BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>019829
MATLIYNNLCLLSSRPRVKVLSLSRIVSSSEVEVSKRRVLKQVDEELSKGDERAALALVK
DLQGKPGGLRCFGAARQIPQRLYTLDELKLNGIETRSLLSPVDETLGSIERNLQLAAIVG
GVSAWNVFGFNPQQILYLSLALLFLWTVDSVSYNGGVGSLVLDTIGHTFSQKYHNRVIQH
EAGHFLIAYLVGILPKGYTLTSFEALKKEGSLNVQAGTAFVDFEFLEEVNSGKVSATTLN
RFSCIALAGVATEYLLYGYAEGGLADINKLDALLKGLGFTQKKADSQVRWSLLNTVLLLR
RHKGARAKLAVAMTMGKSVGSCIDIIEDNIDDTDI

High Scoring Gene Products

Symbol, full name Information P value
AT5G27290 protein from Arabidopsis thaliana 2.3e-119
AT1G54680 protein from Arabidopsis thaliana 5.4e-31
AT1G56180 protein from Arabidopsis thaliana 5.2e-20
AT2G21960 protein from Arabidopsis thaliana 2.0e-13

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  019829
        (335 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2181221 - symbol:AT5G27290 species:3702 "Arabi...  1175  2.3e-119  1
TAIR|locus:2199471 - symbol:AT1G54680 "AT1G54680" species...   341  5.4e-31   1
TAIR|locus:2011861 - symbol:AT1G56180 "AT1G56180" species...   240  5.2e-20   1
TAIR|locus:2052474 - symbol:AT2G21960 species:3702 "Arabi...   193  2.0e-13   1


>TAIR|locus:2181221 [details] [associations]
            symbol:AT5G27290 species:3702 "Arabidopsis thaliana"
            [GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0030003 "cellular
            cation homeostasis" evidence=RCA] [GO:0070838 "divalent metal ion
            transport" evidence=RCA] EMBL:CP002688 GenomeReviews:BA000015_GR
            GO:GO:0009507 UniGene:At.49069 UniGene:At.69944 EMBL:BT028971
            IPI:IPI00533047 RefSeq:NP_568492.1 ProteinModelPortal:Q08AA8
            STRING:Q08AA8 PaxDb:Q08AA8 PRIDE:Q08AA8 EnsemblPlants:AT5G27290.1
            GeneID:832787 KEGG:ath:AT5G27290 TAIR:At5g27290 eggNOG:NOG08023
            HOGENOM:HOG000265031 InParanoid:Q08AA8 OMA:KADSQVR PhylomeDB:Q08AA8
            ProtClustDB:CLSN2689874 Genevestigator:Q08AA8 Uniprot:Q08AA8
        Length = 341

 Score = 1175 (418.7 bits), Expect = 2.3e-119, P = 2.3e-119
 Identities = 222/283 (78%), Positives = 255/283 (90%)

Query:    40 LKQVDEELSKGDERAALALVKDLQGKPGGLRCFGAARQIPQRLYTLDELKLNGIETRSLL 99
             L+QVD +LS GDERAAL+LVKDLQGKP GLRCFGAARQ+PQRLYTL+ELKLNGI   SLL
Sbjct:    46 LEQVDSKLSSGDERAALSLVKDLQGKPDGLRCFGAARQVPQRLYTLEELKLNGINAASLL 105

Query:   100 SPVDETLGSIERNLQLAAIVGGVSAWNVFGFNPQQILYLSLALLFLWTVDSVSYNGGVGS 159
             SP D TLGSIERNLQ+AA+ GG+ AW  F  + QQ+ +L+L  +FLWT+D VS+NGG+GS
Sbjct:   106 SPTDTTLGSIERNLQIAAVSGGIVAWKAFDLSSQQLFFLTLGFMFLWTLDLVSFNGGIGS 165

Query:   160 LVLDTIGHTFSQKYHNRVIQHEAGHFLIAYLVGILPKGYTLTSFEALKKEGSLNVQAGTA 219
             LVLDT GHTFSQ+YHNRV+QHEAGHFL+AYLVGILP+GYTL+S EAL+KEGSLN+QAG+A
Sbjct:   166 LVLDTTGHTFSQRYHNRVVQHEAGHFLVAYLVGILPRGYTLSSLEALQKEGSLNIQAGSA 225

Query:   220 FVDFEFLEEVNSGKVSATTLNRFSCIALAGVATEYLLYGYAEGGLADINKLDALLKGLGF 279
             FVD+EFLEEVNSGKVSAT LNRFSCIALAGVATEYLLYGYAEGGL DI+KLD L+K LGF
Sbjct:   226 FVDYEFLEEVNSGKVSATMLNRFSCIALAGVATEYLLYGYAEGGLDDISKLDGLVKSLGF 285

Query:   280 TQKKADSQVRWSLLNTVLLLRRHKGARAKLAVAMTMGKSVGSC 322
             TQKKADSQVRWS+LNT+LLLRRH+ AR+KLA AM+ G+SVGSC
Sbjct:   286 TQKKADSQVRWSVLNTILLLRRHEIARSKLAQAMSKGESVGSC 328


>TAIR|locus:2199471 [details] [associations]
            symbol:AT1G54680 "AT1G54680" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0009507 "chloroplast" evidence=ISM] EMBL:CP002684
            UniGene:At.10837 UniGene:At.71292 HOGENOM:HOG000265031
            EMBL:AK221413 IPI:IPI00529113 RefSeq:NP_175867.2
            ProteinModelPortal:Q56YB0 STRING:Q56YB0 EnsemblPlants:AT1G54680.1
            GeneID:841909 KEGG:ath:AT1G54680 TAIR:At1g54680 eggNOG:NOG298880
            InParanoid:Q56YB0 OMA:FSCVILG ProtClustDB:CLSN2699143
            Genevestigator:Q56YB0 Uniprot:Q56YB0
        Length = 223

 Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
 Identities = 68/161 (42%), Positives = 103/161 (63%)

Query:   177 VIQHEAGHFLIAYLVGILPKGYTLTSFEALKKEGSLNVQAGTAFVDFEFLEEV------- 229
             V+QHE+GHFL+ YL+G+LP+ Y + + EA+++  S NV     FV FEFL++V       
Sbjct:    51 VVQHESGHFLVGYLLGVLPRHYEIPTLEAVRQNVS-NVTGRVEFVGFEFLKQVGAANQLM 109

Query:   230 --------NSGKVSATTLNRFSCIALAGVATEYLLYGYAEGGLADINKLDALLKGLGFTQ 281
                     N G +S+ TLN FSC+ L G+ TE++L+GY+EG  +DI KL+ +L+ LGFT+
Sbjct:   110 KDDVDGQMNQGNISSKTLNNFSCVILGGMVTEHILFGYSEGLYSDIVKLNDVLRWLGFTE 169

Query:   282 KKADSQVRWSLLNTVLLLRRHKGARAKLAVAMTMGKSVGSC 322
              + ++ ++W++ NTV LL  HK AR  LA  M   K + +C
Sbjct:   170 SEKEAHIKWAVSNTVSLLHSHKEARVSLAETMAKAKPISTC 210

 Score = 144 (55.7 bits), Expect = 3.4e-08, P = 3.4e-08
 Identities = 39/104 (37%), Positives = 62/104 (59%)

Query:   137 YLSLALLFLWTVDSVSYNGGVGSLVL--DTIG-------HTFSQKYHNRVIQHEAGHFLI 187
             YL LALL    +DSVS +  + S+ +  D++         T  ++    V+QHE+GHFL+
Sbjct:     4 YLLLALLNWSLIDSVSRS--IESVYVQEDSVRTSKEMEIKTSPEEDWFSVVQHESGHFLV 61

Query:   188 AYLVGILPKGYTLTSFEALKKEGSLNVQAGTAFVDFEFLEEVNS 231
              YL+G+LP+ Y + + EA+++  S NV     FV FEFL++V +
Sbjct:    62 GYLLGVLPRHYEIPTLEAVRQNVS-NVTGRVEFVGFEFLKQVGA 104


>TAIR|locus:2011861 [details] [associations]
            symbol:AT1G56180 "AT1G56180" species:3702 "Arabidopsis
            thaliana" [GO:0008150 "biological_process" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM] EMBL:CP002684 EMBL:AC069159
            EMBL:BT001014 IPI:IPI00523261 PIR:C96603 RefSeq:NP_564711.1
            UniGene:At.28711 ProteinModelPortal:Q9C7J3 STRING:Q9C7J3
            PRIDE:Q9C7J3 EnsemblPlants:AT1G56180.1 GeneID:842071
            KEGG:ath:AT1G56180 TAIR:At1g56180 InParanoid:Q9C7J3 OMA:NDENLFR
            PhylomeDB:Q9C7J3 ProtClustDB:CLSN2688864 Genevestigator:Q9C7J3
            Uniprot:Q9C7J3
        Length = 389

 Score = 240 (89.5 bits), Expect = 5.2e-20, P = 5.2e-20
 Identities = 75/228 (32%), Positives = 117/228 (51%)

Query:    92 GIETRSLLSPVDETLGSIERNLQLAAIVGGVSAWNVFGFNPQQILYLSLALLFLWTVDSV 151
             G+E   L SP    L     ++ LAA++GGVS       + +  L + L L +L   DSV
Sbjct:   157 GLEVTKL-SPKKWGLSG-GSSIALAALLGGVSYLLSQEIDVRPNLAVILGLAYL---DSV 211

Query:   152 SYNGGVGSLVLDTIGHTFSQKYHNRVIQHEAGHFLIAYLVGILPKGYTLTSFEALKKEGS 211
              + GG     L  +   +   +  R++ HEAGH L+AYL+G   +G  L    A++    
Sbjct:   212 -FLGGT---CLAQVS-CYWPPHKRRIVVHEAGHLLVAYLMGCPIRGVILDPVVAMQM--G 264

Query:   212 LNVQAGTAFVDFEFLEEVNSGKVSATTLNRFSCIALAGVATEYLLYGYAEGGLADIN--- 268
             +  QAGT F D +   E+  G++S ++ +R+S +  AG+A E L+YG AEGG  D N   
Sbjct:   265 VQGQAGTQFWDQKMESEIAEGRLSGSSFDRYSMVLFAGIAAEALVYGEAEGGENDENLFR 324

Query:   269 KLDALLKGLGFTQKKADSQVRWSLLNTVLLLRRHKGARAKLAVAMTMG 316
              +  LL+    +  +  +Q RWS+L +  LL+ HK A      A+ +G
Sbjct:   325 SISVLLEP-PLSVAQMSNQARWSVLQSYNLLKWHKAAHRAAVEALQVG 371


>TAIR|locus:2052474 [details] [associations]
            symbol:AT2G21960 species:3702 "Arabidopsis thaliana"
            [GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009534
            "chloroplast thylakoid" evidence=IDA] [GO:0006098
            "pentose-phosphate shunt" evidence=RCA] EMBL:CP002685 GO:GO:0009534
            EMBL:AC007019 UniGene:At.24155 UniGene:At.48502 EMBL:AY034988
            EMBL:AY142565 IPI:IPI00519882 PIR:C84607 RefSeq:NP_565523.1
            ProteinModelPortal:Q9SJ03 STRING:Q9SJ03 PRIDE:Q9SJ03
            EnsemblPlants:AT2G21960.1 GeneID:816732 KEGG:ath:AT2G21960
            TAIR:At2g21960 InParanoid:Q9SJ03 OMA:NDAAFLF PhylomeDB:Q9SJ03
            ProtClustDB:CLSN2688329 ArrayExpress:Q9SJ03 Genevestigator:Q9SJ03
            Uniprot:Q9SJ03
        Length = 332

 Score = 193 (73.0 bits), Expect = 2.0e-13, P = 2.0e-13
 Identities = 76/290 (26%), Positives = 133/290 (45%)

Query:    40 LKQVDEELSKGDERAALALVKDLQGKPGGLRCFGAARQIPQRLYTLDELKLNGI---ETR 96
             L  ++  ++K D       +  L  + G  + + +   + +R  +L EL   GI   ET 
Sbjct:    53 LSSLESAINKKDSNGVKEALDKLS-EEGWAKKWSSQPYLSRRTTSLRELTTLGIKNAETL 111

Query:    97 SLLSPVDET--LGSIERNLQLAAIVGGVSAWNVFGFNPQQILYLSLALLFLWTVDSVSYN 154
             ++ S  ++   L ++  +    A++ G    +   F P  +  +SL +L    V SVS  
Sbjct:   112 AIPSVRNDAAFLFTVVGSTGFIAVLAGQLPGDWGFFVPYLVGSISLVVL---AVGSVS-- 166

Query:   155 GGVGSLVLDTIGHTFSQKYHNRVIQHEAGHFLIAYLVGILPKGYTLTSFEALKKEGSLNV 214
              G+    +     TF   Y  R+  HEA HFL+AYL+G+   GY+L     + KE  +N+
Sbjct:   167 PGLLQAAISGFS-TFFPDYQERIAAHEAAHFLVAYLIGLPILGYSLD----IGKE-HVNL 220

Query:   215 QAGTAFVDFEFLEEVNSGKVSATTLNRFSCIALAGVATEYLLYGYAEGGLADINKLDALL 274
                   +D    + + SGK+ +  L+R + +A+AG+A E L Y    G  AD+  L   +
Sbjct:   221 ------IDERLAKLIYSGKLDSKELDRLAAVAMAGLAAEGLKYDKVIGQSADLFSLQRFI 274

Query:   275 KGLG--FTQKKADSQVRWSLLNTVLLLRRHKGARAKLAVAMTMGKSVGSC 322
                    + ++  +  RW++L +  LL+ +K     L  AM+   SV  C
Sbjct:   275 NRSQPKISNEQQQNLTRWAVLYSASLLKNNKTIHEALMAAMSKNASVLEC 324


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.137   0.394    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      335       299   0.00095  115 3  11 22  0.38    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  610 (65 KB)
  Total size of DFA:  191 KB (2109 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.99u 0.25s 21.24t   Elapsed:  00:00:01
  Total cpu time:  20.99u 0.25s 21.24t   Elapsed:  00:00:01
  Start:  Fri May 10 09:06:49 2013   End:  Fri May 10 09:06:50 2013

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