Query 019830
Match_columns 335
No_of_seqs 226 out of 1243
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 04:52:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019830.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019830hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02869 fatty aldehyde decarb 100.0 6E-108 1E-112 835.1 19.1 318 1-321 112-460 (620)
2 COG3000 ERG3 Sterol desaturase 99.8 1E-19 2.2E-24 172.8 8.3 141 9-162 92-239 (271)
3 KOG0873 C-4 sterol methyl oxid 99.7 9.6E-17 2.1E-21 152.9 6.5 142 2-160 108-260 (283)
4 PF04116 FA_hydroxylase: Fatty 99.6 1.5E-15 3.3E-20 123.4 2.6 107 17-136 2-110 (114)
5 KOG0872 Sterol C5 desaturase [ 99.4 5.6E-13 1.2E-17 126.6 5.2 125 24-163 136-266 (312)
6 KOG0874 Sphingolipid hydroxyla 99.0 1.6E-11 3.4E-16 114.0 -3.0 128 23-159 129-265 (287)
7 PRK14982 acyl-ACP reductase; P 97.0 0.00089 1.9E-08 66.5 5.3 113 203-318 34-164 (340)
8 PLN02434 fatty acid hydroxylas 91.4 0.16 3.5E-06 48.3 3.0 119 28-158 95-228 (237)
9 PLN02601 beta-carotene hydroxy 70.1 14 0.00029 36.4 6.5 48 7-54 127-175 (303)
10 PF01661 Macro: Macro domain; 69.7 20 0.00043 28.7 6.7 63 206-269 43-105 (118)
11 PRK07424 bifunctional sterol d 65.1 18 0.0004 36.9 6.7 49 26-74 18-77 (406)
12 PF13580 SIS_2: SIS domain; PD 56.4 10 0.00022 32.4 2.7 25 239-263 112-136 (138)
13 cd05014 SIS_Kpsf KpsF-like pro 46.7 24 0.00053 28.7 3.4 40 237-277 54-93 (128)
14 PF10991 DUF2815: Protein of u 46.4 41 0.00088 30.9 5.1 70 226-295 27-111 (181)
15 cd05561 Peptidases_S8_4 Peptid 43.3 32 0.00069 31.9 4.0 59 243-301 106-198 (239)
16 PF13278 DUF4066: Putative ami 43.3 22 0.00047 30.7 2.7 64 239-302 75-155 (166)
17 PRK09929 hypothetical protein; 42.9 30 0.00066 28.5 3.4 37 246-282 54-91 (91)
18 TIGR02530 flg_new flagellar op 41.0 21 0.00046 29.7 2.2 23 244-267 38-60 (96)
19 cd04795 SIS SIS domain. SIS (S 41.0 29 0.00064 26.0 2.9 22 243-264 60-81 (87)
20 KOG4701 Chitinase [Cell wall/m 39.6 28 0.00061 36.0 3.2 71 245-318 91-190 (568)
21 PF14488 DUF4434: Domain of un 38.1 33 0.00071 30.7 3.2 25 240-264 61-86 (166)
22 PRK15062 hydrogenase isoenzyme 36.0 13 0.00028 37.8 0.2 69 222-292 37-116 (364)
23 TIGR00762 DegV EDD domain prot 35.4 30 0.00066 32.9 2.6 56 244-299 65-120 (275)
24 TIGR01445 intein_Nterm intein 35.3 47 0.001 25.1 3.2 56 240-298 15-73 (81)
25 cd05006 SIS_GmhA Phosphoheptos 34.8 38 0.00081 29.8 3.0 27 240-266 111-137 (177)
26 PF07338 DUF1471: Protein of u 34.2 52 0.0011 24.4 3.2 15 246-260 20-35 (56)
27 cd03137 GATase1_AraC_1 AraC tr 34.0 47 0.001 29.0 3.5 60 242-301 81-157 (187)
28 cd05008 SIS_GlmS_GlmD_1 SIS (S 34.0 42 0.00091 27.2 2.9 29 239-267 55-83 (126)
29 PF07492 Trehalase_Ca-bi: Neut 33.3 19 0.0004 24.0 0.6 11 254-264 19-29 (30)
30 cd03400 Band_7_1 A subgroup of 32.2 33 0.0007 28.3 2.0 41 225-265 66-107 (124)
31 cd08345 Fosfomycin_RP Fosfomyc 31.7 1.1E+02 0.0024 23.6 5.0 46 244-294 66-112 (113)
32 PF14542 Acetyltransf_CG: GCN5 31.5 53 0.0011 25.6 3.0 22 242-263 40-61 (78)
33 COG3623 SgaU Putative L-xylulo 31.1 48 0.001 32.3 3.2 49 236-293 88-136 (287)
34 PHA03003 palmytilated EEV memb 31.0 52 0.0011 32.9 3.6 57 239-295 58-127 (369)
35 PRK13912 nuclease NucT; Provis 30.9 63 0.0014 28.8 3.8 49 244-294 59-109 (177)
36 cd07476 Peptidases_S8_thiazoli 30.4 79 0.0017 30.0 4.6 58 244-301 125-218 (267)
37 PRK09850 pseudouridine kinase; 30.4 49 0.0011 31.4 3.2 55 244-302 203-264 (313)
38 PF08285 DPM3: Dolichol-phosph 30.2 29 0.00064 28.4 1.4 25 236-260 67-91 (91)
39 cd05017 SIS_PGI_PMI_1 The memb 29.8 54 0.0012 26.9 3.0 27 239-265 52-78 (119)
40 cd01469 vWA_integrins_alpha_su 29.7 41 0.00089 29.5 2.3 22 247-268 122-143 (177)
41 cd05710 SIS_1 A subgroup of th 29.3 67 0.0015 26.5 3.5 29 238-266 55-83 (120)
42 cd05005 SIS_PHI Hexulose-6-pho 29.3 54 0.0012 28.8 3.0 28 239-266 84-111 (179)
43 PF15250 Raftlin: Raftlin 28.4 58 0.0012 34.1 3.4 27 237-264 135-161 (457)
44 PF07894 DUF1669: Protein of u 28.3 52 0.0011 32.4 2.9 54 237-298 134-218 (284)
45 TIGR03127 RuMP_HxlB 6-phospho 28.1 52 0.0011 28.8 2.7 33 235-267 77-109 (179)
46 cd08629 PI-PLCc_delta1 Catalyt 28.1 60 0.0013 31.5 3.3 50 247-311 32-81 (258)
47 COG2388 Predicted acetyltransf 27.9 53 0.0011 27.4 2.5 41 222-264 38-79 (99)
48 cd08595 PI-PLCc_zeta Catalytic 27.8 58 0.0013 31.6 3.1 50 247-311 32-81 (257)
49 cd08630 PI-PLCc_delta3 Catalyt 27.7 59 0.0013 31.6 3.2 50 247-311 32-81 (258)
50 COG5322 Predicted dehydrogenas 27.5 30 0.00064 34.4 1.1 68 237-307 87-156 (351)
51 cd03399 Band_7_flotillin Band_ 27.2 77 0.0017 26.3 3.5 33 238-270 83-116 (128)
52 cd01480 vWA_collagen_alpha_1-V 26.9 52 0.0011 29.1 2.5 46 244-289 127-178 (186)
53 KOG1794 N-Acetylglucosamine ki 26.4 30 0.00065 34.6 0.9 92 232-324 37-138 (336)
54 KOG0539 Sphingolipid fatty aci 26.4 42 0.00092 32.0 1.9 132 16-160 87-233 (240)
55 cd05013 SIS_RpiR RpiR-like pro 26.1 93 0.002 24.9 3.7 38 239-277 69-106 (139)
56 cd08599 PI-PLCc_plant Catalyti 25.7 79 0.0017 30.1 3.6 50 247-311 32-81 (228)
57 TIGR00441 gmhA phosphoheptose 25.6 62 0.0013 28.0 2.7 27 239-265 88-114 (154)
58 cd03138 GATase1_AraC_2 AraC tr 25.6 77 0.0017 27.9 3.4 60 242-301 89-165 (195)
59 COG2313 IndA Uncharacterized e 25.3 55 0.0012 32.1 2.4 51 192-259 210-264 (310)
60 smart00506 A1pp Appr-1"-p proc 25.2 1.6E+02 0.0034 24.0 5.0 42 226-269 79-120 (133)
61 PRK01424 S-adenosylmethionine: 25.1 93 0.002 31.8 4.1 54 240-293 252-314 (366)
62 cd08632 PI-PLCc_eta1 Catalytic 24.6 73 0.0016 30.9 3.2 46 247-307 32-77 (253)
63 TIGR00075 hypD hydrogenase exp 24.6 27 0.00058 35.6 0.2 69 222-292 43-122 (369)
64 PF04227 Indigoidine_A: Indigo 24.4 31 0.00066 34.1 0.6 22 238-259 230-251 (293)
65 PF13480 Acetyltransf_6: Acety 24.4 83 0.0018 25.2 3.1 29 240-268 110-138 (142)
66 cd04077 Peptidases_S8_PCSK9_Pr 24.4 1.3E+02 0.0029 27.5 4.9 18 243-260 132-149 (255)
67 PRK00414 gmhA phosphoheptose i 24.0 85 0.0018 28.4 3.4 29 240-268 121-149 (192)
68 TIGR00696 wecB_tagA_cpsF bacte 23.9 58 0.0013 29.5 2.3 73 244-318 35-109 (177)
69 cd08631 PI-PLCc_delta4 Catalyt 23.4 85 0.0018 30.5 3.4 50 247-311 32-81 (258)
70 PF13624 SurA_N_3: SurA N-term 22.9 69 0.0015 27.1 2.4 23 238-260 76-100 (154)
71 COG0279 GmhA Phosphoheptose is 22.5 89 0.0019 28.8 3.1 22 244-265 123-144 (176)
72 PF14501 HATPase_c_5: GHKL dom 22.4 1.1E+02 0.0024 24.2 3.4 29 242-270 10-39 (100)
73 cd07487 Peptidases_S8_1 Peptid 22.4 1.3E+02 0.0028 27.4 4.3 20 282-301 217-236 (264)
74 PF09312 SurA_N: SurA N-termin 22.3 65 0.0014 26.8 2.1 23 238-260 43-67 (118)
75 cd03408 Band_7_5 A subgroup of 22.3 82 0.0018 28.0 2.9 29 239-267 163-192 (207)
76 COG2131 ComEB Deoxycytidylate 22.2 73 0.0016 29.0 2.5 26 247-285 82-107 (164)
77 TIGR00393 kpsF KpsF/GutQ famil 22.0 95 0.0021 28.7 3.4 39 238-277 55-93 (268)
78 cd08625 PI-PLCc_beta3 Catalyti 21.7 90 0.002 30.3 3.2 46 247-305 32-77 (258)
79 cd08593 PI-PLCc_delta Catalyti 21.6 95 0.0021 30.1 3.3 45 247-306 32-76 (257)
80 PF01380 SIS: SIS domain SIS d 21.5 1.1E+02 0.0023 24.7 3.2 36 240-276 63-98 (131)
81 COG1737 RpiR Transcriptional r 21.2 85 0.0018 30.1 2.9 26 241-266 188-213 (281)
82 cd08342 HPPD_N_like N-terminal 21.0 1.2E+02 0.0025 25.1 3.4 35 246-285 80-114 (136)
83 PRK11302 DNA-binding transcrip 21.0 88 0.0019 29.3 2.9 35 241-277 186-220 (284)
84 cd08598 PI-PLC1c_yeast Catalyt 20.9 98 0.0021 29.6 3.2 44 247-305 32-75 (231)
85 cd01473 vWA_CTRP CTRP for CS 20.7 1E+02 0.0023 27.7 3.3 25 243-267 125-149 (192)
86 PRK10886 DnaA initiator-associ 20.4 1.1E+02 0.0025 28.0 3.5 27 243-269 122-148 (196)
87 PRK00147 queA S-adenosylmethio 20.0 1.3E+02 0.0028 30.4 4.0 54 238-293 228-293 (342)
No 1
>PLN02869 fatty aldehyde decarbonylase
Probab=100.00 E-value=6.3e-108 Score=835.15 Aligned_cols=318 Identities=68% Similarity=1.165 Sum_probs=298.2
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHhcchhhHHHHHhhhcChhhcccc--CCCCCCCCCCceecccCCchHHHHHHHHhhHH
Q 019830 1 MLPGGTQFPIWRLDGVILMALLHAGPVEFVYYWLHRALHHHYLYSR--SHHHSSIVPEPITSVTRPFAEHITYFVLFATP 78 (335)
Q Consensus 1 ~~p~~~~lP~W~~~g~il~~LLh~~~~Df~fYW~HRalH~~~Lwr~--svHHSs~~p~p~Ta~r~HplE~ll~~~l~~iP 78 (335)
++|+++++|.|+++|+++.+++|+++.|++|||.||++|++++|++ ++||++++++|+|+.++++.|.+.+...+++|
T Consensus 112 ~~p~~~~~P~W~~~g~l~~~Llhv~~~Df~fYW~HRllH~~~LYwr~HkvHHss~~~~P~Ts~~HP~~E~L~y~ll~~IP 191 (620)
T PLN02869 112 ILPGASHMPLWRTDGVLITILLHMGPVEFLYYWLHRALHHHYLYSRYHSHHHSSIVTEPITSVIHPFAEHIAYFLLFAIP 191 (620)
T ss_pred hhhhhhcCcccccchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhccCCCCCCchhhhcCcHHHHHHHHHHHHHH
Confidence 3789999999999999999999999999999999999999666665 99999999999999854446888888888899
Q ss_pred HHHHHhccccchhHHHHHHHHHHHHhhhccccceeccCccccccCCceEeeCCCcccC-------CC-------------
Q 019830 79 LITTALTGAGSIVPAFGYITYIDLMNNMGHCNFGLIPKWLFTIFPPLKYLMYTPSPLT-------AS------------- 138 (335)
Q Consensus 79 Ll~~~l~g~~Si~~v~~y~l~~~~~~~~gHsN~el~P~~l~~~lp~Lkyli~TPs~H~-------tN------------- 138 (335)
+++..+.+..|+.++++|+++.+++++++|||+|++|+++++.+|+++|+++||+||+ +|
T Consensus 192 Lllli~~g~~hi~t~~~yli~~~f~~~~gHSN~El~P~~~~~~~ppLkyll~TPsfHdlHHs~fd~NYGlfF~~WDrLFG 271 (620)
T PLN02869 192 LLTTIFTGTASIAAFFGYISYIDFMNNMGHCNFELIPKWLFSIFPPLKYLMYTPSYHSLHHTQFRTNYSLFMPIYDYIYG 271 (620)
T ss_pred HHHHhhcccchHHHHHHHHHHHHHHhcccccCccccccchhccCCcchheecCchHHhHHhccCCcCcccchHHHHhccC
Confidence 9887777777888999999999999999999999999999888899999999999999 66
Q ss_pred ---------CCCCCCCCCCCcceeEEeecCCCCcccchhhhhhhhcCCCCCcCCcchhhhhhhHHHHHHHHHHHHhccee
Q 019830 139 ---------YAAPGELLDDSLDVVYLTHLTTPESIYHMRLGLASLASKPHQHASSEWYKWLLWPVTLFSMMITWIYGRTF 209 (335)
Q Consensus 139 ---------~~~~~~~~~~~~D~Vflth~~~~~s~~h~~~g~~s~~s~p~~~~~~~~~l~~~~p~~~~~~~~~w~~~~~f 209 (335)
||+.+++.+++||+|||||+||++|+||+|+||||+||.|| +++||||||||+|+++|+++|+|||||
T Consensus 272 T~d~~s~~l~e~~~~~~~~~pd~V~l~H~t~~~s~~h~~~~~~s~as~p~---~~~~~l~~~wp~~~~~m~~~w~~~~~f 348 (620)
T PLN02869 272 TMDKSSDTLYEKSLKRPEEIPDVVHLTHLTTPDSIYHLRLGFASLASKPY---ISKWYLRLMWPVTSWSMMLTWIYGRTF 348 (620)
T ss_pred CCCCCchhHHHHhhcCcccCCCEEEEeccCCHHHhhccchHHHHhccCCc---cchhHHHHHHHHHHHHHHHHHHhCCce
Confidence 44545444668999999999999999999999999999999 999999999999999999999999999
Q ss_pred EEeecccCccccceEEEecCCccccccCCchhHHHHHHHHHHHHHHcCCeEEEeeccccccccccccceeeeecCCCceE
Q 019830 210 VVERNRLNKLKLQTWAKSKYNMQYFSQQPNESINRLIEEAILEAEEKGARVISLGLLNQGEELNRYGGLFVHKNPELKIK 289 (335)
Q Consensus 210 ~~~~~~~~~~~~q~w~~pr~~~~y~~~~~~~~in~~ie~ail~a~~~g~kv~slg~lN~~~~ln~~g~l~v~~~p~l~vr 289 (335)
++|+|+|||+++|||+||||||||++|+++|+||++|||||+||||+||||+|||+|||||+|||||||||+|||+||||
T Consensus 349 ~~~~~~~~~~~~~tw~vpr~~~qy~~~~~~~~in~~Ie~ail~ad~~Gvkv~sLg~LNk~~~LN~~G~l~v~k~p~L~vr 428 (620)
T PLN02869 349 VLERNRFNKLNLQTWVIPKYKIQYLLKWQNESINSLIEEAILEADKRGVKVLSLGLLNQGEELNRYGELYIHRNPKLKIK 428 (620)
T ss_pred EeeeeeccceeeeEEEeccccccccCchhhhhHHHHHHHHHHHHHhcCCEEEechhcchhhhhcCCceEeeecCCCcceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCceehhhhhccCCCCCcceeeecccccc
Q 019830 290 VVDGSSLAVAVLTNSIPAEQPKWSLEAFSLRL 321 (335)
Q Consensus 290 vv~g~~l~aavvl~~ip~~~~~~~l~~~~~~~ 321 (335)
|||||||||||||||||+|||||||||+.-.+
T Consensus 429 vv~G~tLtaAvvln~ip~~~~~vfl~G~~sK~ 460 (620)
T PLN02869 429 VVDGSSLAVAVVLNSIPKGTTQVLFRGNLSKV 460 (620)
T ss_pred EEeCCchHHHHHHHhcCCCCceEEEecCccHH
Confidence 99999999999999999999999999987654
No 2
>COG3000 ERG3 Sterol desaturase [Lipid metabolism]
Probab=99.80 E-value=1e-19 Score=172.79 Aligned_cols=141 Identities=26% Similarity=0.305 Sum_probs=110.9
Q ss_pred CchhHHHHHHHHHHHhcchhhHHHHHhhhcCh-hhcccc-CCCCCCCCCCceecccCCchHHHHHHHHhhHHHHHHHhcc
Q 019830 9 PIWRLDGVILMALLHAGPVEFVYYWLHRALHH-HYLYSR-SHHHSSIVPEPITSVTRPFAEHITYFVLFATPLITTALTG 86 (335)
Q Consensus 9 P~W~~~g~il~~LLh~~~~Df~fYW~HRalH~-~~Lwr~-svHHSs~~p~p~Ta~r~HplE~ll~~~l~~iPLl~~~l~g 86 (335)
|.+....+++++++. |+++||.||++|+ +.+|+. ++||++++++++|+.|.||+|.++......+|+....
T Consensus 92 ~~~~~l~~~~~~~~~----D~~~Y~~HR~~H~~~~~w~~H~~HH~~~~~~~~t~~~~hp~e~ll~~~~~~~~~~l~~--- 164 (271)
T COG3000 92 PLPFALQLLLAFLFL----DLGYYWAHRLLHRVPLLWAFHKVHHSSEVPDPLTALRFHPLEILLLAFLGLLPLLLLG--- 164 (271)
T ss_pred chHHHHHHHHHHHHH----HHHHHHHHHHHhhhHHHHHHHHhhcCcccCCchhhhhcChHHHHHHHHHHHHHHHHhc---
Confidence 344455677777777 9999999999999 888888 9999999999999999999999999877666654432
Q ss_pred ccchhHHHHHHHHHHHHhhhccccceeccCccccccCCceEeeCCCcccCCC-CCC-CCCCCC---CCcceeEEeecCCC
Q 019830 87 AGSIVPAFGYITYIDLMNNMGHCNFGLIPKWLFTIFPPLKYLMYTPSPLTAS-YAA-PGELLD---DSLDVVYLTHLTTP 161 (335)
Q Consensus 87 ~~Si~~v~~y~l~~~~~~~~gHsN~el~P~~l~~~lp~Lkyli~TPs~H~tN-~~~-~~~~~~---~~~D~Vflth~~~~ 161 (335)
.+..++..+.++..+.+.++|||++. | + .+++++++++||++|+-. +.. .++|+. ..||++|+|.+...
T Consensus 165 -~~~~~~~~~~~~~~~~~~~~H~~~~~-~-~---~~~~~~~v~~~p~~H~lHH~~~~~~~Nyg~~~~~WDrlFGT~~~~~ 238 (271)
T COG3000 165 -LSPVAVALLFIFLLFWAVLIHSNLDL-P-L---PLGWLRYVFNTPRHHRLHHSKDPYDKNYGVTLTFWDRLFGTYHPPD 238 (271)
T ss_pred -CCHHHHHHHHHHHHHHHHHHhcCccc-c-C---CcccceeeecCchHHHHhccCCCCCCcchhhhHHHHHHcccCCCCc
Confidence 45667778888999999999999985 3 1 135677788999999911 111 456654 38999999977664
Q ss_pred C
Q 019830 162 E 162 (335)
Q Consensus 162 ~ 162 (335)
+
T Consensus 239 ~ 239 (271)
T COG3000 239 E 239 (271)
T ss_pred c
Confidence 3
No 3
>KOG0873 consensus C-4 sterol methyl oxidase [Lipid transport and metabolism]
Probab=99.66 E-value=9.6e-17 Score=152.90 Aligned_cols=142 Identities=24% Similarity=0.403 Sum_probs=115.5
Q ss_pred CCCCCCCCchh--HHHHHHHHHHHhcchhhHHHHHhhhcChhhcccc--CCCCCCCCCCceecccCCchHHHHHHHHhhH
Q 019830 2 LPGGTQFPIWR--LDGVILMALLHAGPVEFVYYWLHRALHHHYLYSR--SHHHSSIVPEPITSVTRPFAEHITYFVLFAT 77 (335)
Q Consensus 2 ~p~~~~lP~W~--~~g~il~~LLh~~~~Df~fYW~HRalH~~~Lwr~--svHHSs~~p~p~Ta~r~HplE~ll~~~l~~i 77 (335)
+|.-..+|.|. ...+++++++. |+++||.||++|++++||. |+||....|-..|+.++||+|+++.++.
T Consensus 108 ~~~~~plPt~~~~l~~l~i~~liE----d~~fY~~HRL~H~~~~Yk~iHKvHHe~taPf~~sa~YaHp~E~~~lg~~--- 180 (283)
T KOG0873|consen 108 LPSGAPLPSWKEMLAQLVVFFLIE----DIGFYWSHRLFHHKWLYKYIHKVHHEYTAPFGLSAEYAHPLEHLFLGLG--- 180 (283)
T ss_pred CCcCCCCCcHHHHHHHHHHHHHHH----HHHHHHHHHHhcchHHHHHHHhhhhcccCchhHhhhhcCHHHHHHcCCh---
Confidence 35556688886 34688888888 9999999999999999999 9999999999999999999999987654
Q ss_pred HHHHHHhccccchhHHHHHHHHHHHHhhhccccceeccCccccccCCceEeeCCCcccC-------CCCCCCCCCCCCCc
Q 019830 78 PLITTALTGAGSIVPAFGYITYIDLMNNMGHCNFGLIPKWLFTIFPPLKYLMYTPSPLT-------ASYAAPGELLDDSL 150 (335)
Q Consensus 78 PLl~~~l~g~~Si~~v~~y~l~~~~~~~~gHsN~el~P~~l~~~lp~Lkyli~TPs~H~-------tN~~~~~~~~~~~~ 150 (335)
|..+..+.++ ++.+.++++.+..+.+...|||+++ |..+.+.+|+ | .+..+|+ +|+..... .+
T Consensus 181 ~~~~p~~~~~-H~~t~wiw~~l~i~~t~~~HsGY~f-Pwsl~~~~pf--y--~ga~~HD~HH~~f~~n~~~~f~----~~ 250 (283)
T KOG0873|consen 181 TVMGPALLCG-HVITLWIWIALRILETVESHSGYDF-PWSLSKLIPF--Y--GGAEHHDYHHLVFIGNFASVFG----YL 250 (283)
T ss_pred hhhhhHHhhh-HHHHHHHHHHHHHHHHhhccCCCCC-CccccccCcc--c--CCCcccchhhhhccccccchhH----HH
Confidence 3333333222 7889999999999999999999994 9888877665 2 4677888 56666555 89
Q ss_pred ceeEEeecCC
Q 019830 151 DVVYLTHLTT 160 (335)
Q Consensus 151 D~Vflth~~~ 160 (335)
|+++||..+-
T Consensus 251 D~i~GTd~~~ 260 (283)
T KOG0873|consen 251 DRIHGTDSTY 260 (283)
T ss_pred HHHhccCccH
Confidence 9999998754
No 4
>PF04116 FA_hydroxylase: Fatty acid hydroxylase superfamily; InterPro: IPR006694 This superfamily includes fatty acid and carotene hydroxylases and sterol desaturases. Beta-carotene hydroxylase is involved in zeaxanthin synthesis by hydroxylating beta-carotene, but the enzyme may be involved in other pathways []. This family includes C-5 sterol desaturase and C-4 sterol methyl oxidase. Members of this family are involved in cholesterol biosynthesis and biosynthesis a plant cuticular wax. These enzymes contain two copies of a HXHH motif. Members of this family are integral membrane proteins.; GO: 0005506 iron ion binding, 0016491 oxidoreductase activity, 0006633 fatty acid biosynthetic process, 0055114 oxidation-reduction process
Probab=99.55 E-value=1.5e-15 Score=123.36 Aligned_cols=107 Identities=26% Similarity=0.348 Sum_probs=83.3
Q ss_pred HHHHHHHhcchhhHHHHHhhhcCh-hhcccc-CCCCCCCCCCceecccCCchHHHHHHHHhhHHHHHHHhccccchhHHH
Q 019830 17 ILMALLHAGPVEFVYYWLHRALHH-HYLYSR-SHHHSSIVPEPITSVTRPFAEHITYFVLFATPLITTALTGAGSIVPAF 94 (335)
Q Consensus 17 il~~LLh~~~~Df~fYW~HRalH~-~~Lwr~-svHHSs~~p~p~Ta~r~HplE~ll~~~l~~iPLl~~~l~g~~Si~~v~ 94 (335)
++++++. |+++||.||++|+ +++|+. +.||++++++++++.+.+|+|.++...+.. ++..+.+..+..++.
T Consensus 2 ~~~~l~~----d~~~Y~~HRl~H~~~~l~~~H~~HH~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 74 (114)
T PF04116_consen 2 LLGFLLW----DFWEYWMHRLLHKIPFLWRIHKVHHSPKNPTPLSAFRFHPLEALLLALLPL---LLPLLLLPFHALAFL 74 (114)
T ss_pred eeeHHHH----HHHHHHHHHHHhcCchHHHHHHHHhCCcccCchHHHHcChHHHHHHHHHHH---HHHHHHHhHhHHHHH
Confidence 3456666 9999999999995 999977 999999999999999999999988776532 222222334566777
Q ss_pred HHHHHHHHHhhhccccceeccCccccccCCceEeeCCCcccC
Q 019830 95 GYITYIDLMNNMGHCNFGLIPKWLFTIFPPLKYLMYTPSPLT 136 (335)
Q Consensus 95 ~y~l~~~~~~~~gHsN~el~P~~l~~~lp~Lkyli~TPs~H~ 136 (335)
++.++..+.+.++|||+.. + ..+..+++..+|++|+
T Consensus 75 ~~~~~~~~~~~~~H~~~~~-~-----~~~~~~~~~~~~~~H~ 110 (114)
T PF04116_consen 75 LGIALFYLWYIFIHSGYHH-R-----FPPRLRYLFVTPRHHD 110 (114)
T ss_pred HHHHHHHHHHHHhhcCccC-C-----CCCcchhHhcCHHHHH
Confidence 8888999999999999821 1 1245677788999986
No 5
>KOG0872 consensus Sterol C5 desaturase [Lipid transport and metabolism]
Probab=99.36 E-value=5.6e-13 Score=126.60 Aligned_cols=125 Identities=18% Similarity=0.157 Sum_probs=93.9
Q ss_pred hcchhhHHHHHhhhcChhhcccc--CCCCCCCCCCceecccCCchHHHHHHHHhhH-HHHHHHhccccchhHHHHHHHHH
Q 019830 24 AGPVEFVYYWLHRALHHHYLYSR--SHHHSSIVPEPITSVTRPFAEHITYFVLFAT-PLITTALTGAGSIVPAFGYITYI 100 (335)
Q Consensus 24 ~~~~Df~fYW~HRalH~~~Lwr~--svHHSs~~p~p~Ta~r~HplE~ll~~~l~~i-PLl~~~l~g~~Si~~v~~y~l~~ 100 (335)
..++||.+||.||.+|++.+|++ +.||+++..+|++|.++||+|.+++.+-..| |++ ...+..+......+.
T Consensus 136 lfF~Df~iYw~HR~lH~~~vy~~LH~~HH~~~~~tpfAslafhpidg~lqaip~~I~~Fi-----~Plh~~t~L~l~~f~ 210 (312)
T KOG0872|consen 136 LFFTDFGIYWAHRELHHRGVYKRLHKPHHIWNICTPFASLAFHPIDGFLQAIPYHIYPFI-----FPLHKVTYLSLFTFV 210 (312)
T ss_pred HHHHHHHHHHHHHHHhhhHHHhhhcchhhhhhccCchhhhhcCcchhHhhhchhHheeee-----ecchHHHHHHHHHHH
Confidence 33459999999999999888887 9999999999999999999999988765444 222 122333445555667
Q ss_pred HHHhhhccccceeccCccccccCCceEeeCCCcccCCCCCCCCCCCC---CCcceeEEeecCCCCc
Q 019830 101 DLMNNMGHCNFGLIPKWLFTIFPPLKYLMYTPSPLTASYAAPGELLD---DSLDVVYLTHLTTPES 163 (335)
Q Consensus 101 ~~~~~~gHsN~el~P~~l~~~lp~Lkyli~TPs~H~tN~~~~~~~~~---~~~D~Vflth~~~~~s 163 (335)
.+++++.|.+.-. -+.+.+++|+||+..+-+.++|+. ..||+.|++.....++
T Consensus 211 ~iwt~~IHd~~~~----------~l~~~ingaahHtvHH~~f~~NYG~~tilwDrmfgSfr~p~~~ 266 (312)
T KOG0872|consen 211 NIWTISIHDGIYG----------SLNPPINGAAHHTVHHTYFDYNYGQYTILWDRMFGSFRAPDHE 266 (312)
T ss_pred HhHheeeeccccc----------cccCccccccccceeeeeEecCCCcEEEeHHhccCcccCcccc
Confidence 8899999997532 234567999999955555666543 4899999998866543
No 6
>KOG0874 consensus Sphingolipid hydroxylase [Lipid transport and metabolism]
Probab=99.02 E-value=1.6e-11 Score=114.01 Aligned_cols=128 Identities=19% Similarity=0.203 Sum_probs=92.9
Q ss_pred HhcchhhHHHHHhhhcCh-hhcccc--CCCCCCCCCCceecccCCchHHHHHHHHhhHHHHHHHhccccchhHHHHHHHH
Q 019830 23 HAGPVEFVYYWLHRALHH-HYLYSR--SHHHSSIVPEPITSVTRPFAEHITYFVLFATPLITTALTGAGSIVPAFGYITY 99 (335)
Q Consensus 23 h~~~~Df~fYW~HRalH~-~~Lwr~--svHHSs~~p~p~Ta~r~HplE~ll~~~l~~iPLl~~~l~g~~Si~~v~~y~l~ 99 (335)
.+++.|.|.|.+||.||. ++||+. ++||+-.+|-+..+.+.||+|.++...+.+.- .++..+.|.-.-++++.+
T Consensus 129 aflviDtWQYF~HRymH~NK~LYk~iHs~HHrL~VPYayGALyNhP~EGllLDT~G~gl---a~l~sglspr~aiifFtf 205 (287)
T KOG0874|consen 129 AFLVIDTWQYFLHRYMHMNKFLYKHIHSQHHRLIVPYAYGALYNHPVEGLLLDTIGGGL---AFLLSGLSPRTAIIFFTF 205 (287)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhceeEecchhhhhhhcCcchhhhhhhhchHH---HHHHcCCCccceEEEEEe
Confidence 344559999999999999 999999 99999999999999999999999988763321 122223344455566777
Q ss_pred HHHHhhhccccceeccCccccccCCceEeeCCCcccC-CCCCCCC-CCCC----CCcceeEEeecC
Q 019830 100 IDLMNNMGHCNFGLIPKWLFTIFPPLKYLMYTPSPLT-ASYAAPG-ELLD----DSLDVVYLTHLT 159 (335)
Q Consensus 100 ~~~~~~~gHsN~el~P~~l~~~lp~Lkyli~TPs~H~-tN~~~~~-~~~~----~~~D~Vflth~~ 159 (335)
...-++..|||+- +|...+++ .+-+...+|+ -.+.+=. +|.. -.||+|++|...
T Consensus 206 aTiKTVDDHCGy~-lP~dpfqm-----~F~NNa~YHDiHHQ~yG~k~NFsQPFFtfWD~ilgTYmp 265 (287)
T KOG0874|consen 206 ATIKTVDDHCGYW-LPGDPFQM-----FFPNNAAYHDIHHQLYGTKYNFSQPFFTFWDRILGTYMP 265 (287)
T ss_pred eeeeeeccccccc-cCCCceeE-----eccCCchhhhhhhhhhccccccCCcHHHHHHHHHhhcCC
Confidence 7888999999996 58765554 2226888888 2222222 2322 279999999653
No 7
>PRK14982 acyl-ACP reductase; Provisional
Probab=97.02 E-value=0.00089 Score=66.49 Aligned_cols=113 Identities=12% Similarity=0.146 Sum_probs=76.7
Q ss_pred HHhcceeEEeecccCccc---cceEEEec--CCccccccCCchhHHHHHHHHHHHHHHcCCeEEEeeccccccccccccc
Q 019830 203 WIYGRTFVVERNRLNKLK---LQTWAKSK--YNMQYFSQQPNESINRLIEEAILEAEEKGARVISLGLLNQGEELNRYGG 277 (335)
Q Consensus 203 w~~~~~f~~~~~~~~~~~---~q~w~~pr--~~~~y~~~~~~~~in~~ie~ail~a~~~g~kv~slg~lN~~~~ln~~g~ 277 (335)
|....+|++++-+.+.-. .+-|.|.- .+=|- ...+.+..=+.|.+|+..|++.|++|..||...+--. +++.
T Consensus 34 ~~~~~p~~~~~~~v~S~~g~~~eg~~i~~~~~pe~l-~~~~~~~~~~~~~~a~~~a~~~G~~i~~Lg~~tsiv~--~~~~ 110 (340)
T PRK14982 34 WCSAPPQLVDHIEVTSATGQTIEGKYIESCFLPEML-SNRRFKTARRKVLNAMALAQKKGINITALGGFSSIIF--ENFN 110 (340)
T ss_pred HhhCCCeEeeeEEEEeCCCCEEEEEEEeCCCCHHHH-hccChHHHHHHHHHHHHHHHHCCCeEEEcCChHHHhc--CCcc
Confidence 444668999888776553 36677633 22233 3323444446788899999999999999999887543 2223
Q ss_pred eee-eecCCCce---EeecCCceehhhhhccCCC---------CCcceeeeccc
Q 019830 278 LFV-HKNPELKI---KVVDGSSLAVAVLTNSIPA---------EQPKWSLEAFS 318 (335)
Q Consensus 278 l~v-~~~p~l~v---rvv~g~~l~aavvl~~ip~---------~~~~~~l~~~~ 318 (335)
+-+ ++-.++++ ++-.|||+||++....+.. ..|.|++||++
T Consensus 111 ~~~~~~~r~i~ie~~~~TtGNs~T~~ll~~~V~la~~~lg~~l~~k~VLVtGAt 164 (340)
T PRK14982 111 LLQHKQVRNTTLEWERFTTGNTHTAYVICRQVEQNAPRLGIDLSKATVAVVGAT 164 (340)
T ss_pred cccccccccceeccccccCCchhHHHHHHHHHHHhHHHhccCcCCCEEEEEccC
Confidence 332 44467777 8999999999988765432 33569999985
No 8
>PLN02434 fatty acid hydroxylase
Probab=91.36 E-value=0.16 Score=48.31 Aligned_cols=119 Identities=22% Similarity=0.142 Sum_probs=56.0
Q ss_pred hhHHHHHhh-hcChh--------hcccc-CCCCCCCCCCceecccCCchHHHHHHHHhhHHHHHHHhcc----ccchhHH
Q 019830 28 EFVYYWLHR-ALHHH--------YLYSR-SHHHSSIVPEPITSVTRPFAEHITYFVLFATPLITTALTG----AGSIVPA 93 (335)
Q Consensus 28 Df~fYW~HR-alH~~--------~Lwr~-svHHSs~~p~p~Ta~r~HplE~ll~~~l~~iPLl~~~l~g----~~Si~~v 93 (335)
-+..|..|| ++|.+ ..+.. ..||... .-.....+.|.-.++....+...+.. .++. ......+
T Consensus 95 tl~EY~lHRflfH~~p~~~~~~~~hfllHg~HH~~P--~D~~rLv~PP~~~~~l~~~~~~l~~~-~~~~~~a~~~~~G~l 171 (237)
T PLN02434 95 TLLEYILHRFLFHIKTKSYWGNTAHYLLHGCHHKHP--MDGLRLVFPPAATAILCVPFWNLIAL-FATPATAPALFGGGL 171 (237)
T ss_pred HHHHHHHHHHHHcCCCcchHHHHHHHHHHHHhhcCC--CCCCCeecCcHHHHHHHHHHHHHHHH-HcchhHHHHHHHHHH
Confidence 788999999 66741 12223 6899543 22223335665543333222211100 0000 0001123
Q ss_pred HHHHHHHHHHhhhccccceeccC-ccccccCCceEeeCCCcccCCCCCCCCCCCCCCcceeEEeec
Q 019830 94 FGYITYIDLMNNMGHCNFGLIPK-WLFTIFPPLKYLMYTPSPLTASYAAPGELLDDSLDVVYLTHL 158 (335)
Q Consensus 94 ~~y~l~~~~~~~~gHsN~el~P~-~l~~~lp~Lkyli~TPs~H~tN~~~~~~~~~~~~D~Vflth~ 158 (335)
.+|+.| +..-...|.+ + |+ .+.+ .+|. ++-.||-.|+++-..-....||+||+|--
T Consensus 172 ~gYl~Y-d~~Hy~lH~~-~--p~~~~~r---~lkr--~H~~HHfk~~~~~fGVTs~~wD~vFGT~~ 228 (237)
T PLN02434 172 LGYVMY-DCTHYFLHHG-Q--PSTDVLR---NLKK--YHLNHHFRDQDKGFGITSSLWDRVFGTLP 228 (237)
T ss_pred HHHHHH-HHHHHHHHhc-C--cchHHHH---HHHH--HHHHHcCCCCCCCCCcCchHHHHhcCCCC
Confidence 445433 4444555553 2 32 1111 2333 34445546666655434569999999963
No 9
>PLN02601 beta-carotene hydroxylase
Probab=70.09 E-value=14 Score=36.38 Aligned_cols=48 Identities=27% Similarity=0.432 Sum_probs=31.8
Q ss_pred CCCchhHHHHHHHHHHHhcchhhHHHHHhhhcChhhcccc-CCCCCCCC
Q 019830 7 QFPIWRLDGVILMALLHAGPVEFVYYWLHRALHHHYLYSR-SHHHSSIV 54 (335)
Q Consensus 7 ~lP~W~~~g~il~~LLh~~~~Df~fYW~HRalH~~~Lwr~-svHHSs~~ 54 (335)
+.|.=...+.++.++..++.+|++=+|.||..=|.++|.. +=||...+
T Consensus 127 ~~p~~em~~~~al~lgtfvgMEf~Aw~aHKYvMHG~LW~lH~sHH~Pr~ 175 (303)
T PLN02601 127 EVSMLEMFGTFALSVGAAVGMEFWARWAHRALWHDSLWNMHESHHKPRE 175 (303)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhcCCCCC
Confidence 4453222233334454555669999999997777899999 66776553
No 10
>PF01661 Macro: Macro domain; InterPro: IPR002589 The Macro or A1pp domain is a module of about 180 amino acids which can bind ADP-ribose, an NAD metabolite or related ligands. Binding to ADP-ribose could be either covalent or non-covalent []: in certain cases it is believed to bind non-covalently []; while in other cases (such as Aprataxin) it appears to bind both non-covalently through a zinc finger motif, and covalently through a separate region of the protein []. The domain was described originally in association with ADP-ribose 1''-phosphate (Appr-1''-P) processing activity (A1pp) of the yeast YBR022W protein []. The domain is also called Macro domain as it is the C-terminal domain of mammalian core histone macro-H2A [, ]. Macro domain proteins can be found in eukaryotes, in (mostly pathogenic) bacteria, in archaea and in ssRNA viruses, such as coronaviruses, Rubella and Hepatitis E viruses. In vertebrates the domain occurs e.g. in histone macroH2A, in predicted poly-ADP-ribose polymerases (PARPs) and in B aggressive lymphoma (BAL) protein. The macro domain can be associated with catalytic domains, such as PARP, or sirtuin. The Macro domain can recognise ADP-ribose or in some cases poly-ADP-ribose, which can be involved in ADP-ribosylation reactions that occur in important processes, such as chromatin biology, DNA repair and transcription regulation []. The human macroH2A1.1 Macro domain binds an NAD metabolite O-acetyl-ADP-ribose []. The Macro domain has been suggested to play a regulatory role in ADP-ribosylation, which is involved in inter- and intracellular signaling, transcriptional regulation, DNA repair pathways and maintenance of genomic stability, telomere dynamics, cell differentiation and proliferation, and necrosis and apoptosis. The 3D structure of the Macro domain has a mixed alpha/beta fold of a mixed beta sheet sandwiched between four helices. Several Macro domain only domains are shorter than the structure of AF1521 and lack either the first strand or the C-terminal helix 5. Well conserved residues form a hydrophobic cleft and cluster around the AF1521-ADP-ribose binding site [, , , ]. ; PDB: 2DX6_A 2XD7_D 3Q71_A 2FAV_B 1SPV_A 3EKE_A 3EJF_A 1YD9_B 3GPG_B 3GPQ_A ....
Probab=69.72 E-value=20 Score=28.69 Aligned_cols=63 Identities=21% Similarity=0.286 Sum_probs=45.4
Q ss_pred cceeEEeecccCccccceEEEecCCccccccCCchhHHHHHHHHHHHHHHcCCeEEEeeccccc
Q 019830 206 GRTFVVERNRLNKLKLQTWAKSKYNMQYFSQQPNESINRLIEEAILEAEEKGARVISLGLLNQG 269 (335)
Q Consensus 206 ~~~f~~~~~~~~~~~~q~w~~pr~~~~y~~~~~~~~in~~ie~ail~a~~~g~kv~slg~lN~~ 269 (335)
|+..+.+.+.+.-...=-.+.|+|.-+ .-+.+.+.+.+-+++++..|+++++|.|.+=++.-+
T Consensus 43 G~~~~t~~~~l~~~~Iih~v~P~~~~~-~~~~~~~~L~~~~~~~l~~a~~~~~~sIa~P~ig~G 105 (118)
T PF01661_consen 43 GEVIVTPGGNLPCKYIIHAVGPTYNSP-GEKNSYEALESAYRNALQKAEENGIKSIAFPAIGTG 105 (118)
T ss_dssp TSEEEEEETTSSSSEEEEEEEEETTTS-TSTTHHHHHHHHHHHHHHHHHHTTTSEEEEESTTSS
T ss_pred CCeeeecCCCccccceEEEecceeccc-cccccHHHHHHHHHHHHHHHHHcCCcccccCcccCC
Confidence 556667766665222223355887654 566778889999999999999999999988776543
No 11
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=65.08 E-value=18 Score=36.88 Aligned_cols=49 Identities=22% Similarity=0.265 Sum_probs=39.6
Q ss_pred chhhHHHHHhhhcCh-hhcccc-CCCCCCCCCCcee---------cccCCchHHHHHHHH
Q 019830 26 PVEFVYYWLHRALHH-HYLYSR-SHHHSSIVPEPIT---------SVTRPFAEHITYFVL 74 (335)
Q Consensus 26 ~~Df~fYW~HRalH~-~~Lwr~-svHHSs~~p~p~T---------a~r~HplE~ll~~~l 74 (335)
.+|..+=.+|-+.|+ .+|+|. ..||..-.++-.- ..++.+.|+++..++
T Consensus 18 ~~~~~~d~~h~~~h~~~~l~~~h~~hh~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 77 (406)
T PRK07424 18 WVEIVRDSYHALAHQWNPLYRLHNWHHRVFRPDLSVVSEEIYRKAHWYNDVPEALVMLLF 77 (406)
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHhHHhhcCCcCCcccHHHHhhhhhhcCCHHHHHHHHH
Confidence 348888888999998 999999 9999988777655 568899997766554
No 12
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=56.36 E-value=10 Score=32.37 Aligned_cols=25 Identities=40% Similarity=0.481 Sum_probs=20.1
Q ss_pred chhHHHHHHHHHHHHHHcCCeEEEe
Q 019830 239 NESINRLIEEAILEAEEKGARVISL 263 (335)
Q Consensus 239 ~~~in~~ie~ail~a~~~g~kv~sl 263 (335)
.-+-|..+-+|+.+|.++|+||+++
T Consensus 112 ~SG~s~~vi~a~~~Ak~~G~~vIal 136 (138)
T PF13580_consen 112 NSGNSPNVIEAAEEAKERGMKVIAL 136 (138)
T ss_dssp SSS-SHHHHHHHHHHHHTT-EEEEE
T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEE
Confidence 3456788999999999999999987
No 13
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=46.67 E-value=24 Score=28.74 Aligned_cols=40 Identities=13% Similarity=0.158 Sum_probs=28.9
Q ss_pred CCchhHHHHHHHHHHHHHHcCCeEEEeeccccccccccccc
Q 019830 237 QPNESINRLIEEAILEAEEKGARVISLGLLNQGEELNRYGG 277 (335)
Q Consensus 237 ~~~~~in~~ie~ail~a~~~g~kv~slg~lN~~~~ln~~g~ 277 (335)
....+=|+.+.+++..|.++|+||+++-.-.. ..|-+...
T Consensus 54 iS~sG~t~~~~~~~~~a~~~g~~vi~iT~~~~-s~la~~ad 93 (128)
T cd05014 54 ISNSGETDELLNLLPHLKRRGAPIIAITGNPN-STLAKLSD 93 (128)
T ss_pred EeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCC-CchhhhCC
Confidence 34556788999999999999999999976443 33433333
No 14
>PF10991 DUF2815: Protein of unknown function (DUF2815); InterPro: IPR022595 This entry is represented by Bacteriophage APSE-1, protein 50. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=46.36 E-value=41 Score=30.92 Aligned_cols=70 Identities=21% Similarity=0.267 Sum_probs=44.2
Q ss_pred EecCCccccccCCchhHHHHHHHHHHHHHHcCC-eEEEeeccc---c-----ccccc---c---ccceeeeecCCCceEe
Q 019830 226 KSKYNMQYFSQQPNESINRLIEEAILEAEEKGA-RVISLGLLN---Q-----GEELN---R---YGGLFVHKNPELKIKV 290 (335)
Q Consensus 226 ~pr~~~~y~~~~~~~~in~~ie~ail~a~~~g~-kv~slg~lN---~-----~~~ln---~---~g~l~v~~~p~l~vrv 290 (335)
=|+|+....+|.....-.+.||+||.+|-+.|. +..-.+.+. | ++.-. + .|..|++..-+-|-.|
T Consensus 27 ~~KYs~t~lipK~d~~t~~~I~~Ai~~a~~~~~~~k~~~~~~~~~~k~plrDGD~~~~~d~~~y~g~~~i~A~sk~~P~v 106 (181)
T PF10991_consen 27 EPKYSATLLIPKSDKETIAAIKAAIEAAIEEGWGNKWKGKKIPANLKLPLRDGDEKRPSDGEEYEGHYFINASSKKRPGV 106 (181)
T ss_pred CcceeEEEEEcCCCHHHHHHHHHHHHHHHHhcccccccccccCccccccccCCCcccCCCCcccCccEEEecCCCCCCeE
Confidence 688999999987766656678888888777766 221122211 1 11111 2 4567777777778888
Q ss_pred ecCCc
Q 019830 291 VDGSS 295 (335)
Q Consensus 291 v~g~~ 295 (335)
||.+.
T Consensus 107 vD~~~ 111 (181)
T PF10991_consen 107 VDRQK 111 (181)
T ss_pred EcCCC
Confidence 88765
No 15
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=43.29 E-value=32 Score=31.93 Aligned_cols=59 Identities=27% Similarity=0.343 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCC----------------------eEEEeecccccccc----ccc--------cceeeeecCCCce
Q 019830 243 NRLIEEAILEAEEKGA----------------------RVISLGLLNQGEEL----NRY--------GGLFVHKNPELKI 288 (335)
Q Consensus 243 n~~ie~ail~a~~~g~----------------------kv~slg~lN~~~~l----n~~--------g~l~v~~~p~l~v 288 (335)
|+.+++||.+|.++|+ .||+-|+.|++.++ |.| |+-.....|+-+.
T Consensus 106 ~~~l~~ai~~a~~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~~~~~~~~~s~~g~~~di~ApG~~i~~~~~~~~~ 185 (239)
T cd05561 106 NALLAAAVAAAAARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVDARGRLYREANRGAHVDFAAPGVDVWVAAPGGGY 185 (239)
T ss_pred CHHHHHHHHHHHHCCCEEEEecCCCCCCCCccCcccCCCceEEEeecCCCCccccCCCCCcceEEccccceecccCCCCE
Q ss_pred EeecCCceehhhh
Q 019830 289 KVVDGSSLAVAVL 301 (335)
Q Consensus 289 rvv~g~~l~aavv 301 (335)
+.+.|+|++|+.|
T Consensus 186 ~~~sGTS~AaP~v 198 (239)
T cd05561 186 RYVSGTSFAAPFV 198 (239)
T ss_pred EEeCCHHHHHHHH
No 16
>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C ....
Probab=43.26 E-value=22 Score=30.65 Aligned_cols=64 Identities=13% Similarity=0.196 Sum_probs=43.5
Q ss_pred chhHHHHHHHHHHHHHHcCCeEEEee----------ccccccc--cccccceeeeecCCCceE-----eecCCceehhhh
Q 019830 239 NESINRLIEEAILEAEEKGARVISLG----------LLNQGEE--LNRYGGLFVHKNPELKIK-----VVDGSSLAVAVL 301 (335)
Q Consensus 239 ~~~in~~ie~ail~a~~~g~kv~slg----------~lN~~~~--ln~~g~l~v~~~p~l~vr-----vv~g~~l~aavv 301 (335)
...-+..+.+.+.++.+.|..|.|.+ +||..+. -...-+.+-+++|+.+++ |.||+-.||+..
T Consensus 75 ~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~aGlL~g~~~tt~~~~~~~l~~~~p~~~~~~~~~~v~dg~i~Ta~g~ 154 (166)
T PF13278_consen 75 AAAKDPALLDWLRQQHAQGTYIAAICTGALLLAEAGLLDGRRATTHWSLAEALRERFPNVNVVSDQLFVDDGNIITAGGP 154 (166)
T ss_dssp HHTT-HHHHHHHHHHHCCTSEEEEETTHHHHHHHTTTTTTSEE---GGGHHHHHHCTTCEEE-TSSSEEEETTEEEESSC
T ss_pred hcccCHHHHHHhhhhhccceEEeeeehHHHHHhhhhccCcccccchHHHHHHHHHhCCCccccCCCEEEECCCeEEecHH
Confidence 34667888899999999999999874 4552211 112345566788887665 789999998764
Q ss_pred h
Q 019830 302 T 302 (335)
Q Consensus 302 l 302 (335)
.
T Consensus 155 ~ 155 (166)
T PF13278_consen 155 T 155 (166)
T ss_dssp C
T ss_pred H
Confidence 3
No 17
>PRK09929 hypothetical protein; Provisional
Probab=42.87 E-value=30 Score=28.50 Aligned_cols=37 Identities=24% Similarity=0.427 Sum_probs=24.6
Q ss_pred HHHHHH-HHHHcCCeEEEeeccccccccccccceeeee
Q 019830 246 IEEAIL-EAEEKGARVISLGLLNQGEELNRYGGLFVHK 282 (335)
Q Consensus 246 ie~ail-~a~~~g~kv~slg~lN~~~~ln~~g~l~v~~ 282 (335)
+|++|. .||+.|+|-.-.=.-|.+..+.+.-++|-||
T Consensus 54 ~~~~La~KAd~~GA~yY~Ii~a~~~n~~h~tA~IYkk~ 91 (91)
T PRK09929 54 AKEDLIKKADEKGADVLVLTSGQTDNKIHGTADIYKKK 91 (91)
T ss_pred HHHHHHHHHHHcCCCEEEEEecCCCCcEEEEEEeeecC
Confidence 566666 7999999843332235555677888888654
No 18
>TIGR02530 flg_new flagellar operon protein. Members of this family are found in a subset of bacterial flagellar operons, generally between genes designated flgD and flgE, in species as diverse as Bacillus halodurans and various other Firmicutes, Geobacter sulfurreducens, and Bdellovibrio bacteriovorus. The specific molecular function is unknown.
Probab=41.00 E-value=21 Score=29.73 Aligned_cols=23 Identities=48% Similarity=0.549 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHcCCeEEEeeccc
Q 019830 244 RLIEEAILEAEEKGARVISLGLLN 267 (335)
Q Consensus 244 ~~ie~ail~a~~~g~kv~slg~lN 267 (335)
+.||+|+.+|+++|+| =||=+++
T Consensus 38 ~~i~~av~~A~~KG~k-esLvl~~ 60 (96)
T TIGR02530 38 KKLLEAVEEAESKGVK-DSLILMN 60 (96)
T ss_pred HHHHHHHHHHHhcCCC-ceEEEeC
Confidence 4589999999999999 5665543
No 19
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=40.98 E-value=29 Score=26.00 Aligned_cols=22 Identities=27% Similarity=0.274 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHcCCeEEEee
Q 019830 243 NRLIEEAILEAEEKGARVISLG 264 (335)
Q Consensus 243 n~~ie~ail~a~~~g~kv~slg 264 (335)
++.+.+++.+|.++|+|++++-
T Consensus 60 t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 60 TEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred CHHHHHHHHHHHHcCCeEEEEe
Confidence 5678888899999999999986
No 20
>KOG4701 consensus Chitinase [Cell wall/membrane/envelope biogenesis]
Probab=39.59 E-value=28 Score=36.00 Aligned_cols=71 Identities=27% Similarity=0.313 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHcCCeE-EEeeccccccccc----------------cccceeeeecCCCceEeecCCc--------e---
Q 019830 245 LIEEAILEAEEKGARV-ISLGLLNQGEELN----------------RYGGLFVHKNPELKIKVVDGSS--------L--- 296 (335)
Q Consensus 245 ~ie~ail~a~~~g~kv-~slg~lN~~~~ln----------------~~g~l~v~~~p~l~vrvv~g~~--------l--- 296 (335)
+||+-|.+.+-.|.|| +|||--|-|..+| |+|+ .-+-.+.--||||=- -
T Consensus 91 qi~~di~~CQS~GiKVlLSLGG~~GnYs~~~d~dA~~fA~~LWn~Fg~G~---~S~RPfg~AVvDGfDF~IE~g~~~~ys 167 (568)
T KOG4701|consen 91 QIETDIQVCQSNGIKVLLSLGGYNGNYSLNNDDDATNFAFQLWNIFGSGE---DSYRPFGKAVVDGFDFEIEKGTNTAYS 167 (568)
T ss_pred hhhhHHHHHHhcCeEEEEeccCcccceeeccchhHHHHHHHHHHHhcCCc---cccCcccchhccceeeeeecCCcchHH
Confidence 7899999999999999 5999888887776 4555 444456666777732 1
Q ss_pred -ehhhhhccCCCCCcceeeeccc
Q 019830 297 -AVAVLTNSIPAEQPKWSLEAFS 318 (335)
Q Consensus 297 -~aavvl~~ip~~~~~~~l~~~~ 318 (335)
.|--.+...-.|.++..|+|+-
T Consensus 168 aLA~~L~~~Fa~~~r~yYLsaAP 190 (568)
T KOG4701|consen 168 ALAKRLLEIFASDPRRYYLSAAP 190 (568)
T ss_pred HHHHHHHHHHccCCceEEeccCC
Confidence 1222334456788888888873
No 21
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=38.14 E-value=33 Score=30.71 Aligned_cols=25 Identities=24% Similarity=0.233 Sum_probs=20.1
Q ss_pred hhHHHHHHHHHHHHHHcCCeEE-Eee
Q 019830 240 ESINRLIEEAILEAEEKGARVI-SLG 264 (335)
Q Consensus 240 ~~in~~ie~ail~a~~~g~kv~-slg 264 (335)
..-++.+|....+|||.|.||. +|+
T Consensus 61 ~~~~d~l~~~L~~A~~~Gmkv~~Gl~ 86 (166)
T PF14488_consen 61 MPPVDLLEMILDAADKYGMKVFVGLY 86 (166)
T ss_pred CCcccHHHHHHHHHHHcCCEEEEeCC
Confidence 3556789999999999999985 444
No 22
>PRK15062 hydrogenase isoenzymes formation protein HypD; Provisional
Probab=35.98 E-value=13 Score=37.77 Aligned_cols=69 Identities=22% Similarity=0.223 Sum_probs=56.4
Q ss_pred ceEEEecCCccccccCCchhH-----------HHHHHHHHHHHHHcCCeEEEeeccccccccccccceeeeecCCCceEe
Q 019830 222 QTWAKSKYNMQYFSQQPNESI-----------NRLIEEAILEAEEKGARVISLGLLNQGEELNRYGGLFVHKNPELKIKV 290 (335)
Q Consensus 222 q~w~~pr~~~~y~~~~~~~~i-----------n~~ie~ail~a~~~g~kv~slg~lN~~~~ln~~g~l~v~~~p~l~vrv 290 (335)
+||+|=|||+.-.||-.-|=| ...|++||.-|.+.||-+.++|=+-+-.-- .|.|.-.|--.-+||+
T Consensus 37 Ht~aI~r~Gir~lLP~~ielisGPGCPVCVtp~~~ID~ai~La~~~~vi~~TfGDmlRVPGs--~~SL~~ara~GadVri 114 (364)
T PRK15062 37 HTHAIFRYGLRSLLPENIELIHGPGCPVCVTPMGRIDAAIELASRPGVILCTFGDMLRVPGS--KGSLLEAKAEGADVRI 114 (364)
T ss_pred chHHHHHhChHhhCCCCcEEecCCCCCcEeCcHHHHHHHHHHhCCCCeEEEeccccccCCCC--cCCHHHHHhCCCCEEE
Confidence 899999999988888776544 689999999999999999999988775432 4567667777777888
Q ss_pred ec
Q 019830 291 VD 292 (335)
Q Consensus 291 v~ 292 (335)
|-
T Consensus 115 VY 116 (364)
T PRK15062 115 VY 116 (364)
T ss_pred Ee
Confidence 85
No 23
>TIGR00762 DegV EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity.
Probab=35.38 E-value=30 Score=32.90 Aligned_cols=56 Identities=20% Similarity=0.133 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHcCCeEEEeeccccccccccccceeeeecCCCceEeecCCceehh
Q 019830 244 RLIEEAILEAEEKGARVISLGLLNQGEELNRYGGLFVHKNPELKIKVVDGSSLAVA 299 (335)
Q Consensus 244 ~~ie~ail~a~~~g~kv~slg~lN~~~~ln~~g~l~v~~~p~l~vrvv~g~~l~aa 299 (335)
..+++++.+..+.|-+||++.+..+--.--.+-....+..++.+|+|+|-.+..++
T Consensus 65 ~~~~~~~~~l~~~~~~vi~i~iSs~lSgty~~a~~aa~~~~~~~i~ViDS~~~s~~ 120 (275)
T TIGR00762 65 GEFLELYEKLLEEGDEVLSIHLSSGLSGTYQSARQAAEMVDEAKVTVIDSKSASMG 120 (275)
T ss_pred HHHHHHHHHHHhCCCeEEEEEcCCchhHHHHHHHHHHhhCCCCCEEEECChHHHHH
Confidence 45677777777788899999888764433233344446667789999998877654
No 24
>TIGR01445 intein_Nterm intein N-terminal splicing region. This model is based on interated search results, starting with a curated collection of intein N-terminal splicing regions from InBase, the New England Biolabs Intein Database, as presented on its web site. It is designed to recognize inteins but not the related region of the sonic hedgehog protein.
Probab=35.29 E-value=47 Score=25.10 Aligned_cols=56 Identities=21% Similarity=0.336 Sum_probs=32.3
Q ss_pred hhHHHHHHHHHHHHHHcCCeEEEeeccccccccccccce-eeeecCC--CceEeecCCceeh
Q 019830 240 ESINRLIEEAILEAEEKGARVISLGLLNQGEELNRYGGL-FVHKNPE--LKIKVVDGSSLAV 298 (335)
Q Consensus 240 ~~in~~ie~ail~a~~~g~kv~slg~lN~~~~ln~~g~l-~v~~~p~--l~vrvv~g~~l~a 298 (335)
..|.++++++..+.+..|++|+|+ |+++..-..... +..+.++ .++|.=+|.++.+
T Consensus 15 ~~i~el~~~~~~~~~~~~~~v~s~---~~~~~~~~~~~~~~~~~~~~~~~~i~t~~g~~i~~ 73 (81)
T TIGR01445 15 VKIGELVEKEKDEKEPIKVKVLSL---DGGKIVKARPVVVWKRRAEGKLIRIKTENGREIKA 73 (81)
T ss_pred EEHHHHHHHHhccCCccceEEEee---cCCcEEEeeceEEEEecCCCcEEEEEeCCCCEEEE
Confidence 567777776654444458999998 444322222222 2233443 6777777877764
No 25
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=34.75 E-value=38 Score=29.77 Aligned_cols=27 Identities=22% Similarity=0.231 Sum_probs=23.4
Q ss_pred hhHHHHHHHHHHHHHHcCCeEEEeecc
Q 019830 240 ESINRLIEEAILEAEEKGARVISLGLL 266 (335)
Q Consensus 240 ~~in~~ie~ail~a~~~g~kv~slg~l 266 (335)
-|-|+.+.+|+..|.++|+||+++-.-
T Consensus 111 SG~t~~~i~~~~~ak~~Ga~vI~IT~~ 137 (177)
T cd05006 111 SGNSPNVLKALEAAKERGMKTIALTGR 137 (177)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 446889999999999999999999654
No 26
>PF07338 DUF1471: Protein of unknown function (DUF1471); InterPro: IPR010854 This entry consists of several hypothetical Enterobacterial proteins of around 90 residues in length. Some of the proteins are annotated as ydgH precursors and contain two copies of this region, one at the N terminus and the other at the C terminus. The function of this family is unknown.; PDB: 2NOC_A 2JNA_B 4EVU_B.
Probab=34.17 E-value=52 Score=24.37 Aligned_cols=15 Identities=53% Similarity=0.758 Sum_probs=10.0
Q ss_pred HHHHHH-HHHHcCCeE
Q 019830 246 IEEAIL-EAEEKGARV 260 (335)
Q Consensus 246 ie~ail-~a~~~g~kv 260 (335)
+|++|. .||++|++-
T Consensus 20 ~~~~la~kAd~~GA~~ 35 (56)
T PF07338_consen 20 AEEALAKKADEKGAKY 35 (56)
T ss_dssp HHHHHHHHHHHTT-SE
T ss_pred HHHHHHHHHHHcCCCE
Confidence 455555 899999873
No 27
>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=34.02 E-value=47 Score=28.98 Aligned_cols=60 Identities=27% Similarity=0.376 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHcCCeEEEe----------eccccccccc--cccceeeeecCCCce-----EeecCCceehhhh
Q 019830 242 INRLIEEAILEAEEKGARVISL----------GLLNQGEELN--RYGGLFVHKNPELKI-----KVVDGSSLAVAVL 301 (335)
Q Consensus 242 in~~ie~ail~a~~~g~kv~sl----------g~lN~~~~ln--~~g~l~v~~~p~l~v-----rvv~g~~l~aavv 301 (335)
-|+.+-+.|.+..++|..|.+. |+||..+.-. ...+.+-+++|+.++ =++||+-.||+-.
T Consensus 81 ~~~~l~~~l~~~~~~~~~i~aic~g~~~La~aGlL~~~~~t~~~~~~~~l~~~~~~~~~~~~~~~v~dg~i~Ta~g~ 157 (187)
T cd03137 81 PPPALLAALRRAAARGARVASVCTGAFVLAEAGLLDGRRATTHWAYAEDLARRFPAVRVDPDVLYVDDGNVWTSAGV 157 (187)
T ss_pred CCHHHHHHHHHHHhcCCEEEEECHHHHHHHHccCcCCCceeehHhhHHHHHHHCCCCEEecCCEEEecCCEEEcccH
Confidence 3566777777888889999887 6666443322 122334445565443 2678999988754
No 28
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=33.96 E-value=42 Score=27.23 Aligned_cols=29 Identities=21% Similarity=0.185 Sum_probs=23.7
Q ss_pred chhHHHHHHHHHHHHHHcCCeEEEeeccc
Q 019830 239 NESINRLIEEAILEAEEKGARVISLGLLN 267 (335)
Q Consensus 239 ~~~in~~ie~ail~a~~~g~kv~slg~lN 267 (335)
..|=++.+-+++.+|.++|+||+++-.-.
T Consensus 55 ~sG~t~e~~~~~~~a~~~g~~vi~iT~~~ 83 (126)
T cd05008 55 QSGETADTLAALRLAKEKGAKTVAITNVV 83 (126)
T ss_pred CCcCCHHHHHHHHHHHHcCCeEEEEECCC
Confidence 34557778899999999999999997653
No 29
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=33.26 E-value=19 Score=24.01 Aligned_cols=11 Identities=55% Similarity=1.060 Sum_probs=9.6
Q ss_pred HHcCCeEEEee
Q 019830 254 EEKGARVISLG 264 (335)
Q Consensus 254 ~~~g~kv~slg 264 (335)
+..|-||+|||
T Consensus 19 eD~GPKv~~lg 29 (30)
T PF07492_consen 19 EDTGPKVLSLG 29 (30)
T ss_pred ecCCCeEEecc
Confidence 56899999998
No 30
>cd03400 Band_7_1 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=32.17 E-value=33 Score=28.34 Aligned_cols=41 Identities=15% Similarity=0.242 Sum_probs=31.5
Q ss_pred EEecCCccccccCCchhHHHHHHHHHH-HHHHcCCeEEEeec
Q 019830 225 AKSKYNMQYFSQQPNESINRLIEEAIL-EAEEKGARVISLGL 265 (335)
Q Consensus 225 ~~pr~~~~y~~~~~~~~in~~ie~ail-~a~~~g~kv~slg~ 265 (335)
++.+|...=++...++.|++.|++.+. ++++.|++|.+...
T Consensus 66 ~~~~~~~~e~i~~~R~~i~~~i~~~l~~~~~~~Gi~v~~v~i 107 (124)
T cd03400 66 VTGRYTAEQIYSTKRKEIESAIKKELIEEFVGDGLILEEVLL 107 (124)
T ss_pred HhcCCCHHHHhhhhHHHHHHHHHHHHHHHhccCCeEEEEEEE
Confidence 455666644444468999999999988 58889999999855
No 31
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=31.73 E-value=1.1e+02 Score=23.57 Aligned_cols=46 Identities=11% Similarity=0.160 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHcCCeEEEeeccccccccccccceeeeecC-CCceEeecCC
Q 019830 244 RLIEEAILEAEEKGARVISLGLLNQGEELNRYGGLFVHKNP-ELKIKVVDGS 294 (335)
Q Consensus 244 ~~ie~ail~a~~~g~kv~slg~lN~~~~ln~~g~l~v~~~p-~l~vrvv~g~ 294 (335)
..++++..++.++|+++.. .....-++|.-+.-++| +.++.+..|+
T Consensus 66 ~d~~~~~~~l~~~G~~~~~-----~~~~~~~~~~~~~~~DPdG~~iEi~~~~ 112 (113)
T cd08345 66 EEFDEYTERLKALGVEMKP-----ERPRVQGEGRSIYFYDPDGHLLELHAGT 112 (113)
T ss_pred HHHHHHHHHHHHcCCccCC-----CccccCCCceEEEEECCCCCEEEEEeCc
Confidence 5688888899999999852 11222245666667788 5666666553
No 32
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=31.53 E-value=53 Score=25.59 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHcCCeEEEe
Q 019830 242 INRLIEEAILEAEEKGARVISL 263 (335)
Q Consensus 242 in~~ie~ail~a~~~g~kv~sl 263 (335)
-.+++++|+..|++.|.||...
T Consensus 40 a~~L~~~~l~~a~~~~~kv~p~ 61 (78)
T PF14542_consen 40 AKKLVEAALDYARENGLKVVPT 61 (78)
T ss_dssp HHHHHHHHHHHHHHTT-EEEET
T ss_pred HHHHHHHHHHHHHHCCCEEEEE
Confidence 4678888889999999999864
No 33
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=31.14 E-value=48 Score=32.26 Aligned_cols=49 Identities=22% Similarity=0.431 Sum_probs=37.7
Q ss_pred cCCchhHHHHHHHHHHHHHHcCCeEEEeeccccccccccccceeeeecCCCceEeecC
Q 019830 236 QQPNESINRLIEEAILEAEEKGARVISLGLLNQGEELNRYGGLFVHKNPELKIKVVDG 293 (335)
Q Consensus 236 ~~~~~~in~~ie~ail~a~~~g~kv~slg~lN~~~~ln~~g~l~v~~~p~l~vrvv~g 293 (335)
|.-.+.=++++||||.-|.+.|++.|-|+ |+-.-|=++.+.-+-|-..|
T Consensus 88 ~~~r~~aleiM~KaI~LA~dLGIRtIQLA---------GYDVYYE~~d~eT~~rFi~g 136 (287)
T COG3623 88 EATRQQALEIMEKAIQLAQDLGIRTIQLA---------GYDVYYEEADEETRQRFIEG 136 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCceeEeec---------cceeeeccCCHHHHHHHHHH
Confidence 33345568899999999999999999766 66666667777777666666
No 34
>PHA03003 palmytilated EEV membrane glycoprotein; Provisional
Probab=31.02 E-value=52 Score=32.94 Aligned_cols=57 Identities=23% Similarity=0.243 Sum_probs=34.5
Q ss_pred chhHHHHHHHHHHHHHHcCCeEEE-e-ecccc--ccccccccceeeeec-CC--------CceEeecCCc
Q 019830 239 NESINRLIEEAILEAEEKGARVIS-L-GLLNQ--GEELNRYGGLFVHKN-PE--------LKIKVVDGSS 295 (335)
Q Consensus 239 ~~~in~~ie~ail~a~~~g~kv~s-l-g~lN~--~~~ln~~g~l~v~~~-p~--------l~vrvv~g~~ 295 (335)
.+.+-+.|-+|+.+|-+.||||== + |..++ .++|...|--+..-+ |. .|.-||||.+
T Consensus 58 ~d~~g~~i~~aL~~aa~rGV~Vril~D~~~~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~~k~~IiDg~~ 127 (369)
T PHA03003 58 STPEGRLILDKLKEAAESGVKVTILVDEQSGDKDEEELQSSNINYIKVDIGKLNNVGVLLGSFWVSDDRR 127 (369)
T ss_pred CCchHHHHHHHHHHhccCCCeEEEEecCCCCCccHHHHHHcCCEEEEEeccccCCCCceeeeEEEEcCcE
Confidence 577888899999998899999832 2 22222 344655553222111 11 2456899876
No 35
>PRK13912 nuclease NucT; Provisional
Probab=30.87 E-value=63 Score=28.75 Aligned_cols=49 Identities=18% Similarity=0.278 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHcCCeEEEeecccccccccccc--ceeeeecCCCceEeecCC
Q 019830 244 RLIEEAILEAEEKGARVISLGLLNQGEELNRYG--GLFVHKNPELKIKVVDGS 294 (335)
Q Consensus 244 ~~ie~ail~a~~~g~kv~slg~lN~~~~ln~~g--~l~v~~~p~l~vrvv~g~ 294 (335)
+-|-+|+.+|-++||+|==+---.++ .+... .-|..++|+.+++..+|.
T Consensus 59 ~~i~~aL~~Aa~RGV~VrIlld~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~ 109 (177)
T PRK13912 59 KDIAKALKSAAKRGVKISIIYDYESN--HNNDQSTIGYLDKYPNIKVCLLKGL 109 (177)
T ss_pred HHHHHHHHHHHHCCCEEEEEEeCccc--cCcchhHHHHHHhCCCceEEEecCc
Confidence 46888888999999998655321111 11111 124556677777666654
No 36
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=30.41 E-value=79 Score=30.00 Aligned_cols=58 Identities=14% Similarity=0.272 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCC---------------------eEEEeeccccc---------------cccccccceeeeecCCCc
Q 019830 244 RLIEEAILEAEEKGA---------------------RVISLGLLNQG---------------EELNRYGGLFVHKNPELK 287 (335)
Q Consensus 244 ~~ie~ail~a~~~g~---------------------kv~slg~lN~~---------------~~ln~~g~l~v~~~p~l~ 287 (335)
+.+++|+.+|.++|+ .||+-|++|++ ..+-.-|+-.+...|+-.
T Consensus 125 ~~l~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~~~~~~~s~~g~~~~~~~l~ApG~~i~~~~~~~~ 204 (267)
T cd07476 125 PILANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDDDGLPLKFSNWGADYRKKGILAPGENILGAALGGE 204 (267)
T ss_pred HHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecCCCCeeeecCCCCCCCCceEEecCCCceeecCCCC
Q ss_pred eEeecCCceehhhh
Q 019830 288 IKVVDGSSLAVAVL 301 (335)
Q Consensus 288 vrvv~g~~l~aavv 301 (335)
.....|+|++|+.|
T Consensus 205 ~~~~sGTS~AaP~v 218 (267)
T cd07476 205 VVRRSGTSFAAAIV 218 (267)
T ss_pred eEEeccHHHHHHHH
No 37
>PRK09850 pseudouridine kinase; Provisional
Probab=30.36 E-value=49 Score=31.44 Aligned_cols=55 Identities=16% Similarity=0.245 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHcCCe--EEEeecccccc-ccccccceeeeecCCCceEeec----CCceehhhhh
Q 019830 244 RLIEEAILEAEEKGAR--VISLGLLNQGE-ELNRYGGLFVHKNPELKIKVVD----GSSLAVAVLT 302 (335)
Q Consensus 244 ~~ie~ail~a~~~g~k--v~slg~lN~~~-~ln~~g~l~v~~~p~l~vrvv~----g~~l~aavvl 302 (335)
..+|++...-.+.|+| |+++|. ++- -.+++|+. ...|..++++|| |++.+|+.+.
T Consensus 203 ~~~~~~~~~l~~~g~~~vvvT~G~--~G~~~~~~~~~~--~~~~~~~~~vvDttGAGDaF~agfi~ 264 (313)
T PRK09850 203 EDVAKVAAWFHQHGLNRLVLSMGG--DGVYYSDISGES--GWSAPIKTNVINVTGAGDAMMAGLAS 264 (313)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeCC--ceEEEEcCCCCe--EecCCCCcccccCCCcHHHHHHHHHH
Confidence 3466776666678876 677774 221 12233321 124666789999 8888777654
No 38
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=30.20 E-value=29 Score=28.43 Aligned_cols=25 Identities=24% Similarity=0.405 Sum_probs=22.6
Q ss_pred cCCchhHHHHHHHHHHHHHHcCCeE
Q 019830 236 QQPNESINRLIEEAILEAEEKGARV 260 (335)
Q Consensus 236 ~~~~~~in~~ie~ail~a~~~g~kv 260 (335)
|.+.+..-++|+||=.|=.++|+||
T Consensus 67 peA~~eL~~eI~eAK~dLr~kGv~~ 91 (91)
T PF08285_consen 67 PEAAKELQKEIKEAKADLRKKGVDV 91 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 5678889999999999999999986
No 39
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=29.80 E-value=54 Score=26.90 Aligned_cols=27 Identities=19% Similarity=0.300 Sum_probs=22.0
Q ss_pred chhHHHHHHHHHHHHHHcCCeEEEeec
Q 019830 239 NESINRLIEEAILEAEEKGARVISLGL 265 (335)
Q Consensus 239 ~~~in~~ie~ail~a~~~g~kv~slg~ 265 (335)
+.|=++.+-+++..|.++|+|++++-.
T Consensus 52 ~SG~t~e~i~~~~~a~~~g~~iI~IT~ 78 (119)
T cd05017 52 YSGNTEETLSAVEQAKERGAKIVAITS 78 (119)
T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 445567788888899999999999874
No 40
>cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration. Integrins consist of an alpha and a beta sub-unit. Each sub-unit has a large extracellular portion, a single transmembrane segment and a short cytoplasmic domain. The N-terminal domains of the alpha and beta subunits associate to form the integrin headpiece, which contains the ligand binding site, whereas the C-terminal segments traverse the plasma membrane and mediate interaction with the cytoskeleton and with signalling proteins.The VWA domains present in the alpha subunits of integrins seem to be a chordate specific radiation of the gene family being found only in vertebrates. They mediate protein-protein interactions.
Probab=29.71 E-value=41 Score=29.53 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=19.1
Q ss_pred HHHHHHHHHcCCeEEEeecccc
Q 019830 247 EEAILEAEEKGARVISLGLLNQ 268 (335)
Q Consensus 247 e~ail~a~~~g~kv~slg~lN~ 268 (335)
++|+.+|++.||+|.+.|.-+.
T Consensus 122 ~~~~~~~k~~gv~v~~Vgvg~~ 143 (177)
T cd01469 122 KDVIPQAEREGIIRYAIGVGGH 143 (177)
T ss_pred HHHHHHHHHCCcEEEEEEeccc
Confidence 6788889999999999999765
No 41
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=29.32 E-value=67 Score=26.49 Aligned_cols=29 Identities=31% Similarity=0.172 Sum_probs=23.5
Q ss_pred CchhHHHHHHHHHHHHHHcCCeEEEeecc
Q 019830 238 PNESINRLIEEAILEAEEKGARVISLGLL 266 (335)
Q Consensus 238 ~~~~in~~ie~ail~a~~~g~kv~slg~l 266 (335)
-..|=++.+-+|+..|+++|+||+++-.-
T Consensus 55 S~SG~t~~~~~~~~~a~~~g~~vi~iT~~ 83 (120)
T cd05710 55 SHSGNTKETVAAAKFAKEKGATVIGLTDD 83 (120)
T ss_pred eCCCCChHHHHHHHHHHHcCCeEEEEECC
Confidence 34455788889999999999999998763
No 42
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=29.29 E-value=54 Score=28.81 Aligned_cols=28 Identities=18% Similarity=0.189 Sum_probs=23.0
Q ss_pred chhHHHHHHHHHHHHHHcCCeEEEeecc
Q 019830 239 NESINRLIEEAILEAEEKGARVISLGLL 266 (335)
Q Consensus 239 ~~~in~~ie~ail~a~~~g~kv~slg~l 266 (335)
..|=++.+.+++..|.++|+||+++-.-
T Consensus 84 ~sG~t~~~i~~~~~ak~~g~~iI~IT~~ 111 (179)
T cd05005 84 GSGETSSVVNAAEKAKKAGAKVVLITSN 111 (179)
T ss_pred CCCCcHHHHHHHHHHHHCCCeEEEEECC
Confidence 3345788889999999999999998753
No 43
>PF15250 Raftlin: Raftlin
Probab=28.36 E-value=58 Score=34.12 Aligned_cols=27 Identities=30% Similarity=0.492 Sum_probs=24.5
Q ss_pred CCchhHHHHHHHHHHHHHHcCCeEEEee
Q 019830 237 QPNESINRLIEEAILEAEEKGARVISLG 264 (335)
Q Consensus 237 ~~~~~in~~ie~ail~a~~~g~kv~slg 264 (335)
...|.|..+||| |-||-+.|+|.+++=
T Consensus 135 ~t~e~i~~lIkK-IqdAA~qG~kFVGfv 161 (457)
T PF15250_consen 135 LTNEIIKELIKK-IQDAASQGMKFVGFV 161 (457)
T ss_pred CChHHHHHHHHH-HHHHHhccCeEEEEe
Confidence 467999999999 999999999999875
No 44
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=28.25 E-value=52 Score=32.41 Aligned_cols=54 Identities=26% Similarity=0.461 Sum_probs=35.0
Q ss_pred CCchhHHHHHHHH-------------------HHHHH-HcCCeEEEeeccccc-----------cccccccceeeeecCC
Q 019830 237 QPNESINRLIEEA-------------------ILEAE-EKGARVISLGLLNQG-----------EELNRYGGLFVHKNPE 285 (335)
Q Consensus 237 ~~~~~in~~ie~a-------------------il~a~-~~g~kv~slg~lN~~-----------~~ln~~g~l~v~~~p~ 285 (335)
.-||-|=++|.+| ++||- |+||-|-=| |++. -.+|. ...+|
T Consensus 134 ~IKE~vR~~I~~A~kVIAIVMD~FTD~dIf~DLleAa~kR~VpVYiL--LD~~~~~~Fl~Mc~~~~v~~------~~~~n 205 (284)
T PF07894_consen 134 HIKEVVRRMIQQAQKVIAIVMDVFTDVDIFCDLLEAANKRGVPVYIL--LDEQNLPHFLEMCEKLGVNL------QHLKN 205 (284)
T ss_pred CHHHHHHHHHHHhcceeEEEeeccccHHHHHHHHHHHHhcCCcEEEE--echhcChHHHHHHHHCCCCh------hhcCC
Confidence 3456667777666 45555 899988543 3332 22222 34589
Q ss_pred CceEeecCCceeh
Q 019830 286 LKIKVVDGSSLAV 298 (335)
Q Consensus 286 l~vrvv~g~~l~a 298 (335)
+|||.|.|.|--+
T Consensus 206 mrVRsv~G~~y~~ 218 (284)
T PF07894_consen 206 MRVRSVTGCTYYS 218 (284)
T ss_pred eEEEEecCCeeec
Confidence 9999999998754
No 45
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=28.15 E-value=52 Score=28.79 Aligned_cols=33 Identities=15% Similarity=0.072 Sum_probs=26.0
Q ss_pred ccCCchhHHHHHHHHHHHHHHcCCeEEEeeccc
Q 019830 235 SQQPNESINRLIEEAILEAEEKGARVISLGLLN 267 (335)
Q Consensus 235 ~~~~~~~in~~ie~ail~a~~~g~kv~slg~lN 267 (335)
+-.-.-|-++.+.+++..|.++|+||+++-.-.
T Consensus 77 I~iS~sG~t~~~i~~~~~ak~~g~~ii~IT~~~ 109 (179)
T TIGR03127 77 IAISGSGETESLVTVAKKAKEIGATVAAITTNP 109 (179)
T ss_pred EEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCC
Confidence 333445678999999999999999999986543
No 46
>cd08629 PI-PLCc_delta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta1 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This subfamily corresponds to the catalytic domain
Probab=28.14 E-value=60 Score=31.53 Aligned_cols=50 Identities=20% Similarity=0.274 Sum_probs=36.5
Q ss_pred HHHHHHHHHcCCeEEEeeccccccccccccceeeeecCCCceEeecCCceehhhhhccCCCCCcc
Q 019830 247 EEAILEAEEKGARVISLGLLNQGEELNRYGGLFVHKNPELKIKVVDGSSLAVAVLTNSIPAEQPK 311 (335)
Q Consensus 247 e~ail~a~~~g~kv~slg~lN~~~~ln~~g~l~v~~~p~l~vrvv~g~~l~aavvl~~ip~~~~~ 311 (335)
.+|+.+|=++|+|++=|-.=+- |+-...|-||.|||..|-+.++=+..||
T Consensus 32 ~e~y~~aL~~GcRcvElD~wdg---------------~~~eP~V~HG~tlts~i~f~~v~~~I~~ 81 (258)
T cd08629 32 TEAYIRALCKGCRCLELDCWDG---------------PNQEPIIYHGYTFTSKILFCDVLRAIRD 81 (258)
T ss_pred HHHHHHHHHhCCcEEEEEeecC---------------CCCCcEEeeCCCCccCcCHHHHHHHHHH
Confidence 4788999999999998876541 2235678999999998766655443333
No 47
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=27.89 E-value=53 Score=27.35 Aligned_cols=41 Identities=24% Similarity=0.332 Sum_probs=27.0
Q ss_pred ceEEEecCCccccccCCchhHH-HHHHHHHHHHHHcCCeEEEee
Q 019830 222 QTWAKSKYNMQYFSQQPNESIN-RLIEEAILEAEEKGARVISLG 264 (335)
Q Consensus 222 q~w~~pr~~~~y~~~~~~~~in-~~ie~ail~a~~~g~kv~slg 264 (335)
++-.|+.....= ..+.+||- +|+++|+.+|++.|-||+-+-
T Consensus 38 ~~i~i~HT~V~d--~lrGqGia~~L~~~al~~ar~~g~kiiP~C 79 (99)
T COG2388 38 NLIIIDHTYVPD--ELRGQGIAQKLVEKALEEAREAGLKIIPLC 79 (99)
T ss_pred CEEEEecCcCCH--HHcCCcHHHHHHHHHHHHHHHcCCeEcccc
Confidence 445555554311 12455564 678889999999999998764
No 48
>cd08595 PI-PLCc_zeta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-zeta. This family corresponds to the catalytic domain presenting in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-zeta isozyme. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-zeta represents a class of sperm-specific PI-PLC that has an N-terminal EF-hand domain, a PLC catalytic core domain, and a C-terminal C2 domain. The PLC catalytic core domain is a TIM barrel with two highly conserved regions (X and Y)
Probab=27.76 E-value=58 Score=31.62 Aligned_cols=50 Identities=20% Similarity=0.310 Sum_probs=36.1
Q ss_pred HHHHHHHHHcCCeEEEeeccccccccccccceeeeecCCCceEeecCCceehhhhhccCCCCCcc
Q 019830 247 EEAILEAEEKGARVISLGLLNQGEELNRYGGLFVHKNPELKIKVVDGSSLAVAVLTNSIPAEQPK 311 (335)
Q Consensus 247 e~ail~a~~~g~kv~slg~lN~~~~ln~~g~l~v~~~p~l~vrvv~g~~l~aavvl~~ip~~~~~ 311 (335)
.+|+.+|=++|+|++=|-.=+ + |+-...|-||.|||..|-+.++=+..||
T Consensus 32 ~e~y~~aL~~GcRcvElD~wd-g--------------~~~ep~v~HG~tlt~~i~f~~v~~~I~~ 81 (257)
T cd08595 32 LDGYVSALRKGCRCLEIDCWD-G--------------ADNEPVVYHGYTLTSKILFKEVITTVEK 81 (257)
T ss_pred HHHHHHHHHhCCcEEEEEeec-C--------------CCCCcEEecCCCcccccCHHHHHHHHHH
Confidence 367889999999999887755 1 1235778999999998766554444343
No 49
>cd08630 PI-PLCc_delta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta3 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This family corresponds to the catalytic domain wh
Probab=27.72 E-value=59 Score=31.56 Aligned_cols=50 Identities=20% Similarity=0.277 Sum_probs=36.8
Q ss_pred HHHHHHHHHcCCeEEEeeccccccccccccceeeeecCCCceEeecCCceehhhhhccCCCCCcc
Q 019830 247 EEAILEAEEKGARVISLGLLNQGEELNRYGGLFVHKNPELKIKVVDGSSLAVAVLTNSIPAEQPK 311 (335)
Q Consensus 247 e~ail~a~~~g~kv~slg~lN~~~~ln~~g~l~v~~~p~l~vrvv~g~~l~aavvl~~ip~~~~~ 311 (335)
.+|+.+|=++|+|++=|-.=+ + . +-...|-||.|||..|-+.++=+..||
T Consensus 32 ~~~y~~aL~~GcRcvElD~wd-g----~----------~~eP~V~HG~tlts~i~f~~v~~~I~~ 81 (258)
T cd08630 32 TEAYVRAFAQGCRCVELDCWE-G----P----------GGEPVIYHGHTLTSKILFRDVIQAVRQ 81 (258)
T ss_pred HHHHHHHHHcCCcEEEEEeec-C----C----------CCCcEEeeCCccccceEHHHHHHHHHH
Confidence 478999999999999887755 1 1 224678999999998876665444444
No 50
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=27.52 E-value=30 Score=34.43 Aligned_cols=68 Identities=24% Similarity=0.217 Sum_probs=43.4
Q ss_pred CCchhHHHHHHHHHHHHHHcCCeEEEeeccccccccccccceee-eecCCC-ceEeecCCceehhhhhccCCC
Q 019830 237 QPNESINRLIEEAILEAEEKGARVISLGLLNQGEELNRYGGLFV-HKNPEL-KIKVVDGSSLAVAVLTNSIPA 307 (335)
Q Consensus 237 ~~~~~in~~ie~ail~a~~~g~kv~slg~lN~~~~ln~~g~l~v-~~~p~l-~vrvv~g~~l~aavvl~~ip~ 307 (335)
++-+.+-+-+-+|..-|+|.|+.|.+||.------ |. +..+ -+.|.+ -.|+-.|||.||=++...+=+
T Consensus 87 s~pkaatrrvl~a~~~a~~~Ga~V~gLGgFssIVg-n~--~~n~q~~~~e~t~~~~ttgns~Tayaa~r~Vl~ 156 (351)
T COG5322 87 SRPKAATRRVLNAMALAQKLGADVTGLGGFSSIVG-NL--GQNVQVRNVELTFTRFTTGNSHTAYAACRQVLK 156 (351)
T ss_pred hCHHHHHHHHHHHHHHHHHcCCeEEeecchhhhhc-cc--cccccccceEEEEEecccCCccchHHHHHHHHH
Confidence 44666777777888889999999999986422000 00 0011 233433 357788999999887665544
No 51
>cd03399 Band_7_flotillin Band_7_flotillin: a subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. These two proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and, interact with a variety of proteins. Flotillins may play a role in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis.
Probab=27.23 E-value=77 Score=26.29 Aligned_cols=33 Identities=9% Similarity=0.244 Sum_probs=28.0
Q ss_pred CchhHHHHHHHHHH-HHHHcCCeEEEeecccccc
Q 019830 238 PNESINRLIEEAIL-EAEEKGARVISLGLLNQGE 270 (335)
Q Consensus 238 ~~~~in~~ie~ail-~a~~~g~kv~slg~lN~~~ 270 (335)
+++.|++.|++.+. ++++.|++|.+....+-..
T Consensus 83 ~R~~i~~~i~~~v~~~~~~~Gi~i~~v~I~~i~~ 116 (128)
T cd03399 83 DRDKFAEQVQEVVAPDLNKMGLELDSFTIKDITD 116 (128)
T ss_pred hHHHHHHHHHHHHHHHHHHCCCEEEEEeeEEecC
Confidence 58999999999998 7899999999998765443
No 52
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=26.94 E-value=52 Score=29.05 Aligned_cols=46 Identities=26% Similarity=0.274 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHcCCeEEEeecccc-cccc----c-cccceeeeecCCCceE
Q 019830 244 RLIEEAILEAEEKGARVISLGLLNQ-GEEL----N-RYGGLFVHKNPELKIK 289 (335)
Q Consensus 244 ~~ie~ail~a~~~g~kv~slg~lN~-~~~l----n-~~g~l~v~~~p~l~vr 289 (335)
+.+++|+.++.++||+|.++|.=+- .++| | ++|..|+..+++|+=+
T Consensus 127 ~~~~~~~~~~~~~gi~i~~vgig~~~~~~L~~IA~~~~~~~~~~~~~~l~~~ 178 (186)
T cd01480 127 GGIEKAVNEADHLGIKIFFVAVGSQNEEPLSRIACDGKSALYRENFAELLWS 178 (186)
T ss_pred hhHHHHHHHHHHCCCEEEEEecCccchHHHHHHHcCCcchhhhcchhhhccc
Confidence 4678899999999999998887532 2223 2 4445777777766544
No 53
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=26.41 E-value=30 Score=34.56 Aligned_cols=92 Identities=24% Similarity=0.291 Sum_probs=51.2
Q ss_pred cccc--cCCchhHHHHHHHHHHHH--HHcC-CeEEEeecc--ccccccccccceeeeecCCCceEeecCCceehhhhhcc
Q 019830 232 QYFS--QQPNESINRLIEEAILEA--EEKG-ARVISLGLL--NQGEELNRYGGLFVHKNPELKIKVVDGSSLAVAVLTNS 304 (335)
Q Consensus 232 ~y~~--~~~~~~in~~ie~ail~a--~~~g-~kv~slg~l--N~~~~ln~~g~l~v~~~p~l~vrvv~g~~l~aavvl~~ 304 (335)
||+. +-..++|+.+|+||-.+| |++| +|=++||+. ||.+.--+==+-|-+|+|.+- .=++=+|=|+++..-.
T Consensus 37 h~~ig~~~~~~rie~~i~~A~~k~g~d~~~~lr~lgL~lSg~d~e~~~~~lv~~~R~~fps~a-e~~~v~sDa~~sl~a~ 115 (336)
T KOG1794|consen 37 HWLIGSTTCASRIEDMIREAKEKAGWDKKGPLRSLGLGLSGTDQEDKNRKLVTEFRDKFPSVA-ENFYVTSDADGSLAAA 115 (336)
T ss_pred cccCCchHHHHHHHHHHHHHHhhcCCCccCccceeeeecccCCchhHHHHHHHHHHHhccchh-heeeeehhHHHHHhhc
Confidence 4555 444566777777776654 6778 777777664 443321112234558999875 2233344455555555
Q ss_pred CCCCCcc-eee--eccccccccc
Q 019830 305 IPAEQPK-WSL--EAFSLRLLMP 324 (335)
Q Consensus 305 ip~~~~~-~~l--~~~~~~~~~~ 324 (335)
-|++..- |+. ||.+-||..|
T Consensus 116 t~g~~~GiVLiaGTgs~crl~~~ 138 (336)
T KOG1794|consen 116 TPGGEGGIVLIAGTGSNCRLVNP 138 (336)
T ss_pred CCCCCCcEEEEecCCceeEEECC
Confidence 6655544 444 3456666544
No 54
>KOG0539 consensus Sphingolipid fatty acid hydroxylase [Lipid transport and metabolism]
Probab=26.40 E-value=42 Score=31.97 Aligned_cols=132 Identities=19% Similarity=0.128 Sum_probs=60.9
Q ss_pred HHHHHHHHhcchhhHHHHHhhhc-Chhh----ccc----c---CCCCCCCCCCceecccCCchHHHHHHHHhhHHHHHHH
Q 019830 16 VILMALLHAGPVEFVYYWLHRAL-HHHY----LYS----R---SHHHSSIVPEPITSVTRPFAEHITYFVLFATPLITTA 83 (335)
Q Consensus 16 ~il~~LLh~~~~Df~fYW~HRal-H~~~----Lwr----~---svHHSs~~p~p~Ta~r~HplE~ll~~~l~~iPLl~~~ 83 (335)
+++..+.. -+..|-.||.+ |... -|. + ..||.... --.-..++|+-..+....+..++-...
T Consensus 87 f~~Gvf~W----Tl~EY~lHRflFH~k~~~~s~~~~t~Hfl~HGcHHk~P~--D~~RLVfPP~~~~il~~pfy~~~~~vl 160 (240)
T KOG0539|consen 87 FVIGVFTW----TLIEYTLHRFLFHIKPNPDSYWLITLHFLIHGCHHKLPM--DGYRLVFPPTPFAILAAPFYLILSLVL 160 (240)
T ss_pred HHHHHHHH----HHHHHHHHheEEEecCCCCchHHHHHHHHHhcccccCCC--CCceEecCCchHHHHHHHHHHHHHHhc
Confidence 44455555 78899999965 4341 121 1 66785432 122234566655554443332221100
Q ss_pred ---hccccchhHHHHHHHHHHHHhhhccccceeccCccccccCCceEeeCCCcccCCCCCCCCCCCCCCcceeEEeecCC
Q 019830 84 ---LTGAGSIVPAFGYITYIDLMNNMGHCNFGLIPKWLFTIFPPLKYLMYTPSPLTASYAAPGELLDDSLDVVYLTHLTT 160 (335)
Q Consensus 84 ---l~g~~Si~~v~~y~l~~~~~~~~gHsN~el~P~~l~~~lp~Lkyli~TPs~H~tN~~~~~~~~~~~~D~Vflth~~~ 160 (335)
.....-...+.+|+.|....=.+-|.+- |+... +--+|. |.=.||=.||+.-..-....||.||+|-...
T Consensus 161 ~~~~~~a~faG~l~GYV~YDmtHYyLHhg~p---~~~~~--~~~lK~--yHl~HHfk~q~~GfGItS~lWD~VFgTl~~~ 233 (240)
T KOG0539|consen 161 PHPVAPAGFAGGLLGYVCYDMTHYYLHHGSP---PKRPY--LKHLKK--YHLNHHFKHQDLGFGITSSLWDYVFGTLGPL 233 (240)
T ss_pred CcchhhhhhccchhhhhhhhhhhhhhhcCCC---CCchH--HHHHHH--HHhhhhhhccccCccccHHHHHHHhccCCCC
Confidence 0000011245677766655555555531 12100 011222 2222332555433221234899999997654
No 55
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=26.10 E-value=93 Score=24.95 Aligned_cols=38 Identities=24% Similarity=0.247 Sum_probs=28.0
Q ss_pred chhHHHHHHHHHHHHHHcCCeEEEeeccccccccccccc
Q 019830 239 NESINRLIEEAILEAEEKGARVISLGLLNQGEELNRYGG 277 (335)
Q Consensus 239 ~~~in~~ie~ail~a~~~g~kv~slg~lN~~~~ln~~g~ 277 (335)
..+-+..+.+++..|+++|+|++++.. |++..+.+...
T Consensus 69 ~~g~~~~~~~~~~~a~~~g~~iv~iT~-~~~~~l~~~~d 106 (139)
T cd05013 69 FSGETKETVEAAEIAKERGAKVIAITD-SANSPLAKLAD 106 (139)
T ss_pred CCCCCHHHHHHHHHHHHcCCeEEEEcC-CCCChhHHhcC
Confidence 334467788888999999999999987 55555554433
No 56
>cd08599 PI-PLCc_plant Catalytic domain of plant phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11) encoded by PLC genes from higher plants, which are homologs of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The domain arrangement of plant PI-PLCs is structurally similar to the mammalian PLC-zeta isoform, whi
Probab=25.67 E-value=79 Score=30.13 Aligned_cols=50 Identities=28% Similarity=0.301 Sum_probs=34.8
Q ss_pred HHHHHHHHHcCCeEEEeeccccccccccccceeeeecCCCceEeecCCceehhhhhccCCCCCcc
Q 019830 247 EEAILEAEEKGARVISLGLLNQGEELNRYGGLFVHKNPELKIKVVDGSSLAVAVLTNSIPAEQPK 311 (335)
Q Consensus 247 e~ail~a~~~g~kv~slg~lN~~~~ln~~g~l~v~~~p~l~vrvv~g~~l~aavvl~~ip~~~~~ 311 (335)
.+++.+|=++|+|+|=|-.=+ .++-.-+|-||.|+|..+-+.++=+..||
T Consensus 32 ~~~y~~aL~~GcRcvElD~Wd---------------g~~~ep~V~HG~t~ts~i~f~dvl~~I~~ 81 (228)
T cd08599 32 TAPIIEALLRGCRVIELDLWP---------------GGRGDICVLHGGTLTKPVKFEDCIKAIKE 81 (228)
T ss_pred HHHHHHHHHhCCCEEEEEeec---------------CCCCCeEEEeCCCCcCCcCHHHHHHHHHH
Confidence 356888999999999887632 13346778899999997765554333333
No 57
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=25.60 E-value=62 Score=28.03 Aligned_cols=27 Identities=26% Similarity=0.343 Sum_probs=23.6
Q ss_pred chhHHHHHHHHHHHHHHcCCeEEEeec
Q 019830 239 NESINRLIEEAILEAEEKGARVISLGL 265 (335)
Q Consensus 239 ~~~in~~ie~ail~a~~~g~kv~slg~ 265 (335)
..|-|+.+.+++..|.++|+|++++..
T Consensus 88 ~sG~t~~~~~~~~~a~~~g~~ii~iT~ 114 (154)
T TIGR00441 88 TSGNSKNVLKAIEAAKDKGMKTITLAG 114 (154)
T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 345689999999999999999999976
No 58
>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=25.56 E-value=77 Score=27.87 Aligned_cols=60 Identities=20% Similarity=0.253 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHcCCeEEEe----------eccccccccc--cccceeeeecCCCc----eE-eecCCceehhhh
Q 019830 242 INRLIEEAILEAEEKGARVISL----------GLLNQGEELN--RYGGLFVHKNPELK----IK-VVDGSSLAVAVL 301 (335)
Q Consensus 242 in~~ie~ail~a~~~g~kv~sl----------g~lN~~~~ln--~~g~l~v~~~p~l~----vr-vv~g~~l~aavv 301 (335)
-|..+.+.|.+..+.|..|.++ |+||+.+.-- ...+.+-+++|+.+ .+ |+||+..|++-.
T Consensus 89 ~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~g~~~t~~~~~~~~~~~~~p~~~~~~~~~~v~dg~~~T~~g~ 165 (195)
T cd03138 89 DNPALIAWLRRQHANGATVAAACTGVFLLAEAGLLDGRRATTHWWLAPQFRRRFPKVRLDPDRVVVTDGNLITAGGA 165 (195)
T ss_pred ccHHHHHHHHHHHHcCCEEEEecHHHHHHHHccCcCCCeeeehHhhHHHHHHHCCCceeccCcEEEeCCCEEEcccH
Confidence 3566777788888999999987 6666543211 12233445556543 23 457998888754
No 59
>COG2313 IndA Uncharacterized enzyme involved in pigment biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=25.34 E-value=55 Score=32.14 Aligned_cols=51 Identities=29% Similarity=0.433 Sum_probs=33.3
Q ss_pred hHHHHHHHHHH-HHhcc---eeEEeecccCccccceEEEecCCccccccCCchhHHHHHHHHHHHHHHcCCe
Q 019830 192 WPVTLFSMMIT-WIYGR---TFVVERNRLNKLKLQTWAKSKYNMQYFSQQPNESINRLIEEAILEAEEKGAR 259 (335)
Q Consensus 192 ~p~~~~~~~~~-w~~~~---~f~~~~~~~~~~~~q~w~~pr~~~~y~~~~~~~~in~~ie~ail~a~~~g~k 259 (335)
-|-...-++.+ |-.|- ..|.. -| .-+|-+| .|.||.+||+|..+|++.|++
T Consensus 210 ~pe~ia~~~~t~~~lglegg~lVaN------------Pv---Pee~eip--~eeie~~I~~a~~eae~~gi~ 264 (310)
T COG2313 210 SPEEIARILATKWQLGLEGGLLVAN------------PV---PEEFEIP--EEEIEALIERALAEAEALGIT 264 (310)
T ss_pred CHHHHHHHHHHHHHhCCCCceEEec------------CC---chhccCC--HHHHHHHHHHHHHHHHHcCCC
Confidence 45555555555 88753 33333 11 2245553 577999999999999998874
No 60
>smart00506 A1pp Appr-1"-p processing enzyme. Function determined by Martzen et al. Extended family detected by reciprocal PSI-BLAST searches (unpublished results, and Pehrson & Fuji).
Probab=25.21 E-value=1.6e+02 Score=24.04 Aligned_cols=42 Identities=14% Similarity=0.175 Sum_probs=32.4
Q ss_pred EecCCccccccCCchhHHHHHHHHHHHHHHcCCeEEEeeccccc
Q 019830 226 KSKYNMQYFSQQPNESINRLIEEAILEAEEKGARVISLGLLNQG 269 (335)
Q Consensus 226 ~pr~~~~y~~~~~~~~in~~ie~ail~a~~~g~kv~slg~lN~~ 269 (335)
.||++-++ +.+.+.+.+-+++...+|+++|.+.|.+=++.-+
T Consensus 79 ~p~~~~~~--~~~~~~l~~~~~~~l~~~~~~~~~sIa~P~igtG 120 (133)
T smart00506 79 GPRASGHS--NEGFELLENAYRNCLELAIELGITSVAIPLIGTG 120 (133)
T ss_pred CCCCCCCC--ccHHHHHHHHHHHHHHHHHHcCCCEEEECCccCC
Confidence 35555444 5777889999999999999999999988766543
No 61
>PRK01424 S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional
Probab=25.15 E-value=93 Score=31.75 Aligned_cols=54 Identities=26% Similarity=0.261 Sum_probs=36.4
Q ss_pred hhHHHHHHHHHHHHHHcCCeEEEeec---------cccccccccccceeeeecCCCceEeecC
Q 019830 240 ESINRLIEEAILEAEEKGARVISLGL---------LNQGEELNRYGGLFVHKNPELKIKVVDG 293 (335)
Q Consensus 240 ~~in~~ie~ail~a~~~g~kv~slg~---------lN~~~~ln~~g~l~v~~~p~l~vrvv~g 293 (335)
-.|...--++|.+|++.|=||++.|- -|+++---+.|+==+=-+|.-+.|+|||
T Consensus 252 ~~I~~eta~~In~ak~~G~RIiAVGTT~vRaLEsa~~~g~~~~~~g~TdiFI~PGy~f~vvD~ 314 (366)
T PRK01424 252 CSITPETAEIINKAKQEGRRIIAVGTTTLRTLESSCNNGIVKAGSFETDIFITPGFKFQTADM 314 (366)
T ss_pred EEECHHHHHHHHHHHHcCCeEEEEecceeeeehhhhcCCccccCCcccceEECCCCCCeEece
Confidence 34666778899999999999999883 2322211222332223379999999997
No 62
>cd08632 PI-PLCc_eta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=24.62 E-value=73 Score=30.89 Aligned_cols=46 Identities=13% Similarity=0.205 Sum_probs=35.1
Q ss_pred HHHHHHHHHcCCeEEEeeccccccccccccceeeeecCCCceEeecCCceehhhhhccCCC
Q 019830 247 EEAILEAEEKGARVISLGLLNQGEELNRYGGLFVHKNPELKIKVVDGSSLAVAVLTNSIPA 307 (335)
Q Consensus 247 e~ail~a~~~g~kv~slg~lN~~~~ln~~g~l~v~~~p~l~vrvv~g~~l~aavvl~~ip~ 307 (335)
.+|+.+|=++|+|++=|-.=+- ++-...|-||-|||..|-+.++=+
T Consensus 32 ~e~y~~aL~~GcRcvElD~Wdg---------------~~~eP~V~HG~Tlts~i~f~dv~~ 77 (253)
T cd08632 32 VDMYARVLQAGCRCVEVDCWDG---------------PDGEPVVHHGYTLTSKITFRDVIE 77 (253)
T ss_pred HHHHHHHHHcCCcEEEEEeecC---------------CCCCcEEeeCCCCccCcCHHHHHH
Confidence 4588999999999999887652 233578899999998876655433
No 63
>TIGR00075 hypD hydrogenase expression/formation protein HypD. HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes. This protein has been found in gram-negative and gram-positive bacteria and Archaea.
Probab=24.56 E-value=27 Score=35.58 Aligned_cols=69 Identities=19% Similarity=0.176 Sum_probs=52.5
Q ss_pred ceEEEecCCccccccCCchhH-----------HHHHHHHHHHHHHcCCeEEEeeccccccccccccceeeeecCCCceEe
Q 019830 222 QTWAKSKYNMQYFSQQPNESI-----------NRLIEEAILEAEEKGARVISLGLLNQGEELNRYGGLFVHKNPELKIKV 290 (335)
Q Consensus 222 q~w~~pr~~~~y~~~~~~~~i-----------n~~ie~ail~a~~~g~kv~slg~lN~~~~ln~~g~l~v~~~p~l~vrv 290 (335)
+||+|=|||+.-.||-.-|=| ...|.+||.-|.+.||-+.++|=+-+-.- ..|.|.-.|--.-+||+
T Consensus 43 Ht~aI~r~Gir~LLp~~IelisGPGCPVCVtp~~~ID~ai~LA~~~~vii~TfGDmlRVPG--s~~SL~~ara~GadVri 120 (369)
T TIGR00075 43 HTHTIMKYGLRDLLPENLELVHGPGCPVCVTPMERIDEAIELATIPEIIFCTFGDMMRVPG--SGGSLLQARAEGADVRI 120 (369)
T ss_pred chHHHHHhChHhhCCCCcEEecCCCCCcEeCcHHHHHHHHHHhCCCCeEEEecchhccCCC--CCCCHHHHHhCCCCEEE
Confidence 899999999988888876644 47899999999999999999998877442 13345555555566666
Q ss_pred ec
Q 019830 291 VD 292 (335)
Q Consensus 291 v~ 292 (335)
|=
T Consensus 121 VY 122 (369)
T TIGR00075 121 VY 122 (369)
T ss_pred Ee
Confidence 63
No 64
>PF04227 Indigoidine_A: Indigoidine synthase A like protein; InterPro: IPR007342 Members of this entry catalyze the hydrolysis of pseudouridine 5'-phosphate (PsiMP) to ribose 5-phosphate and uracil. It is also reported to be involved in the synthesis of indigoidine, which is a blue pigment synthesised by Erwinia chrysanthemi implicated in pathogenicity and protection from oxidative stress. IdgA is involved in indigoidine biosynthesis, but its specific function is unknown [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds; PDB: 1VKM_C.
Probab=24.44 E-value=31 Score=34.14 Aligned_cols=22 Identities=50% Similarity=0.690 Sum_probs=9.0
Q ss_pred CchhHHHHHHHHHHHHHHcCCe
Q 019830 238 PNESINRLIEEAILEAEEKGAR 259 (335)
Q Consensus 238 ~~~~in~~ie~ail~a~~~g~k 259 (335)
+.+.|++.||+|+.||+++|++
T Consensus 230 ~~~~i~~~I~~Al~ea~~~gi~ 251 (293)
T PF04227_consen 230 DGEEIESAIEQALAEAEEQGIR 251 (293)
T ss_dssp -HHHHHHHHHT-----------
T ss_pred CHHHHHHHHHHHHhhHhhcCCC
Confidence 5668999999999999999984
No 65
>PF13480 Acetyltransf_6: Acetyltransferase (GNAT) domain
Probab=24.39 E-value=83 Score=25.21 Aligned_cols=29 Identities=34% Similarity=0.255 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHHHHHHcCCeEEEeecccc
Q 019830 240 ESINRLIEEAILEAEEKGARVISLGLLNQ 268 (335)
Q Consensus 240 ~~in~~ie~ail~a~~~g~kv~slg~lN~ 268 (335)
..-.-++.++|.+|-+.|.+++.||--|.
T Consensus 110 ~~~~~l~~~~i~~a~~~g~~~~d~g~g~~ 138 (142)
T PF13480_consen 110 SPGRLLLWEAIRWAIERGLRYFDFGGGNE 138 (142)
T ss_pred CHHHHHHHHHHHHHHHCCCCEEEECCCCh
Confidence 34567788999999999999999997553
No 66
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=24.39 E-value=1.3e+02 Score=27.54 Aligned_cols=18 Identities=22% Similarity=0.342 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHcCCeE
Q 019830 243 NRLIEEAILEAEEKGARV 260 (335)
Q Consensus 243 n~~ie~ail~a~~~g~kv 260 (335)
.+.+++||.+|.++|+-+
T Consensus 132 ~~~~~~~~~~~~~~g~li 149 (255)
T cd04077 132 STALDAAVAAAVNAGVVV 149 (255)
T ss_pred CHHHHHHHHHHHHCCCEE
Confidence 456777788888877743
No 67
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=23.99 E-value=85 Score=28.44 Aligned_cols=29 Identities=31% Similarity=0.253 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHHHHHHcCCeEEEeecccc
Q 019830 240 ESINRLIEEAILEAEEKGARVISLGLLNQ 268 (335)
Q Consensus 240 ~~in~~ie~ail~a~~~g~kv~slg~lN~ 268 (335)
.|-|+.+.+|+..|.++|+|++++-.-++
T Consensus 121 SG~t~~~i~~~~~ak~~g~~iI~iT~~~~ 149 (192)
T PRK00414 121 SGNSGNIIKAIEAARAKGMKVITLTGKDG 149 (192)
T ss_pred CCCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 34588899999999999999999987543
No 68
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=23.87 E-value=58 Score=29.45 Aligned_cols=73 Identities=16% Similarity=0.143 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHcCCeEEEeeccccccccccccceeeeecCCCceEeecCCce--ehhhhhccCCCCCcceeeeccc
Q 019830 244 RLIEEAILEAEEKGARVISLGLLNQGEELNRYGGLFVHKNPELKIKVVDGSSL--AVAVLTNSIPAEQPKWSLEAFS 318 (335)
Q Consensus 244 ~~ie~ail~a~~~g~kv~slg~lN~~~~ln~~g~l~v~~~p~l~vrvv~g~~l--~aavvl~~ip~~~~~~~l~~~~ 318 (335)
+++++.+.+|++.|.||.=||. +.+.+..--+-.-++||+++|.-.||--= ....++.+|-+.-.++++.|.+
T Consensus 35 dl~~~l~~~~~~~~~~vfllG~--~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~s~~dil~VglG 109 (177)
T TIGR00696 35 DLMEELCQRAGKEKLPIFLYGG--KPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIARSGAGIVFVGLG 109 (177)
T ss_pred HHHHHHHHHHHHcCCeEEEECC--CHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHHcCCCEEEEEcC
Confidence 7788888899999999999997 34455555566778999999877766432 2245777777766667777654
No 69
>cd08631 PI-PLCc_delta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta4 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which
Probab=23.37 E-value=85 Score=30.50 Aligned_cols=50 Identities=16% Similarity=0.279 Sum_probs=35.9
Q ss_pred HHHHHHHHHcCCeEEEeeccccccccccccceeeeecCCCceEeecCCceehhhhhccCCCCCcc
Q 019830 247 EEAILEAEEKGARVISLGLLNQGEELNRYGGLFVHKNPELKIKVVDGSSLAVAVLTNSIPAEQPK 311 (335)
Q Consensus 247 e~ail~a~~~g~kv~slg~lN~~~~ln~~g~l~v~~~p~l~vrvv~g~~l~aavvl~~ip~~~~~ 311 (335)
.+|+.+|=++|+|++=|-.=+- . +-.-.|-||.|||..|-+.++=+..||
T Consensus 32 ~e~y~~aL~~GcRcvElD~wdg-----~----------~~eP~V~HG~tlts~i~f~~v~~~Ik~ 81 (258)
T cd08631 32 VEGYIRALKRGCRCVEVDVWDG-----P----------NGEPIVYHGHTFTSKILFKDVVAAVAQ 81 (258)
T ss_pred HHHHHHHHHcCCcEEEEEeecC-----C----------CCCcEEeeCCcccCCcCHHHHHHHHHH
Confidence 5688899999999998877551 1 224568999999988766655444343
No 70
>PF13624 SurA_N_3: SurA N-terminal domain; PDB: 3NRK_A.
Probab=22.89 E-value=69 Score=27.11 Aligned_cols=23 Identities=30% Similarity=0.601 Sum_probs=16.8
Q ss_pred CchhHHHHHHHHHH--HHHHcCCeE
Q 019830 238 PNESINRLIEEAIL--EAEEKGARV 260 (335)
Q Consensus 238 ~~~~in~~ie~ail--~a~~~g~kv 260 (335)
..+.++.+|++.++ +|++.|++|
T Consensus 76 ~~~~l~~lI~~~ll~q~A~~~gi~v 100 (154)
T PF13624_consen 76 KQQVLDQLIDQKLLLQEAKKLGISV 100 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 45578899999888 799999987
No 71
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=22.54 E-value=89 Score=28.77 Aligned_cols=22 Identities=41% Similarity=0.424 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHcCCeEEEeec
Q 019830 244 RLIEEAILEAEEKGARVISLGL 265 (335)
Q Consensus 244 ~~ie~ail~a~~~g~kv~slg~ 265 (335)
+-|-+||..|.++|++||.|-=
T Consensus 123 ~nVl~Ai~~Ak~~gm~vI~ltG 144 (176)
T COG0279 123 KNVLKAIEAAKEKGMTVIALTG 144 (176)
T ss_pred HHHHHHHHHHHHcCCEEEEEec
Confidence 4588999999999999999853
No 72
>PF14501 HATPase_c_5: GHKL domain
Probab=22.43 E-value=1.1e+02 Score=24.17 Aligned_cols=29 Identities=21% Similarity=0.393 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHcC-CeEEEeecccccc
Q 019830 242 INRLIEEAILEAEEKG-ARVISLGLLNQGE 270 (335)
Q Consensus 242 in~~ie~ail~a~~~g-~kv~slg~lN~~~ 270 (335)
+.+++|.||..+++.+ -|.|++.+-.++.
T Consensus 10 l~nlldNAiea~~~~~~~~~I~i~~~~~~~ 39 (100)
T PF14501_consen 10 LGNLLDNAIEACKKYEDKRFISISIREENG 39 (100)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEEecCC
Confidence 5789999999999988 8999998877664
No 73
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=22.41 E-value=1.3e+02 Score=27.41 Aligned_cols=20 Identities=15% Similarity=0.102 Sum_probs=12.8
Q ss_pred ecCCCceEeecCCceehhhh
Q 019830 282 KNPELKIKVVDGSSLAVAVL 301 (335)
Q Consensus 282 ~~p~l~vrvv~g~~l~aavv 301 (335)
..++-......|+|.+|+.|
T Consensus 217 ~~~~~~~~~~~GTS~Aap~v 236 (264)
T cd07487 217 AGVGSGYFEMSGTSMATPHV 236 (264)
T ss_pred CCCCCceEeccccchHHHHH
Confidence 34444556677888777665
No 74
>PF09312 SurA_N: SurA N-terminal domain; InterPro: IPR015391 The correct folding of outer membrane proteins in Gram negative bacteria is facilitated by the survival protein SurA []. This entry represents the domain found at the N terminus of the chaperone SurA. It is a helical domain of unknown function. The C terminus of the SurA protein folds back and forms part of this domain also but is not included in the current alignment. ; PDB: 3RGC_B 2PV3_B 1M5Y_A.
Probab=22.32 E-value=65 Score=26.83 Aligned_cols=23 Identities=30% Similarity=0.575 Sum_probs=16.6
Q ss_pred CchhHHHHHHHHHH--HHHHcCCeE
Q 019830 238 PNESINRLIEEAIL--EAEEKGARV 260 (335)
Q Consensus 238 ~~~~in~~ie~ail--~a~~~g~kv 260 (335)
+++.++++|++.+. +|++.|++|
T Consensus 43 ~~qvLd~LI~e~L~~q~ak~~gI~v 67 (118)
T PF09312_consen 43 RKQVLDQLIDEKLQLQEAKRLGIKV 67 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCT---
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 45678999988877 799999987
No 75
>cd03408 Band_7_5 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=22.29 E-value=82 Score=27.98 Aligned_cols=29 Identities=14% Similarity=0.248 Sum_probs=25.1
Q ss_pred chhHHHHHHHHHH-HHHHcCCeEEEeeccc
Q 019830 239 NESINRLIEEAIL-EAEEKGARVISLGLLN 267 (335)
Q Consensus 239 ~~~in~~ie~ail-~a~~~g~kv~slg~lN 267 (335)
++.|++.+++.+. +.++.|++|.+++..+
T Consensus 163 r~~i~~~v~~~l~~~~~~~Gi~i~~v~I~~ 192 (207)
T cd03408 163 RDELSKAVREALAPWFASFGLELVSVYIES 192 (207)
T ss_pred HHHHHHHHHHHHHHHHHhcCcEEEEEEEEe
Confidence 8889999998877 6889999999998754
No 76
>COG2131 ComEB Deoxycytidylate deaminase [Nucleotide transport and metabolism]
Probab=22.21 E-value=73 Score=28.99 Aligned_cols=26 Identities=31% Similarity=0.459 Sum_probs=22.4
Q ss_pred HHHHHHHHHcCCeEEEeeccccccccccccceeeeecCC
Q 019830 247 EEAILEAEEKGARVISLGLLNQGEELNRYGGLFVHKNPE 285 (335)
Q Consensus 247 e~ail~a~~~g~kv~slg~lN~~~~ln~~g~l~v~~~p~ 285 (335)
+.||++|-+.|+-. .|+++||.-+|-
T Consensus 82 ~NAil~aa~~g~~~-------------~~atlYvt~~PC 107 (164)
T COG2131 82 QNAILQAARHGVGL-------------EGATLYVTHFPC 107 (164)
T ss_pred HHHHHHHHhcCCCC-------------CCcEEEEEeccc
Confidence 46899999999865 789999999993
No 77
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=21.99 E-value=95 Score=28.71 Aligned_cols=39 Identities=10% Similarity=0.045 Sum_probs=28.5
Q ss_pred CchhHHHHHHHHHHHHHHcCCeEEEeeccccccccccccc
Q 019830 238 PNESINRLIEEAILEAEEKGARVISLGLLNQGEELNRYGG 277 (335)
Q Consensus 238 ~~~~in~~ie~ail~a~~~g~kv~slg~lN~~~~ln~~g~ 277 (335)
...|=|+.+.+++..|.++|+|++++-.-++++ |-+...
T Consensus 55 S~sG~t~~~~~~~~~a~~~g~~ii~iT~~~~s~-l~~~~d 93 (268)
T TIGR00393 55 SYSGESLELLNLIPHLKRLSHKIIAFTGSPNSS-LARAAD 93 (268)
T ss_pred eCCCCCHHHHHHHHHHHHcCCcEEEEECCCCCc-ccccCC
Confidence 344567888999999999999999998754433 433333
No 78
>cd08625 PI-PLCc_beta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 3. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=21.74 E-value=90 Score=30.26 Aligned_cols=46 Identities=17% Similarity=0.208 Sum_probs=34.6
Q ss_pred HHHHHHHHHcCCeEEEeeccccccccccccceeeeecCCCceEeecCCceehhhhhccC
Q 019830 247 EEAILEAEEKGARVISLGLLNQGEELNRYGGLFVHKNPELKIKVVDGSSLAVAVLTNSI 305 (335)
Q Consensus 247 e~ail~a~~~g~kv~slg~lN~~~~ln~~g~l~v~~~p~l~vrvv~g~~l~aavvl~~i 305 (335)
-+|+.+|=++|+|+|=|-.-+-. + |+-.-.|-||-|||..+-+.++
T Consensus 32 ~e~y~~aL~~GcRcvElD~wdg~------~-------~~~eP~v~Hg~t~t~~i~f~dv 77 (258)
T cd08625 32 VEMYRQVLLTGCRCIELDCWKGR------P-------PEEEPFITHGFTMTTEIPFKDV 77 (258)
T ss_pred HHHHHHHHHcCCCEEEEEecCCC------C-------CCCCCEEeeCCccccCcCHHHH
Confidence 45888999999999999876521 1 4456788999999997655443
No 79
>cd08593 PI-PLCc_delta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which is
Probab=21.58 E-value=95 Score=30.12 Aligned_cols=45 Identities=22% Similarity=0.333 Sum_probs=33.7
Q ss_pred HHHHHHHHHcCCeEEEeeccccccccccccceeeeecCCCceEeecCCceehhhhhccCC
Q 019830 247 EEAILEAEEKGARVISLGLLNQGEELNRYGGLFVHKNPELKIKVVDGSSLAVAVLTNSIP 306 (335)
Q Consensus 247 e~ail~a~~~g~kv~slg~lN~~~~ln~~g~l~v~~~p~l~vrvv~g~~l~aavvl~~ip 306 (335)
.+|+.+|=++|+|++=|-.=+- . +-.-.|-||.|||..+-+.++=
T Consensus 32 ~~~y~~aL~~GcRcvElD~wdg-----~----------~~eP~v~HG~t~t~~i~f~~v~ 76 (257)
T cd08593 32 TEAYIRALKKGCRCVELDCWDG-----P----------DGEPIIYHGHTLTSKILFKDVI 76 (257)
T ss_pred HHHHHHHHHhCCcEEEEEeecC-----C----------CCCcEEeeCCccccCcCHHHHH
Confidence 5688999999999998877551 1 2246789999999987655443
No 80
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=21.46 E-value=1.1e+02 Score=24.67 Aligned_cols=36 Identities=31% Similarity=0.318 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHHHHHHcCCeEEEeecccccccccccc
Q 019830 240 ESINRLIEEAILEAEEKGARVISLGLLNQGEELNRYG 276 (335)
Q Consensus 240 ~~in~~ie~ail~a~~~g~kv~slg~lN~~~~ln~~g 276 (335)
.+=++.+-+++..|+++|++|+++-. |.+..+-+..
T Consensus 63 sg~~~~~~~~~~~ak~~g~~vi~iT~-~~~~~l~~~a 98 (131)
T PF01380_consen 63 SGETRELIELLRFAKERGAPVILITS-NSESPLARLA 98 (131)
T ss_dssp SSTTHHHHHHHHHHHHTTSEEEEEES-STTSHHHHHS
T ss_pred cccchhhhhhhHHHHhcCCeEEEEeC-CCCCchhhhC
Confidence 34457777788899999999988764 3334443333
No 81
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=21.22 E-value=85 Score=30.06 Aligned_cols=26 Identities=38% Similarity=0.380 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHHHcCCeEEEeecc
Q 019830 241 SINRLIEEAILEAEEKGARVISLGLL 266 (335)
Q Consensus 241 ~in~~ie~ail~a~~~g~kv~slg~l 266 (335)
|=++.+.++...|.++|+|||++=-.
T Consensus 188 G~t~e~i~~a~~ak~~ga~vIaiT~~ 213 (281)
T COG1737 188 GYTREIVEAAELAKERGAKVIAITDS 213 (281)
T ss_pred CCcHHHHHHHHHHHHCCCcEEEEcCC
Confidence 44678888999999999999998654
No 82
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=21.04 E-value=1.2e+02 Score=25.07 Aligned_cols=35 Identities=14% Similarity=-0.000 Sum_probs=24.5
Q ss_pred HHHHHHHHHHcCCeEEEeeccccccccccccceeeeecCC
Q 019830 246 IEEAILEAEEKGARVISLGLLNQGEELNRYGGLFVHKNPE 285 (335)
Q Consensus 246 ie~ail~a~~~g~kv~slg~lN~~~~ln~~g~l~v~~~p~ 285 (335)
|+++..++++.|+++++ ..-+ .++|+..+.-|.|+
T Consensus 80 vda~~~~l~~~G~~v~~-~p~~----~~~~~~~~~i~dp~ 114 (136)
T cd08342 80 AAAAYERAVARGAKPVQ-EPVE----EPGELKIAAIKGYG 114 (136)
T ss_pred HHHHHHHHHHcCCeEcc-Ccee----cCCeEEEEEEeccC
Confidence 89999999999999985 2222 34555555566673
No 83
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=20.95 E-value=88 Score=29.26 Aligned_cols=35 Identities=29% Similarity=0.311 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHHHcCCeEEEeeccccccccccccc
Q 019830 241 SINRLIEEAILEAEEKGARVISLGLLNQGEELNRYGG 277 (335)
Q Consensus 241 ~in~~ie~ail~a~~~g~kv~slg~lN~~~~ln~~g~ 277 (335)
|-++.+.+++..|.++|+||+++.. ++..|-+...
T Consensus 186 G~t~~~~~~~~~ak~~g~~vI~IT~--~~s~l~~~ad 220 (284)
T PRK11302 186 GRTKSLVELAQLARENGATVIAITS--AGSPLAREAT 220 (284)
T ss_pred CCCHHHHHHHHHHHHcCCeEEEECC--CCChhHHhCC
Confidence 4478888899999999999999995 3445655543
No 84
>cd08598 PI-PLC1c_yeast Catalytic domain of putative yeast phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of putative phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) encoded by PLC1 genes from yeasts, which are homologs of the delta isoforms of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The prototype of this CD is protein Plc1p encoded by PLC1 genes fro
Probab=20.87 E-value=98 Score=29.56 Aligned_cols=44 Identities=18% Similarity=0.323 Sum_probs=32.0
Q ss_pred HHHHHHHHHcCCeEEEeeccccccccccccceeeeecCCCceEeecCCceehhhhhccC
Q 019830 247 EEAILEAEEKGARVISLGLLNQGEELNRYGGLFVHKNPELKIKVVDGSSLAVAVLTNSI 305 (335)
Q Consensus 247 e~ail~a~~~g~kv~slg~lN~~~~ln~~g~l~v~~~p~l~vrvv~g~~l~aavvl~~i 305 (335)
.+|+.+|=++|+|++=|-.=+ -|+-...|-||-|+|..+-+.++
T Consensus 32 ~~~y~~aL~~GcRcvElD~wd---------------g~~~ep~V~HG~t~ts~i~f~dv 75 (231)
T cd08598 32 VEGYIRALQRGCRCVEIDVWD---------------GDDGEPVVTHGYTLTSSVPFRDV 75 (231)
T ss_pred HHHHHHHHHhCCcEEEEEeec---------------CCCCCcEEeeCCCCcCceEHHHH
Confidence 468889999999999887633 12345678899999986644433
No 85
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=20.74 E-value=1e+02 Score=27.67 Aligned_cols=25 Identities=12% Similarity=0.303 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHcCCeEEEeeccc
Q 019830 243 NRLIEEAILEAEEKGARVISLGLLN 267 (335)
Q Consensus 243 n~~ie~ail~a~~~g~kv~slg~lN 267 (335)
...+++|..++.++||||++.|.=+
T Consensus 125 ~~~~~~~a~~lk~~gV~i~~vGiG~ 149 (192)
T cd01473 125 KKELQDISLLYKEENVKLLVVGVGA 149 (192)
T ss_pred hhhHHHHHHHHHHCCCEEEEEEecc
Confidence 3468888999999999998888764
No 86
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=20.36 E-value=1.1e+02 Score=28.01 Aligned_cols=27 Identities=22% Similarity=0.292 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHcCCeEEEeeccccc
Q 019830 243 NRLIEEAILEAEEKGARVISLGLLNQG 269 (335)
Q Consensus 243 n~~ie~ail~a~~~g~kv~slg~lN~~ 269 (335)
++.+.+|+..|.++|+|||++-.-.++
T Consensus 122 s~~v~~a~~~Ak~~G~~vI~IT~~~~s 148 (196)
T PRK10886 122 SRDIVKAVEAAVTRDMTIVALTGYDGG 148 (196)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 677889999999999999999865443
No 87
>PRK00147 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional
Probab=20.05 E-value=1.3e+02 Score=30.40 Aligned_cols=54 Identities=28% Similarity=0.497 Sum_probs=37.6
Q ss_pred CchhHHHHHHHHHHHHHHcCCeEEEeecc----------ccc--cccccccceeeeecCCCceEeecC
Q 019830 238 PNESINRLIEEAILEAEEKGARVISLGLL----------NQG--EELNRYGGLFVHKNPELKIKVVDG 293 (335)
Q Consensus 238 ~~~~in~~ie~ail~a~~~g~kv~slg~l----------N~~--~~ln~~g~l~v~~~p~l~vrvv~g 293 (335)
|.-.|++.--++|.+|.+.|-||++.|-- +++ +.-.|--.||+ +|.-+.|+|||
T Consensus 228 E~~~I~~~ta~~i~~ak~~G~rIiAVGTT~vRaLEsa~~~~g~~~~~~G~T~lfI--~Pgy~f~vvD~ 293 (342)
T PRK00147 228 EWYEVPQETADAINAAKARGGRVIAVGTTSVRTLESAARAGGELKPFSGWTDIFI--YPGYRFKVVDA 293 (342)
T ss_pred EEEEECHHHHHHHHHHHHcCCeEEEEcccchhhHHHHHccCCccccCCcccceEE--CCCCCCeEece
Confidence 33457777889999999999999999831 111 22223334444 69999999997
Done!