Query 019830
Match_columns 335
No_of_seqs 226 out of 1243
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 07:44:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019830.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019830hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3jx9_A Putative phosphoheptose 68.7 2.7 9.4E-05 36.6 2.8 68 234-305 81-158 (170)
2 2od4_A Hypothetical protein; m 49.1 0.34 1.2E-05 37.9 -5.8 48 256-312 35-83 (101)
3 1win_A Flotillin 2; BAND 7 dom 44.1 15 0.0005 30.4 3.0 30 238-267 91-121 (143)
4 4gim_A Pseudouridine-5'-phosph 38.2 15 0.00053 35.4 2.5 22 238-259 267-288 (335)
5 2f5t_X Archaeal transcriptiona 38.1 71 0.0024 28.8 6.9 54 244-297 36-92 (233)
6 4fvg_A Stomatin; mixed alpha-b 31.6 33 0.0011 27.9 3.2 28 238-265 86-114 (133)
7 4ex8_A ALNA; alpha/beta/alpha- 30.5 26 0.00089 33.6 2.7 22 238-259 246-267 (316)
8 2rpb_A Hypothetical membrane p 30.3 23 0.0008 27.4 2.0 30 238-267 77-107 (113)
9 1tk9_A Phosphoheptose isomeras 30.1 32 0.0011 28.5 3.0 24 242-265 122-145 (188)
10 4gel_A Mitochondrial cardiolip 30.1 24 0.00081 30.4 2.2 49 244-294 84-145 (220)
11 2yva_A DNAA initiator-associat 30.0 32 0.0011 28.8 3.0 26 241-266 120-145 (196)
12 2dx6_A Hypothetical protein TT 30.0 1.4E+02 0.0048 24.7 7.0 59 206-269 58-116 (159)
13 2noc_A Putative periplasmic pr 29.3 50 0.0017 26.3 3.8 43 240-282 49-91 (99)
14 3cvj_A Putative phosphoheptose 28.4 33 0.0011 30.1 2.9 26 241-266 119-144 (243)
15 3nyi_A FAT acid-binding protei 28.2 30 0.001 32.2 2.7 55 245-299 72-130 (297)
16 4ggj_A Mitochondrial cardiolip 27.2 30 0.001 29.8 2.3 53 244-296 72-135 (196)
17 1x92_A APC5045, phosphoheptose 26.9 39 0.0013 28.4 3.0 24 242-265 125-148 (199)
18 1sh7_A Extracellular subtilisi 26.2 49 0.0017 30.1 3.7 17 244-260 135-151 (284)
19 2i2w_A Phosphoheptose isomeras 25.9 39 0.0013 29.1 2.8 23 243-265 144-166 (212)
20 1m3s_A Hypothetical protein YC 24.8 45 0.0016 27.6 3.0 25 242-266 91-115 (186)
21 1pq3_A Arginase II, mitochondr 24.7 79 0.0027 29.1 4.9 63 239-303 69-149 (306)
22 2xbl_A Phosphoheptose isomeras 23.1 51 0.0017 27.5 3.0 23 243-265 129-151 (198)
23 1jeo_A MJ1247, hypothetical pr 23.0 44 0.0015 27.5 2.5 25 242-266 94-118 (180)
24 2iy9_A SUBA; toxin, shiga, pla 22.8 96 0.0033 28.7 5.1 17 242-258 159-175 (347)
25 3pl5_A SMU_165, putative uncha 22.8 41 0.0014 31.9 2.5 55 245-299 103-161 (320)
26 1z4e_A Transcriptional regulat 22.8 63 0.0022 24.7 3.3 34 236-269 96-130 (153)
27 1t57_A Conserved protein MTH16 22.0 81 0.0028 28.4 4.1 76 222-299 11-117 (206)
28 1xmt_A Putative acetyltransfer 21.9 65 0.0022 24.8 3.2 27 238-264 49-76 (103)
29 3sho_A Transcriptional regulat 21.4 55 0.0019 27.0 2.8 25 242-266 99-123 (187)
30 1vim_A Hypothetical protein AF 21.2 55 0.0019 27.9 2.8 27 240-266 99-125 (200)
31 3qks_C DNA double-strand break 20.9 13 0.00043 24.4 -1.0 24 232-255 2-25 (34)
32 2xhz_A KDSD, YRBH, arabinose 5 20.4 53 0.0018 27.0 2.5 25 241-265 107-131 (183)
33 3lup_A DEGV family protein; PS 20.3 53 0.0018 30.3 2.7 55 245-299 71-126 (285)
No 1
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=68.72 E-value=2.7 Score=36.64 Aligned_cols=68 Identities=13% Similarity=-0.053 Sum_probs=45.8
Q ss_pred cccCCchhHHHHHHHHHHHHHHcCCeEEEeecccccccc----c------cccceeeeecCCCceEeecCCceehhhhhc
Q 019830 234 FSQQPNESINRLIEEAILEAEEKGARVISLGLLNQGEEL----N------RYGGLFVHKNPELKIKVVDGSSLAVAVLTN 303 (335)
Q Consensus 234 ~~~~~~~~in~~ie~ail~a~~~g~kv~slg~lN~~~~l----n------~~g~l~v~~~p~l~vrvv~g~~l~aavvl~ 303 (335)
++-....+.|..+-+..++|+++|++|+.+-.+-..++. = ..|.+ -.++-. |+.-.+|+|++.|.|
T Consensus 81 vii~S~Sg~n~~~ie~A~~ake~G~~vIaITs~~~~~~~~~~L~d~an~~p~gll---~~e~g~-r~g~~Sti~~~~i~~ 156 (170)
T 3jx9_A 81 VLIFTPDTERSDLLASLARYDAWHTPYSIITLGDVTETLERSIAPLALKFDKGLL---PAEDGS-RHGLPSLALGAFLLT 156 (170)
T ss_dssp EEEEESCSCCHHHHHHHHHHHHHTCCEEEEESSCCCTTGGGSSSCEECCCCSCSE---ECTTSC-EECCCHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHCCCcEEEEeCcchhccccCcHHHHHhCCCCCce---ECCCCC-EechhHHHHHHHHHH
Confidence 333445668998999999999999999999884444432 1 12211 123433 777888888888877
Q ss_pred cC
Q 019830 304 SI 305 (335)
Q Consensus 304 ~i 305 (335)
.|
T Consensus 157 ~i 158 (170)
T 3jx9_A 157 HI 158 (170)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 2
>2od4_A Hypothetical protein; metagenomics target, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Uncultured marine organism} SCOP: d.58.4.20
Probab=49.10 E-value=0.34 Score=37.88 Aligned_cols=48 Identities=21% Similarity=0.358 Sum_probs=36.4
Q ss_pred cCCeEEEeeccccc-cccccccceeeeecCCCceEeecCCceehhhhhccCCCCCcce
Q 019830 256 KGARVISLGLLNQG-EELNRYGGLFVHKNPELKIKVVDGSSLAVAVLTNSIPAEQPKW 312 (335)
Q Consensus 256 ~g~kv~slg~lN~~-~~ln~~g~l~v~~~p~l~vrvv~g~~l~aavvl~~ip~~~~~~ 312 (335)
...||+|||+.... -+-|.+..+|+..|||.. ||-.|...|-++++||
T Consensus 35 wspkvislgaisaefvqsnensgmyiihypdkq---------taisvfdkikpevdev 83 (101)
T 2od4_A 35 WSPKVISLGAISAEFVQSNENSGMYIIHYPDKQ---------TAISVFDKIKPEVDEV 83 (101)
T ss_dssp HHHHHHHHTCSEEEEEEEETTEEEEEEEESSHH---------HHHHHHHHHHHHHHHH
T ss_pred CCccEEEecceeHhhhccCcCCceEEEECCCcc---------ceeehhhccCcchhhh
Confidence 34689999998653 356778889999999864 6777888887777774
No 3
>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1
Probab=44.13 E-value=15 Score=30.41 Aligned_cols=30 Identities=13% Similarity=0.381 Sum_probs=26.3
Q ss_pred CchhHHHHHHHHHH-HHHHcCCeEEEeeccc
Q 019830 238 PNESINRLIEEAIL-EAEEKGARVISLGLLN 267 (335)
Q Consensus 238 ~~~~in~~ie~ail-~a~~~g~kv~slg~lN 267 (335)
+++.||+.|.+.+. ++++.|+||.+...-+
T Consensus 91 ~R~~i~~~v~~~~~~~~~~~Gi~V~~v~Ikd 121 (143)
T 1win_A 91 DRDQFAKLVREVAAPDVGRMGIEILSFTIKD 121 (143)
T ss_dssp THHHHHHHHHHHHHHHHTTTTEEEEEEECCC
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEEEEEe
Confidence 68999999999998 6799999999987654
No 4
>4gim_A Pseudouridine-5'-phosphate glycosidase; alpha-beta-alpha sandwich fold, hydrolase; HET: PSU; 1.80A {Escherichia coli} PDB: 4gij_A 4gik_A* 4gil_A*
Probab=38.22 E-value=15 Score=35.41 Aligned_cols=22 Identities=41% Similarity=0.675 Sum_probs=19.8
Q ss_pred CchhHHHHHHHHHHHHHHcCCe
Q 019830 238 PNESINRLIEEAILEAEEKGAR 259 (335)
Q Consensus 238 ~~~~in~~ie~ail~a~~~g~k 259 (335)
..+-|++.||+|+.||++.|++
T Consensus 267 ~~~~i~~~I~~Al~eA~~~gI~ 288 (335)
T 4gim_A 267 PEHTINAAIDQAVAEAEAQGVI 288 (335)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHHHHHcCCc
Confidence 4677999999999999999985
No 5
>2f5t_X Archaeal transcriptional regulator TRMB; sugar-binding; HET: MAL; 1.45A {Thermococcus litoralis} SCOP: b.38.5.1 d.136.1.5
Probab=38.14 E-value=71 Score=28.80 Aligned_cols=54 Identities=22% Similarity=0.250 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHcCCeEEEeecccc-ccccccccceeeeec--CCCceEeecCCcee
Q 019830 244 RLIEEAILEAEEKGARVISLGLLNQ-GEELNRYGGLFVHKN--PELKIKVVDGSSLA 297 (335)
Q Consensus 244 ~~ie~ail~a~~~g~kv~slg~lN~-~~~ln~~g~l~v~~~--p~l~vrvv~g~~l~ 297 (335)
+-|++++.+|.++||+|..+--=+. .+++.+-+..|++.. |...+=++|++...
T Consensus 36 ~~l~~~L~~A~~rGV~V~liv~~~~~~~~l~~~~~~~vr~~~~~~p~~vi~D~~e~l 92 (233)
T 2f5t_X 36 ETIREDLIKTLERGVTVSLYIDKIPDLSEFKGKGNFFVRQFYKLNHLIGMTDGKEVV 92 (233)
T ss_dssp HHHHHHHHHHHHTTCEEEEEESSCCCCGGGTTSSEEEEEECSCCCSEEEEETTTEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEEcCCcchhhhcccceEEEEEccCCCcEEEEEEchhhc
Confidence 6788999999999998877644333 456777778855433 45566677776655
No 6
>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A
Probab=31.56 E-value=33 Score=27.85 Aligned_cols=28 Identities=14% Similarity=0.298 Sum_probs=24.6
Q ss_pred CchhHHHHHHHHHH-HHHHcCCeEEEeec
Q 019830 238 PNESINRLIEEAIL-EAEEKGARVISLGL 265 (335)
Q Consensus 238 ~~~~in~~ie~ail-~a~~~g~kv~slg~ 265 (335)
+++.||+.|.+.+. .+++.|++|.+..+
T Consensus 86 ~r~~i~~~i~~~l~~~~~~~GI~V~~V~i 114 (133)
T 4fvg_A 86 DREEIAHHMQSTLDDATDDWGIKVERVEI 114 (133)
T ss_dssp CHHHHHHHHHHHHHHHHGGGTEEEEEEEE
T ss_pred hHHHHHHHHHHHHHHHHhcCCEEEEEEEE
Confidence 67889999999988 68999999998865
No 7
>4ex8_A ALNA; alpha/beta/alpha-domain, C-glycosynthase, divalent metal ION ligase; 2.10A {Streptomyces SP} PDB: 4ex9_A*
Probab=30.51 E-value=26 Score=33.60 Aligned_cols=22 Identities=18% Similarity=0.362 Sum_probs=19.3
Q ss_pred CchhHHHHHHHHHHHHHHcCCe
Q 019830 238 PNESINRLIEEAILEAEEKGAR 259 (335)
Q Consensus 238 ~~~~in~~ie~ail~a~~~g~k 259 (335)
..+-|++.||+|+.||+++|++
T Consensus 246 ~~~~i~~~I~~Al~eA~~~gi~ 267 (316)
T 4ex8_A 246 DEAIVEAAIAEALAQCDQEGIV 267 (316)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHHHHHcCCc
Confidence 4556999999999999999984
No 8
>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii}
Probab=30.30 E-value=23 Score=27.41 Aligned_cols=30 Identities=13% Similarity=0.245 Sum_probs=25.8
Q ss_pred CchhHHHHHHHHHH-HHHHcCCeEEEeeccc
Q 019830 238 PNESINRLIEEAIL-EAEEKGARVISLGLLN 267 (335)
Q Consensus 238 ~~~~in~~ie~ail-~a~~~g~kv~slg~lN 267 (335)
+++.|++.|.+.+. ++++.|++|.+...-|
T Consensus 77 ~R~~i~~~i~~~l~~~~~~~Gi~v~~v~I~~ 107 (113)
T 2rpb_A 77 GRDIINARLREELDKITDRWGVKITRVEIQR 107 (113)
T ss_dssp CHHHHHHHHHHHHHHHHGGGTEECCCEEECC
T ss_pred CHHHHHHHHHHHHHHHHHhcCeEEEEEEEEE
Confidence 68999999999998 6799999999887643
No 9
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=30.15 E-value=32 Score=28.48 Aligned_cols=24 Identities=21% Similarity=0.126 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHcCCeEEEeec
Q 019830 242 INRLIEEAILEAEEKGARVISLGL 265 (335)
Q Consensus 242 in~~ie~ail~a~~~g~kv~slg~ 265 (335)
=++.+.+++..|.++|+||+++-.
T Consensus 122 ~t~~~~~~~~~ak~~g~~vi~iT~ 145 (188)
T 1tk9_A 122 KSPNVLEALKKAKELNMLCLGLSG 145 (188)
T ss_dssp CCHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeC
Confidence 467788899999999999998865
No 10
>4gel_A Mitochondrial cardiolipin hydrolase; piRNA, phospholipase D, nuclease; 1.76A {Drosophila melanogaster} PDB: 4gem_A 4gen_A
Probab=30.13 E-value=24 Score=30.39 Aligned_cols=49 Identities=14% Similarity=0.111 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHcCCeEEEeeccccc----------cccccccceeeeecC---CCceEeecCC
Q 019830 244 RLIEEAILEAEEKGARVISLGLLNQG----------EELNRYGGLFVHKNP---ELKIKVVDGS 294 (335)
Q Consensus 244 ~~ie~ail~a~~~g~kv~slg~lN~~----------~~ln~~g~l~v~~~p---~l~vrvv~g~ 294 (335)
+.|-+|+.+|-++||+|==|- +.. +.++.++.......+ ..|.-|+||.
T Consensus 84 ~~I~~aL~~Aa~RGV~VRii~--D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~K~~viD~~ 145 (220)
T 4gel_A 84 LFLADSIKRALQRGVIIRIIS--DGEMVYSKGSQISMLAQLGVPVRVPITTNLMHNKFCIIDGF 145 (220)
T ss_dssp HHHHHHHHHHHHHTCEEEEEC--CTTTTTSTTCHHHHHHHTTCCEEECCSSSCBCCCEEEESCH
T ss_pred HHHHHHHHHHHHcCCeEEEEE--echhhhhhHHHHHHHHhcCCcEEeecccccccceeEEEcch
Confidence 457889999999999986652 221 112333443333333 4577788874
No 11
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=29.98 E-value=32 Score=28.83 Aligned_cols=26 Identities=19% Similarity=0.172 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHHcCCeEEEeecc
Q 019830 241 SINRLIEEAILEAEEKGARVISLGLL 266 (335)
Q Consensus 241 ~in~~ie~ail~a~~~g~kv~slg~l 266 (335)
|=++.+.+|+..|.++|+||+++-.-
T Consensus 120 G~t~~~i~~~~~ak~~g~~vI~IT~~ 145 (196)
T 2yva_A 120 GNSRDIVKAVEAAVTRDMTIVALTGY 145 (196)
T ss_dssp SCCHHHHHHHHHHHHTTCEEEEEECT
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 34677888999999999999988653
No 12
>2dx6_A Hypothetical protein TTHA0132; conserved hypothetical protein, structural genomics, NPPSFA; 1.78A {Thermus thermophilus} PDB: 3v45_A
Probab=29.98 E-value=1.4e+02 Score=24.72 Aligned_cols=59 Identities=20% Similarity=0.215 Sum_probs=42.0
Q ss_pred cceeEEeecccCccccceEEEecCCccccccCCchhHHHHHHHHHHHHHHcCCeEEEeeccccc
Q 019830 206 GRTFVVERNRLNKLKLQTWAKSKYNMQYFSQQPNESINRLIEEAILEAEEKGARVISLGLLNQG 269 (335)
Q Consensus 206 ~~~f~~~~~~~~~~~~q~w~~pr~~~~y~~~~~~~~in~~ie~ail~a~~~g~kv~slg~lN~~ 269 (335)
|+..+.+.++|.-...--=+-|+|+ +.+.+.+.+-++++...|++.|.|-|++-++.-+
T Consensus 58 G~a~it~~~~L~~~~Vih~vgp~~~-----~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~igtG 116 (159)
T 2dx6_A 58 GEAAVTGAGNLPVRYVIHAAVLGDE-----PASLETVRKATKSALEKAVELGLKTVAFPLLGTG 116 (159)
T ss_dssp TCEEEEECTTSSSSEEEEEEEESSS-----CCCHHHHHHHHHHHHHHHHHTTCSEEEECCTTSS
T ss_pred CcEEEecCCCCCCCEEEEEeCCCCC-----CchHHHHHHHHHHHHHHHHHcCCcEEEECCccCC
Confidence 5677777777653222222347766 4567788888888888999999999999887654
No 13
>2noc_A Putative periplasmic protein; GFT STR106, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella choleraesuis} SCOP: d.230.6.1
Probab=29.28 E-value=50 Score=26.32 Aligned_cols=43 Identities=26% Similarity=0.274 Sum_probs=27.9
Q ss_pred hhHHHHHHHHHHHHHHcCCeEEEeeccccccccccccceeeee
Q 019830 240 ESINRLIEEAILEAEEKGARVISLGLLNQGEELNRYGGLFVHK 282 (335)
Q Consensus 240 ~~in~~ie~ail~a~~~g~kv~slg~lN~~~~ln~~g~l~v~~ 282 (335)
.++.+.-++.-.+||++|+|-.-.=..+.+..+-+.-+||-++
T Consensus 49 ~s~~da~~~La~kAd~~GA~~Y~Iis~~~~~~~~~tA~iYk~~ 91 (99)
T 2noc_A 49 MSPLDAREDLIKKADEKGADVVVLTSGQTENKIHGTADIYKKK 91 (99)
T ss_dssp CCHHHHHHHHHHHHHHTCCSEEECCSCCSSSSCCCEEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEEEEcCCCcEEEEEEeecCc
Confidence 4455555555558999999866555555555666666777544
No 14
>3cvj_A Putative phosphoheptose isomerase; rossman fold, 3-layer (ABA) sandwich, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.00A {Bacillus halodurans c-125}
Probab=28.38 E-value=33 Score=30.11 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHHHcCCeEEEeecc
Q 019830 241 SINRLIEEAILEAEEKGARVISLGLL 266 (335)
Q Consensus 241 ~in~~ie~ail~a~~~g~kv~slg~l 266 (335)
+-|+.+.+|+..|.++|+|||++-..
T Consensus 119 G~t~~~i~~~~~Ak~~G~~vI~IT~~ 144 (243)
T 3cvj_A 119 GRNTVPVEMAIESRNIGAKVIAMTSM 144 (243)
T ss_dssp CCSHHHHHHHHHHHHHTCEEEEEECH
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 45678889999999999999988543
No 15
>3nyi_A FAT acid-binding protein; stearic acid, DEGV family protein, structural genomics, PSI- protein structure initiative; HET: STE; 1.90A {Eubacterium ventriosum} SCOP: c.119.1.0
Probab=28.16 E-value=30 Score=32.19 Aligned_cols=55 Identities=16% Similarity=0.181 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHcCCeEEEeeccccccccccc----cceeeeecCCCceEeecCCceehh
Q 019830 245 LIEEAILEAEEKGARVISLGLLNQGEELNRY----GGLFVHKNPELKIKVVDGSSLAVA 299 (335)
Q Consensus 245 ~ie~ail~a~~~g~kv~slg~lN~~~~ln~~----g~l~v~~~p~l~vrvv~g~~l~aa 299 (335)
.++++..+.-+.|-.||++.+.-+--.--.+ .+.+-+++|+.+|+|||-.+..++
T Consensus 72 ~~~~~f~~l~~~g~~ii~i~iSs~LSGTy~sA~~aa~~~~e~~~~~~I~ViDS~~~s~g 130 (297)
T 3nyi_A 72 SYADVFRSFVEQGFPVVCFTITTLFSGSYNSAINAKSLVLEDYPDANICVIDSKQNTVT 130 (297)
T ss_dssp HHHHHHHHHHTTTCCEEEEESCTTTCSHHHHHHHHHHHHHHHCTTCCEEEEECSCCHHH
T ss_pred HHHHHHHHHHHCCCeEEEEECCCcHhHHHHHHHHHHHHHHhhCCCCeEEEEeCCchHHH
Confidence 3566677777778999999887663211111 122236789999999998876543
No 16
>4ggj_A Mitochondrial cardiolipin hydrolase; piRNA pathway, protein-RNA interactions, piRNA RNAI, HKD MOT zinc finger, nuclease, nucleic acid binding; 1.75A {Mus musculus} PDB: 4ggk_A
Probab=27.21 E-value=30 Score=29.85 Aligned_cols=53 Identities=21% Similarity=0.169 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHcCCeEEEee-----cccc--cccccc-ccceeeeecC---CCceEeecCCce
Q 019830 244 RLIEEAILEAEEKGARVISLG-----LLNQ--GEELNR-YGGLFVHKNP---ELKIKVVDGSSL 296 (335)
Q Consensus 244 ~~ie~ail~a~~~g~kv~slg-----~lN~--~~~ln~-~g~l~v~~~p---~l~vrvv~g~~l 296 (335)
+.|.+|+.+|-++||+|==+- ..|. -+.|.. |-+++..+.+ .-|+=||||.+.
T Consensus 72 ~~i~~aL~~aa~rGV~Vrii~D~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~H~K~~viD~~~~ 135 (196)
T 4ggj_A 72 PQLGRAVQLLHQRGVRVRVITDCDYMALNGSQIGLLRKAGIQVRHDQDLGYMHHKFAIVDKKVL 135 (196)
T ss_dssp HHHHHHHHHHHHTTCEEEEEESSCCC---CCHHHHHHHTTCEEEECCSSSCCCCEEEEETTTEE
T ss_pred HHHHHHHHHHHHcCCcEEEEEecccccccHHHHHHHHhcCCCcccccccccccCcEEEEcceEE
Confidence 457889999999999984431 1111 122333 3345544433 457778888754
No 17
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=26.91 E-value=39 Score=28.43 Aligned_cols=24 Identities=21% Similarity=0.169 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHcCCeEEEeec
Q 019830 242 INRLIEEAILEAEEKGARVISLGL 265 (335)
Q Consensus 242 in~~ie~ail~a~~~g~kv~slg~ 265 (335)
=++.+.+|+..|.++|+||+++-.
T Consensus 125 ~t~~~i~~~~~ak~~g~~vI~IT~ 148 (199)
T 1x92_A 125 NSANVIQAIQAAHDREMLVVALTG 148 (199)
T ss_dssp CCHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCHHHHHHHHHHHHCCCEEEEEEC
Confidence 367778899999999999999865
No 18
>1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A*
Probab=26.15 E-value=49 Score=30.13 Aligned_cols=17 Identities=18% Similarity=0.306 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHcCCeE
Q 019830 244 RLIEEAILEAEEKGARV 260 (335)
Q Consensus 244 ~~ie~ail~a~~~g~kv 260 (335)
+.+++||.+|.++|+-|
T Consensus 135 ~~~~~ai~~a~~~gi~v 151 (284)
T 1sh7_A 135 TALDSAVQGAIQSGVSF 151 (284)
T ss_dssp HHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHCCCEE
Confidence 56778888888888643
No 19
>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A
Probab=25.89 E-value=39 Score=29.05 Aligned_cols=23 Identities=39% Similarity=0.432 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHcCCeEEEeec
Q 019830 243 NRLIEEAILEAEEKGARVISLGL 265 (335)
Q Consensus 243 n~~ie~ail~a~~~g~kv~slg~ 265 (335)
++.+.+|+..|.++|+||+++-.
T Consensus 144 t~~~i~~~~~ak~~G~~vIaIT~ 166 (212)
T 2i2w_A 144 SANVIKAIAAAREKGMKVITLTG 166 (212)
T ss_dssp CHHHHHHHHHHHHHTCEEEEEEE
T ss_pred CHHHHHHHHHHHHCCCeEEEEEC
Confidence 46677889999999999998854
No 20
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=24.80 E-value=45 Score=27.60 Aligned_cols=25 Identities=12% Similarity=0.049 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHcCCeEEEeecc
Q 019830 242 INRLIEEAILEAEEKGARVISLGLL 266 (335)
Q Consensus 242 in~~ie~ail~a~~~g~kv~slg~l 266 (335)
=++.+.+++..|.++|+||+++-.-
T Consensus 91 ~t~~~~~~~~~ak~~g~~vi~IT~~ 115 (186)
T 1m3s_A 91 ETKSLIHTAAKAKSLHGIVAALTIN 115 (186)
T ss_dssp CCHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CcHHHHHHHHHHHHCCCEEEEEECC
Confidence 3467778889999999999988653
No 21
>1pq3_A Arginase II, mitochondrial precursor; biosynthetic protein, hydrolase; HET: S2C; 2.70A {Homo sapiens} SCOP: c.42.1.1
Probab=24.71 E-value=79 Score=29.11 Aligned_cols=63 Identities=13% Similarity=0.168 Sum_probs=47.0
Q ss_pred chhHHHHHHHHHHHHHHcCCeEEEeec-----------cccccccccccceeeeecCCCce------EeecCCceehhh-
Q 019830 239 NESINRLIEEAILEAEEKGARVISLGL-----------LNQGEELNRYGGLFVHKNPELKI------KVVDGSSLAVAV- 300 (335)
Q Consensus 239 ~~~in~~ie~ail~a~~~g~kv~slg~-----------lN~~~~ln~~g~l~v~~~p~l~v------rvv~g~~l~aav- 300 (335)
-+..++.|++++.+.-+.|...|.||= +.+.. .+=|-+.++.|+|++- .-.||+.+..|.
T Consensus 69 ~~~~~~~i~~~v~~~l~~g~~pi~lGGdHsit~~~~~~~~~~~--~~~~vI~~DAH~Dl~~~~~~~sg~~hG~~~~~~~~ 146 (306)
T 1pq3_A 69 VGLANQELAEVVSRAVSDGYSCVTLGGDHSLAIGTISGHARHC--PDLCVVWVDAHADINTPLTTSSGNLHGQPVSFLLR 146 (306)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTTC--TTCEEEEECSSCCCCCTTTCSSCCGGGCHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEcCcccchHhHHHHHHhhC--CCeEEEEEecCcccCCCCCCCCCcccchHHHHHHh
Confidence 567788999999999999999999872 22211 1346788899999986 267788887777
Q ss_pred hhc
Q 019830 301 LTN 303 (335)
Q Consensus 301 vl~ 303 (335)
-.+
T Consensus 147 ~~~ 149 (306)
T 1pq3_A 147 ELQ 149 (306)
T ss_dssp TTG
T ss_pred ccC
Confidence 553
No 22
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A
Probab=23.13 E-value=51 Score=27.46 Aligned_cols=23 Identities=26% Similarity=0.226 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHcCCeEEEeec
Q 019830 243 NRLIEEAILEAEEKGARVISLGL 265 (335)
Q Consensus 243 n~~ie~ail~a~~~g~kv~slg~ 265 (335)
++.+.+++..|.++|+||+++-.
T Consensus 129 t~~~~~~~~~ak~~g~~vI~IT~ 151 (198)
T 2xbl_A 129 SPNILAAFREAKAKGMTCVGFTG 151 (198)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CHHHHHHHHHHHHCCCeEEEEEC
Confidence 46677888999999999998865
No 23
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=22.98 E-value=44 Score=27.53 Aligned_cols=25 Identities=8% Similarity=0.019 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHcCCeEEEeecc
Q 019830 242 INRLIEEAILEAEEKGARVISLGLL 266 (335)
Q Consensus 242 in~~ie~ail~a~~~g~kv~slg~l 266 (335)
=++.+.+++..|.++|+||+++-.-
T Consensus 94 ~t~~~~~~~~~ak~~g~~vi~IT~~ 118 (180)
T 1jeo_A 94 RTESVLTVAKKAKNINNNIIAIVCE 118 (180)
T ss_dssp CCHHHHHHHHHHHTTCSCEEEEESS
T ss_pred CcHHHHHHHHHHHHCCCcEEEEeCC
Confidence 4577888999999999999988653
No 24
>2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli}
Probab=22.84 E-value=96 Score=28.67 Aligned_cols=17 Identities=6% Similarity=-0.144 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHcCC
Q 019830 242 INRLIEEAILEAEEKGA 258 (335)
Q Consensus 242 in~~ie~ail~a~~~g~ 258 (335)
-++.+++||.+|.++|+
T Consensus 159 ~~~~~~~ai~~a~~~gi 175 (347)
T 2iy9_A 159 ASVWTELLSRMGRNNDR 175 (347)
T ss_dssp CHHHHHHHHHHHHHTSC
T ss_pred cCHHHHHHHHHHHhCCe
Confidence 35677788888888776
No 25
>3pl5_A SMU_165, putative uncharacterized protein; fatty acid binding protein, lipid binding protein; HET: PLM; 2.04A {Streptococcus mutans}
Probab=22.81 E-value=41 Score=31.87 Aligned_cols=55 Identities=15% Similarity=0.193 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHcCCeEEEeeccccccc----cccccceeeeecCCCceEeecCCceehh
Q 019830 245 LIEEAILEAEEKGARVISLGLLNQGEE----LNRYGGLFVHKNPELKIKVVDGSSLAVA 299 (335)
Q Consensus 245 ~ie~ail~a~~~g~kv~slg~lN~~~~----ln~~g~l~v~~~p~l~vrvv~g~~l~aa 299 (335)
.++++..+.-+.|-.||++.+..+--. -+-..+.+-.+||+.||+|||-.+..++
T Consensus 103 ~~~~~f~~l~~~g~~Ii~I~iSS~LSGTy~sA~~Aa~~~~e~~~~~~I~ViDS~~~s~g 161 (320)
T 3pl5_A 103 QFESYFRQSAENGQEVLYIAFSSVLSGTYQSAVMARDIVLEEYPQASIEIVDTLAATGG 161 (320)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCTTTCTHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHH
T ss_pred HHHHHHHHHHHCCCeEEEEecCchHhHHHHHHHHHHHHHHhhCCCCeEEEEcCCchHHH
Confidence 355666666677889999988765321 1111123445799999999998876543
No 26
>1z4e_A Transcriptional regulator; nysgxrc target T2017, GNAT fold, structural genomics, PSI, P structure initiative; 2.00A {Bacillus halodurans} SCOP: d.108.1.1
Probab=22.78 E-value=63 Score=24.69 Aligned_cols=34 Identities=26% Similarity=0.269 Sum_probs=24.6
Q ss_pred cCCchhHHHH-HHHHHHHHHHcCCeEEEeeccccc
Q 019830 236 QQPNESINRL-IEEAILEAEEKGARVISLGLLNQG 269 (335)
Q Consensus 236 ~~~~~~in~~-ie~ail~a~~~g~kv~slg~lN~~ 269 (335)
..+..||-+. ++.++..|++.|++.+.|.....|
T Consensus 96 ~~rg~GiG~~Ll~~~~~~a~~~g~~~i~l~v~~~N 130 (153)
T 1z4e_A 96 AARGQGIGSQLVCWAIERAKERGCHLIQLTTDKQR 130 (153)
T ss_dssp TSTTSSHHHHHHHHHHHHHHHTTEEEEEEEEETTC
T ss_pred HHcCCCHHHHHHHHHHHHHHHcCCCEEEEEEccCC
Confidence 3467788655 555666899999999998765444
No 27
>1t57_A Conserved protein MTH1675; structural genomics, FMN; HET: FMN; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.49.1.2
Probab=22.02 E-value=81 Score=28.43 Aligned_cols=76 Identities=17% Similarity=0.205 Sum_probs=48.2
Q ss_pred ceEEEecCC-----ccccccCCchhHHHHHHHHHHHHHHcCCeEEEeecccc------ccccccccceeeeecC------
Q 019830 222 QTWAKSKYN-----MQYFSQQPNESINRLIEEAILEAEEKGARVISLGLLNQ------GEELNRYGGLFVHKNP------ 284 (335)
Q Consensus 222 q~w~~pr~~-----~~y~~~~~~~~in~~ie~ail~a~~~g~kv~slg~lN~------~~~ln~~g~l~v~~~p------ 284 (335)
.+=.+||=+ ..||-...++--++.+|.|+.+|++.|+|-+-++-..- .|.+ .| .|.+--|+
T Consensus 11 ~~~~~~~~~~~~k~i~YF~~~G~eNT~~tl~la~era~e~~Ik~iVVASssG~TA~k~~e~~-~~-~lVvVTh~~GF~~p 88 (206)
T 1t57_A 11 SSGLVPRGSHMEKKICYFEEPGKENTERVLELVGERADQLGIRNFVVASVSGETALRLSEMV-EG-NIVSVTHHAGFREK 88 (206)
T ss_dssp ----------CEEEEEEESSCSGGGHHHHHHHHHHHHHHHTCCEEEEECSSSHHHHHHHTTC-CS-EEEEECCCTTSSST
T ss_pred cCCcccCCccceeeEEEecCCCcccHHHHHHHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHc-cC-CEEEEeCcCCCCCC
Confidence 556678764 48999999999999999999999999999887653311 1233 22 56553332
Q ss_pred --------------CCceEeecCCceehh
Q 019830 285 --------------ELKIKVVDGSSLAVA 299 (335)
Q Consensus 285 --------------~l~vrvv~g~~l~aa 299 (335)
+..+||+.|+-+.+.
T Consensus 89 g~~e~~~e~~~~L~~~G~~V~t~tH~lsG 117 (206)
T 1t57_A 89 GQLELEDEARDALLERGVNVYAGSHALSG 117 (206)
T ss_dssp TCCSSCHHHHHHHHHHTCEEECCSCTTTT
T ss_pred CCCcCCHHHHHHHHhCCCEEEEeeccccc
Confidence 456888888777544
No 28
>1xmt_A Putative acetyltransferase; structural genomics, protein structure initiative, CESG, AT1G77540, center for eukaryotic structural genomics; 1.15A {Arabidopsis thaliana} SCOP: d.108.1.1 PDB: 2q44_A 2evn_A 2il4_A* 2q4y_A*
Probab=21.86 E-value=65 Score=24.76 Aligned_cols=27 Identities=15% Similarity=0.106 Sum_probs=20.5
Q ss_pred CchhHH-HHHHHHHHHHHHcCCeEEEee
Q 019830 238 PNESIN-RLIEEAILEAEEKGARVISLG 264 (335)
Q Consensus 238 ~~~~in-~~ie~ail~a~~~g~kv~slg 264 (335)
+..+|- ++++.++..|.+.|++++.+.
T Consensus 49 rg~GiG~~Ll~~~~~~a~~~g~~~i~l~ 76 (103)
T 1xmt_A 49 RGLGLASHLCVAAFEHASSHSISIIPSC 76 (103)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCEEEECS
T ss_pred cCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 556665 566777778999999999764
No 29
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=21.44 E-value=55 Score=27.05 Aligned_cols=25 Identities=24% Similarity=0.170 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHcCCeEEEeecc
Q 019830 242 INRLIEEAILEAEEKGARVISLGLL 266 (335)
Q Consensus 242 in~~ie~ail~a~~~g~kv~slg~l 266 (335)
=++.+.+++..|.++|+||+++-.-
T Consensus 99 ~t~~~~~~~~~ak~~g~~vi~IT~~ 123 (187)
T 3sho_A 99 YLRDTVAALAGAAERGVPTMALTDS 123 (187)
T ss_dssp CCHHHHHHHHHHHHTTCCEEEEESC
T ss_pred CCHHHHHHHHHHHHCCCCEEEEeCC
Confidence 4567888899999999999998753
No 30
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=21.21 E-value=55 Score=27.86 Aligned_cols=27 Identities=7% Similarity=0.119 Sum_probs=22.2
Q ss_pred hhHHHHHHHHHHHHHHcCCeEEEeecc
Q 019830 240 ESINRLIEEAILEAEEKGARVISLGLL 266 (335)
Q Consensus 240 ~~in~~ie~ail~a~~~g~kv~slg~l 266 (335)
.+=++.+.+++..|.++|+||+++-.-
T Consensus 99 SG~t~~~i~~~~~ak~~g~~vI~IT~~ 125 (200)
T 1vim_A 99 SGETTSVVNISKKAKDIGSKLVAVTGK 125 (200)
T ss_dssp SSCCHHHHHHHHHHHHHTCEEEEEESC
T ss_pred CCCcHHHHHHHHHHHHCCCeEEEEECC
Confidence 345777888999999999999988653
No 31
>3qks_C DNA double-strand break repair protein MRE11; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_C* 3qku_C*
Probab=20.91 E-value=13 Score=24.36 Aligned_cols=24 Identities=17% Similarity=0.206 Sum_probs=12.3
Q ss_pred cccccCCchhHHHHHHHHHHHHHH
Q 019830 232 QYFSQQPNESINRLIEEAILEAEE 255 (335)
Q Consensus 232 ~y~~~~~~~~in~~ie~ail~a~~ 255 (335)
.||.|.+.+.||.+=|++|-+-|+
T Consensus 2 e~Ft~~ElKiI~l~Gek~~e~~d~ 25 (34)
T 3qks_C 2 DFFTEFELKIIDILGEKDFDDFDY 25 (34)
T ss_dssp ----CHHHHHHHHC------CHHH
T ss_pred ccccHHHHHHHHHHccchHHHHHH
Confidence 589999999999999999987664
No 32
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=20.41 E-value=53 Score=27.04 Aligned_cols=25 Identities=12% Similarity=-0.032 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHHcCCeEEEeec
Q 019830 241 SINRLIEEAILEAEEKGARVISLGL 265 (335)
Q Consensus 241 ~in~~ie~ail~a~~~g~kv~slg~ 265 (335)
|=++.+.+++..|.++|+||+++-.
T Consensus 107 G~t~~~~~~~~~ak~~g~~vi~IT~ 131 (183)
T 2xhz_A 107 GESSEITALIPVLKRLHVPLICITG 131 (183)
T ss_dssp SCCHHHHHHHHHHHTTTCCEEEEES
T ss_pred CCCHHHHHHHHHHHHCCCCEEEEEC
Confidence 4567788899999999999999865
No 33
>3lup_A DEGV family protein; PSI-2, MCSG, structural genomics, fatty acid binding, protei structure initiative; HET: ELA; 2.65A {Streptococcus agalactiae} SCOP: c.119.1.0
Probab=20.31 E-value=53 Score=30.28 Aligned_cols=55 Identities=15% Similarity=0.227 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHcCC-eEEEeeccccccccccccceeeeecCCCceEeecCCceehh
Q 019830 245 LIEEAILEAEEKGA-RVISLGLLNQGEELNRYGGLFVHKNPELKIKVVDGSSLAVA 299 (335)
Q Consensus 245 ~ie~ail~a~~~g~-kv~slg~lN~~~~ln~~g~l~v~~~p~l~vrvv~g~~l~aa 299 (335)
.++++..+.-+.|- .||++.+.-+--.--..-.+.-+.+|+.+|+|||-.+..++
T Consensus 71 ~~~~~f~~l~~~g~d~ii~i~iSs~LSGTy~sA~~a~~~~~~~~I~ViDS~~~s~g 126 (285)
T 3lup_A 71 ELDDLLCQLEKEGYTHVLGLFIAAGISGFWQNIQFLIEEHPNLTIAFPDTKITSAP 126 (285)
T ss_dssp HHHHHHHHHHHTTCCEEEECCSCGGGCTHHHHHTTHHHHCTTSEEECCCCCCCHHH
T ss_pred HHHHHHHHHHHcCCCeEEEEeCCCchhHHHHHHHHHHHhCCCCCEEEEcCCchHHH
Confidence 45666677777786 69999887653222222233446789999999998876543
Done!