeCCCcc-----ccCCcEEEEcCCCCCCCCCCCCCCceEEEEEEeCCCCCCHHHHHHHHhh
Q 019828 204 GFQFVITHLDGRQLLIKSQPGEV-----VKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETV 275 (335)
Q Consensus 204 G~~~~i~~ldGr~l~v~ip~g~v-----i~~g~~~~i~geGmP~~~~~~~~GdL~i~f~V~fP~~l~~~~~~~L~~~ 275 (335)
+..+.|...||..+...+| |.. |++|+.+.|. |..-....+|+++-+ ++++|...|++.
T Consensus 31 ~~~~~V~~~dG~~~la~i~-GK~Rk~iwI~~GD~VlVs----p~d~~~~~kg~Iv~r--------~~~~qv~~L~~~ 94 (99)
T TIGR00523 31 AGRVKVRCLDGKTRLGRIP-GKLKKRIWIREGDVVIVK----PWEFQGDDKCDIVWR--------YTKTQVEWLKRK 94 (99)
T ss_pred CCEEEEEeCCCCEEEEEEc-hhhcccEEecCCCEEEEE----EccCCCCccEEEEEE--------cCHHHHHHHHHc
Confidence 3457777788888777775 442 4556666662 221111245665543 567787777653
No 118
>PF10080 DUF2318: Predicted membrane protein (DUF2318); InterPro: IPR018758 This domain of unknown function is found in hypothetical bacterial membrane proteins with no known function.
Probab=32.38 E-value=74 Score=25.60 Aligned_cols=24 Identities=25% Similarity=0.555 Sum_probs=12.4
Q ss_pred eecCCCCCceeEEEc-CcCCCCCCC
Q 019828 106 QHPCNECKGTGETIN-DKDRCPQCK 129 (335)
Q Consensus 106 ~~~C~~C~G~G~~i~-~~~~C~~C~ 129 (335)
-..|.-|.++|+..+ ....|..|.
T Consensus 35 ~daCeiC~~~GY~q~g~~lvC~~C~ 59 (102)
T PF10080_consen 35 FDACEICGPKGYYQEGDQLVCKNCG 59 (102)
T ss_pred EEeccccCCCceEEECCEEEEecCC
Confidence 355555555555543 223466664
No 119
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=31.32 E-value=62 Score=26.33 Aligned_cols=25 Identities=32% Similarity=0.777 Sum_probs=11.3
Q ss_pred ecCCCCCceeEEEcCcCCCCCCCCc
Q 019828 107 HPCNECKGTGETINDKDRCPQCKGE 131 (335)
Q Consensus 107 ~~C~~C~G~G~~i~~~~~C~~C~G~ 131 (335)
..|..|+-...+......|+.|.+.
T Consensus 71 ~~C~~Cg~~~~~~~~~~~CP~Cgs~ 95 (113)
T PRK12380 71 AWCWDCSQVVEIHQHDAQCPHCHGE 95 (113)
T ss_pred EEcccCCCEEecCCcCccCcCCCCC
Confidence 4455555333332233446666544
No 120
>PRK11712 ribonuclease G; Provisional
Probab=31.23 E-value=23 Score=36.45 Aligned_cols=32 Identities=22% Similarity=0.425 Sum_probs=22.0
Q ss_pred cEEEEEE-ecCCccceeeeecCCCCCceeEEEc
Q 019828 89 GMKVSIR-HLGPSMIQQMQHPCNECKGTGETIN 120 (335)
Q Consensus 89 G~~~~~~-~~gpg~~~q~~~~C~~C~G~G~~i~ 120 (335)
|.+-.+| +.++.+...+..+|+.|+|+|.+..
T Consensus 384 GLvEmTRkR~r~sl~~~l~~~Cp~C~G~G~v~s 416 (489)
T PRK11712 384 GLVEMTRKRTRESLEHVLCGECPTCHGRGTVKT 416 (489)
T ss_pred ceEEEEecccCCChHHHhcCCCCCCCCCCCcCC
Confidence 5443333 5666677777788999999887653
No 121
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=31.04 E-value=31 Score=28.06 Aligned_cols=26 Identities=23% Similarity=0.514 Sum_probs=11.9
Q ss_pred ecCCCCCceeEEEcCcCCCCCCCCce
Q 019828 107 HPCNECKGTGETINDKDRCPQCKGEK 132 (335)
Q Consensus 107 ~~C~~C~G~G~~i~~~~~C~~C~G~g 132 (335)
..|..|+-..........|+.|.+..
T Consensus 71 ~~C~~Cg~~~~~~~~~~~CP~Cgs~~ 96 (113)
T PF01155_consen 71 ARCRDCGHEFEPDEFDFSCPRCGSPD 96 (113)
T ss_dssp EEETTTS-EEECHHCCHH-SSSSSS-
T ss_pred EECCCCCCEEecCCCCCCCcCCcCCC
Confidence 44555555444444444566665553
No 122
>PRK02935 hypothetical protein; Provisional
Probab=30.53 E-value=25 Score=28.43 Aligned_cols=25 Identities=24% Similarity=0.662 Sum_probs=19.8
Q ss_pred eeecCCCCCceeEEEcCcCCCCCCC
Q 019828 105 MQHPCNECKGTGETINDKDRCPQCK 129 (335)
Q Consensus 105 ~~~~C~~C~G~G~~i~~~~~C~~C~ 129 (335)
.+..||.|+-.-+..-+.|.|-.|+
T Consensus 69 vqV~CP~C~K~TKmLGrvD~CM~C~ 93 (110)
T PRK02935 69 VQVICPSCEKPTKMLGRVDACMHCN 93 (110)
T ss_pred eeeECCCCCchhhhccceeecCcCC
Confidence 3577888887777777789999996
No 123
>PLN00208 translation initiation factor (eIF); Provisional
Probab=30.43 E-value=1.9e+02 Score=24.75 Aligned_cols=58 Identities=14% Similarity=0.301 Sum_probs=37.5
Q ss_pred CcEEEEecCCCcEEEEEeCCCcc-----ccCCcEEEEcCCCCCCCCCCCCCCceEEEEEEeCCCCCCHHHHHHHHhh
Q 019828 204 GFQFVITHLDGRQLLIKSQPGEV-----VKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETV 275 (335)
Q Consensus 204 G~~~~i~~ldGr~l~v~ip~g~v-----i~~g~~~~i~geGmP~~~~~~~~GdL~i~f~V~fP~~l~~~~~~~L~~~ 275 (335)
+..+.|...||......+| |.. |++|+.+.|. +..+ ...+|+++-+ ++++|...|++.
T Consensus 44 n~~~~V~c~dG~~rLa~Ip-GKmRKrIWI~~GD~VlVe---l~~~--d~~KgdIv~r--------y~~dqvr~Lkk~ 106 (145)
T PLN00208 44 NGRCEALCIDGTKRLCHIR-GKMRKKVWIAAGDIILVG---LRDY--QDDKADVILK--------YMPDEARLLKAY 106 (145)
T ss_pred CCEEEEEECCCCEEEEEEe-ccceeeEEecCCCEEEEE---ccCC--CCCEEEEEEE--------cCHHHHHHHHHc
Confidence 3467788888887766665 542 5677777776 3222 1246776544 567888888775
No 124
>cd05793 S1_IF1A S1_IF1A: Translation initiation factor IF1A, also referred to as eIF1A in eukaryotes and aIF1A in archaea, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. IF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors. This protein family is only found in eukaryotes and archaea.
Probab=30.43 E-value=2.2e+02 Score=21.53 Aligned_cols=60 Identities=13% Similarity=0.273 Sum_probs=33.9
Q ss_pred hCCcEEEEecCCCcEEEEEeCCCcc-----ccCCcEEEEcCCCCCCCCCCCCCCceEEEEEEeCCCCCCHHHHHHHHhh
Q 019828 202 LCGFQFVITHLDGRQLLIKSQPGEV-----VKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETV 275 (335)
Q Consensus 202 l~G~~~~i~~ldGr~l~v~ip~g~v-----i~~g~~~~i~geGmP~~~~~~~~GdL~i~f~V~fP~~l~~~~~~~L~~~ 275 (335)
+-+..+.|...||..+...+| |.. |++|+.+.+. +..+ ...+|+++-+ ++++|...|++.
T Consensus 10 ~g~~~~~V~~~~g~~~la~i~-gK~rk~iwI~~GD~V~Ve---~~~~--d~~kg~Iv~r--------~~~~~v~~L~~~ 74 (77)
T cd05793 10 LGNGRLEVRCFDGKKRLCRIR-GKMRKRVWINEGDIVLVA---PWDF--QDDKADIIYK--------YTPDEVRWLKRK 74 (77)
T ss_pred cCCCEEEEEECCCCEEEEEEc-hhhcccEEEcCCCEEEEE---eccc--cCCEEEEEEE--------cCHHHHHHHHHc
Confidence 344567888888988777775 442 3445555554 1111 1235555433 457777777653
No 125
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=30.37 E-value=70 Score=26.07 Aligned_cols=6 Identities=33% Similarity=1.370 Sum_probs=3.2
Q ss_pred cCCCCC
Q 019828 81 KCSGCQ 86 (335)
Q Consensus 81 ~C~~C~ 86 (335)
.|..|.
T Consensus 72 ~C~~Cg 77 (115)
T TIGR00100 72 ECEDCS 77 (115)
T ss_pred EcccCC
Confidence 455554
No 126
>PRK05580 primosome assembly protein PriA; Validated
Probab=30.25 E-value=66 Score=34.44 Aligned_cols=64 Identities=25% Similarity=0.551 Sum_probs=40.6
Q ss_pred hhcCceeEEeeee-----eEecCCCCCCCccCCCcccCCCCCCccEEEEEEecCCccceeeeecCCCCCceeEEEcCcCC
Q 019828 50 LYNGTSKKLSLSR-----NVICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDR 124 (335)
Q Consensus 50 ~y~G~~~~i~~~r-----~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~i~~~~~ 124 (335)
+-.|...=+-++| .+.|..|.- ...|+.|.+. +... . ......|..|+-+ ......
T Consensus 363 l~~g~qvll~~nrrGy~~~~~C~~Cg~-------~~~C~~C~~~-l~~h--~------~~~~l~Ch~Cg~~---~~~~~~ 423 (679)
T PRK05580 363 LERGEQVLLFLNRRGYAPFLLCRDCGW-------VAECPHCDAS-LTLH--R------FQRRLRCHHCGYQ---EPIPKA 423 (679)
T ss_pred HHcCCeEEEEEcCCCCCCceEhhhCcC-------ccCCCCCCCc-eeEE--C------CCCeEECCCCcCC---CCCCCC
Confidence 3356566666665 588999963 3589999983 3221 1 1123679999754 223478
Q ss_pred CCCCCCce
Q 019828 125 CPQCKGEK 132 (335)
Q Consensus 125 C~~C~G~g 132 (335)
|+.|.+..
T Consensus 424 Cp~Cg~~~ 431 (679)
T PRK05580 424 CPECGSTD 431 (679)
T ss_pred CCCCcCCe
Confidence 99998763
No 127
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=30.10 E-value=22 Score=29.12 Aligned_cols=26 Identities=27% Similarity=0.662 Sum_probs=19.0
Q ss_pred eeecCCCCCceeEEEcCcCCCCCCCC
Q 019828 105 MQHPCNECKGTGETINDKDRCPQCKG 130 (335)
Q Consensus 105 ~~~~C~~C~G~G~~i~~~~~C~~C~G 130 (335)
.+..||.|+=.-+..-+.|.|-.|+-
T Consensus 68 v~V~CP~C~K~TKmLGr~D~CM~C~~ 93 (114)
T PF11023_consen 68 VQVECPNCGKQTKMLGRVDACMHCKE 93 (114)
T ss_pred eeeECCCCCChHhhhchhhccCcCCC
Confidence 35678888776666666788999963
No 128
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=29.68 E-value=38 Score=31.87 Aligned_cols=32 Identities=28% Similarity=0.407 Sum_probs=25.8
Q ss_pred eeccCCHHHHhCC-cEEEEecCCCcEEEEEeCC
Q 019828 192 VEHTLSLTEALCG-FQFVITHLDGRQLLIKSQP 223 (335)
Q Consensus 192 ~~~~I~l~eAl~G-~~~~i~~ldGr~l~v~ip~ 223 (335)
|...|-|+||++| +..+|+|.|+..=.+.|.|
T Consensus 18 YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTp 50 (311)
T KOG0315|consen 18 YDHTIRFWQALTGICSRTIQHPDSQVNRLEITP 50 (311)
T ss_pred CcceeeeeehhcCeEEEEEecCccceeeEEEcC
Confidence 3468999999999 5899999999866666655
No 129
>PRK06393 rpoE DNA-directed RNA polymerase subunit E''; Validated
Probab=29.37 E-value=45 Score=24.56 Aligned_cols=28 Identities=29% Similarity=0.611 Sum_probs=16.8
Q ss_pred ecCCCCCceeEEEcCcCCCCCCCCceEEEeeE
Q 019828 107 HPCNECKGTGETINDKDRCPQCKGEKVIQEKK 138 (335)
Q Consensus 107 ~~C~~C~G~G~~i~~~~~C~~C~G~g~~~e~k 138 (335)
..|..|+ .+.+.+.|+.|.+.-++.+-.
T Consensus 6 ~AC~~C~----~i~~~~~Cp~Cgs~~~S~~w~ 33 (64)
T PRK06393 6 RACKKCK----RLTPEKTCPVHGDEKTTTEWF 33 (64)
T ss_pred hhHhhCC----cccCCCcCCCCCCCcCCcCcc
Confidence 4566665 233566888888765454433
No 130
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=29.25 E-value=49 Score=32.40 Aligned_cols=32 Identities=44% Similarity=0.903 Sum_probs=21.7
Q ss_pred eeeEecCCCCCCCccCCCcccCCCCCCccEEEEEEecCCccce
Q 019828 61 SRNVICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQ 103 (335)
Q Consensus 61 ~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~ 103 (335)
.-.+.|..|+|.| |+.|++.|-+-. +|-||+.
T Consensus 258 Evdv~~~~~~g~g--------c~~ck~~~WiEi---lG~Gmv~ 289 (339)
T PRK00488 258 EVDVSCFKCGGKG--------CRVCKGTGWLEI---LGCGMVH 289 (339)
T ss_pred EEEEEEeccCCCc--------ccccCCCCceEE---eccCccC
Confidence 3457788898776 888999985332 4555653
No 131
>PRK12336 translation initiation factor IF-2 subunit beta; Provisional
Probab=28.49 E-value=1.1e+02 Score=27.55 Aligned_cols=87 Identities=18% Similarity=0.305 Sum_probs=42.1
Q ss_pred ccCCCCCCccEEEEEEecCCccceeeeecCCCCCceeEEEcCcCCCCCCCCceEEEeeEEEEEEecCCCcCCCeEEecCC
Q 019828 80 MKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGE 159 (335)
Q Consensus 80 ~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~~~e~k~l~V~Ip~G~~~g~~i~~~g~ 159 (335)
..|+.|+-.-..+... + ......|..|+....+-..+..= =...--+.....++|.|..-...|.-|.-. +
T Consensus 99 V~C~~C~~pdT~l~k~--~----~~~~l~C~aCGa~~~v~~~~~~~--~~~~~~~~~~e~~~v~Ie~l~~~G~GVak~-~ 169 (201)
T PRK12336 99 VICSECGLPDTRLVKE--D----RVLMLRCDACGAHRPVKKRKASS--ETQREAIEEGKTYEVEITGTGRKGDGVAKK-G 169 (201)
T ss_pred EECCCCCCCCcEEEEc--C----CeEEEEcccCCCCcccccccccc--CCCCCCCccCCEEEEEEEEccCCCceEEEE-C
Confidence 5788888877655321 1 11235677777665543211100 000001112234566666666666665432 2
Q ss_pred CCC--CCCCCcccEEEEE
Q 019828 160 ADE--APDTVTGDIVFVL 175 (335)
Q Consensus 160 G~~--~~~~~~GDliv~i 175 (335)
|.. .++..|||.+-+-
T Consensus 170 g~~vfV~galpGE~V~vr 187 (201)
T PRK12336 170 KYTIFVPGAKKGEVVKVK 187 (201)
T ss_pred CEEEEeCCCCCCCEEEEE
Confidence 221 3667788876443
No 132
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=28.03 E-value=24 Score=32.69 Aligned_cols=14 Identities=36% Similarity=0.847 Sum_probs=11.4
Q ss_pred ccCCCCCCccEEEE
Q 019828 80 MKCSGCQGSGMKVS 93 (335)
Q Consensus 80 ~~C~~C~G~G~~~~ 93 (335)
.+|++|+|+|++-+
T Consensus 39 vtCPTCqGtGrIP~ 52 (238)
T PF07092_consen 39 VTCPTCQGTGRIPR 52 (238)
T ss_pred CcCCCCcCCccCCc
Confidence 58999999998644
No 133
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=27.88 E-value=75 Score=22.97 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=17.6
Q ss_pred EEEEeCCCCCCHHHHHHHHhhC
Q 019828 255 HFTVDFPESLSPDQCKMLETVL 276 (335)
Q Consensus 255 ~f~V~fP~~l~~~~~~~L~~~l 276 (335)
..+..||.+||++++..+-.+-
T Consensus 17 ~~eL~Fp~~ls~~eRriih~la 38 (60)
T cd02639 17 RDELAFPSSLSPAERRIVHLLA 38 (60)
T ss_pred ceEEEcCCCCCHHHHHHHHHHH
Confidence 5677899999999987776553
No 134
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=27.57 E-value=76 Score=25.81 Aligned_cols=12 Identities=25% Similarity=0.792 Sum_probs=6.3
Q ss_pred cCCCCCceeEEE
Q 019828 108 PCNECKGTGETI 119 (335)
Q Consensus 108 ~C~~C~G~G~~i 119 (335)
.||.|++....+
T Consensus 88 ~CP~Cgs~~~~i 99 (113)
T PRK12380 88 QCPHCHGERLRV 99 (113)
T ss_pred cCcCCCCCCcEE
Confidence 366666554433
No 135
>smart00350 MCM minichromosome maintenance proteins.
Probab=27.48 E-value=2.8e+02 Score=28.53 Aligned_cols=14 Identities=0% Similarity=0.176 Sum_probs=8.7
Q ss_pred CCCHHHHHHHHhhC
Q 019828 263 SLSPDQCKMLETVL 276 (335)
Q Consensus 263 ~l~~~~~~~L~~~l 276 (335)
.+++.....|.+++
T Consensus 311 ~l~~~~q~~L~e~m 324 (509)
T smart00350 311 KMDDSDRTAIHEAM 324 (509)
T ss_pred hCCHHHHHHHHHHH
Confidence 36666666666665
No 136
>PRK14051 negative regulator GrlR; Provisional
Probab=26.64 E-value=2.4e+02 Score=23.03 Aligned_cols=70 Identities=11% Similarity=0.067 Sum_probs=38.5
Q ss_pred ccEEEEEEeecCCCcccccccceeeccCC--HHHHhCCcEEEEecCCCcEEEEEeCCCccccCCcEEEEcCCCCCC
Q 019828 169 GDIVFVLQQKEHPKFKRKGDDLFVEHTLS--LTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPM 242 (335)
Q Consensus 169 GDliv~i~~~~h~~F~R~g~dL~~~~~I~--l~eAl~G~~~~i~~ldGr~l~v~ip~g~vi~~g~~~~i~geGmP~ 242 (335)
-|+++.+.-..|+.-.--+-+--+.+.|+ +.+.=.++++.-.--+..+|.|.+- .+.=..+.|++-|||.
T Consensus 48 ~~iilhvhR~n~ei~SVf~~eqdy~L~i~kk~~sn~~~~~l~~HV~~Nekl~vdv~----akFI~~LvI~~~~~~~ 119 (123)
T PRK14051 48 EDIILHVHRYNYEIPSVLNIEQDYQLVIPKKVLSNDNNLTLHCHVRGNEKLFVDVY----AKFIEPLVIKNTGMPQ 119 (123)
T ss_pred ceeEEEEEecccccccccCccccEEEecchhheeCCCCeEEEEEEcCCcEEEEEEe----eeeeeeeEEccCCCcc
Confidence 56777777666655443333333444455 3333334443333335666666543 2334568899999995
No 137
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=26.19 E-value=90 Score=32.14 Aligned_cols=62 Identities=27% Similarity=0.568 Sum_probs=38.9
Q ss_pred cCceeEEeeee-----eEecCCCCCCCccCCCcccCCCCCCccEEEEEEecCCccceeeeecCCCCCceeEEEcCcCCCC
Q 019828 52 NGTSKKLSLSR-----NVICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCP 126 (335)
Q Consensus 52 ~G~~~~i~~~r-----~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~i~~~~~C~ 126 (335)
.|...=+-++| .+.|..|.- ...|+.|.+. +... +. .....|..|+-+ ...-..|+
T Consensus 197 ~g~qvLvflnrrGya~~~~C~~Cg~-------~~~C~~C~~~-l~~h--~~------~~~l~Ch~Cg~~---~~~~~~Cp 257 (505)
T TIGR00595 197 AGEQSILFLNRRGYSKNLLCRSCGY-------ILCCPNCDVS-LTYH--KK------EGKLRCHYCGYQ---EPIPKTCP 257 (505)
T ss_pred cCCcEEEEEeCCcCCCeeEhhhCcC-------ccCCCCCCCc-eEEe--cC------CCeEEcCCCcCc---CCCCCCCC
Confidence 46555555555 378999953 3589999874 2221 11 124679999743 33347999
Q ss_pred CCCCce
Q 019828 127 QCKGEK 132 (335)
Q Consensus 127 ~C~G~g 132 (335)
.|.+..
T Consensus 258 ~C~s~~ 263 (505)
T TIGR00595 258 QCGSED 263 (505)
T ss_pred CCCCCe
Confidence 998764
No 138
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=25.15 E-value=1e+02 Score=21.27 Aligned_cols=11 Identities=27% Similarity=0.724 Sum_probs=7.1
Q ss_pred cCCCCCCccEE
Q 019828 81 KCSGCQGSGMK 91 (335)
Q Consensus 81 ~C~~C~G~G~~ 91 (335)
.|+.|.|....
T Consensus 3 PCPfCGg~~~~ 13 (53)
T TIGR03655 3 PCPFCGGADVY 13 (53)
T ss_pred CCCCCCCccee
Confidence 57777766653
No 139
>PF01333 Apocytochr_F_C: Apocytochrome F, C-terminal; InterPro: IPR002325 The cytochrome b6f integral membrane protein complex transfers electrons between the two reaction centre complexes of oxygenic photosynthetic membranes, and participates in formation of the transmembrane electrochemical proton gradient by also transferring protons from the stromal to the internal lumen compartment []. The cytochrome b6f complex contains four polypeptides: cytochrome f (285 aa); cytochrome b6 (215 aa); Rieske iron-sulphur protein (179 aa); and subunit IV (160 aa) []. In its structure and functions, the cytochrome b6f complex bears extensive analogy to the cytochrome bc1 complex of mitochondria and photosynthetic purple bacteria; cytochrome f (cyt f) plays a role analogous to that of cytochrome c1, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0015979 photosynthesis, 0031361 integral to thylakoid membrane; PDB: 2E75_C 2E74_C 1VF5_P 2D2C_P 2E76_C 1TU2_B 2ZT9_C 1E2V_A 1CFM_A 1E2W_B ....
Probab=25.08 E-value=98 Score=25.50 Aligned_cols=57 Identities=19% Similarity=0.307 Sum_probs=33.1
Q ss_pred CcEEEEecCCCcEEEEEeCCCc--cccCCcEEEEcCCCCCCCCCCC--CCCceEEEEEEeCCCC
Q 019828 204 GFQFVITHLDGRQLLIKSQPGE--VVKPDQFKAINDEGMPMYQRPF--MRGKLYIHFTVDFPES 263 (335)
Q Consensus 204 G~~~~i~~ldGr~l~v~ip~g~--vi~~g~~~~i~geGmP~~~~~~--~~GdL~i~f~V~fP~~ 263 (335)
|..++|.+-||+.+.-+||+|= +++.|+.+. .|-|...+|+ .+|-.=.++-..=|.+
T Consensus 23 g~~vtI~~~dG~~v~~~IP~GpeLiV~eG~~V~---~dqpLT~nPNVGGFGQ~e~EIVLQ~p~R 83 (118)
T PF01333_consen 23 GYEVTIETSDGETVVETIPAGPELIVSEGQSVK---ADQPLTNNPNVGGFGQGETEIVLQNPNR 83 (118)
T ss_dssp EEEEEEETTTSEEEEEEEESSS-BS--TT-EET---TT-BSB------EEEEEEEEEEE--SHH
T ss_pred CEEEEEECCCCCEEEEecCCCCeEEEcCCCEEe---cCCcccCCCCcCccCcCceEEEeecccH
Confidence 5679999999999888999873 456676663 3556655553 4666656665555543
No 140
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=24.89 E-value=89 Score=21.93 Aligned_cols=32 Identities=25% Similarity=0.475 Sum_probs=16.3
Q ss_pred ccCCCCCCccEEEEEEecCC--ccceeeeecCCCCCc
Q 019828 80 MKCSGCQGSGMKVSIRHLGP--SMIQQMQHPCNECKG 114 (335)
Q Consensus 80 ~~C~~C~G~G~~~~~~~~gp--g~~~q~~~~C~~C~G 114 (335)
..|+-| |.-.+......+. ++. ..+.|..|+.
T Consensus 4 kPCPFC-G~~~~~~~~~~~~~~~~~--~~V~C~~Cga 37 (61)
T PF14354_consen 4 KPCPFC-GSADVLIRQDEGFDYGMY--YYVECTDCGA 37 (61)
T ss_pred cCCCCC-CCcceEeecccCCCCCCE--EEEEcCCCCC
Confidence 467888 6665544433332 111 2355777654
No 141
>PF08273 Prim_Zn_Ribbon: Zinc-binding domain of primase-helicase; InterPro: IPR013237 This entry is represented by bacteriophage T7 Gp4. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a zinc binding domain found in the N-terminal region of the bacteriophage T7 Gp4 and P4 alpha protein. P4 is a multifunctional protein with origin recognition, helicase and primase activities [, , ].; GO: 0003896 DNA primase activity, 0004386 helicase activity, 0008270 zinc ion binding; PDB: 1NUI_B.
Probab=24.81 E-value=35 Score=22.63 Aligned_cols=14 Identities=29% Similarity=0.579 Sum_probs=7.0
Q ss_pred eeEecCCCCCCCcc
Q 019828 62 RNVICTKCKGKGSK 75 (335)
Q Consensus 62 r~~~C~~C~G~G~~ 75 (335)
+...|+.|.|+...
T Consensus 2 ~h~pCP~CGG~DrF 15 (40)
T PF08273_consen 2 KHGPCPICGGKDRF 15 (40)
T ss_dssp EEE--TTTT-TTTE
T ss_pred CCCCCCCCcCcccc
Confidence 45678888776653
No 142
>PF02426 MIase: Muconolactone delta-isomerase; InterPro: IPR003464 This small enzyme forms a homodecameric complex, that catalyses the third step in the catabolism of catechol to succinate- and acetyl-coa in the beta-ketoadipate pathway (5.3.3.4 from EC). The protein has a ferredoxin-like fold according to SCOP.; GO: 0006725 cellular aromatic compound metabolic process
Probab=24.78 E-value=1.2e+02 Score=23.88 Aligned_cols=23 Identities=22% Similarity=0.622 Sum_probs=18.5
Q ss_pred eEEEEEEeCCCCCCHHHHHHHHh
Q 019828 252 LYIHFTVDFPESLSPDQCKMLET 274 (335)
Q Consensus 252 L~i~f~V~fP~~l~~~~~~~L~~ 274 (335)
.+|++.|++|..+++++.+.|+.
T Consensus 3 flv~m~v~~P~~~~~~~~~~~~a 25 (91)
T PF02426_consen 3 FLVRMTVNVPPDMPPEEVDRLKA 25 (91)
T ss_pred EEEEEEeeCCCCCCHHHHHHHHH
Confidence 36899999999999887666643
No 143
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=24.75 E-value=77 Score=25.82 Aligned_cols=42 Identities=17% Similarity=0.390 Sum_probs=23.2
Q ss_pred hhcCceeEEeee-eeEecCCCCCCCccCCCcccCCCCCCccEE
Q 019828 50 LYNGTSKKLSLS-RNVICTKCKGKGSKSGASMKCSGCQGSGMK 91 (335)
Q Consensus 50 ~y~G~~~~i~~~-r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~ 91 (335)
+..|+...|... -...|..|+-.-........||.|.+....
T Consensus 56 ~~ega~L~I~~~p~~~~C~~Cg~~~~~~~~~~~CP~Cgs~~~~ 98 (115)
T TIGR00100 56 VAEGAKLNIEDEPVECECEDCSEEVSPEIDLYRCPKCHGIMLQ 98 (115)
T ss_pred ccCCCEEEEEeeCcEEEcccCCCEEecCCcCccCcCCcCCCcE
Confidence 344544444333 346899998544333333467777776543
No 144
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=24.50 E-value=1.4e+02 Score=21.24 Aligned_cols=14 Identities=43% Similarity=0.880 Sum_probs=8.0
Q ss_pred CCCCCCCCceEEEe
Q 019828 123 DRCPQCKGEKVIQE 136 (335)
Q Consensus 123 ~~C~~C~G~g~~~e 136 (335)
.-|++|+-+-.+..
T Consensus 29 lyCpKCK~EtlI~v 42 (55)
T PF14205_consen 29 LYCPKCKQETLIDV 42 (55)
T ss_pred ccCCCCCceEEEEe
Confidence 45777775544433
No 145
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=24.40 E-value=63 Score=26.19 Aligned_cols=40 Identities=13% Similarity=0.375 Sum_probs=15.9
Q ss_pred hhcCceeEEeeee-eEecCCCCCCCccCCCcccCCCCCCcc
Q 019828 50 LYNGTSKKLSLSR-NVICTKCKGKGSKSGASMKCSGCQGSG 89 (335)
Q Consensus 50 ~y~G~~~~i~~~r-~~~C~~C~G~G~~~~~~~~C~~C~G~G 89 (335)
++.|+...+.... ...|..|+-..........||.|.+..
T Consensus 56 ~~e~a~L~Ie~~p~~~~C~~Cg~~~~~~~~~~~CP~Cgs~~ 96 (113)
T PF01155_consen 56 ILEGAELEIEEVPARARCRDCGHEFEPDEFDFSCPRCGSPD 96 (113)
T ss_dssp TTTT-EEEEEEE--EEEETTTS-EEECHHCCHH-SSSSSS-
T ss_pred CccCCEEEEEecCCcEECCCCCCEEecCCCCCCCcCCcCCC
Confidence 3444444443332 345666655543322223455555544
No 146
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=24.16 E-value=33 Score=24.95 Aligned_cols=37 Identities=22% Similarity=0.401 Sum_probs=22.7
Q ss_pred EEEEecCCCcEEEEEeCCCccccCCcEEEEcCCCCCC
Q 019828 206 QFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPM 242 (335)
Q Consensus 206 ~~~i~~ldGr~l~v~ip~g~vi~~g~~~~i~geGmP~ 242 (335)
.+.++||.|+.|.|.|.|.+-+.-=...+-.-+|+|.
T Consensus 2 ~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp 38 (70)
T KOG0005|consen 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPP 38 (70)
T ss_pred eeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCc
Confidence 4788999999999988776432111111223467774
No 147
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=23.67 E-value=44 Score=36.52 Aligned_cols=56 Identities=20% Similarity=0.470 Sum_probs=35.5
Q ss_pred CCceEEEEEeehhhhhcCc---------eeEEeeeee-EecCCCCCCCccC------C-CcccCCCCCCccEE
Q 019828 36 GEDVIHPLKVSLEDLYNGT---------SKKLSLSRN-VICTKCKGKGSKS------G-ASMKCSGCQGSGMK 91 (335)
Q Consensus 36 g~d~~~~l~vtLee~y~G~---------~~~i~~~r~-~~C~~C~G~G~~~------~-~~~~C~~C~G~G~~ 91 (335)
.+....-+.-.+.++|.+. .-.|+++.. --|.+|+|.|... . -..+|..|+|+-+-
T Consensus 693 NPATYtg~Fd~IR~lFA~tpeAK~rGyk~grFSFNvkGGRCe~C~GdG~ikIeM~FLpdVyv~CevC~GkRYn 765 (935)
T COG0178 693 NPATYTGVFDDIRELFAGTPEAKARGYKPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCEVCHGKRYN 765 (935)
T ss_pred CccchhcchHHHHHHHhcChHHHHcCCCcccccccCCCcCCccccCCceEEEEeccCCCceeeCCCcCCcccc
Confidence 4444444555566666532 234555544 5799999999743 1 23699999998764
No 148
>TIGR03221 muco_delta muconolactone delta-isomerase. Members of this protein family are muconolactone delta-isomerase (EC 5.3.3.4), the CatC protein of the ortho cleavage pathway for metabolizing aromatic compounds by way of catechol.
Probab=23.13 E-value=1.4e+02 Score=23.59 Aligned_cols=22 Identities=9% Similarity=0.434 Sum_probs=18.0
Q ss_pred EEEEEEeCCCCCCHHHHHHHHh
Q 019828 253 YIHFTVDFPESLSPDQCKMLET 274 (335)
Q Consensus 253 ~i~f~V~fP~~l~~~~~~~L~~ 274 (335)
.|++.|++|..+++++++.|+.
T Consensus 3 lV~m~V~~P~~~~~~~~~~i~a 24 (90)
T TIGR03221 3 HVRMDVNLPVDMPAEKAAAIKA 24 (90)
T ss_pred EEEEEeeCCCCCCHHHHHHHHH
Confidence 5899999999999887766643
No 149
>PF03589 Antiterm: Antitermination protein; InterPro: IPR003222 This entry consists of antitermination proteins found in bacteriophages, such as protein Q from phage lambda, and some bacterial homologues. Protein Q positively regulates expression of the phage late gene operon by binding to the bacterial host RNA polymerase (RNAP) and modifying it. The modified RNAP transcribes through termination sites that otherwise prevent expression of the regulated genes [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=22.46 E-value=20 Score=28.36 Aligned_cols=13 Identities=31% Similarity=0.848 Sum_probs=8.1
Q ss_pred ccCCCCCCccEEE
Q 019828 80 MKCSGCQGSGMKV 92 (335)
Q Consensus 80 ~~C~~C~G~G~~~ 92 (335)
..|..|+|.|..+
T Consensus 6 ~~c~~c~g~g~al 18 (95)
T PF03589_consen 6 DSCRRCAGDGAAL 18 (95)
T ss_pred CCcCccCCcceec
Confidence 3577777777543
No 150
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=22.22 E-value=1.1e+02 Score=26.59 Aligned_cols=46 Identities=24% Similarity=0.391 Sum_probs=30.7
Q ss_pred EEEecCCCcEEEEEeCCCccccCCcEEEEcCCCCCCCCCCC---CCCceEEEEEEe
Q 019828 207 FVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPF---MRGKLYIHFTVD 259 (335)
Q Consensus 207 ~~i~~ldGr~l~v~ip~g~vi~~g~~~~i~geGmP~~~~~~---~~GdL~i~f~V~ 259 (335)
+-|.+-+|-.|.|-+ | + ++..+.|+|+-..-..+ +.||++++|.++
T Consensus 63 igi~t~~GvEiLiHi--G--i---DTV~L~GegF~~~v~~Gd~Vk~Gd~Li~fDl~ 111 (156)
T COG2190 63 IGIETDEGVEILIHI--G--I---DTVKLNGEGFESLVKEGDKVKAGDPLLEFDLD 111 (156)
T ss_pred EEEEcCCCcEEEEEe--c--e---eeEEECCcceEEEeeCCCEEccCCEEEEECHH
Confidence 456666777666654 4 2 56778899886542222 589999999643
No 151
>PF02963 EcoRI: Restriction endonuclease EcoRI; InterPro: IPR004221 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry represents restriction endonucleases EcoRI, which requires magnesium as a cofactor. EcoRI recognises the DNA sequence GAATTC and cleaves after G-1 [].; GO: 0000287 magnesium ion binding, 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system; PDB: 1ERI_A 1CL8_A 1QRH_A 1QPS_A 1CKQ_A 1QC9_B 1QRI_A 2OXV_A.
Probab=21.91 E-value=43 Score=30.52 Aligned_cols=37 Identities=22% Similarity=0.349 Sum_probs=22.0
Q ss_pred EEEEecCCCcEEEEEeCCCccccCCcEEEEcCCCCCCC
Q 019828 206 QFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMY 243 (335)
Q Consensus 206 ~~~i~~ldGr~l~v~ip~g~vi~~g~~~~i~geGmP~~ 243 (335)
++.|+-+|||.+.+....|. +.-=+.+.-.+.|||+.
T Consensus 162 ~~~v~rpdgrvv~l~ynsg~-lnrldrltaanygmpin 198 (257)
T PF02963_consen 162 TISVTRPDGRVVTLEYNSGM-LNRLDRLTAANYGMPIN 198 (257)
T ss_dssp -EEEEETTSEEEEE-TT-TT-T--GGGTGGGGTT--SS
T ss_pred ceeeeCCCCcEEEEEeccch-hhHHHHHhhhhcCCccc
Confidence 68899999998887665553 33334555678999995
No 152
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=21.87 E-value=42 Score=19.78 Aligned_cols=21 Identities=33% Similarity=0.752 Sum_probs=11.7
Q ss_pred ecCCCCCceeEEEcCcCCCCCCC
Q 019828 107 HPCNECKGTGETINDKDRCPQCK 129 (335)
Q Consensus 107 ~~C~~C~G~G~~i~~~~~C~~C~ 129 (335)
..|+.|+- .+.....-|+.|.
T Consensus 3 ~~Cp~Cg~--~~~~~~~fC~~CG 23 (26)
T PF13248_consen 3 MFCPNCGA--EIDPDAKFCPNCG 23 (26)
T ss_pred CCCcccCC--cCCcccccChhhC
Confidence 45666654 2333445677774
No 153
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=21.07 E-value=1e+02 Score=20.07 Aligned_cols=6 Identities=33% Similarity=1.126 Sum_probs=3.9
Q ss_pred CCCCCC
Q 019828 82 CSGCQG 87 (335)
Q Consensus 82 C~~C~G 87 (335)
||.|+.
T Consensus 2 CP~C~~ 7 (41)
T PF13453_consen 2 CPRCGT 7 (41)
T ss_pred cCCCCc
Confidence 677755
No 154
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=20.84 E-value=70 Score=20.22 Aligned_cols=11 Identities=55% Similarity=1.247 Sum_probs=6.0
Q ss_pred cCCCCCCccEE
Q 019828 81 KCSGCQGSGMK 91 (335)
Q Consensus 81 ~C~~C~G~G~~ 91 (335)
.|+.|++.+..
T Consensus 5 ~C~~C~~~~i~ 15 (33)
T PF08792_consen 5 KCSKCGGNGIV 15 (33)
T ss_pred EcCCCCCCeEE
Confidence 45556655543
No 155
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=20.81 E-value=1.2e+02 Score=20.17 Aligned_cols=11 Identities=36% Similarity=0.778 Sum_probs=5.5
Q ss_pred CCCCCCCCceE
Q 019828 123 DRCPQCKGEKV 133 (335)
Q Consensus 123 ~~C~~C~G~g~ 133 (335)
.+|+.|...-.
T Consensus 22 ~~Cp~CG~~~~ 32 (46)
T PRK00398 22 VRCPYCGYRIL 32 (46)
T ss_pred eECCCCCCeEE
Confidence 45666654433
No 156
>PTZ00329 eukaryotic translation initiation factor 1A; Provisional
Probab=20.27 E-value=3.9e+02 Score=23.21 Aligned_cols=58 Identities=12% Similarity=0.273 Sum_probs=35.6
Q ss_pred CcEEEEecCCCcEEEEEeCCCcc-----ccCCcEEEEcCCCCCCCCCCCCCCceEEEEEEeCCCCCCHHHHHHHHhh
Q 019828 204 GFQFVITHLDGRQLLIKSQPGEV-----VKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETV 275 (335)
Q Consensus 204 G~~~~i~~ldGr~l~v~ip~g~v-----i~~g~~~~i~geGmP~~~~~~~~GdL~i~f~V~fP~~l~~~~~~~L~~~ 275 (335)
+..+.|...||..+...|| |.. |.+|+++.|. +..+ ...+|+++-+ ++++|...|++.
T Consensus 44 n~~f~V~c~dG~~rLa~I~-GKmRK~IWI~~GD~VlVe---l~~y--d~~KgdIi~R--------y~~devr~Lk~~ 106 (155)
T PTZ00329 44 NGRLEAYCFDGVKRLCHIR-GKMRKRVWINIGDIILVS---LRDF--QDSKADVILK--------YTPDEARALKQH 106 (155)
T ss_pred CCEEEEEECCCCEEEEEee-ccceeeEEecCCCEEEEe---ccCC--CCCEEEEEEE--------cCHHHHHHHHHc
Confidence 3467777777776665554 442 5677777774 2222 1246776655 567888888764
No 157
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=20.24 E-value=1.7e+02 Score=19.73 Aligned_cols=15 Identities=20% Similarity=0.563 Sum_probs=7.8
Q ss_pred CCCCCCCCceEEEee
Q 019828 123 DRCPQCKGEKVIQEK 137 (335)
Q Consensus 123 ~~C~~C~G~g~~~e~ 137 (335)
.+|+.|..+=..+++
T Consensus 20 irC~~CG~rIlyK~R 34 (44)
T smart00659 20 VRCRECGYRILYKKR 34 (44)
T ss_pred eECCCCCceEEEEeC
Confidence 456666555444443
Done!