Query 019828
Match_columns 335
No_of_seqs 238 out of 1795
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 07:42:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019828.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019828hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nlt_A Protein YDJ1, mitochond 100.0 7.8E-67 2.7E-71 483.0 24.5 241 31-273 6-248 (248)
2 3agx_A DNAJ homolog subfamily 100.0 1E-48 3.4E-53 345.8 21.3 180 36-278 2-181 (181)
3 2q2g_A HSP40 protein, heat sho 100.0 4.4E-47 1.5E-51 335.0 23.4 178 35-277 2-180 (180)
4 3lz8_A Putative chaperone DNAJ 100.0 2E-45 6.7E-50 352.2 21.6 200 8-277 115-315 (329)
5 1c3g_A Heat shock protein 40; 100.0 2.1E-43 7.2E-48 308.8 18.7 169 37-273 1-170 (170)
6 1xao_A YDJ1, mitochondrial pro 100.0 5.5E-30 1.9E-34 211.7 12.9 118 182-302 1-120 (121)
7 3i38_A Putative chaperone DNAJ 99.9 8.3E-27 2.8E-31 189.2 9.6 94 178-277 2-95 (109)
8 2ctt_A DNAJ homolog subfamily 99.8 1.4E-22 4.7E-27 163.0 1.1 102 36-144 1-103 (104)
9 1exk_A DNAJ protein; extended 99.5 1.3E-14 4.3E-19 110.4 5.1 77 53-136 1-78 (79)
10 1nlt_A Protein YDJ1, mitochond 98.9 3.4E-10 1.2E-14 103.9 3.9 50 138-187 189-243 (248)
11 3i38_A Putative chaperone DNAJ 98.8 5.1E-09 1.7E-13 84.3 6.2 81 34-190 9-89 (109)
12 1xao_A YDJ1, mitochondrial pro 98.7 2.5E-08 8.4E-13 81.7 6.3 83 34-190 4-91 (121)
13 1c3g_A Heat shock protein 40; 98.5 9.4E-08 3.2E-12 82.8 6.7 73 188-263 1-81 (170)
14 2q2g_A HSP40 protein, heat sho 98.5 1.2E-07 4E-12 82.9 7.1 75 187-264 3-88 (180)
15 3lz8_A Putative chaperone DNAJ 98.5 1E-07 3.5E-12 90.9 6.0 76 184-262 137-225 (329)
16 3agx_A DNAJ homolog subfamily 98.4 5.8E-07 2E-11 78.6 8.7 74 187-264 2-88 (181)
17 3lcz_A YCZA, inhibitor of trap 97.9 1.6E-06 5.4E-11 60.5 0.4 34 102-137 5-38 (53)
18 3pmq_A Decaheme cytochrome C M 97.4 8.4E-07 2.9E-11 91.3 -11.0 78 40-117 168-257 (669)
19 1exk_A DNAJ protein; extended 97.4 4.4E-05 1.5E-09 57.1 1.1 45 62-119 27-77 (79)
20 2ctt_A DNAJ homolog subfamily 97.3 8.9E-05 3.1E-09 58.6 2.5 45 63-120 45-95 (104)
21 2bx9_A Anti-trap, AT, tryptoph 96.7 0.0012 3.9E-08 45.9 3.1 29 63-93 9-37 (53)
22 2bx9_A Anti-trap, AT, tryptoph 96.5 0.00091 3.1E-08 46.4 1.9 27 107-135 10-36 (53)
23 3lcz_A YCZA, inhibitor of trap 96.5 0.0016 5.6E-08 45.1 3.0 28 63-92 9-36 (53)
24 1ltl_A DNA replication initiat 63.8 36 0.0012 30.6 9.5 10 107-116 157-166 (279)
25 2vl6_A SSO MCM N-TER, minichro 59.6 24 0.0008 31.6 7.4 63 107-177 169-236 (268)
26 2lll_A Lamin-B2; immunoglobuli 46.0 32 0.0011 28.0 5.3 50 202-254 48-98 (139)
27 3jt0_A Lamin-B1; structural ge 45.2 30 0.001 28.4 5.0 51 202-255 52-102 (144)
28 3hn9_A Lamin-B1; structural ge 38.6 64 0.0022 25.5 5.9 39 201-240 38-76 (123)
29 3pmq_A Decaheme cytochrome C M 36.5 4.1 0.00014 41.9 -1.9 47 80-133 192-257 (669)
30 1ifr_A Lamin A/C; immunoglobul 35.7 65 0.0022 25.4 5.5 51 201-254 32-83 (121)
31 3vdz_A Ubiquitin-40S ribosomal 32.6 36 0.0012 26.1 3.5 40 186-225 14-56 (111)
32 1ufg_A Lamin A, nuclear lamin; 30.6 92 0.0031 25.6 5.8 52 201-255 63-115 (151)
33 2bx2_L Ribonuclease E, RNAse E 29.7 12 0.00042 37.2 0.3 31 89-119 390-421 (517)
34 3p8b_A DNA-directed RNA polyme 29.0 45 0.0016 24.6 3.2 30 107-140 24-53 (81)
35 2apo_B Ribosome biogenesis pro 27.6 31 0.0011 24.0 2.0 21 107-131 7-27 (60)
36 1sif_A Ubiquitin; hydrophobic 27.4 50 0.0017 23.9 3.3 25 201-225 6-30 (88)
37 2vf7_A UVRA2, excinuclease ABC 25.7 28 0.00094 36.8 2.1 32 81-116 640-671 (842)
38 1mli_A Muconolactone isomerase 25.1 73 0.0025 24.3 3.9 22 253-274 4-25 (96)
39 2kdx_A HYPA, hydrogenase/ureas 24.2 91 0.0031 24.1 4.5 40 50-89 59-100 (119)
40 2dgy_A MGC11102 protein; EIF-1 24.2 2.4E+02 0.0081 21.8 6.8 61 202-275 25-90 (111)
41 2r6f_A Excinuclease ABC subuni 23.5 39 0.0013 36.3 2.7 32 81-116 755-786 (972)
42 1gmu_A UREE; metallochaperone; 21.8 1.5E+02 0.005 24.0 5.4 45 192-237 16-60 (143)
43 3gne_A Val-1; alginate lyase, 21.2 2.1E+02 0.0072 25.5 6.7 49 209-265 31-86 (252)
44 1ryq_A DNA-directed RNA polyme 21.1 1.1E+02 0.0037 21.8 3.9 28 106-137 11-38 (69)
No 1
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=100.00 E-value=7.8e-67 Score=482.96 Aligned_cols=241 Identities=45% Similarity=0.871 Sum_probs=220.6
Q ss_pred CCCCCCCceEEEEEeehhhhhcCceeEEeeeeeEecCCCCCCCccCCCcccCCCCCCccEEEEEEecCCccceeeeecCC
Q 019828 31 RRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCN 110 (335)
Q Consensus 31 ~~~~~g~d~~~~l~vtLee~y~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~ 110 (335)
+++++++|+.+.|.|||||+|+|++++|.+.+.+.|++|+|+|++.++..+|+.|+|+|+++..+++|| |++|++++|+
T Consensus 6 ~~~~~g~d~~~~l~vslee~~~G~~k~i~~~r~~~C~~C~G~G~~~g~~~~C~~C~G~G~~~~~~~~g~-~~~~~~~~C~ 84 (248)
T 1nlt_A 6 RGPQRGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGP-MIQRFQTECD 84 (248)
T ss_dssp --CCBCCCEEEEEEECTTHHHHCEEEEEEEEEEEECTTTTTCSBSTTTCCCCTTSSSSSCEEEEEESSS-EEEEEECSCT
T ss_pred CCCCCCCCEEEEEEecHHHhcCCceEEEEeeEEEeCCCCcCccCCCCCCccCCCCCCCcEEEEEEecCc-eEEEEEEcCC
Confidence 345689999999999999999999999999999999999999999887789999999999999999999 9999999999
Q ss_pred CCCceeEEEcCcCCCCCCCCceEEEeeEEEEEEecCCCcCCCeEEecCCCCCCCCCCcccEEEEEEeecCCCcccccccc
Q 019828 111 ECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDL 190 (335)
Q Consensus 111 ~C~G~G~~i~~~~~C~~C~G~g~~~e~k~l~V~Ip~G~~~g~~i~~~g~G~~~~~~~~GDliv~i~~~~h~~F~R~g~dL 190 (335)
.|+|+|+++.++++|+.|+|++++.+.++|+|+|||||++|++|+|+|+|++.++..||||||+|++++|+.|+|+|+||
T Consensus 85 ~C~G~G~~i~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~~~~g~~GDl~v~i~v~~h~~F~R~G~DL 164 (248)
T 1nlt_A 85 VCHGTGDIIDPKDRCKSCNGKKVENERKILEVHVEPGMKDGQRIVFKGEADQAPDVIPGDVVFIVSERPHKSFKRDGDDL 164 (248)
T ss_dssp TCSSSSSCCCTTSBCSSSTTSCEEEEEEEEEEEECTTCCTTCEEEETTCSCCCTTCBCCCEEEEEEECCCSSCEEETTEE
T ss_pred CCCCcCEEeccCCCCcccCCCceEeeeEEEEEEECCCccCCCEEEEeeeecCCCCCCcceEEEEEEEecCccceeeCCEE
Confidence 99999999988899999999999999999999999999999999999999999988999999999999999999999999
Q ss_pred eeeccCCHHHHhCCcEEEEecCCCcEEEEEeCCCccccCCcEEEEcCCCCCCCCCCCCCCceEEEEEEeCCCC--CCHHH
Q 019828 191 FVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPES--LSPDQ 268 (335)
Q Consensus 191 ~~~~~I~l~eAl~G~~~~i~~ldGr~l~v~ip~g~vi~~g~~~~i~geGmP~~~~~~~~GdL~i~f~V~fP~~--l~~~~ 268 (335)
|++++|||+|||+|++++|+||||+.+.|++|||+|++||++++|+|+|||..+++ .+|||||+|+|+||++ |+++|
T Consensus 165 ~~~~~Isl~eAllG~~i~v~tldG~~~~i~ip~g~vt~~g~~~rl~g~Gmp~~~~~-~~GDL~V~~~V~~P~~~~Ls~~q 243 (248)
T 1nlt_A 165 VYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYG-GYGNLIIKFTIKDPENHFTSEEN 243 (248)
T ss_dssp EEEEEEEHHHHHHCBCCEEECSSSCEEECCBCTTTTCSTTCEEEETTCSCBCSSSC-SBCCEEEEEEEECCC--------
T ss_pred EEEEEeCHHHHhcCCEEEEeCCCCCEEEEEeCCCCeeCCCeEEEEcCCCCccCCCC-CcCCEEEEEEEECCCCCCCCHHH
Confidence 99999999999999999999999998999999999999999999999999987554 6899999999999999 99999
Q ss_pred HHHHH
Q 019828 269 CKMLE 273 (335)
Q Consensus 269 ~~~L~ 273 (335)
+++|+
T Consensus 244 ~~~l~ 248 (248)
T 1nlt_A 244 LKKLE 248 (248)
T ss_dssp -----
T ss_pred HHhhC
Confidence 88874
No 2
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A
Probab=100.00 E-value=1e-48 Score=345.78 Aligned_cols=180 Identities=39% Similarity=0.681 Sum_probs=161.8
Q ss_pred CCceEEEEEeehhhhhcCceeEEeeeeeEecCCCCCCCccCCCcccCCCCCCccEEEEEEecCCccceeeeecCCCCCce
Q 019828 36 GEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGT 115 (335)
Q Consensus 36 g~d~~~~l~vtLee~y~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~ 115 (335)
++|+.+.|.|||||+|+|+++++.+.+
T Consensus 2 ~~d~~~~l~islee~~~G~~k~i~i~~----------------------------------------------------- 28 (181)
T 3agx_A 2 DPPVTHDLRVSLEEIYSGCTKKMKISH----------------------------------------------------- 28 (181)
T ss_dssp ----CEEEEECHHHHHHCEEEEEEEEE-----------------------------------------------------
T ss_pred CCCEEEEEEEEHHHhcCCcEEEEEEec-----------------------------------------------------
Confidence 468999999999999999999997653
Q ss_pred eEEEcCcCCCCCCCCceEEEeeEEEEEEecCCCcCCCeEEecCCCCCCCCCCcccEEEEEEeecCCCcccccccceeecc
Q 019828 116 GETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHT 195 (335)
Q Consensus 116 G~~i~~~~~C~~C~G~g~~~e~k~l~V~Ip~G~~~g~~i~~~g~G~~~~~~~~GDliv~i~~~~h~~F~R~g~dL~~~~~ 195 (335)
+|+.|+|++++.+.+.++|+||||+++|++|+|+|+|++.++..+|||||+|++++|+.|+|+|+|||++++
T Consensus 29 --------~c~~c~G~g~~~~~~~l~V~Ip~G~~~G~~ir~~G~G~~~~~g~~GDl~v~i~~~~h~~F~R~G~DL~~~~~ 100 (181)
T 3agx_A 29 --------KRLNPDGKSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPAR 100 (181)
T ss_dssp --------EEECTTSSCEEEEEEEEEEEECTTCCTTCEEEETTCSCCCSSSCCCCEEEEEEECCCSSCEEETTEEEEEEE
T ss_pred --------ccCCCCCceEEEEeEEEEEEECCCccCCcEEEEeeccccCCCCCcccEEEEEEEeccccceeeCCcEEEEEE
Confidence 133344445667789999999999999999999999999888899999999999999999999999999999
Q ss_pred CCHHHHhCCcEEEEecCCCcEEEEEeCCCccccCCcEEEEcCCCCCCCCCCCCCCceEEEEEEeCCCCCCHHHHHHHHhh
Q 019828 196 LSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETV 275 (335)
Q Consensus 196 I~l~eAl~G~~~~i~~ldGr~l~v~ip~g~vi~~g~~~~i~geGmP~~~~~~~~GdL~i~f~V~fP~~l~~~~~~~L~~~ 275 (335)
|||+|||+|+++.|+||||+.+.|++|++ ++||++++|+|+|||..++++.+|||||+|+|.||++||++|+++|+++
T Consensus 101 Isl~eAllG~~i~v~tldG~~~~i~i~~~--t~~g~~~rl~g~Gmp~~~~~~~~GDL~V~~~V~~P~~ls~~q~~~l~~~ 178 (181)
T 3agx_A 101 ISLREALCGCTVNVPTLDGRTIPVVFKDV--IRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQV 178 (181)
T ss_dssp EEHHHHHHCEEEEEECTTSCEEEEEECSC--CCTTCEEEETTCSCBCSSSTTSBCCEEEEEEEECCSCCCHHHHHHHHHH
T ss_pred cCHHHHhCCCEEEeECCCCCEEEEECCCc--cCCCcEEEECCcCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHHh
Confidence 99999999999999999999899999987 8999999999999998765667999999999999999999999999999
Q ss_pred CCC
Q 019828 276 LPP 278 (335)
Q Consensus 276 lp~ 278 (335)
||.
T Consensus 179 ~~~ 181 (181)
T 3agx_A 179 LPI 181 (181)
T ss_dssp SCC
T ss_pred ccC
Confidence 963
No 3
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=4.4e-47 Score=335.02 Aligned_cols=178 Identities=37% Similarity=0.659 Sum_probs=165.3
Q ss_pred CCCceEEEEEeehhhhhcCceeEEeeeeeEecCCCCCCCccCCCcccCCCCCCccEEEEEEecCCccceeeeecCCCCCc
Q 019828 35 RGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKG 114 (335)
Q Consensus 35 ~g~d~~~~l~vtLee~y~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G 114 (335)
+++|+.+.|.|||||+|+|+++++.+.+.+.|..
T Consensus 2 ~g~d~~~~l~islee~~~G~~k~i~~~~~~~c~~---------------------------------------------- 35 (180)
T 2q2g_A 2 APRSHEVPLLVTLEELYLGKRKKIKVTRKRFIEH---------------------------------------------- 35 (180)
T ss_dssp --CEEEEEEEECHHHHHHCEEEEEEEEEEEEETT----------------------------------------------
T ss_pred CCCCEEEEEEeeHHHhcCCcEEEEEEeEEEecCC----------------------------------------------
Confidence 4789999999999999999999999999988741
Q ss_pred eeEEEcCcCCCCCCCCceEEEeeEEEEEEecCCCcCCCeEEecCCCCC-CCCCCcccEEEEEEeecCCCcccccccceee
Q 019828 115 TGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADE-APDTVTGDIVFVLQQKEHPKFKRKGDDLFVE 193 (335)
Q Consensus 115 ~G~~i~~~~~C~~C~G~g~~~e~k~l~V~Ip~G~~~g~~i~~~g~G~~-~~~~~~GDliv~i~~~~h~~F~R~g~dL~~~ 193 (335)
+++.+.+.++|+|||||++|++|+|+|+|++ .++..+|||||+|++++|+.|+|+|+|||++
T Consensus 36 -----------------g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~g~~gg~~GDl~v~i~~~~h~~F~R~G~DL~~~ 98 (180)
T 2q2g_A 36 -----------------KVRNEENIVEVEIKPGWKDGTKLTYSGEGDQESPGTSPGDLVLIIQTKTHPRFTRDDCHLIMK 98 (180)
T ss_dssp -----------------EEEEEEEEEEEEECTTCCTTCEEEETTCSCCSSTTSCCCEEEEEEEECCCSSCEEETTEEEEE
T ss_pred -----------------ceEEeeEEEEEEECCCCcCCcEEEEeeccCCCCCCCccccEEEEEEEEecccEEEcCCEEEEE
Confidence 2456789999999999999999999999999 7899999999999999999999999999999
Q ss_pred ccCCHHHHhCCcEEEEecCCCcEEEEEeCCCccccCCcEEEEcCCCCCCCCCCCCCCceEEEEEEeCCCCCCHHHHHHHH
Q 019828 194 HTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLE 273 (335)
Q Consensus 194 ~~I~l~eAl~G~~~~i~~ldGr~l~v~ip~g~vi~~g~~~~i~geGmP~~~~~~~~GdL~i~f~V~fP~~l~~~~~~~L~ 273 (335)
++|||+|||+|+++.|+||||+.+.|++|++ ++||++++|+|+|||..++++.+|||||+|+|+||++|+++|+++|+
T Consensus 99 ~~Isl~eAllG~~i~v~tldG~~v~i~ip~~--t~~g~~~rl~g~Gmp~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~~l~ 176 (180)
T 2q2g_A 99 VTIPLVRALTGFTCPVTTLDNRNLQIPIKEI--VNPKTRKIVPNEGMPIKNQPGQKGDLILEFDICFPKSLTPEQKKLIK 176 (180)
T ss_dssp EEEEHHHHHHCEEEEEECTTCCEEEEEECSC--CCTTCEEEETTCSCBCSSSTTCBCCEEEEEEEECCSCCCHHHHHHHH
T ss_pred EEcCHHHHhCCCEEEeeCCCCCEEEEECCCc--cCCCEEEEECCcCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHHHHH
Confidence 9999999999999999999999899999987 89999999999999987656679999999999999999999999999
Q ss_pred hhCC
Q 019828 274 TVLP 277 (335)
Q Consensus 274 ~~lp 277 (335)
++||
T Consensus 177 ~~~p 180 (180)
T 2q2g_A 177 EALD 180 (180)
T ss_dssp HHC-
T ss_pred HhcC
Confidence 9985
No 4
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=100.00 E-value=2e-45 Score=352.17 Aligned_cols=200 Identities=24% Similarity=0.365 Sum_probs=158.8
Q ss_pred CCchhhhhhhcCCCCCCCCCCCCCCCCCCCceEEEEEeehhhhhcCceeEEeeeeeEecCCCCCCCccCCCcccCCCCCC
Q 019828 8 HDPFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGASMKCSGCQG 87 (335)
Q Consensus 8 ~~~~diF~~fFgg~~~~~~~~~~~~~~~g~d~~~~l~vtLee~y~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G 87 (335)
.+|+|||++|||++++ +++.++++++.|+.++|.|||+|+|+|++++|.+++.+.| +.
T Consensus 115 ~~f~diF~~~Fg~~g~---~~~~~~~~~g~Dl~~~l~vsleea~~G~~k~i~i~~~v~~----g~--------------- 172 (329)
T 3lz8_A 115 QDFDDIFSSMFGQQAH---QRRRQHAARGHDLEIEVAVFLEETLAEQTRTISYNLPVYN----VF--------------- 172 (329)
T ss_dssp -------------------------CCCCCCEEEEECCCTTGGGSCEEEEEEEEEEECC----SC---------------
T ss_pred CchhhhhHhhhcCcCC---CCCCCCcCCCCCEEEEEecchhhhhhccceEEEEEEEeec----CC---------------
Confidence 3678999999985321 1112335789999999999999999999999999987632 11
Q ss_pred ccEEEEEEecCCccceeeeecCCCCCceeEEEcCcCCCCCCCCceEEEeeEEEEEEecCCCcCCCeEEecCCCCCCC-CC
Q 019828 88 SGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAP-DT 166 (335)
Q Consensus 88 ~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~~~e~k~l~V~Ip~G~~~g~~i~~~g~G~~~~-~~ 166 (335)
|. ..+...+.++|+||||+++|++|+|+|+|++.+ +.
T Consensus 173 -G~-----------------------------------------v~~~~~~~l~V~IP~Gv~~G~~Irl~G~G~~g~~gg 210 (329)
T 3lz8_A 173 -GM-----------------------------------------IESETPKTLNVKIPAGVVDGQRIRLKGQGTPGENGG 210 (329)
T ss_dssp -C------------------------------------------CCEEEEEEEEEEECTTCCTTCEEEESSCSCCC---C
T ss_pred -eE-----------------------------------------EEEecceEEEEeCCCCCCCCCEEEEcccccCCCCCC
Confidence 11 112335689999999999999999999999875 67
Q ss_pred CcccEEEEEEeecCCCcccccccceeeccCCHHHHhCCcEEEEecCCCcEEEEEeCCCccccCCcEEEEcCCCCCCCCCC
Q 019828 167 VTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRP 246 (335)
Q Consensus 167 ~~GDliv~i~~~~h~~F~R~g~dL~~~~~I~l~eAl~G~~~~i~~ldGr~l~v~ip~g~vi~~g~~~~i~geGmP~~~~~ 246 (335)
.+|||||+|++++|+.|+|+|+||+++++|+|+|||+|++++|+||||+ +.|+||+| ++||++++|+|+|||..
T Consensus 211 ~~GDL~v~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~v~VptLdG~-v~l~ip~g--t~~g~~~rl~G~GmP~~--- 284 (329)
T 3lz8_A 211 PNGDLWLVIHIAPHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKES-ILLTVPPG--SQAGQRLRIKGKGLVSK--- 284 (329)
T ss_dssp CCCCEEEEECCCCCSSCEEETTEEEEEEEECHHHHHHCEEEEECCSSSC-EEEEECTT--CCTTCEEEETTCSCBCS---
T ss_pred CCCcEEEEEEEecCCccEEcCCcEEEEEECCHHHHcCCCeEEEECCCCC-EEEEECCC--CCCCCEEEEcCCCCCCC---
Confidence 8999999999999999999999999999999999999999999999998 69999999 79999999999999975
Q ss_pred CCCCceEEEEEEeCCCCCCHHHHHHHHhhCC
Q 019828 247 FMRGKLYIHFTVDFPESLSPDQCKMLETVLP 277 (335)
Q Consensus 247 ~~~GdL~i~f~V~fP~~l~~~~~~~L~~~lp 277 (335)
..+|||||+|+|+||++|+++|+++|+++..
T Consensus 285 ~~rGDL~v~~~V~~P~~l~~~q~~~l~~~~~ 315 (329)
T 3lz8_A 285 THTGDLFAVIKIVMPTKPDEKARELWQQLAA 315 (329)
T ss_dssp SCBCCEEEEEEECCCSSCCHHHHHHHHHHHH
T ss_pred CCCCCEEEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3699999999999999999999999998864
No 5
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A
Probab=100.00 E-value=2.1e-43 Score=308.79 Aligned_cols=169 Identities=36% Similarity=0.589 Sum_probs=154.0
Q ss_pred CceEEEEEeehhhhhcCceeEEeeeeeEecCCCCCCCccCCCcccCCCCCCccEEEEEEecCCccceeeeecCCCCCcee
Q 019828 37 EDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTG 116 (335)
Q Consensus 37 ~d~~~~l~vtLee~y~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G 116 (335)
+|+.+.|.|||||+|+|+++++.+.+.. + .
T Consensus 1 ~d~~~~l~islee~~~G~~k~i~~~~~~----~------------------~---------------------------- 30 (170)
T 1c3g_A 1 ETVQVNLPVSLEDLFVGKKKSFKIGRKG----P------------------H---------------------------- 30 (170)
T ss_dssp CEEEEEEEECHHHHHHTCEEEEEEEEEE----T------------------T----------------------------
T ss_pred CCEEEEEEeEHHHhhCCcEEEEEEEEec----C------------------C----------------------------
Confidence 4789999999999999999999988751 0 0
Q ss_pred EEEcCcCCCCCCCCceEEEeeEEEEEEecCCCcCCCeEEecCCCC-CCCCCCcccEEEEEEeecCCCcccccccceeecc
Q 019828 117 ETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEAD-EAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHT 195 (335)
Q Consensus 117 ~~i~~~~~C~~C~G~g~~~e~k~l~V~Ip~G~~~g~~i~~~g~G~-~~~~~~~GDliv~i~~~~h~~F~R~g~dL~~~~~ 195 (335)
|.+ +.+.++|+||||+++|++|+|+|+|+ ..++..+|||||+|++++|+.|+|+|+||+++++
T Consensus 31 ---------------G~~-~~~~l~V~Ip~G~~~G~~ir~~g~G~~~~~gg~~GDl~v~i~v~~h~~F~R~G~DL~~~~~ 94 (170)
T 1c3g_A 31 ---------------GAS-EKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPNFKRDGDDLIYTLP 94 (170)
T ss_dssp ---------------TEE-EEEEEEEECCTTCCTTCEEEESSCSSBCSSSSCBCEEEEEEEECCCSSEEEETTEEEEEEC
T ss_pred ---------------CcE-EeEEEEEEeCCCccCCCEEEEeccccCCCCCCccccEEEEEEEccCCccEEeCCcEeEEEE
Confidence 123 67899999999999999999999999 4678899999999999999999999999999999
Q ss_pred CCHHHHhCCcEEEEecCCCcEEEEEeCCCccccCCcEEEEcCCCCCCCCCCCCCCceEEEEEEeCCCCCCHHHHHHHH
Q 019828 196 LSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLE 273 (335)
Q Consensus 196 I~l~eAl~G~~~~i~~ldGr~l~v~ip~g~vi~~g~~~~i~geGmP~~~~~~~~GdL~i~f~V~fP~~l~~~~~~~L~ 273 (335)
|||+|||+|+++.|+||||+.+.|++|++ ++||++++|+|+|||..++++.+|||||+|+|.||++||++|+++|+
T Consensus 95 Isl~eAllG~~~~v~tldG~~~~i~i~~~--t~~g~~~rl~g~G~p~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~~l~ 170 (170)
T 1c3g_A 95 LSFKESLLGFSKTIQTIDGRTLPLSRVQP--VQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYPISLNDAQKRAID 170 (170)
T ss_dssp CBHHHHHHCEEEEEECSSSCEEEEEESSC--CCTTCEEECTTCSCBCSSCTTSBCCEEEEECCBCCSSCCTTHHHHTC
T ss_pred cCHHHHhCCCeEEeeCCCCCEEEEECCCc--cCCCcEEEEeCCCCCcCCCCCCCCCEEEEEEEECCCCCCHHHHHhhC
Confidence 99999999999999999999899999987 89999999999999987656678999999999999999999988763
No 6
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}
Probab=99.96 E-value=5.5e-30 Score=211.72 Aligned_cols=118 Identities=37% Similarity=0.601 Sum_probs=101.9
Q ss_pred CcccccccceeeccCCHHHHhCCcEEEEecCCCcEEEEEeCCCccccCCcEEEEcCCCCCCCCCCCCCCceEEEEEEeCC
Q 019828 182 KFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFP 261 (335)
Q Consensus 182 ~F~R~g~dL~~~~~I~l~eAl~G~~~~i~~ldGr~l~v~ip~g~vi~~g~~~~i~geGmP~~~~~~~~GdL~i~f~V~fP 261 (335)
.|+|+|+||+++++|+|++||+|+++.|+||||+.+.|++|+|+|++||++++|+|+|||..+++ .+|||||+|+|+||
T Consensus 1 ~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~~v~ip~g~v~~~G~~~rl~G~Gmp~~~~~-~~GDL~V~~~V~~P 79 (121)
T 1xao_A 1 SFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYG-GYGNLIIKFTIKFP 79 (121)
T ss_dssp CCEEETTEEEEEEEEEHHHHHHCEEEEEECTTSCEEEEEECTTSCCCTTCEEEETTCSCC-------CCCEEEEEEEECC
T ss_pred CceEECCeEEEEEEcCHHHHhCCCEEEEecCCCCEEEEEeCCCCeeCCCcEEEECCCCCCCCCCC-CCCCEEEEEEEECC
Confidence 49999999999999999999999999999999998999999999999999999999999987554 78999999999999
Q ss_pred CC--CCHHHHHHHHhhCCCCCCCCCccCccccceeeeeecCCh
Q 019828 262 ES--LSPDQCKMLETVLPPRTSVQLTDMELDECEETTLHDVNI 302 (335)
Q Consensus 262 ~~--l~~~~~~~L~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (335)
++ |+++|+++|+++++.++. . .....+++|++.|.++++
T Consensus 80 ~~~~ls~~q~~~l~~l~~~~~~-~-~~~~~~~~ee~~~~~~~~ 120 (121)
T 1xao_A 80 ENHFTSEENLKKLEEILPPRIV-P-AIPKKATVDECVLADFDP 120 (121)
T ss_dssp CTTCSCHHHHHHHHHHSCCCCC-C-CCCTTSCEEEEECEECCC
T ss_pred CCCCCCHHHHHHHHHHcccccc-c-CCCCCCCceEEEeeccCC
Confidence 99 999999999999987653 1 123457788889988876
No 7
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}
Probab=99.94 E-value=8.3e-27 Score=189.18 Aligned_cols=94 Identities=20% Similarity=0.334 Sum_probs=87.6
Q ss_pred ecCCCcccccccceeeccCCHHHHhCCcEEEEecCCCcEEEEEeCCCccccCCcEEEEcCCCCCCCCCCCCCCceEEEEE
Q 019828 178 KEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFT 257 (335)
Q Consensus 178 ~~h~~F~R~g~dL~~~~~I~l~eAl~G~~~~i~~ldGr~l~v~ip~g~vi~~g~~~~i~geGmP~~~~~~~~GdL~i~f~ 257 (335)
++|+.|+|+|+||+++++|||+|||+|+++.|+||||+ +.|++|+| +++|++++|+|+|||.. + .+|||||+|+
T Consensus 2 kph~~F~R~G~DL~~~~~Isl~eAl~G~~i~v~tldG~-~~v~ip~g--~~~G~~~rl~G~G~p~~-~--~~GDL~v~~~ 75 (109)
T 3i38_A 2 NAHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKES-ILLTVPPG--SQAGQRLRIKGKGLVSK-T--HTGDLFAVIK 75 (109)
T ss_dssp --CCCCEEETTEEEEEEEECHHHHHHCEEEEECCSSSC-EEEEECTT--CCTTCEEEETTCSCBCS-S--CBCCEEEEEE
T ss_pred CCCCCeEEECCEEEEEEEcCHHHHhCCCEEEEEcCCCC-EEEeeCCC--cCcCeEEEECCccCCCC-C--CCcCEEEEEE
Confidence 68999999999999999999999999999999999995 89999999 89999999999999983 2 6999999999
Q ss_pred EeCCCCCCHHHHHHHHhhCC
Q 019828 258 VDFPESLSPDQCKMLETVLP 277 (335)
Q Consensus 258 V~fP~~l~~~~~~~L~~~lp 277 (335)
|+||++|+++|+++|++++.
T Consensus 76 V~~P~~Ls~~q~~~l~~l~~ 95 (109)
T 3i38_A 76 IVMPTKPDEKARELWQQLAA 95 (109)
T ss_dssp ECCCSSCCHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 99999999999999999874
No 8
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=1.4e-22 Score=162.97 Aligned_cols=102 Identities=27% Similarity=0.609 Sum_probs=90.2
Q ss_pred CCceEEEEEeehhhhhcCceeEEeeeeeEecCCCCCCCccCCCc-ccCCCCCCccEEEEEEecCCccceeeeecCCCCCc
Q 019828 36 GEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGAS-MKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKG 114 (335)
Q Consensus 36 g~d~~~~l~vtLee~y~G~~~~i~~~r~~~C~~C~G~G~~~~~~-~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G 114 (335)
|.|+.++|.|||||+|+|++++|.+.+.++|++|+|+|++.++. .+|+.|+|+|++...+ |+ + +++.+|+.|+|
T Consensus 1 ~~~~~~~l~vslee~~~G~~~~i~~~~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~~~~~~--G~--~-~~~~~C~~C~G 75 (104)
T 2ctt_A 1 GSSGSSGMELTFNQAAKGVNKEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSGMETINT--GP--F-VMRSTCRRCGG 75 (104)
T ss_dssp CCCCCCCCCCCCSSCCSSSCTTCCSSCCEECSSSSSSSSCTTCCCEECSSSSSSCEEEEEE--TT--E-EEEEECSSSSS
T ss_pred CCceEEEEEEEHHHHcCCCEEEEEeeeeeECCCCcCCccCCCCCCccCCCCCCCEEEEEEe--CC--E-EEEEECCcCCC
Confidence 45788899999999999999999999999999999999988764 7999999999876543 54 3 35689999999
Q ss_pred eeEEEcCcCCCCCCCCceEEEeeEEEEEEe
Q 019828 115 TGETINDKDRCPQCKGEKVIQEKKVLEVIV 144 (335)
Q Consensus 115 ~G~~i~~~~~C~~C~G~g~~~e~k~l~V~I 144 (335)
+|+++. ++|+.|+|.+++.+.+.|+|+|
T Consensus 76 ~G~~i~--~~C~~C~G~G~v~~~k~l~V~~ 103 (104)
T 2ctt_A 76 RGSIII--SPCVVCRGAGQAKQKKRSGPSS 103 (104)
T ss_dssp SSEECS--SCCSSSSSCSEECCCCSSCCSC
T ss_pred cceECC--CcCCCCCCeeEEEEEEEEEEEc
Confidence 999995 9999999999999999998865
No 9
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=99.50 E-value=1.3e-14 Score=110.39 Aligned_cols=77 Identities=30% Similarity=0.758 Sum_probs=65.7
Q ss_pred CceeEEeeeeeEecCCCCCCCccCCCc-ccCCCCCCccEEEEEEecCCccceeeeecCCCCCceeEEEcCcCCCCCCCCc
Q 019828 53 GTSKKLSLSRNVICTKCKGKGSKSGAS-MKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGE 131 (335)
Q Consensus 53 G~~~~i~~~r~~~C~~C~G~G~~~~~~-~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~ 131 (335)
|++++|.|.+.++|+.|+|+|...... .+|+.|+|+|.++..+ |+++ ++.+|+.|+|+|+++. ++|+.|+|.
T Consensus 1 G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----g~~~-~~~~C~~C~G~G~~~~--~~C~~C~G~ 73 (79)
T 1exk_A 1 GVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQ----GFFA-VQQTCPHCQGRGTLIK--DPCNKCHGH 73 (79)
T ss_dssp CTTTSCCCCCEEECGGGTTTSBCSSSCCEECTTTTTSSEEEEEE----TTEE-EEEECTTTTTSSEECS--SBCGGGTTS
T ss_pred CcEEEEEcccceECCCCcccccCCCccCCCCCCCcCeEEEEEEc----CCCE-EeeECcCCCCccEECC--CcCCCCCCe
Confidence 567889999999999999999877654 6899999999876533 4554 6789999999999884 899999999
Q ss_pred eEEEe
Q 019828 132 KVIQE 136 (335)
Q Consensus 132 g~~~e 136 (335)
+++.+
T Consensus 74 G~~~~ 78 (79)
T 1exk_A 74 GRVER 78 (79)
T ss_dssp SEEEC
T ss_pred EEEee
Confidence 99865
No 10
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=98.94 E-value=3.4e-10 Score=103.95 Aligned_cols=50 Identities=16% Similarity=0.278 Sum_probs=38.3
Q ss_pred EEEEEEecCC--CcCCCeEEecCCCCCCCCC-CcccEEEEEEeecCCC--ccccc
Q 019828 138 KVLEVIVEKG--MQNGQKITFPGEADEAPDT-VTGDIVFVLQQKEHPK--FKRKG 187 (335)
Q Consensus 138 k~l~V~Ip~G--~~~g~~i~~~g~G~~~~~~-~~GDliv~i~~~~h~~--F~R~g 187 (335)
+.++|.||+| +++|++++|+|+|.+..+. ..|||||+|++.-+.. +..+-
T Consensus 189 ~~~~i~ip~g~vt~~g~~~rl~g~Gmp~~~~~~~GDL~V~~~V~~P~~~~Ls~~q 243 (248)
T 1nlt_A 189 DWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIKDPENHFTSEEN 243 (248)
T ss_dssp CEEECCBCTTTTCSTTCEEEETTCSCBCSSSCSBCCEEEEEEEECCC--------
T ss_pred CEEEEEeCCCCeeCCCeEEEEcCCCCccCCCCCcCCEEEEEEEECCCCCCCCHHH
Confidence 4799999999 9999999999999985432 6799999999996654 44433
No 11
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}
Probab=98.81 E-value=5.1e-09 Score=84.31 Aligned_cols=81 Identities=21% Similarity=0.235 Sum_probs=65.8
Q ss_pred CCCCceEEEEEeehhhhhcCceeEEeeeeeEecCCCCCCCccCCCcccCCCCCCccEEEEEEecCCccceeeeecCCCCC
Q 019828 34 RRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECK 113 (335)
Q Consensus 34 ~~g~d~~~~l~vtLee~y~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~ 113 (335)
++|.|+..++.|||.|++.|.++++...
T Consensus 9 R~G~DL~~~~~Isl~eAl~G~~i~v~tl---------------------------------------------------- 36 (109)
T 3i38_A 9 IVGHNLEIVLPLAPWEAALGAKVTVPTL---------------------------------------------------- 36 (109)
T ss_dssp EETTEEEEEEEECHHHHHHCEEEEECCS----------------------------------------------------
T ss_pred EECCEEEEEEEcCHHHHhCCCEEEEEcC----------------------------------------------------
Confidence 4688999999999999999998776521
Q ss_pred ceeEEEcCcCCCCCCCCceEEEeeEEEEEEecCCCcCCCeEEecCCCCCCCCCCcccEEEEEEeecCCCcccccccc
Q 019828 114 GTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDL 190 (335)
Q Consensus 114 G~G~~i~~~~~C~~C~G~g~~~e~k~l~V~Ip~G~~~g~~i~~~g~G~~~~~~~~GDliv~i~~~~h~~F~R~g~dL 190 (335)
...++|.||+|+++|++++++|+|.+..+ .+|||||+|++.-+.....+...|
T Consensus 37 -----------------------dG~~~v~ip~g~~~G~~~rl~G~G~p~~~-~~GDL~v~~~V~~P~~Ls~~q~~~ 89 (109)
T 3i38_A 37 -----------------------KESILLTVPPGSQAGQRLRIKGKGLVSKT-HTGDLFAVIKIVMPTKPDEKAREL 89 (109)
T ss_dssp -----------------------SSCEEEEECTTCCTTCEEEETTCSCBCSS-CBCCEEEEEEECCCSSCCHHHHHH
T ss_pred -----------------------CCCEEEeeCCCcCcCeEEEECCccCCCCC-CCcCEEEEEEEECCCCCCHHHHHH
Confidence 01368999999999999999999998754 799999999999776655444333
No 12
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}
Probab=98.68 E-value=2.5e-08 Score=81.75 Aligned_cols=83 Identities=17% Similarity=0.222 Sum_probs=63.6
Q ss_pred CCCCceEEEEEeehhhhhcCceeEEeeeeeEecCCCCCCCccCCCcccCCCCCCccEEEEEEecCCccceeeeecCCCCC
Q 019828 34 RRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECK 113 (335)
Q Consensus 34 ~~g~d~~~~l~vtLee~y~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~ 113 (335)
++|.|+..++.|||.+++.|.++++..-
T Consensus 4 R~G~DL~~~~~Isl~eAllG~~i~v~tl---------------------------------------------------- 31 (121)
T 1xao_A 4 RDGDDLVYEAEIDLLTAIAGGEFALEHV---------------------------------------------------- 31 (121)
T ss_dssp EETTEEEEEEEEEHHHHHHCEEEEEECT----------------------------------------------------
T ss_pred EECCeEEEEEEcCHHHHhCCCEEEEecC----------------------------------------------------
Confidence 4688999999999999999998776411
Q ss_pred ceeEEEcCcCCCCCCCCceEEEeeEEEEEEecCC--CcCCCeEEecCCCCCCCCC-CcccEEEEEEeecCCC--cccccc
Q 019828 114 GTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKG--MQNGQKITFPGEADEAPDT-VTGDIVFVLQQKEHPK--FKRKGD 188 (335)
Q Consensus 114 G~G~~i~~~~~C~~C~G~g~~~e~k~l~V~Ip~G--~~~g~~i~~~g~G~~~~~~-~~GDliv~i~~~~h~~--F~R~g~ 188 (335)
..+.+.|+||+| +++|++++++|+|.+..+. ..|||||++++.-+.. +..+..
T Consensus 32 ----------------------dG~~~~v~ip~g~v~~~G~~~rl~G~Gmp~~~~~~~GDL~V~~~V~~P~~~~ls~~q~ 89 (121)
T 1xao_A 32 ----------------------SGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIKFPENHFTSEENL 89 (121)
T ss_dssp ----------------------TSCEEEEEECTTSCCCTTCEEEETTCSCC------CCCEEEEEEEECCCTTCSCHHHH
T ss_pred ----------------------CCCEEEEEeCCCCeeCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCCCHHHH
Confidence 123578999999 9999999999999986433 6899999999997665 555444
Q ss_pred cc
Q 019828 189 DL 190 (335)
Q Consensus 189 dL 190 (335)
+|
T Consensus 90 ~~ 91 (121)
T 1xao_A 90 KK 91 (121)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 13
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A
Probab=98.55 E-value=9.4e-08 Score=82.76 Aligned_cols=73 Identities=18% Similarity=0.136 Sum_probs=60.0
Q ss_pred ccceeeccCCHHHHhCCcEEEEecC----CC----cEEEEEeCCCccccCCcEEEEcCCCCCCCCCCCCCCceEEEEEEe
Q 019828 188 DDLFVEHTLSLTEALCGFQFVITHL----DG----RQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVD 259 (335)
Q Consensus 188 ~dL~~~~~I~l~eAl~G~~~~i~~l----dG----r~l~v~ip~g~vi~~g~~~~i~geGmP~~~~~~~~GdL~i~f~V~ 259 (335)
.|+.+++.|||.||+.|.+..|..- +| +.+.|+||+| +++|+.++++|+|-+.. ..+..|||||.++|+
T Consensus 1 ~d~~~~l~islee~~~G~~k~i~~~~~~~~G~~~~~~l~V~Ip~G--~~~G~~ir~~g~G~~~~-~gg~~GDl~v~i~v~ 77 (170)
T 1c3g_A 1 ETVQVNLPVSLEDLFVGKKKSFKIGRKGPHGASEKTQIDIQLKPG--WKAGTKITYKNQGDYNP-QTGRRKTLQFVIQEK 77 (170)
T ss_dssp CEEEEEEEECHHHHHHTCEEEEEEEEEETTTEEEEEEEEEECCTT--CCTTCEEEESSCSSBCS-SSSCBCEEEEEEEEC
T ss_pred CCEEEEEEeEHHHhhCCcEEEEEEEEecCCCcEEeEEEEEEeCCC--ccCCCEEEEeccccCCC-CCCccccEEEEEEEc
Confidence 3789999999999999998777632 23 7899999999 89999999999998643 244689999999997
Q ss_pred CCCC
Q 019828 260 FPES 263 (335)
Q Consensus 260 fP~~ 263 (335)
-.+.
T Consensus 78 ~h~~ 81 (170)
T 1c3g_A 78 SHPN 81 (170)
T ss_dssp CCSS
T ss_pred cCCc
Confidence 4433
No 14
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}
Probab=98.54 E-value=1.2e-07 Score=82.89 Aligned_cols=75 Identities=16% Similarity=0.093 Sum_probs=60.7
Q ss_pred cccceeeccCCHHHHhCCcEEEEecC-----------CCcEEEEEeCCCccccCCcEEEEcCCCCCCCCCCCCCCceEEE
Q 019828 187 GDDLFVEHTLSLTEALCGFQFVITHL-----------DGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIH 255 (335)
Q Consensus 187 g~dL~~~~~I~l~eAl~G~~~~i~~l-----------dGr~l~v~ip~g~vi~~g~~~~i~geGmP~~~~~~~~GdL~i~ 255 (335)
+.|+.+++.|||.||+.|.+..|..- ..+.|.|+|||| ++.|+.++++|+|-+.. ..+..|||||.
T Consensus 3 g~d~~~~l~islee~~~G~~k~i~~~~~~~c~~g~~~~~~~l~V~Ip~G--~~~G~~ir~~g~G~~g~-~gg~~GDl~v~ 79 (180)
T 2q2g_A 3 PRSHEVPLLVTLEELYLGKRKKIKVTRKRFIEHKVRNEENIVEVEIKPG--WKDGTKLTYSGEGDQES-PGTSPGDLVLI 79 (180)
T ss_dssp -CEEEEEEEECHHHHHHCEEEEEEEEEEEEETTEEEEEEEEEEEEECTT--CCTTCEEEETTCSCCSS-TTSCCCEEEEE
T ss_pred CCCEEEEEEeeHHHhcCCcEEEEEEeEEEecCCceEEeeEEEEEEECCC--CcCCcEEEEeeccCCCC-CCCccccEEEE
Confidence 77999999999999999998777632 246799999999 89999999999998732 23468999999
Q ss_pred EEEeCCCCC
Q 019828 256 FTVDFPESL 264 (335)
Q Consensus 256 f~V~fP~~l 264 (335)
++|+-.+.+
T Consensus 80 i~~~~h~~F 88 (180)
T 2q2g_A 80 IQTKTHPRF 88 (180)
T ss_dssp EEECCCSSC
T ss_pred EEEEecccE
Confidence 999743333
No 15
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=98.50 E-value=1e-07 Score=90.86 Aligned_cols=76 Identities=22% Similarity=0.217 Sum_probs=60.4
Q ss_pred ccccccceeeccCCHHHHhCCcEEEEecC------C-------CcEEEEEeCCCccccCCcEEEEcCCCCCCCCCCCCCC
Q 019828 184 KRKGDDLFVEHTLSLTEALCGFQFVITHL------D-------GRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRG 250 (335)
Q Consensus 184 ~R~g~dL~~~~~I~l~eAl~G~~~~i~~l------d-------Gr~l~v~ip~g~vi~~g~~~~i~geGmP~~~~~~~~G 250 (335)
.++|.||.+++.|+|.||+.|.+..|..- . .+.|.|+|||| +++|++++++|+|.|.. +.+..|
T Consensus 137 ~~~g~Dl~~~l~vsleea~~G~~k~i~i~~~v~~g~G~v~~~~~~~l~V~IP~G--v~~G~~Irl~G~G~~g~-~gg~~G 213 (329)
T 3lz8_A 137 AARGHDLEIEVAVFLEETLAEQTRTISYNLPVYNVFGMIESETPKTLNVKIPAG--VVDGQRIRLKGQGTPGE-NGGPNG 213 (329)
T ss_dssp CCCCCCEEEEECCCTTGGGSCEEEEEEEEEEECCSCC-CCEEEEEEEEEEECTT--CCTTCEEEESSCSCCC----CCCC
T ss_pred cCCCCCEEEEEecchhhhhhccceEEEEEEEeecCCeEEEEecceEEEEeCCCC--CCCCCEEEEcccccCCC-CCCCCC
Confidence 35789999999999999999987665421 2 35689999999 89999999999999865 234689
Q ss_pred ceEEEEEEeCCC
Q 019828 251 KLYIHFTVDFPE 262 (335)
Q Consensus 251 dL~i~f~V~fP~ 262 (335)
||||+++|+-.+
T Consensus 214 DL~v~I~v~~h~ 225 (329)
T 3lz8_A 214 DLWLVIHIAPHP 225 (329)
T ss_dssp CEEEEECCCCCS
T ss_pred cEEEEEEEecCC
Confidence 999999987433
No 16
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A
Probab=98.43 E-value=5.8e-07 Score=78.55 Aligned_cols=74 Identities=16% Similarity=0.133 Sum_probs=58.1
Q ss_pred cccceeeccCCHHHHhCCcEEEEecC------CC-------cEEEEEeCCCccccCCcEEEEcCCCCCCCCCCCCCCceE
Q 019828 187 GDDLFVEHTLSLTEALCGFQFVITHL------DG-------RQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLY 253 (335)
Q Consensus 187 g~dL~~~~~I~l~eAl~G~~~~i~~l------dG-------r~l~v~ip~g~vi~~g~~~~i~geGmP~~~~~~~~GdL~ 253 (335)
+.|+.+++.|||.||+.|.+..|.-- .| +.|.|+||+| ++.|+.++++|+|-+.. .+..||||
T Consensus 2 ~~d~~~~l~islee~~~G~~k~i~i~~~c~~c~G~g~~~~~~~l~V~Ip~G--~~~G~~ir~~G~G~~~~--~g~~GDl~ 77 (181)
T 3agx_A 2 DPPVTHDLRVSLEEIYSGCTKKMKISHKRLNPDGKSIRNEDKILTIEVKKG--WKEGTKITFPKEGDQTS--NNIPADIV 77 (181)
T ss_dssp ----CEEEEECHHHHHHCEEEEEEEEEEEECTTSSCEEEEEEEEEEEECTT--CCTTCEEEETTCSCCCS--SSCCCCEE
T ss_pred CCCEEEEEEEEHHHhcCCcEEEEEEecccCCCCCceEEEEeEEEEEEECCC--ccCCcEEEEeeccccCC--CCCcccEE
Confidence 46899999999999999998776521 34 6799999999 89999999999998765 24689999
Q ss_pred EEEEEeCCCCC
Q 019828 254 IHFTVDFPESL 264 (335)
Q Consensus 254 i~f~V~fP~~l 264 (335)
|.++|+-.+.+
T Consensus 78 v~i~~~~h~~F 88 (181)
T 3agx_A 78 FVLKDKPHNIF 88 (181)
T ss_dssp EEEEECCCSSC
T ss_pred EEEEEeccccc
Confidence 99999744434
No 17
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=97.93 E-value=1.6e-06 Score=60.54 Aligned_cols=34 Identities=29% Similarity=0.828 Sum_probs=30.1
Q ss_pred ceeeeecCCCCCceeEEEcCcCCCCCCCCceEEEee
Q 019828 102 IQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEK 137 (335)
Q Consensus 102 ~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~~~e~ 137 (335)
.||++.+|+.|+|+|+++. ++|+.|+|+|++.+.
T Consensus 5 ~qq~~~~C~~C~GsG~~i~--~~C~~C~G~G~v~~~ 38 (53)
T 3lcz_A 5 TDDLETTCPNCNGSGREEP--EPCPKCLGKGVILTA 38 (53)
T ss_dssp HHHHEEECTTTTTSCEETT--EECTTTTTSSEEECH
T ss_pred cCceeccCcCCcccccCCC--CcCCCCCCcEEEEEE
Confidence 3667899999999999996 999999999998764
No 18
>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis}
Probab=97.37 E-value=8.4e-07 Score=91.33 Aligned_cols=78 Identities=17% Similarity=0.230 Sum_probs=57.2
Q ss_pred EEEEEeehhhhhcCceeEEeeeeeEecCCCCCCCccCCC----cccCCCCCCccEEEE--------EEecCCccceeeee
Q 019828 40 IHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGA----SMKCSGCQGSGMKVS--------IRHLGPSMIQQMQH 107 (335)
Q Consensus 40 ~~~l~vtLee~y~G~~~~i~~~r~~~C~~C~G~G~~~~~----~~~C~~C~G~G~~~~--------~~~~gpg~~~q~~~ 107 (335)
.+.+.++|+|+..|.++++.+.+...|..|+|+|++.+. ..+|+.|+|+..... .+.+=.|.+-+...
T Consensus 168 ~~~l~i~feeA~~G~~k~i~v~~~~~C~tCHGsGA~~Gt~~~~~~tC~tCHGs~~~~~~~~~~~~~iH~iH~G~fP~~~~ 247 (669)
T 3pmq_A 168 ITNQHYDWQSSGNMLAYTRNLVSIDTCNSCHSNLAFHGGRYNQVETCVTCHNSKKVSNAADIFPQMIHSKHLTGFPQSIS 247 (669)
T ss_dssp SCCCEEEEECSSSSCCCCCCCCCSHHHHHHHSSCCTTTTTSCSSSCSTTTSSTTTCCCSSCSHHHHHHHHTTSSCSSCTT
T ss_pred eEEEEEEhHHhhCCCceEEEeccCCcCCCCCCCCCcCCccCcCCccCCCCCCCcccCCccccccceeeeeeccCCCCccC
Confidence 467889999999999999999999999999999998875 368999999931100 00110112223456
Q ss_pred cCCCCCceeE
Q 019828 108 PCNECKGTGE 117 (335)
Q Consensus 108 ~C~~C~G~G~ 117 (335)
.|..|+..+.
T Consensus 248 ~C~~CH~~~~ 257 (669)
T 3pmq_A 248 NCQTCHADNP 257 (669)
T ss_dssp CCTTTSCCCT
T ss_pred cchhhcCCcc
Confidence 7999998764
No 19
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=97.35 E-value=4.4e-05 Score=57.14 Aligned_cols=45 Identities=33% Similarity=0.848 Sum_probs=35.5
Q ss_pred eeEecCCCCCCCccCC---C---cccCCCCCCccEEEEEEecCCccceeeeecCCCCCceeEEE
Q 019828 62 RNVICTKCKGKGSKSG---A---SMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETI 119 (335)
Q Consensus 62 r~~~C~~C~G~G~~~~---~---~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~i 119 (335)
....|+.|+|+|.... . ..+|+.|+|+|.++ ..+|+.|+|.|.+.
T Consensus 27 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-------------~~~C~~C~G~G~~~ 77 (79)
T 1exk_A 27 QPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLI-------------KDPCNKCHGHGRVE 77 (79)
T ss_dssp CCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEEC-------------SSBCGGGTTSSEEE
T ss_pred cCCCCCCCcCeEEEEEEcCCCEEeeECcCCCCccEEC-------------CCcCCCCCCeEEEe
Confidence 3568999999996532 1 24899999999753 47899999999874
No 20
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.31 E-value=8.9e-05 Score=58.61 Aligned_cols=45 Identities=31% Similarity=0.806 Sum_probs=35.6
Q ss_pred eEecCCCCCCCccC---CC---cccCCCCCCccEEEEEEecCCccceeeeecCCCCCceeEEEc
Q 019828 63 NVICTKCKGKGSKS---GA---SMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETIN 120 (335)
Q Consensus 63 ~~~C~~C~G~G~~~---~~---~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~i~ 120 (335)
...|+.|+|+|... +. ..+|+.|+|+|.++ ..+|+.|+|+|.+..
T Consensus 45 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i-------------~~~C~~C~G~G~v~~ 95 (104)
T 2ctt_A 45 VQHCHYCGGSGMETINTGPFVMRSTCRRCGGRGSII-------------ISPCVVCRGAGQAKQ 95 (104)
T ss_dssp CEECSSSSSSCEEEEEETTEEEEEECSSSSSSSEEC-------------SSCCSSSSSCSEECC
T ss_pred CccCCCCCCCEEEEEEeCCEEEEEECCcCCCcceEC-------------CCcCCCCCCeeEEEE
Confidence 46799999999642 22 25899999999754 478999999998764
No 21
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=96.65 E-value=0.0012 Score=45.89 Aligned_cols=29 Identities=34% Similarity=0.920 Sum_probs=20.0
Q ss_pred eEecCCCCCCCccCCCcccCCCCCCccEEEE
Q 019828 63 NVICTKCKGKGSKSGASMKCSGCQGSGMKVS 93 (335)
Q Consensus 63 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~ 93 (335)
...|+.|+|+|.... .+|+.|+|+|.+..
T Consensus 9 ~~~C~~C~GsG~~~~--~~C~~C~G~G~v~~ 37 (53)
T 2bx9_A 9 EVACPKCERAGEIEG--TPCPACSGKGVILT 37 (53)
T ss_dssp EEECTTTTTSSEETT--EECTTTTTSSEEEC
T ss_pred cccCCCCcceeccCC--CCCccCCCCccEEE
Confidence 357888888887642 56777777777653
No 22
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=96.54 E-value=0.00091 Score=46.41 Aligned_cols=27 Identities=37% Similarity=0.886 Sum_probs=13.3
Q ss_pred ecCCCCCceeEEEcCcCCCCCCCCceEEE
Q 019828 107 HPCNECKGTGETINDKDRCPQCKGEKVIQ 135 (335)
Q Consensus 107 ~~C~~C~G~G~~i~~~~~C~~C~G~g~~~ 135 (335)
.+|+.|+|+|.++. .+|+.|+|.|.+.
T Consensus 10 ~~C~~C~GsG~~~~--~~C~~C~G~G~v~ 36 (53)
T 2bx9_A 10 VACPKCERAGEIEG--TPCPACSGKGVIL 36 (53)
T ss_dssp EECTTTTTSSEETT--EECTTTTTSSEEE
T ss_pred ccCCCCcceeccCC--CCCccCCCCccEE
Confidence 34555555554432 4555555555443
No 23
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=96.50 E-value=0.0016 Score=45.12 Aligned_cols=28 Identities=29% Similarity=0.840 Sum_probs=18.2
Q ss_pred eEecCCCCCCCccCCCcccCCCCCCccEEE
Q 019828 63 NVICTKCKGKGSKSGASMKCSGCQGSGMKV 92 (335)
Q Consensus 63 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~ 92 (335)
..+|+.|+|+|.... .+|+.|+|+|.+.
T Consensus 9 ~~~C~~C~GsG~~i~--~~C~~C~G~G~v~ 36 (53)
T 3lcz_A 9 ETTCPNCNGSGREEP--EPCPKCLGKGVIL 36 (53)
T ss_dssp EEECTTTTTSCEETT--EECTTTTTSSEEE
T ss_pred eccCcCCcccccCCC--CcCCCCCCcEEEE
Confidence 356777777776542 5677777777653
No 24
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=63.77 E-value=36 Score=30.65 Aligned_cols=10 Identities=40% Similarity=1.022 Sum_probs=6.1
Q ss_pred ecCCCCCcee
Q 019828 107 HPCNECKGTG 116 (335)
Q Consensus 107 ~~C~~C~G~G 116 (335)
..|+.|.++|
T Consensus 157 ~~Cp~C~~~~ 166 (279)
T 1ltl_A 157 SLCSECGGRS 166 (279)
T ss_dssp SCCTTTCCCC
T ss_pred CcCCCCCCCC
Confidence 4566666666
No 25
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=59.58 E-value=24 Score=31.64 Aligned_cols=63 Identities=17% Similarity=0.162 Sum_probs=33.3
Q ss_pred ecCCCCCceeEEEcCcCCCCCCCCceEEEeeEEEEE-----EecCCCcCCCeEEecCCCCCCCCCCcccEEEEEEe
Q 019828 107 HPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEV-----IVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQ 177 (335)
Q Consensus 107 ~~C~~C~G~G~~i~~~~~C~~C~G~g~~~e~k~l~V-----~Ip~G~~~g~~i~~~g~G~~~~~~~~GDliv~i~~ 177 (335)
..|+.|..+|......+.| ...+...++| .+|+|--+. .|.+.=.+|-.....|||-+.+.=+
T Consensus 169 ~~Cp~C~~~~~~~l~~~~s-------~f~D~Q~ikiQE~pe~vp~G~~Pr-si~v~l~~dLvd~~~PGDrV~vtGI 236 (268)
T 2vl6_A 169 TICPKCGKPGQFRLIPEKT-------KLIDWQKAVIQERPEEVPSGQLPR-QLEIILEDDLVDSARPGDRVKVTGI 236 (268)
T ss_dssp SBCTTTCCBCEEEECGGGC-------EEEEEEEEEEECCGGGSCTTSCCC-EEEEEEEGGGTTSSCTTCEEEEEEE
T ss_pred ccCCCCCCCCCEEEecCcc-------EEEeeEEEEEEeCCCCCCCCCCCc-EEEEEEccCccCcccCCCEEEEEEE
Confidence 5688888776433322222 3445666666 244443332 2333334444445679998885443
No 26
>2lll_A Lamin-B2; immunoglobulin-like fold, structural protein, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=45.97 E-value=32 Score=28.01 Aligned_cols=50 Identities=12% Similarity=0.147 Sum_probs=33.5
Q ss_pred hCCcEEEEecCCCc-EEEEEeCCCccccCCcEEEEcCCCCCCCCCCCCCCceEE
Q 019828 202 LCGFQFVITHLDGR-QLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYI 254 (335)
Q Consensus 202 l~G~~~~i~~ldGr-~l~v~ip~g~vi~~g~~~~i~geGmP~~~~~~~~GdL~i 254 (335)
|-|+++.= ..||+ .+.++.|++-+++||..++|-..|.-.... .-.||+-
T Consensus 48 L~GW~L~r-~v~g~~~~~y~Fp~~~~L~pg~~VtIws~~~g~~~~--pp~dlv~ 98 (139)
T 2lll_A 48 LGNWRIKR-QVLEGEEIAYKFTPKYILRAGQMVTVWAAGAGVAHS--PPSTLVW 98 (139)
T ss_dssp CSSCEEEE-EETTSCEEEEECCTTCEECTTCEEEEEEGGGTCCCB--TTTEEEE
T ss_pred cCCCEEEE-ecCCCccEEEEECCCcEECCCCEEEEEeCCCCCCCC--CchhEEE
Confidence 55666553 34554 377899999999999999999877532211 2356665
No 27
>3jt0_A Lamin-B1; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, HR5546A, LMNB1_human; 2.39A {Homo sapiens}
Probab=45.18 E-value=30 Score=28.40 Aligned_cols=51 Identities=14% Similarity=0.144 Sum_probs=35.2
Q ss_pred hCCcEEEEecCCCcEEEEEeCCCccccCCcEEEEcCCCCCCCCCCCCCCceEEE
Q 019828 202 LCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIH 255 (335)
Q Consensus 202 l~G~~~~i~~ldGr~l~v~ip~g~vi~~g~~~~i~geGmP~~~~~~~~GdL~i~ 255 (335)
|-|+++. ...||+.+.++.|++-+++||..+.|-..|.-...+ .-.||+-+
T Consensus 52 LgGW~L~-r~v~g~~~~y~FP~~~~L~pg~~VtVwa~g~g~~~~--pp~dlv~~ 102 (144)
T 3jt0_A 52 MGGWEMI-RKIGDTSVSYKYTSRYVLKAGQTVTIWAANAGVTAS--PPTDLIWK 102 (144)
T ss_dssp CTTCEEE-EEETTEEEEEECCTTCEECTTCEEEEEETTSCCCCB--TTTEEEET
T ss_pred cCCcEEE-EEeCCCceEEEcCCCcEECCCCEEEEEECCCCCCCC--CChhheec
Confidence 5566655 335777777899999999999999999776532112 24566654
No 28
>3hn9_A Lamin-B1; structural genomics, structural genomics consortium, SGC, acetylation, chromosomal rearrangement, coiled coil, intermediate filament; 2.00A {Homo sapiens} PDB: 3umn_A 2kpw_A
Probab=38.61 E-value=64 Score=25.53 Aligned_cols=39 Identities=15% Similarity=0.202 Sum_probs=29.4
Q ss_pred HhCCcEEEEecCCCcEEEEEeCCCccccCCcEEEEcCCCC
Q 019828 201 ALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGM 240 (335)
Q Consensus 201 Al~G~~~~i~~ldGr~l~v~ip~g~vi~~g~~~~i~geGm 240 (335)
.|-|+++.-. .|+.....+.|++-+++||..+.|-..|.
T Consensus 38 ~L~gW~l~r~-v~~~~~~y~Fp~~~~L~pg~~vtVwa~g~ 76 (123)
T 3hn9_A 38 PMGGWEMIRK-IGDTSVSYKYTSRYVLKAGQTVTIWAANA 76 (123)
T ss_dssp ECTTCEEEEE-ETTEEEEEECCTTCEECTTCEEEEEETTS
T ss_pred ecCCcEEEEE-eCCCceEEEcCCCcEECCCCEEEEEECCC
Confidence 3566666533 46665568999999999999999988765
No 29
>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis}
Probab=36.47 E-value=4.1 Score=41.89 Aligned_cols=47 Identities=13% Similarity=0.355 Sum_probs=30.7
Q ss_pred ccCCCCCCccEEEEEEecCCccceeeeecCCCCCceeE-------------------EEcCcCCCCCCCCceE
Q 019828 80 MKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGE-------------------TINDKDRCPQCKGEKV 133 (335)
Q Consensus 80 ~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~-------------------~i~~~~~C~~C~G~g~ 133 (335)
..|..|+|+|.. +|--.....+|+.|+|+.. .......|..||....
T Consensus 192 ~~C~tCHGsGA~-------~Gt~~~~~~tC~tCHGs~~~~~~~~~~~~~iH~iH~G~fP~~~~~C~~CH~~~~ 257 (669)
T 3pmq_A 192 DTCNSCHSNLAF-------HGGRYNQVETCVTCHNSKKVSNAADIFPQMIHSKHLTGFPQSISNCQTCHADNP 257 (669)
T ss_dssp HHHHHHHSSCCT-------TTTTSCSSSCSTTTSSTTTCCCSSCSHHHHHHHHTTSSCSSCTTCCTTTSCCCT
T ss_pred CcCCCCCCCCCc-------CCccCcCCccCCCCCCCcccCCccccccceeeeeeccCCCCccCcchhhcCCcc
Confidence 579999999852 2321123478999999831 1122467999997653
No 30
>1ifr_A Lamin A/C; immunoglobulin, immune system; 1.40A {Homo sapiens} SCOP: b.1.16.1 PDB: 1ivt_A 3gef_A
Probab=35.74 E-value=65 Score=25.44 Aligned_cols=51 Identities=16% Similarity=0.082 Sum_probs=34.1
Q ss_pred HhCCcEEEEecCCCc-EEEEEeCCCccccCCcEEEEcCCCCCCCCCCCCCCceEE
Q 019828 201 ALCGFQFVITHLDGR-QLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYI 254 (335)
Q Consensus 201 Al~G~~~~i~~ldGr-~l~v~ip~g~vi~~g~~~~i~geGmP~~~~~~~~GdL~i 254 (335)
.|-|+++.=. .||+ .+.++.|++-+++||..++|-..|.-.... .-.||+-
T Consensus 32 ~L~gW~l~r~-v~~~~~~~y~Fp~~~~L~pg~~vtIws~~~g~~~~--pp~dlv~ 83 (121)
T 1ifr_A 32 SMGNWQIKRQ-NGDDPLLTYRFPPKFTLKAGQVVTIWAAGAGATHS--PPTDLVW 83 (121)
T ss_dssp ECTTCEEEEE-ETTSCCEEEECCSSCEECTTCEEEEEETTSSCCCB--TTTEEEE
T ss_pred ccCCCEEEEE-cCCCccEEEEeCCCcEECCCCEEEEEeCCCCCCCC--CchhEEE
Confidence 3566665533 4554 367889999999999999999887532212 2356665
No 31
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=32.56 E-value=36 Score=26.08 Aligned_cols=40 Identities=20% Similarity=0.548 Sum_probs=27.3
Q ss_pred ccccceeeccCC---HHHHhCCcEEEEecCCCcEEEEEeCCCc
Q 019828 186 KGDDLFVEHTLS---LTEALCGFQFVITHLDGRQLLIKSQPGE 225 (335)
Q Consensus 186 ~g~dL~~~~~I~---l~eAl~G~~~~i~~ldGr~l~v~ip~g~ 225 (335)
++.+|++....+ ..+......+.|++++|+.+.|.+++..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~m~I~Vk~~~G~~~~l~v~~~~ 56 (111)
T 3vdz_A 14 DGDELYIDTDNDGSIDGDELLAMQIFVKTLTGKTITLEVEPSD 56 (111)
T ss_dssp CGGGEEECTTCSSCCCTGGGGCEEEEEECSSSCEEEEEECTTC
T ss_pred CCceeccccccccccCcCCCccEEEEEEeCCCCEEEEEeCCCC
Confidence 466777776554 3444456778888888888888777654
No 32
>1ufg_A Lamin A, nuclear lamin; immunoglobulin like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: b.1.16.1
Probab=30.56 E-value=92 Score=25.62 Aligned_cols=52 Identities=13% Similarity=0.076 Sum_probs=34.2
Q ss_pred HhCCcEEEEecCCCc-EEEEEeCCCccccCCcEEEEcCCCCCCCCCCCCCCceEEE
Q 019828 201 ALCGFQFVITHLDGR-QLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIH 255 (335)
Q Consensus 201 Al~G~~~~i~~ldGr-~l~v~ip~g~vi~~g~~~~i~geGmP~~~~~~~~GdL~i~ 255 (335)
.|-|+++.=. .||. .+.++.|++-+++||..++|-..+.-.... .-.||+.+
T Consensus 63 ~L~GW~L~r~-vdg~~~~~y~Fp~~~~L~pg~tVtIws~~~g~~~~--pp~dlv~k 115 (151)
T 1ufg_A 63 SMGNWQIRRQ-NGDDPLMTYRFPPKFTLKAGQVVTIWASGAGATHS--PPTDLVWK 115 (151)
T ss_dssp ECSSCEEEEE-ETTSCCEEEECCTTCEECTTCEEEEEESSSSCCCC--TTTEEEEC
T ss_pred ccCCCEEEEe-cCCCccEEEEECCCcEECCCCEEEEEeCCCCCCCC--CchhEEEe
Confidence 3556665432 3554 377889999999999999999877532211 23566653
No 33
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=29.71 E-value=12 Score=37.19 Aligned_cols=31 Identities=35% Similarity=0.664 Sum_probs=21.0
Q ss_pred cEEEEEE-ecCCccceeeeecCCCCCceeEEE
Q 019828 89 GMKVSIR-HLGPSMIQQMQHPCNECKGTGETI 119 (335)
Q Consensus 89 G~~~~~~-~~gpg~~~q~~~~C~~C~G~G~~i 119 (335)
|.+-.+| +.++.+...+..+|+.|+|+|.+.
T Consensus 390 GLvEmTRkR~r~sL~e~~~~~Cp~C~G~G~v~ 421 (517)
T 2bx2_L 390 GLLEMSRQRLSPSLGESSHHVCPRCSGTGTVR 421 (517)
T ss_dssp SEEEEEECCCSCCHHHHHCCCCSSSSSSSCCC
T ss_pred ceEEEeecCcCcChhhhhcCcCCCcCCceeEC
Confidence 4444444 466667666777899999888764
No 34
>3p8b_A DNA-directed RNA polymerase, subunit E''; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus}
Probab=29.01 E-value=45 Score=24.62 Aligned_cols=30 Identities=33% Similarity=0.753 Sum_probs=19.7
Q ss_pred ecCCCCCceeEEEcCcCCCCCCCCceEEEeeEEE
Q 019828 107 HPCNECKGTGETINDKDRCPQCKGEKVIQEKKVL 140 (335)
Q Consensus 107 ~~C~~C~G~G~~i~~~~~C~~C~G~g~~~e~k~l 140 (335)
..|..|+ .+.+.+.|+.|...-++.+..-+
T Consensus 24 rAC~~C~----~v~~~d~CPnCgs~~~T~~w~G~ 53 (81)
T 3p8b_A 24 KACRHCH----YITSEDRCPVCGSRDLSEEWFDL 53 (81)
T ss_dssp EEETTTC----BEESSSSCTTTCCCCEESCEEEE
T ss_pred HHHhhCC----CccCCCCCCCCCCCccCCccceE
Confidence 4688886 34456789999887655554433
No 35
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=27.61 E-value=31 Score=24.00 Aligned_cols=21 Identities=29% Similarity=0.774 Sum_probs=11.1
Q ss_pred ecCCCCCceeEEEcCcCCCCCCCCc
Q 019828 107 HPCNECKGTGETINDKDRCPQCKGE 131 (335)
Q Consensus 107 ~~C~~C~G~G~~i~~~~~C~~C~G~ 131 (335)
..|+.|. ..+. ++.|+.|.+.
T Consensus 7 r~C~~Cg---vYTL-k~~CP~CG~~ 27 (60)
T 2apo_B 7 KKCPKCG---LYTL-KEICPKCGEK 27 (60)
T ss_dssp EECTTTC---CEES-SSBCSSSCSB
T ss_pred eeCCCCC---CEec-cccCcCCCCc
Confidence 4566662 2222 5667777644
No 36
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=27.44 E-value=50 Score=23.92 Aligned_cols=25 Identities=28% Similarity=0.631 Sum_probs=17.3
Q ss_pred HhCCcEEEEecCCCcEEEEEeCCCc
Q 019828 201 ALCGFQFVITHLDGRQLLIKSQPGE 225 (335)
Q Consensus 201 Al~G~~~~i~~ldGr~l~v~ip~g~ 225 (335)
-|-|..+.|++++|+.+.|.+++..
T Consensus 6 ~~~~~~i~v~~~~G~~~~l~v~~~~ 30 (88)
T 1sif_A 6 HLQGLQLFIKTLTGKTFTVEMEPSD 30 (88)
T ss_dssp ----CEEEEEETTSCEEEEECCTTS
T ss_pred cccceEEEEEeCCCCEEEEEECCCC
Confidence 3678888899999988888877654
No 37
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=25.70 E-value=28 Score=36.79 Aligned_cols=32 Identities=34% Similarity=0.757 Sum_probs=18.4
Q ss_pred cCCCCCCccEEEEEEecCCccceeeeecCCCCCcee
Q 019828 81 KCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTG 116 (335)
Q Consensus 81 ~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G 116 (335)
.|+.|+|.|.+....+.-| ....+|+.|+|+.
T Consensus 640 ~c~~c~g~G~~~~~~~f~~----~v~~~c~~c~G~r 671 (842)
T 2vf7_A 640 RCEHCQGEGWVMVELLFLP----SVYAPCPVCHGTR 671 (842)
T ss_dssp BCTTTTTCSEEEETTCSSS----CEEEECTTTTTCC
T ss_pred ccccccCCCccchhhhcCC----ccceecccccCcc
Confidence 4888988887654333222 2335566666543
No 38
>1mli_A Muconolactone isomerase; intramolecular oxidoreductase; 3.30A {Pseudomonas putida} SCOP: d.58.4.1
Probab=25.14 E-value=73 Score=24.28 Aligned_cols=22 Identities=23% Similarity=0.534 Sum_probs=17.9
Q ss_pred EEEEEEeCCCCCCHHHHHHHHh
Q 019828 253 YIHFTVDFPESLSPDQCKMLET 274 (335)
Q Consensus 253 ~i~f~V~fP~~l~~~~~~~L~~ 274 (335)
.|++.|++|..++++++..|+.
T Consensus 4 lV~m~V~~P~~~~~~~~~~~~a 25 (96)
T 1mli_A 4 HVKMTVKLPVDMDPAKATQLKA 25 (96)
T ss_pred EEEEEeeCCCCCCHHHHHHHHH
Confidence 5899999999999887666543
No 39
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=24.20 E-value=91 Score=24.14 Aligned_cols=40 Identities=10% Similarity=0.279 Sum_probs=21.5
Q ss_pred hhcCceeEEeee-eeEecCCCCCCCccCCCcc-cCCCCCCcc
Q 019828 50 LYNGTSKKLSLS-RNVICTKCKGKGSKSGASM-KCSGCQGSG 89 (335)
Q Consensus 50 ~y~G~~~~i~~~-r~~~C~~C~G~G~~~~~~~-~C~~C~G~G 89 (335)
++.|+...+... -...|..|.-.-....... .||.|.+.-
T Consensus 59 ~~e~a~L~i~~~p~~~~C~~CG~~~e~~~~~~~~CP~Cgs~~ 100 (119)
T 2kdx_A 59 VCKDAILDIVDEKVELECKDCSHVFKPNALDYGVCEKCHSKN 100 (119)
T ss_dssp TTSSCCEEEEEECCEEECSSSSCEECSCCSTTCCCSSSSSCC
T ss_pred hhcCcEEEEEeccceEEcCCCCCEEeCCCCCCCcCccccCCC
Confidence 445555444433 2467888865543333345 677776664
No 40
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.16 E-value=2.4e+02 Score=21.84 Aligned_cols=61 Identities=11% Similarity=0.182 Sum_probs=34.6
Q ss_pred hCCcEEEEecCCCcEEEEEeCCCcc-----ccCCcEEEEcCCCCCCCCCCCCCCceEEEEEEeCCCCCCHHHHHHHHhh
Q 019828 202 LCGFQFVITHLDGRQLLIKSQPGEV-----VKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETV 275 (335)
Q Consensus 202 l~G~~~~i~~ldGr~l~v~ip~g~v-----i~~g~~~~i~geGmP~~~~~~~~GdL~i~f~V~fP~~l~~~~~~~L~~~ 275 (335)
|-+..+.|...||..+...|| |.. |.+|+.+.|.= -.+. ...+|+++-+ ++++|+..|++.
T Consensus 25 lgn~~f~V~l~nG~~~la~i~-GK~Rk~IwI~~GD~VlVe~---~~yd-~~~kg~Iv~r--------~~~~qvk~L~k~ 90 (111)
T 2dgy_A 25 PGNNLHEVETAQGQRFLVSMP-SKYRKNIWIKRGDFLIVDP---IEEG-EKVKAEISFV--------LCKDHVRSLQKE 90 (111)
T ss_dssp CSSSEEEEECTTSCEEEEECC-TTCCSCCCCCSSCEEEEEE---CSSC-SSCCEEEEEE--------CCHHHHHHHHHH
T ss_pred CCCCEEEEEeCCCCEEEEEec-hhhcccEEEcCCCEEEEEe---cccC-CcceEEEEEE--------eCHHHHHHHHHc
Confidence 334467788888888777765 542 45566655541 1111 1235555443 457788887664
No 41
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=23.47 E-value=39 Score=36.28 Aligned_cols=32 Identities=28% Similarity=0.749 Sum_probs=19.9
Q ss_pred cCCCCCCccEEEEEEecCCccceeeeecCCCCCcee
Q 019828 81 KCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTG 116 (335)
Q Consensus 81 ~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G 116 (335)
.|+.|+|.|.+....+.- .....+|..|+|..
T Consensus 755 rC~~C~g~G~i~~em~fl----~~v~~~ce~c~G~r 786 (972)
T 2r6f_A 755 RCEACHGDGIIKIEMHFL----PDVYVPCEVCHGKR 786 (972)
T ss_dssp BCTTTTTCSEEEECCSSS----CCEEEECTTTTTCC
T ss_pred cccccccccceeeehhcc----cccccccccccccc
Confidence 599999999875433322 22345677777653
No 42
>1gmu_A UREE; metallochaperone; 1.5A {Klebsiella aerogenes} SCOP: b.107.1.1 d.58.38.1 PDB: 1gmw_A 1gmw_D 1gmv_A
Probab=21.78 E-value=1.5e+02 Score=23.97 Aligned_cols=45 Identities=16% Similarity=0.153 Sum_probs=35.7
Q ss_pred eeccCCHHHHhCCcEEEEecCCCcEEEEEeCCCccccCCcEEEEcC
Q 019828 192 VEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAIND 237 (335)
Q Consensus 192 ~~~~I~l~eAl~G~~~~i~~ldGr~l~v~ip~g~vi~~g~~~~i~g 237 (335)
-++.++..+. .=-...+.|-+|+.+-|.+|.+..+++|+++....
T Consensus 16 ~~v~L~~~~r-~k~R~r~~t~~G~e~~l~L~r~~~L~dGDvL~~dd 60 (143)
T 1gmu_A 16 ASVTLPIDVR-VKSRVKVTLNDGRDAGLLLPRGLLLRGGDVLSNEE 60 (143)
T ss_dssp EEEEECHHHH-TCSEEEEECTTSCEEEEECCSSCCCCTTCEEECTT
T ss_pred eEEEeCHHHH-hcceEEEECCCCCEEEEECCCCcccCCCCEEEECC
Confidence 3466776666 33477888899999999999999999999997653
No 43
>3gne_A Val-1; alginate lyase, polysaccharide lyase family 14, chlorella VI lyase; HET: FLC; 1.20A {Chlorella virus} PDB: 3a0n_A* 3im0_A*
Probab=21.25 E-value=2.1e+02 Score=25.52 Aligned_cols=49 Identities=14% Similarity=0.259 Sum_probs=31.4
Q ss_pred EecCCC-cEEEEEeCCCccccCC------cEEEEcCCCCCCCCCCCCCCceEEEEEEeCCCCCC
Q 019828 209 ITHLDG-RQLLIKSQPGEVVKPD------QFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLS 265 (335)
Q Consensus 209 i~~ldG-r~l~v~ip~g~vi~~g------~~~~i~geGmP~~~~~~~~GdL~i~f~V~fP~~l~ 265 (335)
|..+|| +.|.|..|+|.+ .|+ ..+...-.+++ .-.+++.+.|.||+++.
T Consensus 31 ~~~~~g~~~Lrv~YP~Gs~-~~~~~~~GG~~fy~~p~~~~-------~~e~~lsY~V~Fp~~Fd 86 (252)
T 3gne_A 31 VTTFDGKRVVKAVYDKNSG-TSANPGVGGFSFSAVPDGLN-------KNAITFAWEVFYPKGFD 86 (252)
T ss_dssp EEEETTEEEEEEEECTTBS-STTSCBCBCEEEEECCTTCC-------TTEEEEEEEEEBCTTCC
T ss_pred eecCCCCEEEEEEcCCCCC-CCCCCCCCceEEEecCCCCC-------cceEEEEEEEECCCCCc
Confidence 344554 457888999874 453 33333222222 26899999999999964
No 44
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Probab=21.12 E-value=1.1e+02 Score=21.84 Aligned_cols=28 Identities=29% Similarity=0.761 Sum_probs=17.4
Q ss_pred eecCCCCCceeEEEcCcCCCCCCCCceEEEee
Q 019828 106 QHPCNECKGTGETINDKDRCPQCKGEKVIQEK 137 (335)
Q Consensus 106 ~~~C~~C~G~G~~i~~~~~C~~C~G~g~~~e~ 137 (335)
...|..|+- ++ ..+.|+.|...-++.+-
T Consensus 11 ~~AC~~C~~---~~-~~~~CPnC~s~~tS~~w 38 (69)
T 1ryq_A 11 EKACRHCHY---IT-SEDRCPVCGSRDLSEEW 38 (69)
T ss_dssp CEEETTTCB---EE-SSSSCTTTCCCCEESCE
T ss_pred hhhHHhCCc---cc-cCCcCCCccCCccCCcc
Confidence 456777764 33 67788888866544443
Done!