BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019829
         (335 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q5ZM13|HYCCI_CHICK Hyccin OS=Gallus gallus GN=FAM126A PE=2 SV=1
          Length = 515

 Score = 34.3 bits (77), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 10/81 (12%)

Query: 196 KGYTLTSFEALKKEGSLNVQAGTAFVDFEFLEEV-------NSGKVSATTLNRFSCIALA 248
           K  TLT+ ++L K GS ++   T  V  +  E+V       N G VS T  NRFS  +L 
Sbjct: 421 KRLTLTTSQSLPKPGSHSLARTTTTVFSKSFEQVSGVTVANNRGGVSGTEANRFSACSL- 479

Query: 249 GVATEYLLYGYAEGGLADINK 269
               E L+YG     L  ++K
Sbjct: 480 --QEEKLIYGTERTDLPVLSK 498


>sp|P31376|SWC3_YEAST SWR1-complex protein 3 OS=Saccharomyces cerevisiae (strain ATCC
           204508 / S288c) GN=SWC3 PE=1 SV=2
          Length = 625

 Score = 33.9 bits (76), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 12/89 (13%)

Query: 43  VDEELSKGDERAALALVKDLQGKPGGLRCFGAARQIPQRLYTLDELKLNGIETR------ 96
            D++L+K D +    + K++   P     F A    P  LYT   +KL+GI  R      
Sbjct: 510 ADQKLNKEDAKPGSDVEKEVSFNP----LFEA--DCPTPLYTPMTMKLSGIHKRFNQIIR 563

Query: 97  SLLSPVDETLGSIERNLQLAAIVGGVSAW 125
           + +SP++E +  +E+ LQ+   + G + W
Sbjct: 564 NSVSPMEEVVKEMEKILQIGTRLSGYNLW 592


>sp|Q9PB04|GRPE_XYLFA Protein GrpE OS=Xylella fastidiosa (strain 9a5c) GN=grpE PE=3 SV=2
          Length = 172

 Score = 33.5 bits (75), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 13/45 (28%), Positives = 23/45 (51%)

Query: 158 GSLVLDTIGHTFSQKYHNRVIQHEAGHFLIAYLVGILPKGYTLTS 202
           G ++LD +G  F+ ++H  + Q E       Y++ +  KGY L  
Sbjct: 114 GLMLLDPVGQLFNPEHHQAISQTEVTDVEPGYVIQVFQKGYLLNE 158


>sp|A0JUH2|DNLJ_ARTS2 DNA ligase OS=Arthrobacter sp. (strain FB24) GN=ligA PE=3 SV=1
          Length = 790

 Score = 33.1 bits (74), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 37/72 (51%), Gaps = 7/72 (9%)

Query: 249 GVAT---EYLLYGYAEGGLADINKLDALLKGLGFTQ-KKADSQVRWSLLNTVLLLRRHKG 304
           GVAT   E + Y Y +G     +K  A  + L FT+ +KA SQ  W +L  V L  RH G
Sbjct: 554 GVATGEFELVPYFYTKGTAKSPSKPTATTEKL-FTELEKAKSQPLWRVL--VALSIRHVG 610

Query: 305 ARAKLAVAMTMG 316
            RA  A+A   G
Sbjct: 611 PRASRALATAFG 622


>sp|P46249|SECY_CYACA Protein translocase subunit SecY OS=Cyanidium caldarium GN=secY
           PE=2 SV=2
          Length = 410

 Score = 32.0 bits (71), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 3/60 (5%)

Query: 125 WNVFGFNPQQILYLSLALLFLWTVDSVSYNG---GVGSLVLDTIGHTFSQKYHNRVIQHE 181
           WN++      ++ +S A+L +W  D++SY G   G   ++   I   F++   N++  H 
Sbjct: 133 WNLYFIVQTTLILISGAMLVMWLADNISYKGIGTGASVIIFVNIASAFAKFLLNQLFVHS 192


>sp|O08677|KNG1_MOUSE Kininogen-1 OS=Mus musculus GN=Kng1 PE=1 SV=1
          Length = 661

 Score = 32.0 bits (71), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 2/45 (4%)

Query: 199 TLTSFEALKKEGSLNVQAGTAFVDFEF--LEEVNSGKVSATTLNR 241
           T  SF+ L KEG+ + Q+G A+ D +F   EE  +G+ +AT   R
Sbjct: 70  TFYSFKYLIKEGNCSAQSGLAWQDCDFKDAEEAATGECTATVGKR 114


>sp|Q9M1Z9|LRK58_ARATH Putative L-type lectin-domain containing receptor kinase V.8
           OS=Arabidopsis thaliana GN=LECRK58 PE=3 SV=1
          Length = 626

 Score = 31.6 bits (70), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 14/79 (17%)

Query: 132 PQQILYLSLALLFLWTVDSVSYN-------------GGVGSLVL-DTIGHTFSQKYHNRV 177
           P ++  L + L+ L+T+ S +YN               +G  +L +T  H+  Q ++N  
Sbjct: 2   PSELKVLHIVLVLLYTLSSSTYNSNGNWTLEGSAADNSIGDTILTNTKKHSCGQTFNNES 61

Query: 178 IQHEAGHFLIAYLVGILPK 196
           I  +   F   +L GI+P+
Sbjct: 62  IPIKDSSFSFHFLFGIVPE 80


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.136    0.386 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 116,308,456
Number of Sequences: 539616
Number of extensions: 4675730
Number of successful extensions: 12784
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 12782
Number of HSP's gapped (non-prelim): 11
length of query: 335
length of database: 191,569,459
effective HSP length: 118
effective length of query: 217
effective length of database: 127,894,771
effective search space: 27753165307
effective search space used: 27753165307
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)