BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019830
         (335 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1EAA|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate
           Dehydrogenase Multienzyme Complex
 pdb|1EAB|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate
           Dehydrogenase Multienzyme Complex
 pdb|1EAC|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate
           Dehydrogenase Multienzyme Complex
 pdb|1EAD|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate
           Dehydrogenase Multienzyme Complex
 pdb|1EAE|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate
           Dehydrogenase Multienzyme Complex
 pdb|1EAF|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate
           Dehydrogenase Multienzyme Complex
          Length = 243

 Score = 31.2 bits (69), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 16/35 (45%), Positives = 21/35 (60%)

Query: 298 VAVLTNSIPAEQPKWSLEAFSLRLLMPLPLPYAKR 332
           VA+L  S  + QP W  +AF  RL++PL L Y  R
Sbjct: 183 VAILGVSKASMQPVWDGKAFQPRLMLPLSLSYDHR 217


>pdb|1DPD|A Chain A, Crystallographic And Enzymatic Investigations On The Role
           Of Ser558, His610 And Asn614 In The Catalytic Mechanism
           Of Azotobacter Vinelandii Dihydrolipoamide
           Acetyltransferase (E2p)
          Length = 243

 Score = 31.2 bits (69), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 16/35 (45%), Positives = 21/35 (60%)

Query: 298 VAVLTNSIPAEQPKWSLEAFSLRLLMPLPLPYAKR 332
           VA+L  S  + QP W  +AF  RL++PL L Y  R
Sbjct: 183 VAILGVSKASMQPVWDGKAFQPRLMLPLSLSYDHR 217


>pdb|1DPC|A Chain A, Crystallographic And Enzymatic Investigations On The Role
           Of Ser558, His610 And Asn614 In The Catalytic Mechanism
           Of Azotobacter Vinelandii Dihydrolipoamide
           Acetyltransferase (E2p)
          Length = 243

 Score = 31.2 bits (69), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 16/35 (45%), Positives = 21/35 (60%)

Query: 298 VAVLTNSIPAEQPKWSLEAFSLRLLMPLPLPYAKR 332
           VA+L  S  + QP W  +AF  RL++PL L Y  R
Sbjct: 183 VAILGVSKASMQPVWDGKAFQPRLMLPLSLSYDHR 217


>pdb|1DPB|A Chain A, Crystallographic And Enzymatic Investigations On The Role
           Of Ser558, His610 And Asn614 In The Catalytic Mechanism
           Of Azotobacter Vinelandii Dihydrolipoamide
           Acetyltransferase (E2p)
          Length = 243

 Score = 30.8 bits (68), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 16/35 (45%), Positives = 21/35 (60%)

Query: 298 VAVLTNSIPAEQPKWSLEAFSLRLLMPLPLPYAKR 332
           VA+L  S  + QP W  +AF  RL++PL L Y  R
Sbjct: 183 VAILGVSKASMQPVWDGKAFQPRLMLPLSLSYDCR 217


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.139    0.440 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,572,383
Number of Sequences: 62578
Number of extensions: 353581
Number of successful extensions: 913
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 905
Number of HSP's gapped (non-prelim): 8
length of query: 335
length of database: 14,973,337
effective HSP length: 99
effective length of query: 236
effective length of database: 8,778,115
effective search space: 2071635140
effective search space used: 2071635140
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)