BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019834
(335 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224133800|ref|XP_002321664.1| predicted protein [Populus trichocarpa]
gi|222868660|gb|EEF05791.1| predicted protein [Populus trichocarpa]
Length = 366
Score = 533 bits (1373), Expect = e-149, Method: Compositional matrix adjust.
Identities = 266/363 (73%), Positives = 295/363 (81%), Gaps = 38/363 (10%)
Query: 1 MKRFFKPIEKECSAKKPALSPSKKDGETTE------TSSEENS-KKDPLKFVTWNANSLL 53
MKRFFKPIEK+ SAKKP LS +++D E E T++ N+ KK+PLKF+TWNANSLL
Sbjct: 1 MKRFFKPIEKDGSAKKPTLSTNQEDNEKKEASESEETNNNGNTMKKEPLKFITWNANSLL 60
Query: 54 LRVKNNWPEFSNFITTFDPDVIALQ-------------------------------ILMR 82
LRVKNNWP FS F++ DPDVI +Q ILMR
Sbjct: 61 LRVKNNWPGFSKFVSDIDPDVIVIQEVRMPAAGSKGAPKNSGEIKDDTNSSREEKKILMR 120
Query: 83 ALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFE 142
ALSS PF NY +WWSLADSKYAGTALLVKKCFQP KVSF+L++TA K+EPDGRVILAEF+
Sbjct: 121 ALSSSPFGNYNVWWSLADSKYAGTALLVKKCFQPVKVSFALDQTASKHEPDGRVILAEFK 180
Query: 143 TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSH 202
TF LLNTYAPNNGWKEEE SFQRRRKWDKR+ E V+Q S KPLIWCGDLNVSHEEIDVSH
Sbjct: 181 TFRLLNTYAPNNGWKEEEKSFQRRRKWDKRMLEVVVQLSDKPLIWCGDLNVSHEEIDVSH 240
Query: 203 PEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS 262
PEFF+AAK+NGYVPPNKED GQPGFT++ERKRFGAILKEG+LIDAYRFLHKE+DM+ GFS
Sbjct: 241 PEFFSAAKVNGYVPPNKEDCGQPGFTLSERKRFGAILKEGKLIDAYRFLHKERDMERGFS 300
Query: 263 WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEAS 322
WSGNPIGKYRGKRMRID+FIVSE+LKDRII CEM GHGIELEGFYGSDHCPVSLELS AS
Sbjct: 301 WSGNPIGKYRGKRMRIDFFIVSEKLKDRIIQCEMHGHGIELEGFYGSDHCPVSLELSPAS 360
Query: 323 SDS 325
DS
Sbjct: 361 PDS 363
>gi|297816036|ref|XP_002875901.1| hypothetical protein ARALYDRAFT_347932 [Arabidopsis lyrata subsp.
lyrata]
gi|297321739|gb|EFH52160.1| hypothetical protein ARALYDRAFT_347932 [Arabidopsis lyrata subsp.
lyrata]
Length = 684
Score = 526 bits (1354), Expect = e-147, Method: Compositional matrix adjust.
Identities = 256/365 (70%), Positives = 295/365 (80%), Gaps = 34/365 (9%)
Query: 1 MKRFFKPIEKECS--AKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKN 58
MKRFFKPIEKE S AKKP LSP K++G+ + EE ++K+P KFVTWNANS LLRVKN
Sbjct: 321 MKRFFKPIEKEGSTAAKKPCLSPEKREGDG-DGVEEEKNQKEPSKFVTWNANSFLLRVKN 379
Query: 59 NWPEFSNFITTFDPDVIALQ-------------------------------ILMRALSSP 87
+W +FS F++ FDPDVIA+Q IL RALSSP
Sbjct: 380 DWSQFSKFVSDFDPDVIAVQEVRMPAAGGKGKPKNPEELSDDTKVLREEKQILTRALSSP 439
Query: 88 PFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 147
PF NY++WWSLADSKYAGTALLVKKCF+PKKV F+L+K A K+EPDGRVILAEFETF LL
Sbjct: 440 PFGNYRVWWSLADSKYAGTALLVKKCFKPKKVYFNLDKLASKHEPDGRVILAEFETFRLL 499
Query: 148 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFA 207
NTY+PNNGWKEEENSFQRRRKWDKRI EF+ + S KPLIWCGDLNVSHEEIDVSHPEFFA
Sbjct: 500 NTYSPNNGWKEEENSFQRRRKWDKRIVEFLNKTSDKPLIWCGDLNVSHEEIDVSHPEFFA 559
Query: 208 AAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNP 267
AKLNGYVPPNKED GQPGFT +ER+RFG +KEG L+DAYR+LHKE+DM+ GFSWSGNP
Sbjct: 560 TAKLNGYVPPNKEDCGQPGFTPSERRRFGETMKEGMLVDAYRYLHKEQDMESGFSWSGNP 619
Query: 268 IGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEASSDSEK 327
IGKYRGKRMRIDYF+VSE+LKDRI++C+M G GIELEGFYGSDHCPV+LELS+ SS++E+
Sbjct: 620 IGKYRGKRMRIDYFLVSEQLKDRIVSCKMHGRGIELEGFYGSDHCPVTLELSKPSSETEQ 679
Query: 328 REKKN 332
+ N
Sbjct: 680 NQVSN 684
>gi|449487730|ref|XP_004157772.1| PREDICTED: LOW QUALITY PROTEIN: DNA-(apurinic or apyrimidinic site)
lyase-like [Cucumis sativus]
Length = 361
Score = 525 bits (1353), Expect = e-146, Method: Compositional matrix adjust.
Identities = 253/354 (71%), Positives = 288/354 (81%), Gaps = 31/354 (8%)
Query: 1 MKRFFKPIEKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNW 60
MKRFFKPIEKE S+KK ALSPS KDG+ ++ + KK+PLKFVTWNANSLLLRVKN+W
Sbjct: 1 MKRFFKPIEKEGSSKKVALSPSLKDGDDGDSEASVPDKKEPLKFVTWNANSLLLRVKNDW 60
Query: 61 PEFSNFITTFDPDVIALQ-------------------------------ILMRALSSPPF 89
EF+ F+T DPD IA+Q +LMRALSSPPF
Sbjct: 61 SEFTKFVTNLDPDAIAIQEVRIPAAGSKGASKNQGELKDDTNTSREEKQMLMRALSSPPF 120
Query: 90 KNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNT 149
NY++WWSL+DSKYAGTAL +KKCFQPKKV F+L++ A K+E DGRVILAEFETF LLNT
Sbjct: 121 ANYRVWWSLSDSKYAGTALFIKKCFQPKKVXFNLDRIASKHEVDGRVILAEFETFRLLNT 180
Query: 150 YAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAA 209
Y+PNNGWKEEE SF+RRRKWDKR+ EFV+Q S KPLIWCGDLNVSHEEIDVSHP+FF+AA
Sbjct: 181 YSPNNGWKEEEKSFKRRRKWDKRMLEFVIQSSDKPLIWCGDLNVSHEEIDVSHPDFFSAA 240
Query: 210 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 269
KLNGY+PPNKED GQPGFT+AER RF AILKEG+LIDA+RFLHKEKDM+ GFSWSG+PIG
Sbjct: 241 KLNGYIPPNKEDCGQPGFTLAERNRFNAILKEGKLIDAHRFLHKEKDMERGFSWSGHPIG 300
Query: 270 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEASS 323
KYRGKRMRIDYF+VSE L RI++CEM G GIEL+GFYGSDHCPVSLELSEASS
Sbjct: 301 KYRGKRMRIDYFLVSESLVGRIVSCEMHGQGIELKGFYGSDHCPVSLELSEASS 354
>gi|449469598|ref|XP_004152506.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like [Cucumis
sativus]
Length = 361
Score = 524 bits (1350), Expect = e-146, Method: Compositional matrix adjust.
Identities = 253/354 (71%), Positives = 288/354 (81%), Gaps = 31/354 (8%)
Query: 1 MKRFFKPIEKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNW 60
MKRFFKPIEKE S+KK ALSPS KDG+ ++ + KK+PLKFVTWNANSLLLRVKN+W
Sbjct: 1 MKRFFKPIEKEGSSKKVALSPSLKDGDDGDSEASVPDKKEPLKFVTWNANSLLLRVKNDW 60
Query: 61 PEFSNFITTFDPDVIALQ-------------------------------ILMRALSSPPF 89
EF+ F+T DPD IA+Q +LMRALSSPPF
Sbjct: 61 SEFTKFVTNLDPDAIAIQEVRIPAAGSKGASKNQGELKDDTNTSREEKQMLMRALSSPPF 120
Query: 90 KNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNT 149
NY++WWSL+DSKYAGTAL +KKCFQPKKV F+L++ A K+E DGRVILAEFETF LLNT
Sbjct: 121 ANYRVWWSLSDSKYAGTALFIKKCFQPKKVFFNLDRIASKHEVDGRVILAEFETFRLLNT 180
Query: 150 YAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAA 209
Y+PNNGWKEEE SF+RRRKWDKR+ EFV+Q S KPLIWCGDLNVSHEEIDVSHP+FF+AA
Sbjct: 181 YSPNNGWKEEEKSFKRRRKWDKRMLEFVIQSSDKPLIWCGDLNVSHEEIDVSHPDFFSAA 240
Query: 210 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 269
KLNGY+PPNKED GQPGFT+AER RF AILKEG+LIDA+RFLHKEKDM+ GFSWSG+PIG
Sbjct: 241 KLNGYIPPNKEDCGQPGFTLAERNRFNAILKEGKLIDAHRFLHKEKDMERGFSWSGHPIG 300
Query: 270 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEASS 323
KYRGKRMRIDYF+VSE L RI++CEM G GIEL+GFYGSDHCPVSLELSEASS
Sbjct: 301 KYRGKRMRIDYFLVSESLVGRIVSCEMHGQGIELKGFYGSDHCPVSLELSEASS 354
>gi|225456791|ref|XP_002277389.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Vitis
vinifera]
gi|297733638|emb|CBI14885.3| unnamed protein product [Vitis vinifera]
Length = 357
Score = 522 bits (1344), Expect = e-145, Method: Compositional matrix adjust.
Identities = 252/358 (70%), Positives = 286/358 (79%), Gaps = 33/358 (9%)
Query: 1 MKRFFKPIEKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNW 60
MKR+F+PI K+ S+KKP+LS D T + S EE KK+PLKF+TWNANS L+RVKNNW
Sbjct: 1 MKRYFQPIGKDGSSKKPSLSKEDGDENTDQVSEEE--KKEPLKFLTWNANSFLIRVKNNW 58
Query: 61 PEFSNFITTFDPDVIALQ-------------------------------ILMRALSSPPF 89
PEF+ F++ DPDVIA+Q ILM ALS PPF
Sbjct: 59 PEFTKFVSDLDPDVIAVQEVRMPAAGSKGAPKNHGELKDDTSSSREEKKILMHALSRPPF 118
Query: 90 KNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNT 149
NY++WWSLADSKYAGTAL VKKCFQPKKVSFS+++ A K+EP+GRVILAEFE+F LLNT
Sbjct: 119 GNYRVWWSLADSKYAGTALFVKKCFQPKKVSFSIDQKASKHEPEGRVILAEFESFRLLNT 178
Query: 150 YAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAA 209
Y PNNGWK+EE SFQRRRKWDKR+ EFV+Q S KPLIWCGDLNVSHEEIDVSHPEFF+AA
Sbjct: 179 YVPNNGWKDEETSFQRRRKWDKRMLEFVVQSSDKPLIWCGDLNVSHEEIDVSHPEFFSAA 238
Query: 210 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 269
K NGYVPPNKED GQPGFT+AER+RFG ILKEG+L+DAYR LHKEKDM+ GFSWSGNPIG
Sbjct: 239 KHNGYVPPNKEDCGQPGFTLAERRRFGGILKEGKLVDAYRLLHKEKDMEGGFSWSGNPIG 298
Query: 270 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEASSDSEK 327
KYRGKRMRIDYFIV E LKDRI+ACE+ G GIEL+GFYGSDHCPVSLELSE SS S +
Sbjct: 299 KYRGKRMRIDYFIVPEALKDRIVACEIHGQGIELKGFYGSDHCPVSLELSETSSGSNQ 356
>gi|4678346|emb|CAB41156.1| putative protein [Arabidopsis thaliana]
Length = 686
Score = 519 bits (1336), Expect = e-145, Method: Compositional matrix adjust.
Identities = 252/365 (69%), Positives = 293/365 (80%), Gaps = 34/365 (9%)
Query: 1 MKRFFKPIEKECS--AKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKN 58
MKRFFKPIEKE S AKKP LSP K+DG+ + EE ++ +P KF+TWNANS LLRVKN
Sbjct: 323 MKRFFKPIEKENSPAAKKPCLSPEKRDGDG-DGVEEEKNQNEPSKFMTWNANSFLLRVKN 381
Query: 59 NWPEFSNFITTFDPDVIALQ-------------------------------ILMRALSSP 87
+W +FS F++ FDPDVIA+Q IL RALSSP
Sbjct: 382 DWSQFSKFVSDFDPDVIAIQEVRMPAAGGKGKPKNHEELSDDTKVLREEKQILTRALSSP 441
Query: 88 PFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 147
PF NY +WWSLADSKYAGTALLVKKCF+P+KV F+L+K A K+EPDGRVILAEFETF LL
Sbjct: 442 PFGNYGVWWSLADSKYAGTALLVKKCFKPRKVYFNLDKLASKHEPDGRVILAEFETFRLL 501
Query: 148 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFA 207
NTY+PNNGWK+EEN+FQRRRKWDKRI EF+ + S KPLIWCGDLNVSHEEIDVSHPEFFA
Sbjct: 502 NTYSPNNGWKDEENAFQRRRKWDKRIVEFLNKTSDKPLIWCGDLNVSHEEIDVSHPEFFA 561
Query: 208 AAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNP 267
AKLNGYVPPNKED GQPGFT +ER RFGA +KEGRL+DAYR+LHKE++M+ GFSWSGNP
Sbjct: 562 TAKLNGYVPPNKEDCGQPGFTPSERGRFGATIKEGRLVDAYRYLHKEQEMESGFSWSGNP 621
Query: 268 IGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEASSDSEK 327
IGKYRGKRMRIDYF+VSE+LKDRI++C+M G GIELEGF+GSDHCPV+LELS+ SS+ E+
Sbjct: 622 IGKYRGKRMRIDYFLVSEQLKDRIVSCKMHGRGIELEGFHGSDHCPVTLELSKPSSEMEQ 681
Query: 328 REKKN 332
+ N
Sbjct: 682 NQVSN 686
>gi|42565714|ref|NP_566904.2| endonuclease/exonuclease/phosphatase domain-containing protein
[Arabidopsis thaliana]
gi|53828525|gb|AAU94372.1| At3g48425 [Arabidopsis thaliana]
gi|55733769|gb|AAV59281.1| At3g48425 [Arabidopsis thaliana]
gi|332644894|gb|AEE78415.1| endonuclease/exonuclease/phosphatase domain-containing protein
[Arabidopsis thaliana]
Length = 364
Score = 516 bits (1330), Expect = e-144, Method: Compositional matrix adjust.
Identities = 252/365 (69%), Positives = 293/365 (80%), Gaps = 34/365 (9%)
Query: 1 MKRFFKPIEKECS--AKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKN 58
MKRFFKPIEKE S AKKP LSP K+DG+ + EE ++ +P KF+TWNANS LLRVKN
Sbjct: 1 MKRFFKPIEKENSPAAKKPCLSPEKRDGDG-DGVEEEKNQNEPSKFMTWNANSFLLRVKN 59
Query: 59 NWPEFSNFITTFDPDVIALQ-------------------------------ILMRALSSP 87
+W +FS F++ FDPDVIA+Q IL RALSSP
Sbjct: 60 DWSQFSKFVSDFDPDVIAIQEVRMPAAGGKGKPKNHEELSDDTKVLREEKQILTRALSSP 119
Query: 88 PFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 147
PF NY +WWSLADSKYAGTALLVKKCF+P+KV F+L+K A K+EPDGRVILAEFETF LL
Sbjct: 120 PFGNYGVWWSLADSKYAGTALLVKKCFKPRKVYFNLDKLASKHEPDGRVILAEFETFRLL 179
Query: 148 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFA 207
NTY+PNNGWK+EEN+FQRRRKWDKRI EF+ + S KPLIWCGDLNVSHEEIDVSHPEFFA
Sbjct: 180 NTYSPNNGWKDEENAFQRRRKWDKRIVEFLNKTSDKPLIWCGDLNVSHEEIDVSHPEFFA 239
Query: 208 AAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNP 267
AKLNGYVPPNKED GQPGFT +ER RFGA +KEGRL+DAYR+LHKE++M+ GFSWSGNP
Sbjct: 240 TAKLNGYVPPNKEDCGQPGFTPSERGRFGATIKEGRLVDAYRYLHKEQEMESGFSWSGNP 299
Query: 268 IGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEASSDSEK 327
IGKYRGKRMRIDYF+VSE+LKDRI++C+M G GIELEGF+GSDHCPV+LELS+ SS+ E+
Sbjct: 300 IGKYRGKRMRIDYFLVSEQLKDRIVSCKMHGRGIELEGFHGSDHCPVTLELSKPSSEMEQ 359
Query: 328 REKKN 332
+ N
Sbjct: 360 NQVSN 364
>gi|356508768|ref|XP_003523126.1| PREDICTED: exodeoxyribonuclease-like [Glycine max]
Length = 355
Score = 507 bits (1305), Expect = e-141, Method: Compositional matrix adjust.
Identities = 245/356 (68%), Positives = 280/356 (78%), Gaps = 41/356 (11%)
Query: 1 MKRFFKPIEKEC--SAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKN 58
MKRFFK +EK+ S KKP E + E N KK+PLKF+TWNANS LLRVKN
Sbjct: 1 MKRFFKVVEKDSDGSVKKPR--------ENDSEAEESNEKKEPLKFMTWNANSFLLRVKN 52
Query: 59 NWPEFSNFITTFDPDVIALQ-------------------------------ILMRALSSP 87
NWP+F+N ITTFDPD+IA+Q IL RALS+P
Sbjct: 53 NWPDFTNLITTFDPDLIAIQEVRMPAAGAKGASKIQGEIKDDTSAAREEKKILTRALSAP 112
Query: 88 PFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 147
PF NY +WWSLADSKYAGTALLVKKCF+PK V F+L+K A K+EPDGRVIL EFET LL
Sbjct: 113 PFGNYHVWWSLADSKYAGTALLVKKCFKPKSVVFNLDKLASKHEPDGRVILVEFETLRLL 172
Query: 148 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFA 207
NTY PNNGWKEE NSFQRRRKWDKRI EFV Q S KPLIWCGDLNVSHEEIDVSHP+FF+
Sbjct: 173 NTYVPNNGWKEEANSFQRRRKWDKRILEFVTQSSDKPLIWCGDLNVSHEEIDVSHPDFFS 232
Query: 208 AAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNP 267
AKLNGY+PPNKED GQPGFT++ERKRFG IL+EG+L+DAYRFLH++KDM+ GFSWSGNP
Sbjct: 233 VAKLNGYIPPNKEDCGQPGFTLSERKRFGTILREGKLVDAYRFLHEDKDMERGFSWSGNP 292
Query: 268 IGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEASS 323
+G+YRGKRMRIDYF+VSE+LK+RI ACEM+GHGIELEGFYGSDHCPV+LELS +S+
Sbjct: 293 VGRYRGKRMRIDYFLVSEKLKERIAACEMRGHGIELEGFYGSDHCPVTLELSPSSN 348
>gi|358348989|ref|XP_003638523.1| DNA-(apurinic or apyrimidinic site) lyase [Medicago truncatula]
gi|355504458|gb|AES85661.1| DNA-(apurinic or apyrimidinic site) lyase [Medicago truncatula]
Length = 367
Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust.
Identities = 247/362 (68%), Positives = 281/362 (77%), Gaps = 41/362 (11%)
Query: 1 MKRFFKPIEKE---CSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVK 57
MKRFFK IEK+ CS K ++ + + + EE +KK+PLKF+TWNANSLLLRVK
Sbjct: 1 MKRFFKVIEKDSEKCSKKPKENENEEEKKQ--DENEEEATKKEPLKFMTWNANSLLLRVK 58
Query: 58 NNWPEFSNFITTFDPDVIALQ------------------------------------ILM 81
NNW EFSNFITTFDPDVIA+Q ILM
Sbjct: 59 NNWSEFSNFITTFDPDVIAIQEVRMPAASSSSSNSKSAPKNQAEVKDDTNAAREEKRILM 118
Query: 82 RALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEF 141
RALS+PPF NY +WWSLA+SKYAGTAL VKKCF+PK V F+L+K A K+EPDGRVIL EF
Sbjct: 119 RALSNPPFGNYHVWWSLAESKYAGTALFVKKCFKPKSVVFNLDKIASKHEPDGRVILVEF 178
Query: 142 ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVS 201
ET LLNTY PNNGWKEE NSFQRRRKWDKRI EFV Q S KPLIWCGDLNVSHEEIDVS
Sbjct: 179 ETLRLLNTYVPNNGWKEEPNSFQRRRKWDKRILEFVNQNSDKPLIWCGDLNVSHEEIDVS 238
Query: 202 HPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGF 261
PEFF+ AKLNGYVPPNKED+GQPGFT+AER RFG IL+EG+L+DAYRFLHK+KDM+ GF
Sbjct: 239 QPEFFSTAKLNGYVPPNKEDYGQPGFTLAERARFGTILREGKLVDAYRFLHKDKDMEQGF 298
Query: 262 SWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEA 321
SWSGNPIG+YRGKRMRIDYFIVSE++K++I ACEM G GIEL+GFYGSDHCPV+LELS +
Sbjct: 299 SWSGNPIGRYRGKRMRIDYFIVSEKIKEKIAACEMHGKGIELQGFYGSDHCPVTLELSPS 358
Query: 322 SS 323
S+
Sbjct: 359 SN 360
>gi|46200513|gb|AAL73527.2|AF466200_6 putative AP endonuclease [Sorghum bicolor]
Length = 348
Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust.
Identities = 226/349 (64%), Positives = 279/349 (79%), Gaps = 20/349 (5%)
Query: 1 MKRFFKPIEKECS--------AKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSL 52
MKRFF+P+ K+ S A +P P+ G T E ++P KF+TWNANSL
Sbjct: 1 MKRFFQPVAKDGSPSKKRQAAAAEPEGGPASA-GAATGGDGEGRPAEEPRKFLTWNANSL 59
Query: 53 LLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPFKNYQIWWSLADSKYAGTALLVKK 112
LLR+K++WP FS + DPDVI +Q+++RALS+ PFK+Y++WWSL+DSKYAGTA+ +KK
Sbjct: 60 LLRMKSDWPAFSQLVARLDPDVICVQVVLRALSTSPFKDYRVWWSLSDSKYAGTAMFIKK 119
Query: 113 CFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKR 172
F+PKKVSF+L++T+ K+E DGRVI+AEFE+F LLNTYAPNNGWKEEENSFQRRRKWDKR
Sbjct: 120 KFEPKKVSFNLDRTSSKHETDGRVIIAEFESFLLLNTYAPNNGWKEEENSFQRRRKWDKR 179
Query: 173 IQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAER 232
+ EFV Q KPLIWCGDLNVSHEEIDVSHP+FF++AKLNGY PPN+ED GQPGFT AER
Sbjct: 180 MLEFV-QHVDKPLIWCGDLNVSHEEIDVSHPDFFSSAKLNGYTPPNQEDCGQPGFTPAER 238
Query: 233 KRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG----------KYRGKRMRIDYFI 282
+RFG IL +G+L+DAYR LHKEKDMD GFSWSG+PIG +YRGKRMRIDYF+
Sbjct: 239 RRFGNILFQGKLVDAYRHLHKEKDMDGGFSWSGHPIGNEINFSAYSSRYRGKRMRIDYFL 298
Query: 283 VSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEASSDSEKREKK 331
VSE+LKDRI++CEM G GIEL+GFYGSDHCPV+LELS+A +++ + K
Sbjct: 299 VSEQLKDRIVSCEMHGRGIELDGFYGSDHCPVTLELSKAVAEAAPEQPK 347
>gi|115488172|ref|NP_001066573.1| Os12g0279600 [Oryza sativa Japonica Group]
gi|77554323|gb|ABA97119.1| exodeoxyribonuclease III family protein, expressed [Oryza sativa
Japonica Group]
gi|113649080|dbj|BAF29592.1| Os12g0279600 [Oryza sativa Japonica Group]
gi|215687325|dbj|BAG91875.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222616909|gb|EEE53041.1| hypothetical protein OsJ_35763 [Oryza sativa Japonica Group]
Length = 379
Score = 469 bits (1208), Expect = e-130, Method: Compositional matrix adjust.
Identities = 229/373 (61%), Positives = 284/373 (76%), Gaps = 58/373 (15%)
Query: 1 MKRFFKPIEKECSA--KKPALSPSKK--------------------DGETTETSSEENSK 38
MKRFF+P+ K+ S K+PA + + +G++ EE
Sbjct: 1 MKRFFQPVPKDGSPAKKRPAAAAAASASDSDSLGGDAPAAAACAVGEGDSPPAPREE--- 57
Query: 39 KDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ-------------------- 78
+P +FVTWNANSLLLR+K++WP F F++ DPDVI +Q
Sbjct: 58 -EPRRFVTWNANSLLLRMKSDWPAFCQFVSRVDPDVICVQEVRMPAAGSKGAPKNPGQLK 116
Query: 79 -----------ILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTA 127
+++RALSSPPFK+Y++WWSL+DSKYAGTA+++KK F+PKKVSF+L++T+
Sbjct: 117 DDTSSSRDEKQVVLRALSSPPFKDYRVWWSLSDSKYAGTAMIIKKKFEPKKVSFNLDRTS 176
Query: 128 LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIW 187
K+EPDGRVI+AEFE+F LLNTYAPNNGWKEEENSFQRRRKWDKR+ EFV Q KPLIW
Sbjct: 177 SKHEPDGRVIIAEFESFLLLNTYAPNNGWKEEENSFQRRRKWDKRMLEFVQQVD-KPLIW 235
Query: 188 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 247
CGDLNVSHEEIDVSHP+FF++AKLNGY+PPNKED GQPGFT++ER+RFG IL +G+L+DA
Sbjct: 236 CGDLNVSHEEIDVSHPDFFSSAKLNGYIPPNKEDCGQPGFTLSERRRFGNILSQGKLVDA 295
Query: 248 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 307
YR+LHKEKDMDCGFSWSG+PIGKYRGKRMRIDYF+VSE+LKD+I++C++ G GIELEGFY
Sbjct: 296 YRYLHKEKDMDCGFSWSGHPIGKYRGKRMRIDYFLVSEKLKDQIVSCDIHGRGIELEGFY 355
Query: 308 GSDHCPVSLELSE 320
GSDHCPVSLELSE
Sbjct: 356 GSDHCPVSLELSE 368
>gi|242078097|ref|XP_002443817.1| hypothetical protein SORBIDRAFT_07g002730 [Sorghum bicolor]
gi|241940167|gb|EES13312.1| hypothetical protein SORBIDRAFT_07g002730 [Sorghum bicolor]
Length = 369
Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust.
Identities = 227/370 (61%), Positives = 279/370 (75%), Gaps = 41/370 (11%)
Query: 1 MKRFFKPIEKECS--------AKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSL 52
MKRFF+P+ K+ S A +P P+ G T E ++P KF+TWNANSL
Sbjct: 1 MKRFFQPVAKDGSPSKKRQAAAAEPEGGPASA-GAATGGDGEGRPAEEPRKFLTWNANSL 59
Query: 53 LLRVKNNWPEFSNFITTFDPDVIALQ-------------------------------ILM 81
LLR+K++WP FS + DPDVI +Q +++
Sbjct: 60 LLRMKSDWPAFSQLVARLDPDVICVQEVRMPAAGSKGAPKNPSELKDDTSSSRDEKQVVL 119
Query: 82 RALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEF 141
RALS+ PFK+Y++WWSL+DSKYAGTA+ +KK F+PKKVSF+L++T+ K+E DGRVI+AEF
Sbjct: 120 RALSTSPFKDYRVWWSLSDSKYAGTAMFIKKKFEPKKVSFNLDRTSSKHETDGRVIIAEF 179
Query: 142 ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVS 201
E+F LLNTYAPNNGWKEEENSFQRRRKWDKR+ EFV Q KPLIWCGDLNVSHEEIDVS
Sbjct: 180 ESFLLLNTYAPNNGWKEEENSFQRRRKWDKRMLEFV-QHVDKPLIWCGDLNVSHEEIDVS 238
Query: 202 HPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGF 261
HP+FF++AKLNGY PPN+ED GQPGFT AER+RFG IL +G+L+DAYR LHKEKDMD GF
Sbjct: 239 HPDFFSSAKLNGYTPPNQEDCGQPGFTPAERRRFGNILFQGKLVDAYRHLHKEKDMDGGF 298
Query: 262 SWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEA 321
SWSG+PIGKYRGKRMRIDYF+VSE+LKDRI++CEM G GIEL+GFYGSDHCPV+LELS+A
Sbjct: 299 SWSGHPIGKYRGKRMRIDYFLVSEQLKDRIVSCEMHGRGIELDGFYGSDHCPVTLELSKA 358
Query: 322 SSDSEKREKK 331
+++ + K
Sbjct: 359 VAEAAPEQPK 368
>gi|357160291|ref|XP_003578718.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like
[Brachypodium distachyon]
Length = 369
Score = 467 bits (1201), Expect = e-129, Method: Compositional matrix adjust.
Identities = 226/363 (62%), Positives = 273/363 (75%), Gaps = 39/363 (10%)
Query: 1 MKRFFKPIEKECSAKKPALSP-------SKKDGETTETSSEENSKKDPLKFVTWNANSLL 53
MKRFF+P+ KE S K S E ++P +F+TWNANSLL
Sbjct: 1 MKRFFQPVPKEGSPAKRRPSEVVASDCVDGPAATAAGAGGEGAPGQEPRRFMTWNANSLL 60
Query: 54 LRVKNNWPEFSNFITTFDPDVIALQ-------------------------------ILMR 82
LR+K++WP F F++ DPDVI +Q I++R
Sbjct: 61 LRMKSDWPAFCQFVSRLDPDVICVQEVRMPAAGSKGAPKNPSELKDDTSSSREEKQIVLR 120
Query: 83 ALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFE 142
ALSS PFK+Y++WWSL+DSKYAGTA+ VKK F+PKKVSF+L++T+ K+E DGRVI+ EFE
Sbjct: 121 ALSSSPFKDYRVWWSLSDSKYAGTAVFVKKMFEPKKVSFNLDRTSSKHESDGRVIIVEFE 180
Query: 143 TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSH 202
+ LLNTYAPNNGWKEEENSFQRRRKWDKR+ EFV Q KP IWCGDLNVSHEEIDVSH
Sbjct: 181 SLLLLNTYAPNNGWKEEENSFQRRRKWDKRMFEFVQQVD-KPFIWCGDLNVSHEEIDVSH 239
Query: 203 PEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS 262
P+FF++AKLNGY+PPNKED GQPGFT+AER+RFG IL +G+L+DAYR LHKEKDM+CGFS
Sbjct: 240 PDFFSSAKLNGYIPPNKEDCGQPGFTLAERQRFGNILSQGKLVDAYRHLHKEKDMECGFS 299
Query: 263 WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEAS 322
WSGNPIGKYRGKRMRIDYFIVSE LKDR+++CE+ GHGIELEGFYGSDHCPVSLELS+ +
Sbjct: 300 WSGNPIGKYRGKRMRIDYFIVSERLKDRLVSCEIHGHGIELEGFYGSDHCPVSLELSKDA 359
Query: 323 SDS 325
+++
Sbjct: 360 AEA 362
>gi|226531290|ref|NP_001144669.1| uncharacterized protein LOC100277695 [Zea mays]
gi|195645474|gb|ACG42205.1| hypothetical protein [Zea mays]
gi|238007716|gb|ACR34893.1| unknown [Zea mays]
gi|413917521|gb|AFW57453.1| hypothetical protein ZEAMMB73_666233 [Zea mays]
Length = 373
Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust.
Identities = 226/364 (62%), Positives = 280/364 (76%), Gaps = 41/364 (11%)
Query: 1 MKRFFKPIEKECSAKKPALSPSKK--DGETTETSS-------EENSKKDPLKFVTWNANS 51
MKRFF+P+ K+ S K L+ + + DG T+ ++ E ++P KF+TWNANS
Sbjct: 1 MKRFFQPVPKDGSPSKKRLAGAAEPGDGPTSAGAATGAGGDVEGRPTEEPFKFLTWNANS 60
Query: 52 LLLRVKNNWPEFSNFITTFDPDVIALQ-------------------------------IL 80
LLLR+K++WP FS + DPDVI +Q ++
Sbjct: 61 LLLRMKSDWPAFSQLVARLDPDVICVQEVRMPAAGSKGAPKNPSELKDDTSLSRDEKQVV 120
Query: 81 MRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAE 140
+RALS+ PFK+Y++WWSL+DSKYAGTA+ +KK F+PKKVSF+L++T+ K+E DGRVI+AE
Sbjct: 121 LRALSASPFKDYRVWWSLSDSKYAGTAMFIKKKFEPKKVSFNLDRTSSKHEADGRVIIAE 180
Query: 141 FETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDV 200
FE+F LLNTY+PNNGWKEEEN+FQRRRKWDKR+ EFV Q KPLIWCGDLNVSHEEIDV
Sbjct: 181 FESFLLLNTYSPNNGWKEEENAFQRRRKWDKRMLEFV-QHVDKPLIWCGDLNVSHEEIDV 239
Query: 201 SHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCG 260
SHP+FF++AKLNGY PPNKED GQPGFT AER+RFG IL +G+L+DAYR LHKEKD+D G
Sbjct: 240 SHPDFFSSAKLNGYTPPNKEDCGQPGFTPAERRRFGNILFQGKLVDAYRHLHKEKDIDGG 299
Query: 261 FSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 320
FSWSG+PIGKYRGKRMRIDYF+VSE+LKDRI++CEM G GIEL+GFYGSDHCPVSLELSE
Sbjct: 300 FSWSGHPIGKYRGKRMRIDYFLVSEQLKDRIVSCEMHGRGIELDGFYGSDHCPVSLELSE 359
Query: 321 ASSD 324
A ++
Sbjct: 360 AVAE 363
>gi|413917522|gb|AFW57454.1| hypothetical protein ZEAMMB73_666233 [Zea mays]
Length = 383
Score = 456 bits (1174), Expect = e-126, Method: Compositional matrix adjust.
Identities = 225/374 (60%), Positives = 280/374 (74%), Gaps = 51/374 (13%)
Query: 1 MKRFFKPIEKECSAKKPALSPSKK--DGETTETSS-------EENSKKDPLKFVTWNANS 51
MKRFF+P+ K+ S K L+ + + DG T+ ++ E ++P KF+TWNANS
Sbjct: 1 MKRFFQPVPKDGSPSKKRLAGAAEPGDGPTSAGAATGAGGDVEGRPTEEPFKFLTWNANS 60
Query: 52 LLLRVKNNWPEFSNFITTFDPDVIALQ-------------------------------IL 80
LLLR+K++WP FS + DPDVI +Q ++
Sbjct: 61 LLLRMKSDWPAFSQLVARLDPDVICVQEVRMPAAGSKGAPKNPSELKDDTSLSRDEKQVV 120
Query: 81 MRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAE 140
+RALS+ PFK+Y++WWSL+DSKYAGTA+ +KK F+PKKVSF+L++T+ K+E DGRVI+AE
Sbjct: 121 LRALSASPFKDYRVWWSLSDSKYAGTAMFIKKKFEPKKVSFNLDRTSSKHEADGRVIIAE 180
Query: 141 FETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDV 200
FE+F LLNTY+PNNGWKEEEN+FQRRRKWDKR+ EFV Q KPLIWCGDLNVSHEEIDV
Sbjct: 181 FESFLLLNTYSPNNGWKEEENAFQRRRKWDKRMLEFV-QHVDKPLIWCGDLNVSHEEIDV 239
Query: 201 SHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCG 260
SHP+FF++AKLNGY PPNKED GQPGFT AER+RFG IL +G+L+DAYR LHKEKD+D G
Sbjct: 240 SHPDFFSSAKLNGYTPPNKEDCGQPGFTPAERRRFGNILFQGKLVDAYRHLHKEKDIDGG 299
Query: 261 FSWSGNPIG----------KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 310
FSWSG+PIG +YRGKRMRIDYF+VSE+LKDRI++CEM G GIEL+GFYGSD
Sbjct: 300 FSWSGHPIGNEINFSAYASRYRGKRMRIDYFLVSEQLKDRIVSCEMHGRGIELDGFYGSD 359
Query: 311 HCPVSLELSEASSD 324
HCPVSLELSEA ++
Sbjct: 360 HCPVSLELSEAVAE 373
>gi|255540403|ref|XP_002511266.1| ap endonuclease, putative [Ricinus communis]
gi|223550381|gb|EEF51868.1| ap endonuclease, putative [Ricinus communis]
Length = 326
Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust.
Identities = 223/356 (62%), Positives = 250/356 (70%), Gaps = 64/356 (17%)
Query: 1 MKRFFKPIEKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNW 60
MKRFFKPIEKE SAKKPAL+ +G+ E + K PLKF+TWNANSLLLR KN+W
Sbjct: 1 MKRFFKPIEKEGSAKKPALAQEDSEGKIGENGDNNTTNKQPLKFITWNANSLLLRAKNDW 60
Query: 61 PEFSNFITTFDPDVIALQ-------------------------------ILMRALSSPPF 89
PEF+ F++T DPDVIA+Q ILMRALSSPPF
Sbjct: 61 PEFTKFVSTLDPDVIAIQEVRMPAAGSKGAPKNPGELKDDTSSSREEKQILMRALSSPPF 120
Query: 90 KNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNT 149
+Y+IWWSLADSKYAGTALLVKK F KVSFSL+K+
Sbjct: 121 GSYKIWWSLADSKYAGTALLVKKRFHNIKVSFSLDKSG---------------------- 158
Query: 150 YAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAA 209
+SF R +K DKR+ EFV+Q S KPLIWCGDLNVSHEEIDVSHPEFF AA
Sbjct: 159 ----------GDSF-REKKMDKRMLEFVVQLSDKPLIWCGDLNVSHEEIDVSHPEFFIAA 207
Query: 210 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 269
K NGYVPPNKED GQPGFT+ ERKRFG+IL+EG+LIDAYRFLHKEKDM+ GFSWSGNPIG
Sbjct: 208 KQNGYVPPNKEDCGQPGFTLNERKRFGSILREGKLIDAYRFLHKEKDMERGFSWSGNPIG 267
Query: 270 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEASSDS 325
KYRGKRMRIDYFIVSE+LK RII+CEM G GIEL+GFYGSDHCPVSLEL + DS
Sbjct: 268 KYRGKRMRIDYFIVSEKLKGRIISCEMHGQGIELQGFYGSDHCPVSLELVPTTCDS 323
>gi|326511341|dbj|BAJ87684.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 306
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 192/248 (77%), Positives = 228/248 (91%), Gaps = 1/248 (0%)
Query: 78 QILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVI 137
QI++RALSS PFK+Y++WWSL+DSKYAGTA+ +KK F+PKKVSF+L++T+ K++ DGRVI
Sbjct: 53 QIVLRALSSSPFKDYRVWWSLSDSKYAGTAVFMKKKFEPKKVSFNLDRTSSKHDADGRVI 112
Query: 138 LAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEE 197
+ EFE+F LLNTYAPNNGWKEEENSFQRRRKWDKR+ EFV Q KPLIWCGDLNVSH E
Sbjct: 113 IVEFESFLLLNTYAPNNGWKEEENSFQRRRKWDKRMLEFVQQVD-KPLIWCGDLNVSHGE 171
Query: 198 IDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDM 257
IDVSHP+FF+ AKLNGY+PPNKED GQPGFT+AER+RFG IL +G+L+DAYR+LHKEKDM
Sbjct: 172 IDVSHPDFFSDAKLNGYIPPNKEDCGQPGFTLAERQRFGNILSQGKLVDAYRYLHKEKDM 231
Query: 258 DCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLE 317
+CGFSWSGNPIGKYRGKRMRIDYF+VSE LKDRI++CEM GHGIELEGFYGSDHCPVSLE
Sbjct: 232 ECGFSWSGNPIGKYRGKRMRIDYFVVSEGLKDRIVSCEMHGHGIELEGFYGSDHCPVSLE 291
Query: 318 LSEASSDS 325
LS+ ++++
Sbjct: 292 LSKEAAEA 299
>gi|302823174|ref|XP_002993241.1| hypothetical protein SELMODRAFT_187330 [Selaginella moellendorffii]
gi|300138911|gb|EFJ05662.1| hypothetical protein SELMODRAFT_187330 [Selaginella moellendorffii]
Length = 351
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 193/352 (54%), Positives = 247/352 (70%), Gaps = 44/352 (12%)
Query: 1 MKRFFKPIEKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNW 60
MKRFF+P+E++ ++KKP+++ + + EN+ DP +F++WNANSLLLR KNN
Sbjct: 1 MKRFFQPVERDGASKKPSIAIA---------NGGENACADPSRFMSWNANSLLLRFKNNR 51
Query: 61 PEFSNFITTFDPDVIALQ-------------------------------ILMRALSSPPF 89
E +FI FDPDVI +Q +MR LS P
Sbjct: 52 EEVMSFIRGFDPDVICIQEVRLPAAGFKGEKKNPGEIKDDSAAARNDKQAVMRVLSVSPM 111
Query: 90 KNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLE---KTALKYEPDGRVILAEFETFYL 146
+Y +WWSL ++KYAGTAL VK CF+P V+F+++ K A ++E DGR+ILAEF +F L
Sbjct: 112 ADYSVWWSLGENKYAGTALFVKNCFKPVSVAFNIDNKGKDAQRHEIDGRIILAEFGSFTL 171
Query: 147 LNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFF 206
LNTYAPNNGWKEEEN F RRR WDK++ EFV CS KPLIWCGDLNVSH+EIDV+HPEFF
Sbjct: 172 LNTYAPNNGWKEEENGFVRRRAWDKKVLEFVSSCS-KPLIWCGDLNVSHQEIDVTHPEFF 230
Query: 207 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 266
A A GY PPNKED GQPGFT+ ER RF AIL G L+D YR LH+++D++ GF+WSGN
Sbjct: 231 ANATQPGYTPPNKEDAGQPGFTLNERARFSAILNRGNLVDTYRHLHEKQDLEAGFTWSGN 290
Query: 267 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
P+GKYRGKRMRIDYF++S+ L R+ + ++ G GIELEGF GSDHCP+++EL
Sbjct: 291 PVGKYRGKRMRIDYFLISKALLPRLASSKIHGRGIELEGFLGSDHCPLTMEL 342
>gi|302824275|ref|XP_002993782.1| hypothetical protein SELMODRAFT_137611 [Selaginella moellendorffii]
gi|300138378|gb|EFJ05148.1| hypothetical protein SELMODRAFT_137611 [Selaginella moellendorffii]
Length = 351
Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust.
Identities = 192/352 (54%), Positives = 246/352 (69%), Gaps = 44/352 (12%)
Query: 1 MKRFFKPIEKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNW 60
MKRFF+P+E++ ++KKP+++ + + EN+ DP +F++WNANSLLLR KNN
Sbjct: 1 MKRFFQPVERDGASKKPSIAIA---------NGGENACADPSRFMSWNANSLLLRFKNNR 51
Query: 61 PEFSNFITTFDPDVIALQ-------------------------------ILMRALSSPPF 89
E +FI FDPDVI +Q +MR LS P
Sbjct: 52 EEVMSFIRGFDPDVICIQEVRLPAAGFKGEKKNPGEIKDDSAAARNDKQAVMRVLSVSPM 111
Query: 90 KNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLE---KTALKYEPDGRVILAEFETFYL 146
+Y +WWSL ++KYAGTAL VK CF+P V+F+++ K A ++E DGR+ILAEF +F L
Sbjct: 112 ADYSVWWSLGENKYAGTALFVKNCFKPVSVAFNIDNKGKDAQRHEIDGRIILAEFGSFTL 171
Query: 147 LNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFF 206
LNTYAPNNGWKEEEN F RRR WDK++ EFV CS KPLIWCGDLNVSH+EIDV+HPEFF
Sbjct: 172 LNTYAPNNGWKEEENGFVRRRAWDKKVLEFVSSCS-KPLIWCGDLNVSHQEIDVTHPEFF 230
Query: 207 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 266
A A GY PPNKED GQPGFT+ ER RF IL G L+D YR LH+++D++ GF+WSGN
Sbjct: 231 ANATQPGYTPPNKEDAGQPGFTLNERARFSTILNRGNLVDTYRHLHEKQDLEAGFTWSGN 290
Query: 267 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
P+GKYRGKRMRIDYF++S+ L R+ + ++ G GIELEGF GSDHCP+++EL
Sbjct: 291 PVGKYRGKRMRIDYFLISKALLPRLASSKIHGRGIELEGFLGSDHCPLTMEL 342
>gi|168031629|ref|XP_001768323.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162680501|gb|EDQ66937.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 369
Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust.
Identities = 187/360 (51%), Positives = 243/360 (67%), Gaps = 34/360 (9%)
Query: 1 MKRFFKPIEKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNW 60
MKRFFK I +E S K+ L+ S+ + T + E++ K++P KF++WN NS LLR+K N
Sbjct: 1 MKRFFKSIGREGSFKR--LATSRGEDGTPTCAREDSEKREPTKFMSWNTNSFLLRLKTNR 58
Query: 61 PEFSNFITTFDPDVIALQ-------------------------------ILMRALSSPPF 89
E + + DPDVIA+Q I+MRALS P
Sbjct: 59 EEVLSLLRRLDPDVIAIQEVRIPSAGRKGEPRNHGELKDDTNSAREDKQIMMRALSVSPL 118
Query: 90 KNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNT 149
+Y +WWSL+DSKY GTALLVK P + +SL+ LK+E DGRVILAEF +F LLNT
Sbjct: 119 SDYGVWWSLSDSKYGGTALLVKHSCSPISILYSLDD-KLKHEADGRVILAEFHSFRLLNT 177
Query: 150 YAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAA 209
Y PNN WK+++N F RRR WD R+ EF+ + KPLIWCGDLNVS+E IDVSHP+FF+ A
Sbjct: 178 YVPNNSWKDDDNGFARRRAWDARMIEFLKRPHKKPLIWCGDLNVSNEVIDVSHPDFFSNA 237
Query: 210 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 269
KL GY PPN ED GQPGFT+ ER+RF L +G L+D YR LHK++D D GF+WSGNP+G
Sbjct: 238 KLQGYTPPNAEDIGQPGFTLGERQRFAECLSKGDLVDTYRHLHKQQDFDAGFTWSGNPVG 297
Query: 270 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEASSDSEKRE 329
KYRGKRMRIDYF++S +L DR+++ ++ G GIE EGF GSDHCP+++E+ A+ + K E
Sbjct: 298 KYRGKRMRIDYFLLSRKLLDRLVSSDIHGQGIEQEGFCGSDHCPITMEIRTATKEIAKVE 357
>gi|358348991|ref|XP_003638524.1| DNA-(apurinic or apyrimidinic site) lyase [Medicago truncatula]
gi|355504459|gb|AES85662.1| DNA-(apurinic or apyrimidinic site) lyase [Medicago truncatula]
Length = 278
Score = 353 bits (906), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 183/280 (65%), Positives = 204/280 (72%), Gaps = 41/280 (14%)
Query: 1 MKRFFKPIEKE---CSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVK 57
MKRFFK IEK+ CS K ++ + + + EE +KK+PLKF+TWNANSLLLRVK
Sbjct: 1 MKRFFKVIEKDSEKCSKKPKENENEEEKKQ--DENEEEATKKEPLKFMTWNANSLLLRVK 58
Query: 58 NNWPEFSNFITTFDPDVIALQ------------------------------------ILM 81
NNW EFSNFITTFDPDVIA+Q ILM
Sbjct: 59 NNWSEFSNFITTFDPDVIAIQEVRMPAASSSSSNSKSAPKNQAEVKDDTNAAREEKRILM 118
Query: 82 RALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEF 141
RALS+PPF NY +WWSLA+SKYAGTAL VKKCF+PK V F+L+K A K+EPDGRVIL EF
Sbjct: 119 RALSNPPFGNYHVWWSLAESKYAGTALFVKKCFKPKSVVFNLDKIASKHEPDGRVILVEF 178
Query: 142 ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVS 201
ET LLNTY PNNGWKEE NSFQRRRKWDKRI EFV Q S KPLIWCGDLNVSHEEIDVS
Sbjct: 179 ETLRLLNTYVPNNGWKEEPNSFQRRRKWDKRILEFVNQNSDKPLIWCGDLNVSHEEIDVS 238
Query: 202 HPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 241
PEFF+ AKLNGYVPPNKED+GQPGFT+AER RFG IL+E
Sbjct: 239 QPEFFSTAKLNGYVPPNKEDYGQPGFTLAERARFGTILRE 278
>gi|148908559|gb|ABR17389.1| unknown [Picea sitchensis]
Length = 303
Score = 304 bits (779), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 155/286 (54%), Positives = 193/286 (67%), Gaps = 45/286 (15%)
Query: 1 MKRFFKPIEKECSAKK---------PALSPSKKDGETTETSSEE--NSKKDPLKFVTWNA 49
MKR+F+P+EK+ S KK SP +G T +EE KK+PLKF++WNA
Sbjct: 1 MKRYFQPVEKDGSFKKHKEQLTANPSHSSPPTSNGTTVPPQAEEADGVKKEPLKFMSWNA 60
Query: 50 NSLLLRVKNNWPEFSNFITTFDPDVIALQ------------------------------- 78
NSLLLR+K N E ++F+ DPDVIA+Q
Sbjct: 61 NSLLLRLKKNRTELADFVQRLDPDVIAIQEVRIPAAGGKGGSKNQGELKDDTSSAREEKQ 120
Query: 79 ILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEK---TALKYEPDGR 135
LMRA+S PP NY++WWSL D+KYAGTAL VK QP KV+FSL++ +ALK+E DGR
Sbjct: 121 TLMRAISCPPLSNYRVWWSLGDTKYAGTALFVKHQCQPLKVTFSLDQIGSSALKHEVDGR 180
Query: 136 VILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSH 195
VI+AEFE F LLN+Y PNNGWK++E F+RRRKWD+R+ +FVL S KPLIWCGDLNVSH
Sbjct: 181 VIVAEFEGFRLLNSYVPNNGWKDDETGFRRRRKWDQRMLDFVLGVSDKPLIWCGDLNVSH 240
Query: 196 EEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 241
++IDVSHPEFF+ AK+ GY+PPNKED GQPGFTIAER+RF IL +
Sbjct: 241 QDIDVSHPEFFSNAKIAGYMPPNKEDCGQPGFTIAERRRFSTILSQ 286
>gi|218186665|gb|EEC69092.1| hypothetical protein OsI_37986 [Oryza sativa Indica Group]
Length = 470
Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 149/273 (54%), Positives = 189/273 (69%), Gaps = 58/273 (21%)
Query: 1 MKRFFKPIEKECSA--KKPALSPSKK--------------------DGETTETSSEENSK 38
MKRFF+P+ K+ S K+PA + + +G++ EE
Sbjct: 1 MKRFFQPVPKDGSPAKKRPAAAAAASASDSDSLGGDAPAAAACAVGEGDSPPAPREE--- 57
Query: 39 KDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ-------------------- 78
+P +FVTWNANSLLLR+K++WP F F++ DPDVI +Q
Sbjct: 58 -EPRRFVTWNANSLLLRMKSDWPAFCQFVSRVDPDVICVQEVRMPAAGSKGAPKNPGQLK 116
Query: 79 -----------ILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTA 127
+++RALSSPPFK+Y++WWSL+DSKYAGTA+++KK F+PKKVSF+L++T+
Sbjct: 117 DDTSSSRDEKQVVLRALSSPPFKDYRVWWSLSDSKYAGTAMIIKKKFEPKKVSFNLDRTS 176
Query: 128 LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIW 187
K+EPDGRVI+AEFE+F LLNTYAPNNGWKEEENSFQRRRKWDKR+ EFV Q KPLIW
Sbjct: 177 SKHEPDGRVIIAEFESFLLLNTYAPNNGWKEEENSFQRRRKWDKRMLEFVQQVD-KPLIW 235
Query: 188 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKE 220
CGDLNVSHEEIDVSHP+FF++AKLNGY+PPNKE
Sbjct: 236 CGDLNVSHEEIDVSHPDFFSSAKLNGYIPPNKE 268
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 80/100 (80%), Positives = 95/100 (95%)
Query: 221 DWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDY 280
D GQPGFT++ER+RFG IL +G+L+DAYR+LHKEKDMDCGFSWSG+PIGKYRGKRMRIDY
Sbjct: 360 DCGQPGFTLSERRRFGNILSQGKLVDAYRYLHKEKDMDCGFSWSGHPIGKYRGKRMRIDY 419
Query: 281 FIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 320
F+VSE+LKD+I++C++ G GIELEGFYGSDHCPVSLELSE
Sbjct: 420 FLVSEKLKDQIVSCDIHGRGIELEGFYGSDHCPVSLELSE 459
>gi|194695010|gb|ACF81589.1| unknown [Zea mays]
gi|413917519|gb|AFW57451.1| hypothetical protein ZEAMMB73_666233 [Zea mays]
Length = 161
Score = 257 bits (656), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 121/157 (77%), Positives = 138/157 (87%), Gaps = 1/157 (0%)
Query: 175 EFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKR 234
EFV Q KPLIWCGDLNVSHEEIDVSHP+FF++AKLNGY PPNKED GQPGFT AER+R
Sbjct: 3 EFV-QHVDKPLIWCGDLNVSHEEIDVSHPDFFSSAKLNGYTPPNKEDCGQPGFTPAERRR 61
Query: 235 FGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIAC 294
FG IL +G+L+DAYR LHKEKD+D GFSWSG+PIGKYRGKRMRIDYF+VSE+LKDRI++C
Sbjct: 62 FGNILFQGKLVDAYRHLHKEKDIDGGFSWSGHPIGKYRGKRMRIDYFLVSEQLKDRIVSC 121
Query: 295 EMQGHGIELEGFYGSDHCPVSLELSEASSDSEKREKK 331
EM G GIEL+GFYGSDHCPVSLELSEA ++ + K
Sbjct: 122 EMHGRGIELDGFYGSDHCPVSLELSEAVAEEAPGQPK 158
>gi|255085372|ref|XP_002505117.1| predicted protein [Micromonas sp. RCC299]
gi|226520386|gb|ACO66375.1| predicted protein [Micromonas sp. RCC299]
Length = 418
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 145/400 (36%), Positives = 190/400 (47%), Gaps = 80/400 (20%)
Query: 1 MKRFFKPIEKECS--AKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLL--LRV 56
MKRFF+P + S AK P+ G T + + + + DP FVTWNANSLL LR
Sbjct: 1 MKRFFQPAVPDPSKRAKGSGDDPTGLGG-TAKGLGDNDKRSDPRSFVTWNANSLLGRLRK 59
Query: 57 KNNWPEFSNFITTFD-PDVIALQ---------------------------ILMRALSSPP 88
+ + ++ D PDVI +Q ++ L P
Sbjct: 60 QPDKDALFEYLREKDLPDVICVQETWLPAAAPNRRGTLKDDTKAAREDAALIHLCLRQKP 119
Query: 89 FKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKT----ALKYEPDGRVILAEFETF 144
Y+ +WS AD K AG A+LVKK V SL + +GRV+L EF +F
Sbjct: 120 LSAYRPYWSCADVKRAGCAVLVKKDVDVVSVRRSLTASNGANGDVAHDEGRVLLLEFRSF 179
Query: 145 YLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG--------------------KP 184
LLNTYA NNGW +E SF +RR+WD + F+ + KP
Sbjct: 180 VLLNTYAQNNGWTQE--SFAKRRRWDAEVHAFIAGNTAGATPRPRFDDSDLNATSRRFKP 237
Query: 185 LIWCGDLNVSHEEIDVSHPEFFAAAKLNGY-------VPPNKEDWGQPGFTIAERKRFGA 237
L+W GDLNV H+EIDV+HP FFA K G P + D GQPGFT ER RF
Sbjct: 238 LMWTGDLNVCHKEIDVTHPRFFATQKPEGRKGKPPPETPTDPGDCGQPGFTRNERTRFER 297
Query: 238 ILKEGRLIDAYRFLHKEKDMDCGFSWSGNP----IGKYRGKRMRIDYFIVSEELKDRIIA 293
++ L+DAYR + D+ +W G+P +GKYRG MR+DYF V EL +R+
Sbjct: 298 LVTAHALVDAYR--RQRGDVKDAMTWMGHPGVVAVGKYRGMGMRLDYFFVETELANRVEV 355
Query: 294 CEMQGHGIEL--------EGFYGSDHCPVSLELSEASSDS 325
CE G+ L F+GSDHC V L L + D
Sbjct: 356 CEQATDGMGLAAMAERPASAFFGSDHCAVYLRLKDVPLDG 395
>gi|124504779|ref|XP_001351132.1| AP endonuclease (DNA-[apurinic or apyrimidinic site] lyase),
putative [Plasmodium falciparum 3D7]
gi|15375379|emb|CAB39006.2| AP endonuclease (DNA-[apurinic or apyrimidinic site] lyase),
putative [Plasmodium falciparum 3D7]
Length = 617
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 130/349 (37%), Positives = 175/349 (50%), Gaps = 72/349 (20%)
Query: 36 NSKKDPLKFVTWNANSLLLRVKNN--WPEFSNFITTFDPDVIALQI-------------- 79
N K D VTWN NS+ +R KN W EF NF + DV+ Q
Sbjct: 272 NIKNDVKIIVTWNMNSITVRYKNKKKWDEFMNFFNNLNADVLCFQEVRLPAMNLSEPCDN 331
Query: 80 -----------------------------LMRALSSPPFKNYQIWWSLADSKYAGTALLV 110
+M + + FK+Y ++SLA+ KY+G +LV
Sbjct: 332 KNKNKNKNDGIRDRGKIKNSDQKSLADYEIMEQILNDDFKDYNAYFSLANIKYSGQLVLV 391
Query: 111 KKCFQPKKVSFSL--EKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRK 168
KK + + ++L E A + +GRVIL EF F+LL+TY PNNG+ + F+RRR
Sbjct: 392 KKNIHIESIRYNLFFENNAHIHHDEGRVILVEFSNFFLLSTYTPNNGF--DHVKFERRRL 449
Query: 169 WDKRIQEFVLQCSG---KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQP 225
+D+++Q+FV KPL+W GDLN++ E+ID+SHP F K G VP KE GQP
Sbjct: 450 FDEQLQKFVTILRNEKQKPLVWTGDLNIAPEDIDLSHPAEFRRMK-KGNVP--KEFIGQP 506
Query: 226 GFTIAERKRFGAILKEGRLIDAYRFL--------------HKEKDMDCGFSWSGNP--IG 269
G T ERK F IL G L+D+YR+L H D ++W P +G
Sbjct: 507 GCTDFERKNFQKILTAGNLVDSYRYLQNIKLNEDKKNNIKHTPNINDNIYTWRC-PFLLG 565
Query: 270 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
K K MRID+FIVS+E +RI +QG + FYGSDHCPV L L
Sbjct: 566 KSCNKAMRIDHFIVSKEFLNRINKIHIQGFSVFHNNFYGSDHCPVILYL 614
>gi|221481831|gb|EEE20201.1| ap endonuclease, putative [Toxoplasma gondii GT1]
Length = 630
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 126/374 (33%), Positives = 186/374 (49%), Gaps = 76/374 (20%)
Query: 19 LSPSKKDGETTETS-------SEENSKKDPLKFVTWNANSLLLRVKNN--WPEFSNFITT 69
L+PS++ ET E +E +K PL VTWN NS+ R++++ W FS F+
Sbjct: 171 LNPSRETRETEEDGEGELERRTEGPKRKAPLSIVTWNVNSIAARIRDSRQWFYFSRFLQK 230
Query: 70 FDPDVIALQILMRALSSPP------------------------------------FKNYQ 93
DPD++ LQ + A PP N+
Sbjct: 231 IDPDILCLQEVKLAAHGPPGAKRGDGMPRDHGRIKDSDKVSSVEARELREALHTLLPNHS 290
Query: 94 IWWSLADSKYAGTALLVKKCFQPKKVSFSLEK---TALKYEPDGRVILAEFETFYLLNTY 150
+ SLAD +Y+G + ++K Q + ++L A +++ +GRVILAEFE F +L TY
Sbjct: 291 LLISLADWRYSGQMMFIRKDVQVCSLRYNLSLDGCPAHEHDFEGRVILAEFEAFCVLTTY 350
Query: 151 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-------------KPLIWCGDLNVSHEE 197
+PNNG + SF+RRR WD+R+ +FV QCS KPL+W GDLN + E+
Sbjct: 351 SPNNGATPK--SFERRRLWDERMLQFVTQCSSSPHCEGLPVQLLKKPLVWVGDLNCAPED 408
Query: 198 IDVSHPEFFAAA---KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKE 254
ID+S P+ F + +G + P+ + GQ G T AER+RF AIL+ G L+DA+R LH
Sbjct: 409 IDLSDPDQFRSVIHETADGTIDPD--NIGQAGCTDAERRRFRAILERGNLVDAFRELHPR 466
Query: 255 KDM----DCGFSWSGNPIGK----YRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 306
+ +SW G RG MR+D+ +++E L + + G G F
Sbjct: 467 TEPPPLESAEYSWRGFGGSGSRGLLRGLGMRLDHIVLTETLMPAVELVRICGAGKSKANF 526
Query: 307 YGSDHCPVSLELSE 320
+GSDHCPV + E
Sbjct: 527 FGSDHCPVLVRFKE 540
>gi|70954382|ref|XP_746240.1| AP endonuclease (DNA-(apurinic or apyrimidinic site) lyase)
[Plasmodium chabaudi chabaudi]
gi|56526785|emb|CAH87963.1| AP endonuclease (DNA-(apurinic or apyrimidinic site) lyase),
putative [Plasmodium chabaudi chabaudi]
Length = 350
Score = 191 bits (485), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 128/347 (36%), Positives = 175/347 (50%), Gaps = 78/347 (22%)
Query: 44 FVTWNANSLLLRVKNN--WPEFSNFITTFDPDVIALQ-ILMRALSSPP------------ 88
VTWN NS+ +R KN W +F F+ + DV+ Q + + AL+ P
Sbjct: 8 IVTWNMNSITVRYKNKDKWKKFIKFVNEINADVLCFQEVRLPALNIPKNEEVKVEDNKTY 67
Query: 89 ---------------------------------------FKNYQIWWSLADSKYAGTALL 109
FK Y ++SLA+ KY+G +L
Sbjct: 68 GRKKTEKIIDEERDRGSVKNTDQKSLLDYNIVEDILKKDFKEYNAYFSLANIKYSGQLVL 127
Query: 110 VKKCFQPKKVSFSL--EKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRR 167
VKK + K V ++L + + +GR+IL EF FYLL+TY+PNNG+ + F+RRR
Sbjct: 128 VKKTIEVKSVRYNLSFDTNPNIHNDEGRIILLEFSNFYLLSTYSPNNGF--DAPKFERRR 185
Query: 168 KWDKRIQEFVL--QCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQP 225
+D ++EFVL + K LIW GDLN++ E+ID+SHP F K G VP KE GQP
Sbjct: 186 LFDDSMKEFVLFMKKENKNLIWTGDLNIAPEDIDLSHPIEFRKMK-KGNVP--KEYIGQP 242
Query: 226 GFTIAERKRFGAILKEGRLIDAYRFLH------------KEKDMDCGFSWSGNP--IGKY 271
G T AERK F ILK G L+D+YR+ K D ++W P IGK
Sbjct: 243 GCTDAERKNFKTILKNGDLVDSYRYFENYKIKNDPTYKKKTNINDNIYTWRC-PFLIGKS 301
Query: 272 RGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
+ MRID+FIVS+ L D+I E+ G+ + FYGSDHCPV L +
Sbjct: 302 CNRAMRIDHFIVSKSLLDKIENVEIHGYSVSHTNFYGSDHCPVILNM 348
>gi|310893421|gb|ADP37706.1| AP endonuclease ExoIII [Toxoplasma gondii]
Length = 513
Score = 191 bits (485), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 124/361 (34%), Positives = 184/361 (50%), Gaps = 64/361 (17%)
Query: 19 LSPSKKDGETTETS-------SEENSKKDPLKFVTWNANSLLLRVKNN--WPEFSNFITT 69
L+PS++ ET E +E +K PL VTWN NS+ R++++ W FS F+
Sbjct: 68 LNPSRETRETEEDGEGELERRTEGPKRKAPLSIVTWNVNSIAARIRDSRQWFYFSRFLQK 127
Query: 70 FDPDVIALQILMRALSSPP------------------------------------FKNYQ 93
DPD++ LQ + A PP N+
Sbjct: 128 IDPDILCLQEVKLAAHGPPGAKRGDGMPRDHGRIKDSDKVSSVEARELREALHTLLPNHS 187
Query: 94 IWWSLADSKYAGTALLVKKCFQPKKVSFSLEKT---ALKYEPDGRVILAEFETFYLLNTY 150
+ SLAD +Y+G + ++K Q + ++L A +++ +GRVILAEFE F +L TY
Sbjct: 188 LLISLADWRYSGQMMFIRKDVQVCSLRYNLSLDGCPAHEHDFEGRVILAEFEAFCVLTTY 247
Query: 151 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAA- 209
+PNNG + SF+RRR WD+R+ +FV Q KPL+W GDLN + E+ID+S P+ F +
Sbjct: 248 SPNNGATPK--SFERRRLWDERMLQFVTQLK-KPLVWVGDLNCAPEDIDLSDPDQFRSVI 304
Query: 210 --KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKD----MDCGFSW 263
+G + P+ + GQ G T AER+RF AIL+ G L+DA+R LH + +SW
Sbjct: 305 HETADGTIDPD--NIGQAGCTDAERRRFRAILERGNLVDAFRELHPRTEPPPLESAEYSW 362
Query: 264 SGNPIGK----YRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
G RG MR+D+ +++E L + + G G F+GSDHCPV +
Sbjct: 363 RGFGGSGSRGLLRGLGMRLDHIVLTETLMPAVELVRICGAGKSKANFFGSDHCPVLVRFK 422
Query: 320 E 320
E
Sbjct: 423 E 423
>gi|237843341|ref|XP_002370968.1| DNA-(apurinic or apyrimidinic site) lyase, putative [Toxoplasma
gondii ME49]
gi|211968632|gb|EEB03828.1| DNA-(apurinic or apyrimidinic site) lyase, putative [Toxoplasma
gondii ME49]
gi|221502330|gb|EEE28063.1| ap endonuclease, putative [Toxoplasma gondii VEG]
Length = 630
Score = 191 bits (484), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 125/368 (33%), Positives = 184/368 (50%), Gaps = 76/368 (20%)
Query: 19 LSPSKKDGETTETS-------SEENSKKDPLKFVTWNANSLLLRVKNN--WPEFSNFITT 69
L+PS++ ET E +E +K PL VTWN NS+ R++++ W FS F+
Sbjct: 171 LNPSRETRETEEDGEGELERRTEGPKRKAPLSIVTWNVNSIAARIRDSRQWFYFSRFLQK 230
Query: 70 FDPDVIALQILMRALSSPP------------------------------------FKNYQ 93
DPD++ LQ + A PP N+
Sbjct: 231 IDPDILCLQEVKLAAHGPPGAKRGDGMPRDHGRIKDSDKVSSVEARELREALHTLLPNHS 290
Query: 94 IWWSLADSKYAGTALLVKKCFQPKKVSFSLEK---TALKYEPDGRVILAEFETFYLLNTY 150
+ SLAD +Y+G + ++K Q + ++L A +++ +GRVILAEFE F +L TY
Sbjct: 291 LLISLADWRYSGQMMFIRKDVQVCSLRYNLSLDGCPAHEHDFEGRVILAEFEAFCVLTTY 350
Query: 151 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-------------KPLIWCGDLNVSHEE 197
+PNNG + SF+RRR WD+R+ +FV QCS KPL+W GDLN + E+
Sbjct: 351 SPNNGATPK--SFERRRLWDERMLQFVTQCSSSPHCEGLPVQLLKKPLVWVGDLNCAPED 408
Query: 198 IDVSHPEFFAAA---KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKE 254
ID+S P+ F + +G + P+ + GQ G T AER+RF AIL+ G L+DA+R LH
Sbjct: 409 IDLSDPDQFRSVIHETADGTIDPD--NIGQAGCTDAERRRFRAILERGNLVDAFRELHPR 466
Query: 255 KDM----DCGFSWSGNPIGK----YRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 306
+ +SW G RG MR+D+ +++E L + + G G F
Sbjct: 467 TEPPPLESAEYSWRGFGGSGSRGLLRGLGMRLDHIVLTETLMPAVELVRICGAGKSKANF 526
Query: 307 YGSDHCPV 314
+GSDHCPV
Sbjct: 527 FGSDHCPV 534
>gi|83314890|ref|XP_730557.1| AP endonuclease-related [Plasmodium yoelii yoelii 17XNL]
gi|23490314|gb|EAA22122.1| putative AP endonuclease-related [Plasmodium yoelii yoelii]
Length = 554
Score = 190 bits (483), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 126/350 (36%), Positives = 176/350 (50%), Gaps = 79/350 (22%)
Query: 44 FVTWNANSLLLRVKN--NWPEFSNFITTFDPDVIALQ-ILMRALSSPP------------ 88
VTWN NS+ +R KN W F F+ + DV+ Q + + AL+ P
Sbjct: 211 IVTWNMNSITVRYKNREKWKRFIKFVNEINADVLCFQEVRLPALNVPKNGVKNGVKNGVK 270
Query: 89 ----------------------------------------FKNYQIWWSLADSKYAGTAL 108
FK Y ++SLA+ KY+G +
Sbjct: 271 NGVKNEVKNEDEERERGLVKNTDQKSMIDYKIVEDILKNDFKEYNSYFSLANIKYSGQLV 330
Query: 109 LVKKCFQPKKVSFSL--EKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRR 166
LVKK + K V ++L E + +GR+IL EF FYLL+TY+PNNG+ ++ F RR
Sbjct: 331 LVKKDIKVKSVRYNLLFETDPNIHNDEGRIILLEFSNFYLLSTYSPNNGF--DQIKFNRR 388
Query: 167 RKWDKRIQEFVL--QCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQ 224
+ +D++++ FVL + K LIW GDLN++ E+ID+SHP F K G VP KE GQ
Sbjct: 389 KLYDEQMKNFVLFMKNENKNLIWTGDLNIAPEDIDLSHPIEFRKMK-KGNVP--KEYIGQ 445
Query: 225 PGFTIAERKRFGAILKEGRLIDAYRFLH------------KEKDMDCGFSWSGNP--IGK 270
PG T AER+ F ILK G L+D+YR+ K D ++W P IGK
Sbjct: 446 PGCTDAERENFKTILKNGNLVDSYRYFENYKIKNDPTYKKKTNINDNIYTWRC-PFLIGK 504
Query: 271 YRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 320
+ MRID+FIVS+ L ++I E+ G+ + FYGSDHCPV L + E
Sbjct: 505 SCNRAMRIDHFIVSKNLLNQIENVEIHGYSVSHTNFYGSDHCPVILNMKE 554
>gi|68063675|ref|XP_673834.1| AP endonuclease (DNA-(apurinic or apyrimidinic site) lyase)
[Plasmodium berghei strain ANKA]
gi|68070845|ref|XP_677336.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56491972|emb|CAI02361.1| AP endonuclease (DNA-(apurinic or apyrimidinic site) lyase),
putative [Plasmodium berghei]
gi|56497413|emb|CAH98029.1| hypothetical protein PB000718.02.0 [Plasmodium berghei]
Length = 346
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 126/349 (36%), Positives = 176/349 (50%), Gaps = 74/349 (21%)
Query: 38 KKDPLKFVTWNANSLLLRVKNN--WPEFSNFITTFDPDVIALQ-ILMRALS--------- 85
+K+ VTWN NS+ +R KN W F F+ + DV+ Q + + AL+
Sbjct: 2 RKNVNVIVTWNMNSITVRYKNKEKWKRFMKFVNEINADVLCFQEVRLPALNISKNESKNV 61
Query: 86 --------------------------------------SPPFKNYQIWWSLADSKYAGTA 107
FK Y ++SLA+ KY+G
Sbjct: 62 NNKVYGGKKNEGEERNRGSVKNTDQKSLIDYKIVEEILKNDFKEYNGYFSLANIKYSGQL 121
Query: 108 LLVKKCFQPKKVSFSL--EKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR 165
+LVKK + K V ++L E + +GR+IL EF FYLL+TY+PNNG+ ++ F+R
Sbjct: 122 VLVKKSIKVKSVRYNLLFETDPNIHNDEGRIILLEFSNFYLLSTYSPNNGF--DQTKFKR 179
Query: 166 RRKWDKRIQEFVL--QCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWG 223
R +D +++EFVL + K LIW GDLN++ E++D+SHP F K G VP KE G
Sbjct: 180 RSLFDNQMKEFVLFMKNENKNLIWTGDLNIAPEDVDLSHPIEFRKMK-KGNVP--KEYIG 236
Query: 224 QPGFTIAERKRFGAILKEGRLIDAYRFL------------HKEKDMDCGFSWSGNP--IG 269
QPG T AER F ILK G LID+YR+ K D ++W P IG
Sbjct: 237 QPGCTDAERANFKTILKNGDLIDSYRYFENYKIKNDPTYKRKTNINDNIYTWRC-PFLIG 295
Query: 270 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
K + MRID+FIVS+ L ++I E+ G+ + FYGSDHCPV L +
Sbjct: 296 KSCNRAMRIDHFIVSKNLLNQIENIEIHGYSVFHTNFYGSDHCPVILNM 344
>gi|221055699|ref|XP_002258988.1| AP endonuclease (DNA-(apurinic or apyrimidinic site) lyase)
[Plasmodium knowlesi strain H]
gi|193809058|emb|CAQ39761.1| AP endonuclease (DNA-(apurinic or apyrimidinic site) lyase),
putative [Plasmodium knowlesi strain H]
Length = 516
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 121/336 (36%), Positives = 166/336 (49%), Gaps = 67/336 (19%)
Query: 44 FVTWNANSLLLRVKNN--WPEFSNFITTFDPDVIALQ----------------------- 78
VTWN NS+ +R KN W F +F + DV+ Q
Sbjct: 184 IVTWNMNSITVRYKNKEKWNAFMSFFNRINADVLCFQEVRLPALNLYDAKEAKDGERDRG 243
Query: 79 -------------ILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSL-- 123
+M + F NY ++SLA+ KY+G +LVK+ K + ++L
Sbjct: 244 KVKNTDQKSQVDFDIMEKILKEDFHNYNAYFSLANIKYSGQLVLVKRSIPIKSIRYNLSF 303
Query: 124 EKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV--LQCS 181
+ ++ +GRVI+ EF FYLL+TY PNNG+ E F+RRR +D++++EFV L+
Sbjct: 304 DLDPREHHHEGRVIIVEFSKFYLLSTYTPNNGF--EPVKFERRRLFDEKLKEFVSVLRNK 361
Query: 182 GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 241
K L+W GDLN++ E+ D+SHP F K G VP KE GQPG T ERK F IL
Sbjct: 362 KKNLVWTGDLNIAPEDTDLSHPAEFRRMK-KGNVP--KEFVGQPGCTDFERKNFRGILSA 418
Query: 242 GRLIDAYRFL--------------HKEKDMDCG---FSWSGNP--IGKYRGKRMRIDYFI 282
G LID+YR L H D ++W P +GK K MRID+FI
Sbjct: 419 GDLIDSYRHLANLRANKGEPGKATHNRAVSDINDNIYTWRC-PFLMGKSCNKAMRIDHFI 477
Query: 283 VSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
VS + + E+ G+ + FYGSDHCPV L L
Sbjct: 478 VSRDFMPNVENVEIHGYSVFHNNFYGSDHCPVILHL 513
>gi|389583540|dbj|GAB66275.1| AP endonuclease, partial [Plasmodium cynomolgi strain B]
Length = 389
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 124/374 (33%), Positives = 179/374 (47%), Gaps = 77/374 (20%)
Query: 16 KPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNN--WPEFSNFITTFDPD 73
KP + + + E +++ VTWN NS+ +R KN W F +F + D
Sbjct: 3 KPQIGTATLKTNQSTQQGETKKEEEVKTIVTWNMNSITVRYKNKEKWNAFMSFFNRINAD 62
Query: 74 VIALQI------------------------------------LMRALSSPPFKNYQIWWS 97
V+ Q +M + F NY ++S
Sbjct: 63 VLCFQEVRLPAMNLDNVKNAKDGKRDRGRVKNTDQKSQVDFEIMEQILKKDFHNYNAYFS 122
Query: 98 LADSKYAGTALLVKKCFQPKKVSFSLEKTA--LKYEPDGRVILAEFETFYLLNTYAPNNG 155
LA+ KY+G +L+K+ K + ++L A ++ +GRVI+AEF F+LL+TY PNNG
Sbjct: 123 LANIKYSGQLVLIKRSIPVKSIRYNLSFDADPSEHHEEGRVIVAEFSNFFLLSTYTPNNG 182
Query: 156 WKEEENSFQRRRKWDKRIQEF--VLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNG 213
+ + F+RRR +D++++EF VL+ K LIW GDLN++ E+ID+SHP F K G
Sbjct: 183 F--DLIKFERRRLFDEQLKEFVSVLKNKKKNLIWTGDLNIAPEDIDLSHPAEFRRMK-KG 239
Query: 214 YVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNP------ 267
VP KE GQPG T ERK F IL G LID+YR L K + + G + G P
Sbjct: 240 NVP--KEFVGQPGCTDFERKNFRGILSAGDLIDSYRHLAKLRG-NKGGAVKGEPAKGEPL 296
Query: 268 -----------------------IGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELE 304
+GK K MRID+FIVS + + + ++ G+ +
Sbjct: 297 KVTPGKVTGDINDNIYTWRCPFLMGKSCNKAMRIDHFIVSRDFMPNVESVDIHGYSVFHN 356
Query: 305 GFYGSDHCPVSLEL 318
FYGSDHCPV L L
Sbjct: 357 NFYGSDHCPVILRL 370
>gi|156094081|ref|XP_001613078.1| AP endonuclease [Plasmodium vivax Sal-1]
gi|148801952|gb|EDL43351.1| AP endonuclease (DNA-[apurinic or apyrimidinic site] lyase),
putative [Plasmodium vivax]
Length = 535
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 122/351 (34%), Positives = 171/351 (48%), Gaps = 81/351 (23%)
Query: 44 FVTWNANSLLLRVKNN--WPEFSNFITTFDPDVIALQ----------------------- 78
VTWN NS+ +R KN W F +F + DV+ Q
Sbjct: 168 IVTWNMNSITVRYKNKDKWNAFMSFFNRINADVLCFQEVRLPALNLCAVKNSKEGKRDRG 227
Query: 79 -------------ILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEK 125
+M + F NY ++SLA+ KY+G +L+K+ K + ++L
Sbjct: 228 KVKNTDQKSQVDFDIMSKILKKDFHNYNAYFSLANIKYSGQLVLIKRNIPVKSIRYNLRL 287
Query: 126 TA--LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV--LQCS 181
A ++ +GRVI+AEF FYLL+TY PNNG+ + F+RRR +D+++++FV L+
Sbjct: 288 DADPSEHHEEGRVIIAEFSKFYLLSTYTPNNGF--DTVKFERRRLFDEQLKKFVSHLRNM 345
Query: 182 GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 241
GK LIW GDLN++ E+ID+SHP F K G VP KE GQPG T ERK F IL
Sbjct: 346 GKNLIWTGDLNIAPEDIDLSHPAEFRRMK-KGNVP--KEFVGQPGCTDFERKNFMGILSA 402
Query: 242 GRLIDAYRFL-------------------HKEKDMDC-GFSWSGNP-------------- 267
G L+D+YR L K C G + +G P
Sbjct: 403 GDLVDSYRQLAGKGKAKKGEASKGETNKGETSKGGSCNGAATNGAPDINDNIYTWRCPFL 462
Query: 268 IGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
+GK K MRID+FIVS + + ++ G+ + + FYGSDHCPV L L
Sbjct: 463 MGKSCNKAMRIDHFIVSRGFMPNVQSVDIHGYSVFHKNFYGSDHCPVILHL 513
>gi|14578320|gb|AAF99486.1| PV1H14200_P [Plasmodium vivax]
Length = 540
Score = 177 bits (450), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 122/356 (34%), Positives = 171/356 (48%), Gaps = 86/356 (24%)
Query: 44 FVTWNANSLLLRVKNN--WPEFSNFITTFDPDVIALQ----------------------- 78
VTWN NS+ +R KN W F +F + DV+ Q
Sbjct: 168 IVTWNMNSITVRYKNKDKWNAFMSFFNRINADVLCFQEVRLPALNLCAVKNSKEGKRDRG 227
Query: 79 -------------ILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEK 125
+M + F NY ++SLA+ KY+G +L+K+ K + ++L
Sbjct: 228 KVKNTDQKSQVDFDIMSKILKKDFHNYNAYFSLANIKYSGQLVLIKRNIPVKSIRYNLRL 287
Query: 126 TA--LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV--LQCS 181
A ++ +GRVI+AEF FYLL+TY PNNG+ + F+RRR +D+++++FV L+
Sbjct: 288 DADPSEHHEEGRVIIAEFSKFYLLSTYTPNNGF--DTVKFERRRLFDEQLKKFVSHLRNM 345
Query: 182 GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 241
GK LIW GDLN++ E+ID+SHP F K G VP KE GQPG T ERK F IL
Sbjct: 346 GKNLIWTGDLNIAPEDIDLSHPAEFRRMK-KGNVP--KEFVGQPGCTDFERKNFMGILSA 402
Query: 242 GRLIDAYRFL-------------------HKEKDMDC------GFSWSGNP--------- 267
G L+D+YR L K C G + +G P
Sbjct: 403 GDLVDSYRQLAGKGKAKKGEASKGETNKGETSKGGSCNGGSCNGAATNGAPDINDNIYTW 462
Query: 268 -----IGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
+GK K MRID+FIVS + + ++ G+ + + FYGSDHCPV L L
Sbjct: 463 RCPFLMGKSCNKAMRIDHFIVSRGFMPNVQSVDIHGYSVFHKNFYGSDHCPVILHL 518
>gi|428171338|gb|EKX40256.1| hypothetical protein GUITHDRAFT_75737 [Guillardia theta CCMP2712]
Length = 304
Score = 176 bits (447), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 107/291 (36%), Positives = 156/291 (53%), Gaps = 65/291 (22%)
Query: 32 SSEENSKKDPLKFVTWNANSLLLRVKN--NWPEFSNFITTFDPDVIALQILMRALSSPP- 88
+S +S + P F++WNANSL+ R K N F + + +PDVIALQ + S+PP
Sbjct: 31 TSSASSGRLPRSFLSWNANSLVNRCKEEENMRGFCDLVLKLEPDVIALQEVRMVASAPPG 90
Query: 89 ------------------------------------FKNYQIWWSLADSKYAGTALLVKK 112
NY + WSLAD +YAGTAL+++K
Sbjct: 91 SKRGDGRKRDRGSPRDNEKECKEELELVASALRKEPLSNYVVRWSLADWRYAGTALMIRK 150
Query: 113 CFQPKKVSFSLE-KTALKYEPDGRVILAEF-----ETFYLLNTYAPNNGWKEEENSFQRR 166
+ K VSF +++ +GRV +A+F + ++NTYAPNNGWKEE N F +R
Sbjct: 151 GIR-KPVSFHYNLDLGQEHDENGRVCMAKFVKDDGKELLVVNTYAPNNGWKEESN-FAKR 208
Query: 167 RKWDKRIQEFVLQCS--GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQ 224
R+WD R+ FV C G + W GD+NV+H++ DV+HP+FF + D GQ
Sbjct: 209 REWDTRLLSFVRTCRERGMEVAWVGDMNVAHKDCDVTHPDFF------------RGDAGQ 256
Query: 225 PGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 275
PGFT E++RF +L+EG L+DA+R LH ++ F+ S +P +RG+R
Sbjct: 257 PGFTANEQERFSQVLEEGSLVDAFRLLHSPEE----FTSSDDPAWTWRGQR 303
>gi|303282399|ref|XP_003060491.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226457962|gb|EEH55260.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 514
Score = 173 bits (439), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 107/308 (34%), Positives = 143/308 (46%), Gaps = 75/308 (24%)
Query: 84 LSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTA--LKYEPDGRVILAEF 141
+ P Y+ W+ AD + AG +LVKK K S SL + A P+GRV+ EF
Sbjct: 1 MRQKPMSRYEPHWACADKRSAGCGVLVKKHIPVKSASRSLTRRAGEASQHPEGRVLFLEF 60
Query: 142 ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ----------------CSG--- 182
E LLN YA NNGWK E S +RR+WD ++ F+ C+
Sbjct: 61 ENVTLLNVYAQNNGWKPE--SMAKRRRWDAELKTFLTNDDDDDDDDDDDDDAQLCAASKD 118
Query: 183 -----------------------------KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNG 213
KP++W GDLN H E DV+HPEFFA K G
Sbjct: 119 ATTSNDATSKTNASSLRPRRPTRADGKGLKPIVWTGDLNACHTERDVTHPEFFALQKPEG 178
Query: 214 Y-------VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 266
PP+ +D GQPGFT ER+RF I+ +L+D YR LH + C +W G+
Sbjct: 179 KKGAPPPETPPDVDDRGQPGFTNNERRRFHDIVTSAKLVDVYRHLHGDARRAC--TWYGH 236
Query: 267 P----IGKYRGKRMRIDYFIVSEELKDRIIACEMQGHG-----IELE-----GFYGSDHC 312
P G+Y+G+ MR+DYF VS+ L+ + C LE F+GSDHC
Sbjct: 237 PGVVATGRYKGRGMRLDYFFVSDGLERAAVECAQATDAYSDKPAALEQRPDDAFFGSDHC 296
Query: 313 PVSLELSE 320
V L+L +
Sbjct: 297 GVYLKLKD 304
>gi|298710453|emb|CBJ25517.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 411
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 122/351 (34%), Positives = 167/351 (47%), Gaps = 82/351 (23%)
Query: 41 PLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ-ILMRALSSPPFK--------- 90
P VT+N N R+ NW E F+ PD++ Q + + A P K
Sbjct: 68 PRTIVTFNLNGASPRLAKNWNEIKGFLEEHKPDLVCFQEVRLPAKGVPKAKKEDDTGRKR 127
Query: 91 ----------------------------NYQIWWSLADSKYAGTALLVKK-----CFQPK 117
Y++ SLA+SKYAGTA L+ P
Sbjct: 128 WQLKDDTAADRKDIALVDRTLRALARRLGYRLVMSLANSKYAGTAALISTWGAVFAITPV 187
Query: 118 KVSFS-------------LEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQ 164
++F+ L K +++ +GRVI E+ + +L Y PNNG K E SFQ
Sbjct: 188 TIAFAGRLGLSALDLPEPLGKLFKEHDREGRVIAIEYPSVTVLALYVPNNGSKAE--SFQ 245
Query: 165 RRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP-NKEDWG 223
RRR+WD + FV + SGK LI GDLNV+HE+ D++H FF G P N ED G
Sbjct: 246 RRRRWDDELCGFVDKYSGK-LIITGDLNVAHEDADLTHASFF-----KGMFPAANPEDSG 299
Query: 224 QPGFTIAERKRFGAILKEGR-LIDAYRFLH---------KEKDMDCGFSWSGNP------ 267
QPG T AE++R +L G L+DAYR L+ +M+ G +W G
Sbjct: 300 QPGCTPAEKRRHSRLLASGGGLVDAYRRLNPVPAAGAGGARTEME-GMTWRGTAGNQVAA 358
Query: 268 IGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
+G+Y GK MRIDYF++S L RI ++ G G + +GF GSDHCP+ L L
Sbjct: 359 MGRYYGKGMRIDYFLLSTALAPRIKEVKVFGSGADRDGFLGSDHCPLMLTL 409
>gi|294932897|ref|XP_002780496.1| ap endonuclease, putative [Perkinsus marinus ATCC 50983]
gi|239890430|gb|EER12291.1| ap endonuclease, putative [Perkinsus marinus ATCC 50983]
Length = 395
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 121/373 (32%), Positives = 190/373 (50%), Gaps = 64/373 (17%)
Query: 1 MKRFFKPIEKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKN-- 58
+ FFK +E + K P ++ + ET ++ + WNA+SLL R+KN
Sbjct: 7 LTDFFKKVENPKATKIPKVTVVSRVPET-------------IRLMAWNADSLLNRIKNKE 53
Query: 59 NWPEFSNFITTFDPDVIALQILMRALSSPPFKNY-------------------------- 92
E + + D +V+ + + A S
Sbjct: 54 TAKEIAKVVKDHDVNVLCVCEVRMACESCSSTGAIDRVNSNQGAERDLVVNFLTRQCGFD 113
Query: 93 QIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALK----YEPDGRVILAEF--ETFYL 146
Q+++SL + K AG + ++K +P +V F + T + + P+GR+ILA+F E L
Sbjct: 114 QLYFSLRNIKQAGVGMFMRKMPKPDRVHFKIPGTEVGGDGFHHPEGRIILADFASENLQL 173
Query: 147 LNTYAPNNGWKEEENSFQRRRKWDKRIQEFVL--QCSGKPLIWCGDLNVSHEEIDVS-HP 203
L TY PNNGW E+ SF +RR++D ++ F+ + G+ +IW GDLNV+ DV +P
Sbjct: 174 LLTYVPNNGWTED--SFAKRRRFDCEVKSFLANAKSQGERIIWLGDLNVAASWNDVGPNP 231
Query: 204 EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSW 263
+F K + + +D GQPGFT AE+ RF +L+ G LID+YR H E+D + +W
Sbjct: 232 AWFRRQKQSPGL--CDDDVGQPGFTQAEQNRFAELLEAGGLIDSYRQCHHEEDWEKDATW 289
Query: 264 SGNP--------IGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPV- 314
G P G++ GK MRIDY +V E +KD I++ E G G E +GF GSDH P+
Sbjct: 290 RGAPGKPPNPPEFGRFYGKGMRIDYVLVPESMKDDILSVENLGIGKERKGFMGSDHAPLL 349
Query: 315 -SLELSEASSDSE 326
++++S+ + SE
Sbjct: 350 AAIKVSQPAVLSE 362
>gi|401412245|ref|XP_003885570.1| hypothetical protein NCLIV_059670 [Neospora caninum Liverpool]
gi|325119989|emb|CBZ55542.1| hypothetical protein NCLIV_059670 [Neospora caninum Liverpool]
Length = 455
Score = 157 bits (398), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 114/358 (31%), Positives = 164/358 (45%), Gaps = 102/358 (28%)
Query: 12 CSAKKPALSPSKKDGETTETSS--------EENSKKDPLKFVTWNANSLLLRVKNN--WP 61
CS P+ P K+G+ + + +E + PL VTWN NS+ R+++ W
Sbjct: 61 CSEASPSDGPQAKEGQQRKNAEAEREREKRQEQKRTAPLSIVTWNVNSIASRIRDTRQWF 120
Query: 62 EFSNFITTFDPDVIALQILMRALSSPP--------------------------------- 88
FS+F+ +PD++ LQ + A PP
Sbjct: 121 YFSSFLQKVNPDILCLQEVKLAAHGPPGAKRGDGMPRDRSRIKESDKVSSVEAREIREAL 180
Query: 89 ---FKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFY 145
++++ SLAD +Y+G + ++ P+GR+ILAEF F
Sbjct: 181 NTLLPDHKLLISLADWRYSGQMMFIRNDL-----------------PEGRIILAEFSPFC 223
Query: 146 LLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEF 205
+L TY+PNNG + SF+RRR WD+R+ EFV Q KPL+W GDLN + E+ID+S PE
Sbjct: 224 VLTTYSPNNGGTPK--SFERRRLWDERMLEFVTQLK-KPLVWVGDLNCAPEDIDLSDPEQ 280
Query: 206 FAAA---KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS 262
F + +G + P+ + GQ G T AER+RF AIL+ G D L DC F
Sbjct: 281 FRSVIHESADGTIDPD--NIGQAGCTDAERRRFRAILERG--WDQCMCLK-----DC-FG 330
Query: 263 WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 320
SG P G RG MR+D+ + F+GSDHCPV + E
Sbjct: 331 GSG-PRGMLRGLGMRLDH----------------------IANFFGSDHCPVLVRFKE 365
>gi|195620344|gb|ACG32002.1| hypothetical protein [Zea mays]
Length = 207
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 84/198 (42%), Positives = 121/198 (61%), Gaps = 41/198 (20%)
Query: 1 MKRFFKPIEKECSAKKPALSPSKK--DGETTETSS-------EENSKKDPLKFVTWNANS 51
MKRFF+P+ K+ S K L+ + + DG T+ ++ E ++P KF+TWNANS
Sbjct: 1 MKRFFQPVPKDGSPSKKRLAGAAEPGDGPTSAGAATGAGGDVEGRPTEEPFKFLTWNANS 60
Query: 52 LLLRVKNNWPEFSNFITTFDPDVIALQ-------------------------------IL 80
LLLR+K++WP FS + DPDVI +Q ++
Sbjct: 61 LLLRMKSDWPAFSQLVARLDPDVICVQEVRMPAAGSKGAPKNPSELKDDTSLSRDEKQVV 120
Query: 81 MRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAE 140
+RALS+ PFK+Y++WWSL+DSKYAGTA+ +KK F+PKKVSF+L++T+ K+E DGRVI+AE
Sbjct: 121 LRALSASPFKDYRVWWSLSDSKYAGTAMFIKKKFEPKKVSFNLDRTSSKHEADGRVIIAE 180
Query: 141 FETFYLLNTYAPNNGWKE 158
FE+F L + + W E
Sbjct: 181 FESF-LFTEHLFSKQWME 197
>gi|323450905|gb|EGB06784.1| hypothetical protein AURANDRAFT_71945 [Aureococcus anophagefferens]
Length = 1309
Score = 152 bits (383), Expect = 3e-34, Method: Composition-based stats.
Identities = 115/364 (31%), Positives = 170/364 (46%), Gaps = 80/364 (21%)
Query: 38 KKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRA-------------- 83
+ DP + WN +L R N E +F+ DV+ L + A
Sbjct: 24 RGDPRTIICWNVENLKSRATQNRREVRDFLGACGADVVFLSEVKLAAHCDKGAKKGDGAP 83
Query: 84 --------------------LSSPPFKNYQIWWSLADSKYAGTALLVKK-CFQPKKVSFS 122
L PF +SLAD +YAGT L++ P++VSFS
Sbjct: 84 RNRRRVNDKFHDDKVQCAALLDVGPFA--APIYSLADWRYAGTCCLLRSDGPAPRRVSFS 141
Query: 123 LEKT-----------ALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDK 171
LE A ++PDGRVI+ E+ET +L+TY+PNNG + SF+RRR W+
Sbjct: 142 LEPPDAPPARNSVAFADDHDPDGRVIVLEYETLVVLHTYSPNNG--NDAKSFERRRLWEA 199
Query: 172 RIQEF--VLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNK---------- 219
+++ F ++ G+ L++ GDLN + + D+SHP +F A N P K
Sbjct: 200 KVRAFAEAVRVRGRSLVYVGDLNCAPTDDDLSHPAWFRAWNSN---QPGKRLGKDRERLE 256
Query: 220 -EDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCG-----FSWSGNP------ 267
+D GQPG T E + F A+L+ G L DA+R FSW G P
Sbjct: 257 ADDEGQPGCTPRESRYFDALLRAGGLFDAFRDARGAGAGAATIEGPHFSWRGPPGRDGLP 316
Query: 268 -IGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEASSDSE 326
G+Y GK MRID+ +VS + + +C++ G G+ +GF GSDHCP+ L L +++
Sbjct: 317 ETGRYYGKGMRIDHALVSTGVA--VESCDLLGRGVGRDGFMGSDHCPLRLVLRGSAAPGA 374
Query: 327 KREK 330
E+
Sbjct: 375 DDER 378
>gi|149180849|ref|ZP_01859351.1| exodeoxyribonuclease [Bacillus sp. SG-1]
gi|148851368|gb|EDL65516.1| exodeoxyribonuclease [Bacillus sp. SG-1]
Length = 253
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 99/281 (35%), Positives = 148/281 (52%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K V+WN N + VK F +F D D+ +Q L +NY +W+ A
Sbjct: 1 MKIVSWNVNGIRACVKKG---FMDFFKDVDADIFCIQESKLQEGQIQLDLENYHQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K+ +P VS+ + + EP+GR I EFE FYLLN Y PN+ K
Sbjct: 58 ERKGYSGTAVFTKQ--EPLSVSYGIGED--DDEPEGRCITLEFEDFYLLNVYTPNS--KR 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ + + R W++R++ ++ + KP+I+CGDLNV+H EID+ +P
Sbjct: 112 DLSRLEDRLHWEERVRAYIKELDEIKPVIYCGDLNVAHNEIDLRNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + G GFT ER++ +L EG +D++R L+ EKD + WS + R R
Sbjct: 158 -KSNHGNSGFTTEEREKMSTLLNEG-FVDSFRHLYPEKDQSYTW-WSYMSKVRERNIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYFIVS+ LKD + M + GSDHCPV +E+
Sbjct: 215 IDYFIVSDRLKDSLKDAGMHTDVL------GSDHCPVYIEI 249
>gi|308808326|ref|XP_003081473.1| Apurinic/apyrimidinic endonuclease and related enzymes (ISS)
[Ostreococcus tauri]
gi|116059936|emb|CAL55995.1| Apurinic/apyrimidinic endonuclease and related enzymes (ISS)
[Ostreococcus tauri]
Length = 447
Score = 147 bits (371), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 95/267 (35%), Positives = 138/267 (51%), Gaps = 40/267 (14%)
Query: 79 ILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQ-PKKVSFSLEKTALKYEPD---- 133
++ + L PF+ Y + LA +K GT +LVKK + P +V+ +L PD
Sbjct: 169 VMEKMLGGYPFREYDAHFCLAGAKRYGTCVLVKKALKKPIRVARTLALDGTDASPDDIDT 228
Query: 134 --GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKP-LIWCGD 190
GRV+L E+E +LNTY P+NG E +++R WD R++ F+ GK +IW GD
Sbjct: 229 NEGRVLLLEYEKVIVLNTYVPHNGGNPER--WEKRAMWDFRVKRFLTHYKGKKDVIWLGD 286
Query: 191 LNVSHEEIDVS-HPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 249
LN +H ++DV+ PE F G GFT+ ER+RF IL ++DAYR
Sbjct: 287 LNCAHRDLDVAPSPEQFI---------------GVGGFTVPERQRFTDILSTSDMVDAYR 331
Query: 250 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIE------- 302
LH ++ F+W G IG G MR+DYFIV R+ +CE +
Sbjct: 332 ALHGDRQT---FTWRG--IGMGSGLAMRLDYFIVPRTFVHRLKSCETSTDRFDDAVARER 386
Query: 303 -LEGFYGSDHCPVSLELSEA-SSDSEK 327
+ F+GSDHC + L L + +SD+EK
Sbjct: 387 PISCFFGSDHCALYLTLHKRDASDAEK 413
>gi|145351399|ref|XP_001420068.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580301|gb|ABO98361.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 371
Score = 147 bits (370), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 106/351 (30%), Positives = 156/351 (44%), Gaps = 85/351 (24%)
Query: 28 TTETSSEENSKKDPLKFVTWNANSLLLRVKNN----------WPEFSNFITTFDPDVIAL 77
T E +SE PL F +WNAN LL R+++ S + PDVIAL
Sbjct: 6 TVEDASE------PLSFASWNANGLLNRIRDKSDPNGRRTRALLALSENVMRKRPDVIAL 59
Query: 78 Q---------------------------------ILMRALSSPPFKNYQIWWSLADSKYA 104
Q + + PFKNY ++ LA+++ A
Sbjct: 60 QEVWLKCEEMGKGTGKWDHAKMGAEDKKLRDEKAFIEALMGRRPFKNYDAYYCLANARRA 119
Query: 105 GTALLVKKCF-QPKKVSFSLEKTALKYEPD------GRVILAEFETFYLLNTYAPNNGWK 157
G +VKKC +P +V+ +L PD GRV++ E+E +LNTY P+NG
Sbjct: 120 GVITMVKKCLAKPIRVARTLALDGRDVTPDEIDTNEGRVLMLEYEKMIVLNTYVPHNGSN 179
Query: 158 EEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVS-HPEFFAAAKLNGYV 215
E +++R WD R+Q F+ G K ++W GDLNV+H++ DV P F
Sbjct: 180 AER--YEKRALWDFRVQRFLENYRGKKDVVWMGDLNVAHQDHDVGPSPRLFE-------- 229
Query: 216 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 275
G GFT+ ER+RF IL ++D YR + ++ S G + ++G
Sbjct: 230 -------GVGGFTLPERRRFTDILAATDMVDTYRAFNGDRLTYTWRSTRGQGLDGWQG-- 280
Query: 276 MRIDYFIVSEELKDRIIACEMQ--------GHGIELEGFYGSDHCPVSLEL 318
MR+DYF+V +L RI +CE + + F SDHC + L L
Sbjct: 281 MRLDYFVVPRKLVARIKSCETSTDRFDDTTAQSMPMSCFMDSDHCMIHLSL 331
>gi|229086305|ref|ZP_04218483.1| Exodeoxyribonuclease [Bacillus cereus Rock3-44]
gi|228697000|gb|EEL49807.1| Exodeoxyribonuclease [Bacillus cereus Rock3-44]
Length = 252
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 99/283 (34%), Positives = 148/283 (52%), Gaps = 39/283 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPF--KNYQIWWSLA 99
+KF++WN N L + F ++ D D+ LQ + + Y ++W+ A
Sbjct: 1 MKFISWNVNGLRAVIAKG--GFIEYLEETDTDIFCLQEIKLQSGQVDLNPEGYYVYWNYA 58
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+L KK +P V++ L +++ +GR+I EFE FY+L Y PN K
Sbjct: 59 VKKGYSGTAILTKK--EPLSVTYGL--GIEEHDQEGRLITLEFEDFYMLTLYTPNA--KR 112
Query: 159 EENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R KW++ I ++ + K P+I+CGDLNV+H+EID+ +P
Sbjct: 113 GLERLDYRMKWEEDILSYITKLDKKKPVIFCGDLNVAHKEIDLKNP-------------- 158
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
K + PGF+ ERKRF IL EG ID YR+L+ D + +SW + R K +
Sbjct: 159 -KTNRKNPGFSDQERKRFTQILDEG-FIDTYRYLY--PDREGAYSWWSYRMNA-RAKNIG 213
Query: 277 -RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
R+DYFIVSE LKD+I+ ++ + GSDHCPV L +
Sbjct: 214 WRLDYFIVSERLKDKIVDAKINSEVM------GSDHCPVELNM 250
>gi|375309937|ref|ZP_09775215.1| exodeoxyribonuclease [Paenibacillus sp. Aloe-11]
gi|375077890|gb|EHS56120.1| exodeoxyribonuclease [Paenibacillus sp. Aloe-11]
Length = 254
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 97/292 (33%), Positives = 148/292 (50%), Gaps = 48/292 (16%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--------ILMRALSSPPFKNYQ 93
+K ++WN N L V F ++ +PD+ +Q ILM + + Y
Sbjct: 1 MKLISWNVNGLRACVTKG---FYTYLKETNPDIFCVQETKLQEGQILMENM-----EEYT 52
Query: 94 IWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAP 152
+W+ A+ K Y+GTA+ K F+P V + LE+ EP+GR I EFE FYL+N Y P
Sbjct: 53 QYWNYAEKKGYSGTAIFTK--FKPLSVHYGLEENG---EPEGRTITLEFERFYLVNVYTP 107
Query: 153 NNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKL 211
N K + + R +W+ R + ++ Q + KP+I CGDLNV+H+EID+ +
Sbjct: 108 NT--KRDLSRLPYRLEWEDRFRNYLQQLDASKPVIVCGDLNVAHQEIDLKNA-------- 157
Query: 212 NGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKY 271
K ++G GFT ER+R +L G ID +R + ++ D WS P +
Sbjct: 158 -------KANYGNAGFTPEERERMSQLLGAG-FIDTFRHFYPDR-TDVYSWWSYMPKVRE 208
Query: 272 RGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEASS 323
R RIDYF+VS+ L+ +I + H GSDHCPV L++ + S+
Sbjct: 209 RNIGWRIDYFLVSDRLRPLLIDASIDCH------ITGSDHCPVILDMQDISA 254
>gi|310643609|ref|YP_003948367.1| exodeoxyribonuclease iii xth [Paenibacillus polymyxa SC2]
gi|309248559|gb|ADO58126.1| Exodeoxyribonuclease III Xth [Paenibacillus polymyxa SC2]
gi|392304359|emb|CCI70722.1| exodeoxyribonuclease III [Paenibacillus polymyxa M1]
Length = 254
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 97/292 (33%), Positives = 145/292 (49%), Gaps = 48/292 (16%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--------ILMRALSSPPFKNYQ 93
+K ++WN N L V F ++ D D+ +Q ILM + + Y
Sbjct: 1 MKLISWNVNGLRACVTKG---FYTYLKETDADIFCVQETKLQEGQILMENM-----EEYA 52
Query: 94 IWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAP 152
+W+ A+ K Y+GTA+ K +P V + LE+ EP+GR I EFE FYL+N Y P
Sbjct: 53 QYWNYAEKKGYSGTAIFTK--IKPLSVHYGLEENE---EPEGRTITLEFEKFYLVNVYTP 107
Query: 153 NNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKL 211
N K + + R +W+ R + ++ Q KP+I CGDLNV+H+EID+ +
Sbjct: 108 NT--KRDLSRLPYRLEWEDRFRSYLQQLDAQKPVIICGDLNVAHQEIDLKNA-------- 157
Query: 212 NGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKY 271
K ++G GFT ER R +L G ID +R+ + ++ D WS P +
Sbjct: 158 -------KANYGNAGFTPEERDRMSQLLNAG-FIDTFRYFYPDR-TDVYSWWSYMPKVRE 208
Query: 272 RGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEASS 323
R RIDYF+VSE L+ ++ + H GSDHCPV L+L + S+
Sbjct: 209 RNIGWRIDYFLVSERLRPLLMDASIDCH------ITGSDHCPVILDLQDISA 254
>gi|443711514|gb|ELU05263.1| hypothetical protein CAPTEDRAFT_159745 [Capitella teleta]
Length = 307
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 107/319 (33%), Positives = 165/319 (51%), Gaps = 46/319 (14%)
Query: 15 KKPALSPSKK----DGETTETSSE---ENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFI 67
KK A +PSK+ D + SSE ++ KK LKF +WN N + V+ N +++
Sbjct: 20 KKLARTPSKRESIPDVSGNDYSSEAATKDGKKWNLKFSSWNVNGIRAWVEKNG---HSYV 76
Query: 68 TTFDPDVIALQILMRALSSPP----FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFS 122
T DPD+ +Q A P + Y +W D Y+GT L K+ +P V++
Sbjct: 77 TAEDPDIFCVQETKCAKDLIPDDANIEGYHAYWLSGDKDGYSGTGLYSKQ--EPLSVTYG 134
Query: 123 LEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG 182
++K +++ +GRVI AEF+ FY + Y PN G S+ R KWD +E++
Sbjct: 135 IDKE--EHDKEGRVITAEFDKFYFVTAYVPNAGRGLPRLSY-RSEKWDPDFREYLKNLDA 191
Query: 183 K-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 241
K P++ CGDLNV+H+EID+++P K + GFT ER+ F +L+
Sbjct: 192 KKPVVMCGDLNVAHKEIDIANP---------------KSNKKSAGFTPQERQGFSELLEA 236
Query: 242 GRLIDAYRFLHKEKDMDCGF-SWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHG 300
G +DA+R L+ E+ + ++ GN GK G R+DYF+VSE++KD I ++
Sbjct: 237 G-FVDAFRELYPEETKKYSYWTYMGNARGKNVG--WRLDYFVVSEKIKDGICDSLIRSE- 292
Query: 301 IELEGFYGSDHCPVSLELS 319
GSDHCPV L ++
Sbjct: 293 -----VMGSDHCPVVLLMN 306
>gi|324515683|gb|ADY46281.1| Recombination repair protein 1 [Ascaris suum]
Length = 378
Score = 140 bits (354), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 107/326 (32%), Positives = 164/326 (50%), Gaps = 44/326 (13%)
Query: 8 IEKECSAKK--PAL--SPSKKDGETTETSSEE----NSKKDPLKFVTWNANSLLLRVKNN 59
+EK+ S KK P + S K E ET EE +S PL +TWN L VK
Sbjct: 82 VEKKASPKKKVPRIKKQSSMKVDEQNETEVEESVVDDSANRPLTIITWNVAGLRALVKK- 140
Query: 60 WPEFSNFITTFDPDVIALQILMRALSSP---PFKNYQ--IWWSLADSKYAGTALLVKKCF 114
+ FIT+ D++ LQ + P P K ++ + + + +AG LL K+
Sbjct: 141 --DACRFITSDKADIVLLQ-ETKCAEVPTGFPVKGFKAFVGENPGKTGHAGVILLSKQ-- 195
Query: 115 QPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQ 174
+P KV LE + +GR+I+AE++ FYL+N Y PN+G + +R+ WD
Sbjct: 196 KPIKVQTKLENVPEELGVEGRLIVAEYDKFYLINAYVPNSG--RGLVNLAKRKIWDDFFI 253
Query: 175 EFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERK 233
+++ Q + K +I+ GDLNV+HEEID+++P+ N+ GFT ER
Sbjct: 254 DYIKQLDASKAVIYAGDLNVAHEEIDLANPK------------TNRNKTA--GFTDQERG 299
Query: 234 RFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIA 293
F +L+ G +D YR LH +K F WS + R+DYF+VSE L D+++
Sbjct: 300 DFTRLLQAG-FVDVYRSLHPDKTGAYTF-WSTMHNARATNIGWRLDYFVVSERLMDKVVK 357
Query: 294 CEMQGHGIELEGFYGSDHCPVSLELS 319
CE+ GSDHCP++L+++
Sbjct: 358 CEINSR------VMGSDHCPLTLQIN 377
>gi|302876908|ref|YP_003845541.1| exodeoxyribonuclease III Xth [Clostridium cellulovorans 743B]
gi|307687596|ref|ZP_07630042.1| exodeoxyribonuclease III Xth [Clostridium cellulovorans 743B]
gi|302579765|gb|ADL53777.1| exodeoxyribonuclease III Xth [Clostridium cellulovorans 743B]
Length = 253
Score = 140 bits (354), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 90/279 (32%), Positives = 148/279 (53%), Gaps = 36/279 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N + V+ F +F + D D+ LQ L + + Y+ +W+ A
Sbjct: 1 MKLISWNVNGIRACVEKG---FLDFFKSVDADIFCLQETKLQQGQIDLDLEGYEQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K+ +P S+ L +++ +GRVI E++ FYL+ Y PN+ KE
Sbjct: 58 EKKGYSGTAVFTKE--KPLSASYGL--NIEEHDKEGRVITLEYDDFYLVTVYTPNS--KE 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E + R +W+ + ++ + KP+I CGDLNV+H+EID+ +P
Sbjct: 112 ELARLEYRMEWEDAFRAYLKKLEKNKPVIVCGDLNVAHKEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + PGF+ ER +F +L G ID YR+ + +K+ + WS + + R
Sbjct: 158 -KTNRKNPGFSDEERAKFSELLASG-FIDTYRYFYPDKEGAYSW-WSYRFNARTKNAGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
IDYF++SEELKD++++ E+ + GSDHCPV L
Sbjct: 215 IDYFVISEELKDKLVSAEIHNEIL------GSDHCPVEL 247
>gi|374319924|ref|YP_005073053.1| exodeoxyribonuclease III [Paenibacillus terrae HPL-003]
gi|357198933|gb|AET56830.1| exodeoxyribonuclease III [Paenibacillus terrae HPL-003]
Length = 254
Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 95/292 (32%), Positives = 147/292 (50%), Gaps = 48/292 (16%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--------ILMRALSSPPFKNYQ 93
+K ++WN N L V F ++ +PD+ +Q ILM + + Y
Sbjct: 1 MKLISWNVNGLRACVTKG---FYTYLKETNPDIFCVQETKLQEGQILMENM-----EEYT 52
Query: 94 IWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAP 152
+W+ A+ K Y+GTA+ K +P V + LE+ EP+GR I EFE FYL+N Y P
Sbjct: 53 QYWNYAEKKGYSGTAIFTK--IKPLSVHYGLEENG---EPEGRTITLEFEKFYLVNVYTP 107
Query: 153 NNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKL 211
N K + + R +W+ R + ++ Q + KP+I CGDLNV+H+EID+ +
Sbjct: 108 NT--KRDLSRLPYRLEWEDRFRSYLQQLDASKPVIVCGDLNVAHQEIDLKNA-------- 157
Query: 212 NGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKY 271
K ++G GFT ER+R +L G ID +R + ++ + WS P +
Sbjct: 158 -------KANYGNAGFTPEERERMSQLLGAG-FIDTFRHFYPDR-TEVYSWWSYMPKVRE 208
Query: 272 RGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEASS 323
R RIDYF+VS+ L+ +I + H GSDHCPV L++ + S+
Sbjct: 209 RNIGWRIDYFLVSDRLRPLLIDASIDCH------ITGSDHCPVILDMQDISA 254
>gi|390455653|ref|ZP_10241181.1| exodeoxyribonuclease III [Paenibacillus peoriae KCTC 3763]
Length = 254
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 95/292 (32%), Positives = 147/292 (50%), Gaps = 48/292 (16%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--------ILMRALSSPPFKNYQ 93
+K ++WN N L V F ++ +PD+ +Q ILM + + Y
Sbjct: 1 MKLISWNVNGLRACVTKG---FYTYLKETNPDIFCVQETKLQEGQILMENM-----EEYT 52
Query: 94 IWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAP 152
+W+ A+ K Y+GTA+ K +P V + LE+ EP+GR I EFE FYL+N Y P
Sbjct: 53 QYWNYAEKKGYSGTAIFTK--IKPLSVHYGLEENG---EPEGRTITLEFEKFYLVNVYTP 107
Query: 153 NNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKL 211
N K + + R +W+ R + ++ Q + KP+I CGDLNV+H+EID+ +
Sbjct: 108 NT--KRDLSRLPYRLEWEDRFRSYLQQLDASKPVIICGDLNVAHQEIDLKNA-------- 157
Query: 212 NGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKY 271
K ++G GFT ER+R +L G ID +R + ++ + WS P +
Sbjct: 158 -------KANYGNAGFTPEERERMSQLLGAG-FIDTFRHFYPDR-TEVYSWWSYMPKVRE 208
Query: 272 RGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEASS 323
R RIDYF+VS+ L+ +I + H GSDHCPV L++ + S+
Sbjct: 209 RNIGWRIDYFLVSDRLRPLLIDASIDCH------ITGSDHCPVILDMQDISA 254
>gi|402574713|ref|YP_006624056.1| exodeoxyribonuclease III [Desulfosporosinus meridiei DSM 13257]
gi|402255910|gb|AFQ46185.1| exodeoxyribonuclease III [Desulfosporosinus meridiei DSM 13257]
Length = 251
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 95/283 (33%), Positives = 146/283 (51%), Gaps = 36/283 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPF--KNYQIWWSLA 99
+K ++WN N + VKN F +F + D+ LQ PF + Y +W+ A
Sbjct: 1 MKLISWNVNGIRACVKNG---FLDFFQKENADIFCLQETKVQADQIPFNLEGYYQYWNFA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ KK +P K+ + + + +++ +GRVI EFE Y++ Y PN+ +
Sbjct: 58 QKKGYSGTAIFTKK--EPMKICYGIGQE--EHDKEGRVITLEFEKHYVVTVYTPNS--QR 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R KW++ +F+ KP+I+CGDLNV+HEEID+ +P
Sbjct: 112 GLARLEYRMKWEEEFLKFIKDLEKNKPVIFCGDLNVAHEEIDLKNP------------SS 159
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
N+++ GF++ ER +FG I+K G ID +R+ + +K + WS + R
Sbjct: 160 NRKN---AGFSMEERNKFGEIIKSG-FIDTFRYFYPDK-TNAYTWWSYMFNARVNNAGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 320
IDYF VSE LKDR+ A + GSDHCPV LE+ E
Sbjct: 215 IDYFCVSEILKDRLKA------AVIYNDVMGSDHCPVGLEMEE 251
>gi|218231608|ref|YP_002368543.1| exodeoxyribonuclease III [Bacillus cereus B4264]
gi|218159565|gb|ACK59557.1| exodeoxyribonuclease III [Bacillus cereus B4264]
Length = 252
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 93/284 (32%), Positives = 149/284 (52%), Gaps = 39/284 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + EF ++ D+ LQ L + Y +W+ A
Sbjct: 1 MKLISWNVNGLRAVIAKG--EFLEYLEESSADIFCLQEIKLQEGQIDLNLEGYYTYWNYA 58
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ KK +P V++ L+ +++ +GR+I EFE FY++ Y PN+ K
Sbjct: 59 VKKGYSGTAIFSKK--EPLSVTYGLDIE--EHDQEGRLITLEFEDFYMITLYTPNS--KR 112
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R KW+ + ++ + KP+I+CGDLNV+H+EID+ +P
Sbjct: 113 GLERLDYRMKWEDDFRSYIKRLDEKKPVIFCGDLNVAHKEIDLKNP-------------- 158
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
K + PGF+ ER++F +IL+EG ID YR+L+ D + +SW +G R K +
Sbjct: 159 -KSNRKNPGFSDEEREKFSSILEEG-FIDTYRYLY--PDQEGAYSWWSYRMGA-RAKNIG 213
Query: 277 -RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
R+DYF+VSE +KD+I ++ + GSDHCPV L ++
Sbjct: 214 WRLDYFVVSERMKDQITEAKINSEVM------GSDHCPVELHIN 251
>gi|308070428|ref|YP_003872033.1| exodeoxyribonuclease [Paenibacillus polymyxa E681]
gi|305859707|gb|ADM71495.1| Exodeoxyribonuclease [Paenibacillus polymyxa E681]
Length = 254
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 96/292 (32%), Positives = 145/292 (49%), Gaps = 48/292 (16%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--------ILMRALSSPPFKNYQ 93
+K ++WN N L V F ++ + D+ +Q ILM + + Y
Sbjct: 1 MKLISWNVNGLRACVTKG---FYTYLKETNADIFCVQETKLQEGQILMENM-----EEYT 52
Query: 94 IWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAP 152
+W+ A+ K Y+GTA+ K +P V + LE+ EP+GR I EFE FYL+N Y P
Sbjct: 53 QYWNYAEKKGYSGTAIFTK--IKPLSVHYGLEENE---EPEGRTITLEFENFYLVNVYTP 107
Query: 153 NNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKL 211
N K + + R +W+ R + ++ Q KP+I CGDLNV+H+EID+ +
Sbjct: 108 NT--KRDLSRLPYRLEWEDRFRSYLQQLDALKPVIVCGDLNVAHQEIDLKNA-------- 157
Query: 212 NGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKY 271
K ++G GFT ER+R +L G ID +R + ++ D WS P +
Sbjct: 158 -------KANYGNAGFTPEERERMSLLLDAG-FIDTFRTFYPDR-TDVYSWWSYMPKVRE 208
Query: 272 RGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEASS 323
R RIDYF+VSE L+ ++ + H GSDHCPV L+L + S+
Sbjct: 209 RNIGWRIDYFLVSERLRPLLMDASIDCH------ITGSDHCPVILDLQDISA 254
>gi|407473575|ref|YP_006787975.1| exodeoxyribonuclease III [Clostridium acidurici 9a]
gi|407050083|gb|AFS78128.1| exodeoxyribonuclease III [Clostridium acidurici 9a]
Length = 250
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 95/281 (33%), Positives = 146/281 (51%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N + VK F ++ T D D+ LQ L + + Y+ +W+ A
Sbjct: 1 MKLISWNVNGIRACVKKG---FLDYFTDIDADIFCLQETKLQEGQINLELEGYEQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ K+ +P +V + L +++ +GRVI EFE FYL+N Y PN+ +
Sbjct: 58 VKKGYSGTAIFTKQ--KPIEVKYGL--GIEEHDQEGRVITLEFEDFYLVNVYTPNS--QS 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R KW+ +E++ KP+I CGDLNV+H+EID+ +P
Sbjct: 112 ELARLDYRMKWEDIFREYLKDLDNIKPVILCGDLNVAHKEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GFT ER + +L+ G D++R+L+ EK+ + WS + R
Sbjct: 158 -KTNRKNAGFTDEERNKMTELLESG-FTDSFRYLYPEKEGSYSW-WSYMRKARENNSGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYFIVSE++KD+I ++ + GSDHCPV LEL
Sbjct: 215 IDYFIVSEKMKDKIKDAQIHSN------IMGSDHCPVMLEL 249
>gi|337746485|ref|YP_004640647.1| ExoA protein [Paenibacillus mucilaginosus KNP414]
gi|336297674|gb|AEI40777.1| ExoA [Paenibacillus mucilaginosus KNP414]
Length = 259
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 94/291 (32%), Positives = 141/291 (48%), Gaps = 37/291 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K V+WN N L V FS + D D+ +Q L + + +Y +W+ A
Sbjct: 1 MKLVSWNVNGLRACVNKG---FSEYFAQTDADIFCVQETKLQEGQIALDYPDYHQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K +P V + LE+ + EP+GR+I EF+ FYL+ Y PN K
Sbjct: 58 EKKGYSGTAVFTK--VKPLSVRYGLEEDS---EPEGRIITLEFDGFYLVTVYTPNA--KR 110
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ + R +W+ R + ++ KP+I CGDLNV+HEEID+ +
Sbjct: 111 DLSRLDYRLEWEDRFRRYIAGLDAVKPVILCGDLNVAHEEIDLKNA-------------- 156
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + G GFT ER++ +L G ID +R + E+ D WS P + R R
Sbjct: 157 -KGNRGNSGFTAEERQKMTDLLGAG-FIDTFRHFYPEQ-TDAYTWWSNMPKVRERNVGWR 213
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEASSDSEKR 328
IDYF+ S L + ++ H + GSDHCPV L L+E + R
Sbjct: 214 IDYFLASARLAPSLQDAQIHAHVL------GSDHCPVVLTLAEVPQAAAAR 258
>gi|75759849|ref|ZP_00739924.1| Exodeoxyribonuclease III [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|228902244|ref|ZP_04066404.1| Exodeoxyribonuclease [Bacillus thuringiensis IBL 4222]
gi|228966664|ref|ZP_04127710.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar sotto str.
T04001]
gi|402558959|ref|YP_006601683.1| exodeoxyribonuclease III [Bacillus thuringiensis HD-771]
gi|423359274|ref|ZP_17336777.1| exodeoxyribonuclease [Bacillus cereus VD022]
gi|423561854|ref|ZP_17538130.1| exodeoxyribonuclease [Bacillus cereus MSX-A1]
gi|434376797|ref|YP_006611441.1| exodeoxyribonuclease III [Bacillus thuringiensis HD-789]
gi|74492665|gb|EAO55806.1| Exodeoxyribonuclease III [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|228793040|gb|EEM40596.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar sotto str.
T04001]
gi|228857359|gb|EEN01859.1| Exodeoxyribonuclease [Bacillus thuringiensis IBL 4222]
gi|401085146|gb|EJP93392.1| exodeoxyribonuclease [Bacillus cereus VD022]
gi|401202111|gb|EJR08976.1| exodeoxyribonuclease [Bacillus cereus MSX-A1]
gi|401787611|gb|AFQ13650.1| exodeoxyribonuclease III [Bacillus thuringiensis HD-771]
gi|401875354|gb|AFQ27521.1| exodeoxyribonuclease III [Bacillus thuringiensis HD-789]
Length = 252
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 93/284 (32%), Positives = 148/284 (52%), Gaps = 39/284 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F ++ + D+ LQ L + Y +W+ A
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKLQSGQIDLNLEGYYTYWNYA 58
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ KK +P V++ LE +++ +GR+I EFE FY++ Y PN+ K
Sbjct: 59 VKKGYSGTAIFTKK--EPLSVTYGLEIE--EHDQEGRLITLEFEDFYMITLYTPNS--KR 112
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R KW+ + ++ + KP+I+CGDLNV+H+EID+ +P
Sbjct: 113 GLERLDYRMKWEDDFRSYIKRLDEKKPVIFCGDLNVAHKEIDLKNP-------------- 158
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
K + PGF+ ER++F IL+EG ID YR+L+ D + +SW +G R K +
Sbjct: 159 -KSNRKNPGFSDEEREKFTCILEEG-FIDTYRYLY--SDQEGAYSWWSYRMGA-RAKNIG 213
Query: 277 -RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
R+DYF+VSE +KD+I ++ + GSDHCPV L ++
Sbjct: 214 WRLDYFVVSERMKDQITEAKINSEVM------GSDHCPVELHIN 251
>gi|291457988|ref|ZP_06597378.1| exodeoxyribonuclease III [Oribacterium sp. oral taxon 078 str.
F0262]
gi|291419320|gb|EFE93039.1| exodeoxyribonuclease III [Oribacterium sp. oral taxon 078 str.
F0262]
Length = 272
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 104/292 (35%), Positives = 153/292 (52%), Gaps = 42/292 (14%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLAD 100
K ++WN N L + + S+F D DV LQ L + +Y +W+ A+
Sbjct: 4 KLISWNVNGLRAVLGKTF--LSDF-HALDADVFCLQETKLQEGQAELSLPDYHQYWNYAE 60
Query: 101 SK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEE 159
K Y+GTAL K+ +P VS+ + +++ +GRVI AEF Y+L Y PN+
Sbjct: 61 KKGYSGTALFSKE--EPLSVSYGI--GIPEHDREGRVISAEFPDCYILTVYVPNS----- 111
Query: 160 ENSFQR---RRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 215
+N QR R +W+ +E++L KP+I+CGDLNV+H+EID+ +P A+ N
Sbjct: 112 QNELQRLSYRMEWEDAFREYILSLEEKKPVIYCGDLNVAHQEIDLKNP---ASNHHNA-- 166
Query: 216 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 275
GFT ER +F +L G L D++RFLH E + D WS + R
Sbjct: 167 ----------GFTDDERAKFSRLLDCGYL-DSFRFLHPE-ERDAYSWWSYRTKARERNVG 214
Query: 276 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEASSDSEK 327
RIDYF+VSE+L++RI +G I E GSDHCPV L+L+ +E+
Sbjct: 215 WRIDYFVVSEKLRERI-----RGASIHPE-IMGSDHCPVELDLAVCPEGAER 260
>gi|226467620|emb|CAX69686.1| APEX nuclease [Schistosoma japonicum]
Length = 319
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 96/283 (33%), Positives = 140/283 (49%), Gaps = 36/283 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ----ILMRALSSPPFKNYQIWWS 97
LK V+WN N + +KN E+ I + D+ +Q L + S +YQ +WS
Sbjct: 65 LKLVSWNVNGIRAVIKNGGMEY---IKKENADIFCIQETKCPLHKIPSEAKLPSYQSFWS 121
Query: 98 LAD-SKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 156
AD + YAGTAL K PKKV++ + + ++ +GRVI AEF+ FYL+ Y PN G
Sbjct: 122 SADKAGYAGTALFSK--IAPKKVTYGIGRKV--HDEEGRVITAEFDRFYLVTAYVPNAGQ 177
Query: 157 KEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 215
+ R ++WD E++ + KP+I CGDLNV+HEEID++ P+
Sbjct: 178 GLARLPY-REKEWDPDFLEYLRKLDATKPVIVCGDLNVAHEEIDLARPD----------- 225
Query: 216 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 275
+ GFT ER F +L LID YR + ++ F WS +
Sbjct: 226 ----TNHKTAGFTDQERSGFTKLLSSANLIDTYRHFYPDRREAYSF-WSYRTGARLINNG 280
Query: 276 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
R+DYF+VS+ + + E++ G GSDHCPV L L
Sbjct: 281 WRLDYFLVSQRILANVGDQEIRC------GVTGSDHCPVVLYL 317
>gi|365155344|ref|ZP_09351722.1| exodeoxyribonuclease III (xth) [Bacillus smithii 7_3_47FAA]
gi|363628500|gb|EHL79253.1| exodeoxyribonuclease III (xth) [Bacillus smithii 7_3_47FAA]
Length = 254
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 94/286 (32%), Positives = 146/286 (51%), Gaps = 40/286 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K V+WN N L V+ F ++ D D+ +Q L K Y +W+ A
Sbjct: 1 MKLVSWNVNGLRACVRKG---FLDYFQEVDADIFCVQETKLQSGQIELDLKGYHQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K+ +P V + L ++ EP+GR+I EF FYL+N Y PN+ +
Sbjct: 58 EKKGYSGTAVFTKE--EPLSVHYGL--GDVENEPEGRIITLEFPKFYLVNVYTPNS--QR 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R +W+ RI+ +++ KP++ CGDLNV+H+EID+ +P
Sbjct: 112 DLARLPYRLEWEDRIRSYLIDLDKDKPVLLCGDLNVAHQEIDLRNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
K + G GFT ER + +L G ID +R+ + EK + ++W + I K R + +
Sbjct: 158 -KSNQGNSGFTKEERAKMSELLNAG-FIDTFRYFYPEK--EGAYTW-WSYINKARERNIG 212
Query: 277 -RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEA 321
RIDYFI S+ L + I E+ H GSDHCP+ LEL +
Sbjct: 213 WRIDYFIASKRLANIIKNAEIHSH------IMGSDHCPIVLELDSS 252
>gi|379720396|ref|YP_005312527.1| ExoA protein [Paenibacillus mucilaginosus 3016]
gi|386722997|ref|YP_006189323.1| exodeoxyribonuclease III [Paenibacillus mucilaginosus K02]
gi|378569068|gb|AFC29378.1| ExoA [Paenibacillus mucilaginosus 3016]
gi|384090122|gb|AFH61558.1| exodeoxyribonuclease III [Paenibacillus mucilaginosus K02]
Length = 259
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 93/284 (32%), Positives = 139/284 (48%), Gaps = 37/284 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K V+WN N L V FS + D D+ +Q L + + +Y +W+ A
Sbjct: 1 MKLVSWNVNGLRACVNKG---FSEYFAQTDADIFCVQETKLQEGQIALDYPDYHQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K +P V + LE+ + EP+GR+I EF+ FYL+ Y PN K
Sbjct: 58 EKKGYSGTAVFTK--VKPLSVRYGLEEDS---EPEGRIITLEFDGFYLVTVYTPNA--KR 110
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ + R +W+ R + ++ KP+I CGDLNV+HEEID+ +
Sbjct: 111 DLSRLDYRLEWEDRFRRYIAGLDAVKPVILCGDLNVAHEEIDLKNA-------------- 156
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + G GFT ER++ +L G ID +R + E+ D WS P + R R
Sbjct: 157 -KGNRGNSGFTAEERQKMTDLLGAG-FIDTFRHFYPEQ-TDAYTWWSNMPKVRERNVGWR 213
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEA 321
IDYF+ S L + ++ H + GSDHCPV L L+E
Sbjct: 214 IDYFLASARLAPSLQDAQIHAHVL------GSDHCPVVLTLAEV 251
>gi|229197850|ref|ZP_04324566.1| Exodeoxyribonuclease [Bacillus cereus m1293]
gi|228585568|gb|EEK43670.1| Exodeoxyribonuclease [Bacillus cereus m1293]
Length = 252
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 94/284 (33%), Positives = 149/284 (52%), Gaps = 39/284 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+KF++WN N L + F ++ + D+ LQ L + Y +W+ A
Sbjct: 1 MKFISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKLQEGQIDLNVEGYYTYWNYA 58
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ K+ +P V++ L +++ +GRVI EFE FY++ Y PN+ K
Sbjct: 59 VKKGYSGTAIFSKE--EPLSVTYGL--GIEEHDQEGRVITLEFEDFYIITLYTPNS--KR 112
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R KW+ + ++ + KP+I+CGDLNV+H+EID+ +P
Sbjct: 113 GLERLDYRMKWEDDFRVYIKRLDEKKPVIFCGDLNVAHKEIDLKNP-------------- 158
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
K + PGF+ ER++F IL+EG ID YR+L+ D + +SW +G R K +
Sbjct: 159 -KSNRKNPGFSDEEREKFTCILEEG-FIDTYRYLY--PDQEGAYSWWSYRMGA-RAKNIG 213
Query: 277 -RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
R+DYF+VSE +KD+I A ++ + GSDHCPV L ++
Sbjct: 214 WRLDYFVVSERMKDQITAAKINSEVM------GSDHCPVELHIN 251
>gi|218898840|ref|YP_002447251.1| exodeoxyribonuclease III [Bacillus cereus G9842]
gi|218542018|gb|ACK94412.1| exodeoxyribonuclease III [Bacillus cereus G9842]
Length = 252
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 92/284 (32%), Positives = 148/284 (52%), Gaps = 39/284 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQIL--MRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F ++ + D+ LQ + + Y +W+ A
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKVQSGQIDLNLEGYYTYWNYA 58
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ KK +P V++ LE +++ +GR+I EFE FY++ Y PN+ K
Sbjct: 59 VKKGYSGTAIFTKK--EPLSVTYGLEIE--EHDQEGRLITLEFEDFYMITLYTPNS--KR 112
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R KW+ + ++ + KP+I+CGDLNV+H+EID+ +P
Sbjct: 113 GLERLDYRMKWEDDFRSYIKRLDEKKPVIFCGDLNVAHKEIDLKNP-------------- 158
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
K + PGF+ ER++F IL+EG ID YR+L+ D + +SW +G R K +
Sbjct: 159 -KSNRKNPGFSDEEREKFTCILEEG-FIDTYRYLY--SDQEGAYSWWSYRMGA-RAKNIG 213
Query: 277 -RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
R+DYF+VSE +KD+I ++ + GSDHCPV L ++
Sbjct: 214 WRLDYFVVSERMKDQITEAKINSEVM------GSDHCPVELHIN 251
>gi|319652957|ref|ZP_08007062.1| exodeoxyribonuclease III [Bacillus sp. 2_A_57_CT2]
gi|317395306|gb|EFV76039.1| exodeoxyribonuclease III [Bacillus sp. 2_A_57_CT2]
Length = 251
Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 96/281 (34%), Positives = 145/281 (51%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K V+WN N + VK F ++ D D+ +Q L + Y +W+ A
Sbjct: 1 MKLVSWNVNGIRACVKKG---FMDYFKEVDADIFCIQESKLQEGQIELILEGYHQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ KK +P V + L + EP+GR++ E+E FYL+N Y PN+ +
Sbjct: 58 IKKGYSGTAVFTKK--EPLSVRYGLGDN--ETEPEGRILTLEYEGFYLVNVYTPNS--QR 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R +W++RI+E++L KP+I CGDLNV+H EID+ +
Sbjct: 112 DLARLPYRLEWEERIREYLLGLDQIKPVIMCGDLNVAHFEIDLKNA-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + G GFT ER + +L G +DA+R+ + E + + WS + R R
Sbjct: 158 -KSNRGNSGFTDEERGKMTRLLGSG-FVDAFRYKYPEAEGAYTW-WSYMAKVRERNIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYFIVSE+LK+RI+ ++ GSDHCPV+LEL
Sbjct: 215 IDYFIVSEKLKERILDSQIHCD------IMGSDHCPVALEL 249
>gi|169334284|ref|ZP_02861477.1| hypothetical protein ANASTE_00682 [Anaerofustis stercorihominis DSM
17244]
gi|169259001|gb|EDS72967.1| exodeoxyribonuclease III [Anaerofustis stercorihominis DSM 17244]
Length = 251
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 96/282 (34%), Positives = 146/282 (51%), Gaps = 38/282 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K VTWN N L V F +F D D+ ++Q L + Y+ +W A
Sbjct: 1 MKLVTWNVNGLRACVNKG---FMDFFNEVDSDIFSVQETKLQKGQIEMDIPGYEEYWDYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA K +P V LE+ K+ +GRVI AE+E FYL+N Y PN+ +
Sbjct: 58 EKKGYSGTATFSK--IKPISVKTGLEEE--KFSKEGRVITAEYENFYLVNVYTPNS--QN 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R +W+ +++ + KP+I CGDLNV+H EID+ +P+
Sbjct: 112 ELKRLDYRMEWEDYFADYLCELDKVKPVIMCGDLNVAHREIDLKNPK------------T 159
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
NK++ GFTI ER + ++LK G +D+YR+L+ D++ ++ WS +
Sbjct: 160 NKKN---AGFTIEERDKMTSLLKRG-FVDSYRYLY--PDIEGVYTWWSYRFNARKNNAGW 213
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYFIVS+ +KD+I ++ GSDHCPV L++
Sbjct: 214 RIDYFIVSDRIKDKIKDVKI------FSDVMGSDHCPVLLDI 249
>gi|30263740|ref|NP_846117.1| exodeoxyribonuclease III [Bacillus anthracis str. Ames]
gi|47529159|ref|YP_020508.1| exodeoxyribonuclease III [Bacillus anthracis str. 'Ames Ancestor']
gi|49186585|ref|YP_029837.1| exodeoxyribonuclease III [Bacillus anthracis str. Sterne]
gi|65321063|ref|ZP_00394022.1| COG0708: Exonuclease III [Bacillus anthracis str. A2012]
gi|118478961|ref|YP_896112.1| exodeoxyribonuclease III [Bacillus thuringiensis str. Al Hakam]
gi|165872421|ref|ZP_02217056.1| exodeoxyribonuclease III [Bacillus anthracis str. A0488]
gi|167639873|ref|ZP_02398142.1| exodeoxyribonuclease III [Bacillus anthracis str. A0193]
gi|170706859|ref|ZP_02897317.1| exodeoxyribonuclease III [Bacillus anthracis str. A0389]
gi|177652038|ref|ZP_02934584.1| exodeoxyribonuclease III [Bacillus anthracis str. A0174]
gi|190568466|ref|ZP_03021373.1| exodeoxyribonuclease III [Bacillus anthracis str. Tsiankovskii-I]
gi|196034121|ref|ZP_03101531.1| exodeoxyribonuclease III [Bacillus cereus W]
gi|196038388|ref|ZP_03105697.1| exodeoxyribonuclease III [Bacillus cereus NVH0597-99]
gi|196044665|ref|ZP_03111900.1| exodeoxyribonuclease III [Bacillus cereus 03BB108]
gi|218904866|ref|YP_002452700.1| exodeoxyribonuclease III [Bacillus cereus AH820]
gi|225865717|ref|YP_002751095.1| exodeoxyribonuclease III [Bacillus cereus 03BB102]
gi|227813360|ref|YP_002813369.1| exodeoxyribonuclease III [Bacillus anthracis str. CDC 684]
gi|228916370|ref|ZP_04079939.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar pulsiensis
BGSC 4CC1]
gi|228928786|ref|ZP_04091820.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228935036|ref|ZP_04097866.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar andalousiensis
BGSC 4AW1]
gi|228947401|ref|ZP_04109692.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar monterrey BGSC
4AJ1]
gi|229092775|ref|ZP_04223913.1| Exodeoxyribonuclease [Bacillus cereus Rock3-42]
gi|229123254|ref|ZP_04252458.1| Exodeoxyribonuclease [Bacillus cereus 95/8201]
gi|229185967|ref|ZP_04313138.1| Exodeoxyribonuclease [Bacillus cereus BGSC 6E1]
gi|229603277|ref|YP_002867975.1| exodeoxyribonuclease III [Bacillus anthracis str. A0248]
gi|254721165|ref|ZP_05182956.1| exodeoxyribonuclease III [Bacillus anthracis str. A1055]
gi|254735775|ref|ZP_05193481.1| exodeoxyribonuclease III [Bacillus anthracis str. Western North
America USA6153]
gi|254751095|ref|ZP_05203134.1| exodeoxyribonuclease III [Bacillus anthracis str. Vollum]
gi|254759412|ref|ZP_05211437.1| exodeoxyribonuclease III [Bacillus anthracis str. Australia 94]
gi|376267630|ref|YP_005120342.1| Exodeoxyribonuclease III [Bacillus cereus F837/76]
gi|386737557|ref|YP_006210738.1| Exodeoxyribonuclease III [Bacillus anthracis str. H9401]
gi|421510574|ref|ZP_15957465.1| exodeoxyribonuclease III [Bacillus anthracis str. UR-1]
gi|30258384|gb|AAP27603.1| exodeoxyribonuclease III [Bacillus anthracis str. Ames]
gi|47504307|gb|AAT32983.1| exodeoxyribonuclease III [Bacillus anthracis str. 'Ames Ancestor']
gi|49180512|gb|AAT55888.1| exodeoxyribonuclease III [Bacillus anthracis str. Sterne]
gi|118418186|gb|ABK86605.1| exodeoxyribonuclease III [Bacillus thuringiensis str. Al Hakam]
gi|164711859|gb|EDR17401.1| exodeoxyribonuclease III [Bacillus anthracis str. A0488]
gi|167512274|gb|EDR87651.1| exodeoxyribonuclease III [Bacillus anthracis str. A0193]
gi|170128277|gb|EDS97146.1| exodeoxyribonuclease III [Bacillus anthracis str. A0389]
gi|172082407|gb|EDT67472.1| exodeoxyribonuclease III [Bacillus anthracis str. A0174]
gi|190560470|gb|EDV14448.1| exodeoxyribonuclease III [Bacillus anthracis str. Tsiankovskii-I]
gi|195993195|gb|EDX57153.1| exodeoxyribonuclease III [Bacillus cereus W]
gi|196024700|gb|EDX63372.1| exodeoxyribonuclease III [Bacillus cereus 03BB108]
gi|196030796|gb|EDX69394.1| exodeoxyribonuclease III [Bacillus cereus NVH0597-99]
gi|218539943|gb|ACK92341.1| exodeoxyribonuclease III [Bacillus cereus AH820]
gi|225789176|gb|ACO29393.1| exodeoxyribonuclease III [Bacillus cereus 03BB102]
gi|227006454|gb|ACP16197.1| exodeoxyribonuclease III [Bacillus anthracis str. CDC 684]
gi|228597519|gb|EEK55168.1| Exodeoxyribonuclease [Bacillus cereus BGSC 6E1]
gi|228660030|gb|EEL15666.1| Exodeoxyribonuclease [Bacillus cereus 95/8201]
gi|228690573|gb|EEL44354.1| Exodeoxyribonuclease [Bacillus cereus Rock3-42]
gi|228812254|gb|EEM58584.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar monterrey BGSC
4AJ1]
gi|228824606|gb|EEM70408.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar andalousiensis
BGSC 4AW1]
gi|228830871|gb|EEM76474.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228843280|gb|EEM88359.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar pulsiensis
BGSC 4CC1]
gi|229267685|gb|ACQ49322.1| exodeoxyribonuclease III [Bacillus anthracis str. A0248]
gi|364513430|gb|AEW56829.1| Exodeoxyribonuclease III [Bacillus cereus F837/76]
gi|384387409|gb|AFH85070.1| Exodeoxyribonuclease III [Bacillus anthracis str. H9401]
gi|401819394|gb|EJT18573.1| exodeoxyribonuclease III [Bacillus anthracis str. UR-1]
Length = 252
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 93/284 (32%), Positives = 149/284 (52%), Gaps = 39/284 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+KF++WN N L + F ++ + D+ LQ L + Y +W+ A
Sbjct: 1 MKFISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKLQEGQIDLNVEGYYTYWNYA 58
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ KK +P V++ L +++ +GRVI EFE FY++ Y PN+ K
Sbjct: 59 VKKGYSGTAIFSKK--EPLSVTYGL--GIEEHDQEGRVITLEFEDFYIITLYTPNS--KR 112
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R KW+ + ++ + K +++CGDLNV+H+EID+ +P
Sbjct: 113 GLERLEYRMKWEDDFRAYIKRLDEKKSVVFCGDLNVAHKEIDLKNP-------------- 158
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
K + PGF+ ER++F IL+EG ID YR+L+ D + +SW +G R K +
Sbjct: 159 -KSNRKNPGFSDEEREKFTCILEEG-FIDTYRYLY--PDQEGAYSWWSYRMGA-RAKNIG 213
Query: 277 -RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
R+DYF+VSE +KD+I A ++ + GSDHCPV L ++
Sbjct: 214 WRLDYFVVSERMKDQITAAKINSEVM------GSDHCPVELHIN 251
>gi|332800472|ref|YP_004461971.1| exodeoxyribonuclease III Xth [Tepidanaerobacter acetatoxydans Re1]
gi|438003872|ref|YP_007273615.1| Exodeoxyribonuclease III [Tepidanaerobacter acetatoxydans Re1]
gi|332698207|gb|AEE92664.1| exodeoxyribonuclease III Xth [Tepidanaerobacter acetatoxydans Re1]
gi|432180666|emb|CCP27639.1| Exodeoxyribonuclease III [Tepidanaerobacter acetatoxydans Re1]
Length = 251
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 94/281 (33%), Positives = 143/281 (50%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K V+WN N L + F + D D+ A+Q L + Y+ +W+ A
Sbjct: 1 MKAVSWNVNGLRACLGKG---FLEYFKDVDADIFAIQETKLQEGQVELELEGYEQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ K P V++ ++ +++ +GRVI EFE FY +N Y PN+ +
Sbjct: 58 VKKGYSGTAVFTK--ISPLSVAYGIDIE--EHDAEGRVITLEFENFYFVNVYVPNS--QR 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R KW+ +E++++ G KP+I CGD NV+H+EID+ +P
Sbjct: 112 GLTRLDYRMKWEDDFREYLIKLDGIKPVICCGDKNVAHQEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GFT ER++ +L G IDA+R+L+ +K D WS + + R
Sbjct: 158 -KSNRKNAGFTDEERQKMTELLNSG-FIDAFRYLYPDKK-DAYTWWSYMFKAREKNVGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYFIVSE LKD+I E+ H + GSDHCPV L++
Sbjct: 215 IDYFIVSERLKDKIKDVEIHSHVM------GSDHCPVLLDI 249
>gi|403234513|ref|ZP_10913099.1| exodeoxyribonuclease III [Bacillus sp. 10403023]
Length = 251
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 95/285 (33%), Positives = 147/285 (51%), Gaps = 40/285 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K V+WN N L VK F ++ D D+ +Q L + Y +W+ A
Sbjct: 1 MKLVSWNVNGLRACVKKG---FLDYFHEMDADIFCVQETKLQEGQIELDLEGYHQFWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ KK +P VS+ + E +GR++ EFE FYL+N Y PN+ +
Sbjct: 58 IKKGYSGTAVFTKK--KPLSVSYGVADE--NEEDEGRILTLEFEDFYLINVYTPNS--QR 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ RI+E+++Q + KP++ CGDLNV+H +ID+ +
Sbjct: 112 DLARLHFRLNWEDRIREYLIQLNKLKPIVLCGDLNVAHSDIDLKNA-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
K + G GFT ER + +L G ID++R+ + DM ++W + + R K +
Sbjct: 158 -KSNRGNSGFTEEERGKMTDLLNSG-FIDSFRYFY--PDMTDKYTW-WSYMRNVREKNIG 212
Query: 277 -RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 320
RIDYFIVSEELK R+ ++ H + GSDHCPV L++ +
Sbjct: 213 WRIDYFIVSEELKHRLKDSQIHSHVM------GSDHCPVVLQIQK 251
>gi|329930518|ref|ZP_08284058.1| exodeoxyribonuclease III [Paenibacillus sp. HGF5]
gi|328934896|gb|EGG31386.1| exodeoxyribonuclease III [Paenibacillus sp. HGF5]
Length = 250
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 94/282 (33%), Positives = 142/282 (50%), Gaps = 38/282 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ---ILMRALSSPPFKNYQIWWSL 98
+K V+WN N L V F ++ D D+ +Q + + YQ +W+
Sbjct: 1 MKLVSWNVNGLRACVTKG---FMDYFNEADADIFCVQETKLQAGQIELDLGPEYQQYWNY 57
Query: 99 ADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWK 157
A+ K Y+GTA+ + P V + LE+ + EP+GRVI EFE FYL+N Y PN K
Sbjct: 58 AEKKGYSGTAVFTR--IAPLSVRYGLEEDS---EPEGRVITLEFEDFYLVNVYTPNA--K 110
Query: 158 EEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVP 216
+ + R +W++R + ++LQ KP+I CGDLNV+H+EID+ +
Sbjct: 111 RDLSRLDYRLEWEERFRTYLLQLDERKPVIVCGDLNVAHQEIDLKNA------------- 157
Query: 217 PNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM 276
K + G GFT+ ER + +L G ID++R + ++ D WS + R
Sbjct: 158 --KSNHGNSGFTLEERGKMTDLLAAG-FIDSFRHFYPDR-TDVYSWWSYMAKVRERNIGW 213
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF+ S L +++ E+ H + GSDHCPVSL L
Sbjct: 214 RIDYFLTSARLAEKLKDAEIDCHVL------GSDHCPVSLTL 249
>gi|261408787|ref|YP_003245028.1| exodeoxyribonuclease III Xth [Paenibacillus sp. Y412MC10]
gi|261285250|gb|ACX67221.1| exodeoxyribonuclease III Xth [Paenibacillus sp. Y412MC10]
Length = 250
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 94/282 (33%), Positives = 142/282 (50%), Gaps = 38/282 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ---ILMRALSSPPFKNYQIWWSL 98
+K V+WN N L V F ++ D D+ +Q + + YQ +W+
Sbjct: 1 MKLVSWNVNGLRACVTKG---FMDYFNEADADIFCVQETKLQAGQIELDLGPEYQQYWNY 57
Query: 99 ADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWK 157
A+ K Y+GTA+ + P V + LE+ + EP+GRVI EFE FYL+N Y PN K
Sbjct: 58 AEKKGYSGTAVFTR--IAPLSVRYGLEEDS---EPEGRVITLEFEGFYLVNVYTPNA--K 110
Query: 158 EEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVP 216
+ + R +W++R + ++LQ KP+I CGDLNV+H+EID+ +
Sbjct: 111 RDLSRLDYRLEWEERFRTYLLQLDERKPVIVCGDLNVAHQEIDLKNA------------- 157
Query: 217 PNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM 276
K + G GFT+ ER + +L G ID++R + ++ D WS + R
Sbjct: 158 --KSNHGNSGFTLEERGKMTDLLAAG-FIDSFRHFYPDR-TDVYSWWSYMAKVRERNIGW 213
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF+ S L +++ E+ H + GSDHCPVSL L
Sbjct: 214 RIDYFLTSARLAEKLKDAEIDCHVL------GSDHCPVSLTL 249
>gi|49478354|ref|YP_037804.1| exodeoxyribonuclease III [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|301055229|ref|YP_003793440.1| exodeoxyribonuclease III [Bacillus cereus biovar anthracis str. CI]
gi|423550511|ref|ZP_17526838.1| exodeoxyribonuclease III (xth) [Bacillus cereus ISP3191]
gi|49329910|gb|AAT60556.1| exodeoxyribonuclease III [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|300377398|gb|ADK06302.1| exodeoxyribonuclease III [Bacillus cereus biovar anthracis str. CI]
gi|401190127|gb|EJQ97177.1| exodeoxyribonuclease III (xth) [Bacillus cereus ISP3191]
Length = 252
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 92/284 (32%), Positives = 149/284 (52%), Gaps = 39/284 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+KF++WN N L + F ++ + D+ +Q L + Y +W+ A
Sbjct: 1 MKFISWNVNGLRAVIAKG--GFLEYLEESNADIFCVQEIKLQEGQIDLNVEGYYTYWNYA 58
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ KK +P V++ L +++ +GRVI EFE FY++ Y PN+ K
Sbjct: 59 VKKGYSGTAIFSKK--EPLSVTYGL--GIEEHDQEGRVITLEFEDFYIITLYTPNS--KR 112
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R KW+ + ++ + K +++CGDLNV+H+EID+ +P
Sbjct: 113 GLERLEYRMKWEDDFRAYIKRLDEKKSVVFCGDLNVAHKEIDLKNP-------------- 158
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
K + PGF+ ER++F IL+EG ID YR+L+ D + +SW +G R K +
Sbjct: 159 -KSNRKNPGFSDEEREKFTCILEEG-FIDTYRYLY--PDQEGAYSWWSYRMGA-RAKNIG 213
Query: 277 -RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
R+DYF+VSE +KD+I A ++ + GSDHCPV L ++
Sbjct: 214 WRLDYFVVSERMKDQITAAKINSEVM------GSDHCPVELHIN 251
>gi|354580157|ref|ZP_08999062.1| exodeoxyribonuclease III [Paenibacillus lactis 154]
gi|353202588|gb|EHB68037.1| exodeoxyribonuclease III [Paenibacillus lactis 154]
Length = 255
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 90/284 (31%), Positives = 145/284 (51%), Gaps = 38/284 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ---ILMRALSSPPFKNYQIWWSL 98
+K V+WN N L V F ++ D D+ +Q + + +Y+ +W+
Sbjct: 1 MKLVSWNVNGLRACVNKG---FLDYFKQTDADIFCVQETKLQEGQIELELGSDYRQYWNY 57
Query: 99 ADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWK 157
A K Y+GTA+ + +P V + +E+ EP+GR+I EF+ FYL+N Y PN K
Sbjct: 58 AQKKGYSGTAVFTR--LEPLSVRYGIEEDE---EPEGRIITLEFQHFYLVNVYTPNA--K 110
Query: 158 EEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVP 216
+ + R +W++R + ++ Q KP+I CGDLNV+H+EID+ +
Sbjct: 111 RDLSRLSYRLEWEERFRRYLQQLDAVKPVIICGDLNVAHQEIDLKNA------------- 157
Query: 217 PNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM 276
K + G GFT+ ER + +L G ID++RF + ++ D WS + R
Sbjct: 158 --KSNLGNSGFTLEERGKMTDLLAAG-FIDSFRFFYPDR-TDVYSWWSYMAKVRERNIGW 213
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 320
RIDYF+VS L ++++ E+ H + GSDHCPV L +S+
Sbjct: 214 RIDYFLVSARLSEKLVDAEIDCHVL------GSDHCPVRLTVSK 251
>gi|299821801|ref|ZP_07053689.1| exodeoxyribonuclease III [Listeria grayi DSM 20601]
gi|299817466|gb|EFI84702.1| exodeoxyribonuclease III [Listeria grayi DSM 20601]
Length = 254
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 88/283 (31%), Positives = 140/283 (49%), Gaps = 37/283 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ---ILMRALSSPPFKNYQIWWSL 98
++F++WN N L VK FS++ D D+ +Q + + + Y +W+
Sbjct: 1 MRFISWNVNGLRAAVKKG---FSDYFKEADADIFCVQETKLQAGQIELEGLEGYHDYWNY 57
Query: 99 ADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWK 157
A K Y+GTA+ K+ +P V + L + + +GRVI EF FY + Y PN+ +
Sbjct: 58 AVKKGYSGTAVFTKE--EPLSVQYGLPEDV--HNQEGRVITLEFPAFYFVTVYTPNS--Q 111
Query: 158 EEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVP 216
E R +W++ + ++ KP+++CGDLNV+H+EID+ +P
Sbjct: 112 AELKRLDYRTEWEQAFADHIIALDKQKPVVFCGDLNVAHQEIDLKNP------------- 158
Query: 217 PNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM 276
K + PGF+ ER FG +L G +D +R+L+ E++ D WS + R
Sbjct: 159 --KTNRKNPGFSDQERAMFGQLLDNG-FVDTFRYLYPEQE-DAYSWWSYRMNARSRNVGW 214
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
RIDYF+VS L D I + + GSDHCPV LE++
Sbjct: 215 RIDYFVVSSRLSDSIQEARIHAEVL------GSDHCPVELEIA 251
>gi|229174398|ref|ZP_04301930.1| Exodeoxyribonuclease [Bacillus cereus MM3]
gi|228608958|gb|EEK66248.1| Exodeoxyribonuclease [Bacillus cereus MM3]
Length = 252
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 92/284 (32%), Positives = 147/284 (51%), Gaps = 39/284 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPF--KNYQIWWSLA 99
+K ++WN N L + F ++ + D+ LQ + + Y +W+ A
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNVDIFCLQEIKLQDGQIDLNPEGYYTYWNYA 58
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ KK +P V++ L +++ +GRVI EFE FY++ Y PN+ K
Sbjct: 59 VKKGYSGTAIFTKK--EPLSVTYGL--GIEEHDQEGRVITLEFEDFYMITLYTPNS--KR 112
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R KW+ + ++ Q KP+++CGDLNV+H+EID+ +P
Sbjct: 113 GLERLDYRMKWEDDFRAYIKQLDEKKPVVFCGDLNVAHKEIDLKNP-------------- 158
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
K + PGF+ ER++F IL+EG ID YR+L+ D + +SW +G R K +
Sbjct: 159 -KSNRKNPGFSDEEREKFTCILEEG-FIDTYRYLY--PDQEGAYSWWSYRMGA-RAKNIG 213
Query: 277 -RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
R+DYF+VSE +KD+I ++ + GSDHCPV L ++
Sbjct: 214 WRLDYFVVSERMKDKITEAKINSEVM------GSDHCPVELHIN 251
>gi|297618884|ref|YP_003706989.1| exodeoxyribonuclease III Xth [Methanococcus voltae A3]
gi|297377861|gb|ADI36016.1| exodeoxyribonuclease III Xth [Methanococcus voltae A3]
Length = 249
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 90/283 (31%), Positives = 145/283 (51%), Gaps = 42/283 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPP----FKNYQIWWS 97
+K ++WN N + ++ F +F+ +PD++ LQ + +SP Y+ +W+
Sbjct: 1 MKLISWNVNGIKAILQKG---FVDFVKQENPDILCLQEI--KTNSPSQILDLSEYKQYWN 55
Query: 98 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 156
A K Y+GTA+ K+ +PK +++ ++ + +GRVI AE++ +YL+N Y PN+
Sbjct: 56 TASKKGYSGTAIFTKQ--KPKNITYGMDNFP---DEEGRVITAEYDNYYLVNVYTPNS-- 108
Query: 157 KEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 215
+ R KWD + E++L + KPLI+CGDLNV+H+EID+ +P
Sbjct: 109 QRGLTRLDYRMKWDTKFLEYLLSLNESKPLIFCGDLNVAHKEIDLKNP------------ 156
Query: 216 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 275
K + GFT ER F + E +D +R +KE D +S+ N K G
Sbjct: 157 ---KTNKKHAGFTEEERMGFDKYV-ENNFVDTFRLFNKESDNYTWWSYMHNARAKNIG-- 210
Query: 276 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF S + + + + L+ YGSDHCP+ LEL
Sbjct: 211 WRIDYFCTSNSIVNYV------KKSVILDKIYGSDHCPIKLEL 247
>gi|16800960|ref|NP_471228.1| hypothetical protein lin1894 [Listeria innocua Clip11262]
gi|422416297|ref|ZP_16493254.1| exodeoxyribonuclease III [Listeria innocua FSL J1-023]
gi|16414395|emb|CAC97124.1| lin1894 [Listeria innocua Clip11262]
gi|313623313|gb|EFR93545.1| exodeoxyribonuclease III [Listeria innocua FSL J1-023]
Length = 251
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 96/286 (33%), Positives = 143/286 (50%), Gaps = 44/286 (15%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQIL-----MRALSSPPFKNYQIWW 96
+K ++WN N L VK + E+ D D+ LQ L P +K+Y W
Sbjct: 1 MKLISWNVNGLRAAVKKGFLEY---FEEVDADIFCLQETKLQEGQIELDLPAYKDY---W 54
Query: 97 SLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNG 155
+ A K Y+GTA+ K +P V + L +++ +GRVI EFE FY++ Y PN+
Sbjct: 55 NYAVKKGYSGTAIFTK--VEPLSVQYGL--GVPEHDTEGRVITLEFEDFYMVTVYTPNS- 109
Query: 156 WKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY 214
+ E R ++ I E+V KP++ CGDLNV+HEEID+ +P
Sbjct: 110 -QAELKRLDYRMTFEDAILEYVKNLDKTKPVVLCGDLNVAHEEIDLKNP----------- 157
Query: 215 VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRG 273
K + GF+ ER +F A L G ID++R+ + D+ +S WS + R
Sbjct: 158 ----KTNRKNAGFSDEERAKFSAFLDAG-FIDSFRYFY--PDLTDAYSWWSYRMNARARN 210
Query: 274 KRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
RIDYF+VSE LKD+++ ++ + GSDHCPV LEL+
Sbjct: 211 TGWRIDYFVVSERLKDKLVDAKIHADVL------GSDHCPVELELN 250
>gi|423635487|ref|ZP_17611140.1| exodeoxyribonuclease [Bacillus cereus VD156]
gi|401278238|gb|EJR84174.1| exodeoxyribonuclease [Bacillus cereus VD156]
Length = 252
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 92/284 (32%), Positives = 147/284 (51%), Gaps = 39/284 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F ++ D+ LQ L + Y +W+ A
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESSADIFCLQEIKLQEGQIDLNLEGYYTYWNYA 58
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ KK +P V++ L+ +++ +GR+I EFE FY++ Y PN+ K
Sbjct: 59 VKKGYSGTAIFSKK--EPLSVTYGLDIE--EHDQEGRLITLEFEDFYMITLYTPNS--KR 112
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R KW+ + ++ + KP+I+CGDLNV+H+EID+ +P
Sbjct: 113 GLERLDYRMKWEDDFRSYIKRLDEKKPVIFCGDLNVAHKEIDLKNP-------------- 158
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
K + PGF+ ER++F IL+EG ID YR+L+ D + +SW +G R K +
Sbjct: 159 -KSNRKNPGFSDEEREKFSCILEEG-FIDTYRYLY--PDQEDAYSWWSYRMGA-RAKNIG 213
Query: 277 -RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
R+DYF+VSE +KD+I ++ + GSDHCPV L ++
Sbjct: 214 WRLDYFVVSERMKDQITEAKINSEVM------GSDHCPVELHIN 251
>gi|282877708|ref|ZP_06286523.1| exodeoxyribonuclease III [Prevotella buccalis ATCC 35310]
gi|281300280|gb|EFA92634.1| exodeoxyribonuclease III [Prevotella buccalis ATCC 35310]
Length = 249
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 93/282 (32%), Positives = 143/282 (50%), Gaps = 39/282 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+KF++WN N L VK +F D D LQ + F+ YQ +W+ A
Sbjct: 1 MKFISWNVNGLRACVK---KDFEASFHHLDADFFCLQETKMQAGQLDLQFEGYQSYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
D K Y+GTA+ K P V++ L +++ +GRVI E + F+L+ Y PN+ ++
Sbjct: 58 DKKGYSGTAIYTKHT--PLNVTYGLGID--EHDHEGRVITMEMDDFFLITVYVPNS--QD 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R +W+ + +V+Q KP+I CGDLNV+HEEID+ +P
Sbjct: 112 ELRRLDYRMQWEDDFRAYVMQLDAIKPVIICGDLNVAHEEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
K + GFT ER++ +L G +D +R L+ E+ +S WS + +
Sbjct: 158 -KTNRRNAGFTDEEREKMTILLNNG-FVDTFRHLYPEQ---VTYSWWSYRFRAREKNAGW 212
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF++SE LK+R++ ++ + GSDHCPV LEL
Sbjct: 213 RIDYFLISERLKERLVDAKIHTEIL------GSDHCPVELEL 248
>gi|288799645|ref|ZP_06405104.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 299 str. F0039]
gi|288332893|gb|EFC71372.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 299 str. F0039]
Length = 250
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 88/283 (31%), Positives = 144/283 (50%), Gaps = 39/283 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+KF++WN N L V F + T D D LQ + F+ Y+ +W+ A
Sbjct: 1 MKFISWNVNGLRASVTKG---FEDIFKTLDADFFCLQETKMQAGQLDLQFEGYESYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
D K Y+GTA+ K P V + + +++ +GRV+ EFE FYL+ Y PN+ ++
Sbjct: 58 DKKGYSGTAIYTKHS--PLSVQYGIGID--QHDHEGRVVTLEFEQFYLVTVYTPNS--QD 111
Query: 159 EENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R +W++ Q ++++ + KP++ CGD+NV+H+EID+ +P
Sbjct: 112 ELKRLDYRMEWERDFQAYLVKLDASKPVVVCGDMNVAHQEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
K + GFT ER++ +L G ID +R+L+ E + +S WS + +
Sbjct: 158 -KTNRRNAGFTDEEREKMTNLLDNG-FIDTFRYLYPE---EVTYSWWSYRFKAREKNTGW 212
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
RIDYF++SE LK + ++ +GSDHCPV L+L+
Sbjct: 213 RIDYFLISERLKSNLTDAKIH------TDIFGSDHCPVELDLT 249
>gi|89097572|ref|ZP_01170461.1| Exodeoxyribonuclease III [Bacillus sp. NRRL B-14911]
gi|89087868|gb|EAR66980.1| Exodeoxyribonuclease III [Bacillus sp. NRRL B-14911]
Length = 251
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 94/288 (32%), Positives = 152/288 (52%), Gaps = 48/288 (16%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K V+WN N + VK F +F + D+ +Q L Y +W+ A
Sbjct: 1 MKLVSWNVNGIRACVKKG---FLDFFMEENADIFCIQESKLQEGQIELNLDGYHQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K+ +P VS+ + + EP+GR + EFE FYLLN Y PN+ K
Sbjct: 58 EKKGYSGTAVFTKE--KPLYVSYGI--AGRETEPEGRSLTLEFENFYLLNVYTPNS--KR 111
Query: 159 EENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R +W+ I+E++L+ KP+I CGDLNV+H +ID+ +
Sbjct: 112 DLARLPYRLEWEDEIREYILELEQKKPVILCGDLNVAHLDIDLKNA-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
+ + G GFT ER + ++L EG +D++R+L+ E+ + ++W + + K R + +
Sbjct: 158 -RSNRGNSGFTDEERGKMTSLLSEG-FVDSFRYLYPEQ--EGAYTW-WSYMAKVRERNIG 212
Query: 277 -RIDYFIVSEELKDRI----IACEMQGHGIELEGFYGSDHCPVSLELS 319
RIDYFIVS++LK+ I I C++ GSDHCP+ LE++
Sbjct: 213 WRIDYFIVSDKLKEHILDSKIYCDIM----------GSDHCPIMLEMA 250
>gi|228922454|ref|ZP_04085756.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar huazhongensis
BGSC 4BD1]
gi|423581952|ref|ZP_17558063.1| exodeoxyribonuclease [Bacillus cereus VD014]
gi|228837168|gb|EEM82507.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar huazhongensis
BGSC 4BD1]
gi|401212831|gb|EJR19572.1| exodeoxyribonuclease [Bacillus cereus VD014]
Length = 252
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 92/284 (32%), Positives = 147/284 (51%), Gaps = 39/284 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F ++ D+ LQ L + Y +W+ A
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESSADIFCLQEIKLQEGQIDLNLEGYYTYWNYA 58
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ KK +P V++ L+ +++ +GR+I EFE FY++ Y PN+ K
Sbjct: 59 VKKGYSGTAIFSKK--EPLSVTYGLDIE--EHDQEGRLITLEFEDFYMITLYTPNS--KR 112
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R KW+ + ++ + KP+I+CGDLNV+H+EID+ +P
Sbjct: 113 GLERLDYRMKWEDDFRSYIKRLDEKKPVIFCGDLNVAHKEIDLKNP-------------- 158
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
K + PGF+ ER++F IL+EG ID YR+L+ D + +SW +G R K +
Sbjct: 159 -KSNRKNPGFSDEEREKFSCILEEG-FIDTYRYLY--PDQEDAYSWWSYRMGA-RAKNIG 213
Query: 277 -RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
R+DYF+VSE +KD+I ++ + GSDHCPV L ++
Sbjct: 214 WRLDYFVVSERMKDQITEAKINTEVM------GSDHCPVELHIN 251
>gi|423385244|ref|ZP_17362500.1| exodeoxyribonuclease [Bacillus cereus BAG1X1-2]
gi|423528399|ref|ZP_17504844.1| exodeoxyribonuclease [Bacillus cereus HuB1-1]
gi|401635300|gb|EJS53055.1| exodeoxyribonuclease [Bacillus cereus BAG1X1-2]
gi|402452062|gb|EJV83881.1| exodeoxyribonuclease [Bacillus cereus HuB1-1]
Length = 252
Score = 134 bits (337), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 91/284 (32%), Positives = 147/284 (51%), Gaps = 39/284 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + + F ++ D+ LQ L + Y +W+ A
Sbjct: 1 MKLISWNVNGLRAVIAKD--GFLEYLEESSADIFCLQEIKLQEGQIDLNLEGYYTYWNYA 58
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ KK +P V++ L +++ +GR+I EFE FY++ Y PN+ K
Sbjct: 59 VKKGYSGTAIFSKK--EPLSVTYGL--GIEEHDQEGRLITLEFEDFYMITLYTPNS--KR 112
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R KW+ + ++ + KP+I+CGDLNV+H+EID+ +P
Sbjct: 113 GLERLDYRMKWEDDFRSYIKRLDEKKPVIFCGDLNVAHKEIDLKNP-------------- 158
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
K + PGF+ ER++F IL+EG +D YR+L+ D + +SW +G R K +
Sbjct: 159 -KSNRKNPGFSDEEREKFSCILEEG-FVDTYRYLY--PDQEGAYSWWSYRMGA-RAKNIG 213
Query: 277 -RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
R+DYF+VSE +KD+I ++ + GSDHCPV L ++
Sbjct: 214 WRLDYFVVSERMKDQITEAKINSEVM------GSDHCPVELHIN 251
>gi|423100921|ref|ZP_17088626.1| exodeoxyribonuclease III [Listeria innocua ATCC 33091]
gi|370792563|gb|EHN60427.1| exodeoxyribonuclease III [Listeria innocua ATCC 33091]
Length = 256
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 96/286 (33%), Positives = 142/286 (49%), Gaps = 44/286 (15%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQIL-----MRALSSPPFKNYQIWW 96
+K ++WN N L VK F + D D+ LQ L P +K+Y W
Sbjct: 6 MKLISWNVNGLRAAVKKG---FLEYFEEVDADIFCLQETKLQEGQIELDLPAYKDY---W 59
Query: 97 SLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNG 155
+ A K Y+GTA+ K +P V + L +++ +GRVI EFE FY++ Y PN+
Sbjct: 60 NYAVKKGYSGTAIFTK--VEPLSVQYGL--GVPEHDTEGRVITLEFEDFYMVTVYTPNS- 114
Query: 156 WKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY 214
+ E R ++ I E+V KP++ CGDLNV+HEEID+ +P
Sbjct: 115 -QAELKRLDYRMTFEDAILEYVKNLDKTKPVVLCGDLNVAHEEIDLKNP----------- 162
Query: 215 VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRG 273
K + GF+ ER +F A L G ID++R+ + D+ +S WS + R
Sbjct: 163 ----KTNRKNAGFSDEERAKFSAFLDAG-FIDSFRYFY--PDLTDAYSWWSYRMNARARN 215
Query: 274 KRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
RIDYF+VSE LKD+++ ++ + GSDHCPV LEL+
Sbjct: 216 TGWRIDYFVVSERLKDKLVDAKIHADVL------GSDHCPVELELN 255
>gi|226309896|ref|YP_002769790.1| exodeoxyribonuclease [Brevibacillus brevis NBRC 100599]
gi|226092844|dbj|BAH41286.1| exodeoxyribonuclease [Brevibacillus brevis NBRC 100599]
Length = 253
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 91/283 (32%), Positives = 141/283 (49%), Gaps = 38/283 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ---ILMRALSSPPFKNYQIWWSL 98
+K ++WN N L V F + + D+ LQ + + + Y +W+
Sbjct: 1 MKLISWNVNGLRACVNKG---FYEYFKEANADIFCLQETKLQEGQIEMEIGEAYHQYWNY 57
Query: 99 ADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWK 157
A+ K Y+GTA+ K +P V + LE+ +EP+GRVI EF+ FYL+ Y PN K
Sbjct: 58 AEKKGYSGTAVFTK--MEPLSVRYGLEE---DHEPEGRVITLEFQDFYLVTVYTPNA--K 110
Query: 158 EEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVP 216
+ + R +W+ R + ++LQ G KP++ CGDLNV+H+EID+ +
Sbjct: 111 RDLSRLDYRLEWEDRFRNYLLQLDGKKPVVVCGDLNVAHQEIDLKNA------------- 157
Query: 217 PNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM 276
K + G GFT ER++ ++L G +D YR+ + ++ D WS P + R
Sbjct: 158 --KSNRGNSGFTPEEREKMTSLLAAG-FVDTYRYFYPDQ-TDAYTWWSFMPKVRERNIGW 213
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
RIDYF+ SE L ++ + + GSDHCPV LEL
Sbjct: 214 RIDYFLASERLAPALLRAGIDSQVM------GSDHCPVVLELG 250
>gi|229191862|ref|ZP_04318833.1| Exodeoxyribonuclease [Bacillus cereus ATCC 10876]
gi|228591624|gb|EEK49472.1| Exodeoxyribonuclease [Bacillus cereus ATCC 10876]
Length = 252
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 91/284 (32%), Positives = 146/284 (51%), Gaps = 39/284 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F ++ D+ LQ L + Y +W+ A
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESSADIFCLQEIKLQEGQIDLNLEGYYTYWNYA 58
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ KK +P V++ L+ +++ +GR+I EFE FY++ Y PN+ K
Sbjct: 59 VKKGYSGTAIFSKK--EPLSVTYGLDIE--EHDQEGRLITLEFEDFYMITLYTPNS--KR 112
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R KW+ + ++ + KP+I+CGDLNV+H+EID+ +P
Sbjct: 113 GLERLDYRMKWEDDFRSYIKRLDEKKPVIFCGDLNVAHKEIDLKNP-------------- 158
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
K + PGF+ ER++F IL+EG D YR+L+ D + +SW +G R K +
Sbjct: 159 -KSNRKNPGFSDEEREKFSCILEEG-FTDTYRYLY--PDQESAYSWWSYRMGA-RAKNIG 213
Query: 277 -RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
R+DYF+VSE +KD+I ++ + GSDHCPV L ++
Sbjct: 214 WRLDYFVVSERMKDQITEAKINSEVM------GSDHCPVELHIN 251
>gi|326390442|ref|ZP_08212000.1| exodeoxyribonuclease III Xth [Thermoanaerobacter ethanolicus JW
200]
gi|392939538|ref|ZP_10305182.1| exodeoxyribonuclease III [Thermoanaerobacter siderophilus SR4]
gi|325993560|gb|EGD51994.1| exodeoxyribonuclease III Xth [Thermoanaerobacter ethanolicus JW
200]
gi|392291288|gb|EIV99731.1| exodeoxyribonuclease III [Thermoanaerobacter siderophilus SR4]
Length = 257
Score = 134 bits (336), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 93/286 (32%), Positives = 148/286 (51%), Gaps = 39/286 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIA-----LQILMRALSSPPFKNYQIWW 96
+KFV+WN N L ++ F ++ + D+ LQ L + Y +W
Sbjct: 1 MKFVSWNVNGLRACLQKG---FMDYFKKVNADIFCIQETKLQPHQTGLEELNLEGYYAFW 57
Query: 97 SLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNG 155
+ A+ K Y+GTA+ K ++P V++ + +++ +GRVI E+E FYL+NTY PN+
Sbjct: 58 NFAEKKAYSGTAVFTK--YKPLSVNYGI--GIPQHDNEGRVITLEYEKFYLVNTYTPNS- 112
Query: 156 WKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY 214
+ R +W++ + ++L+ S KP+I CGDLNV+H+EID+ +P +A + N
Sbjct: 113 -QRGLTRLSYRMEWEEDFRNYLLKLDSVKPIILCGDLNVAHKEIDIKNP---SANRRNA- 167
Query: 215 VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGK 274
GFT ER++ +L G ID +R+ + K D WS + +
Sbjct: 168 -----------GFTDEEREKMTMLLNSG-FIDTFRYFYPHKK-DAYTWWSYMRNAREKNI 214
Query: 275 RMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 320
RIDYFIVS+ LKD +I E+ + GSDHCPV LE+ +
Sbjct: 215 GWRIDYFIVSQRLKDYLIDAEIHSDVM------GSDHCPVVLEIDD 254
>gi|52141752|ref|YP_085078.1| exodeoxyribonuclease III [Bacillus cereus E33L]
gi|51975221|gb|AAU16771.1| exodeoxyribonuclease III [Bacillus cereus E33L]
Length = 252
Score = 133 bits (335), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 93/284 (32%), Positives = 148/284 (52%), Gaps = 39/284 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+KF++WN N L + F ++ + D+ LQ L ++Y +W+ A
Sbjct: 1 MKFISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKLQEGQIDLNVEDYYTYWNYA 58
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ KK +P V++ L +++ +GRVI EFE FY++ Y PN K
Sbjct: 59 VKKGYSGTAIFSKK--EPLSVTYGL--GIEEHDQEGRVITLEFEGFYIITLYTPNA--KR 112
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R KW+ + ++ + KP+I+CGDLNV+H+EID+ +P
Sbjct: 113 GLERLDYRMKWEDDFRAYIKRLDEKKPVIFCGDLNVAHKEIDLKNP-------------- 158
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
K + PGF+ ER++F IL+EG ID YR+L+ D + +SW +G R K +
Sbjct: 159 -KSNRKNPGFSDEEREKFTCILEEG-FIDTYRYLY--PDQEGAYSWWSYRMGA-RAKNIG 213
Query: 277 -RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
R+DYF+VSE +K++I ++ + GSDHCPV L ++
Sbjct: 214 WRLDYFVVSERIKNQIKDAKINSEVM------GSDHCPVELHIN 251
>gi|422413323|ref|ZP_16490282.1| exodeoxyribonuclease III, partial [Listeria innocua FSL S4-378]
gi|313618350|gb|EFR90386.1| exodeoxyribonuclease III [Listeria innocua FSL S4-378]
Length = 253
Score = 133 bits (335), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 96/285 (33%), Positives = 141/285 (49%), Gaps = 44/285 (15%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQIL-----MRALSSPPFKNYQIWWS 97
K ++WN N L VK F + D D+ LQ L P +K+Y W+
Sbjct: 4 KLISWNVNGLRAAVKKG---FLEYFEEVDADIFCLQETKLQEGQIELDLPAYKDY---WN 57
Query: 98 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 156
A K Y+GTA+ K +P V + L +++ +GRVI EFE FY++ Y PN+
Sbjct: 58 YAVKKGYSGTAIFTK--VEPLSVQYGL--GVPEHDTEGRVITLEFEDFYMVTVYTPNS-- 111
Query: 157 KEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 215
+ E R ++ I E+V KP++ CGDLNV+HEEID+ +P
Sbjct: 112 QAELKRLDYRMTFEDAILEYVKNLDKTKPVVLCGDLNVAHEEIDLKNP------------ 159
Query: 216 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGK 274
K + GF+ ER +F A L G ID++R+ + D+ +S WS + R
Sbjct: 160 ---KTNRKNAGFSDEERAKFSAFLDAG-FIDSFRYFY--PDLTDAYSWWSYRMNARARNT 213
Query: 275 RMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
RIDYF+VSE LKD+++ ++ + GSDHCPV LEL+
Sbjct: 214 GWRIDYFVVSERLKDKLVDAKIHADVL------GSDHCPVELELN 252
>gi|423458084|ref|ZP_17434881.1| exodeoxyribonuclease [Bacillus cereus BAG5X2-1]
gi|401148468|gb|EJQ55961.1| exodeoxyribonuclease [Bacillus cereus BAG5X2-1]
Length = 252
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 92/284 (32%), Positives = 146/284 (51%), Gaps = 39/284 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPF--KNYQIWWSLA 99
+K ++WN N L + F ++ D+ LQ + + Y +W+ A
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESSADIFCLQEIKLQDGQIDLNPEGYYAYWNYA 58
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ KK +P V++ L +++ +GRVI EFE FY++ Y PN+ K
Sbjct: 59 VKKGYSGTAIFSKK--EPLAVTYGL--GIEEHDQEGRVITLEFEDFYIITLYTPNS--KR 112
Query: 159 EENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R KW+ + ++ Q K P+++CGDLNV+H+EID+ +P
Sbjct: 113 GLERLDYRMKWEDDFRAYIKQLDKKKPVVFCGDLNVAHKEIDLKNP-------------- 158
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
K + PGF+ ER++F IL+EG ID YR+L+ D + +SW +G R K +
Sbjct: 159 -KSNRKNPGFSDEEREKFTRILEEG-FIDTYRYLY--PDQEGAYSWWSYRMGA-RAKNIG 213
Query: 277 -RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
R+DYF+VSE +KD+I ++ + GSDHCPV L ++
Sbjct: 214 WRLDYFVVSERMKDKITEAKINSEVM------GSDHCPVELHIN 251
>gi|229111211|ref|ZP_04240765.1| Exodeoxyribonuclease [Bacillus cereus Rock1-15]
gi|229146311|ref|ZP_04274682.1| Exodeoxyribonuclease [Bacillus cereus BDRD-ST24]
gi|296504242|ref|YP_003665942.1| exodeoxyribonuclease III [Bacillus thuringiensis BMB171]
gi|423585849|ref|ZP_17561936.1| exodeoxyribonuclease [Bacillus cereus VD045]
gi|423641177|ref|ZP_17616795.1| exodeoxyribonuclease [Bacillus cereus VD166]
gi|423649605|ref|ZP_17625175.1| exodeoxyribonuclease [Bacillus cereus VD169]
gi|423656600|ref|ZP_17631899.1| exodeoxyribonuclease [Bacillus cereus VD200]
gi|228636944|gb|EEK93403.1| Exodeoxyribonuclease [Bacillus cereus BDRD-ST24]
gi|228672205|gb|EEL27495.1| Exodeoxyribonuclease [Bacillus cereus Rock1-15]
gi|296325294|gb|ADH08222.1| exodeoxyribonuclease III [Bacillus thuringiensis BMB171]
gi|401233195|gb|EJR39691.1| exodeoxyribonuclease [Bacillus cereus VD045]
gi|401280238|gb|EJR86160.1| exodeoxyribonuclease [Bacillus cereus VD166]
gi|401282885|gb|EJR88782.1| exodeoxyribonuclease [Bacillus cereus VD169]
gi|401290341|gb|EJR96035.1| exodeoxyribonuclease [Bacillus cereus VD200]
Length = 252
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 92/284 (32%), Positives = 149/284 (52%), Gaps = 39/284 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F ++ D+ LQ L + Y +W+ A
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESSADIFCLQEIKLQEGQIDLNLEGYYTYWNYA 58
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ KK +P V++ L +++ +GR+I EFE FY++ Y PN+ K
Sbjct: 59 VKKGYSGTAIFSKK--EPLSVTYGL--GIEEHDQEGRLITLEFEDFYMITLYTPNS--KR 112
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R KW+ + ++ + KP+I+CGDLNV+H+EID+ +P+
Sbjct: 113 GLERLDYRMKWEDDFRSYIKRLDEKKPVIFCGDLNVAHKEIDLKNPK------------S 160
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
N+E+ PGF+ ER++F IL+EG ID YR+L+ + + +SW +G R K +
Sbjct: 161 NREN---PGFSDEEREKFSCILEEG-FIDTYRYLY--PNQEGAYSWWSYRMGA-RAKNIG 213
Query: 277 -RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
R+DYF+VSE +KD+I ++ + GSDHCPV L ++
Sbjct: 214 WRLDYFVVSERMKDQITEAKINSEVM------GSDHCPVELHIN 251
>gi|452823263|gb|EME30275.1| exodeoxyribonuclease III [Galdieria sulphuraria]
Length = 331
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 96/290 (33%), Positives = 144/290 (49%), Gaps = 44/290 (15%)
Query: 44 FVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ---------ILMRALSSPPFKNYQI 94
F+TWN + VKN P F F++ PDVI LQ + S + + I
Sbjct: 71 FITWNVAGMRSTVKN--PLFLGFLSKLGPDVICLQETKLSDKGQVSEEVTQSLSDQYHDI 128
Query: 95 W-WSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPN 153
W A Y+GTA+ ++ +P V + L++ K+ +GRVI E+E ++L+N Y PN
Sbjct: 129 WNHCTARKGYSGTAIFTRE--EPLSVLYGLQEE--KHNEEGRVITLEYEKYFLVNAYVPN 184
Query: 154 NGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLN 212
G ++ R W+K + +++ + K P+I+ GDLNV+H+EID+
Sbjct: 185 AGEGLRRLNY-RIDSWEKDMCQYLCGLNQKKPVIYTGDLNVAHQEIDI------------ 231
Query: 213 GYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKY 271
Y P E GFT ER++F +L+ G +DA+R+L+ + F+ WS K
Sbjct: 232 -YQPKGHEK--HAGFTPQERQKFTDLLQCG-FVDAFRYLYPHRQ---SFTYWSKRAKAKE 284
Query: 272 RGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEA 321
R R+DYF+ SE L I+ CEM E Y SDHCP+ L L A
Sbjct: 285 RNHGWRLDYFVTSERLVPCILECEM------FENIYISDHCPLMLHLDIA 328
>gi|46908012|ref|YP_014401.1| exodeoxyribonuclease [Listeria monocytogenes serotype 4b str.
F2365]
gi|47094151|ref|ZP_00231871.1| exodeoxyribonuclease [Listeria monocytogenes str. 4b H7858]
gi|217964070|ref|YP_002349748.1| exodeoxyribonuclease III [Listeria monocytogenes HCC23]
gi|226224385|ref|YP_002758492.1| 3'-exo-deoxyribonuclease exoA [Listeria monocytogenes serotype 4b
str. CLIP 80459]
gi|254826392|ref|ZP_05231393.1| exodeoxyribonuclease [Listeria monocytogenes FSL J1-194]
gi|254933631|ref|ZP_05266990.1| exodeoxyribonuclease [Listeria monocytogenes HPB2262]
gi|255521086|ref|ZP_05388323.1| 3'-exo-deoxyribonuclease exoA [Listeria monocytogenes FSL J1-175]
gi|300766428|ref|ZP_07076383.1| exodeoxyribonuclease [Listeria monocytogenes FSL N1-017]
gi|386008552|ref|YP_005926830.1| exodeoxyribonuclease [Listeria monocytogenes L99]
gi|386027157|ref|YP_005947933.1| putative 3'-exo-deoxyribonuclease III [Listeria monocytogenes M7]
gi|386732521|ref|YP_006206017.1| exodeoxyribonuclease III [Listeria monocytogenes 07PF0776]
gi|404281392|ref|YP_006682290.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2755]
gi|404287210|ref|YP_006693796.1| exodeoxyribonuclease [Listeria monocytogenes serotype 7 str.
SLCC2482]
gi|405750132|ref|YP_006673598.1| exodeoxyribonuclease [Listeria monocytogenes ATCC 19117]
gi|405753007|ref|YP_006676472.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2378]
gi|405755941|ref|YP_006679405.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2540]
gi|406704564|ref|YP_006754918.1| exodeoxyribonuclease [Listeria monocytogenes L312]
gi|417315430|ref|ZP_12102109.1| exodeoxyribonuclease III [Listeria monocytogenes J1816]
gi|422809864|ref|ZP_16858275.1| Exodeoxyribonuclease III [Listeria monocytogenes FSL J1-208]
gi|424714659|ref|YP_007015374.1| Exodeoxyribonuclease [Listeria monocytogenes serotype 4b str.
LL195]
gi|424823542|ref|ZP_18248555.1| Exodeoxyribonuclease III [Listeria monocytogenes str. Scott A]
gi|46881282|gb|AAT04578.1| exodeoxyribonuclease [Listeria monocytogenes serotype 4b str.
F2365]
gi|47017476|gb|EAL08289.1| exodeoxyribonuclease [Listeria monocytogenes str. 4b H7858]
gi|217333340|gb|ACK39134.1| exodeoxyribonuclease III [Listeria monocytogenes HCC23]
gi|225876847|emb|CAS05556.1| Putative 3'-exo-deoxyribonuclease exoA [Listeria monocytogenes
serotype 4b str. CLIP 80459]
gi|293585194|gb|EFF97226.1| exodeoxyribonuclease [Listeria monocytogenes HPB2262]
gi|293595632|gb|EFG03393.1| exodeoxyribonuclease [Listeria monocytogenes FSL J1-194]
gi|300512852|gb|EFK39944.1| exodeoxyribonuclease [Listeria monocytogenes FSL N1-017]
gi|307571362|emb|CAR84541.1| exodeoxyribonuclease [Listeria monocytogenes L99]
gi|328466425|gb|EGF37573.1| exodeoxyribonuclease III [Listeria monocytogenes J1816]
gi|332312222|gb|EGJ25317.1| Exodeoxyribonuclease III [Listeria monocytogenes str. Scott A]
gi|336023738|gb|AEH92875.1| putative 3'-exo-deoxyribonuclease III [Listeria monocytogenes M7]
gi|378752065|gb|EHY62652.1| Exodeoxyribonuclease III [Listeria monocytogenes FSL J1-208]
gi|384391279|gb|AFH80349.1| exodeoxyribonuclease III [Listeria monocytogenes 07PF0776]
gi|404219332|emb|CBY70696.1| exodeoxyribonuclease [Listeria monocytogenes ATCC 19117]
gi|404222207|emb|CBY73570.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2378]
gi|404225141|emb|CBY76503.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2540]
gi|404228027|emb|CBY49432.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2755]
gi|404246139|emb|CBY04364.1| exodeoxyribonuclease [Listeria monocytogenes serotype 7 str.
SLCC2482]
gi|406361594|emb|CBY67867.1| exodeoxyribonuclease [Listeria monocytogenes L312]
gi|424013843|emb|CCO64383.1| Exodeoxyribonuclease [Listeria monocytogenes serotype 4b str.
LL195]
Length = 251
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 95/286 (33%), Positives = 143/286 (50%), Gaps = 44/286 (15%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQIL-----MRALSSPPFKNYQIWW 96
+K ++WN N L VK + E+ D D+ LQ L P +K+Y W
Sbjct: 1 MKLISWNVNGLRAAVKKGFLEY---FEEVDADIFCLQETKLQEGQIELDLPAYKDY---W 54
Query: 97 SLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNG 155
+ A K Y+GTA+ K +P V + L +++ +GRVI EFE F+++ Y PN+
Sbjct: 55 NYAVKKGYSGTAIFTK--VEPLSVQYGL--GVPEHDTEGRVITLEFEEFFMVTVYTPNS- 109
Query: 156 WKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY 214
+ E R ++ I E+V KP++ CGDLNV+HEEID+ +P
Sbjct: 110 -QAELKRLDYRMTFEDAILEYVKNLDKTKPVVLCGDLNVAHEEIDLKNP----------- 157
Query: 215 VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRG 273
K + GF+ ER +F A L G ID++R+ + D+ +S WS + R
Sbjct: 158 ----KTNRKNAGFSDEERAKFSAFLDAG-FIDSFRYFY--PDLTDAYSWWSYRMNARARN 210
Query: 274 KRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
RIDYF+VSE LKD+++ ++ + GSDHCPV LEL+
Sbjct: 211 TGWRIDYFVVSERLKDKLVDAKIHADVL------GSDHCPVELELN 250
>gi|291222020|ref|XP_002731016.1| PREDICTED: predicted protein-like [Saccoglossus kowalevskii]
Length = 338
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 98/285 (34%), Positives = 152/285 (53%), Gaps = 40/285 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPP----FKNYQIWWS 97
+K V+WN N + KN E +++ DPD+ +Q P F Y +WS
Sbjct: 86 IKLVSWNVNGVRAWCKN---EGHKYVSKEDPDIFTIQETKCQEGEVPDDVKFDGYHSYWS 142
Query: 98 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 156
A+ K YAGT L K +P V++ + K++ +GR I AE+E FY ++TY PN G
Sbjct: 143 YAEEKGYAGTGLYSK--VEPISVTYGIGIN--KHDKEGRCITAEYEKFYFISTYIPNAGK 198
Query: 157 KEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 215
+ S+ R++WDK +E++ + KP+IWCGDLNV+H+EID+++P+
Sbjct: 199 GLKRLSY--RQEWDKDFREYMKKLDEKKPIIWCGDLNVAHQEIDLTNPK----------- 245
Query: 216 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGF-SWSGNPIGKYRGK 274
NK+ GF+ ER+ F L+ G L+D+YR L+ EK + F ++ N GK G
Sbjct: 246 -TNKK---TAGFSKEEREGFTKHLEIG-LVDSYRHLNPEKTGEWSFWTYMMNARGKNIG- 299
Query: 275 RMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
R+DYF++S+ R++ C I YGSDH P+ L ++
Sbjct: 300 -WRLDYFVLSK----RLLPCLCD--SIIRSQVYGSDHAPIVLFMA 337
>gi|403378650|ref|ZP_10920707.1| exodeoxyribonuclease [Paenibacillus sp. JC66]
Length = 256
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 94/282 (33%), Positives = 144/282 (51%), Gaps = 37/282 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ---ILMRALSSPPFKNYQIWWSL 98
+K V+WN N L R N F+++ D DV +Q + LS N +W+
Sbjct: 1 MKLVSWNVNGL--RACVNKGCFTDYFEQIDADVFCVQETKMQEGQLSLELGDNIHSYWNY 58
Query: 99 ADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWK 157
A K Y+GTA+ K +P V + LE+ E +GR++ EF +FYL+N Y PN K
Sbjct: 59 ALKKGYSGTAVFSK--IEPISVRYGLEEDE---EAEGRILTLEFASFYLVNVYTPNA--K 111
Query: 158 EEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVP 216
+ + R +W+ R +++++Q KP+I CGDLNV+H+EID+ +
Sbjct: 112 RDLSRLPYRLEWEDRFRKYIVQLDEKKPVIICGDLNVAHQEIDIKNA------------- 158
Query: 217 PNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM 276
K + G GFT ER +F +L G +D++R L+ ++ D WS P + R
Sbjct: 159 --KSNVGNSGFTHEERGKFNELLGAG-FLDSFRELYPDR-TDAYTWWSFMPKVRERNIGW 214
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF++SE+L+ + + H GSDHCPV +EL
Sbjct: 215 RIDYFLISEKLRPHLKEAGIDSH------IMGSDHCPVYVEL 250
>gi|315303668|ref|ZP_07874193.1| exodeoxyribonuclease III [Listeria ivanovii FSL F6-596]
gi|313627958|gb|EFR96566.1| exodeoxyribonuclease III [Listeria ivanovii FSL F6-596]
Length = 251
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 96/286 (33%), Positives = 150/286 (52%), Gaps = 44/286 (15%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ-ILMRA----LSSPPFKNYQIWW 96
+K ++WN N L VK + E+ + + D D+ LQ ++A L P +K+Y W
Sbjct: 1 MKLISWNVNGLRAVVKKGFLEYFD---SVDADIFCLQETKLQAGQIDLDLPGYKDY---W 54
Query: 97 SLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNG 155
+ A K Y+GTA+ KK +P V + L +++ +GRVI EFE F+++ Y PN+
Sbjct: 55 NYAVKKGYSGTAIFTKK--EPLSVQYGL--GIEEHDTEGRVITLEFENFFMVTVYTPNS- 109
Query: 156 WKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY 214
+ E R ++ I +V + KP+I CGDLNV+HEEID+ +P
Sbjct: 110 -QAELKRLDYRMTFEDAILAYVKKLDETKPVILCGDLNVAHEEIDLKNP----------- 157
Query: 215 VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRG 273
K + GF+ ER +F A L+ G +D++R+ + D++ +S WS + R
Sbjct: 158 ----KTNRKNAGFSDEERAKFTAFLEAG-FVDSFRYFY--PDLEDAYSWWSYRMNARARN 210
Query: 274 KRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
RIDYF+VSE LKD ++ ++ + GSDHCPV LEL+
Sbjct: 211 TGWRIDYFVVSERLKDNLVDAKIHPDVL------GSDHCPVELELN 250
>gi|290893090|ref|ZP_06556079.1| exodeoxyribonuclease [Listeria monocytogenes FSL J2-071]
gi|404408223|ref|YP_006690938.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2376]
gi|290557450|gb|EFD90975.1| exodeoxyribonuclease [Listeria monocytogenes FSL J2-071]
gi|404242372|emb|CBY63772.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2376]
Length = 251
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 95/286 (33%), Positives = 143/286 (50%), Gaps = 44/286 (15%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQIL-----MRALSSPPFKNYQIWW 96
+K ++WN N L VK + E+ D D+ LQ L P +K+Y W
Sbjct: 1 MKLISWNVNGLRAAVKKGFLEY---FEEVDSDIFCLQETKLQEGQIELDLPAYKDY---W 54
Query: 97 SLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNG 155
+ A K Y+GTA+ K +P V + L +++ +GRVI EFE F+++ Y PN+
Sbjct: 55 NYAVKKGYSGTAIFTK--VEPLSVQYGL--GVPEHDTEGRVITLEFEEFFMVTVYTPNS- 109
Query: 156 WKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY 214
+ E R ++ I E+V KP++ CGDLNV+HEEID+ +P
Sbjct: 110 -QAELKRLDYRMTFEDAILEYVKNLDKTKPVVLCGDLNVAHEEIDLKNP----------- 157
Query: 215 VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRG 273
K + GF+ ER +F A L G ID++R+ + D+ +S WS + R
Sbjct: 158 ----KTNRKNAGFSDEERAKFSAFLDAG-FIDSFRYFY--PDLTDAYSWWSYRMNARARN 210
Query: 274 KRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
RIDYF+VSE LKD+++ ++ + GSDHCPV LEL+
Sbjct: 211 TGWRIDYFVVSERLKDKLVDAKIHADVL------GSDHCPVELELN 250
>gi|304407353|ref|ZP_07389006.1| exodeoxyribonuclease III Xth [Paenibacillus curdlanolyticus YK9]
gi|304343794|gb|EFM09635.1| exodeoxyribonuclease III Xth [Paenibacillus curdlanolyticus YK9]
Length = 255
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 94/285 (32%), Positives = 142/285 (49%), Gaps = 38/285 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ---ILMRALSSPPFKNYQIWWSL 98
+K ++WN N L V F ++ D D+ LQ + + P Y +W+
Sbjct: 1 MKLISWNVNGLRACVTKG---FMDYFNESDADIFCLQETKLQAGQIELPLEGRYSQYWNY 57
Query: 99 ADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWK 157
A K Y+GTA+ K +P V + +E+ + E +GR++ EF+ FYL+N Y PN K
Sbjct: 58 AVKKGYSGTAVFTK--VEPLTVRYGIEEDS---EDEGRILTLEFDRFYLVNVYTPNA--K 110
Query: 158 EEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVP 216
+ + R +W+ R + ++L+ KP+I CGDLNV+H+EID+ +
Sbjct: 111 RDLSRLGYRLEWEDRFRAYLLELDAQKPVIVCGDLNVAHQEIDLKNA------------- 157
Query: 217 PNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM 276
K + G GFT ER + +L+ G ID +R LH E+D D WS P + R
Sbjct: 158 --KSNHGNSGFTTEERGKMTDLLESG-FIDTFRHLHPERD-DAFSWWSFMPKVRERNIGW 213
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEA 321
RIDYF+ S L A + GI+ GSDHCPV ++L +A
Sbjct: 214 RIDYFLASARL-----APHVTDAGID-SAILGSDHCPVMVQLEDA 252
>gi|16803822|ref|NP_465307.1| hypothetical protein lmo1782 [Listeria monocytogenes EGD-e]
gi|16411236|emb|CAC99860.1| lmo1782 [Listeria monocytogenes EGD-e]
Length = 251
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 95/286 (33%), Positives = 143/286 (50%), Gaps = 44/286 (15%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQIL-----MRALSSPPFKNYQIWW 96
+K ++WN N L VK + E+ D D+ LQ L P +K+Y W
Sbjct: 1 MKLISWNVNGLRAAVKKGFLEY---FEEVDADIFCLQETKLQEGQIELDLPAYKDY---W 54
Query: 97 SLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNG 155
+ A K Y+GTA+ K +P V + L +++ +GRVI EFE F+++ Y PN+
Sbjct: 55 NYAVKKGYSGTAIFTK--VEPLSVQYGL--GIPEHDTEGRVITLEFEEFFMVTVYTPNS- 109
Query: 156 WKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY 214
+ E R ++ I E+V KP++ CGDLNV+HEEID+ +P
Sbjct: 110 -QAELKRLDYRMTFEDAILEYVKNLDNTKPVVLCGDLNVAHEEIDLKNP----------- 157
Query: 215 VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRG 273
K + GF+ ER +F A L G ID++R+ + D+ +S WS + R
Sbjct: 158 ----KTNRKNAGFSDEERAKFSAFLDAG-FIDSFRYFY--PDLTDAYSWWSYRMNARARN 210
Query: 274 KRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
RIDYF+VSE LKD+++ ++ + GSDHCPV LEL+
Sbjct: 211 TGWRIDYFVVSERLKDKLVDAKIHADVL------GSDHCPVELELN 250
>gi|282880102|ref|ZP_06288822.1| exodeoxyribonuclease III [Prevotella timonensis CRIS 5C-B1]
gi|281305975|gb|EFA98015.1| exodeoxyribonuclease III [Prevotella timonensis CRIS 5C-B1]
Length = 249
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 96/282 (34%), Positives = 142/282 (50%), Gaps = 39/282 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+KF++WN N L VK N F D D LQ + F Y +W+ A
Sbjct: 1 MKFISWNVNGLRACVKKN---FQESFQQLDADFFCLQETKMQEGQLDLQFPGYTSYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K +P VS+ L +++ +GRVI E E F+L+ Y PN+ ++
Sbjct: 58 EKKGYSGTAIYTKH--KPIHVSYGL--GIEEHDQEGRVITLEMEDFFLITVYVPNS--QD 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R KW+ + ++ Q KP+I CGDLNV+HEEID+ +P+
Sbjct: 112 ELKRLDYRMKWEDDFRAYITQLDQIKPVIICGDLNVAHEEIDLKNPK------------T 159
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
NK + GFT ER + +L G ID +R+L+ E+ +S WS + +
Sbjct: 160 NKRN---AGFTDEERNKMTRLLDNG-FIDTFRYLYPEQ---ITYSWWSYRFRAREKNAGW 212
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF++SE LK+R+ ++ + GSDHCPV LEL
Sbjct: 213 RIDYFLISERLKERLHDAKIHTEIM------GSDHCPVELEL 248
>gi|116873216|ref|YP_849997.1| exodeoxyribonuclease III [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|116742094|emb|CAK21218.1| exodeoxyribonuclease III [Listeria welshimeri serovar 6b str.
SLCC5334]
Length = 251
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 92/283 (32%), Positives = 142/283 (50%), Gaps = 38/283 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L VK + E+ D D+ LQ L K Y+ +W+ A
Sbjct: 1 MKLISWNVNGLRAAVKKGFLEY---FEEVDADIFCLQETKLQEGQIELDLKAYKDYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ K +P V + L +++ +GRVI EFE F+++ Y PN+ +
Sbjct: 58 VKKGYSGTAIFTK--VEPLSVQYGL--GIPEHDTEGRVITLEFEAFFMVTVYTPNS--QA 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R ++ I E++ KP++ CGDLNV+HEEID+ +P
Sbjct: 112 ELKRLDYRMTFEDAILEYIKNLDKTKPVVLCGDLNVAHEEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
K + GF+ ER +F A L G ID++R+ + D+ +S WS + R
Sbjct: 158 -KTNRKNAGFSDEERAKFSAFLDAG-FIDSFRYFY--PDLTDAYSWWSYRMNARARNTGW 213
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
RIDYF+VS+ LKD+++ ++ + GSDHCPV LEL+
Sbjct: 214 RIDYFVVSKRLKDKLVDAKIHSEVL------GSDHCPVELELN 250
>gi|30021833|ref|NP_833464.1| exodeoxyribonuclease III [Bacillus cereus ATCC 14579]
gi|229129016|ref|ZP_04257989.1| Exodeoxyribonuclease [Bacillus cereus BDRD-Cer4]
gi|29897389|gb|AAP10665.1| Exodeoxyribonuclease III [Bacillus cereus ATCC 14579]
gi|228654253|gb|EEL10118.1| Exodeoxyribonuclease [Bacillus cereus BDRD-Cer4]
Length = 252
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 92/284 (32%), Positives = 149/284 (52%), Gaps = 39/284 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F ++ D+ LQ L + Y +W+ A
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESSADIFCLQEIKLQEGQIDLNLEGYYTYWNYA 58
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ KK +P V++ L +++ +GR+I EFE FY++ Y PN+ K
Sbjct: 59 VKKGYSGTAIFSKK--EPLSVTYGL--GIEEHDQEGRLITLEFEDFYMITLYTPNS--KR 112
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R KW+ + ++ + KP+I+CGDLNV+H+EID+ +P+
Sbjct: 113 GLERLDYRMKWEDDFRSYIKRLDEKKPVIFCGDLNVAHKEIDLKNPK------------S 160
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
N+E+ PGF+ ER++F IL+EG ID YR+L+ + + +SW +G R K +
Sbjct: 161 NREN---PGFSDEEREKFSCILEEG-FIDTYRYLY--PNQEGAYSWWSYRMGA-RAKNIG 213
Query: 277 -RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
R+DYF+VSE +KD+I ++ + GSDHCPV L ++
Sbjct: 214 WRLDYFVVSEGMKDQITEAKINSEVM------GSDHCPVELHIN 251
>gi|229031365|ref|ZP_04187367.1| Exodeoxyribonuclease [Bacillus cereus AH1271]
gi|228729930|gb|EEL80908.1| Exodeoxyribonuclease [Bacillus cereus AH1271]
Length = 252
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 91/284 (32%), Positives = 147/284 (51%), Gaps = 39/284 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPF--KNYQIWWSLA 99
+K ++WN N L + F ++ + D+ LQ + + Y +W+ A
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKLQDGQIDLNPEGYYTYWNYA 58
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ K+ +P V++ L +++ +GRVI EFE FY++ Y PN+ K
Sbjct: 59 VKKGYSGTAIFSKQ--EPLSVTYGL--GIEEHDQEGRVITVEFEGFYMITLYTPNS--KR 112
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R KW+ + ++ + KP+I+CGDLNV+H+EID+ +P
Sbjct: 113 GLERLDYRMKWEDDFRAYIKRLDEKKPVIFCGDLNVAHKEIDLKNP-------------- 158
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
K + PGF+ ER++F IL+EG ID YR+L+ D + +SW +G R K +
Sbjct: 159 -KSNRKNPGFSDEEREKFTRILEEG-FIDTYRYLY--PDQEGAYSWWSYRMGA-RAKNIG 213
Query: 277 -RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
R+DYF+VSE +KD+I ++ + GSDHCPV L ++
Sbjct: 214 WRLDYFVVSERMKDKITEAKINSEVM------GSDHCPVELHIN 251
>gi|340382054|ref|XP_003389536.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like
[Amphimedon queenslandica]
Length = 372
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 101/310 (32%), Positives = 157/310 (50%), Gaps = 40/310 (12%)
Query: 17 PALSPSKKDGETTETSSEENSKKDP---LKFVTWNANSLLLRVKNNWPEFSNFITTFDPD 73
P LS S D + + SS+ +K KF +WN N + +K + E+ N PD
Sbjct: 89 PILSKSVTDYSSIDLSSDAKNKDGSPWTHKFSSWNVNGVRAWLKASGIEYVNQEC---PD 145
Query: 74 VIALQILMRALSSPP-----FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTA 127
V +Q + P Y +W+ A+ K Y+GT L K+ +P V++ +
Sbjct: 146 VFCIQETKCSEKDLPKSELEVPGYHSYWNSAEQKGYSGTGLYSKE--EPINVTYGI--GI 201
Query: 128 LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLI 186
K++ +GRVI AEFE FY + Y PN G K + S+ R +WD ++++ KP++
Sbjct: 202 PKHDNEGRVITAEFEKFYFVTAYIPNAGDKLKRLSY-RVGEWDPDFKKYLKSLDENKPVV 260
Query: 187 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLID 246
CGDLNV+H+EID+++P K + GFT ER+ F ++L++ +LID
Sbjct: 261 LCGDLNVAHKEIDIANP---------------KTNQRSAGFTKEERESFSSLLEDNKLID 305
Query: 247 AYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 306
++R L+ +K + WS + K R+DYF+VSE LK + C+ I
Sbjct: 306 SFRDLYPDKKEAYSY-WSYRSNARKNNKGWRLDYFLVSERLKAAV--CD----SIIRSQV 358
Query: 307 YGSDHCPVSL 316
YGSDHCP+ L
Sbjct: 359 YGSDHCPIVL 368
>gi|254479049|ref|ZP_05092404.1| exodeoxyribonuclease III [Carboxydibrachium pacificum DSM 12653]
gi|214035005|gb|EEB75724.1| exodeoxyribonuclease III [Carboxydibrachium pacificum DSM 12653]
Length = 258
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 91/286 (31%), Positives = 146/286 (51%), Gaps = 39/286 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQIL-----MRALSSPPFKNYQIWW 96
+K V+WN N L ++ F ++ D D+ +Q + + Y +W
Sbjct: 1 MKLVSWNVNGLRACLQKG---FMDYFKAIDADIFCIQETKLQENQKDIEGLDLNGYYAFW 57
Query: 97 SLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNG 155
+ A+ K Y+GTA+ K ++P VS+ + ++ +GRVI E+E F+L+NTY PN+
Sbjct: 58 NFAEKKGYSGTAVFTK--YKPLSVSYGIGTP--HHDKEGRVITLEYEKFFLVNTYTPNS- 112
Query: 156 WKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY 214
+ R +W++ + ++L+ S KP+I CGDLNV+H+EID+ +P AA + N
Sbjct: 113 -QRGLTRLDYRMQWEEDFRSYLLKLDSLKPVILCGDLNVAHQEIDIKNP---AANRRNA- 167
Query: 215 VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGK 274
GFT ER++ +L G ID +R+ + +K D WS + +
Sbjct: 168 -----------GFTDEEREKMTILLNSG-FIDTFRYFYPDKK-DAYTWWSYMHNAREKNI 214
Query: 275 RMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 320
R+DYFIVSE LKD +I ++ + GSDHCPV L + E
Sbjct: 215 GWRVDYFIVSERLKDYLIDSQIHSEVM------GSDHCPVVLIVKE 254
>gi|323344424|ref|ZP_08084649.1| exodeoxyribonuclease III [Prevotella oralis ATCC 33269]
gi|323094551|gb|EFZ37127.1| exodeoxyribonuclease III [Prevotella oralis ATCC 33269]
Length = 249
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 91/282 (32%), Positives = 141/282 (50%), Gaps = 39/282 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L V +F + D D LQ + F YQ +W+ A
Sbjct: 1 MKLISWNVNGLRACVG---KDFETSFKSLDADFFCLQETKMQAGQLDLAFNGYQSYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
D K Y+GTA+ K+ P V++ + +++ +GRVI E E F+L+ Y PN+ ++
Sbjct: 58 DKKGYSGTAIFTKQT--PLNVTYGMGID--EHDHEGRVITLETENFFLVTVYTPNS--QD 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E + R +W+ + ++L KP+I CGD+NV+HEEID+ +P
Sbjct: 112 ELRRLEYRMRWEDDFKAYLLALDARKPVIVCGDMNVAHEEIDIKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
K + GFT ER++ +L G ID +R L+ E+ +S WS + R
Sbjct: 158 -KTNRRNAGFTDEEREKMTELLAGG-FIDTFRTLYPEQ---VTYSWWSYRFRARERNTGW 212
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF++SE LK+RI ++ YGSDHCP+ L+L
Sbjct: 213 RIDYFLISERLKERIADAKIH------TDIYGSDHCPIELDL 248
>gi|23097966|ref|NP_691432.1| exodeoxyribonuclease [Oceanobacillus iheyensis HTE831]
gi|22776190|dbj|BAC12467.1| exodeoxyribonuclease [Oceanobacillus iheyensis HTE831]
Length = 269
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 90/283 (31%), Positives = 140/283 (49%), Gaps = 36/283 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+ F++WN N + V+ F +F D +Q L Y +W+ A
Sbjct: 1 MHFISWNVNGIRACVRKG---FLDFFQEMGADFFCIQESKLQEGQIQLDLDGYYQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K ++P V + ++ YEP+GR+I E+E+FYL+N Y PN+ K
Sbjct: 58 ERKGYSGTAIFTK--WEPLHVFYGIDSN--NYEPEGRIITLEYESFYLVNVYTPNS--KR 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ + R +W+ R+ +++ + + KPL++CGDLNV+H EID+ +
Sbjct: 112 DLTRLEDRLEWEDRLFDYLQKLNKKKPLVYCGDLNVAHHEIDLRN--------------- 156
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
+K + G GFT ER + +L G +D R H E D D WS + R R
Sbjct: 157 DKTNHGNSGFTKEERSKMSRLLDAG-FVDTLRHFHPEAD-DIFTWWSYMKTIRERNIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 320
IDYFIVSE+L + E+ + GSDHCP+ L + E
Sbjct: 215 IDYFIVSEQLIPALKKSEVHSSVL------GSDHCPIGLVIDE 251
>gi|47568231|ref|ZP_00238934.1| exodeoxyribonuclease III [Bacillus cereus G9241]
gi|228986876|ref|ZP_04147003.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar tochigiensis
BGSC 4Y1]
gi|47555059|gb|EAL13407.1| exodeoxyribonuclease III [Bacillus cereus G9241]
gi|228772825|gb|EEM21264.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar tochigiensis
BGSC 4Y1]
Length = 252
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 92/284 (32%), Positives = 147/284 (51%), Gaps = 39/284 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F ++ + D+ LQ L + Y +W+ A
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKLQDGQIDLNLEEYYTYWNYA 58
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ KK +P V++ L +++ +GRVI EFE FY++ Y PN+ K
Sbjct: 59 VKKGYSGTAIFSKK--EPLSVTYGL--GIEEHDQEGRVITLEFEDFYIITLYTPNS--KR 112
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R KW+ + ++ + KP+I+CGDLNV+H+EID+ +P
Sbjct: 113 GLERLDYRMKWEDDFRVYIKRLDEKKPVIFCGDLNVAHKEIDLKNP-------------- 158
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
K + PGF+ ER++F IL+EG ID YR+L+ + + +SW +G R K +
Sbjct: 159 -KSNRKNPGFSDEEREKFTCILEEG-FIDTYRYLY--PNQEGAYSWWSYRMGA-RAKNIG 213
Query: 277 -RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
R+DYF+VSE +KD+I ++ + GSDHCPV L ++
Sbjct: 214 WRLDYFVVSERMKDQITEAKINSEVM------GSDHCPVELHIN 251
>gi|289435119|ref|YP_003464991.1| exodeoxyribonuclease III [Listeria seeligeri serovar 1/2b str.
SLCC3954]
gi|289171363|emb|CBH27905.1| exodeoxyribonuclease III [Listeria seeligeri serovar 1/2b str.
SLCC3954]
Length = 251
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 95/286 (33%), Positives = 150/286 (52%), Gaps = 44/286 (15%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ-ILMRA----LSSPPFKNYQIWW 96
+K ++WN N L VK + E+ + + D D+ LQ ++A L P +K+Y W
Sbjct: 1 MKLISWNVNGLRAAVKKGFLEYFD---SVDADIFCLQETKLQAGQIDLDLPAYKDY---W 54
Query: 97 SLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNG 155
+ A K Y+GTA+ KK +P V + L +++ +GRVI EFE F+++ Y PN+
Sbjct: 55 NYAVKKGYSGTAIFTKK--EPLSVQYGLGIE--EHDTEGRVITLEFEKFFMVTVYTPNS- 109
Query: 156 WKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY 214
+ E R ++ I +V + KP++ CGDLNV+HEEID+ +P
Sbjct: 110 -QAELKRLDYRMTFEDAILAYVKKLDETKPVVLCGDLNVAHEEIDLKNP----------- 157
Query: 215 VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRG 273
K + GF+ ER +F A L+ G +D++R+ + D++ +S WS + R
Sbjct: 158 ----KTNRKNAGFSDEERAKFTAFLEAG-FVDSFRYFY--PDLEDAYSWWSYRMNARARN 210
Query: 274 KRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
RIDYF+VSE LKD ++ ++ + GSDHCPV LEL+
Sbjct: 211 IGWRIDYFVVSERLKDNLVDAKIHPDVL------GSDHCPVELELN 250
>gi|404413860|ref|YP_006699447.1| exodeoxyribonuclease [Listeria monocytogenes SLCC7179]
gi|404239559|emb|CBY60960.1| exodeoxyribonuclease [Listeria monocytogenes SLCC7179]
gi|441474667|emb|CCQ24421.1| Exodeoxyribonuclease [Listeria monocytogenes N53-1]
Length = 251
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 95/286 (33%), Positives = 143/286 (50%), Gaps = 44/286 (15%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQIL-----MRALSSPPFKNYQIWW 96
++ ++WN N L VK + E+ D D+ LQ L P +K+Y W
Sbjct: 1 MRLISWNVNGLRAAVKKGFLEY---FEEVDADIFCLQETKLQEGQIELDLPAYKDY---W 54
Query: 97 SLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNG 155
+ A K Y+GTA+ K +P V + L +++ +GRVI EFE F+++ Y PN+
Sbjct: 55 NYAVKKGYSGTAIFTK--VEPLSVQYGL--GIPEHDTEGRVITLEFEEFFMVTVYTPNS- 109
Query: 156 WKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY 214
+ E R ++ I E+V KP++ CGDLNV+HEEID+ +P
Sbjct: 110 -QAELKRLDYRMTFEDAILEYVKNLDKTKPVVLCGDLNVAHEEIDLKNP----------- 157
Query: 215 VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRG 273
K + GF+ ER +F A L G ID++R+ + D+ +S WS + R
Sbjct: 158 ----KTNRKNAGFSDEERAKFSAFLDAG-FIDSFRYFY--PDLTDAYSWWSYRMNARARN 210
Query: 274 KRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
RIDYFIVSE LKD+++ ++ + GSDHCPV LEL+
Sbjct: 211 TGWRIDYFIVSERLKDKLVDAKIHADVL------GSDHCPVELELN 250
>gi|228959948|ref|ZP_04121613.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar pakistani str.
T13001]
gi|423628823|ref|ZP_17604572.1| exodeoxyribonuclease [Bacillus cereus VD154]
gi|228799691|gb|EEM46643.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar pakistani str.
T13001]
gi|401268368|gb|EJR74416.1| exodeoxyribonuclease [Bacillus cereus VD154]
Length = 252
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 91/284 (32%), Positives = 146/284 (51%), Gaps = 39/284 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F ++ D+ LQ L + Y +W+ A
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESSADIFCLQEIKLQEGQIDLNLEGYYTYWNYA 58
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ KK +P V++ L +++ +GR+I EFE FY++ Y PN+ K
Sbjct: 59 VKKGYSGTAIFSKK--EPLSVTYGL--GIEEHDQEGRLITLEFEDFYMITLYTPNS--KR 112
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R KW+ + ++ + KP+I+CGDLNV+H+EID+ +P
Sbjct: 113 GLERLDYRMKWEDDFRSYIKRLDEKKPVIFCGDLNVAHKEIDLKNP-------------- 158
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
K + PGF+ ER++F IL+EG ID YR+L+ + + +SW +G R K +
Sbjct: 159 -KSNRKNPGFSDEEREKFSCILEEG-FIDTYRYLY--PNQEGAYSWWSYRMGA-RAKNIG 213
Query: 277 -RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
R+DYF+VSE +KD+I ++ + GSDHCPV L ++
Sbjct: 214 WRLDYFVVSERMKDQITEAKINSEVM------GSDHCPVELHIN 251
>gi|294055155|ref|YP_003548813.1| exodeoxyribonuclease III Xth [Coraliomargarita akajimensis DSM
45221]
gi|293614488|gb|ADE54643.1| exodeoxyribonuclease III Xth [Coraliomargarita akajimensis DSM
45221]
Length = 262
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 98/291 (33%), Positives = 147/291 (50%), Gaps = 46/291 (15%)
Query: 41 PLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ---ILMRALSSPPFKNY-QIWW 96
P ++WN N L +K F +F+ + PDV+ LQ I + F Y ++W
Sbjct: 3 PTHLLSWNVNGLRAVLKKG---FDDFLASQQPDVLCLQETKISADLTADFAFAGYPYVYW 59
Query: 97 SLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNG 155
+ A+ K Y+GTA++ + +P V + L K++ +GRVI AEFE +YL+ Y PN+
Sbjct: 60 NCAEKKGYSGTAIISQ--IEPISVRYGLGIE--KHDQEGRVITAEFEDYYLVTVYTPNSQ 115
Query: 156 WKEEENSFQRRRKWDKRIQE----FVLQCSG----KPLIWCGDLNVSHEEIDVSHPEFFA 207
+E +R R+ D R E F+ G KP+++CGDLNV+H EID+++P
Sbjct: 116 NHDEN---KRPRRLDYRTLEWDVDFLAYVKGLEVTKPVVFCGDLNVAHTEIDLANP---- 168
Query: 208 AAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNP 267
K + GFT ER RF AI++ G ID +R L+ ++ + WS
Sbjct: 169 -----------KTNRKNAGFTDEERGRFDAIIEAG-FIDTFRHLYPDRTEQYSW-WSYRA 215
Query: 268 IGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
+ R RIDYF VS+ +K++I + L GSDHCPV L L
Sbjct: 216 AARQRNIGWRIDYFCVSDAVKNQIRDATI------LADTLGSDHCPVGLRL 260
>gi|291522762|emb|CBK81055.1| exodeoxyribonuclease III [Coprococcus catus GD/7]
Length = 258
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 89/289 (30%), Positives = 144/289 (49%), Gaps = 36/289 (12%)
Query: 36 NSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQ 93
+ + D +K ++WN N L V F + D D+ LQ L Y+
Sbjct: 2 DEEDDKVKLISWNVNGLRAVVGKG---FVDIFNELDADIFCLQETKLQAGQIELDLPGYE 58
Query: 94 IWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAP 152
+W+ A+ K Y+GTA+ + +P V + ++ +++ +GRVI E+++FYL+N Y P
Sbjct: 59 QYWNYAERKGYSGTAVFTR--IKPLSVRYGMD--IAEHDTEGRVITLEYDSFYLVNVYTP 114
Query: 153 NNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKL 211
N+ K+ R KW+ + ++ KP++ CGDLNV+HEEID+ +P
Sbjct: 115 NS--KDGLARLPYRMKWEDDFRNYLKTLEQTKPVVMCGDLNVAHEEIDLKNP-------- 164
Query: 212 NGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKY 271
K + GF+ ER + +L G ID +R+ + +K + + WS +
Sbjct: 165 -------KTNRKNAGFSDEERAKMTELLAAG-FIDTFRYFYPDKTGEYSW-WSYRFNARK 215
Query: 272 RGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 320
RIDYFIVS+ LK+R+I+ + + +GSDHCPV LEL E
Sbjct: 216 NNAGWRIDYFIVSDALKERLISASIH------QEIFGSDHCPVELELKE 258
>gi|373493819|ref|ZP_09584429.1| exodeoxyribonuclease [Eubacterium infirmum F0142]
gi|371969524|gb|EHO86969.1| exodeoxyribonuclease [Eubacterium infirmum F0142]
Length = 249
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 93/284 (32%), Positives = 142/284 (50%), Gaps = 44/284 (15%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+KFV+WN N L +K F + + FD D +Q + + Y ++S A
Sbjct: 1 MKFVSWNVNGLRAVLKKG---FEDIVKEFDADFFCIQETKMQEGQADVDLPGYHQYFSYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K +P V+++ E ++ +GR +L E++ FYLLN Y PN +
Sbjct: 58 EKKGYSGTAIFTKH--EPLSVTYNFEG----HDDEGRAVLLEYDKFYLLNVYVPNA--QP 109
Query: 159 EENSFQRRRKWDKRIQEFVLQCSGKP-LIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E + R +W+ ++ + + + K ++ CGDLNV+HEEID+ +P
Sbjct: 110 ELKRLEYRMQWEDDLRAMLSELAKKKHVVMCGDLNVAHEEIDLKNP-------------- 155
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSW---SGNPIGKYRGK 274
K + G PGF+ ER + +L G D +R L+ E+ + +SW GN G
Sbjct: 156 -KTNRGNPGFSDEERAKMTELLGAG-FTDTFRHLYPEQ--EGAYSWWSYRGNARKNNTG- 210
Query: 275 RMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF+V E LKD+I + GSDHCPVSLEL
Sbjct: 211 -WRIDYFVVDEGLKDKIKEAAIH------PDVMGSDHCPVSLEL 247
>gi|160879133|ref|YP_001558101.1| exodeoxyribonuclease III [Clostridium phytofermentans ISDg]
gi|160427799|gb|ABX41362.1| exodeoxyribonuclease III [Clostridium phytofermentans ISDg]
Length = 250
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 85/281 (30%), Positives = 146/281 (51%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N + V+ F +F D D+ +Q L F+ Y +W+ A
Sbjct: 1 MKLISWNVNGIRACVQKG---FCDFFKEVDADIFCIQESKLQAGQIELDFEGYYQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ KK +P +V++ + +++ +GRVI EFE FY++ Y PN+ +
Sbjct: 58 EKKGYSGTAIFTKK--EPLQVTYGM--GIEEHDKEGRVITLEFEDFYMVTVYTPNS--QN 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R +W+ + F+ + KP++ CGDLNV+H+EID+ +P ++N
Sbjct: 112 ELARLSYRMEWEDEFRRFLKKLEETKPVVVCGDLNVAHKEIDLKNPN---TNQMNA---- 164
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
GFTI ER +F +L+ G ID +R+ + + MD WS + + R
Sbjct: 165 --------GFTIEERTKFSELLEAG-FIDTFRYFYPDA-MDMYSWWSYRFKAREKNTGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S+ L+ ++++ ++ + GSDHCP+ LE+
Sbjct: 215 IDYFLASQGLESKLVSAKIHSQIL------GSDHCPIELEI 249
>gi|381184157|ref|ZP_09892815.1| exodeoxyribonuclease III [Listeriaceae bacterium TTU M1-001]
gi|380315948|gb|EIA19409.1| exodeoxyribonuclease III [Listeriaceae bacterium TTU M1-001]
Length = 251
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 90/281 (32%), Positives = 140/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+KF++WN N L VK F ++ D D+ LQ L Y +W+ A
Sbjct: 1 MKFISWNVNGLRAAVKKG---FMDYFNEADADIFCLQETKLQEGQIELDLNGYYDYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ KK +P +V + L + +++ +GRVI EFE FY + Y PN+ +
Sbjct: 58 VKKGYSGTAIFTKK--EPLRVFYGL--SVAEHDQEGRVITLEFEQFYFITVYTPNS--QP 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R +++ +V KP+I+CGDLNV+H+EID+ +P
Sbjct: 112 ELARLAYRMSFEEAFLNYVKNLDQEKPVIFCGDLNVAHKEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + PGF+ ER +F +L+ G +D +R + EK+ + WS + R R
Sbjct: 158 -KTNRRNPGFSDEERGKFTTVLESG-FVDTFRHFYPEKEGAYSW-WSYRMNARARNTGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+VS L+D++I ++ + GSDHCPV L +
Sbjct: 215 IDYFVVSSRLRDKLIDAKIHADVL------GSDHCPVELTI 249
>gi|325182155|emb|CCA16608.1| exodeoxyribonuclease putative [Albugo laibachii Nc14]
Length = 375
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 113/336 (33%), Positives = 159/336 (47%), Gaps = 57/336 (16%)
Query: 1 MKRFFKPIEKECSAKKPALSPS-KKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNN 59
+K+ +PI + A + PS D ET S LK + WN N L +K +
Sbjct: 79 LKKTQQPISSDMKAYCEQIRPSFGLDAETLPAES--------LKIIAWNVNGLRALLKYD 130
Query: 60 WPE-FSNFITTFDPDVIAL----------QILMRALSSPPFKNYQIWWSLADSK-YAGTA 107
F ++ D D+I L + + L PF+ +WS A K YAGTA
Sbjct: 131 ESRYFHAYVREEDADIICLSETKIDSPQVEKMEDLLPKYPFQ----YWSCAHKKGYAGTA 186
Query: 108 LLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRR 167
+ K +P +V L+ + L +GR + EFE F+L++TY PN G K E R
Sbjct: 187 VCSK--LEPLQVRSHLDDSTLG-STEGRFLALEFEKFWLVHTYVPNAGMKLERLG-DRTT 242
Query: 168 KWDKRIQEFVLQC----SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWG 223
+WD + + LQ S K +IWCGDLNV+H++ID+ P+ N +
Sbjct: 243 QWDAVLLQ-TLQSLEKESEKGVIWCGDLNVAHQDIDIHDPK-------------NNRN-K 287
Query: 224 QPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIV 283
PGFT AER FG LK G +D +R H EK +S+ N + R K R+DYF+V
Sbjct: 288 SPGFTDAERNNFGETLKTG-FVDTFRHFHPEKQQFTYWSYRFN--ARTRNKGWRLDYFVV 344
Query: 284 SEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
SE L ++ A ++ EG GSDH PV LS
Sbjct: 345 SERLMAQVKASFVR------EGVKGSDHVPVGAILS 374
>gi|254829588|ref|ZP_05234275.1| exodeoxyribonuclease [Listeria monocytogenes FSL N3-165]
gi|284802226|ref|YP_003414091.1| hypothetical protein LM5578_1982 [Listeria monocytogenes 08-5578]
gi|284995368|ref|YP_003417136.1| hypothetical protein LM5923_1933 [Listeria monocytogenes 08-5923]
gi|386054035|ref|YP_005971593.1| exodeoxyribonuclease III [Listeria monocytogenes Finland 1998]
gi|258602005|gb|EEW15330.1| exodeoxyribonuclease [Listeria monocytogenes FSL N3-165]
gi|284057788|gb|ADB68729.1| hypothetical protein LM5578_1982 [Listeria monocytogenes 08-5578]
gi|284060835|gb|ADB71774.1| hypothetical protein LM5923_1933 [Listeria monocytogenes 08-5923]
gi|346646686|gb|AEO39311.1| exodeoxyribonuclease III [Listeria monocytogenes Finland 1998]
Length = 251
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 94/286 (32%), Positives = 143/286 (50%), Gaps = 44/286 (15%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQIL-----MRALSSPPFKNYQIWW 96
++ ++WN N L VK + E+ D D+ LQ L P +K+Y W
Sbjct: 1 MRLISWNVNGLRAAVKKGFLEY---FEEVDADIFCLQETKLQEGQIELDLPAYKDY---W 54
Query: 97 SLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNG 155
+ A K Y+GTA+ K +P V + L +++ +GRVI EFE F+++ Y PN+
Sbjct: 55 NYAVKKGYSGTAIFTK--VEPLSVQYGL--GIPEHDTEGRVITLEFEEFFMVTVYTPNS- 109
Query: 156 WKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY 214
+ E R ++ I E+V KP++ CGDLNV+HEEID+ +P
Sbjct: 110 -QAELKRLDYRMTFEDAILEYVKNLDNTKPVVLCGDLNVAHEEIDLKNP----------- 157
Query: 215 VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRG 273
K + GF+ ER +F A L G ID++R+ + D+ +S WS + R
Sbjct: 158 ----KTNRKNAGFSDEERAKFSAFLDAG-FIDSFRYFY--PDLTDAYSWWSYRMNARARN 210
Query: 274 KRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
RIDYF+VSE LKD+++ ++ + GSDHCPV LEL+
Sbjct: 211 TGWRIDYFVVSERLKDKLVDAKIHADVL------GSDHCPVELELN 250
>gi|427406978|ref|ZP_18897183.1| exodeoxyribonuclease III (xth) [Selenomonas sp. F0473]
gi|425707453|gb|EKU70497.1| exodeoxyribonuclease III (xth) [Selenomonas sp. F0473]
Length = 250
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 93/284 (32%), Positives = 136/284 (47%), Gaps = 40/284 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQIL-----MRALSSPPFKNYQIWW 96
++FV+WN N L +K F D D LQ L P ++ Y ++
Sbjct: 1 MRFVSWNVNGLRAALKKG---FMESFKALDADAFCLQETKMQEGQAILDLPGYEQY--FY 55
Query: 97 SLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 156
S Y+GTA+ + QP V++ + A +++ +GRVI EFE YL+ Y PN
Sbjct: 56 SAEKKGYSGTAIFTR--VQPLSVAYGI--GAPEHDDEGRVITMEFEELYLVTVYTPNA-- 109
Query: 157 KEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 215
K R W+ + F+L K P++ CGDLNV+H+EID+ +P
Sbjct: 110 KRALERLDYRMAWEDAFRAFLLNLRAKKPVVVCGDLNVAHKEIDLKNP------------ 157
Query: 216 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 275
K + GFT ER +FG +L G +D +R L+ ++ + WS +
Sbjct: 158 ---KSNRHNAGFTDEERGKFGELLAAG-FVDTFRALYPDRRGAYTW-WSYLRHARETNAG 212
Query: 276 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
RIDYF+VSEEL+ R+ A E+ +GSDHCPVSL LS
Sbjct: 213 WRIDYFLVSEELRGRVAAAEIHAD------IFGSDHCPVSLTLS 250
>gi|423477848|ref|ZP_17454563.1| exodeoxyribonuclease [Bacillus cereus BAG6X1-1]
gi|402428773|gb|EJV60865.1| exodeoxyribonuclease [Bacillus cereus BAG6X1-1]
Length = 252
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 91/284 (32%), Positives = 147/284 (51%), Gaps = 39/284 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPF--KNYQIWWSLA 99
+K ++WN N L + F ++ + D+ LQ + + Y +W+ A
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKLQDGQIDLNPEGYYTYWNYA 58
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ KK +P V++ L +++ +GRVI EFE FY++ Y PN+ K
Sbjct: 59 VKKGYSGTAIFSKK--KPLSVTYGL--GIEEHDQEGRVITLEFEDFYIITLYTPNS--KR 112
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R KW+ + ++ + KP+++CGDLNV+H+EID+ +P
Sbjct: 113 GLERLDYRMKWEDDFRAYIKRLDEKKPVVFCGDLNVAHKEIDLKNP-------------- 158
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
K + PGF+ ER++F IL+EG ID YR+L+ D + +SW +G R K +
Sbjct: 159 -KSNRKNPGFSDEEREKFTRILEEG-FIDTYRYLY--PDQEGAYSWWSYRMGA-RAKNIG 213
Query: 277 -RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
R+DYF+VSE +K++I E+ + GSDHCPV L ++
Sbjct: 214 WRLDYFVVSERMKNQITEAEINSEVM------GSDHCPVELHIN 251
>gi|47097522|ref|ZP_00235061.1| exodeoxyribonuclease [Listeria monocytogenes str. 1/2a F6854]
gi|254914076|ref|ZP_05264088.1| exodeoxyribonuclease [Listeria monocytogenes J2818]
gi|254938390|ref|ZP_05270087.1| exodeoxyribonuclease [Listeria monocytogenes F6900]
gi|386044090|ref|YP_005962895.1| exodeoxyribonuclease III [Listeria monocytogenes 10403S]
gi|386047434|ref|YP_005965766.1| exodeoxyribonuclease III [Listeria monocytogenes J0161]
gi|386050759|ref|YP_005968750.1| exodeoxyribonuclease [Listeria monocytogenes FSL R2-561]
gi|404284278|ref|YP_006685175.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2372]
gi|404411083|ref|YP_006696671.1| exodeoxyribonuclease [Listeria monocytogenes SLCC5850]
gi|405758833|ref|YP_006688109.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2479]
gi|47014105|gb|EAL05099.1| exodeoxyribonuclease [Listeria monocytogenes str. 1/2a F6854]
gi|258611002|gb|EEW23610.1| exodeoxyribonuclease [Listeria monocytogenes F6900]
gi|293592096|gb|EFG00431.1| exodeoxyribonuclease [Listeria monocytogenes J2818]
gi|345534425|gb|AEO03866.1| exodeoxyribonuclease III [Listeria monocytogenes J0161]
gi|345537324|gb|AEO06764.1| exodeoxyribonuclease III [Listeria monocytogenes 10403S]
gi|346424605|gb|AEO26130.1| exodeoxyribonuclease [Listeria monocytogenes FSL R2-561]
gi|404230909|emb|CBY52313.1| exodeoxyribonuclease [Listeria monocytogenes SLCC5850]
gi|404233780|emb|CBY55183.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2372]
gi|404236715|emb|CBY58117.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2479]
Length = 251
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 94/286 (32%), Positives = 143/286 (50%), Gaps = 44/286 (15%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQIL-----MRALSSPPFKNYQIWW 96
++ ++WN N L VK + E+ D D+ LQ L P +K+Y W
Sbjct: 1 MRLISWNVNGLRAAVKKGFLEY---FEEVDADIFCLQETKLQEGQIELDLPAYKDY---W 54
Query: 97 SLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNG 155
+ A K Y+GTA+ K +P V + L +++ +GRVI EFE F+++ Y PN+
Sbjct: 55 NYAVKKGYSGTAIFTK--VEPLSVQYGL--GIPEHDTEGRVITLEFEEFFMVTVYTPNS- 109
Query: 156 WKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY 214
+ E R ++ I E+V KP++ CGDLNV+HEEID+ +P
Sbjct: 110 -QAELKRLDYRMTFEDAILEYVKNLDKTKPVVLCGDLNVAHEEIDLKNP----------- 157
Query: 215 VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRG 273
K + GF+ ER +F A L G ID++R+ + D+ +S WS + R
Sbjct: 158 ----KTNRKNAGFSDEERAKFSAFLDAG-FIDSFRYFY--PDLTDAYSWWSYRMNARARN 210
Query: 274 KRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
RIDYF+VSE LKD+++ ++ + GSDHCPV LEL+
Sbjct: 211 TGWRIDYFVVSERLKDKLVDAKIHADVL------GSDHCPVELELN 250
>gi|423401446|ref|ZP_17378619.1| exodeoxyribonuclease [Bacillus cereus BAG2X1-2]
gi|401654436|gb|EJS71979.1| exodeoxyribonuclease [Bacillus cereus BAG2X1-2]
Length = 252
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 91/284 (32%), Positives = 146/284 (51%), Gaps = 39/284 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPF--KNYQIWWSLA 99
+K ++WN N L + F ++ D+ LQ + + Y +W+ A
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESSADIFCLQEIKLQDGQIDLNPEGYYTYWNYA 58
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ KK +P V++ L +++ +GRVI EFE FY++ Y PN+ K
Sbjct: 59 VKKGYSGTAIFSKK--EPLSVTYGL--GIEEHDQEGRVITLEFEDFYMITLYTPNS--KR 112
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R KW+ + ++ + KP+++CGDLNV+H+EID+ +P
Sbjct: 113 GLERLDYRMKWEDDFRAYIKRLDEKKPVVFCGDLNVAHKEIDLKNP-------------- 158
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
K + PGF+ ER++F IL+EG ID YR+L+ D + +SW +G R K +
Sbjct: 159 -KSNRKNPGFSDEEREKFTRILEEG-FIDTYRYLY--PDQEGAYSWWSYRMGA-RAKNIG 213
Query: 277 -RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
R+DYF+VSE +K++I E+ + GSDHCPV L ++
Sbjct: 214 WRLDYFVVSERMKNQITEAEINSEVM------GSDHCPVELHIN 251
>gi|254854529|ref|ZP_05243877.1| exodeoxyribonuclease [Listeria monocytogenes FSL R2-503]
gi|258607929|gb|EEW20537.1| exodeoxyribonuclease [Listeria monocytogenes FSL R2-503]
Length = 251
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 94/286 (32%), Positives = 142/286 (49%), Gaps = 44/286 (15%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQIL-----MRALSSPPFKNYQIWW 96
+K ++WN N L VK + E+ D D+ LQ L P +K+Y W
Sbjct: 1 MKLISWNVNGLRAAVKKGFLEY---FEEVDADIFCLQETKLQEGQIELDLPAYKDY---W 54
Query: 97 SLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNG 155
+ A K Y+GTA+ K +P V + +++ +GRVI EFE F+++ Y PN+
Sbjct: 55 NYAVKKGYSGTAIFTK--VEPLSVQYGF--GVPEHDTEGRVITLEFEEFFMVTVYTPNS- 109
Query: 156 WKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY 214
+ E R ++ I E+V KP++ CGDLNV+HEEID+ +P
Sbjct: 110 -QAELKRLDYRMTFEDAILEYVKNLDKTKPVVLCGDLNVAHEEIDLKNP----------- 157
Query: 215 VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRG 273
K + GF+ ER +F A L G ID++R+ + D+ +S WS + R
Sbjct: 158 ----KTNRKNAGFSDEERAKFSAFLDAG-FIDSFRYFY--PDLTDAYSWWSYRMNARARN 210
Query: 274 KRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
RIDYF+VSE LKD+++ ++ + GSDHCPV LEL+
Sbjct: 211 TGWRIDYFVVSERLKDKLVDAKIHADVL------GSDHCPVELELN 250
>gi|423395948|ref|ZP_17373149.1| exodeoxyribonuclease [Bacillus cereus BAG2X1-1]
gi|423406828|ref|ZP_17383977.1| exodeoxyribonuclease [Bacillus cereus BAG2X1-3]
gi|401653690|gb|EJS71234.1| exodeoxyribonuclease [Bacillus cereus BAG2X1-1]
gi|401660118|gb|EJS77601.1| exodeoxyribonuclease [Bacillus cereus BAG2X1-3]
Length = 252
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 90/283 (31%), Positives = 146/283 (51%), Gaps = 39/283 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F ++ + D+ LQ L + Y +W+ A
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKLQGGQIDLNLEGYYTYWNYA 58
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ KK +P V++ L +++ +GRVI EFE FY++ Y PN+ K
Sbjct: 59 VKKGYSGTAIFTKK--EPLSVAYGL--GIEEHDQEGRVITLEFEDFYMITLYTPNS--KR 112
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R KW+ + ++ + KP+I+CGDLNV+H+EID+ +P
Sbjct: 113 GLERLDYRMKWEDDFRAYIKRLDEEKPVIFCGDLNVAHKEIDLKNP-------------- 158
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
K + PGF+ ER++F +L+EG +D YR+L+ D + +SW +G R K +
Sbjct: 159 -KSNRKNPGFSDEEREKFTRVLEEG-FVDTYRYLY--PDQEGAYSWWSYRMGA-RAKNIG 213
Query: 277 -RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
R+DYF+VSE +K++I ++ + GSDHCPV L +
Sbjct: 214 WRLDYFVVSERMKEQITDAKINSEVM------GSDHCPVELHI 250
>gi|403745673|ref|ZP_10954450.1| exodeoxyribonuclease III Xth [Alicyclobacillus hesperidum
URH17-3-68]
gi|403121241|gb|EJY55561.1| exodeoxyribonuclease III Xth [Alicyclobacillus hesperidum
URH17-3-68]
Length = 219
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 81/230 (35%), Positives = 121/230 (52%), Gaps = 32/230 (13%)
Query: 91 NYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNT 149
+YQ +W+ A+ K Y+GTA+ K P V + +E + EP+GR+I EFE Y++
Sbjct: 18 SYQQYWNYAEKKGYSGTAVFTK--IPPLSVRYGIEDDS---EPEGRIITLEFEACYVVTV 72
Query: 150 YAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAA 208
Y PN K + + R +W+ R + ++L KP+I CGDLNV+HEEID+ +
Sbjct: 73 YTPNA--KRDLSRLPYRLEWEDRFRAYLLHLDQNKPVIACGDLNVAHEEIDIKNA----- 125
Query: 209 AKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI 268
K + G GFT ER + +L G D +R+LH ++ D WS P
Sbjct: 126 ----------KSNRGNSGFTDEERSKMTQLLDAG-FTDTFRYLHPDR-ADAYTWWSNMPK 173
Query: 269 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
+ R RIDYF++S L+D+II + H + GSDHCP+ LE+
Sbjct: 174 VRERNIGWRIDYFLISNRLRDKIIDARIDAHVL------GSDHCPIVLEV 217
>gi|228940815|ref|ZP_04103375.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar berliner ATCC
10792]
gi|228973735|ref|ZP_04134313.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar thuringiensis
str. T01001]
gi|228980291|ref|ZP_04140602.1| Exodeoxyribonuclease [Bacillus thuringiensis Bt407]
gi|384187741|ref|YP_005573637.1| exodeoxyribonuclease III [Bacillus thuringiensis serovar chinensis
CT-43]
gi|410676060|ref|YP_006928431.1| exodeoxyribonuclease ExoA [Bacillus thuringiensis Bt407]
gi|452200118|ref|YP_007480199.1| Exodeoxyribonuclease III [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
gi|228779396|gb|EEM27652.1| Exodeoxyribonuclease [Bacillus thuringiensis Bt407]
gi|228785981|gb|EEM33982.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar thuringiensis
str. T01001]
gi|228818829|gb|EEM64894.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar berliner ATCC
10792]
gi|326941450|gb|AEA17346.1| exodeoxyribonuclease III [Bacillus thuringiensis serovar chinensis
CT-43]
gi|409175189|gb|AFV19494.1| exodeoxyribonuclease ExoA [Bacillus thuringiensis Bt407]
gi|452105511|gb|AGG02451.1| Exodeoxyribonuclease III [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
Length = 252
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 90/284 (31%), Positives = 146/284 (51%), Gaps = 39/284 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F ++ D+ LQ L + Y +W+ A
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESSADIFCLQEIKLQEGQIDLNLEGYYTYWNYA 58
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ KK +P V++ L +++ +GR+I EFE FY++ Y PN+ K
Sbjct: 59 VKKGYSGTAIFSKK--EPLSVTYGL--GIEEHDQEGRLITLEFEDFYMITLYTPNS--KR 112
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R KW+ + ++ + KP+I+CGDLNV+H+EID+ +P
Sbjct: 113 GLERLDYRMKWEDDFRSYIKRLDEKKPVIFCGDLNVAHKEIDLKNP-------------- 158
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
K + PGF+ ER++F IL+EG +D YR+L+ + + +SW +G R K +
Sbjct: 159 -KSNRKNPGFSDEEREKFTCILEEG-FVDTYRYLY--PNQEGAYSWWSYRMGA-RAKNIG 213
Query: 277 -RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
R+DYF+VSE +KD+I ++ + GSDHCPV L ++
Sbjct: 214 WRLDYFVVSERMKDQITEAKINSEVM------GSDHCPVELHIN 251
>gi|326202355|ref|ZP_08192224.1| exodeoxyribonuclease III [Clostridium papyrosolvens DSM 2782]
gi|325987473|gb|EGD48300.1| exodeoxyribonuclease III [Clostridium papyrosolvens DSM 2782]
Length = 253
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 96/280 (34%), Positives = 140/280 (50%), Gaps = 36/280 (12%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLAD 100
K V+WN N L + F +F D D+ +Q L + Y+ +W+ A
Sbjct: 3 KLVSWNVNGLRSCIGKG---FWDFFKEVDADIFCVQETKLQEGQLELEIEGYEHYWNYAV 59
Query: 101 SK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEE 159
K Y+GTA+ K K VS S +++ +GRVI EFE F+L+N Y PN+ K E
Sbjct: 60 KKGYSGTAIFTK----IKPVSSSCGIGIEEHDNEGRVITLEFEEFFLVNVYTPNS--KRE 113
Query: 160 ENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPN 218
+ R KW+ +E++ Q KP+I CGD+NV+H+EID+ +P N
Sbjct: 114 LERLEYRMKWEDDFREYLKQLEQTKPVIICGDMNVAHQEIDLKNPR------------SN 161
Query: 219 KEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRI 278
K GFT+ ER++F +L+ G +D +R L+ +K + WS + + RI
Sbjct: 162 KR---SAGFTMEEREKFSQLLEHG-FVDTFRMLYPDKTGAYTW-WSYMFKSREKNAGWRI 216
Query: 279 DYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
DYF VS LKDRI A E+ + GSDHCPV L +
Sbjct: 217 DYFCVSGALKDRIEAAEIYSDTM------GSDHCPVGLTI 250
>gi|452992928|emb|CCQ95587.1| apurinic/apyrimidinic endonuclease [Clostridium ultunense Esp]
Length = 250
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 94/281 (33%), Positives = 138/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K V+WN N L V+ F N+ D D+ +Q L Y +W+ A
Sbjct: 1 MKLVSWNVNGLRACVRKG---FLNYFEEVDADIFCVQETKLQEGQIDLNLPGYHQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K +P V + L +++ +GRVI EFE FYL+N Y PN+ +
Sbjct: 58 EKKGYSGTAVFTKD--KPLDVKYGL--GIEEHDKEGRVITLEFEDFYLVNVYTPNS--QR 111
Query: 159 EENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R W+ + ++ + S KP+I CGDLNV+H+EID+ +P
Sbjct: 112 ELTRLDYRMTWEDEFRNYLKELDSIKPVILCGDLNVAHKEIDLKNP------------ST 159
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
N+ + GFT ER + +L G ID +R+ + +K+ D WS + R R
Sbjct: 160 NRRN---AGFTDEERGKMTELLGTG-FIDTFRYFYPDKE-DAYTWWSYMRKARDRNVGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYFIVSE KDR+ ++ GSDHCPV LE+
Sbjct: 215 IDYFIVSERFKDRLKDAQIHSE------IMGSDHCPVMLEI 249
>gi|398816273|ref|ZP_10574926.1| exodeoxyribonuclease III [Brevibacillus sp. BC25]
gi|398032975|gb|EJL26295.1| exodeoxyribonuclease III [Brevibacillus sp. BC25]
Length = 254
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 91/283 (32%), Positives = 142/283 (50%), Gaps = 38/283 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ---ILMRALSSPPFKNYQIWWSL 98
+K ++WN N L V F ++ + D+ LQ + + + Y +W+
Sbjct: 2 MKLISWNVNGLRACVNKG---FYDYFKEANADIFCLQETKLQEGQIEMEIGEEYHQYWNY 58
Query: 99 ADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWK 157
A+ K Y+GTA+ + +P V + LE+ +EP+GRVI EF+ FYL+ Y PN K
Sbjct: 59 AEKKGYSGTAVFTR--MEPLSVRYGLEE---DHEPEGRVITLEFQDFYLVTVYTPNA--K 111
Query: 158 EEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVP 216
+ + R +W+ R + ++LQ KP++ CGDLNV+H+EID+ +
Sbjct: 112 RDLSRLDYRLEWEDRFRNYLLQLDAKKPVVVCGDLNVAHQEIDLKNA------------- 158
Query: 217 PNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM 276
K + GFT ER++ ++L G +D YR+ + ++ D WS P + R
Sbjct: 159 --KSNRNNSGFTPEEREKMTSLLAAG-FVDTYRYFYPDQ-TDAYTWWSFMPKVRERNIGW 214
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
RIDYF+ SE L A + G GI+ + GSDHCPV LE
Sbjct: 215 RIDYFLASERL-----APSLLGAGIDSQVL-GSDHCPVVLEFG 251
>gi|423418359|ref|ZP_17395448.1| exodeoxyribonuclease [Bacillus cereus BAG3X2-1]
gi|401106632|gb|EJQ14593.1| exodeoxyribonuclease [Bacillus cereus BAG3X2-1]
Length = 252
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 91/283 (32%), Positives = 145/283 (51%), Gaps = 39/283 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ-ILMRA--LSSPPFKNYQIWWSL 98
+K ++WN N L + F ++ + D+ LQ I +++ + P + Y W
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKLQSGQIDLNPEEYYTYWNYA 58
Query: 99 ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
Y+GTA+ KK +P V++ L +++ +GRVI EFE F+++ Y PN+ K
Sbjct: 59 VKKGYSGTAIFTKK--EPLSVTYGL--GIEEHDQEGRVITLEFEDFHMITLYTPNS--KR 112
Query: 159 EENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R KW+ + ++ + K P+I+CGDLNVSH+EID+ +P
Sbjct: 113 GLERLDYRMKWEDDFRAYIKRLDKKKPVIFCGDLNVSHKEIDLKNP-------------- 158
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
K + PGF+ ER++F IL+EG +D YRFL+ E+ + +SW +G R K +
Sbjct: 159 -KSNRKNPGFSDEEREKFTKILEEG-FVDTYRFLYPEQ--EGAYSWWSYRMGA-RAKNIG 213
Query: 277 -RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
R+DYF+ SE LK +I ++ GSDHCPV L +
Sbjct: 214 WRLDYFVTSERLKHKITDAKINSE------IMGSDHCPVELHM 250
>gi|320163204|gb|EFW40103.1| APEX nuclease [Capsaspora owczarzaki ATCC 30864]
Length = 429
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 95/298 (31%), Positives = 141/298 (47%), Gaps = 41/298 (13%)
Query: 29 TETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQIL------MR 82
T + + N K K WN N L +K ++ + PDV+ +Q +
Sbjct: 165 TTSRAAPNGKPINFKIACWNVNGLKNAIKEGCLQYLEYE---KPDVLCIQETKCGEGEIP 221
Query: 83 ALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFE 142
A S+ P Y W+S YAGT + K QP +VSF L +++ +GRVI AEF
Sbjct: 222 ADSAVP-GYYGYWYSAQKRGYAGTGMYSKT--QPIRVSFGLN--VPEHDTEGRVITAEFA 276
Query: 143 TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVS 201
FYL+ Y PN+G K E + R+ WD + ++L KP++ CGDLNV+H EID+
Sbjct: 277 DFYLVTAYVPNSGQKLE--TLPYRQTWDVAFRTYLLSLDAKKPVVLCGDLNVAHNEIDLK 334
Query: 202 HPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGF 261
+P K + GFT ER+ F IL +D++R L+ E+ +
Sbjct: 335 NP---------------KTNKRSAGFTPQEREGFTTILGT-EFVDSFRVLYPEESAYSFW 378
Query: 262 SWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
S+ N G R+DYF+VS+ + +++ YGSDHCP+ L LS
Sbjct: 379 SYRHNSRALNVG--WRLDYFVVSQRFMQSVADSQIRSQ------VYGSDHCPIVLHLS 428
>gi|423082270|ref|ZP_17070862.1| exodeoxyribonuclease III [Clostridium difficile 002-P50-2011]
gi|423087662|ref|ZP_17076048.1| exodeoxyribonuclease III [Clostridium difficile 050-P50-2011]
gi|357543976|gb|EHJ25982.1| exodeoxyribonuclease III [Clostridium difficile 050-P50-2011]
gi|357548596|gb|EHJ30456.1| exodeoxyribonuclease III [Clostridium difficile 002-P50-2011]
Length = 250
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 89/281 (31%), Positives = 142/281 (50%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+KF++WN N + V F +F D DV LQ L Y +W+ A
Sbjct: 1 MKFISWNVNGIRACVGKG---FLDFFKEVDADVFCLQETKLQEGQIELDLPGYFQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ KK +P KV + + +++ +GRVI EFE FY + Y PN+ +
Sbjct: 58 ERKGYSGTAIFTKK--EPLKVMYGI--NIEEHDKEGRVITLEFEDFYFVTVYTPNS--QS 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E + R +W+ +++ + KP+I CGD+NV+H+EID+ +P
Sbjct: 112 ELKRLEYRTRWEDDFIDYLTKLDNHKPVIVCGDMNVAHKEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GFT ER++F +L G ID YR+ + +K+ + WS + R
Sbjct: 158 -KNNMKNAGFTKEEREKFSKLLDSG-FIDTYRYFNPDKEGVYSW-WSYRFNARKNNAGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF S++L+DR+++ ++ + GSDHCPV LE+
Sbjct: 215 IDYFCASKKLEDRLVSADIHTEVL------GSDHCPVELEI 249
>gi|345018486|ref|YP_004820839.1| exodeoxyribonuclease III Xth [Thermoanaerobacter wiegelii Rt8.B1]
gi|344033829|gb|AEM79555.1| exodeoxyribonuclease III Xth [Thermoanaerobacter wiegelii Rt8.B1]
Length = 257
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 92/286 (32%), Positives = 147/286 (51%), Gaps = 39/286 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIA-----LQILMRALSSPPFKNYQIWW 96
+K V+WN N L ++ F ++ + D+ LQ L + Y +W
Sbjct: 1 MKLVSWNVNGLRACLQKG---FMDYFKKVNADIFCIQETKLQPHQTDLEELNLEGYYAFW 57
Query: 97 SLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNG 155
+ A+ K Y+GTA+ K ++P V++ + +++ +GRVI E+E FYL+NTY PN+
Sbjct: 58 NFAEKKAYSGTAVFTK--YKPLSVNYGI--GIPQHDNEGRVITLEYEKFYLVNTYTPNS- 112
Query: 156 WKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY 214
+ R +W++ + ++L+ S KP+I CGDLNV+H+EID+ +P +A + N
Sbjct: 113 -QRGLTRLSYRMEWEEDFRNYLLKLDSVKPIILCGDLNVAHKEIDIKNP---SANRRNA- 167
Query: 215 VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGK 274
GFT ER++ +L G ID +R+ + K D WS + +
Sbjct: 168 -----------GFTDEEREKMTMLLNSG-FIDTFRYFYPHKK-DAYTWWSYMRNAREKNI 214
Query: 275 RMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 320
RIDYFIVS+ LKD +I E+ + GSDHCPV LE+ +
Sbjct: 215 GWRIDYFIVSQRLKDYLIDAEIHSDVM------GSDHCPVVLEIDD 254
>gi|254168985|ref|ZP_04875824.1| exodeoxyribonuclease III [Aciduliprofundum boonei T469]
gi|197622091|gb|EDY34667.1| exodeoxyribonuclease III [Aciduliprofundum boonei T469]
Length = 255
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 93/284 (32%), Positives = 146/284 (51%), Gaps = 40/284 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPP-----FKNYQIWW 96
L ++WN N + V+N F +F+ + PD++ALQ + + P + +Y +W
Sbjct: 3 LLLISWNVNGIRACVRNG---FLDFLEKYKPDILALQEIKATEDNVPMEVRYYPDYHKYW 59
Query: 97 SLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNG 155
+ A K YAGTAL K +P V F + + K++ +GRVI AE+E FYL+N Y PN+
Sbjct: 60 NPAKKKGYAGTALFTK--IEPLNVKFGIGED--KFDSEGRVITAEYEKFYLVNAYFPNS- 114
Query: 156 WKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY 214
+ + ++DK I ++ + KP+I CGD NV+H+EID+++P
Sbjct: 115 -QHGLTRLDFKIEFDKLIHSYLNELRKKKPVILCGDFNVAHKEIDLANP----------- 162
Query: 215 VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGK 274
K++ GFT ER L++G ID +R KE W+ + R
Sbjct: 163 ----KQNVKNAGFTPQERAWMDKFLQDG-YIDTFRMFTKEGGHYTW--WTYRFKARERNI 215
Query: 275 RMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
R+DYF+VSEELKD++ + + L YGSDH P+++ L
Sbjct: 216 GWRVDYFVVSEELKDKVKSSWI------LSEVYGSDHAPIAMVL 253
>gi|229157316|ref|ZP_04285394.1| Exodeoxyribonuclease [Bacillus cereus ATCC 4342]
gi|228626043|gb|EEK82792.1| Exodeoxyribonuclease [Bacillus cereus ATCC 4342]
Length = 252
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 89/283 (31%), Positives = 146/283 (51%), Gaps = 37/283 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F ++ + D+ LQ L + Y +W+ A
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKLQDGQIDLNLEEYYTYWNYA 58
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ KK +P V++ L +++ +GRVI EFE FY++ Y PN+ K
Sbjct: 59 VKKGYSGTAIFSKK--EPLSVTYGL--GIEEHDQEGRVITLEFEDFYIITLYTPNS--KR 112
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R KW+ + ++ + KP+++CGDLNV+H+EID+ +P
Sbjct: 113 GLERLDYRMKWEDDFRVYIKRLDEKKPVVFCGDLNVAHKEIDLKNP-------------- 158
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG-KYRGKRM 276
K + PGF+ ER++F IL+EG ID YR+L+ + + +SW +G + +
Sbjct: 159 -KSNRKNPGFSDEEREKFTCILEEG-FIDTYRYLY--PNQEGAYSWWSYRMGARVKNIGW 214
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
R+DYF+VSE +KD+I ++ + GSDHCPV L ++
Sbjct: 215 RLDYFVVSERMKDQITEAKINSEVM------GSDHCPVELHIN 251
>gi|421858846|ref|ZP_16291099.1| exonuclease III [Paenibacillus popilliae ATCC 14706]
gi|410831608|dbj|GAC41536.1| exonuclease III [Paenibacillus popilliae ATCC 14706]
Length = 257
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 90/285 (31%), Positives = 145/285 (50%), Gaps = 40/285 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ---ILMRALSSPPFKNYQIWWSL 98
+K ++WN N L V F ++ D D+ +Q + + + Y+ +W+
Sbjct: 1 MKLISWNVNGLRACVNKG---FLDYFKASDADIFCVQETKLQEGQIGIELGEPYRKYWNY 57
Query: 99 ADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWK 157
A+ K Y+GTA+ + +P+ V + +E+ A EP+GR+I EFE+FYL+ Y PN K
Sbjct: 58 AEKKGYSGTAIFTR--IEPQSVRYGMEEDA---EPEGRIITLEFESFYLVTVYTPNA--K 110
Query: 158 EEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVP 216
+ + + R +W++R + ++ + KP+I CGDLNV+H+EID+ +
Sbjct: 111 RDLSRLEYRLEWEERFRRYLQELDAHKPVIVCGDLNVAHQEIDLKNA------------- 157
Query: 217 PNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKR 275
K + G GFT ER + +L+ G ID +R H+ D ++ WS P + R
Sbjct: 158 --KSNQGNSGFTPEERDKMTRLLEAG-FIDTFR--HRYPDRTDAYTWWSFMPKVRERNIG 212
Query: 276 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 320
RIDYF+VS L D I ++ GSDHCPV LE+ +
Sbjct: 213 WRIDYFLVSARLNDFIKDAKIDA------AITGSDHCPVILEMED 251
>gi|160933576|ref|ZP_02080964.1| hypothetical protein CLOLEP_02430 [Clostridium leptum DSM 753]
gi|156867453|gb|EDO60825.1| exodeoxyribonuclease III [Clostridium leptum DSM 753]
Length = 261
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 97/289 (33%), Positives = 146/289 (50%), Gaps = 38/289 (13%)
Query: 35 ENSKKD-PLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKN 91
E+ K D P++F++WN N L + +PEF D D+ LQ L +
Sbjct: 4 EHEKGDYPMRFISWNVNGLRACLTKGFPEF---FQQIDADIFCLQETKLQQGQVEMVLPG 60
Query: 92 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 150
Y+ +W+ A K Y+GTA+ KK +P VS+ L +++ +GRVI EF FYL Y
Sbjct: 61 YRQYWNSAVKKGYSGTAVFSKK--EPLSVSYGL--GIEEHDQEGRVITLEFPAFYLTTVY 116
Query: 151 APNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAA 209
PN+ +E R +W+ ++++ S KP++ CGD+NV+H+EID+ +P
Sbjct: 117 TPNS--QEGLKRLSYRMEWEDAFRDYLKGLDSKKPVVVCGDMNVAHQEIDLKNP------ 168
Query: 210 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 269
K + GFT ER+RF +L G ID+YR L+ EK +S+ N
Sbjct: 169 ---------KTNRKNAGFTDEERERFSQLLAAG-FIDSYRSLYPEKIEYSWWSYRFNARK 218
Query: 270 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
G RIDYF+VS+ + RI ++ + GSDHCPV L+L
Sbjct: 219 NNAG--WRIDYFLVSDRIGGRIQDAKIHTQVM------GSDHCPVELDL 259
>gi|423616001|ref|ZP_17591835.1| exodeoxyribonuclease [Bacillus cereus VD115]
gi|401260538|gb|EJR66711.1| exodeoxyribonuclease [Bacillus cereus VD115]
Length = 252
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 91/284 (32%), Positives = 145/284 (51%), Gaps = 39/284 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F ++ + D+ LQ L + Y +W+ A
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEASNADIFCLQEIKLQSGQIDLNLEGYYTYWNYA 58
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ KK +P V++ L +++ +GRVI EFE FY++ Y PN+ K
Sbjct: 59 VKKGYSGTAIFTKK--EPLSVTYGL--GIEEHDQEGRVITLEFEDFYMITLYTPNS--KR 112
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R +W+ + ++ Q KP+I+CGDLNV+H+EID+ +P
Sbjct: 113 GLERLDYRMEWEDDFRAYIKQLDEKKPVIFCGDLNVAHKEIDLKNP-------------- 158
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
K + PGF+ ER++F IL+EG +D YR L+ D + +SW +G R K +
Sbjct: 159 -KSNRKNPGFSDEEREKFTRILEEG-FVDTYRHLY--PDQEGAYSWWSYRMGA-RAKNIG 213
Query: 277 -RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
R+DYF+VS+ +K +I ++ I GSDHCPV L ++
Sbjct: 214 WRLDYFVVSDRIKGQITDAKINSEII------GSDHCPVELHIN 251
>gi|374604001|ref|ZP_09676972.1| exodeoxyribonuclease III [Paenibacillus dendritiformis C454]
gi|374390357|gb|EHQ61708.1| exodeoxyribonuclease III [Paenibacillus dendritiformis C454]
Length = 264
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 92/297 (30%), Positives = 149/297 (50%), Gaps = 40/297 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ---ILMRALSSPPFKNYQIWWSL 98
+K ++WN N L V F ++ D D+ +Q + + ++Y+ +W+
Sbjct: 1 MKLISWNVNGLRACVNKG---FIDYFKASDADIFCVQETKLQEGQICLELGESYRQYWNY 57
Query: 99 ADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWK 157
A+ K Y+GTA+ + +P V + +E+ EP+GR+I EFE+FYL+ Y PN K
Sbjct: 58 AEKKGYSGTAVFTR--IEPLSVRYGMEEDR---EPEGRMITLEFESFYLVTVYTPNA--K 110
Query: 158 EEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVP 216
+ + + R +W++R + ++ + KP+I CGDLNV+H+E+D+ +
Sbjct: 111 RDLSRLEYRLEWEERFRRYLQELDARKPVIVCGDLNVAHQEMDLKNA------------- 157
Query: 217 PNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKR 275
K + G GFT ER + +L G D +R H+ D ++ WS P + R
Sbjct: 158 --KSNHGNSGFTPEERDKMTRLLDAG-FTDTFR--HRYPDRTDAYTWWSFMPKVRERNIG 212
Query: 276 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEASSDSEKREKKN 332
RIDYF+VS LK+ I E+ GSDHCPV LE+ + +S KR + N
Sbjct: 213 WRIDYFLVSARLKEYIKDAEIDA------AITGSDHCPVILEMEDLPVESPKRGEHN 263
>gi|384136257|ref|YP_005518971.1| exodeoxyribonuclease III Xth [Alicyclobacillus acidocaldarius
subsp. acidocaldarius Tc-4-1]
gi|339290342|gb|AEJ44452.1| exodeoxyribonuclease III Xth [Alicyclobacillus acidocaldarius
subsp. acidocaldarius Tc-4-1]
Length = 260
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 96/292 (32%), Positives = 144/292 (49%), Gaps = 38/292 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ---ILMRALSSPPFKNYQIWWSL 98
+KFV+WN N L R N F + + D DV +Q + + P + YQ +W+
Sbjct: 1 MKFVSWNVNGL--RACVNKGAFLPYFESVDADVFCVQETKLQAGQIQLPIGEAYQQFWNY 58
Query: 99 ADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWK 157
A+ K Y+GTA+ + P V + +P+GR+I EF +FY++ Y PN K
Sbjct: 59 AERKGYSGTAVFTR--MPPLDVRYGFGNGV---DPEGRIITLEFPSFYVVTVYTPNA--K 111
Query: 158 EEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVP 216
+ + R +W+ + ++ KP+I CGDLNV+H+EID+ +
Sbjct: 112 RDLSRLPYRLEWEDAFRAYLCALDREKPVIACGDLNVAHQEIDIKNA------------- 158
Query: 217 PNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM 276
K + G GFT ER + +L G +D +R L+ + D WS P + R
Sbjct: 159 --KSNRGNSGFTDEERAKMTELLDAG-FVDTFRALYPDV-TDKYTWWSNMPRVRERNIGW 214
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS-EASSDSEK 327
RIDYF+VSE L+D I+ + H + GSDHCPV LE++ EA DS K
Sbjct: 215 RIDYFLVSERLRDCILDARIDDHVL------GSDHCPVVLEMALEAWKDSGK 260
>gi|13162337|ref|NP_077062.1| DNA-(apurinic or apyrimidinic site) lyase [Rattus norvegicus]
gi|1168468|sp|P43138.2|APEX1_RAT RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; AltName: Full=REF-1; AltName: Full=Redox
factor-1; Contains: RecName: Full=DNA-(apurinic or
apyrimidinic site) lyase, mitochondrial
gi|11878235|gb|AAG40859.1|AF309114_1 nuclease APEX [Rattus norvegicus]
gi|624915|dbj|BAA07938.1| APEX nuclease [Rattus norvegicus]
gi|5360709|dbj|BAA82124.1| Apex nuclease [Rattus norvegicus]
gi|50926078|gb|AAH78816.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Rattus
norvegicus]
gi|149033628|gb|EDL88426.1| apurinic/apyrimidinic endonuclease 1, isoform CRA_a [Rattus
norvegicus]
Length = 317
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 98/323 (30%), Positives = 163/323 (50%), Gaps = 45/323 (13%)
Query: 6 KPIEKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSN 65
K EKE + + P L D +T+ + K LK +WN + L +K + +
Sbjct: 30 KKTEKEAAGEGPVLYEDPPDQKTSASG-----KSATLKICSWNVDGLRAWIKK---KGLD 81
Query: 66 FITTFDPDVIALQ-------ILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPK 117
++ PD++ LQ L L P +Q W + +D + Y+G LL ++C P
Sbjct: 82 WVKEEAPDILCLQETKCSENKLPAELQELPGLTHQYWSAPSDKEGYSGVGLLSRQC--PL 139
Query: 118 KVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV 177
KVS+ + + +++ +GRVI+AEFE+F L+ Y PN G + R++WD+ ++F+
Sbjct: 140 KVSYGIGEE--EHDQEGRVIVAEFESFILVTAYVPNAG--RGLVRLEYRQRWDEAFRKFL 195
Query: 178 LQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFG 236
S KPL+ CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG
Sbjct: 196 KDLASRKPLVLCGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFG 240
Query: 237 AILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEM 296
+L+ L D++R L+ F W+ + + R+DYF++S L + ++
Sbjct: 241 EMLQAVPLADSFRHLYPNTAYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKI 299
Query: 297 QGHGIELEGFYGSDHCPVSLELS 319
+ + GSDHCP++L L+
Sbjct: 300 RSKAL------GSDHCPITLYLA 316
>gi|6753086|ref|NP_033817.1| DNA-(apurinic or apyrimidinic site) lyase [Mus musculus]
gi|113985|sp|P28352.2|APEX1_MOUSE RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; AltName: Full=REF-1; AltName: Full=Redox
factor-1; Contains: RecName: Full=DNA-(apurinic or
apyrimidinic site) lyase, mitochondrial
gi|220337|dbj|BAA14382.1| APEX nuclease precursor [Mus musculus]
gi|533108|gb|AAC13769.1| apurinic/apyrimidinic endonuclease [Mus musculus]
gi|533329|dbj|BAA07270.1| APEX nuclease [Mus musculus]
gi|12850573|dbj|BAB28774.1| unnamed protein product [Mus musculus]
gi|30851442|gb|AAH52401.1| Apurinic/apyrimidinic endonuclease 1 [Mus musculus]
gi|148688888|gb|EDL20835.1| apurinic/apyrimidinic endonuclease 1 [Mus musculus]
Length = 317
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 98/323 (30%), Positives = 163/323 (50%), Gaps = 45/323 (13%)
Query: 6 KPIEKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSN 65
K EKE + + P L D +T+ + K LK +WN + L +K + +
Sbjct: 30 KKTEKEAAGEGPVLYEDPPDQKTSPSG-----KSATLKICSWNVDGLRAWIKK---KGLD 81
Query: 66 FITTFDPDVIALQ-------ILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPK 117
++ PD++ LQ L L P +Q W + +D + Y+G LL ++C P
Sbjct: 82 WVKEEAPDILCLQETKCSENKLPAELQELPGLTHQYWSAPSDKEGYSGVGLLSRQC--PL 139
Query: 118 KVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV 177
KVS+ + + +++ +GRVI+AEFE+F L+ Y PN G + R++WD+ ++F+
Sbjct: 140 KVSYGIGEE--EHDQEGRVIVAEFESFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFL 195
Query: 178 LQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFG 236
S KPL+ CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG
Sbjct: 196 KDLASRKPLVLCGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFG 240
Query: 237 AILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEM 296
+L+ L D++R L+ F W+ + + R+DYF++S L + ++
Sbjct: 241 ELLQAVPLADSFRHLYPNTAYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKI 299
Query: 297 QGHGIELEGFYGSDHCPVSLELS 319
+ + GSDHCP++L L+
Sbjct: 300 RSKAL------GSDHCPITLYLA 316
>gi|156362086|ref|XP_001625612.1| predicted protein [Nematostella vectensis]
gi|156212454|gb|EDO33512.1| predicted protein [Nematostella vectensis]
Length = 257
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 99/290 (34%), Positives = 151/290 (52%), Gaps = 42/290 (14%)
Query: 38 KKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPP----FKNYQ 93
+K K +WN N L +KNN +F++ DPDV +Q AL+ P Y
Sbjct: 1 RKSNFKITSWNVNGLRAWLKNN---SKSFVSKEDPDVFCIQETKCALADIPKEAKLAGYH 57
Query: 94 IWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAP 152
+W+ A+ K Y+G L KK +P KVS+ + +++ +GRVI AE+E F+L+ +Y P
Sbjct: 58 CYWNSAEQKGYSGVGLCSKK--EPIKVSYGMGNK--EHDKEGRVITAEYEDFHLVTSYVP 113
Query: 153 NNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKL 211
N+G + R++W+K ++ + KP+I CGDLNV+H++ID+++P
Sbjct: 114 NSGRGLPRLGY--RQQWNKDFLSYLKKLDEIKPVILCGDLNVAHKDIDLANP-------- 163
Query: 212 NGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKY 271
K + GFT ER F +L EG D +R L+ +K F WS +G
Sbjct: 164 -------KTNTRTAGFTKEERADFTTLLGEG-FKDTFRELYPDKKSAYTF-WS--YMGGA 212
Query: 272 RGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
R K + R+DYF+VS+ L ++ C+ I GSDHCP+SL LS
Sbjct: 213 RAKNVGWRLDYFVVSDRLVPKV--CD----SIIRSRVMGSDHCPLSLLLS 256
>gi|229018928|ref|ZP_04175771.1| Exodeoxyribonuclease [Bacillus cereus AH1273]
gi|229025172|ref|ZP_04181596.1| Exodeoxyribonuclease [Bacillus cereus AH1272]
gi|423390009|ref|ZP_17367235.1| exodeoxyribonuclease [Bacillus cereus BAG1X1-3]
gi|228736105|gb|EEL86676.1| Exodeoxyribonuclease [Bacillus cereus AH1272]
gi|228742371|gb|EEL92528.1| Exodeoxyribonuclease [Bacillus cereus AH1273]
gi|401640925|gb|EJS58651.1| exodeoxyribonuclease [Bacillus cereus BAG1X1-3]
Length = 252
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 91/283 (32%), Positives = 144/283 (50%), Gaps = 39/283 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPF--KNYQIWWSLA 99
+K ++WN N L + F ++ + D+ LQ + + Y +W+ A
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKLQSGQIDLNPEGYYTYWNYA 58
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ KK +P V++ L +++ +GRVI EFE F+++ Y PN+ K
Sbjct: 59 VKKGYSGTAIFTKK--EPLSVTYGL--GIDEHDQEGRVITLEFEDFHMITLYTPNS--KR 112
Query: 159 EENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R KW+ + ++ + K P+I+CGDLNVSH+EID+ +P
Sbjct: 113 GLERLDYRMKWEDDFRAYIKRLDKKKPVIFCGDLNVSHKEIDLKNP-------------- 158
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
K + PGF+ ER++F IL+EG +D YRFL+ E+ + +SW +G R K +
Sbjct: 159 -KSNRKNPGFSDEEREKFTKILEEG-FVDTYRFLYPEQ--EGAYSWWSYRMGA-RAKNIG 213
Query: 277 -RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
R+DYF+ SE LK +I ++ GSDHCPV L +
Sbjct: 214 WRLDYFVTSERLKHKITDAKINSE------IMGSDHCPVELHM 250
>gi|444522078|gb|ELV13303.1| DNA-(apurinic or apyrimidinic site) lyase [Tupaia chinensis]
Length = 318
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 97/320 (30%), Positives = 165/320 (51%), Gaps = 45/320 (14%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
EKE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 EKEAAGEVPALYEDPPDQKTSSSG-----KSATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQ-------ILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVS 120
PD++ LQ L L P ++Q W + +D + Y+G LL ++C P KVS
Sbjct: 86 EEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVS 143
Query: 121 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ- 179
+ + + +++ +GRVI+AEF+ F L+ Y PN G + R++WD+ ++F+
Sbjct: 144 YGIGEE--EHDQEGRVIVAEFDKFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGL 199
Query: 180 CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 239
S KPL+ CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L
Sbjct: 200 ASRKPLVLCGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELL 244
Query: 240 KEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGH 299
+ L D++R L+ + F W+ + + R+DYF++S+ L + +++
Sbjct: 245 QAVPLTDSFRHLYPDTPYAYTF-WTYMMNARSKNVGWRLDYFLLSQSLLPALCDSKIRSK 303
Query: 300 GIELEGFYGSDHCPVSLELS 319
+ GSDHCP++L L+
Sbjct: 304 AL------GSDHCPITLYLA 317
>gi|340617816|ref|YP_004736269.1| exodeoxyribonuclease III [Zobellia galactanivorans]
gi|339732613|emb|CAZ95881.1| Exodeoxyribonuclease III [Zobellia galactanivorans]
Length = 256
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 93/288 (32%), Positives = 150/288 (52%), Gaps = 43/288 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ-------ILMRALSSPPFKNYQI 94
+K V+WN N + VK + E +++FD DV +Q + AL+ +Y++
Sbjct: 1 MKLVSWNVNGIRASVKKGFEEV---VSSFDADVFCVQETKAQDDQVKEALAG--ISDYEL 55
Query: 95 WWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPN 153
+ + A+ K Y+GTA+L KK K ++F+++ +++ +GR+ E+E F+L+N Y PN
Sbjct: 56 FCNSAEKKGYSGTAILSKK----KPLTFTVDMGKEEHDTEGRITHVEYEEFHLVNVYVPN 111
Query: 154 NGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLN 212
+G + + R WDK ++ + S KPLI GD NV+H D+++P
Sbjct: 112 SGSGLKRLDY--RSIWDKDFTAYLKKLSESKPLIITGDFNVAHTANDLANP--------- 160
Query: 213 GYVPPNKEDWGQP-GFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKY 271
K ++ + GFT E F AILKE L+D++R LH F WS +
Sbjct: 161 ------KSNYNKTSGFTQVEIDGFDAILKELNLVDSFRTLHPTTFHKYTF-WSMRGGARG 213
Query: 272 RGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
R RIDYF+VSE + ++ + E+ + GSDHCP+SLE+S
Sbjct: 214 RNVGWRIDYFLVSESIWPKVQSAEIH------DQVMGSDHCPISLEIS 255
>gi|258512235|ref|YP_003185669.1| exodeoxyribonuclease III Xth [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
gi|257478961|gb|ACV59280.1| exodeoxyribonuclease III Xth [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
Length = 252
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 93/282 (32%), Positives = 137/282 (48%), Gaps = 37/282 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ---ILMRALSSPPFKNYQIWWSL 98
++FV+WN N L R N F + + D DV +Q + + P + YQ +W+
Sbjct: 1 MRFVSWNVNGL--RACVNKGAFLPYFESADADVFCIQETKLQAGQIELPIGEAYQQFWNY 58
Query: 99 ADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWK 157
A+ K Y+GTA+ + P V + +P+GR+I EF +FY++ Y PN K
Sbjct: 59 AERKGYSGTAVFTR--ITPLDVRYGFGDGN---DPEGRIITLEFPSFYVVTVYTPNA--K 111
Query: 158 EEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVP 216
+ + R +W+ ++ KP+I CGDLNV+HEEID+ +
Sbjct: 112 RDLSRLPYRLEWEDAFCAYLCALDREKPVIACGDLNVAHEEIDIKNA------------- 158
Query: 217 PNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM 276
K + G GFT ER + +L G +D +R LH D WS P + R
Sbjct: 159 --KSNRGNSGFTDEERAKMTELLAAG-FVDTFRALHPNV-TDKYTWWSNMPGVRERNIGW 214
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF+VSE L+DRI+ + H + GSDHCPV LE+
Sbjct: 215 RIDYFLVSERLRDRILDARIDDHVL------GSDHCPVVLEV 250
>gi|429726547|ref|ZP_19261335.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 473 str. F0040]
gi|429146016|gb|EKX89089.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 473 str. F0040]
Length = 267
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 92/288 (31%), Positives = 138/288 (47%), Gaps = 40/288 (13%)
Query: 35 ENSKKDPLKFVTWNANSL-LLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKN 91
E K +KF++WN N L R K F D D LQ L F
Sbjct: 11 ETHKNSMMKFISWNVNGLRACREKG----FEESFAQLDADCFCLQETKLQEGQIDIAFDG 66
Query: 92 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 150
Y+ +W+ A+ K Y+GT + + +P V + L +++ +GRVI EFE YLL Y
Sbjct: 67 YESYWNYAEKKGYSGTCIFTR--IKPLSVRYGL--GIEEHDHEGRVITLEFEDLYLLTVY 122
Query: 151 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAA 209
PN+ ++ R WD + +V Q KP++ CGDLNV+H+EID+ +P
Sbjct: 123 TPNS--QDGLRRLDYRMTWDDDFRAYVQQLDAHKPVVICGDLNVAHQEIDLKNP------ 174
Query: 210 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPI 268
K + GFT ER++F +L+ G D YRF + D+ +S WS
Sbjct: 175 ---------KTNRKNAGFTDEERQKFSQLLEAG-FTDTYRFFN--PDLTDSYSWWSYRFK 222
Query: 269 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
+ + RIDYF+ S+ L DR+++ ++ + +GSDHCPV L
Sbjct: 223 AREKNAGWRIDYFVTSQSLNDRLVSADIH------QEIFGSDHCPVEL 264
>gi|423518373|ref|ZP_17494854.1| exodeoxyribonuclease [Bacillus cereus HuA2-4]
gi|401161100|gb|EJQ68468.1| exodeoxyribonuclease [Bacillus cereus HuA2-4]
Length = 252
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 88/284 (30%), Positives = 146/284 (51%), Gaps = 39/284 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPF--KNYQIWWSLA 99
+K ++WN N L + F ++ + D+ LQ + + Y +W+ A
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEKSNADIFCLQEIKLQSGQIDLNPEGYYTYWNYA 58
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ KK +P V++ L +++ +GRVI EF+ FY++ Y PN+ K
Sbjct: 59 VKKGYSGTAIFTKK--EPISVTYGL--GIEEHDQEGRVITLEFDDFYMITLYTPNS--KR 112
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R +W+ + ++ + KP+++CGDLNV+H+EID+ +P
Sbjct: 113 GLERVDYRMEWEDDFRAYIKRLDEKKPVVFCGDLNVAHKEIDLKNP-------------- 158
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
K + PGF+ ER++F IL+EG +D YR+L+ D + +SW +G R K +
Sbjct: 159 -KSNRKNPGFSDEEREKFTRILEEG-FVDTYRYLY--PDQEGAYSWWSYRMGA-RAKNIG 213
Query: 277 -RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
R+DYF+VSE +KD+I ++ GSDHCPV L ++
Sbjct: 214 WRLDYFVVSERMKDKITEAKINSE------IMGSDHCPVELHIN 251
>gi|339443513|ref|YP_004709518.1| hypothetical protein CXIVA_24490 [Clostridium sp. SY8519]
gi|338902914|dbj|BAK48416.1| hypothetical protein CXIVA_24490 [Clostridium sp. SY8519]
Length = 289
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 89/290 (30%), Positives = 149/290 (51%), Gaps = 36/290 (12%)
Query: 34 EENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKN 91
++N ++ +KF++WN N + V F ++ D D+ LQ L + +
Sbjct: 32 QKNRRRIGMKFISWNVNGIRACVNKG---FLDYFHAADADIFCLQETKLQEGQLALDLEG 88
Query: 92 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 150
Y +W+ A+ K Y+GTA+ K+ +P VS+ L A ++ +GRVI E+ETFY + Y
Sbjct: 89 YFQYWNYAEKKGYSGTAVFTKE--EPLSVSYGLGIEA--HDQEGRVITLEYETFYFVTVY 144
Query: 151 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAA 209
PN+ + E R +W+ + ++ KP+I CGD+NV+H+EID+ +P
Sbjct: 145 TPNS--QSELKRLDYRMEWEDDFRAYLTGLDREKPVIVCGDMNVAHQEIDLKNP------ 196
Query: 210 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 269
K + GFT ER++F +L G ID +R+ + +++ + WS
Sbjct: 197 ---------KTNRKNAGFTDEERQKFTELLDSG-WIDTWRYFYPDQEGVYSW-WSYRFKA 245
Query: 270 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
+ + RIDYF+VS+ LKDR+ ++ + GSDHCPV L+L+
Sbjct: 246 REKNAGWRIDYFLVSDRLKDRLTDAKIHTEVM------GSDHCPVELDLN 289
>gi|260682949|ref|YP_003214234.1| exodeoxyribonuclease [Clostridium difficile CD196]
gi|260686547|ref|YP_003217680.1| exodeoxyribonuclease [Clostridium difficile R20291]
gi|260209112|emb|CBA62286.1| putative exodeoxyribonuclease [Clostridium difficile CD196]
gi|260212563|emb|CBE03542.1| putative exodeoxyribonuclease [Clostridium difficile R20291]
Length = 255
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 142/281 (50%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+KF++WN N + V F +F D D+ LQ L Y +W+ A
Sbjct: 6 MKFISWNVNGIRACVGKG---FLDFFKEVDADIFCLQETKLQEGQIELDLPGYFQYWNYA 62
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ KK +P KV + + +++ +GRVI EFE FY + Y PN+ +
Sbjct: 63 ERKGYSGTAIFTKK--EPLKVMYGI--NIEEHDKEGRVITLEFEDFYFVTVYTPNS--QS 116
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E + R +W+ +++ + KP+I CGD+NV+H+EID+ +P
Sbjct: 117 ELKRLEYRTRWEDDFIDYLTKLDNHKPVIVCGDMNVAHKEIDLKNP-------------- 162
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GFT ER++F +L G ID YR+ + +K+ + WS + R
Sbjct: 163 -KNNMKNAGFTKEEREKFSKLLDSG-FIDTYRYFNPDKEGVYSW-WSYRFNARKNNAGWR 219
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF S++L+DR+++ ++ + GSDHCPV LE+
Sbjct: 220 IDYFCASKKLEDRLVSADIHTEIL------GSDHCPVELEI 254
>gi|374308939|ref|YP_005055370.1| exodeoxyribonuclease III [Filifactor alocis ATCC 35896]
gi|291165919|gb|EFE27966.1| exodeoxyribonuclease III [Filifactor alocis ATCC 35896]
Length = 251
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 90/282 (31%), Positives = 142/282 (50%), Gaps = 38/282 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N + VK F +F D D+ LQ L + Y +W+ A
Sbjct: 1 MKLISWNVNGIRACVKKG---FLDFFKETDADIFCLQETKLQEGQIELELEGYHQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K+ +P VS+ L +++ +GRVI EF+ FY++ Y PN+ K
Sbjct: 58 ERKGYSGTAIFTKQ--EPLSVSYGL--GIEEHDQEGRVITLEFDNFYMVTVYTPNS--KN 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R W+ + ++L+ + KP+I CGDLNV+H+EID+ +P
Sbjct: 112 ELLRLDYRMVWEDEFRSYLLRLNETKPVIVCGDLNVAHQEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
K + GFTI ER + +L G ID +RF + E ++ +S WS +
Sbjct: 158 -KTNQKNAGFTIEERTKMSTLLDSG-FIDTFRFFYPE--LEGAYSWWSYRFNARKNNAGW 213
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF+ S+ELK+ + ++ + GSDHCPV L++
Sbjct: 214 RIDYFLTSQELKENLKDAKIHSDIL------GSDHCPVELDI 249
>gi|126698940|ref|YP_001087837.1| exodeoxyribonuclease [Clostridium difficile 630]
gi|254974886|ref|ZP_05271358.1| putative exodeoxyribonuclease [Clostridium difficile QCD-66c26]
gi|255092273|ref|ZP_05321751.1| putative exodeoxyribonuclease [Clostridium difficile CIP 107932]
gi|255100359|ref|ZP_05329336.1| putative exodeoxyribonuclease [Clostridium difficile QCD-63q42]
gi|255306301|ref|ZP_05350472.1| putative exodeoxyribonuclease [Clostridium difficile ATCC 43255]
gi|255314013|ref|ZP_05355596.1| putative exodeoxyribonuclease [Clostridium difficile QCD-76w55]
gi|255516693|ref|ZP_05384369.1| putative exodeoxyribonuclease [Clostridium difficile QCD-97b34]
gi|255649791|ref|ZP_05396693.1| putative exodeoxyribonuclease [Clostridium difficile QCD-37x79]
gi|306519893|ref|ZP_07406240.1| putative exodeoxyribonuclease [Clostridium difficile QCD-32g58]
gi|384360536|ref|YP_006198388.1| exodeoxyribonuclease III [Clostridium difficile BI1]
gi|423090927|ref|ZP_17079213.1| exodeoxyribonuclease III [Clostridium difficile 70-100-2010]
gi|115250377|emb|CAJ68199.1| Exodeoxyribonuclease [Clostridium difficile 630]
gi|357556042|gb|EHJ37664.1| exodeoxyribonuclease III [Clostridium difficile 70-100-2010]
Length = 250
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 142/281 (50%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+KF++WN N + V F +F D D+ LQ L Y +W+ A
Sbjct: 1 MKFISWNVNGIRACVGKG---FLDFFKEVDADIFCLQETKLQEGQIELDLPGYFQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ KK +P KV + + +++ +GRVI EFE FY + Y PN+ +
Sbjct: 58 ERKGYSGTAIFTKK--EPLKVMYGI--NIEEHDKEGRVITLEFEDFYFVTVYTPNS--QS 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E + R +W+ +++ + KP+I CGD+NV+H+EID+ +P
Sbjct: 112 ELKRLEYRTRWEDDFIDYLTKLDNHKPVIVCGDMNVAHKEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GFT ER++F +L G ID YR+ + +K+ + WS + R
Sbjct: 158 -KNNMKNAGFTKEEREKFSKLLDSG-FIDTYRYFNPDKEGVYSW-WSYRFNARKNNAGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF S++L+DR+++ ++ + GSDHCPV LE+
Sbjct: 215 IDYFCASKKLEDRLVSADIHTEIL------GSDHCPVELEI 249
>gi|210622632|ref|ZP_03293292.1| hypothetical protein CLOHIR_01240 [Clostridium hiranonis DSM 13275]
gi|210154133|gb|EEA85139.1| hypothetical protein CLOHIR_01240 [Clostridium hiranonis DSM 13275]
Length = 250
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 90/282 (31%), Positives = 141/282 (50%), Gaps = 38/282 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+KF++WN N L V F +F D D+ LQ L + Y+ +W+ A
Sbjct: 1 MKFISWNVNGLRACVTKG---FMDFFNEVDADIFCLQETKLQEGQIDLNPEGYESYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
D K Y+GTA+ KK +P V++ + +++ +GRVI EFE FY + Y PN+ +
Sbjct: 58 DKKGYSGTAIFTKK--KPLSVAYGI--GIDEHDHEGRVITLEFEDFYFVTVYTPNS--QT 111
Query: 159 EENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E + R +W+ + ++ S KP++ CGDLNV+H+EID+ +P
Sbjct: 112 ELKRLEYRMRWEDDFRAYLKNLDSKKPVVMCGDLNVAHKEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
K + GFT ER +F L+ G ID +R+ + D + +S WS +
Sbjct: 158 -KTNRKNAGFTDEERNKFTEFLESG-FIDTFRYFY--PDAEGMYSWWSYRFNARKNNAGW 213
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF SE +KDR+++ ++ + GSDHCPV L +
Sbjct: 214 RIDYFCTSESMKDRLVSAKIHNEVL------GSDHCPVELVI 249
>gi|288556715|ref|YP_003428650.1| exodeoxyribonuclease [Bacillus pseudofirmus OF4]
gi|288547875|gb|ADC51758.1| exodeoxyribonuclease [Bacillus pseudofirmus OF4]
Length = 251
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 90/281 (32%), Positives = 144/281 (51%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L VK F +F + D+ LQ L Y +W+ A
Sbjct: 1 MKLISWNVNGLRACVKKG---FLDFFHEQNADIFCLQETKLQEGQIELELDGYHQFWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ K+ +P V + + + L+ E +GR+I EF++FYL+N Y N K
Sbjct: 58 LKKGYSGTAVFTKQ--KPISVRYGVGE--LESEDEGRIITLEFDSFYLVNVYTINA--KR 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ + R +W+ ++E++L KP+++CGDLNV+H E+D+ +
Sbjct: 112 DLSRLPERLEWEDALKEYLLDLDRHKPVVYCGDLNVAHAEVDLKNA-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
+ + G GFT+ ER + +L+ G ID++R+L+ E+ D WS + R R
Sbjct: 158 -RSNHGNSGFTLEERGKMTTLLESG-FIDSFRYLYPER-TDAFTWWSYMRDVRARNIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYFIVS +LK++I + + GSDHCP+ LEL
Sbjct: 215 IDYFIVSTQLKEKINEASIYAEVL------GSDHCPIGLEL 249
>gi|254166764|ref|ZP_04873618.1| exodeoxyribonuclease III [Aciduliprofundum boonei T469]
gi|289596498|ref|YP_003483194.1| exodeoxyribonuclease III [Aciduliprofundum boonei T469]
gi|197624374|gb|EDY36935.1| exodeoxyribonuclease III [Aciduliprofundum boonei T469]
gi|289534285|gb|ADD08632.1| exodeoxyribonuclease III [Aciduliprofundum boonei T469]
Length = 255
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 92/284 (32%), Positives = 146/284 (51%), Gaps = 40/284 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPP-----FKNYQIWW 96
L ++WN N + V+N F +F+ + PD++ALQ + + P + +Y +W
Sbjct: 3 LLLISWNVNGIRACVRNG---FLDFLEKYKPDILALQEIKATEDNIPIEVRYYPDYHKYW 59
Query: 97 SLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNG 155
+ A K YAGTAL K +P + F + + K++ +GRVI AE+E FYL+N Y PN+
Sbjct: 60 NPAKKKGYAGTALFTK--IEPLNIKFGIGED--KFDSEGRVITAEYEKFYLVNAYFPNS- 114
Query: 156 WKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY 214
+ + ++DK I ++ + KP+I CGD NV+H+EID+++P
Sbjct: 115 -QHGLTRLDFKIEFDKLIHSYLNELRKKKPVILCGDFNVAHKEIDLANP----------- 162
Query: 215 VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGK 274
K++ GFT ER L++G ID +R KE W+ + R
Sbjct: 163 ----KQNVKNAGFTPQERAWMDEFLQDG-YIDTFRMFTKEGGHYTW--WTYRFKARERNI 215
Query: 275 RMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
R+DYF+VSEELKD++ + + L YGSDH P+++ L
Sbjct: 216 GWRVDYFVVSEELKDKVKSSWI------LSEVYGSDHAPIAMVL 253
>gi|223278420|ref|NP_001138591.1| DNA-(apurinic or apyrimidinic site) lyase [Canis lupus familiaris]
Length = 318
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 98/320 (30%), Positives = 162/320 (50%), Gaps = 45/320 (14%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
EKE + + PAL D +T + K LK +WN + L +K + +++
Sbjct: 34 EKEAAGEGPALYEDPPDQKTAPSG-----KSATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQ-------ILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVS 120
PD++ LQ L L P +Q W + +D + Y+G LL ++C P KVS
Sbjct: 86 EEAPDILCLQETKCSENKLPAELQELPGLPHQYWSAPSDKEGYSGVGLLSRQC--PLKVS 143
Query: 121 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ- 179
+ + + +++ +GRVI+AEF+TF L+ Y PN G + R++WD+ ++F+
Sbjct: 144 YGIGEE--EHDQEGRVIVAEFDTFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGL 199
Query: 180 CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 239
S KPL+ CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L
Sbjct: 200 ASRKPLVLCGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELL 244
Query: 240 KEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGH 299
+ L D++R L+ F W+ + + R+DYF++S L + +++
Sbjct: 245 QAVPLADSFRHLYPNTAYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSK 303
Query: 300 GIELEGFYGSDHCPVSLELS 319
+ GSDHCP++L L+
Sbjct: 304 AL------GSDHCPITLYLA 317
>gi|373497233|ref|ZP_09587764.1| exodeoxyribonuclease III (xth) [Fusobacterium sp. 12_1B]
gi|404366853|ref|ZP_10972230.1| exodeoxyribonuclease III (xth) [Fusobacterium ulcerans ATCC 49185]
gi|313690462|gb|EFS27297.1| exodeoxyribonuclease III (xth) [Fusobacterium ulcerans ATCC 49185]
gi|371963724|gb|EHO81271.1| exodeoxyribonuclease III (xth) [Fusobacterium sp. 12_1B]
Length = 253
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 89/282 (31%), Positives = 143/282 (50%), Gaps = 38/282 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L V+ F ++ + D+ +Q L + Y +W+ A
Sbjct: 1 MKLISWNVNGLRAAVQKG---FLDYFKNENADIFCVQETKLQEGQIELELEGYHQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ KK +P +VS+ L +++ +GRVI E++ FY++ Y PN+ +E
Sbjct: 58 EKKGYSGTAIFTKK--KPIEVSYGL--GIEEHDKEGRVITLEYDDFYMITVYTPNS--QE 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R W+ + +V++ KP+I CGDLNV+H+EID+ +P
Sbjct: 112 ELARLSYRMSWEDEFRNYVMKLDKLKPVIICGDLNVAHQEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
K + GF+ ER +F +LK G +D++R + E + +S WS +
Sbjct: 158 -KSNRKNAGFSDEERAKFTELLKNG-FVDSFRHFYPE--LTGAYSWWSYRFNARKNNAGW 213
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF+VSE LKD + E+ + GSDHCPV L+L
Sbjct: 214 RIDYFVVSERLKDIMEGAEIHNETL------GSDHCPVVLKL 249
>gi|374997767|ref|YP_004973266.1| exodeoxyribonuclease III [Desulfosporosinus orientis DSM 765]
gi|357216133|gb|AET70751.1| exodeoxyribonuclease III [Desulfosporosinus orientis DSM 765]
Length = 250
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 94/281 (33%), Positives = 140/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPFK--NYQIWWSLA 99
+K ++WN N L VKN F +F T + DV +Q PF+ Y +W+ A
Sbjct: 1 MKLISWNVNGLRACVKNG---FLDFFTKENADVFCIQETKIQEEQIPFQLDGYYSYWNFA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ K +P VS+ + +++ +GRVI E+E F+L+ Y PN+ +
Sbjct: 58 QKKGYSGTAIFSKT--EPINVSYGIGME--EHDQEGRVITLEYEPFFLVTVYTPNS--QR 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R KW+ ++ KP+I+CGDLNV+H+EID+ +P+
Sbjct: 112 GLARLDYRMKWEDDFLAYLKTLEKSKPIIFCGDLNVAHQEIDLKNPK------------T 159
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
NK++ GFT ER +F +L G ID++RF + E+ D WS + R
Sbjct: 160 NKKN---AGFTSEERDKFSQVLNHG-FIDSFRFFYPEQ-RDAYTWWSYMFNARANNAGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF VS LKD++ + YGSDHCPV LE+
Sbjct: 215 IDYFCVSAGLKDQLKNVSI------YSDVYGSDHCPVGLEV 249
>gi|223935760|ref|ZP_03627676.1| exodeoxyribonuclease III Xth [bacterium Ellin514]
gi|223895768|gb|EEF62213.1| exodeoxyribonuclease III Xth [bacterium Ellin514]
Length = 250
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 95/289 (32%), Positives = 145/289 (50%), Gaps = 50/289 (17%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPFKNYQIW------ 95
+K ++WN N L +K N F +F+ DPD++ LQ P Q+W
Sbjct: 1 MKLISWNVNGLRAVLKKN---FLDFLAKEDPDILCLQ----ETKCTPDDVEQLWPATFTT 53
Query: 96 -WSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPN 153
W+ A K Y+GTA+ K K +S SL +++ +GRV+ +E+ F+L+N Y PN
Sbjct: 54 YWNTAQKKGYSGTAIFTKA----KPISVSLGINCPEHDMEGRVLTSEYPEFFLVNVYVPN 109
Query: 154 NGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLN 212
+ K E R++WD ++ + K P+I+CGDLNV+H EID+++P
Sbjct: 110 S--KRELTRLAYRQQWDCDFLSYLKKLEKKKPVIFCGDLNVAHTEIDLANP--------- 158
Query: 213 GYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYR 272
K + GFT ER F ++K G ID +R K +SW +P+G R
Sbjct: 159 ------KANVKNHGFTPEERAGFSTVIKAG-FIDTFREFEKGGGH---YSW-WSPMGGAR 207
Query: 273 GKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
+ + RIDYF++S L+ R+ +Q + GSDHCPV +ELS
Sbjct: 208 SRNVGWRIDYFLISSALRPRLKRAFIQPN------IPGSDHCPVGIELS 250
>gi|383810829|ref|ZP_09966315.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 306 str. F0472]
gi|383356543|gb|EID34041.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 306 str. F0472]
Length = 249
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 88/282 (31%), Positives = 144/282 (51%), Gaps = 39/282 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+KF++WN N L V +F F+ D LQ + F Y+ +W+ A
Sbjct: 1 MKFISWNVNGLRACVG---KDFEQQFKDFNADFFCLQETKMQAGQLDLSFPGYESYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
D K Y+GTA+ K +P V++ + +++ +GRVI E + FYL+ Y PN+ ++
Sbjct: 58 DKKGYSGTAIFTKH--KPLSVTYGINID--EHDHEGRVITLEMDDFYLVTVYTPNS--QD 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E + R KW++ Q ++ + KP+I CGD+NV+H+EID+ +P
Sbjct: 112 ELRRLEYRMKWEEDFQSYLHKLDETKPVIVCGDMNVAHQEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
K + GFT ER++ +L G ID +R L+ E+ +S WS + +
Sbjct: 158 -KTNRRNAGFTDEEREKMTELLNNG-FIDTFRTLYPEQ---VTYSWWSYRFRAREKNTGW 212
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF++SE L+DR+I ++ + GSDHCP+ ++L
Sbjct: 213 RIDYFLISERLRDRLIDAKIHTETM------GSDHCPIEIDL 248
>gi|422422487|ref|ZP_16499440.1| exodeoxyribonuclease III [Listeria seeligeri FSL S4-171]
gi|313637385|gb|EFS02862.1| exodeoxyribonuclease III [Listeria seeligeri FSL S4-171]
Length = 251
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 93/286 (32%), Positives = 149/286 (52%), Gaps = 44/286 (15%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ-ILMRA----LSSPPFKNYQIWW 96
+K ++WN N L VK + E+ + + D D+ LQ ++A L P +K+Y W
Sbjct: 1 MKLISWNVNGLRAAVKKGFLEYFD---SVDADIFCLQETKLQAGQIDLDLPAYKDY---W 54
Query: 97 SLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNG 155
+ A K Y+GTA+ K +P V + L +++ +GRVI EF+ F+++ Y PN+
Sbjct: 55 NYAVKKGYSGTAIFTKT--EPLSVQYGL--GIPEHDDEGRVITLEFDKFFMVTVYTPNS- 109
Query: 156 WKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY 214
+ E R ++ I +V + KP++ CGDLNV+HEEID+ +P
Sbjct: 110 -QAELKRLDYRMTFEDAILAYVKKLDETKPVVLCGDLNVAHEEIDLKNP----------- 157
Query: 215 VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRG 273
K + GF+ ER +F A L+ G +D++R+ + D++ +S WS + R
Sbjct: 158 ----KTNRKNAGFSDEERAKFTAFLEAG-FVDSFRYFY--PDLEDAYSWWSYRMNARARN 210
Query: 274 KRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
RIDYF+VSE LKD ++ ++ + GSDHCPV LEL+
Sbjct: 211 TGWRIDYFVVSERLKDNLVDAKIHPDVL------GSDHCPVELELN 250
>gi|426376144|ref|XP_004054867.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Gorilla
gorilla gorilla]
gi|426376146|ref|XP_004054868.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Gorilla
gorilla gorilla]
gi|426376148|ref|XP_004054869.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Gorilla
gorilla gorilla]
gi|426376150|ref|XP_004054870.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Gorilla
gorilla gorilla]
Length = 318
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 97/320 (30%), Positives = 164/320 (51%), Gaps = 45/320 (14%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 DKEAAGEGPALYEDPPDQKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQ-------ILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVS 120
PD++ LQ L L P +YQ W + +D + Y+G LL ++C P KVS
Sbjct: 86 EEAPDILCLQETKCSENKLPAELQELPGLSYQYWSAPSDKEGYSGVGLLSRQC--PLKVS 143
Query: 121 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ- 179
+ + + +++ +GRVI+AEF++F L+ Y PN G + R++WD+ ++F+
Sbjct: 144 YGIGEE--EHDQEGRVIVAEFDSFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGL 199
Query: 180 CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 239
S KPL+ CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L
Sbjct: 200 ASRKPLVLCGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELL 244
Query: 240 KEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGH 299
+ L D++R L+ F W+ + + R+DYF++S L + +++
Sbjct: 245 QAVPLADSFRHLYPNTPYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSK 303
Query: 300 GIELEGFYGSDHCPVSLELS 319
+ GSDHCP++L L+
Sbjct: 304 AL------GSDHCPITLYLA 317
>gi|229162671|ref|ZP_04290628.1| Exodeoxyribonuclease [Bacillus cereus R309803]
gi|228620553|gb|EEK77422.1| Exodeoxyribonuclease [Bacillus cereus R309803]
Length = 252
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 90/284 (31%), Positives = 146/284 (51%), Gaps = 39/284 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F ++ + D+ LQ L + Y +W+ A
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKLQDGQIDLNLEGYYTYWNYA 58
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ KK +P V++ L +++ +GRVI EFE F+++ Y PN+ K
Sbjct: 59 VKKGYSGTAIFSKK--EPLSVTYGL--GIEEHDQEGRVITLEFEDFHMITLYTPNS--KR 112
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R KW+ + ++ + KP+I+CGDLNV+H+EID+ +P
Sbjct: 113 GLERLDYRMKWEDDFRAYIKRLDEKKPVIFCGDLNVAHKEIDLKNP-------------- 158
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
K + PGF+ ER++F +L+EG ID YR+L+ D +SW +G R K +
Sbjct: 159 -KSNRKNPGFSDEEREKFTCVLEEG-FIDTYRYLY--PDQKGAYSWWSYRMGA-RAKNIG 213
Query: 277 -RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
R+DYF+VSE +K++I ++ + GSDHCPV L ++
Sbjct: 214 WRLDYFVVSERMKNQITEAKINSEVM------GSDHCPVELHVN 251
>gi|402875487|ref|XP_003901536.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Papio anubis]
gi|402875489|ref|XP_003901537.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Papio anubis]
Length = 318
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 97/320 (30%), Positives = 164/320 (51%), Gaps = 45/320 (14%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 DKEAAGEGPALYEDPPDQKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQ-------ILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVS 120
PD++ LQ L L P ++Q W + +D + Y+G LL + C P KVS
Sbjct: 86 EEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRHC--PLKVS 143
Query: 121 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ- 179
+ + + +++ +GRVI+AEF++F L+ TY PN G + R++WD+ ++F+
Sbjct: 144 YGIGEE--EHDQEGRVIVAEFDSFVLVTTYVPNAG--RGLVRLEYRQRWDEAFRKFLKGL 199
Query: 180 CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 239
S KPL+ CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L
Sbjct: 200 ASRKPLVLCGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELL 244
Query: 240 KEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGH 299
+ L D++R L+ F W+ + + R+DYF++S L + +++
Sbjct: 245 QAVPLADSFRHLYPNTPYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSK 303
Query: 300 GIELEGFYGSDHCPVSLELS 319
+ GSDHCP++L L+
Sbjct: 304 AL------GSDHCPITLYLA 317
>gi|376263099|ref|YP_005149819.1| exodeoxyribonuclease III [Clostridium sp. BNL1100]
gi|373947093|gb|AEY68014.1| exodeoxyribonuclease III [Clostridium sp. BNL1100]
Length = 253
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 96/282 (34%), Positives = 144/282 (51%), Gaps = 40/282 (14%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLAD 100
K V+WN N L + F +F D D+ +Q L + Y+ +W+ A
Sbjct: 3 KLVSWNVNGLRACIGKG---FWDFFKEVDADIFCVQETKLQEGQIELELEGYEHYWNYAV 59
Query: 101 SK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEE 159
K Y+GTA+ K K VS S +++ +GRVI EFE ++L+N Y PN+ K E
Sbjct: 60 KKGYSGTAIFTK----IKPVSSSCGIGIEEHDNEGRVITLEFEEYFLVNVYTPNS--KRE 113
Query: 160 ENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPN 218
+ R KW+ + ++ Q KP+I CGD+NV+H+EID+ +P N
Sbjct: 114 LERLEYRMKWEDDFRVYLKQLEQTKPVIICGDMNVAHQEIDIKNPR------------SN 161
Query: 219 KEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM-- 276
K GFT+ ER++F +L++G +D +R L+ +K ++W + + K R K +
Sbjct: 162 KR---SAGFTMEEREKFSELLEQG-FVDTFRTLYPDKTG--AYTW-WSYMFKAREKNVGW 214
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF +SE LKDRI A E+ GSDHCPV L +
Sbjct: 215 RIDYFCISEALKDRIEAAEIYCD------IMGSDHCPVGLTI 250
>gi|56963720|ref|YP_175451.1| exodeoxyribonuclease III [Bacillus clausii KSM-K16]
gi|56909963|dbj|BAD64490.1| exodeoxyribonuclease III [Bacillus clausii KSM-K16]
Length = 260
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 93/290 (32%), Positives = 144/290 (49%), Gaps = 36/290 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+KFV+WN N L VK F +F D DV LQ L + S Y+ +W+ A
Sbjct: 1 MKFVSWNVNGLRACVKKG---FLDFFQQVDADVFCLQETKLQKGQISLELPGYEQYWNDA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K P V++ + E +GRVI EFET+Y++ Y PN K
Sbjct: 58 ERKGYSGTAIFTKH--SPLSVTYGIGDHFP--ENEGRVITLEFETYYVVTMYTPNA--KR 111
Query: 159 EENSFQRRRKWDKRIQEFV-LQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ + R +W+K +E++ L + KP+++CGDLNV+H+ IDV +
Sbjct: 112 DLSRLPYRLQWEKAAREYLTLLATQKPVVFCGDLNVAHQPIDVRN--------------- 156
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
++ + G GFT ER FG +L+ G +D +R + + D D WS + R R
Sbjct: 157 DRANVGNSGFTDEERAEFGKLLEAG-FVDTFRHFYPD-DEDAFTWWSYMANVRARNIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEASSDSEK 327
IDYF++S L ++ + + GSDHCP+ L L ++S +
Sbjct: 215 IDYFLISRALMPYLVDASIHSSVL------GSDHCPIELCLDLQPNESSR 258
>gi|377832034|ref|ZP_09814998.1| exodeoxyribonuclease III Xth [Lactobacillus mucosae LM1]
gi|377554041|gb|EHT15756.1| exodeoxyribonuclease III Xth [Lactobacillus mucosae LM1]
Length = 252
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 87/280 (31%), Positives = 138/280 (49%), Gaps = 36/280 (12%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLAD 100
KF++WN N L +K+ F D D +Q L +Y +W+ A+
Sbjct: 3 KFISWNVNGLRAAIKHG---FLQVFNEMDADFFCIQETKLAPGQLDLDLPDYHQYWNYAE 59
Query: 101 SK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEE 159
K Y+GTA+ K+ P V + + +E GRVI E+ FYL+NTY PN+G + +
Sbjct: 60 KKGYSGTAIFAKQ--PPLSVQYGINVPEFDHE--GRVITLEYPDFYLINTYVPNSGAELK 115
Query: 160 ENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPN 218
F R +++ E+V Q S K ++WCGDLNV+H+EID+ +P+
Sbjct: 116 RLDF--RHGFNEAFYEYVNQLSQQKSIVWCGDLNVAHQEIDLKNPQ-------------- 159
Query: 219 KEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRI 278
+ PGFT ER F +LK G D +R+ + +++ + WS + R RI
Sbjct: 160 -SNHHHPGFTDEERFDFSKLLKSG-FTDTFRYFYPDQEHSYSW-WSYRFHARQRNAGWRI 216
Query: 279 DYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
DYF+ S +L +++ ++ + GSDHCPV L++
Sbjct: 217 DYFVASADLDSQLVDAKIH------DQILGSDHCPVELDI 250
>gi|384475785|ref|NP_001245038.1| DNA-(apurinic or apyrimidinic site) lyase [Macaca mulatta]
gi|90078218|dbj|BAE88789.1| unnamed protein product [Macaca fascicularis]
gi|355693074|gb|EHH27677.1| hypothetical protein EGK_17940 [Macaca mulatta]
gi|355767431|gb|EHH62612.1| hypothetical protein EGM_21005 [Macaca fascicularis]
gi|383417983|gb|AFH32205.1| DNA-(apurinic or apyrimidinic site) lyase [Macaca mulatta]
gi|384946780|gb|AFI36995.1| DNA-(apurinic or apyrimidinic site) lyase [Macaca mulatta]
gi|384946782|gb|AFI36996.1| DNA-(apurinic or apyrimidinic site) lyase [Macaca mulatta]
gi|384946784|gb|AFI36997.1| DNA-(apurinic or apyrimidinic site) lyase [Macaca mulatta]
Length = 318
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 97/320 (30%), Positives = 164/320 (51%), Gaps = 45/320 (14%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 DKEAAGEGPALYEDPPDQKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQ-------ILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVS 120
PD++ LQ L L P ++Q W + +D + Y+G LL + C P KVS
Sbjct: 86 EEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRHC--PLKVS 143
Query: 121 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ- 179
+ + + +++ +GRVI+AEF++F L+ TY PN G + R++WD+ ++F+
Sbjct: 144 YGIGEE--EHDQEGRVIVAEFDSFVLVTTYVPNAG--RGLVRLEYRQRWDEAFRKFLKGL 199
Query: 180 CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 239
S KPL+ CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L
Sbjct: 200 ASRKPLVLCGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELL 244
Query: 240 KEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGH 299
+ L D++R L+ F W+ + + R+DYF++S L + +++
Sbjct: 245 QAVPLADSFRHLYPNTPYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSK 303
Query: 300 GIELEGFYGSDHCPVSLELS 319
+ GSDHCP++L L+
Sbjct: 304 AL------GSDHCPITLYLA 317
>gi|373858337|ref|ZP_09601074.1| exodeoxyribonuclease III Xth [Bacillus sp. 1NLA3E]
gi|372451804|gb|EHP25278.1| exodeoxyribonuclease III Xth [Bacillus sp. 1NLA3E]
Length = 252
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 92/281 (32%), Positives = 141/281 (50%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K V+WN N + V F ++ D DV +Q L S K++ +W+ A
Sbjct: 1 MKLVSWNVNGIRACVGKG---FLDYFYQIDADVFCIQETKLQEGQISLELKDHSQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ KK +P V + + T +++ +GR I EFE FYL+N Y PN+ +
Sbjct: 58 VKKGYSGTAIFSKK--KPLSVQYGIGTT--EHDSEGRAITLEFEEFYLVNIYTPNS--QR 111
Query: 159 EENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++EF+ + + KP+I CGD+NV+H EID+ +P
Sbjct: 112 DLARLNYRVAWEDYLREFLQELDTKKPVILCGDMNVAHHEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GFT ER + +L G +D +R L+ EK+ + WS + R R
Sbjct: 158 -KSNMKNSGFTPEERGKMTELLNNG-FVDTFRHLNPEKE-NVYTWWSYMNKVRERNIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+VSE L++ II ++ GSDHCPV LE+
Sbjct: 215 IDYFLVSERLRESIIDTQVHS------DIMGSDHCPVLLEI 249
>gi|423611960|ref|ZP_17587821.1| exodeoxyribonuclease III (xth) [Bacillus cereus VD107]
gi|401246967|gb|EJR53311.1| exodeoxyribonuclease III (xth) [Bacillus cereus VD107]
Length = 252
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 89/284 (31%), Positives = 145/284 (51%), Gaps = 39/284 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPF--KNYQIWWSLA 99
+KF++WN N L + F ++ + D+ LQ + + Y +W+ A
Sbjct: 1 MKFISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKLQSGQIDLNPEGYYTYWNYA 58
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ KK +P V + L +++ +GRVI EF+ FY++ Y PN+ K
Sbjct: 59 VKKGYSGTAIFTKK--EPISVMYGL--GIEEHDQEGRVITLEFDDFYMITLYTPNS--KR 112
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R +W+ + ++ + KP+I+CGDLNV+H+EID+ +P
Sbjct: 113 GLERLDYRMEWEDDFRAYIKRLDEKKPVIFCGDLNVAHKEIDLKNP-------------- 158
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
K + PGF+ ER++F +L+EG ID YR+L+ E+ + +SW +G R K +
Sbjct: 159 -KSNRKNPGFSDEEREKFTCVLEEG-FIDTYRYLYPEQ--EGAYSWWSYRMGA-RAKNIG 213
Query: 277 -RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
R+DYF++SE LK +I ++ GSDHCPV L +
Sbjct: 214 WRLDYFVISERLKHKITDAKINSE------VTGSDHCPVELRMG 251
>gi|302334904|ref|YP_003800111.1| exodeoxyribonuclease III Xth [Olsenella uli DSM 7084]
gi|301318744|gb|ADK67231.1| exodeoxyribonuclease III Xth [Olsenella uli DSM 7084]
Length = 263
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 96/282 (34%), Positives = 141/282 (50%), Gaps = 36/282 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
LK V+WN N L ++ + P F + D DV A+Q L Y W+ A
Sbjct: 11 LKLVSWNVNGLRAVMRKD-PSFLQIFSQLDADVFAIQETKLQEGQVELDLPGYFQTWNFA 69
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ ++ P +V + E GRV EF TF+ ++ Y PN+ K+
Sbjct: 70 ERKGYSGTAVFSRE--DPLRVIRQIGSDVADDE--GRVCALEFPTFWFVDVYTPNS--KQ 123
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R WD+R + F+L+ KP++ CGD NV+H+EID+ +P
Sbjct: 124 GLARIEERMGWDERFRLFLLELDAHKPIVTCGDFNVAHQEIDLRNPS------------T 171
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
N E+ PGF+ AER FG +L G D +R L+ D++ +S WS + R
Sbjct: 172 NHEN---PGFSDAERDSFGRLLDAG-FTDTFRSLN--PDLEGAYSWWSYRMRARERNVGW 225
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF+ SE + DRI +G I E F GSDHCP+ L++
Sbjct: 226 RIDYFLTSERVADRI-----EGASIHDEVF-GSDHCPIELQI 261
>gi|20808602|ref|NP_623773.1| exonuclease III [Thermoanaerobacter tengcongensis MB4]
gi|20517232|gb|AAM25377.1| Exonuclease III [Thermoanaerobacter tengcongensis MB4]
Length = 258
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 89/286 (31%), Positives = 145/286 (50%), Gaps = 39/286 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQIL-----MRALSSPPFKNYQIWW 96
+K V+WN N L ++ F ++ D D+ +Q + + Y +W
Sbjct: 1 MKLVSWNVNGLRACLQKG---FMDYFKAIDADIFCIQETKLQENQKDIEGLDLNGYYAFW 57
Query: 97 SLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNG 155
+ A+ K Y+GTA+ K ++P VS+ + ++ +GRVI E++ F+L+N Y PN+
Sbjct: 58 NFAEKKGYSGTAVFTK--YKPLSVSYGIGTP--HHDKEGRVITLEYKKFFLVNAYTPNS- 112
Query: 156 WKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY 214
+ R +W++ + ++L+ S KP+I CGDLNV+H+EID+ +P AA + N
Sbjct: 113 -QRGLTRLNYRMEWEEDFRSYLLKLDSVKPVILCGDLNVAHQEIDIKNP---AANRRNA- 167
Query: 215 VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGK 274
GFT ER++ +L G ID +R+ + +K D WS + +
Sbjct: 168 -----------GFTDEEREKMTILLNSG-FIDTFRYFYPDKK-DAYTWWSYMHNAREKNI 214
Query: 275 RMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 320
R+DYFIVSE LKD +I ++ + GSDHCPV L + E
Sbjct: 215 GWRVDYFIVSERLKDYLIDSQIHSEVM------GSDHCPVVLIVKE 254
>gi|332263793|ref|XP_003280936.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Nomascus
leucogenys]
gi|332263795|ref|XP_003280937.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Nomascus
leucogenys]
gi|332263797|ref|XP_003280938.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Nomascus
leucogenys]
gi|332263799|ref|XP_003280939.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Nomascus
leucogenys]
gi|441667374|ref|XP_004091971.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Nomascus
leucogenys]
Length = 318
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 96/320 (30%), Positives = 165/320 (51%), Gaps = 45/320 (14%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 DKEAAGEGPALYEDPPDQKTSPSG-----KTATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQ-------ILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVS 120
PD++ LQ L L P ++Q W + +D + Y+G LL ++C P KVS
Sbjct: 86 EEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVS 143
Query: 121 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ- 179
+ + + +++ +GRVI+AEF++F L+ Y PN G + R++WD+ +++F+
Sbjct: 144 YGIGEE--EHDQEGRVIVAEFDSFVLVTAYVPNAG--RGLVRLEYRQRWDEALRKFLKGL 199
Query: 180 CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 239
S KPL+ CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L
Sbjct: 200 ASRKPLVLCGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELL 244
Query: 240 KEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGH 299
+ L D++R L+ F W+ + + R+DYF++S L + +++
Sbjct: 245 QAVPLADSFRHLYPNTPYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSK 303
Query: 300 GIELEGFYGSDHCPVSLELS 319
+ GSDHCP++L L+
Sbjct: 304 AL------GSDHCPITLYLA 317
>gi|308233639|ref|ZP_07664376.1| exodeoxyribonuclease III Xth [Atopobium vaginae DSM 15829]
gi|328944401|ref|ZP_08241863.1| exodeoxyribonuclease III [Atopobium vaginae DSM 15829]
gi|327490985|gb|EGF22762.1| exodeoxyribonuclease III [Atopobium vaginae DSM 15829]
Length = 259
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 94/287 (32%), Positives = 138/287 (48%), Gaps = 36/287 (12%)
Query: 37 SKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQI 94
S+K P +FV+WN N L +K P F +T + D+ A+Q L Y
Sbjct: 2 SQKHPYRFVSWNVNGLRATLKKE-PSFLEIFSTLNADIFAIQETKLQAGQVDLDLDGYTQ 60
Query: 95 WWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPN 153
WS A+ K Y+GTA+ ++ +P ++ A E GRV EFE F+ ++ Y PN
Sbjct: 61 TWSYAERKGYSGTAVFSRE--KPLSTIHTIGCKAADNE--GRVCALEFEKFWFVDVYTPN 116
Query: 154 NGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLN 212
+ K E R +WDK +EF++ KP+I CGD NV+H+EID+ +P
Sbjct: 117 S--KNELARLDERMEWDKAYREFLVGLDAQKPVITCGDFNVAHQEIDLKNP--------- 165
Query: 213 GYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKY 271
N E+ GF+ ER F ++L G D +R H ++ +S WS +
Sbjct: 166 ---ASNHEN---AGFSDEERAGFSSLLGAG-FTDTFRSAHPT--LEGAYSWWSYRMRSRE 216
Query: 272 RGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
R RIDYF+VS + + + + + YGSDHCPV LEL
Sbjct: 217 RNAGWRIDYFLVSNRIANTVTSSAIYNE------IYGSDHCPVGLEL 257
>gi|295704797|ref|YP_003597872.1| exodeoxyribonuclease III [Bacillus megaterium DSM 319]
gi|294802456|gb|ADF39522.1| exodeoxyribonuclease III [Bacillus megaterium DSM 319]
Length = 253
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 93/284 (32%), Positives = 148/284 (52%), Gaps = 41/284 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N + V+ F ++ DV +Q L + Y +W+ A
Sbjct: 1 MKLISWNVNGIRACVRKG---FLDYFQEVTADVFCIQETKLQEGQIDLQLEGYYQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ K+ +P VSF ++K + E +GR+I EFE Y++N Y PN+ K
Sbjct: 58 VKKGYSGTAVFTKQ--KPLSVSFGVDK---ELEDEGRIITLEFEQCYVVNVYTPNS--KR 110
Query: 159 EENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ + R +W+ + ++ + S K +I CGDLNV+H EID+ +P+ P
Sbjct: 111 DLARLEERLQWEDDLLVYLKKLNSRKAVILCGDLNVAHAEIDLRNPK------------P 158
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
N+ G GFTI ER + +L G +D +R+L+ + + ++W + + K R + +
Sbjct: 159 NR---GNSGFTIEERGKMTTLLASG-FLDTFRYLYPNQ--EGAYTW-WSYMNKVRERNIG 211
Query: 277 -RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
RIDYFIVSE +KD I + H + GSDHCPV LEL+
Sbjct: 212 WRIDYFIVSERIKDVIQEAAIHPHVM------GSDHCPVMLELN 249
>gi|422419400|ref|ZP_16496355.1| exodeoxyribonuclease III, partial [Listeria seeligeri FSL N1-067]
gi|313632791|gb|EFR99747.1| exodeoxyribonuclease III [Listeria seeligeri FSL N1-067]
Length = 251
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 94/286 (32%), Positives = 148/286 (51%), Gaps = 44/286 (15%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ-ILMRA----LSSPPFKNYQIWW 96
+K ++WN N L VK + E+ + + D D+ LQ ++A L P +K+Y W
Sbjct: 1 MKLISWNVNGLRAAVKKGFLEYFD---SVDADIFCLQETKLQAGQIDLDLPAYKDY---W 54
Query: 97 SLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNG 155
+ A K Y+GT KK +P V + L +++ +GRVI EFE F+++ Y PN+
Sbjct: 55 NYAVKKGYSGTXXFTKK--EPLSVQYGL--GIEEHDTEGRVITLEFEKFFMVTVYTPNS- 109
Query: 156 WKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY 214
+ E R ++ I +V + KP++ CGDLNV+HEEID+ +P
Sbjct: 110 -QAELKRLDYRMTFEDAILAYVKKLDETKPVVLCGDLNVAHEEIDLKNP----------- 157
Query: 215 VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRG 273
K + GF+ ER +F A L+ G +D++R+ + D++ +S WS + R
Sbjct: 158 ----KTNRKNAGFSDEERAKFTAFLEAG-FVDSFRYFY--PDLEDAYSWWSYRMNARARN 210
Query: 274 KRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
RIDYF+VSE LKD ++ ++ + GSDHCPV LEL+
Sbjct: 211 IGWRIDYFVVSERLKDNLVDAKIHPDVL------GSDHCPVELELN 250
>gi|380796163|gb|AFE69957.1| DNA-(apurinic or apyrimidinic site) lyase, partial [Macaca mulatta]
Length = 297
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 97/320 (30%), Positives = 164/320 (51%), Gaps = 45/320 (14%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 13 DKEAAGEGPALYEDPPDQKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 64
Query: 69 TFDPDVIALQ-------ILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVS 120
PD++ LQ L L P ++Q W + +D + Y+G LL + C P KVS
Sbjct: 65 EEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRHC--PLKVS 122
Query: 121 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ- 179
+ + + +++ +GRVI+AEF++F L+ TY PN G + R++WD+ ++F+
Sbjct: 123 YGIGEE--EHDQEGRVIVAEFDSFVLVTTYVPNAG--RGLVRLEYRQRWDEAFRKFLKGL 178
Query: 180 CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 239
S KPL+ CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L
Sbjct: 179 ASRKPLVLCGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELL 223
Query: 240 KEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGH 299
+ L D++R L+ F W+ + + R+DYF++S L + +++
Sbjct: 224 QAVPLADSFRHLYPNTPYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSK 282
Query: 300 GIELEGFYGSDHCPVSLELS 319
+ GSDHCP++L L+
Sbjct: 283 AL------GSDHCPITLYLA 296
>gi|347549181|ref|YP_004855509.1| putative 3'-exo-deoxyribonuclease exoA [Listeria ivanovii subsp.
ivanovii PAM 55]
gi|346982252|emb|CBW86246.1| Putative 3'-exo-deoxyribonuclease exoA [Listeria ivanovii subsp.
ivanovii PAM 55]
Length = 251
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 92/286 (32%), Positives = 148/286 (51%), Gaps = 44/286 (15%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ-ILMRA----LSSPPFKNYQIWW 96
+K ++WN N L VK + E+ + D D+ LQ ++A L P +K+Y W
Sbjct: 1 MKLISWNVNGLRAAVKKGFLEY---FESVDADIFCLQETKLQAGQIDLDLPEYKDY---W 54
Query: 97 SLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNG 155
+ A K Y+GTA+ K +P V + L+ +++ +GRVI EFE F+++ Y PN+
Sbjct: 55 NYAVKKGYSGTAIFTK--IEPISVRYGLDIP--EHDTEGRVITLEFEKFFMITVYTPNS- 109
Query: 156 WKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY 214
+ E R ++ I +V + KP++ CGDLNV+HEEID+ +P
Sbjct: 110 -QAELKRLDYRMTFEDAILTYVKKLDETKPVVLCGDLNVAHEEIDLKNP----------- 157
Query: 215 VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRG 273
K + GF+ ER +F L+ G +D++R+ + D++ +S WS + +
Sbjct: 158 ----KTNRKNAGFSDEERAKFTTFLEAG-FVDSFRYFY--PDLEGAYSWWSYRMNARAQN 210
Query: 274 KRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
RIDYF+VSE LKD ++ ++ + GSDHCPV LEL+
Sbjct: 211 TGWRIDYFVVSERLKDNLVDAKIHLDVL------GSDHCPVELELN 250
>gi|306820340|ref|ZP_07453979.1| exodeoxyribonuclease III [Eubacterium yurii subsp. margaretiae ATCC
43715]
gi|402309414|ref|ZP_10828407.1| exodeoxyribonuclease III [Eubacterium sp. AS15]
gi|304551669|gb|EFM39621.1| exodeoxyribonuclease III [Eubacterium yurii subsp. margaretiae ATCC
43715]
gi|400372381|gb|EJP25325.1| exodeoxyribonuclease III [Eubacterium sp. AS15]
Length = 251
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 89/282 (31%), Positives = 140/282 (49%), Gaps = 36/282 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+KFV+WN N L + F FD D LQ L Y +W+ A
Sbjct: 1 MKFVSWNVNGLRAAREKG---FDEIFKNFDADFFCLQEIKLQEGQIDMDMDGYYSYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ + +P V + L K +++ +GR+I E+ FY+ Y PN+ K+
Sbjct: 58 KRKGYSGTAIFTR--IEPIDVFYGLGKE--EHDDEGRLITLEYPEFYVSTVYTPNS--KQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R++W+ +EF K P+I CGD+NV+H+EID+ +P
Sbjct: 112 ELLRLDYRQEWEDEFREFFKNLDAKKPVIICGDMNVAHKEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + PGFT ER++F +L G D +R+ + +K+ + + WS + R
Sbjct: 158 -KTNRKNPGFTDEEREKFTLLLDAG-FTDTFRYFYPDKENEYSW-WSYRFNARKNNTGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
IDYF+VS+ L++++ A + + +GSDHCPVS+ELS
Sbjct: 215 IDYFLVSDRLQEKLTAASIH------QDVFGSDHCPVSVELS 250
>gi|392424943|ref|YP_006465937.1| exodeoxyribonuclease III [Desulfosporosinus acidiphilus SJ4]
gi|391354906|gb|AFM40605.1| exodeoxyribonuclease III [Desulfosporosinus acidiphilus SJ4]
Length = 253
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 92/285 (32%), Positives = 147/285 (51%), Gaps = 36/285 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N + F +F T + D+ +Q L + Y +++ A
Sbjct: 1 MKLISWNVNGFRSCLTKG---FLDFFNTVEADIFCIQESKLSAGQIELSLEGYTQYFNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ KK QP SF + ++ +GR+I E++ FYL+N YAPN+ +
Sbjct: 58 ERKGYSGTAVFTKK--QPLTCSFGMGIPL--HDKEGRMITLEYDEFYLINLYAPNS--QA 111
Query: 159 EENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E + R W++ + +V S KP+I+CGDLNV+H+EID+ +P+
Sbjct: 112 ELARLEYRLTWEEDFRRYVQTLNSHKPVIFCGDLNVAHQEIDLKNPQ------------A 159
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
N+ + GFT ER +F +L+ G ID +R+L+ E+ D WS + R R
Sbjct: 160 NRRN---AGFTDEERLKFSELLESG-FIDTFRYLYPEQK-DSYSWWSYRFNARVRNAGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEAS 322
IDYF +SE LKD + + E+ + GSDHCPV +E++ S
Sbjct: 215 IDYFCMSERLKDSLQSAEIYTSVL------GSDHCPVGIEVNSFS 253
>gi|384046695|ref|YP_005494712.1| exodeoxyribonuclease III [Bacillus megaterium WSH-002]
gi|345444386|gb|AEN89403.1| Exodeoxyribonuclease III [Bacillus megaterium WSH-002]
Length = 253
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 92/284 (32%), Positives = 149/284 (52%), Gaps = 41/284 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N + V+ F ++ + DV +Q L + Y +W+ A
Sbjct: 1 MKLISWNVNGIRACVRKG---FLDYFQEVNADVFCIQETKLQEGQIDLQLEGYYQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ K+ +P VS+ ++K + E +GR+I EFE Y++N Y PN+ K
Sbjct: 58 VKKGYSGTAVFTKQ--KPLSVSYGVDKES---EDEGRIITLEFEQCYVVNVYTPNS--KR 110
Query: 159 EENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ + R +W+ + ++ + S K +I CGDLNV+H EID+ +P+ P
Sbjct: 111 DLARLEERLQWEDDLLVYLNKLNSRKAVILCGDLNVAHAEIDLRNPK------------P 158
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
N+ G GFTI ER + +L G +D +R+L+ ++ ++W + + K R + +
Sbjct: 159 NR---GNSGFTIEERGKMTTLLASG-FLDTFRYLYPNQEE--AYTW-WSYMNKVRERNIG 211
Query: 277 -RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
RIDYFIVSE +KD I + H + GSDHCPV LEL+
Sbjct: 212 WRIDYFIVSERIKDVIQEATIHPHVM------GSDHCPVMLELN 249
>gi|423488860|ref|ZP_17465542.1| exodeoxyribonuclease [Bacillus cereus BtB2-4]
gi|423494585|ref|ZP_17471229.1| exodeoxyribonuclease [Bacillus cereus CER057]
gi|423498625|ref|ZP_17475242.1| exodeoxyribonuclease [Bacillus cereus CER074]
gi|401151646|gb|EJQ59092.1| exodeoxyribonuclease [Bacillus cereus CER057]
gi|401159283|gb|EJQ66668.1| exodeoxyribonuclease [Bacillus cereus CER074]
gi|402433215|gb|EJV65269.1| exodeoxyribonuclease [Bacillus cereus BtB2-4]
Length = 252
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 88/284 (30%), Positives = 145/284 (51%), Gaps = 39/284 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPF--KNYQIWWSLA 99
+K ++WN N L + F ++ + D+ LQ + + Y +W+ A
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKLQSGQIDLNPEGYYTYWNYA 58
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ KK +P V++ L +++ +GRVI EFE FY++ Y PN+ K
Sbjct: 59 VKKGYSGTAIFTKK--EPLSVTYGL--GIEEHDQEGRVITLEFEDFYMITLYTPNS--KR 112
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R KW+ + ++ + + K +++CGDLNV+H+EID+ +P
Sbjct: 113 GLERLDYRMKWEDDFRAYIKRLNEKKSVVFCGDLNVAHKEIDLKNP-------------- 158
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
K + PGF+ ER++F L+EG +D YR+L+ D + +SW +G R K +
Sbjct: 159 -KSNRKNPGFSDEEREKFTRTLEEG-FVDTYRYLY--PDQEGAYSWWSYRMGA-RAKNIG 213
Query: 277 -RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
R+DYF+VSE +KD+I ++ GSDHCPV L ++
Sbjct: 214 WRLDYFVVSERMKDKITEAKINSE------IMGSDHCPVELHIN 251
>gi|255523264|ref|ZP_05390235.1| exodeoxyribonuclease III Xth [Clostridium carboxidivorans P7]
gi|296186225|ref|ZP_06854630.1| exodeoxyribonuclease III [Clostridium carboxidivorans P7]
gi|255513132|gb|EET89401.1| exodeoxyribonuclease III Xth [Clostridium carboxidivorans P7]
gi|296049493|gb|EFG88922.1| exodeoxyribonuclease III [Clostridium carboxidivorans P7]
Length = 252
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 88/284 (30%), Positives = 143/284 (50%), Gaps = 36/284 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L V + EF + D+ +Q L + Y +W+ A
Sbjct: 1 MKLISWNVNGLRACVTKGFLEF---FKEVNADIFCIQESKLQEGQIELELEGYHQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ KK K +SF+ +++ +GRVI EF+ FY++ Y PN+ K+
Sbjct: 58 ERKGYSGTAIFTKK----KPLSFTYGIGIEEHDKEGRVITLEFDDFYMVTVYTPNS--KD 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ + R KW+ ++++ KP+I CGDLNV+H+EID+ +P
Sbjct: 112 QLARLEYRMKWENDFRDYLKSLEKNKPVIMCGDLNVAHKEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GFT ER++F L G ID YR+ + +K+ + WS + R
Sbjct: 158 -KTNRKNAGFTDEEREKFTEFLSAG-FIDTYRYFNPDKEGAYSW-WSYRFNARKNNAGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEA 321
IDYF VS+ LK+R+++ ++ + GSDHCPV L +S+
Sbjct: 215 IDYFCVSDCLKERLVSADIHTEVM------GSDHCPVELVISDV 252
>gi|255280445|ref|ZP_05345000.1| exodeoxyribonuclease III [Bryantella formatexigens DSM 14469]
gi|255268910|gb|EET62115.1| exodeoxyribonuclease III [Marvinbryantia formatexigens DSM 14469]
Length = 253
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 90/280 (32%), Positives = 140/280 (50%), Gaps = 36/280 (12%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLAD 100
K ++WN N L V+ F + D D+ +Q L P + Y +W+ A
Sbjct: 4 KMISWNVNGLRACVQKG---FLEYFKEADADIFCIQESKLQEGQIELPLEGYHQYWNYAK 60
Query: 101 SK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEE 159
K Y+GTA+ K+ +P VS+ + +++ +GRVI EF+T+YL+ Y PN+ + E
Sbjct: 61 KKGYSGTAVFSKE--EPLSVSYGI--GIEEHDQEGRVITLEFDTYYLVTVYTPNS--QNE 114
Query: 160 ENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPN 218
R W++ ++ KP+I+CGDLNV+H+EID+ +P
Sbjct: 115 LARLPYRMTWEEAFLAYLKGLEKNKPVIFCGDLNVAHKEIDLKNP--------------- 159
Query: 219 KEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRI 278
K + GFT ER++F IL+ G ID YR+ + E++ + WS + + RI
Sbjct: 160 KTNRKNAGFTDEEREKFSQILENG-FIDTYRYFYPEQEGVYSW-WSYRFRAREKNAGWRI 217
Query: 279 DYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
DYF VSE LKDR++ + GSDHCPV L++
Sbjct: 218 DYFCVSECLKDRLVDARIHTE------ITGSDHCPVELQI 251
>gi|326790354|ref|YP_004308175.1| exodeoxyribonuclease III [Clostridium lentocellum DSM 5427]
gi|326541118|gb|ADZ82977.1| exodeoxyribonuclease III [Clostridium lentocellum DSM 5427]
Length = 251
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 93/283 (32%), Positives = 142/283 (50%), Gaps = 38/283 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K V+WN N + + F ++ D DV +Q Y +W+ A
Sbjct: 1 MKCVSWNVNGVRAVLTKG---FLDYFKAVDADVFCIQETKCQEGQVEIELPGYYQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTAL KK +P VS+ L +++ +GRVI AEFE Y++ Y PN +
Sbjct: 58 QKKGYSGTALFSKK--EPLSVSYGL--GIAEHDTEGRVITAEFEEAYVVTVYTPNA--QN 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R W+ + ++ + KP+I CGDLNV+H+EID+ +P
Sbjct: 112 ELARIDYRMAWEDAFKAYLKKLEENKPVIICGDLNVAHQEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
K + G GF+ ER +FG +L+ G ID +R+ + D++ +S WS + +
Sbjct: 158 -KTNRGNAGFSDEERGKFGELLEAG-FIDTFRYFY--PDLEGAYSWWSYRFKAREKNTGW 213
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
RIDYF+ SE LKD+++ G I+ E GSDHCPV LE++
Sbjct: 214 RIDYFLASEVLKDKLV-----GAAIDAE-ILGSDHCPVILEIN 250
>gi|163941424|ref|YP_001646308.1| exodeoxyribonuclease III Xth [Bacillus weihenstephanensis KBAB4]
gi|229012920|ref|ZP_04170085.1| Exodeoxyribonuclease [Bacillus mycoides DSM 2048]
gi|423661424|ref|ZP_17636593.1| exodeoxyribonuclease [Bacillus cereus VDM022]
gi|163863621|gb|ABY44680.1| exodeoxyribonuclease III Xth [Bacillus weihenstephanensis KBAB4]
gi|228748174|gb|EEL98034.1| Exodeoxyribonuclease [Bacillus mycoides DSM 2048]
gi|401301465|gb|EJS07054.1| exodeoxyribonuclease [Bacillus cereus VDM022]
Length = 252
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 88/284 (30%), Positives = 145/284 (51%), Gaps = 39/284 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPF--KNYQIWWSLA 99
+K ++WN N L + F ++ + D+ LQ + + Y +W+ A
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKLQSGQIDLNPEGYYTYWNYA 58
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ KK +P V++ L +++ +GRVI EFE FY++ Y PN+ K
Sbjct: 59 VKKGYSGTAIFTKK--EPISVTYGL--GIEEHDQEGRVITLEFEDFYMITLYTPNS--KR 112
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R KW+ + ++ + + K +++CGDLNV+H+EID+ +P
Sbjct: 113 GLERLDYRMKWEDDFRAYIKRLNEKKSVVFCGDLNVAHKEIDLKNP-------------- 158
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
K + PGF+ ER++F L+EG +D YR+L+ D + +SW +G R K +
Sbjct: 159 -KSNRKNPGFSDEEREKFTRTLEEG-FVDTYRYLY--PDQEGAYSWWSYRMGA-RAKNIG 213
Query: 277 -RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
R+DYF+VSE +KD+I ++ GSDHCPV L ++
Sbjct: 214 WRLDYFVVSERMKDKITEAKINSE------IMGSDHCPVELHIN 251
>gi|255655350|ref|ZP_05400759.1| putative exodeoxyribonuclease [Clostridium difficile QCD-23m63]
gi|296451338|ref|ZP_06893076.1| exodeoxyribonuclease III [Clostridium difficile NAP08]
gi|296259754|gb|EFH06611.1| exodeoxyribonuclease III [Clostridium difficile NAP08]
Length = 250
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 141/281 (50%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
++F++WN N + F +F D DV LQ L Y +W+ A
Sbjct: 1 MRFISWNVNGIRACAGKG---FLDFFKEVDADVFCLQETKLQEGQIELDLPGYFQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ KK +P KV + + +++ +GRVI EFE FY + Y PN+ +
Sbjct: 58 ERKGYSGTAIFTKK--EPLKVMYGI--NIEEHDKEGRVITLEFEDFYFVTVYTPNS--QS 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E + R +W+ +++ + KP+I CGD+NV+H+EID+ +P
Sbjct: 112 ELKRLEYRTRWEDDFIDYLTKLDNHKPVIVCGDMNVAHKEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GFT ER++F +L G ID YR+ + +K+ + WS + R
Sbjct: 158 -KNNMKNAGFTKEEREKFSKLLDSG-FIDTYRYFNPDKEGVYSW-WSYRFNARKNNAGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF S++L+DR+I+ ++ + GSDHCPV LE+
Sbjct: 215 IDYFCASKKLEDRLISADIHTEVL------GSDHCPVELEI 249
>gi|227509865|ref|ZP_03939914.1| exodeoxyribonuclease III [Lactobacillus brevis subsp. gravesensis
ATCC 27305]
gi|227190789|gb|EEI70856.1| exodeoxyribonuclease III [Lactobacillus brevis subsp. gravesensis
ATCC 27305]
Length = 252
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 91/279 (32%), Positives = 139/279 (49%), Gaps = 36/279 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+KF++WN N L VK +F+ D D +Q + Y+ +++ A
Sbjct: 1 MKFISWNVNGLRAVVKK---DFAETFQKLDADFFCIQETKMQEGQLKLDLPGYRQYFNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K +P VS+ ++ A +++ +GR I E+ FYL+ +Y PN+G K
Sbjct: 58 ERKGYSGTAIFAKD--EPLTVSYGIQ--APEFDHEGRAITLEYPNFYLVTSYVPNSGAKL 113
Query: 159 EENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ F R WDK ++ Q S KP+I CGDLNV+H EID+ +P
Sbjct: 114 KRLDF--RMGWDKAFHAYLNQLDSHKPVILCGDLNVAHHEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GFT ER+ F +L +G +D +R + +K+ D WS + R R
Sbjct: 158 -KSNHHNAGFTDEERQSFTKLLDQG-FMDTFRHFYPDKE-DIYSWWSYRFHSRDRNAGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
IDYF+ S+ L D I ++ L +GSDHCPV L
Sbjct: 215 IDYFVTSKRLADHISDSKI------LTDIFGSDHCPVEL 247
>gi|423483329|ref|ZP_17460019.1| exodeoxyribonuclease III (xth) [Bacillus cereus BAG6X1-2]
gi|401140880|gb|EJQ48435.1| exodeoxyribonuclease III (xth) [Bacillus cereus BAG6X1-2]
Length = 252
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 88/283 (31%), Positives = 146/283 (51%), Gaps = 39/283 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F ++ + D+ LQ L + Y +W+ A
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKLQSGQIDLDLEGYYTYWNYA 58
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ KK +P V++ L +++ +GRVI EF+ FY++ Y PN+ K
Sbjct: 59 LKKGYSGTAIFTKK--EPISVTYGL--GIEEHDQEGRVITLEFDDFYMITLYTPNS--KR 112
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R +W+ + ++ + KP+++CGDLNV+H+EID+ +P
Sbjct: 113 GLERLDYRMEWEDDFRAYIKRLDEKKPVVFCGDLNVAHKEIDLKNP-------------- 158
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
K + PGF+ ER++ +L+EG ID YR+L+ E+ + +SW +G R K +
Sbjct: 159 -KSNRKNPGFSDEEREKITRVLEEG-FIDTYRYLYPEQ--EGAYSWWSYRMGA-RAKNIG 213
Query: 277 -RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
R+DYFI+SE LK +I+ ++ + GSDHCPV L +
Sbjct: 214 WRLDYFIISERLKHKILDAKINSEVM------GSDHCPVELHM 250
>gi|299538266|ref|ZP_07051551.1| exodeoxyribonuclease [Lysinibacillus fusiformis ZC1]
gi|424736313|ref|ZP_18164773.1| exodeoxyribonuclease [Lysinibacillus fusiformis ZB2]
gi|298726468|gb|EFI67058.1| exodeoxyribonuclease [Lysinibacillus fusiformis ZC1]
gi|422949916|gb|EKU44289.1| exodeoxyribonuclease [Lysinibacillus fusiformis ZB2]
Length = 251
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 88/285 (30%), Positives = 145/285 (50%), Gaps = 44/285 (15%)
Query: 42 LKFVTWNANSLLLRVKNNWPEF-----SNFITTFDPDVIALQILMRALSSPPFKNYQIWW 96
+KF++WN N + + + EF ++F + A Q+++ + Y+ +W
Sbjct: 1 MKFISWNVNGIRACLGKGFLEFFHQIDADFFCIQETKCQAGQVVL------SIEGYEQYW 54
Query: 97 SLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNG 155
+ A K Y+GTA+ K P V + + A + +GR+I E++ FYL+N Y PN
Sbjct: 55 NYAQKKGYSGTAIFTKH--TPLSVKYGV--GAEDSQDEGRIITLEYKNFYLVNVYTPNA- 109
Query: 156 WKEEENSFQRRRKWDKRIQEFV--LQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNG 213
+ + R +W+ R+ ++ L C KP+++CGDLNV+H EID+ +
Sbjct: 110 -QRDLARLPLRLQWEDRLANYLQELNCQ-KPVVYCGDLNVAHTEIDLKNA---------- 157
Query: 214 YVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRG 273
K + G GFT ER +F A+L+ G +D++R+ H E + D WS + R
Sbjct: 158 -----KSNIGNSGFTYEERAKFSALLESG-FVDSFRYKHPE-ETDHYTWWSYMNKVRERN 210
Query: 274 KRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF+VS +LK++I + + H GSDHCP+ L+L
Sbjct: 211 IGWRIDYFVVSNQLKEQIESATIHPH------IMGSDHCPIELQL 249
>gi|227522924|ref|ZP_03952973.1| exodeoxyribonuclease III [Lactobacillus hilgardii ATCC 8290]
gi|227089953|gb|EEI25265.1| exodeoxyribonuclease III [Lactobacillus hilgardii ATCC 8290]
Length = 252
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 90/279 (32%), Positives = 139/279 (49%), Gaps = 36/279 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+KF++WN N L VK +F+ D D +Q + Y+ +++ A
Sbjct: 1 MKFISWNVNGLRAVVKK---DFAEIFQKLDADFFCIQETKMQEGQLKLDLPGYRQYFNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K +P VS+ ++ A +++ +GR I E+ FYL+ +Y PN+G K
Sbjct: 58 ERKGYSGTAIFAKD--EPLTVSYGIQ--APEFDHEGRAITLEYPNFYLVTSYVPNSGAKL 113
Query: 159 EENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ F R WDK ++ Q S KP+I CGDLNV+H EID+ +P+
Sbjct: 114 KRLDF--RMGWDKAFHAYLNQLDSHKPVILCGDLNVAHHEIDLKNPQ------------- 158
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
+ GFT ER+ F +L +G +D +R + +K+ D WS + R R
Sbjct: 159 --SNHHNAGFTDEERQSFTKLLDQG-FMDTFRHFYPDKE-DIYSWWSYRFHSRDRNAGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
IDYF+ S+ L D I ++ L +GSDHCPV L
Sbjct: 215 IDYFVTSKRLADHISDSKI------LTDIFGSDHCPVEL 247
>gi|15893514|ref|NP_346863.1| exodeoxyribonuclease (exoA) [Clostridium acetobutylicum ATCC 824]
gi|337735433|ref|YP_004634880.1| exodeoxyribonuclease ExoA [Clostridium acetobutylicum DSM 1731]
gi|384456943|ref|YP_005669363.1| Exodeoxyribonuclease (exoA) [Clostridium acetobutylicum EA 2018]
gi|15023055|gb|AAK78203.1|AE007535_5 Exodeoxyribonuclease (exoA) [Clostridium acetobutylicum ATCC 824]
gi|325507632|gb|ADZ19268.1| Exodeoxyribonuclease (exoA) [Clostridium acetobutylicum EA 2018]
gi|336292303|gb|AEI33437.1| exodeoxyribonuclease (exoA) [Clostridium acetobutylicum DSM 1731]
Length = 250
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 87/279 (31%), Positives = 138/279 (49%), Gaps = 36/279 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F ++ D DV LQ + Y +W+ A
Sbjct: 1 MKLISWNVNGLRACITKG---FLDYFKEVDADVFCLQETKIQEGQVELELPGYYDFWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ KK K +S+S K++ +GRVI EFE FY++ Y PN+ KE
Sbjct: 58 EKKGYSGTAIFTKK----KPISYSYGINEEKHDKEGRVITLEFEDFYMVTVYTPNS--KE 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ + R +W+ + ++ KP+I CGD+NV+H EID+ +P
Sbjct: 112 KLARLEYRMEWEDSFRNYLKALDEKKPVIVCGDMNVAHTEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER +F +L+ G ID YR+ + +K+ + WS + + R
Sbjct: 158 -KTNTKNAGFSPEERSKFTELLEAG-FIDTYRYFYPDKEGIYSW-WSYRFKAREKNAGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
IDYF SE LKD++++ ++ + GSDHCPV L
Sbjct: 215 IDYFCTSERLKDKLVSADIHTEVM------GSDHCPVEL 247
>gi|423598952|ref|ZP_17574952.1| exodeoxyribonuclease [Bacillus cereus VD078]
gi|401237222|gb|EJR43679.1| exodeoxyribonuclease [Bacillus cereus VD078]
Length = 252
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 88/284 (30%), Positives = 145/284 (51%), Gaps = 39/284 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPF--KNYQIWWSLA 99
+K ++WN N L + F ++ + D+ LQ + + Y +W+ A
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKLQSGQIDLNPEGYYTYWNYA 58
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ KK +P V++ L +++ +GRVI EFE FY++ Y PN+ K
Sbjct: 59 VKKGYSGTAIFTKK--EPISVTYGL--GIEEHDQEGRVITLEFEDFYMITLYTPNS--KR 112
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R KW+ + ++ + + K +++CGDLNV+H+EID+ +P
Sbjct: 113 GLERLDYRMKWEDDFRAYIKRLNEKKSVVFCGDLNVAHKEIDLKNP-------------- 158
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
K + PGF+ ER++F L+EG +D YR+L+ D + +SW +G R K +
Sbjct: 159 -KSNRKNPGFSDEEREQFTRTLEEG-FVDTYRYLY--PDQEGAYSWWSYRMGA-RAKNIG 213
Query: 277 -RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
R+DYF+VSE +KD+I ++ GSDHCPV L ++
Sbjct: 214 WRLDYFVVSERMKDKITEAKINSE------IMGSDHCPVELHIN 251
>gi|468371|gb|AAA21019.1| apurinic/apyrimidinic endonuclease [Rattus norvegicus]
Length = 316
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 97/323 (30%), Positives = 163/323 (50%), Gaps = 45/323 (13%)
Query: 6 KPIEKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSN 65
K EKE + + P L D +T+ + K LK +WN + L +K + +
Sbjct: 29 KKTEKEAAGEGPVLYEDPPDQKTSASG-----KSATLKICSWNVDGLRAWIKK---KGLD 80
Query: 66 FITTFDPDVIALQ-------ILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPK 117
++ PD++ LQ L L P +Q W + +D + Y+G LL ++C P
Sbjct: 81 WVKEEAPDILCLQETKCSENKLPAELQELPGLTHQYWSAPSDKEGYSGVGLLSRQC--PL 138
Query: 118 KVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV 177
KVS+ + + +++ +GRVI+AEFE+F L+ Y PN G + R++WD+ ++F+
Sbjct: 139 KVSYGIGEE--EHDQEGRVIVAEFESFILVTAYVPNAG--RGLVRLEYRQRWDEAFRKFL 194
Query: 178 LQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFG 236
S KPL+ CGDLNV+HEEID+ +P+ NK++ GFT E + FG
Sbjct: 195 KDLASRKPLVLCGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQEAQGFG 239
Query: 237 AILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEM 296
+L+ L D++R L+ F W+ + + R+DYF++S+ L + ++
Sbjct: 240 EMLQAVPLADSFRHLYPNTAYAYTF-WTYMMNARSKNVGWRLDYFLLSQSLLPALCDSKI 298
Query: 297 QGHGIELEGFYGSDHCPVSLELS 319
+ + GSDHCP++L L+
Sbjct: 299 RSKAL------GSDHCPITLYLA 315
>gi|345022885|ref|ZP_08786498.1| exodeoxyribonuclease III Xth [Ornithinibacillus scapharcae TW25]
Length = 252
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 90/282 (31%), Positives = 139/282 (49%), Gaps = 36/282 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K V+WN N L V+ + ++ N I D D+ +Q L Y +W+ A
Sbjct: 1 MKLVSWNVNGLRACVRKGFLDYFNEI---DADIFCIQETKLQEGQIELELNGYHQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K F+P V + L + E GR++ EFE F+L+N Y PN+ +
Sbjct: 58 EKKGYSGTAVFTK--FKPISVKYGLSNEESQVE--GRILTLEFENFFLINVYTPNS--QR 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R +W+ + E VL KP++ CGDLNV+H EID+ +
Sbjct: 112 DLARLDVRLEWEDVLLEHVLAHDRIKPVVLCGDLNVAHREIDIRNY-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K ++G GFT ER++ L G ID R+ H + + + WS + R R
Sbjct: 158 -KSNYGNSGFTDEEREKMTRFLNAG-FIDTLRYFHPDTEGIYTW-WSYMKTVRERNIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
IDYFIVSE L++++I + +GSDHCP+ L++S
Sbjct: 215 IDYFIVSERLREKLIDSKAD------TAIFGSDHCPIVLDIS 250
>gi|340758618|ref|ZP_08695204.1| exodeoxyribonuclease [Fusobacterium varium ATCC 27725]
gi|251835305|gb|EES63846.1| exodeoxyribonuclease [Fusobacterium varium ATCC 27725]
Length = 253
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 90/282 (31%), Positives = 143/282 (50%), Gaps = 38/282 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L V+ F ++ + D+ +Q L + Y +W+ A
Sbjct: 1 MKLISWNVNGLRAAVQKG---FLDYFKNENADIFCIQETKLQEGQIELDLEGYHQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ KK +P +VS+ L +++ +GRVI E+E FY++ Y PN+ +E
Sbjct: 58 EKKGYSGTAIFTKK--KPIEVSYGL--GIEEHDKEGRVITLEYEDFYMITVYTPNS--QE 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R W+ + +V++ KP+I CGDLNV+H+EID+ +P
Sbjct: 112 ELARLDYRMSWEDEFRNYVMKLDKLKPVIICGDLNVAHKEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
K + GF+ ER +F +L+ G ID++R + E + +S WS +
Sbjct: 158 -KSNRKNAGFSDEERAKFTELLENG-FIDSFRHFYPE--VTGAYSWWSYRFNARKNNAGW 213
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF+VSE LKD + E+ + GSDHCPV L+L
Sbjct: 214 RIDYFVVSERLKDIMEGAEIHNEIL------GSDHCPVVLKL 249
>gi|281422472|ref|ZP_06253471.1| exodeoxyribonuclease III [Prevotella copri DSM 18205]
gi|281403455|gb|EFB34135.1| exodeoxyribonuclease III [Prevotella copri DSM 18205]
Length = 250
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 87/283 (30%), Positives = 144/283 (50%), Gaps = 39/283 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+KF++WN N L V +F N D D LQ + F+ Y+ +W+ A
Sbjct: 1 MKFISWNVNGLRACVG---KDFENQFKELDADFFCLQETKMQEGQLDLQFEGYESYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K +P VS+ + +++ +GR+I E++ FYL+ Y PN+ +
Sbjct: 58 EKKGYSGTAIYTKH--KPLNVSYGM--GVEEHDHEGRIITLEYDQFYLVTCYTPNS--QT 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R W+ ++F+ K P+I CGDLNV+HEEID+ +P
Sbjct: 112 ELKRLDYRMTWEDDFRKFLKSLDAKKPVIICGDLNVAHEEIDIKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
K + GFT ER++ +L +G D++R+LH + + +S WS + +
Sbjct: 158 -KTNRRNAGFTDEEREKMTVLLNDG-FTDSFRYLHPD---EVTYSWWSYRFKAREKNAGW 212
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
RIDYF+VS+ +K++I ++ + GSDHCPV ++L+
Sbjct: 213 RIDYFLVSDRIKEQITEAKIHTEIM------GSDHCPVEVDLT 249
>gi|423469951|ref|ZP_17446695.1| exodeoxyribonuclease [Bacillus cereus BAG6O-2]
gi|423558712|ref|ZP_17535014.1| exodeoxyribonuclease [Bacillus cereus MC67]
gi|401190966|gb|EJQ98002.1| exodeoxyribonuclease [Bacillus cereus MC67]
gi|402437203|gb|EJV69227.1| exodeoxyribonuclease [Bacillus cereus BAG6O-2]
Length = 252
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 89/283 (31%), Positives = 144/283 (50%), Gaps = 39/283 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPF--KNYQIWWSLA 99
+K ++WN N L + F ++ + D+ LQ + + Y +W+ A
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKLQSGQIDLNPEGYYTYWNYA 58
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ +K +P V++ L +++ +GRVI EFE FY++ Y PN+ K
Sbjct: 59 VKKGYSGTAIFTRK--EPIAVTYGL--GIEEHDQEGRVITLEFEDFYIITLYTPNS--KR 112
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R +W+ + ++ + KP+I+CGDLNV+H+EID+ +P
Sbjct: 113 GLERLDYRMEWEDDFRAYIKRLDEKKPVIFCGDLNVAHKEIDLKNP-------------- 158
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
K + PGF+ ER++F IL+EG +D YRFL+ D + +SW +G R K +
Sbjct: 159 -KSNRKNPGFSDEEREKFTNILEEG-FVDTYRFLY--PDQEGAYSWWSYRMGA-RAKNIG 213
Query: 277 -RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
R+DYF+ SE LK +I ++ + GSDHCPV L +
Sbjct: 214 WRLDYFVTSERLKHKITDAKINSEVM------GSDHCPVELHI 250
>gi|407706141|ref|YP_006829726.1| hypothetical protein MC28_2905 [Bacillus thuringiensis MC28]
gi|407383826|gb|AFU14327.1| Exodeoxyribonuclease [Bacillus thuringiensis MC28]
Length = 252
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 90/284 (31%), Positives = 145/284 (51%), Gaps = 39/284 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F ++ + D+ LQ L + Y +W+ A
Sbjct: 1 MKLISWNVNGLRAVITKG--GFLEYLEESNADIFCLQEIKLQSGQIDLNLEGYYTYWNYA 58
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ KK +P V++ L +++ +GRVI EFE FY++ Y PN+ K
Sbjct: 59 VKKGYSGTAIFTKK--EPLSVTYGL--GIEEHDQEGRVITLEFEDFYMITLYTPNS--KR 112
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R +W+ + ++ Q KP+I+CGDLNV+H+EID+ +P
Sbjct: 113 GLERLDYRMEWEDDFRAYIKQLDEKKPVIFCGDLNVAHKEIDLKNP-------------- 158
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
K + PGF+ ER++F IL+EG +D YR L+ + + +SW +G R K +
Sbjct: 159 -KSNRKNPGFSDEEREKFTRILEEG-FVDTYRHLY--PNQEGAYSWWSYRMGA-RAKNIG 213
Query: 277 -RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
R+DYF+VS+ +K +I ++ I GSDHCPV L ++
Sbjct: 214 WRLDYFVVSDRIKGQITDAKINSEII------GSDHCPVELHIN 251
>gi|335430178|ref|ZP_08557073.1| exodeoxyribonuclease III Xth [Haloplasma contractile SSD-17B]
gi|334888594|gb|EGM26891.1| exodeoxyribonuclease III Xth [Haloplasma contractile SSD-17B]
Length = 251
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 90/285 (31%), Positives = 149/285 (52%), Gaps = 45/285 (15%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K V+WN N L +K + EF N + D+ A+Q + + F+ Y +W+ A
Sbjct: 1 MKLVSWNVNGLRACMKKGFKEFFN---EMNADLFAIQETKMQEEQKTFDFEGYHEFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
D K Y+GT + K+ +P V + ++ + KY +GR+I EF+ F+ + Y PN+ +
Sbjct: 58 DKKGYSGTLIYSKQ--KPLNVVYGIDGS--KYNDEGRIITLEFKNFFFVTAYVPNS--QR 111
Query: 159 EENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R +++ + ++ + S KP+I CGDLNV+H EID+++P
Sbjct: 112 SLARLDYRMEFEDDFRAYLKKLDSLKPVIMCGDLNVAHREIDLTNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GFTI ER+++ ++L EG D+YR+LH EK +S+ N + R R
Sbjct: 158 -KNNEKNAGFTIEERRKYQSLLDEG-FTDSYRYLHPEKVEYSWWSYMFN--ARKRNIGWR 213
Query: 278 IDYFIVSEELK----DRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF++S +L+ D II + + GSDHCP+SL++
Sbjct: 214 IDYFVISNKLRGQLNDSIIHTQTE----------GSDHCPISLDI 248
>gi|30585287|gb|AAP36916.1| Homo sapiens APEX nuclease (multifunctional DNA repair enzyme) 1
[synthetic construct]
gi|60653967|gb|AAX29676.1| APEX nuclease 1 [synthetic construct]
Length = 319
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 96/320 (30%), Positives = 164/320 (51%), Gaps = 45/320 (14%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 DKEAAGEGPALYEDPPDQKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQ-------ILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVS 120
PD++ LQ L L P ++Q W + +D + Y+G LL ++C P KVS
Sbjct: 86 EEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVS 143
Query: 121 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ- 179
+ + + +++ +GRVI+AEF++F L+ Y PN G + R++WD+ ++F+
Sbjct: 144 YGIGEE--EHDQEGRVIVAEFDSFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGL 199
Query: 180 CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 239
S KPL+ CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L
Sbjct: 200 ASRKPLVLCGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELL 244
Query: 240 KEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGH 299
+ L D++R L+ F W+ + + R+DYF++S L + +++
Sbjct: 245 QAVPLADSFRHLYPNTPYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSK 303
Query: 300 GIELEGFYGSDHCPVSLELS 319
+ GSDHCP++L L+
Sbjct: 304 AL------GSDHCPITLYLA 317
>gi|423452962|ref|ZP_17429815.1| exodeoxyribonuclease [Bacillus cereus BAG5X1-1]
gi|401139521|gb|EJQ47083.1| exodeoxyribonuclease [Bacillus cereus BAG5X1-1]
Length = 252
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 89/283 (31%), Positives = 144/283 (50%), Gaps = 39/283 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPF--KNYQIWWSLA 99
+K ++WN N L + F ++ + D+ LQ + + Y +W+ A
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNTDIFCLQEIKLQSGQIDLNPEGYYTYWNYA 58
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ +K +P V++ L +++ +GRVI EFE FY++ Y PN+ K
Sbjct: 59 VKKGYSGTAIFTRK--EPIAVTYGL--GIEEHDQEGRVITLEFEDFYIITLYTPNS--KR 112
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R +W+ + ++ + KP+I+CGDLNV+H+EID+ +P
Sbjct: 113 GLERLDYRMEWEDDFRAYIKRLDEKKPVIFCGDLNVAHKEIDLKNP-------------- 158
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
K + PGF+ ER++F IL+EG +D YRFL+ D + +SW +G R K +
Sbjct: 159 -KSNRKNPGFSDEEREKFTNILEEG-FVDTYRFLY--PDQEGAYSWWSYRMGA-RAKNIG 213
Query: 277 -RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
R+DYF+ SE LK +I ++ + GSDHCPV L +
Sbjct: 214 WRLDYFVTSERLKHKITDAKINSEVM------GSDHCPVELHI 250
>gi|194699264|gb|ACF83716.1| unknown [Zea mays]
gi|413917520|gb|AFW57452.1| hypothetical protein ZEAMMB73_666233 [Zea mays]
Length = 166
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 69/166 (41%), Positives = 100/166 (60%), Gaps = 40/166 (24%)
Query: 1 MKRFFKPIEKECSAKKPALSPSKK--DGETTETSS-------EENSKKDPLKFVTWNANS 51
MKRFF+P+ K+ S K L+ + + DG T+ ++ E ++P KF+TWNANS
Sbjct: 1 MKRFFQPVPKDGSPSKKRLAGAAEPGDGPTSAGAATGAGGDVEGRPTEEPFKFLTWNANS 60
Query: 52 LLLRVKNNWPEFSNFITTFDPDVIALQ-------------------------------IL 80
LLLR+K++WP FS + DPDVI +Q ++
Sbjct: 61 LLLRMKSDWPAFSQLVARLDPDVICVQEVRMPAAGSKGAPKNPSELKDDTSLSRDEKQVV 120
Query: 81 MRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKT 126
+RALS+ PFK+Y++WWSL+DSKYAGTA+ +KK F+PKKVSF+L++T
Sbjct: 121 LRALSASPFKDYRVWWSLSDSKYAGTAMFIKKKFEPKKVSFNLDRT 166
>gi|344305891|ref|XP_003421623.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like
[Loxodonta africana]
Length = 318
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 96/320 (30%), Positives = 163/320 (50%), Gaps = 45/320 (14%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 DKEAAGEGPALYEDPPDRKTSPSG-----KSATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQ-------ILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVS 120
PD++ LQ L L P ++Q W + +D + Y+G LL ++C P KVS
Sbjct: 86 EEAPDILCLQETKCSEKKLPAELQDLPGLSHQYWLAPSDKEGYSGVGLLSRQC--PLKVS 143
Query: 121 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ- 179
+ + + +++ +GRVI+AEF+ F L+ Y PN G R++WD+ ++F+
Sbjct: 144 YGIGEE--EHDQEGRVIVAEFDAFVLVTVYVPNAG--RGLVRLDYRQRWDEAFRKFLKGL 199
Query: 180 CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 239
S KPL+ CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L
Sbjct: 200 ASRKPLVLCGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELL 244
Query: 240 KEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGH 299
+ L D++R L+ + F W+ + + R+DYF++S L + +++
Sbjct: 245 QAVPLADSFRHLYPDTAYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSK 303
Query: 300 GIELEGFYGSDHCPVSLELS 319
+ GSDHCP++L L+
Sbjct: 304 AL------GSDHCPITLLLA 317
>gi|347753480|ref|YP_004861045.1| exodeoxyribonuclease III [Bacillus coagulans 36D1]
gi|347585998|gb|AEP02265.1| exodeoxyribonuclease III [Bacillus coagulans 36D1]
Length = 251
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 90/282 (31%), Positives = 144/282 (51%), Gaps = 40/282 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+KFV+WN N L VK F F D D+ +Q L + Y +W+ A
Sbjct: 1 MKFVSWNVNGLRACVKKG---FLAFFAETDADIFCVQETKLQAGQIALDLDGYYQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ KK +P V + + + + EP+GR++ E+E FYL+N Y PN+ +
Sbjct: 58 ERKGYSGTAVFTKK--EPLSVRYGVGED--RTEPEGRILTLEYEDFYLVNVYTPNS--QR 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R +W+ R++ ++ + KP+I CGD+NV+H+EID+ +
Sbjct: 112 DLARLGYRLEWEDRMRAYLTELDKKKPVIVCGDMNVAHQEIDLKNA-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
K + G GFT ER + +L G ID++R+ + E+ + ++W + + K R + +
Sbjct: 158 -KNNVGNSGFTAEERGKMTGLLNSG-FIDSFRYFYPER--EGAYTWW-SYMNKVRERNIG 212
Query: 277 -RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLE 317
RIDYF+VS+ L R+ M GSDHCPV LE
Sbjct: 213 WRIDYFLVSKRLAGRLKDAGMYPE------IMGSDHCPVFLE 248
>gi|403340594|gb|EJY69586.1| Exodeoxyribonuclease III family protein [Oxytricha trifallax]
Length = 437
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 92/300 (30%), Positives = 149/300 (49%), Gaps = 48/300 (16%)
Query: 37 SKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIAL---QILMRALSSPPFKNYQ 93
S+++PLK WN N + +K+ +F F P ++ L +I + AL+ K
Sbjct: 87 SQEEPLKIWHWNVNGIRAVLKSG--KFQEFCEKAQPHILCLNETKIDVDALAKENIKLQI 144
Query: 94 IWWSLADSKY----------AGTALLVKKCFQ---PKKVSFSLEKTALKYEPDGRVILAE 140
W D++Y AGTA+L+ K ++ P KV + + + K++ +GR++ A+
Sbjct: 145 AKWFPIDTQYWNCCIVKKGYAGTAILINKNYKGSKPTKVEYGIGIS--KHDKEGRMVNAQ 202
Query: 141 FETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC---SGKPLIWCGDLNVSHEE 197
F+ F L+ TY PN G + R +WD+ ++ +GKP+IWCGDLNV++E
Sbjct: 203 FDKFNLVATYIPNAGVMGLDRLGYRVNEWDRDFHTYLKNTEVTTGKPVIWCGDLNVANEP 262
Query: 198 IDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDM 257
ID+ Y P KE G+TI ER F A LK+ ID YR L+
Sbjct: 263 IDI-------------YNPKGKEK--SAGYTIQERNSFKAFLKDRAFIDTYRHLNPH--- 304
Query: 258 DCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
+S W+ + + + R+DYF+VS+ + ++ E+ ++GSDHCP+SL
Sbjct: 305 SVKYSYWNLRSGARDKDQGWRLDYFVVSDFMMPSVLTSEINNE------YHGSDHCPLSL 358
>gi|423367719|ref|ZP_17345151.1| exodeoxyribonuclease [Bacillus cereus VD142]
gi|401083372|gb|EJP91630.1| exodeoxyribonuclease [Bacillus cereus VD142]
Length = 252
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 87/283 (30%), Positives = 145/283 (51%), Gaps = 39/283 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPF--KNYQIWWSLA 99
+K ++WN N L + F ++ + D+ LQ + + Y +W+ A
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKLQSGQIDLNPEGYYTYWNYA 58
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ KK +P V++ L +++ +GRVI EF+ FY++ Y PN+ K
Sbjct: 59 VKKGYSGTAIFTKK--EPISVTYGL--GIEEHDQEGRVITLEFDDFYMITLYTPNS--KR 112
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R +W+ + ++ + KP+I+CGDLNV+H+E+D+ +P
Sbjct: 113 GLERLDYRMEWEDDFRAYIKRLDEKKPVIFCGDLNVAHKEVDLKNP-------------- 158
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
K + PGF+ ER++F +L+EG ID YR+L+ D + +SW +G R K +
Sbjct: 159 -KSNRKNPGFSDEEREKFTCVLEEG-FIDTYRYLY--PDQEGAYSWWSYRMGA-RAKNIG 213
Query: 277 -RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
R+DYF++SE LK +I ++ + GSDHCPV L +
Sbjct: 214 WRLDYFVISERLKHKITDAKINSEVM------GSDHCPVELHI 250
>gi|125490347|ref|NP_001074954.1| DNA-(apurinic or apyrimidinic site) lyase [Pan troglodytes]
gi|397481065|ref|XP_003811777.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Pan paniscus]
gi|397481067|ref|XP_003811778.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Pan paniscus]
gi|397481069|ref|XP_003811779.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Pan paniscus]
gi|146286033|sp|A1YFZ3.1|APEX1_PANPA RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; AltName: Full=REF-1; AltName: Full=Redox
factor-1; Contains: RecName: Full=DNA-(apurinic or
apyrimidinic site) lyase, mitochondrial
gi|146286034|sp|A2T6Y4.1|APEX1_PANTR RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; AltName: Full=REF-1; AltName: Full=Redox
factor-1; Contains: RecName: Full=DNA-(apurinic or
apyrimidinic site) lyase, mitochondrial
gi|219474|dbj|BAA02633.1| APEX nuclease [Homo sapiens]
gi|1710232|gb|AAB50212.1| apurinic/apyrimidinic endonuclease [Homo sapiens]
gi|12803075|gb|AAH02338.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Homo sapiens]
gi|14198174|gb|AAH08145.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Homo sapiens]
gi|17939646|gb|AAH19291.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Homo sapiens]
gi|30583311|gb|AAP35900.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Homo sapiens]
gi|61358640|gb|AAX41599.1| APEX nuclease 1 [synthetic construct]
gi|61362429|gb|AAX42220.1| APEX nuclease 1 [synthetic construct]
gi|61362434|gb|AAX42221.1| APEX nuclease 1 [synthetic construct]
gi|121483845|gb|ABM54218.1| APEX1 [Pan paniscus]
gi|123981822|gb|ABM82740.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [synthetic
construct]
gi|123996645|gb|ABM85924.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [synthetic
construct]
gi|124111123|gb|ABM91939.1| APEX1 [Pan troglodytes]
gi|208965824|dbj|BAG72926.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [synthetic
construct]
gi|410220880|gb|JAA07659.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Pan
troglodytes]
gi|410220882|gb|JAA07660.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Pan
troglodytes]
gi|410220884|gb|JAA07661.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Pan
troglodytes]
gi|410256572|gb|JAA16253.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Pan
troglodytes]
gi|410256574|gb|JAA16254.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Pan
troglodytes]
gi|410256576|gb|JAA16255.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Pan
troglodytes]
gi|410294028|gb|JAA25614.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Pan
troglodytes]
gi|410294030|gb|JAA25615.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Pan
troglodytes]
gi|410294032|gb|JAA25616.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Pan
troglodytes]
gi|1090503|prf||2019234A APEX nuclease
Length = 318
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 96/320 (30%), Positives = 164/320 (51%), Gaps = 45/320 (14%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 DKEAAGEGPALYEDPPDQKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQ-------ILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVS 120
PD++ LQ L L P ++Q W + +D + Y+G LL ++C P KVS
Sbjct: 86 EEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVS 143
Query: 121 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ- 179
+ + + +++ +GRVI+AEF++F L+ Y PN G + R++WD+ ++F+
Sbjct: 144 YGIGEE--EHDQEGRVIVAEFDSFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGL 199
Query: 180 CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 239
S KPL+ CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L
Sbjct: 200 ASRKPLVLCGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELL 244
Query: 240 KEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGH 299
+ L D++R L+ F W+ + + R+DYF++S L + +++
Sbjct: 245 QAVPLADSFRHLYPNTPYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSK 303
Query: 300 GIELEGFYGSDHCPVSLELS 319
+ GSDHCP++L L+
Sbjct: 304 AL------GSDHCPITLYLA 317
>gi|297694584|ref|XP_002824554.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase isoform 1
[Pongo abelii]
gi|395745632|ref|XP_003778302.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Pongo abelii]
gi|395745635|ref|XP_003778303.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Pongo abelii]
gi|146286035|sp|A2T7I6.1|APEX1_PONPY RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; AltName: Full=REF-1; AltName: Full=Redox
factor-1; Contains: RecName: Full=DNA-(apurinic or
apyrimidinic site) lyase, mitochondrial
gi|124054149|gb|ABM89264.1| APEX1 [Pongo pygmaeus]
Length = 318
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 96/320 (30%), Positives = 163/320 (50%), Gaps = 45/320 (14%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 DKEAAGEGPALYEDPPDQKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQ-------ILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVS 120
PD++ LQ L L P ++Q W + +D + Y+G LL ++C P KVS
Sbjct: 86 EEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVS 143
Query: 121 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ- 179
+ + + +++ +GRVI+AEF++F L+ Y PN G + R++WD+ + F+
Sbjct: 144 YGIGEE--EHDQEGRVIVAEFDSFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRRFLKGL 199
Query: 180 CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 239
S KPL+ CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L
Sbjct: 200 ASRKPLVLCGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELL 244
Query: 240 KEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGH 299
+ L D++R L+ F W+ + + R+DYF++S L + +++
Sbjct: 245 QAVPLADSFRHLYPNTPYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLTALCDSKIRSK 303
Query: 300 GIELEGFYGSDHCPVSLELS 319
+ GSDHCP++L L+
Sbjct: 304 AL------GSDHCPITLYLA 317
>gi|395502892|ref|XP_003755807.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase isoform 2
[Sarcophilus harrisii]
Length = 320
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 91/293 (31%), Positives = 150/293 (51%), Gaps = 40/293 (13%)
Query: 36 NSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ-------ILMRALSSPP 88
+ K LK +WN + L +K + +++ PD++ LQ L L P
Sbjct: 58 SGKPSTLKICSWNVDGLRAWIKK---KGLDWVKEEAPDILCLQETKCSESKLPSELQDLP 114
Query: 89 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 147
YQ W S D + Y+G LL ++C P V+F + + +++ +GRVI+AEFE F L+
Sbjct: 115 GLTYQYWSSPTDKEGYSGVGLLSRQC--PLNVTFGIGEE--EHDQEGRVIVAEFEAFVLV 170
Query: 148 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFF 206
Y PN G + R++WD+ ++F+ + K PL+ CGDLNV+HEEID+ +P+
Sbjct: 171 TAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLNAKKPLVLCGDLNVAHEEIDLRNPKG- 227
Query: 207 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 266
NK++ GFT ER+ FG +L+ L D++R L+ E F W+
Sbjct: 228 -----------NKKN---AGFTPQERQGFGELLQAVPLTDSFRHLYPEAAYAYTF-WTYM 272
Query: 267 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
+ + R+DYF++S+ L + +++ + GSDHCP++L L+
Sbjct: 273 MNARAKNVGWRLDYFLLSQSLLPALCDSKIRSKAL------GSDHCPITLLLA 319
>gi|334319618|ref|XP_001379263.2| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like
[Monodelphis domestica]
Length = 320
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 91/293 (31%), Positives = 151/293 (51%), Gaps = 40/293 (13%)
Query: 36 NSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ-------ILMRALSSPP 88
+ K LK +WN + L +K + +++ PD++ LQ L L P
Sbjct: 58 SGKSSTLKICSWNVDGLRAWIKK---KGLDWVKEEAPDILCLQETKCSESKLPPELQDLP 114
Query: 89 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 147
YQ W S +D + Y+G LL ++C P V++ + + +++ +GRVI+AEFE F L+
Sbjct: 115 GLTYQYWSSPSDKEGYSGVGLLSRQC--PLSVTYGIGEE--EHDQEGRVIVAEFEAFVLV 170
Query: 148 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFF 206
Y PN G + R++WD+ ++F+ S K PL+ CGDLNV+HEEID+ +P+
Sbjct: 171 TAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLSAKKPLVLCGDLNVAHEEIDLRNPK-- 226
Query: 207 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 266
NK++ GFT ER+ FG +L+ L D++R L+ E F W+
Sbjct: 227 ----------GNKKN---AGFTPQERQGFGELLQAVPLTDSFRHLYPEAAYAYTF-WTYM 272
Query: 267 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
+ + R+DYF++S+ L + +++ + GSDHCP++L L+
Sbjct: 273 MNARAKNVGWRLDYFLLSQALLPALCDSKIRSKAL------GSDHCPITLLLA 319
>gi|402303594|ref|ZP_10822685.1| exodeoxyribonuclease III [Selenomonas sp. FOBRC9]
gi|400378209|gb|EJP31070.1| exodeoxyribonuclease III [Selenomonas sp. FOBRC9]
Length = 250
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 94/287 (32%), Positives = 138/287 (48%), Gaps = 46/287 (16%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQIL-----MRALSSPPFKNYQIWW 96
++FV+WN N L +K F D D LQ L P ++ Y ++
Sbjct: 1 MRFVSWNVNGLRAALKKG---FMESFKELDADAFCLQETKMQEGQAILDLPGYEQY--FY 55
Query: 97 SLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 156
S Y+GTA+ + K +S + +++ +GRVI EF+ YL+ Y PN+
Sbjct: 56 SAEKKGYSGTAIFTR----VKPLSVARGIGIPQHDNEGRVITMEFDDLYLVTVYTPNS-- 109
Query: 157 KEEENSFQR---RRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLN 212
+N+ R R W+ + F+L+ S KP++ CGDLNV+H EID+ +P
Sbjct: 110 ---QNALARLDYRMAWEDAFRAFLLELRSKKPVVVCGDLNVAHTEIDLKNP--------- 157
Query: 213 GYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYR 272
K + GFT ER +FG +L G +D +R L+ +K + WS +
Sbjct: 158 ------KSNRRNAGFTDEERGKFGELLAAG-FVDTFRALYPDK-VGAYTWWSYLRHARET 209
Query: 273 GKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
RIDYF+VSEEL+ RI A E+ +GSDHCPVSL LS
Sbjct: 210 NAGWRIDYFLVSEELRGRIAAAEIHAD------IFGSDHCPVSLTLS 250
>gi|373471031|ref|ZP_09562109.1| exodeoxyribonuclease III [Lachnospiraceae bacterium oral taxon 082
str. F0431]
gi|371761191|gb|EHO49827.1| exodeoxyribonuclease III [Lachnospiraceae bacterium oral taxon 082
str. F0431]
Length = 259
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 91/285 (31%), Positives = 141/285 (49%), Gaps = 40/285 (14%)
Query: 40 DPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWS 97
D K ++WN N L V F +F D D+ +Q L Y +W+
Sbjct: 7 DMKKMISWNVNGLRAAVTKG---FLDFFRDIDADIFCIQESKLSEGQIELDLPGYYDYWN 63
Query: 98 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 156
A K Y+G A+ K +P V++ + +++ +GRVI AE+E FY++ Y PN+
Sbjct: 64 YAQKKGYSGVAVFTKD--KPLNVTYGI--GIEEHDNEGRVITAEYEDFYMITCYTPNS-- 117
Query: 157 KEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 215
+ + R W+ +++L+ KP+I+CGDLNV+H EID+ +P
Sbjct: 118 QRGLTRLEYRMTWEDAFLKYILELEKNKPVIFCGDLNVAHTEIDLKNP------------ 165
Query: 216 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 275
K + GFT ER + IL G +D++R L+ +K +SW + +G R K
Sbjct: 166 ---KTNRKNAGFTDEERAKMDVILSSG-FVDSFRVLYPDK--TDAYSW-WSYMGGARAKN 218
Query: 276 M--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
+ RIDYFIVS +LKDRI ++ +GSDHCPV L++
Sbjct: 219 VGWRIDYFIVSAKLKDRIKEAKIHSE------IFGSDHCPVELDI 257
>gi|60652565|gb|AAX28977.1| APEX nuclease 1 [synthetic construct]
Length = 319
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 96/320 (30%), Positives = 163/320 (50%), Gaps = 45/320 (14%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 DKEAAGEGPALYEDPPDQKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQ-------ILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVS 120
PD++ LQ L L P ++Q W + +D + Y+G LL ++C P KVS
Sbjct: 86 EEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVS 143
Query: 121 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ- 179
+ + +++ +GRVI+AEF++F L+ Y PN G + R++WD+ ++F+
Sbjct: 144 YGIGDE--EHDQEGRVIVAEFDSFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGL 199
Query: 180 CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 239
S KPL+ CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L
Sbjct: 200 ASRKPLVLCGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELL 244
Query: 240 KEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGH 299
+ L D++R L+ F W+ + + R+DYF++S L + +++
Sbjct: 245 QAVPLADSFRHLYPNTPYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSK 303
Query: 300 GIELEGFYGSDHCPVSLELS 319
+ GSDHCP++L L+
Sbjct: 304 AL------GSDHCPITLYLA 317
>gi|375086371|ref|ZP_09732783.1| exodeoxyribonuclease III (xth) [Megamonas funiformis YIT 11815]
gi|374565408|gb|EHR36677.1| exodeoxyribonuclease III (xth) [Megamonas funiformis YIT 11815]
Length = 251
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 94/284 (33%), Positives = 146/284 (51%), Gaps = 42/284 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQIL-----MRALSSPPFKNYQIWW 96
+KFV+WN N L + F T D D+ LQ L P +K Y W
Sbjct: 1 MKFVSWNVNGLRACMNKG---FMETFQTLDADIFCLQETKMQPHQLELDLPRYKQY---W 54
Query: 97 SLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNG 155
+ A+ K Y+GTA+ K +P VS+ L +++ +GRVI EF+ F+++ Y PN+
Sbjct: 55 NSAEKKGYSGTAIFTK--VEPLNVSYGL--GIEEHDHEGRVITLEFDKFFMVCVYTPNS- 109
Query: 156 WKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY 214
K E R +W+ + ++++ + KP++ CGDLNV+H+EID+ +P
Sbjct: 110 -KRELERLDYRMQWEDAFRNYLVELNKQKPVVMCGDLNVAHKEIDLKNP----------- 157
Query: 215 VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGK 274
K + GFT ER + +L+ G +D +R+L+ +K + WS +
Sbjct: 158 ----KTNRRSAGFTDEERSKMTELLQAG-FVDTFRYLYPDKTSIYSW-WSYMRKARENNA 211
Query: 275 RMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYFIVS+++++ I + GI E F+GSDHCPVSLEL
Sbjct: 212 GWRIDYFIVSKDIEENI-----KEAGIHNE-FFGSDHCPVSLEL 249
>gi|395502890|ref|XP_003755806.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase isoform 1
[Sarcophilus harrisii]
Length = 321
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 91/293 (31%), Positives = 150/293 (51%), Gaps = 40/293 (13%)
Query: 36 NSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ-------ILMRALSSPP 88
+ K LK +WN + L +K + +++ PD++ LQ L L P
Sbjct: 59 SGKPSTLKICSWNVDGLRAWIKK---KGLDWVKEEAPDILCLQETKCSESKLPSELQDLP 115
Query: 89 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 147
YQ W S D + Y+G LL ++C P V+F + + +++ +GRVI+AEFE F L+
Sbjct: 116 GLTYQYWSSPTDKEGYSGVGLLSRQC--PLNVTFGIGEE--EHDQEGRVIVAEFEAFVLV 171
Query: 148 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFF 206
Y PN G + R++WD+ ++F+ + K PL+ CGDLNV+HEEID+ +P+
Sbjct: 172 TAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLNAKKPLVLCGDLNVAHEEIDLRNPKG- 228
Query: 207 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 266
NK++ GFT ER+ FG +L+ L D++R L+ E F W+
Sbjct: 229 -----------NKKN---AGFTPQERQGFGELLQAVPLTDSFRHLYPEAAYAYTF-WTYM 273
Query: 267 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
+ + R+DYF++S+ L + +++ + GSDHCP++L L+
Sbjct: 274 MNARAKNVGWRLDYFLLSQSLLPALCDSKIRSKAL------GSDHCPITLLLA 320
>gi|227512799|ref|ZP_03942848.1| exodeoxyribonuclease III [Lactobacillus buchneri ATCC 11577]
gi|227083999|gb|EEI19311.1| exodeoxyribonuclease III [Lactobacillus buchneri ATCC 11577]
Length = 252
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 90/279 (32%), Positives = 139/279 (49%), Gaps = 36/279 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+KF++WN N L VK +F+ D D +Q + Y+ +++ A
Sbjct: 1 MKFISWNVNGLRAVVKK---DFAEIFQKLDADFFCIQETKMQEGQLKLDLPGYRQYFNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K +P VS+ ++ A +++ +GR I E+ FYL+ +Y PN+G K
Sbjct: 58 ERKGYSGTAIFAKD--EPLTVSYGIQ--APEFDHEGRAITLEYPNFYLVTSYVPNSGAKL 113
Query: 159 EENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ F R WDK ++ Q S KP+I CGDLNV+H EID+ +P+
Sbjct: 114 KRLDF--RMGWDKAFHAYLNQLDSHKPVILCGDLNVAHYEIDLKNPQ------------- 158
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
+ GFT ER+ F +L +G +D +R + +K+ D WS + R R
Sbjct: 159 --SNHHNAGFTDEERQSFTKLLDQG-FMDTFRHFYPDKE-DIYSWWSYRFHSRDRNAGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
IDYF+ S+ L D I ++ L +GSDHCPV L
Sbjct: 215 IDYFVTSKRLADHISDSKI------LTDIFGSDHCPVEL 247
>gi|291403439|ref|XP_002718079.1| PREDICTED: APEX nuclease 1 [Oryctolagus cuniculus]
Length = 318
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 97/320 (30%), Positives = 162/320 (50%), Gaps = 45/320 (14%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
EKE + + P L D +T+ + K LK +WN + L +K + ++I
Sbjct: 34 EKESAGEGPVLYEDPPDQKTSPSG-----KAATLKICSWNVDGLRAWIKK---KGLDWIK 85
Query: 69 TFDPDVIALQ-------ILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVS 120
PD++ LQ L L P +Q W + +D + Y+G LL ++C P KVS
Sbjct: 86 EEAPDILCLQETKCSENKLPAELQELPGLPHQYWSAPSDKEGYSGVGLLSRQC--PLKVS 143
Query: 121 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ- 179
+ + + +++ +GRVI+AEF+ F L+ Y PN G + R++WD+ ++F+
Sbjct: 144 YGIGEE--EHDQEGRVIVAEFDAFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGL 199
Query: 180 CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 239
S KPL+ CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L
Sbjct: 200 ASRKPLVLCGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELL 244
Query: 240 KEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGH 299
+ L D++R L+ + F W+ + + R+DYF++S L + +++
Sbjct: 245 QAVPLTDSFRHLYPDTAYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSK 303
Query: 300 GIELEGFYGSDHCPVSLELS 319
+ GSDHCP++L L+
Sbjct: 304 AL------GSDHCPITLYLA 317
>gi|410961722|ref|XP_003987428.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase isoform 1
[Felis catus]
gi|410961726|ref|XP_003987430.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase isoform 3
[Felis catus]
gi|410961728|ref|XP_003987431.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase isoform 4
[Felis catus]
gi|410961730|ref|XP_003987432.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase isoform 5
[Felis catus]
Length = 318
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 96/320 (30%), Positives = 163/320 (50%), Gaps = 45/320 (14%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
EKE + + P L D +T+ + K LK +WN + L +K + +++
Sbjct: 34 EKEAAGEGPVLYEDPPDQKTSPSG-----KSATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQ-------ILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVS 120
PD++ LQ L L P ++Q W + +D + Y+G LL ++C P KVS
Sbjct: 86 EEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVS 143
Query: 121 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ- 179
+ + + +++ +GRVI+AEF++F L+ Y PN G + R++WD+ ++F+
Sbjct: 144 YGIGEE--EHDQEGRVIVAEFDSFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGL 199
Query: 180 CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 239
S KPL+ CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L
Sbjct: 200 ASRKPLVLCGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELL 244
Query: 240 KEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGH 299
+ L D++R L+ F W+ + + R+DYF++S L + +++
Sbjct: 245 EAVPLADSFRHLYPNTAYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSK 303
Query: 300 GIELEGFYGSDHCPVSLELS 319
+ GSDHCP++L L+
Sbjct: 304 AL------GSDHCPITLYLA 317
>gi|118138505|pdb|2ISI|A Chain A, Crystal Structure Of Ape1 From Homo Sapiens In A New
Crystal Form Complexed With A Ligand
gi|118138506|pdb|2ISI|B Chain B, Crystal Structure Of Ape1 From Homo Sapiens In A New
Crystal Form Complexed With A Ligand
gi|118138507|pdb|2ISI|C Chain C, Crystal Structure Of Ape1 From Homo Sapiens In A New
Crystal Form Complexed With A Ligand
gi|443428279|pdb|4IEM|A Chain A, Human Apurinic/apyrimidinic Endonuclease (ape1) With
Product Dna And Mg2+
gi|443428283|pdb|4IEM|B Chain B, Human Apurinic/apyrimidinic Endonuclease (ape1) With
Product Dna And Mg2+
gi|443428287|pdb|4IEM|C Chain C, Human Apurinic/apyrimidinic Endonuclease (ape1) With
Product Dna And Mg2+
gi|443428291|pdb|4IEM|D Chain D, Human Apurinic/apyrimidinic Endonuclease (ape1) With
Product Dna And Mg2+
Length = 317
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 96/320 (30%), Positives = 163/320 (50%), Gaps = 45/320 (14%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 33 DKEAAGEGPALYEDPPDQKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 84
Query: 69 TFDPDVIALQ-------ILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVS 120
PD++ LQ L L P ++Q W + +D + Y+G LL ++C P KVS
Sbjct: 85 EEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVS 142
Query: 121 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ- 179
+ + +++ +GRVI+AEF++F L+ Y PN G + R++WD+ ++F+
Sbjct: 143 YGIGDE--EHDQEGRVIVAEFDSFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGL 198
Query: 180 CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 239
S KPL+ CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L
Sbjct: 199 ASRKPLVLCGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELL 243
Query: 240 KEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGH 299
+ L D++R L+ F W+ + + R+DYF++S L + +++
Sbjct: 244 QAVPLADSFRHLYPNTPYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSK 302
Query: 300 GIELEGFYGSDHCPVSLELS 319
+ GSDHCP++L L+
Sbjct: 303 AL------GSDHCPITLYLA 316
>gi|320529778|ref|ZP_08030856.1| exodeoxyribonuclease III [Selenomonas artemidis F0399]
gi|320138017|gb|EFW29921.1| exodeoxyribonuclease III [Selenomonas artemidis F0399]
Length = 250
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 94/287 (32%), Positives = 138/287 (48%), Gaps = 46/287 (16%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQIL-----MRALSSPPFKNYQIWW 96
++FV+WN N L +K F D D LQ L P ++ Y ++
Sbjct: 1 MRFVSWNVNGLRAALKKG---FMESFKELDADAFCLQETKMQEGQAILDLPGYEQY--FY 55
Query: 97 SLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 156
S Y+GTA+ + K +S + +++ +GRVI EF+ YL+ Y PN+
Sbjct: 56 SAEKKGYSGTAIFTR----VKPLSVARGIGIPQHDNEGRVITMEFDDLYLVTVYTPNS-- 109
Query: 157 KEEENSFQR---RRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLN 212
+N+ R R W+ + F+L+ S KP++ CGDLNV+H EID+ +P
Sbjct: 110 ---QNALARLDYRMAWEDAFRSFLLELRSKKPVVVCGDLNVAHTEIDLKNP--------- 157
Query: 213 GYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYR 272
K + GFT ER +FG +L G +D +R L+ +K + WS +
Sbjct: 158 ------KSNRRNAGFTDEERGKFGELLAAG-FVDTFRALYPDK-VGAYTWWSYLRHARET 209
Query: 273 GKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
RIDYF+VSEEL+ RI A E+ +GSDHCPVSL LS
Sbjct: 210 NAGWRIDYFLVSEELRGRIAAAEIHAD------VFGSDHCPVSLTLS 250
>gi|157830335|pdb|1BIX|A Chain A, The Crystal Structure Of The Human Dna Repair Endonuclease
Hap1 Suggests The Recognition Of Extra-Helical
Deoxyribose At Dna Abasic Sites
Length = 287
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 96/320 (30%), Positives = 163/320 (50%), Gaps = 45/320 (14%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 3 DKEAAGEGPALYEDPPDQKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 54
Query: 69 TFDPDVIALQ-------ILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVS 120
PD++ LQ L L P ++Q W + +D + Y+G LL ++C P KVS
Sbjct: 55 EEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVS 112
Query: 121 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ- 179
+ + +++ +GRVI+AEF++F L+ Y PN G + R++WD+ ++F+
Sbjct: 113 YGIGDE--EHDQEGRVIVAEFDSFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGL 168
Query: 180 CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 239
S KPL+ CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L
Sbjct: 169 ASRKPLVLCGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELL 213
Query: 240 KEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGH 299
+ L D++R L+ F W+ + + R+DYF++S L + +++
Sbjct: 214 QAVPLADSFRHLYPNTPYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSK 272
Query: 300 GIELEGFYGSDHCPVSLELS 319
+ GSDHCP++L L+
Sbjct: 273 AL------GSDHCPITLYLA 286
>gi|291519655|emb|CBK74876.1| exodeoxyribonuclease III [Butyrivibrio fibrisolvens 16/4]
Length = 250
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 141/281 (50%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPFK--NYQIWWSLA 99
+KFV+WN N L + F +F D D+I LQ + + + Y +W+ A
Sbjct: 1 MKFVSWNVNGLRAVMGKG---FMDFFDGIDADIIGLQEIKLSEGQLEWDKPGYHAYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ KK +P VS+ + +++ +GRVI EFE FY + Y PN+ +
Sbjct: 58 EKKGYSGTAVFTKK--EPISVSYGI--GIEEHDHEGRVITLEFEDFYFITCYTPNS--QN 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R W+ + ++ + + K +I CGDLNV+HEEID+ +P
Sbjct: 112 ELKRLDYRMTWEDDFRAYLQKLNEKKGVILCGDLNVAHEEIDIKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GFT ER + +L G +D++R+ + ++ D WS + + R
Sbjct: 158 -KTNRHNAGFTDEERAKMTELLSAG-FVDSFRYFYPDQ-TDIYSWWSYRFKAREKNAGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYFIVSE++KDR+ ++ + GSDHCP+ L+
Sbjct: 215 IDYFIVSEDIKDRMKDSKIHTDVM------GSDHCPIELDF 249
>gi|242309877|ref|ZP_04809032.1| exodeoxyribonuclease LexA [Helicobacter pullorum MIT 98-5489]
gi|239523878|gb|EEQ63744.1| exodeoxyribonuclease LexA [Helicobacter pullorum MIT 98-5489]
Length = 256
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 87/284 (30%), Positives = 144/284 (50%), Gaps = 40/284 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F T D DV +Q + + ++ F NY+ +W+ A
Sbjct: 5 MKLISWNVNGLRACMNKG---FMDFFNTIDADVFCIQESKMQKEQATFDFPNYEEYWNSA 61
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+G A+ KK K +S + + ++ +GR+I AE+ F+L+N Y PN+ K
Sbjct: 62 EKKGYSGVAIFSKK----KPLSVAYDMGISHHDKEGRIITAEYNDFFLVNVYTPNS--KR 115
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E + R +W+ + F+ KP+I CGDLNV+H+EID+ +P
Sbjct: 116 ELERLEYRMEWEDDFRNFLKNLEVTKPVIVCGDLNVAHKEIDLKNP-------------- 161
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
K + GFT ER++ +L G D +R+ H ++ +SW + +GK R
Sbjct: 162 -KTNRRNAGFTDEEREKMSVLLDSG-FTDTFRYFHPT--LEGAYSW-WSYMGKARENNTG 216
Query: 277 -RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
RIDYF+ S+ L ++ + + +GSDHCPV LE++
Sbjct: 217 WRIDYFLCSKALDSKLKSASIYPE------IFGSDHCPVGLEIN 254
>gi|255993955|ref|ZP_05427090.1| exodeoxyribonuclease III [Eubacterium saphenum ATCC 49989]
gi|255993623|gb|EEU03712.1| exodeoxyribonuclease III [Eubacterium saphenum ATCC 49989]
Length = 252
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 93/280 (33%), Positives = 145/280 (51%), Gaps = 36/280 (12%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ-ILMRALSSPPFKN-YQIWWSLAD 100
KF++WN N + +K F + + PD A+Q M+ N Y +W A
Sbjct: 3 KFISWNVNGIRACIKKG---FLDVLEGESPDYFAVQETKMQEGQEEILTNGYHQYWDSAK 59
Query: 101 SK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEE 159
K Y+GT +L K+ + VS S +++ +GRV+ A+F+ FYL+N Y PN+ K E
Sbjct: 60 RKGYSGTLVLSKE----EAVSTSKGIGIEEHDEEGRVVTADFKDFYLVNVYVPNS--KPE 113
Query: 160 ENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPN 218
R+ W+ +++V++ + KP+I CGDLNV+H EID+ +P
Sbjct: 114 LARLDYRQHWEDDFRDYVVKLNKEKPVIICGDLNVAHTEIDLKNP--------------- 158
Query: 219 KEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRI 278
K + PGFT ER++F +L+ G D +R+ + +K+ + WS + RI
Sbjct: 159 KTNRRNPGFTDEEREKFTELLEAG-FTDTFRYKYPDKEGAYTW-WSYRFNARKNNAGWRI 216
Query: 279 DYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
DYF+VS ++KD+I ++ L YGSDHCPV LEL
Sbjct: 217 DYFLVSNDVKDKIEDAKI------LSDVYGSDHCPVVLEL 250
>gi|358065851|ref|ZP_09152385.1| exodeoxyribonuclease [Clostridium hathewayi WAL-18680]
gi|356695714|gb|EHI57339.1| exodeoxyribonuclease [Clostridium hathewayi WAL-18680]
Length = 251
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 90/281 (32%), Positives = 145/281 (51%), Gaps = 36/281 (12%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLAD 100
K ++WN N L V + E+ N + D DV +Q L P + Y +W+ A+
Sbjct: 3 KLISWNVNGLRACVGKGFLEYFNEV---DADVFCIQESKLQAGQIDLPLEGYYQYWNYAE 59
Query: 101 SK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEE 159
K Y+GTA+ K+ +P V++ + +++ +GRVI AEF +Y++ Y PN+ K+
Sbjct: 60 KKGYSGTAMFTKE--EPVSVAYGI--GIEEHDKEGRVITAEFPEYYVVTCYTPNS--KDG 113
Query: 160 ENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPN 218
R +W+ ++ KP+I+CGDLNV+H+EID+ +P
Sbjct: 114 LARLPYRMEWEDAFLAYLKGLEEKKPVIFCGDLNVAHQEIDLKNP--------------- 158
Query: 219 KEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRI 278
K + GF+ ER +F +L G ID YR+ + +K + WS + + RI
Sbjct: 159 KTNRKNAGFSDEERGKFSDVLAAG-FIDTYRYFYPDK-TEVYSWWSYRFSARAKNAGWRI 216
Query: 279 DYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
DYF VSE LKDR+++ ++ +E++ GSDHCPV L +S
Sbjct: 217 DYFCVSEALKDRLVSADIH---MEVQ---GSDHCPVELVIS 251
>gi|219478|dbj|BAA14381.1| apurinic/apyrimidinic endonuclease [Homo sapiens]
Length = 318
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 96/320 (30%), Positives = 163/320 (50%), Gaps = 45/320 (14%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 DKEAAGEGPALYEDPPDHKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQ-------ILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVS 120
PD++ LQ L L P ++Q W + +D + Y+G LL ++C P KVS
Sbjct: 86 EEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVS 143
Query: 121 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ- 179
+ + +++ +GRVI+AEF++F L+ Y PN G + R++WD+ ++F+
Sbjct: 144 YGIGDE--EHDQEGRVIVAEFDSFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGL 199
Query: 180 CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 239
S KPL+ CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L
Sbjct: 200 ASRKPLVLCGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELL 244
Query: 240 KEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGH 299
+ L D++R L+ F W+ + + R+DYF++S L + +++
Sbjct: 245 QAVPLADSFRHLYPNTPYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSK 303
Query: 300 GIELEGFYGSDHCPVSLELS 319
+ GSDHCP++L L+
Sbjct: 304 AL------GSDHCPITLYLA 317
>gi|313895351|ref|ZP_07828908.1| exodeoxyribonuclease III [Selenomonas sp. oral taxon 137 str.
F0430]
gi|312976246|gb|EFR41704.1| exodeoxyribonuclease III [Selenomonas sp. oral taxon 137 str.
F0430]
Length = 250
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 94/287 (32%), Positives = 138/287 (48%), Gaps = 46/287 (16%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQIL-----MRALSSPPFKNYQIWW 96
++FV+WN N L +K F D D LQ L P ++ Y ++
Sbjct: 1 MRFVSWNVNGLRAALKKG---FMESFKELDADAFCLQETKMQEGQAILDLPGYEQY--FY 55
Query: 97 SLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 156
S Y+GTA+ + K +S + +++ +GRVI EF+ YL+ Y PN+
Sbjct: 56 SAEKKGYSGTAIFTR----VKPLSVARGIGIPQHDNEGRVITMEFDDLYLVTVYTPNS-- 109
Query: 157 KEEENSFQR---RRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLN 212
+N+ R R W+ + F+L+ S KP++ CGDLNV+H EID+ +P
Sbjct: 110 ---QNALARLDYRMAWEDAFRAFLLELRSKKPVVVCGDLNVAHTEIDLKNP--------- 157
Query: 213 GYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYR 272
K + GFT ER +FG +L G +D +R L+ +K + WS +
Sbjct: 158 ------KSNRRNAGFTDEERGKFGELLAAG-FVDTFRALYPDK-VGAYTWWSYLRHARET 209
Query: 273 GKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
RIDYF+VSEEL+ RI A E+ +GSDHCPVSL LS
Sbjct: 210 NAGWRIDYFLVSEELRGRIAAAEIHAD------VFGSDHCPVSLTLS 250
>gi|18375501|ref|NP_001632.2| DNA-(apurinic or apyrimidinic site) lyase [Homo sapiens]
gi|18375503|ref|NP_542379.1| DNA-(apurinic or apyrimidinic site) lyase [Homo sapiens]
gi|18375505|ref|NP_542380.1| DNA-(apurinic or apyrimidinic site) lyase [Homo sapiens]
gi|346644849|ref|NP_001231178.1| DNA-(apurinic or apyrimidinic site) lyase [Homo sapiens]
gi|113984|sp|P27695.2|APEX1_HUMAN RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; Short=APE-1; AltName: Full=REF-1;
AltName: Full=Redox factor-1; Contains: RecName:
Full=DNA-(apurinic or apyrimidinic site) lyase,
mitochondrial
gi|13399540|pdb|1E9N|A Chain A, A Second Divalent Metal Ion In The Active Site Of A New
Crystal Form Of Human ApurinicAPYRIMIDINIC ENDONUCLEASE,
Ape1, And Its Implications For The Catalytic Mechanism
gi|13399541|pdb|1E9N|B Chain B, A Second Divalent Metal Ion In The Active Site Of A New
Crystal Form Of Human ApurinicAPYRIMIDINIC ENDONUCLEASE,
Ape1, And Its Implications For The Catalytic Mechanism
gi|13399606|pdb|1HD7|A Chain A, A Second Divalent Metal Ion In The Active Site Of A New
Crystal Form Of Human ApurinicAPYRIDINIMIC ENDONUCLEASE,
Ape1, And Its Implications For The Catalytic Mechanism
gi|354459810|pdb|3U8U|A Chain A, Crystal Structure Of Human ApurinicAPYRIDINIMIC
ENDONUCLEASE, APE1 IN A New Crystal Form
gi|354459811|pdb|3U8U|B Chain B, Crystal Structure Of Human ApurinicAPYRIDINIMIC
ENDONUCLEASE, APE1 IN A New Crystal Form
gi|354459812|pdb|3U8U|C Chain C, Crystal Structure Of Human ApurinicAPYRIDINIMIC
ENDONUCLEASE, APE1 IN A New Crystal Form
gi|354459813|pdb|3U8U|D Chain D, Crystal Structure Of Human ApurinicAPYRIDINIMIC
ENDONUCLEASE, APE1 IN A New Crystal Form
gi|354459814|pdb|3U8U|E Chain E, Crystal Structure Of Human ApurinicAPYRIDINIMIC
ENDONUCLEASE, APE1 IN A New Crystal Form
gi|354459815|pdb|3U8U|F Chain F, Crystal Structure Of Human ApurinicAPYRIDINIMIC
ENDONUCLEASE, APE1 IN A New Crystal Form
gi|19339022|gb|AAL86909.1|AF488551_1 APEX nuclease (multifunctional DNA repair enzyme) [Homo sapiens]
gi|32022|emb|CAA46925.1| AP endonuclease 1 [Homo sapiens]
gi|178747|gb|AAA58372.1| apurinic/apyrimidinic endonuclease [Homo sapiens]
gi|183780|gb|AAA58629.1| apurinic/apyrimidinic endonuclease [Homo sapiens]
gi|254069|gb|AAB22977.1| Ref-1 [Homo sapiens]
gi|13436404|gb|AAH04979.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Homo sapiens]
gi|28071072|emb|CAD61917.1| unnamed protein product [Homo sapiens]
gi|54697126|gb|AAV38935.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Homo sapiens]
gi|60655677|gb|AAX32402.1| APEX nuclease 1 [synthetic construct]
gi|61358645|gb|AAX41600.1| APEX nuclease 1 [synthetic construct]
gi|63100763|gb|AAH95428.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Homo sapiens]
gi|119586867|gb|EAW66463.1| APEX nuclease (multifunctional DNA repair enzyme) 1, isoform CRA_a
[Homo sapiens]
gi|119586868|gb|EAW66464.1| APEX nuclease (multifunctional DNA repair enzyme) 1, isoform CRA_a
[Homo sapiens]
gi|119586869|gb|EAW66465.1| APEX nuclease (multifunctional DNA repair enzyme) 1, isoform CRA_a
[Homo sapiens]
gi|119586870|gb|EAW66466.1| APEX nuclease (multifunctional DNA repair enzyme) 1, isoform CRA_a
[Homo sapiens]
gi|119586871|gb|EAW66467.1| APEX nuclease (multifunctional DNA repair enzyme) 1, isoform CRA_a
[Homo sapiens]
gi|119586872|gb|EAW66468.1| APEX nuclease (multifunctional DNA repair enzyme) 1, isoform CRA_a
[Homo sapiens]
gi|158255636|dbj|BAF83789.1| unnamed protein product [Homo sapiens]
Length = 318
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 96/320 (30%), Positives = 163/320 (50%), Gaps = 45/320 (14%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 DKEAAGEGPALYEDPPDQKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQ-------ILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVS 120
PD++ LQ L L P ++Q W + +D + Y+G LL ++C P KVS
Sbjct: 86 EEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVS 143
Query: 121 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ- 179
+ + +++ +GRVI+AEF++F L+ Y PN G + R++WD+ ++F+
Sbjct: 144 YGIGDE--EHDQEGRVIVAEFDSFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGL 199
Query: 180 CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 239
S KPL+ CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L
Sbjct: 200 ASRKPLVLCGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELL 244
Query: 240 KEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGH 299
+ L D++R L+ F W+ + + R+DYF++S L + +++
Sbjct: 245 QAVPLADSFRHLYPNTPYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSK 303
Query: 300 GIELEGFYGSDHCPVSLELS 319
+ GSDHCP++L L+
Sbjct: 304 AL------GSDHCPITLYLA 317
>gi|299037|gb|AAB26054.1| APEX nuclease=major apurinic/apyrimidinic endonuclease [human,
Peptide, 317 aa]
Length = 317
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 96/320 (30%), Positives = 163/320 (50%), Gaps = 45/320 (14%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 33 DKEAAGEGPALYEDPPDHKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 84
Query: 69 TFDPDVIALQ-------ILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVS 120
PD++ LQ L L P ++Q W + +D + Y+G LL ++C P KVS
Sbjct: 85 EEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVS 142
Query: 121 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ- 179
+ + +++ +GRVI+AEF++F L+ Y PN G + R++WD+ ++F+
Sbjct: 143 YGIGDE--EHDQEGRVIVAEFDSFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGL 198
Query: 180 CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 239
S KPL+ CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L
Sbjct: 199 ASRKPLVLCGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELL 243
Query: 240 KEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGH 299
+ L D++R L+ F W+ + + R+DYF++S L + +++
Sbjct: 244 QAVPLADSFRHLYPNTPYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSK 302
Query: 300 GIELEGFYGSDHCPVSLELS 319
+ GSDHCP++L L+
Sbjct: 303 AL------GSDHCPITLYLA 316
>gi|299143331|ref|ZP_07036411.1| exodeoxyribonuclease III [Peptoniphilus sp. oral taxon 386 str.
F0131]
gi|298517816|gb|EFI41555.1| exodeoxyribonuclease III [Peptoniphilus sp. oral taxon 386 str.
F0131]
Length = 250
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 91/281 (32%), Positives = 146/281 (51%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPFK--NYQIWWSLA 99
+K V+WN N L +K + + N I + DV ALQ + + F+ Y+++++ A
Sbjct: 1 MKLVSWNVNGLRAVIKKGFVDSFNEI---NADVFALQEIKLSEGQLDFELEGYKMYYNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ + +P VS+ + +++ +GRVI AEFE FY + Y PN+ K
Sbjct: 58 QRKGYSGTAIFTR--IEPISVSYGIGME--EHDTEGRVITAEFEKFYFVTCYTPNS--KR 111
Query: 159 EENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ + ++ + KP++ CGDLNV+HEEID+++P
Sbjct: 112 GLERLEYRMVWEDVFRNYLNKLRETKPVVLCGDLNVAHEEIDLANP------------AT 159
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
N ++ GFT ER +F +LK G ID +R+ + ++ + + WS + R R
Sbjct: 160 NHKN---AGFTNEERSKFTELLKSG-YIDTFRYFYPDRKDEYSW-WSNFAKSRERNIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+VSEELK + ++ + GSDHCPV L L
Sbjct: 215 IDYFVVSEELKGNLSDAKIH------QSVMGSDHCPVELVL 249
>gi|304384068|ref|ZP_07366522.1| exodeoxyribonuclease III [Prevotella marshii DSM 16973]
gi|304334784|gb|EFM01060.1| exodeoxyribonuclease III [Prevotella marshii DSM 16973]
Length = 250
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 90/283 (31%), Positives = 140/283 (49%), Gaps = 39/283 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+KFV+WN N L V + F D D LQ + + F+ Y+ +W+ A
Sbjct: 1 MKFVSWNVNGLRACVGKS---FEESFRMLDADFFCLQETKMQEGQLNLQFEGYEAYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ + QP+ VS+ + A +E GR+I E FYL+ Y PN+ ++
Sbjct: 58 EKKGYSGTAIYTRH--QPQSVSYGMGVEAHDHE--GRIITLEMPGFYLVTVYTPNS--QD 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R +W++ +++ + K P+I CGD+NV+HEEID+ +P
Sbjct: 112 GLKRLAYRMQWEEDFLQYIKKLDAKKPVIICGDMNVAHEEIDIKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
K + GFT ER +F +L EG D +R+ + E+ +S WS + +
Sbjct: 158 -KTNRHNAGFTDEERNKFTTLLSEG-FTDTFRYKYPEQ---VRYSWWSYRFQARAKNAGW 212
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
RIDYF+VS LK +II ++ GSDHCPV +EL+
Sbjct: 213 RIDYFVVSNRLKPQIIDAKIH------TAILGSDHCPVEVELN 249
>gi|149692696|ref|XP_001505181.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like [Equus
caballus]
Length = 318
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 96/320 (30%), Positives = 162/320 (50%), Gaps = 45/320 (14%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
EKE + + P L D +T+ + K LK +WN + L +K + +++
Sbjct: 34 EKEAAGEGPVLYEDPPDQKTSPSG-----KSATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQ-------ILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVS 120
PD++ LQ L L P ++Q W + +D + Y+G LL ++C P KVS
Sbjct: 86 EEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVS 143
Query: 121 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ- 179
+ + + +++ +GRVI+AEF+ F L+ Y PN G + R++WD+ ++F+
Sbjct: 144 YGIGEE--EHDQEGRVIVAEFDAFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGL 199
Query: 180 CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 239
S KPL+ CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L
Sbjct: 200 ASRKPLVLCGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELL 244
Query: 240 KEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGH 299
+ L D++R L+ F W+ + + R+DYF++S L + +++
Sbjct: 245 QAVPLADSFRHLYPNTAYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSK 303
Query: 300 GIELEGFYGSDHCPVSLELS 319
+ GSDHCP++L L+
Sbjct: 304 AL------GSDHCPITLYLA 317
>gi|410961724|ref|XP_003987429.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase isoform 2
[Felis catus]
Length = 404
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 96/320 (30%), Positives = 163/320 (50%), Gaps = 45/320 (14%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
EKE + + P L D +T+ + K LK +WN + L +K + +++
Sbjct: 120 EKEAAGEGPVLYEDPPDQKTSPSG-----KSATLKICSWNVDGLRAWIKK---KGLDWVK 171
Query: 69 TFDPDVIALQ-------ILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVS 120
PD++ LQ L L P ++Q W + +D + Y+G LL ++C P KVS
Sbjct: 172 EEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVS 229
Query: 121 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ- 179
+ + + +++ +GRVI+AEF++F L+ Y PN G + R++WD+ ++F+
Sbjct: 230 YGIGEE--EHDQEGRVIVAEFDSFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGL 285
Query: 180 CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 239
S KPL+ CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L
Sbjct: 286 ASRKPLVLCGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELL 330
Query: 240 KEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGH 299
+ L D++R L+ F W+ + + R+DYF++S L + +++
Sbjct: 331 EAVPLADSFRHLYPNTAYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSK 389
Query: 300 GIELEGFYGSDHCPVSLELS 319
+ GSDHCP++L L+
Sbjct: 390 AL------GSDHCPITLYLA 403
>gi|395849480|ref|XP_003797352.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Otolemur
garnettii]
Length = 318
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 96/320 (30%), Positives = 162/320 (50%), Gaps = 45/320 (14%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
EKE + + P L D +T+ + K LK +WN + L +K + +++
Sbjct: 34 EKEAAGEGPVLYEDPPDKKTSPSG-----KSATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQ-------ILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVS 120
PD++ LQ L L P ++Q W + +D + Y+G LL ++C P KVS
Sbjct: 86 EEAPDILCLQETKCSENKLPTELQDLPGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVS 143
Query: 121 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ- 179
+ + + +++ +GRVI+AEF+ F L+ Y PN G + R++WD+ ++F+
Sbjct: 144 YGIGEE--EHDQEGRVIVAEFDKFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGL 199
Query: 180 CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 239
S KPL+ CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L
Sbjct: 200 TSQKPLVLCGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELL 244
Query: 240 KEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGH 299
+ L D++R L+ F W+ + + R+DYF++S L + +++
Sbjct: 245 QAVPLADSFRHLYPNTAYAYTF-WTYMMNARAKNVGWRLDYFLLSHSLLPALCDSKIRSK 303
Query: 300 GIELEGFYGSDHCPVSLELS 319
+ GSDHCP++L L+
Sbjct: 304 AL------GSDHCPITLYLA 317
>gi|373107112|ref|ZP_09521412.1| exodeoxyribonuclease III (xth) [Stomatobaculum longum]
gi|371652051|gb|EHO17477.1| exodeoxyribonuclease III (xth) [Stomatobaculum longum]
Length = 254
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 95/280 (33%), Positives = 137/280 (48%), Gaps = 36/280 (12%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLAD 100
K ++WN N L F + D D+ +Q L Y +W+ A+
Sbjct: 5 KMISWNVNGLRAAAGKT---FFDAFHELDADIFCIQESKLQEGQIELDLPGYYDYWNYAE 61
Query: 101 SK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEE 159
K Y+G A+ K+ +P VS+ L +++ +GRVI EF +Y+L Y PN+ + E
Sbjct: 62 KKGYSGVAMFTKE--KPVNVSYGL--GIPEHDKEGRVITLEFPDYYVLTCYTPNS--QNE 115
Query: 160 ENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPN 218
R +W+ ++ K PLI+CGDLNV+HEEID+ +P N
Sbjct: 116 LKRLDYRMEWEDAFFAYIKGLDQKKPLIYCGDLNVAHEEIDLKNP------------STN 163
Query: 219 KEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRI 278
+ + GFT ER++ +L G +D++R+LH E + D WS + R RI
Sbjct: 164 RRN---AGFTDEEREKMTRVLTNG-FVDSFRYLHPE-EKDAYSWWSYRMKARERNVGWRI 218
Query: 279 DYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
DYFIVSE LKDRI QG I E GSDHCPV L++
Sbjct: 219 DYFIVSERLKDRI-----QGASIHSE-ILGSDHCPVELKI 252
>gi|330843681|ref|XP_003293776.1| hypothetical protein DICPUDRAFT_9650 [Dictyostelium purpureum]
gi|325075853|gb|EGC29694.1| hypothetical protein DICPUDRAFT_9650 [Dictyostelium purpureum]
Length = 249
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 91/282 (32%), Positives = 143/282 (50%), Gaps = 42/282 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ------ILMRALSSPPFKNYQIW 95
LK ++WN + FS+++ +PD++ LQ ++ S P Y +
Sbjct: 1 LKVISWNVAGFRSVLTKG---FSDYVVKENPDILCLQETKIKPTEVQKSSIPSGYEYH-F 56
Query: 96 WSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNG 155
S + + GT LL K +P + F + K++ +GRVI AE++ FYL+NTY PN+G
Sbjct: 57 VSADQAGHHGTGLLTK--LKPLSLKFGI--GIAKHDTEGRVITAEYDDFYLVNTYIPNSG 112
Query: 156 WKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY 214
+ +N R ++WD Q+++++ KP++WCGDLNV+H EID+ +P
Sbjct: 113 SRGLKNLDYRIKEWDVDFQKYLVELDKKKPVVWCGDLNVAHTEIDLKNP----------- 161
Query: 215 VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGK 274
K + GFTI ER FG L +G ID+YR + K+ F W+ +G R K
Sbjct: 162 ----KTNTKSAGFTIQERTSFGDFLNKG-FIDSYRHYNPGKEGAFTF-WT--YMGGARAK 213
Query: 275 RM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPV 314
+ R+DYF+VS+ D I ++ GSDHCP+
Sbjct: 214 NVGWRLDYFVVSKRYIDSIKTPFIR------STVMGSDHCPI 249
>gi|340352974|ref|ZP_08675807.1| exodeoxyribonuclease III [Prevotella pallens ATCC 700821]
gi|339611994|gb|EGQ16810.1| exodeoxyribonuclease III [Prevotella pallens ATCC 700821]
Length = 250
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 91/283 (32%), Positives = 143/283 (50%), Gaps = 39/283 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+KF++WN N L V + E +F+ + D LQ + F Y+ +W+ A
Sbjct: 1 MKFISWNVNGLRACVTKGFKE--SFVE-LNADFFCLQETKMQEGQLDITFDGYESYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
D K Y+GTA+ K +P V + L+ +++ +GRVI E ETF+L+ Y PN+ ++
Sbjct: 58 DKKGYSGTAIFTKH--KPINVHYGLDID--EHDHEGRVITLEMETFFLVTCYTPNS--QD 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R KW+ Q ++ Q K P++ CGDLNV+HEEID+ +P
Sbjct: 112 GLKRLDYRMKWEDDFQAYIKQLDKKKPVVICGDLNVAHEEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
K + GFT ER + L G ID++R L+ E+ +S WS + +
Sbjct: 158 -KTNRKNAGFTDEERAKMTQFLNNG-FIDSFRTLYPEQ---ITYSWWSYRFKAREKNAGW 212
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
RIDYF++S L++++I ++ YGSDHCPV +EL+
Sbjct: 213 RIDYFLLSNRLRNQLIDAKIHTE------VYGSDHCPVEVELN 249
>gi|296214367|ref|XP_002753758.1| PREDICTED: uncharacterized protein LOC100400557 isoform 1
[Callithrix jacchus]
gi|296214369|ref|XP_002753759.1| PREDICTED: uncharacterized protein LOC100400557 isoform 2
[Callithrix jacchus]
Length = 318
Score = 127 bits (318), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 96/320 (30%), Positives = 163/320 (50%), Gaps = 45/320 (14%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 DKEAAGEGPALYEDPPDQKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQ-------ILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVS 120
PD++ LQ L L P +Q W + +D + Y+G LL ++C P KVS
Sbjct: 86 EEAPDILCLQETKCSENKLPAELQELPGLPHQYWSAPSDKEGYSGVGLLSRQC--PLKVS 143
Query: 121 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ- 179
+ + + +++ +GRVI+AEF++F L+ Y PN G + R++WD+ ++F+
Sbjct: 144 YGIGEE--EHDQEGRVIVAEFDSFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGL 199
Query: 180 CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 239
S KPL+ CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L
Sbjct: 200 ASRKPLVLCGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELL 244
Query: 240 KEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGH 299
+ L D++R L+ F W+ + + R+DYF++S L + +++
Sbjct: 245 QAVPLADSFRHLYPNTAYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSK 303
Query: 300 GIELEGFYGSDHCPVSLELS 319
+ GSDHCP++L L+
Sbjct: 304 AL------GSDHCPITLYLA 317
>gi|431795205|ref|YP_007222110.1| exodeoxyribonuclease III [Desulfitobacterium dichloroeliminans LMG
P-21439]
gi|430785431|gb|AGA70714.1| exodeoxyribonuclease III [Desulfitobacterium dichloroeliminans LMG
P-21439]
Length = 250
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 89/281 (31%), Positives = 138/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPFK--NYQIWWSLA 99
+K ++WN N + + F +F D+ LQ PF+ Y +W+ A
Sbjct: 1 MKLISWNVNGIRACLNKG---FMDFFEKEQADIFCLQETKIQADQIPFQLEGYHQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ K+ +P KV++ + K +++ +GRVI EFE FYL+ Y PN+ +
Sbjct: 58 QKKGYSGTAVFTKQ--EPLKVTYGIGKE--EHDQEGRVITLEFEGFYLVTVYTPNS--QR 111
Query: 159 EENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W++ F+ KP+I+CGDLN++H EID+ +P
Sbjct: 112 GLARLEYRMTWEEEFLSFLKNLEQAKPVIFCGDLNMAHTEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER +FG +LK+G ID +R+ + +K + WS + R
Sbjct: 158 -KTNRKNAGFSDEERAKFGELLKKG-FIDTFRYFYPDK-TEAYTWWSYMFNARANNAGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF VSE LKD++ + GSDHCPV LE+
Sbjct: 215 IDYFCVSESLKDQL------RDAVIYSEILGSDHCPVGLEI 249
>gi|357614743|gb|EHJ69244.1| ap endonuclease [Danaus plexippus]
Length = 630
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 92/270 (34%), Positives = 129/270 (47%), Gaps = 37/270 (13%)
Query: 65 NFITTFDPDVIALQILMRALSSPPFK-----NYQIWWSLADSK-YAGTALLVKKCFQPKK 118
+++ PD++ LQ AL P++ Y +W +D YAG + K
Sbjct: 390 DYLKYEKPDILCLQETKCALDKLPYEVKNIPGYHAYWLSSDKDGYAGVGIYTTKLAM--N 447
Query: 119 VSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVL 178
V + L+ L E GR+I AE+E FYL+ TY PN G K S +R KW+ +E V
Sbjct: 448 VQYGLQNEELDSE--GRIITAEYEQFYLICTYVPNAGRKLV--SLPKRLKWNDEFREHVK 503
Query: 179 QCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGA 237
KP+I CGD+NV+H EID+++P K + GFT ER
Sbjct: 504 ALDEKKPVIICGDMNVAHNEIDLTNP---------------KTNKKNAGFTEEERAGMTE 548
Query: 238 ILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQ 297
+L +G +D +R H EK +S+ N K G R+DYFIVSE L I ++
Sbjct: 549 LLGDG-FVDTFRHFHPEKVAYTFWSYMANSRAKNVG--WRLDYFIVSERLLPSICDSSIR 605
Query: 298 GHGIELEGFYGSDHCPVSLELSEASSDSEK 327
G YGSDHCP++L L S+D K
Sbjct: 606 GE------VYGSDHCPIALYLHLTSADKPK 629
>gi|229098205|ref|ZP_04229152.1| Exodeoxyribonuclease [Bacillus cereus Rock3-29]
gi|423441531|ref|ZP_17418437.1| exodeoxyribonuclease [Bacillus cereus BAG4X2-1]
gi|423464605|ref|ZP_17441373.1| exodeoxyribonuclease [Bacillus cereus BAG6O-1]
gi|423533947|ref|ZP_17510365.1| exodeoxyribonuclease [Bacillus cereus HuB2-9]
gi|228685103|gb|EEL39034.1| Exodeoxyribonuclease [Bacillus cereus Rock3-29]
gi|402418192|gb|EJV50492.1| exodeoxyribonuclease [Bacillus cereus BAG4X2-1]
gi|402420872|gb|EJV53143.1| exodeoxyribonuclease [Bacillus cereus BAG6O-1]
gi|402464166|gb|EJV95866.1| exodeoxyribonuclease [Bacillus cereus HuB2-9]
Length = 252
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 88/284 (30%), Positives = 145/284 (51%), Gaps = 39/284 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPF--KNYQIWWSLA 99
+K ++WN N L + F ++ + D+ LQ + + Y +W+ A
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKLQSGQIDLNPEGYYTYWNYA 58
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ +KK +P V++ L +++ +GRVI EFE FY++ Y PN+ K
Sbjct: 59 VKKGYSGTAIFMKK--EPLSVTYGL--GIEEHDQEGRVITLEFEDFYMITLYTPNS--KR 112
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R +W+ + ++ Q KP+++CGDLNV+H+EID+ +P
Sbjct: 113 GLERLDYRMEWEDDFRTYIKQLDEKKPVVFCGDLNVAHKEIDLKNP-------------- 158
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
K + PGF+ ER++F IL+EG +D YR L+ + + +SW +G R K +
Sbjct: 159 -KSNRKNPGFSDEEREKFTRILEEG-FVDTYRHLY--PNQEGAYSWWSYRMGA-RAKNIG 213
Query: 277 -RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
R+DYF+VSE +K +I ++ GSDHCPV L ++
Sbjct: 214 WRLDYFVVSERIKGQITDAKINSE------IMGSDHCPVELHIN 251
>gi|403289383|ref|XP_003935839.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Saimiri
boliviensis boliviensis]
gi|403289385|ref|XP_003935840.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Saimiri
boliviensis boliviensis]
Length = 318
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 96/320 (30%), Positives = 163/320 (50%), Gaps = 45/320 (14%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 DKEVAGEGPALYEDPPDQKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQ-------ILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVS 120
PD++ LQ L L P +Q W + +D + Y+G LL ++C P KVS
Sbjct: 86 EEAPDILCLQETKCSENKLPAELQELPGLPHQYWSAPSDKEGYSGVGLLSRQC--PLKVS 143
Query: 121 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ- 179
+ + + +++ +GRVI+AEF++F L+ Y PN G + R++WD+ ++F+
Sbjct: 144 YGIGEE--EHDQEGRVIVAEFDSFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGL 199
Query: 180 CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 239
S KPL+ CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L
Sbjct: 200 ASRKPLVLCGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELL 244
Query: 240 KEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGH 299
+ L D++R L+ F W+ + + R+DYF++S L + +++
Sbjct: 245 QAVPLADSFRHLYPNTAYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSK 303
Query: 300 GIELEGFYGSDHCPVSLELS 319
+ GSDHCP++L L+
Sbjct: 304 AL------GSDHCPITLYLA 317
>gi|349612033|ref|ZP_08891261.1| exodeoxyribonuclease [Lactobacillus sp. 7_1_47FAA]
gi|348609208|gb|EGY59168.1| exodeoxyribonuclease [Lactobacillus sp. 7_1_47FAA]
Length = 275
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 95/300 (31%), Positives = 139/300 (46%), Gaps = 50/300 (16%)
Query: 42 LKFVTWNANSLLLRVK------NNWPEFSNFITTFDPDVIALQILMRALSSPP------- 88
+ F++WN +SL + N N I +PDV+A+Q + P
Sbjct: 1 MLFISWNIDSLNAALTGDSDRANETRSVLNKIKKANPDVVAIQETKLRANGPTKKHCDIL 60
Query: 89 ---FKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEF 141
F++YQ W A YAGT L KK + P+ V++ L + +GR+I EF
Sbjct: 61 ADIFEDYQYVWRSSQEPARKSYAGTMFLYKKNYHPQ-VTYPLIGAPDTMDQEGRIITLEF 119
Query: 142 ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDV 200
+TFYL Y PN+G E R WD + QE++ + KP+I GD NV+H+EID+
Sbjct: 120 DTFYLTQVYTPNSG--NELKRLADREIWDTKYQEYLAKLDQNKPVIASGDYNVAHQEIDL 177
Query: 201 SHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCG 260
HPE + GFT ERK F +L G ID +R+++ D+
Sbjct: 178 KHPE---------------TNHHNAGFTDEERKGFSKLLSLG-FIDTFRYIN--GDITDV 219
Query: 261 FSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
+SW I K RIDY++VS+ L D+I +M G DHCP+ L++
Sbjct: 220 YSWWSQRIRTSKTNNAGWRIDYYLVSQRLADKIEQSKMIDTGDR------KDHCPILLKI 273
>gi|429766260|ref|ZP_19298534.1| exodeoxyribonuclease III [Clostridium celatum DSM 1785]
gi|429185240|gb|EKY26229.1| exodeoxyribonuclease III [Clostridium celatum DSM 1785]
Length = 250
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 143/281 (50%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N + V+ F +F + D+ +Q L + K Y +W+ A
Sbjct: 1 MKLISWNVNGIRACVQKG---FLDFFNEVNADIFCIQESKLQEGQINLELKGYHQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ KK +P V + L +++ +GRVI EFE F+++ Y PN+ +
Sbjct: 58 EKKGYSGTAIFTKK--EPLSVRYGL--GIEEHDKEGRVITLEFEDFFMITVYTPNS--QN 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R KW+ ++++ KP+I CGDLNV+H+EID+ +P
Sbjct: 112 ELARLDYRMKWEDDFKKYLKHLEKSKPVIVCGDLNVAHKEIDLKNP------------TT 159
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
N+++ GFT ER++ ++L +G ID +R+ + E + WS + R
Sbjct: 160 NRKN---AGFTDEEREKLTSLLNDG-FIDTFRYFYPETTGVYSW-WSYRFNARKNNAGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+VSE LKDR+ + ++ + GSDHCPV L +
Sbjct: 215 IDYFVVSESLKDRLESAKIHTEVL------GSDHCPVELTI 249
>gi|229104299|ref|ZP_04234968.1| Exodeoxyribonuclease [Bacillus cereus Rock3-28]
gi|229117223|ref|ZP_04246601.1| Exodeoxyribonuclease [Bacillus cereus Rock1-3]
gi|423378475|ref|ZP_17355759.1| exodeoxyribonuclease [Bacillus cereus BAG1O-2]
gi|423448243|ref|ZP_17425122.1| exodeoxyribonuclease [Bacillus cereus BAG5O-1]
gi|423540784|ref|ZP_17517175.1| exodeoxyribonuclease [Bacillus cereus HuB4-10]
gi|423547021|ref|ZP_17523379.1| exodeoxyribonuclease [Bacillus cereus HuB5-5]
gi|423623188|ref|ZP_17598966.1| exodeoxyribonuclease [Bacillus cereus VD148]
gi|228666123|gb|EEL21587.1| Exodeoxyribonuclease [Bacillus cereus Rock1-3]
gi|228678997|gb|EEL33205.1| Exodeoxyribonuclease [Bacillus cereus Rock3-28]
gi|401128837|gb|EJQ36520.1| exodeoxyribonuclease [Bacillus cereus BAG5O-1]
gi|401171972|gb|EJQ79193.1| exodeoxyribonuclease [Bacillus cereus HuB4-10]
gi|401178742|gb|EJQ85915.1| exodeoxyribonuclease [Bacillus cereus HuB5-5]
gi|401258965|gb|EJR65143.1| exodeoxyribonuclease [Bacillus cereus VD148]
gi|401635242|gb|EJS52998.1| exodeoxyribonuclease [Bacillus cereus BAG1O-2]
Length = 252
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 88/284 (30%), Positives = 144/284 (50%), Gaps = 39/284 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPF--KNYQIWWSLA 99
+K ++WN N L + F ++ + D+ LQ + + Y +W+ A
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKLQSGQIDLNPEGYYTYWNYA 58
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ KK +P V++ L +++ +GRVI EFE FY++ Y PN+ K
Sbjct: 59 VKKGYSGTAIFTKK--EPLSVTYGL--GIEEHDQEGRVITLEFEDFYMITLYTPNS--KR 112
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R +W+ + ++ Q KP+++CGDLNV+H+EID+ +P
Sbjct: 113 GLERLDYRMEWEDDFRTYIKQLDEKKPVVFCGDLNVAHKEIDLKNP-------------- 158
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
K + PGF+ ER++F IL+EG +D YR L+ + + +SW +G R K +
Sbjct: 159 -KSNRKNPGFSDEEREKFTRILEEG-FVDTYRHLY--PNQEGAYSWWSYRMGA-RAKNIG 213
Query: 277 -RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
R+DYF+VSE +K +I ++ GSDHCPV L ++
Sbjct: 214 WRLDYFVVSERIKGQITDAKINSE------IMGSDHCPVELHIN 251
>gi|221194898|ref|ZP_03567954.1| exodeoxyribonuclease III [Atopobium rimae ATCC 49626]
gi|221184801|gb|EEE17192.1| exodeoxyribonuclease III [Atopobium rimae ATCC 49626]
Length = 281
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 98/302 (32%), Positives = 143/302 (47%), Gaps = 37/302 (12%)
Query: 23 KKDGETTETSSEENSKKDP-LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--I 79
K D ++TS N+ KF +WN N L +K + P F+ T D D+ ALQ
Sbjct: 9 KSDTAVSQTSRSSNTADTKEYKFASWNVNGLRAVLKKD-PSFTEIFETIDADIFALQETK 67
Query: 80 LMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVIL 138
L +Y W+ A+ K Y+GTA+ ++ +P +V + E GRV
Sbjct: 68 LQEGQVDLDIPSYFQTWNYAERKGYSGTAVFSRE--EPLQVIRQIGSPVADNE--GRVCA 123
Query: 139 AEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEE 197
EF+ F+ ++ Y PN+ KE+ R WD+R ++F+ + S KPLI CGD NV+H E
Sbjct: 124 LEFDRFWFVDVYTPNS--KEQLARLDERLVWDERYRDFIAELSAQKPLITCGDFNVAHTE 181
Query: 198 IDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDM 257
ID+ +P + GF+ ER+ F +L G D +R+ H D+
Sbjct: 182 IDLKNP---------------SSNHKNAGFSDEERESFTKLLDAG-FTDTFRYRH--PDV 223
Query: 258 DCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
+S WS + RIDYF+VS IA ++ G I L YGSDHCPV L
Sbjct: 224 TGAYSWWSYRFNARKNNAGWRIDYFLVSNR-----IAQQITGAAI-LNEVYGSDHCPVEL 277
Query: 317 EL 318
+
Sbjct: 278 TI 279
>gi|146286032|sp|A1YES6.1|APEX1_GORGO RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; AltName: Full=REF-1; AltName: Full=Redox
factor-1; Contains: RecName: Full=DNA-(apurinic or
apyrimidinic site) lyase, mitochondrial
gi|120974134|gb|ABM46644.1| APEX1 [Gorilla gorilla]
Length = 318
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 98/321 (30%), Positives = 162/321 (50%), Gaps = 47/321 (14%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 DKEAAGEGPALYEDPPDQKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQ-------ILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKV 119
PD++ LQ L L P +YQ +WS K Y+G LL ++C P KV
Sbjct: 86 EEAPDILCLQETKCSENKLPAELQELPGLSYQ-YWSAPXXKEGYSGVGLLSRQC--PLKV 142
Query: 120 SFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ 179
S+ + + +++ +GRVI+AEF++F L+ Y PN G + R++WD+ + F+
Sbjct: 143 SYGIGEE--EHDQEGRVIVAEFDSFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRRFLKG 198
Query: 180 -CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAI 238
S KPL+ CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +
Sbjct: 199 LASRKPLVLCGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGEL 243
Query: 239 LKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQG 298
L+ L D++R L+ F W+ + + R+DYF++S L + +++
Sbjct: 244 LQAVPLADSFRHLYPNTPYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRS 302
Query: 299 HGIELEGFYGSDHCPVSLELS 319
+ GSDHCP++L L+
Sbjct: 303 KAL------GSDHCPITLYLA 317
>gi|302388430|ref|YP_003824252.1| exodeoxyribonuclease III [Clostridium saccharolyticum WM1]
gi|302199058|gb|ADL06629.1| exodeoxyribonuclease III [Clostridium saccharolyticum WM1]
Length = 251
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 88/278 (31%), Positives = 140/278 (50%), Gaps = 36/278 (12%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLAD 100
K ++WN N L V+ F ++ D DV +Q L Y +W+ A+
Sbjct: 3 KMISWNVNGLRACVEKG---FLDYFKEMDADVFCIQESKLQEGQIDLTLPGYHQYWNYAE 59
Query: 101 SK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEE 159
K Y+GTAL K+ +P V++ + A +++ +GRVI AE+ +Y++ Y PN+ + E
Sbjct: 60 KKGYSGTALFTKE--KPLSVAYGI--NAEEHDREGRVIAAEYPEYYVVTCYTPNS--QNE 113
Query: 160 ENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPN 218
R W+ + ++ + KP+I+CGDLNV+H+EID+ +P
Sbjct: 114 LARLPYRLTWEDAVLAYLKKLEEKKPVIFCGDLNVAHKEIDLKNP--------------- 158
Query: 219 KEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRI 278
K + GFT ER++F +L+ G ID YR+ + E++ + WS + + RI
Sbjct: 159 KTNRKNAGFTDEEREKFTVLLESG-FIDTYRYFYPEQEGIYSW-WSYRFSARKKNAGWRI 216
Query: 279 DYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
DYF VSE LKDR+ + + + GSDHCPV L
Sbjct: 217 DYFCVSESLKDRLASAAIHTEVL------GSDHCPVEL 248
>gi|402836561|ref|ZP_10885097.1| exodeoxyribonuclease III [Mogibacterium sp. CM50]
gi|402271037|gb|EJU20293.1| exodeoxyribonuclease III [Mogibacterium sp. CM50]
Length = 249
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 92/282 (32%), Positives = 138/282 (48%), Gaps = 39/282 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPF--KNYQIWWSLA 99
+KF++WN N +K F + D D LQ F + Y ++S A
Sbjct: 1 MKFISWNVNGFRAVLKKG---FEDVFKDLDADFFCLQETKMQEGQADFHPEGYHEYYSYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
D K Y+GTA+ K+ P +V++ +E K+ +GRVI E++ FYL+ Y PN+ ++
Sbjct: 58 DKKGYSGTAIFAKEA--PLRVAYGIEG---KHNDEGRVITLEYDDFYLICAYVPNS--QD 110
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R +++ ++ ++ + KP+++CGDLNV+HEEID+ +P
Sbjct: 111 ELKRIDYRMEYEDDLRAYMSKLDKVKPVVYCGDLNVAHEEIDLKNP-------------- 156
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
K + G GF+ ER + +L G D YR LH D +S WS +
Sbjct: 157 -KSNRGNAGFSDEERSKMTELLGAG-FTDTYRHLH--PDTPGVYSWWSYRFNARANNAGW 212
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYFIVS L+ +I + L YGSDHCPVSL L
Sbjct: 213 RIDYFIVSNRLETKIKEAAI------LTDVYGSDHCPVSLVL 248
>gi|336114106|ref|YP_004568873.1| exodeoxyribonuclease III [Bacillus coagulans 2-6]
gi|335367536|gb|AEH53487.1| exodeoxyribonuclease III [Bacillus coagulans 2-6]
Length = 251
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 90/281 (32%), Positives = 145/281 (51%), Gaps = 40/281 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+KFV+WN N L VK F F D+ +Q L + Y +W+ A
Sbjct: 1 MKFVSWNVNGLRACVKKG---FLAFFAETGADIFCVQETKLQEGQIALDLDGYYQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ KK +P V + + + + EP+GR++ E+E FYL+N Y PN+ +
Sbjct: 58 ERKGYSGTAVFTKK--EPLSVRYGVGEN--RTEPEGRILTLEYEDFYLVNVYTPNS--QR 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R +W+ R++ ++ KP+I CGD+NV+H+EID+ +
Sbjct: 112 DLARLGYRLEWENRMRAYLTDLDKKKPVIVCGDMNVAHQEIDLKNA-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
K + G GFT ER + +L G ID++R+ + E+ + ++W + + K R + +
Sbjct: 158 -KSNIGNSGFTAEERDKMTGLLNSG-FIDSFRYFYPER--EGAYTWW-SYMNKVRERNIG 212
Query: 277 -RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
RIDYF+VS+ L R ++G G+ E GSDHCPV L
Sbjct: 213 WRIDYFLVSKRLAGR-----LKGAGMYPE-IMGSDHCPVFL 247
>gi|323342310|ref|ZP_08082542.1| exodeoxyribonuclease III [Erysipelothrix rhusiopathiae ATCC 19414]
gi|322463422|gb|EFY08616.1| exodeoxyribonuclease III [Erysipelothrix rhusiopathiae ATCC 19414]
Length = 252
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 91/283 (32%), Positives = 152/283 (53%), Gaps = 38/283 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ-ILMRA--LSSPPFKNYQIWWSL 98
+K ++WN N L +K +F D DV+ LQ M+A L P + Y +++
Sbjct: 2 MKLISWNVNGLRAVMKK---DFEGIFEAMDTDVLCLQETKMQAGQLDYDP-EGYYAYYNY 57
Query: 99 ADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWK 157
A+ K Y+GTA+ + +P V++ +++ ++ +GRVI E++ F+L+ Y PN+ +
Sbjct: 58 AEKKGYSGTAVYTR--IKPLNVTYGIQED--EHNTEGRVITCEYDDFFLVCVYTPNS--Q 111
Query: 158 EEENSFQRRRKWDKRIQEFV-LQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVP 216
E R +W+ +E++ + KP++ CGDLNV+H+EID+ +P +A + N
Sbjct: 112 PELKRIDYRMQWEDDFREYLKMLDETKPVVLCGDLNVAHKEIDLKNP---SANRKN---- 164
Query: 217 PNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM 276
PGF+ ER++F +L G ID++R LH +D WS + R
Sbjct: 165 --------PGFSDQEREQFTNLLDAG-FIDSFRELHPNA-IDRYSWWSYRANARSRNTGW 214
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
RIDYF+VSE L++ I A ++ L+ GSDHCPV ++L+
Sbjct: 215 RIDYFVVSERLRNAIEAADI------LDQVLGSDHCPVMIKLN 251
>gi|154484298|ref|ZP_02026746.1| hypothetical protein EUBVEN_02011 [Eubacterium ventriosum ATCC
27560]
gi|149734775|gb|EDM50692.1| exodeoxyribonuclease III [Eubacterium ventriosum ATCC 27560]
Length = 251
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 88/283 (31%), Positives = 143/283 (50%), Gaps = 38/283 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N + V F +F D D+ +Q + Y +W+ A
Sbjct: 1 MKLISWNVNGIRACVTKG---FMDFFNEIDADIFCIQESKMQEGQLELEMPGYYQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ KK +P V + + +++ +GRVI EFE FY++ Y PN+ +
Sbjct: 58 EKKGYSGTAIFTKK--EPMDVKYGI--GIEEHDHEGRVITLEFEDFYMVTCYTPNS--QN 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R +W+ + ++ + KP++ CGDLNV+H+EID+ +P
Sbjct: 112 ELKRLDYRMQWEDDFKAYLKKLEESKPVVLCGDLNVAHKEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
K + GFT ER++ +L +G ID +R+ + D++ +S WS + +
Sbjct: 158 -KTNRKNAGFTDEEREKMTKLLDDG-FIDTFRYFY--PDLEGKYSWWSYRFKAREKNAGW 213
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
RIDYFIVSE LKD+ ++G I E GSDHCP+ L+L+
Sbjct: 214 RIDYFIVSEALKDK-----LEGADIHTE-ILGSDHCPIELDLN 250
>gi|66817330|ref|XP_642518.1| hypothetical protein DDB_G0277701 [Dictyostelium discoideum AX4]
gi|161784257|sp|P51173.2|APEA_DICDI RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=Class II apurinic/apyrimidinic(AP)-endonuclease
gi|60470608|gb|EAL68586.1| hypothetical protein DDB_G0277701 [Dictyostelium discoideum AX4]
Length = 361
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 89/291 (30%), Positives = 145/291 (49%), Gaps = 39/291 (13%)
Query: 34 EENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQIL------MRALSSP 87
E +++ +K ++WN + F+ ++ +PDV+ LQ ++ P
Sbjct: 97 EPKVEENQMKIISWNVAGFKSVLSKG---FTEYVEKENPDVLCLQETKINPSNIKKDQMP 153
Query: 88 PFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYL 146
K Y+ + AD K + GT +L KK +P ++F + K++ +GRVI E++ FY+
Sbjct: 154 --KGYEYHFIEADQKGHHGTGVLTKK--KPNAITFGI--GIAKHDNEGRVITLEYDQFYI 207
Query: 147 LNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEF 205
+NTY PN G + + R ++WD Q ++ + + KP+IWCGDLNV+H EID+ +P
Sbjct: 208 VNTYIPNAGTRGLQRLDYRIKEWDVDFQAYLEKLNATKPIIWCGDLNVAHTEIDLKNP-- 265
Query: 206 FAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSG 265
K + GFTI ER F L++G +D+YR + K+ F WS
Sbjct: 266 -------------KTNKKSAGFTIEERTSFSNFLEKG-YVDSYRHFNPGKEGSYTF-WSY 310
Query: 266 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
G+ + R+DYF+VS+ L D I + GSDHCP+ +
Sbjct: 311 LGGGRSKNVGWRLDYFVVSKRLMDSIKISPFHRTSV-----MGSDHCPIGV 356
>gi|401564907|ref|ZP_10805765.1| exodeoxyribonuclease III [Selenomonas sp. FOBRC6]
gi|400188269|gb|EJO22440.1| exodeoxyribonuclease III [Selenomonas sp. FOBRC6]
Length = 250
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 93/284 (32%), Positives = 135/284 (47%), Gaps = 42/284 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQIL-----MRALSSPPFKNYQIWW 96
++FV+WN N L +K F D D LQ L P ++ Y ++
Sbjct: 1 MRFVSWNVNGLRAALKKG---FMESFKELDADAFCLQETKMQEGQAILDLPGYEQY--FY 55
Query: 97 SLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 156
S Y+GTA+ + +P VS+ + +++ +GRVI EFE YL+ Y PN+
Sbjct: 56 SAEKKGYSGTAIFTR--LKPLSVSYGIGIE--EHDNEGRVITMEFEDVYLVTVYTPNS-- 109
Query: 157 KEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 215
K R W+ + F+L K P++ CGDLNV+H EID+ +P
Sbjct: 110 KNGLLRLDYRMVWEDAFRAFLLDLRAKKPVVVCGDLNVAHTEIDLKNP------------ 157
Query: 216 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGK 274
K + GFT ER +F +L G +D +R L+ D+ ++ WS +
Sbjct: 158 ---KSNRRNAGFTDEERGKFTELLAAG-FVDTFRALY--PDLTGAYTWWSYLRHARETNA 211
Query: 275 RMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF+VSEEL+DRI A E+ +GSDHCPVSL L
Sbjct: 212 GWRIDYFLVSEELRDRIAAAEIHAD------IFGSDHCPVSLTL 249
>gi|404485198|ref|ZP_11020397.1| exodeoxyribonuclease III (xth) [Barnesiella intestinihominis YIT
11860]
gi|404338985|gb|EJZ65428.1| exodeoxyribonuclease III (xth) [Barnesiella intestinihominis YIT
11860]
Length = 252
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 88/283 (31%), Positives = 141/283 (49%), Gaps = 40/283 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
LK ++WN N L F++ D D LQ + F YQ +W+ A
Sbjct: 2 LKLISWNVNGLRACYDKG---FTDIFRQLDADFFCLQETKMQAGQLDLQFDGYQSYWNYA 58
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ + QP VS+ +++T +++ +GR+I E E F+L+N Y PN+ +E
Sbjct: 59 EKKGYSGTAVFTR--LQPISVSYGMDRT--EHDREGRIITLEMEDFFLVNVYTPNS--QE 112
Query: 159 EENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ F+ Q + KP+I CGDLNV+H+EID+ +P
Sbjct: 113 GLKRLEYRMTWEDDFLHFLKQLKTQKPVIVCGDLNVAHQEIDLKNP-------------- 158
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLH-KEKDMDCGFS-WSGNPIGKYRGKR 275
K + GFT ER +F +L G D +R+ + +KD+ +S WS + +
Sbjct: 159 -KTNRKNAGFTDEERYKFTQLLSAG-FTDTFRYFYPNQKDI---YSWWSYRFKAREKNAG 213
Query: 276 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF+ S L +++ + ++ +GSDHCPV LE+
Sbjct: 214 WRIDYFLASASLNEKLCSAKIHTE------IFGSDHCPVELEI 250
>gi|258645453|ref|ZP_05732922.1| exodeoxyribonuclease III [Dialister invisus DSM 15470]
gi|260402804|gb|EEW96351.1| exodeoxyribonuclease III [Dialister invisus DSM 15470]
Length = 254
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 94/283 (33%), Positives = 139/283 (49%), Gaps = 40/283 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQIL-----MRALSSPPFKNYQIWW 96
LK+++WN N L +K F D D LQ L P + YQ W
Sbjct: 4 LKYISWNVNGLRACMKKG---FMQSFKELDADCFCLQETKLQPDQIELDLPGY--YQYWN 58
Query: 97 SLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 156
S Y+GTAL K +P V++ + +++ +GRVI A+F L+ Y PN+
Sbjct: 59 SAVKKGYSGTALFTK--IKPLSVTYGIGME--EHDQEGRVITADFNDHCLVTCYTPNS-- 112
Query: 157 KEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 215
+ R KW+ ++++L S K P+I CGDLNV+HEEID+++P A+ +N
Sbjct: 113 QRGLARLTYRMKWEDDFKKYLLDLSKKKPVILCGDLNVAHEEIDLANP---ASNHMNA-- 167
Query: 216 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 275
GFT ER + +L +G D++R+LH++K D WS + R
Sbjct: 168 ----------GFTDDERNKMTELLSDG-FTDSFRYLHQDKK-DAYSWWSYFAKSRERNIG 215
Query: 276 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF+VS+ L+ RI A E+ GSDHCPV L++
Sbjct: 216 WRIDYFLVSDILQPRIKAAEIHS------SILGSDHCPVELDI 252
>gi|229061336|ref|ZP_04198683.1| Exodeoxyribonuclease [Bacillus cereus AH603]
gi|423511766|ref|ZP_17488297.1| exodeoxyribonuclease [Bacillus cereus HuA2-1]
gi|228717951|gb|EEL69596.1| Exodeoxyribonuclease [Bacillus cereus AH603]
gi|402450027|gb|EJV81861.1| exodeoxyribonuclease [Bacillus cereus HuA2-1]
Length = 252
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 86/283 (30%), Positives = 145/283 (51%), Gaps = 39/283 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPF--KNYQIWWSLA 99
+K ++WN N L + F ++ + D+ LQ + + Y +W+ A
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKLQSGQIDLNPEGYYTYWNYA 58
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ KK +P V++ L +++ +GRVI EF+ FY++ Y PN+ K
Sbjct: 59 VKKGYSGTAIFTKK--EPISVTYGL--GIEEHDQEGRVITLEFDDFYMITLYTPNS--KR 112
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R +W+ + ++ + KP+I+CGDLNV+H+E+D+ +P
Sbjct: 113 GLERLDYRMEWEDDFRAYIKRLDEKKPVIFCGDLNVAHKEVDLKNP-------------- 158
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
K + PGF+ ER++F +L+ G ID YR+L+ D + +SW +G R K +
Sbjct: 159 -KSNRKNPGFSDEEREKFTCVLEAG-FIDTYRYLY--PDQEGAYSWWSYRMGA-RAKNIG 213
Query: 277 -RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
R+DYF++SE L+ +II ++ + GSDHCPV L +
Sbjct: 214 WRLDYFVISERLEHKIIDAKINSEVM------GSDHCPVELHI 250
>gi|260584873|ref|ZP_05852618.1| exodeoxyribonuclease III [Granulicatella elegans ATCC 700633]
gi|260157530|gb|EEW92601.1| exodeoxyribonuclease III [Granulicatella elegans ATCC 700633]
Length = 253
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 91/286 (31%), Positives = 140/286 (48%), Gaps = 43/286 (15%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPP-------FKNYQI 94
+K TWN N + R N ++ PD++ LQ + P F Y
Sbjct: 1 MKLTTWNVNGI--RSVLNKGALQEYVLEAQPDILCLQ---ETKAQPEQVDLGMEFAGYHA 55
Query: 95 WWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPN 153
+W+ A K Y+GTA+ K+ +P V + L +++ +GRVI AE+ +YL+ Y PN
Sbjct: 56 YWNSAVKKGYSGTAIFTKE--EPISVQYGL--GIEEHDQEGRVITAEYADYYLVTVYTPN 111
Query: 154 NGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLN 212
K + R+ W+ F+ + KP+I+CGDLNV+H+EID+++P
Sbjct: 112 A--KRDLTRLSYRQVWEDDFLAFIKKLEETKPVIFCGDLNVAHKEIDLANP--------- 160
Query: 213 GYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYR 272
K + GFT ER++F I++ G L+DA+RF + E + WS + R
Sbjct: 161 ------KTNTKNAGFTKEEREKFDQIVENG-LVDAFRFRYPEA-VGAYTWWSYMGGARAR 212
Query: 273 GKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF+VSE L RI +++ GSDHCPV +E+
Sbjct: 213 NIGWRIDYFVVSEVLTSRIQEVKIRAD------VTGSDHCPVEMEI 252
>gi|375342925|gb|AFA54864.1| exodeoxyribonuclease III [uncultured Eggerthella sp. SMG5]
Length = 261
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 139/291 (47%), Gaps = 46/291 (15%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
++ V+WN N L +K F + D DV ALQ L Y +WS A
Sbjct: 1 MRLVSWNVNGLRAVMKKG---FMDAFHELDADVFALQETKLQEGQIEMDLPGYHQFWSYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K+ +P +V + L E GRV++ EFE ++L+N Y PN +
Sbjct: 58 ERKGYSGTAVFCKE--EPLRVIHEVGVPELDTE--GRVVICEFEQYWLVNVYTPNA--QS 111
Query: 159 EENSFQRRRKWDKR-------IQEFVL----QCSGKPLIWCGDLNVSHEEIDVSHPEFFA 207
E R WD R ++E VL + KP++ CGD NV+H+EID+ +P
Sbjct: 112 ELARLDHRMAWDDRFRDICKGLEEGVLPDGQAGNAKPVVMCGDFNVAHQEIDLKNP---- 167
Query: 208 AAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNP 267
+ + G PGF+ ER +F +L G ID +R+L+ + + WS
Sbjct: 168 -----------RSNRGNPGFSDEERAKFTCLLDAG-FIDTFRYLNPATEGAYSW-WSYRF 214
Query: 268 IGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
+ RIDYF+VSE L++++ + GSDHCPVS+EL
Sbjct: 215 HARANNAGWRIDYFLVSEALREKVQMANIYSE------IMGSDHCPVSVEL 259
>gi|336396024|ref|ZP_08577423.1| exonuclease III [Lactobacillus farciminis KCTC 3681]
Length = 253
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 94/288 (32%), Positives = 147/288 (51%), Gaps = 49/288 (17%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTF---DPDVIALQ-ILMRA----LSSPPFKNYQ 93
+K ++WN N L VK +F+TTF + DV ++Q M+A L P + Y
Sbjct: 1 MKLISWNVNGLRAVVK------KDFVTTFQQLNADVFSIQETKMQAGQLDLDLPGYHQY- 53
Query: 94 IWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPN 153
++ Y+GTA+ K K +E+ ++ +GR I EF +YL+N+Y PN
Sbjct: 54 -FFYAKKKGYSGTAVFSKAEPISVKQGLGIEE----FDDEGRTITLEFPDYYLINSYTPN 108
Query: 154 NGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLN 212
+ K + + R ++D ++E++LQ S KP+I CGDLNV+HEEID+ +P
Sbjct: 109 SQPKLKRVDY--RMRYDDVLREYMLQLSADKPVILCGDLNVAHEEIDLKNP--------- 157
Query: 213 GYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKY 271
K + PGF+ ER +F +L G ID++R LH + + +S WS +
Sbjct: 158 ------KTNHKNPGFSDQERDKFSELLDSG-FIDSFRSLHPQ---EIKYSWWSYRFNARK 207
Query: 272 RGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
RIDYF+VS+ + I ++ L YGSDHCP+ L+L+
Sbjct: 208 NNAGWRIDYFVVSKNGQQLIQDADI------LTDIYGSDHCPIELDLN 249
>gi|315917146|ref|ZP_07913386.1| exodeoxyribonuclease III [Fusobacterium gonidiaformans ATCC 25563]
gi|313691021|gb|EFS27856.1| exodeoxyribonuclease III [Fusobacterium gonidiaformans ATCC 25563]
Length = 250
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 90/281 (32%), Positives = 140/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPF--KNYQIWWSLA 99
+K ++WN N + +K F + D D+ LQ + K Y +W+ A
Sbjct: 1 MKLISWNVNGIRACLKKG---FMEYFEAQDADIFCLQETKCSAGQVELDLKGYHQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ KK +P VS+ L +++ +GRVI EFE FY++ Y PN+ K
Sbjct: 58 VKKGYSGTAIFTKK--EPISVSYGL--GIEEHDQEGRVITLEFEDFYMVTVYTPNS--KN 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R W+ + ++ + + KP++ CGD+NV+HEEID+ +P
Sbjct: 112 ELERLDYRMVWEDEFRSYLAKLNEAKPVVVCGDMNVAHEEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GFT ER +F +LK G D++R+L+ ++ + WS + R
Sbjct: 158 -KTNRRNAGFTDEERSKFTELLKAG-FTDSFRYLYPDR-LHAYSWWSYRANARKNNTGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+VS + K++I E+ E E GSDHCPV+L L
Sbjct: 215 IDYFVVSNDWKEQIQEAEIHA---EQE---GSDHCPVALYL 249
>gi|229168476|ref|ZP_04296199.1| Exodeoxyribonuclease [Bacillus cereus AH621]
gi|423592321|ref|ZP_17568352.1| exodeoxyribonuclease [Bacillus cereus VD048]
gi|228614882|gb|EEK71984.1| Exodeoxyribonuclease [Bacillus cereus AH621]
gi|401230563|gb|EJR37070.1| exodeoxyribonuclease [Bacillus cereus VD048]
Length = 252
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 86/284 (30%), Positives = 145/284 (51%), Gaps = 39/284 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPF--KNYQIWWSLA 99
+K ++WN N L + F ++ + D+ LQ + + Y +W+ A
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKLQSGQIDLNPEGYYTYWNYA 58
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ KK +P V++ L +++ +GRVI EF+ FY++ Y PN+ K
Sbjct: 59 VKKGYSGTAIFTKK--EPISVTYGL--GIEEHDQEGRVITLEFDDFYMITLYTPNS--KR 112
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R +W+ + ++ + KP+I+CGDLNV+H+E+D+ +P
Sbjct: 113 GLERLDYRMEWEDDFRAYIKRLDEKKPVIFCGDLNVAHKEVDLKNP-------------- 158
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
K + PGF+ ER++F +L+ G ID YR+L+ D + +SW +G R K +
Sbjct: 159 -KSNRKNPGFSDEEREKFTCVLEAG-FIDTYRYLY--PDQEGAYSWWSYRMGA-RAKNIG 213
Query: 277 -RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
R+DYF++SE LK +I ++ + GSDHCPV L ++
Sbjct: 214 WRLDYFVISERLKHKITDAKINSEVM------GSDHCPVELHIN 251
>gi|166030570|ref|ZP_02233399.1| hypothetical protein DORFOR_00233 [Dorea formicigenerans ATCC
27755]
gi|346308967|ref|ZP_08851071.1| exodeoxyribonuclease [Dorea formicigenerans 4_6_53AFAA]
gi|166029572|gb|EDR48329.1| exodeoxyribonuclease III [Dorea formicigenerans ATCC 27755]
gi|345901516|gb|EGX71315.1| exodeoxyribonuclease [Dorea formicigenerans 4_6_53AFAA]
Length = 250
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 90/284 (31%), Positives = 139/284 (48%), Gaps = 42/284 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQIL-----MRALSSPPFKNYQIWW 96
+KF++WN N + F +F D D+ +Q L +P + Y W
Sbjct: 1 MKFISWNVNGIRACAGKG---FMDFFQETDADIFCIQETKMQEGQLELDTPGYHQY---W 54
Query: 97 SLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNG 155
+ A K Y+GTA+ K+ +P VS+ L +++ +GRVI EFE FY + Y PN+
Sbjct: 55 NYAKKKGYSGTAIFTKQ--EPISVSYGL--GIEEHDQEGRVITLEFEDFYFITVYTPNS- 109
Query: 156 WKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY 214
+ E R KW++ ++ + KP+I+CGDLNV+H EID+ +P
Sbjct: 110 -QSELARLDYRMKWEEDFLTYLKKLEETKPVIFCGDLNVAHTEIDLKNP----------- 157
Query: 215 VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGK 274
K + GFT ER++F +L G +D +R+ + E+ + WS + +
Sbjct: 158 ----KTNRKNAGFTDEERQKFTELLNAG-FVDTFRYFYPEQTGIYSW-WSYRFSARAKNA 211
Query: 275 RMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF VSE LKDR+ ++ L GSDHCPV L++
Sbjct: 212 GWRIDYFCVSESLKDRLEDAKI------LTDIMGSDHCPVELDI 249
>gi|294499447|ref|YP_003563147.1| exodeoxyribonuclease III [Bacillus megaterium QM B1551]
gi|294349384|gb|ADE69713.1| exodeoxyribonuclease III [Bacillus megaterium QM B1551]
Length = 253
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 91/284 (32%), Positives = 148/284 (52%), Gaps = 41/284 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N + V+ F ++ + DV +Q L + Y +W+ A
Sbjct: 1 MKLISWNVNGIRACVRKG---FLDYFQEVNADVFCIQETKLQEGQIDLQLEGYYQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ K+ +P VS+ + K + E +GR+I EFE Y++N Y PN+ K
Sbjct: 58 VKKGYSGTAVFTKQ--KPLSVSYGVGKES---EDEGRIITLEFEQCYVVNVYTPNS--KR 110
Query: 159 EENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ + R +W+ + ++ + S K +I CGDLNV+H EID+ +P+ P
Sbjct: 111 DLARLEERLQWEDDLLVYLKKLNSRKAVILCGDLNVAHAEIDLRNPK------------P 158
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
N+ G GFTI ER + +L G +D +R+L+ + + ++W + + K R + +
Sbjct: 159 NR---GNSGFTIEERGKMTTLLASG-FLDTFRYLYPNQ--EGAYTW-WSYMNKVRERNIG 211
Query: 277 -RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
RIDYFIVSE +K+ I + H + GSDHCPV LEL+
Sbjct: 212 WRIDYFIVSERMKNVIQESAIHPHVM------GSDHCPVMLELN 249
>gi|331085596|ref|ZP_08334680.1| exodeoxyribonuclease [Lachnospiraceae bacterium 9_1_43BFAA]
gi|330407483|gb|EGG86985.1| exodeoxyribonuclease [Lachnospiraceae bacterium 9_1_43BFAA]
Length = 250
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 140/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+KF++WN N + V+ F +F D D+ +Q + + Y +W+ A
Sbjct: 1 MKFISWNVNGIRACVQKG---FLDFFKEADADIFCIQESKMQEGQLKLELEGYHQFWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K+ +P V++ + +++ +GRVI EFE FY + Y PN+ +
Sbjct: 58 ERKGYSGTAIFTKQ--EPLSVAYGIGME--EHDKEGRVITLEFEEFYFVTVYTPNS--QN 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R +W+ +++ + K P+I+CGDLNV+H EID+ +P
Sbjct: 112 ELARLDYRMQWETEFLKYLKKLEAKKPVIFCGDLNVAHREIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GFT ER +F +L G ID +R+ + E++ + WS + + R
Sbjct: 158 -KTNQKNAGFTDEERGKFTELLSAG-FIDTFRYFYPEQEGIYSW-WSYRFSARAKNAGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF VSE LKDR+ ++ L GSDHCPV L+
Sbjct: 215 IDYFCVSECLKDRLRDAKI------LTDVMGSDHCPVELDF 249
>gi|229134542|ref|ZP_04263353.1| Exodeoxyribonuclease [Bacillus cereus BDRD-ST196]
gi|228648935|gb|EEL04959.1| Exodeoxyribonuclease [Bacillus cereus BDRD-ST196]
Length = 252
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 86/284 (30%), Positives = 144/284 (50%), Gaps = 39/284 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPF--KNYQIWWSLA 99
+K ++WN N L + F ++ + D+ LQ + + Y +W+ A
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKLQSGQIDLNPEGYYTYWNYA 58
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ KK +P V++ L +++ +GRVI EF+ FY++ Y PN+ K
Sbjct: 59 VKKGYSGTAIFTKK--EPISVTYGL--GIEEHDQEGRVITLEFDDFYMITLYTPNS--KR 112
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R +W+ + ++ + KP+I+CGDLNV+H+E+D+ +P
Sbjct: 113 GLERLDYRMEWEDDFRAYIKRLDEKKPVIFCGDLNVAHKEVDLKNP-------------- 158
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
K + PGF+ ER++F +L+ G ID YR+L+ D + +SW +G R K +
Sbjct: 159 -KSNRKNPGFSDEEREKFTCVLEAG-FIDTYRYLY--PDQEGAYSWWSYRMGA-RAKNIG 213
Query: 277 -RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
R+DYF++SE LK +I ++ GSDHCPV L ++
Sbjct: 214 WRLDYFVISERLKHKITDAKINSE------IMGSDHCPVELHIN 251
>gi|384891873|ref|YP_005766006.1| Exo deoxyribonuclease III [Helicobacter pylori 908]
gi|385224548|ref|YP_005784474.1| Exodeoxyribonuclease III [Helicobacter pylori 2017]
gi|385232401|ref|YP_005792320.1| Exodeoxyribonuclease III [Helicobacter pylori 2018]
gi|307638182|gb|ADN80632.1| Exo deoxyribonuclease III [Helicobacter pylori 908]
gi|325996778|gb|ADZ52183.1| Exodeoxyribonuclease III [Helicobacter pylori 2018]
gi|325998370|gb|ADZ50578.1| Exodeoxyribonuclease III [Helicobacter pylori 2017]
Length = 250
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 91/282 (32%), Positives = 142/282 (50%), Gaps = 38/282 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ ++ +++ +GRVI EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGIDME--EHDKEGRVITCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEF--VLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVP 216
+ R W+ ++F VL+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEMEFKKFLKVLELK-KPVIVCGDLNVAHNEIDLENP------------- 157
Query: 217 PNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM 276
K + GF+ ERK+F +L G ID +R+ + K+ + WS + +
Sbjct: 158 --KTNRKNAGFSDEERKKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKDIGW 213
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 214 RIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|187933475|ref|YP_001885926.1| exodeoxyribonuclease III [Clostridium botulinum B str. Eklund 17B]
gi|187721628|gb|ACD22849.1| exodeoxyribonuclease III [Clostridium botulinum B str. Eklund 17B]
Length = 251
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 88/278 (31%), Positives = 144/278 (51%), Gaps = 36/278 (12%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLAD 100
K ++WN N L VK F + + + D+ +Q L + Y +W+ A+
Sbjct: 3 KLISWNVNGLRACVKKG---FIDILKESNADIFCVQESKLQEGQIDLNLEGYYDYWNYAE 59
Query: 101 SK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEE 159
K Y+GTA+ K+ K ++ SL +++ +GRV+ EFE FYL+N Y PN+ +++
Sbjct: 60 KKGYSGTAVFSKE----KPLNISLGIGIEEHDKEGRVLTLEFEEFYLVNVYTPNS--QQK 113
Query: 160 ENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPN 218
R W+ + ++ + + KP+I CGDLNV+H+EID+ +P
Sbjct: 114 LARIDYRMAWENDFRSYLNELNKAKPVIVCGDLNVAHKEIDLKNP--------------- 158
Query: 219 KEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRI 278
K + GF+ ER++FG +LK G ID YR+ + +K+ + WS + RI
Sbjct: 159 KNNRNNAGFSDEEREKFGELLKSG-FIDTYRYFYPDKEGAYSW-WSYRFNARANNAGWRI 216
Query: 279 DYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
DYF+VS++ +DR++ ++ IE GSDHCPV L
Sbjct: 217 DYFLVSKDFEDRLVDAKIHTQ-IE-----GSDHCPVEL 248
>gi|309806468|ref|ZP_07700473.1| exodeoxyribonuclease III [Lactobacillus iners LactinV 03V1-b]
gi|308167141|gb|EFO69315.1| exodeoxyribonuclease III [Lactobacillus iners LactinV 03V1-b]
Length = 275
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 95/300 (31%), Positives = 139/300 (46%), Gaps = 50/300 (16%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFS------NFITTFDPDVIALQILMRALSSPP------- 88
+ F++WN +SL + + N I +PDV+A+Q + P
Sbjct: 1 MLFISWNIDSLNAALTGDSDRAHETRSVLNKIKEANPDVVAIQETKLRANGPTKKHCDIL 60
Query: 89 ---FKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEF 141
F++YQ W A YAGT L KK + P+ VS+ L + +GR+I EF
Sbjct: 61 ADIFEDYQYVWRSSQEPARKSYAGTMFLYKKNYHPQ-VSYPLIGAPDTMDQEGRIITLEF 119
Query: 142 ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDV 200
+TFYL Y PN+G E R WD + QE++ + KP+I GD NV+H+EID+
Sbjct: 120 DTFYLTQVYTPNSG--NELKRLADREIWDTKYQEYLAKLDQNKPVIASGDYNVAHQEIDL 177
Query: 201 SHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCG 260
HPE + GFT ERK F +L G ID +R+++ D+
Sbjct: 178 KHPE---------------TNHHNAGFTDEERKGFSKLLSLG-FIDTFRYIN--GDITDV 219
Query: 261 FSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
+SW I K RIDY++VS+ L D+I +M G DHCP+ L++
Sbjct: 220 YSWWSQRIRTSKTNNAGWRIDYYLVSQRLADKIEQSKMIDTGDR------KDHCPILLKI 273
>gi|317058758|ref|ZP_07923243.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_5R]
gi|313684434|gb|EFS21269.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_5R]
Length = 250
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 90/281 (32%), Positives = 140/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPF--KNYQIWWSLA 99
+K ++WN N + +K F + D D+ LQ + K Y +W+ A
Sbjct: 1 MKLISWNVNGIRACLKKG---FMEYFEAQDADIFCLQETKCSAGQVELDLKGYHQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ KK +P VS+ L +++ +GRVI EFE FY++ Y PN+ K
Sbjct: 58 VKKGYSGTAIFTKK--EPISVSYGL--GIEEHDQEGRVITLEFEDFYMVTVYTPNS--KN 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R W+ + ++ + + KP++ CGD+NV+HEEID+ +P
Sbjct: 112 ELERLDYRMIWEDEFRSYLAKLNEAKPVVVCGDMNVAHEEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GFT ER +F +LK G D++R+L+ ++ + WS + R
Sbjct: 158 -KTNRRNAGFTDEERTKFTELLKAG-FTDSFRYLYPDR-LHAYSWWSYRANARKNNTGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+VS + K++I E+ E E GSDHCPV+L L
Sbjct: 215 IDYFVVSNDWKEQIQEAEIHA---EQE---GSDHCPVALYL 249
>gi|336066887|ref|YP_004561745.1| exodeoxyribonuclease III [Erysipelothrix rhusiopathiae str.
Fujisawa]
gi|334296833|dbj|BAK32704.1| exodeoxyribonuclease III [Erysipelothrix rhusiopathiae str.
Fujisawa]
Length = 251
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 91/283 (32%), Positives = 152/283 (53%), Gaps = 38/283 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ-ILMRA--LSSPPFKNYQIWWSL 98
+K ++WN N L +K +F D DV+ LQ M+A L P + Y +++
Sbjct: 1 MKLISWNVNGLRAVMKK---DFEGIFEAMDTDVLCLQETKMQAGQLDYDP-EGYYAYYNY 56
Query: 99 ADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWK 157
A+ K Y+GTA+ + +P V++ +++ ++ +GRVI E++ F+L+ Y PN+ +
Sbjct: 57 AEKKGYSGTAVYTR--IKPLNVTYGIQED--EHNTEGRVITCEYDDFFLVCVYTPNS--Q 110
Query: 158 EEENSFQRRRKWDKRIQEFV-LQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVP 216
E R +W+ +E++ + KP++ CGDLNV+H+EID+ +P +A + N
Sbjct: 111 PELKRIDYRMQWEDDFREYLKMLDETKPVVLCGDLNVAHKEIDLKNP---SANRKN---- 163
Query: 217 PNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM 276
PGF+ ER++F +L G ID++R LH +D WS + R
Sbjct: 164 --------PGFSDQEREQFTNLLDAG-FIDSFRELHPNA-IDRYSWWSYRANARSRNIGW 213
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
RIDYF+VSE L++ I A ++ L+ GSDHCPV ++L+
Sbjct: 214 RIDYFVVSERLRNAIEAADI------LDQVLGSDHCPVMIKLN 250
>gi|366053865|ref|ZP_09451587.1| exodeoxyribonuclease III [Lactobacillus suebicus KCTC 3549]
Length = 256
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 89/280 (31%), Positives = 134/280 (47%), Gaps = 37/280 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPFK---NYQIWWSL 98
+KF++WN N L V + F + D D +Q L K NY +W+
Sbjct: 1 MKFISWNVNGLRAAVTHG---FMDTFNQLDADFFCVQETKLQLGQIDLKLPDNYYQYWNY 57
Query: 99 ADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWK 157
AD K Y+GTA+ K K ++ SL +++ +GRVI E+ +FYL+ Y PN+G +
Sbjct: 58 ADKKGYSGTAIFTKH----KPLNASLGIGIDEFDHEGRVITLEYPSFYLITCYTPNSGQQ 113
Query: 158 EEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVP 216
+ F R+ W+K +++ Q S K +I+CGDLNV+HE ID+ +P
Sbjct: 114 LKRLDF--RQNWNKAFLDYINQLSAKKDVIFCGDLNVAHETIDLKNP------------- 158
Query: 217 PNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM 276
+ GFT ER F +L E +D YR + E + WS + R
Sbjct: 159 --SSNHHAAGFTDEERNDFTHLL-ESNFVDTYRHFYPEVTEQYSW-WSYRFHSRDRNAGW 214
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
RIDYF+ S L D+++ ++ +GSDHCPV L
Sbjct: 215 RIDYFVTSTGLTDQLVDAKIHSE------IFGSDHCPVEL 248
>gi|178743|gb|AAA58371.1| apurinic endonuclease [Homo sapiens]
Length = 318
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 95/320 (29%), Positives = 163/320 (50%), Gaps = 45/320 (14%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ ++ K LK +WN + L +K + +++
Sbjct: 34 DKEAAGEGPALYEDPPDQKTSPSA-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQ-------ILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVS 120
PD++ LQ L L P ++Q W + +D + Y+G LL ++C P KVS
Sbjct: 86 EEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVS 143
Query: 121 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ- 179
+ + +++ +GRVI+AEF++F L+ Y PN G + R++WD+ ++F+
Sbjct: 144 YGIGDE--EHDQEGRVIVAEFDSFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGL 199
Query: 180 CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 239
S KPL+ CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L
Sbjct: 200 ASRKPLVLCGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELL 244
Query: 240 KEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGH 299
+ L D++R L+ F W+ + + R+DYF++S L + +++
Sbjct: 245 QAVPLADSFRHLYPNTPYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSK 303
Query: 300 GIELEGFYGSDHCPVSLELS 319
+ SDHCP++L L+
Sbjct: 304 AL------ASDHCPITLYLA 317
>gi|392395397|ref|YP_006431999.1| exodeoxyribonuclease III [Desulfitobacterium dehalogenans ATCC
51507]
gi|390526475|gb|AFM02206.1| exodeoxyribonuclease III [Desulfitobacterium dehalogenans ATCC
51507]
Length = 250
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 91/281 (32%), Positives = 134/281 (47%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPFK--NYQIWWSLA 99
+K ++WN N L + F +F D+ LQ PF+ Y +W+ A
Sbjct: 1 MKLISWNVNGLRACLNKG---FMDFFEQEQADIFCLQETKLQEEQIPFQLEGYYAYWNFA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ K +P VS+ + K +++ +GRVI EFETFYL+ YAPN+ +
Sbjct: 58 QKKGYSGTAVFTKN--EPLSVSYGIGKE--EHDQEGRVITLEFETFYLVTVYAPNS--QR 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R W++ ++ KP+I+CGDLNV+H EID+ +P
Sbjct: 112 GLARLDYRMTWEEEFLSYLKSLEKSKPVIFCGDLNVAHTEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER +F +LK G ID +R + +K D WS + R
Sbjct: 158 -KSNRKNAGFSDEERAKFSGLLKNG-FIDTFRHFYPDK-TDSYTWWSYMFNARTNNAGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF VSE LK+ + + + GSDHCPV LE+
Sbjct: 215 IDYFCVSESLKNEL------KDALIYDKIMGSDHCPVGLEI 249
>gi|170582912|ref|XP_001896345.1| exodeoxyribonuclease III family protein [Brugia malayi]
gi|158596475|gb|EDP34813.1| exodeoxyribonuclease III family protein [Brugia malayi]
Length = 314
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 87/283 (30%), Positives = 146/283 (51%), Gaps = 35/283 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPFKN-YQIWWSLAD 100
+K ++WN L +K N + + +PD+IALQ +N Y + + ++
Sbjct: 59 IKIISWNVAGLRALIKKNG---HSVLVEENPDIIALQETKCVDVPSELQNGYHTFLNASE 115
Query: 101 -SKYAGTALLVKKCFQPKKVSFSLE---KTALKYEPDGRVILAEFETFYLLNTYAPNNGW 156
S + G LL K+ +P KV++S + K + GR+I+AE+E++YL+N Y PN+G
Sbjct: 116 KSGHGGVLLLTKE--EPIKVTYSFDDKSKCDIDGNGKGRIIIAEYESYYLINAYVPNSG- 172
Query: 157 KEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 215
+ +R+ WD F+ + KP+++ GDLNV+H+EID+++P+
Sbjct: 173 -RGLVNLDKRKIWDDYYLTFIKKLDLSKPVVYVGDLNVAHQEIDLANPK----------T 221
Query: 216 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 275
NK GFT ER F +L G +D +R L+ +K+ F WS + +
Sbjct: 222 NRNK----TAGFTDQERNDFTRLLDAG-FVDVFRRLNPDKEGAYTF-WSNMHNAREKNVG 275
Query: 276 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
R+DYF+VSE + +++ C++ L GSDHCP+SL +
Sbjct: 276 WRLDYFVVSERIMNKVKKCDI------LHSIKGSDHCPLSLTI 312
>gi|423522432|ref|ZP_17498905.1| exodeoxyribonuclease [Bacillus cereus HuA4-10]
gi|401175126|gb|EJQ82329.1| exodeoxyribonuclease [Bacillus cereus HuA4-10]
Length = 252
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 88/284 (30%), Positives = 145/284 (51%), Gaps = 39/284 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPF--KNYQIWWSLA 99
+K ++WN N L + F ++ + D+ LQ + + Y +W+ A
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKLQSGQIDLNPEGYYTYWNYA 58
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ KK +P V++ L +++ +GRVI EFE FY++ Y PN+ K
Sbjct: 59 VKKGYSGTAIFTKK--EPLSVTYGL--GIEEHDQEGRVITLEFEDFYMITLYTPNS--KR 112
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R +W+ + ++ + KP+I+CGDLNV+H+EID+ +P
Sbjct: 113 GLERLDYRMEWEDDFRAYIKRLDEKKPVIFCGDLNVAHKEIDLKNP-------------- 158
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
K + PGF+ ER++F L EG +D YR+L+ + + +SW +G R K +
Sbjct: 159 -KSNRKNPGFSDEEREKFTLAL-EGGFVDTYRYLY--PNQEGAYSWWSYLMGA-RAKNIG 213
Query: 277 -RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
R+DYF+VSE +K +II ++ + GSDHCPV L ++
Sbjct: 214 WRLDYFVVSERIKGQIIDAKINSEVM------GSDHCPVELHIN 251
>gi|325660677|ref|ZP_08149307.1| exodeoxyribonuclease [Lachnospiraceae bacterium 4_1_37FAA]
gi|325473038|gb|EGC76246.1| exodeoxyribonuclease [Lachnospiraceae bacterium 4_1_37FAA]
Length = 250
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 140/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+KF++WN N + V+ F +F D D+ +Q + + Y +W+ A
Sbjct: 1 MKFISWNVNGIRACVQKG---FLDFFKEADADIFCIQESKMQEGQLKLELEGYHQFWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K+ +P V++ + +++ +GRVI EFE FY + Y PN+ +
Sbjct: 58 ERKGYSGTAIFTKQ--EPLSVAYGIGME--EHDKEGRVITLEFEEFYFVTVYTPNS--QN 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R +W+ +++ + K P+I+CGDLNV+H EID+ +P
Sbjct: 112 ELARLDYRMQWETEFLKYLKKLEAKKPVIFCGDLNVAHREIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GFT ER +F +L G ID +R+ + E++ + WS + + R
Sbjct: 158 -KTNRKNAGFTDEERGKFTELLSAG-FIDTFRYFYPEQEGIYSW-WSYRFSARAKNAGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF VSE LKDR+ ++ L GSDHCPV L+
Sbjct: 215 IDYFCVSECLKDRLRDAKI------LTDVMGSDHCPVELDF 249
>gi|284047996|ref|YP_003398335.1| exodeoxyribonuclease III [Acidaminococcus fermentans DSM 20731]
gi|283952217|gb|ADB47020.1| exodeoxyribonuclease III [Acidaminococcus fermentans DSM 20731]
Length = 250
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 91/283 (32%), Positives = 144/283 (50%), Gaps = 42/283 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K +TWN N L + F++F+T D++ +Q + R +S F Y +W+ A
Sbjct: 1 MKLITWNVNGLRACMNKG---FADFMTAAGADIVCVQETKMQREQASFDFPGYHEYWNSA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ K +P V++ L + +++ +GRVI AE+ FYL+N Y PN+ +
Sbjct: 58 VKKGYSGTAVFSKT--EPLSVTYGLGQE--EHDQEGRVITAEYPDFYLVNVYTPNS--QR 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG----KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY 214
+ R +W+ Q++ C+G KP+I CGDLNV+ + ID+ +P+
Sbjct: 112 GLTRLEYRMQWEDVFQDY---CAGLARKKPVIVCGDLNVAAQPIDLKNPD---------- 158
Query: 215 VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGK 274
+ GFT ER +F L G +D++R L+ +K+ + WS + R
Sbjct: 159 -----SNHKNAGFTDEERAKFQQFLDHG-FVDSFRSLYPDKEGAYTW-WSYMFKARERNA 211
Query: 275 RMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLE 317
RIDYF+VS+ KDRI + + GSDHCPV LE
Sbjct: 212 GWRIDYFLVSQNGKDRIQDVIIHNEVM------GSDHCPVELE 248
>gi|270290148|ref|ZP_06196374.1| exodeoxyribonuclease III [Pediococcus acidilactici 7_4]
gi|418069863|ref|ZP_12707140.1| exonuclease III [Pediococcus acidilactici MA18/5M]
gi|270281685|gb|EFA27517.1| exodeoxyribonuclease III [Pediococcus acidilactici 7_4]
gi|357536394|gb|EHJ20425.1| exonuclease III [Pediococcus acidilactici MA18/5M]
Length = 251
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 85/282 (30%), Positives = 140/282 (49%), Gaps = 36/282 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L VK+ F + D D+ +Q L Y +W+ A
Sbjct: 1 MKLISWNVNGLRAAVKHG---FLDVFNELDADIFCVQETKLQEGQIDLDLPGYHQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K+ +P VS+ L +++ +GRVI E+E F+L+ Y PN+ +
Sbjct: 58 EKKGYSGTAVFTKR--EPVAVSYGL--GIPEFDQEGRVITLEYEEFFLVTCYTPNS--QP 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R WD + +V Q + KP+I+CGDLNV+HEEID+ +
Sbjct: 112 ELRRLDYRMNWDDAFRAYVKQLADTKPVIFCGDLNVAHEEIDLKN--------------- 156
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
++ + GFT ER++F +L+ G D YR+ + +K+ + WS + R
Sbjct: 157 DRTNHHNAGFTDEERQKFTELLQSG-FTDTYRYFYPDKEGVYSW-WSYRFNARANNAGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
IDYF+ S+ L ++ ++ +GSDHCP+ L+L+
Sbjct: 215 IDYFVTSQALDKQLADAKIHTE------IFGSDHCPIELDLN 250
>gi|304385589|ref|ZP_07367933.1| exodeoxyribonuclease III [Pediococcus acidilactici DSM 20284]
gi|304328093|gb|EFL95315.1| exodeoxyribonuclease III [Pediococcus acidilactici DSM 20284]
Length = 251
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 85/282 (30%), Positives = 140/282 (49%), Gaps = 36/282 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L VK+ F + D D+ +Q L Y +W+ A
Sbjct: 1 MKLISWNVNGLRAAVKHG---FLDVFNELDADIFCVQETKLQEGQIDLDLPGYHQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K+ +P VS+ L +++ +GRVI E+E F+L+ Y PN+ +
Sbjct: 58 EKKGYSGTAVFTKR--EPVAVSYGL--GIPEFDQEGRVITLEYEKFFLVTCYTPNS--QP 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R WD + +V Q + KP+I+CGDLNV+HEEID+ +
Sbjct: 112 ELRRLDYRMNWDDAFRAYVKQLADTKPVIFCGDLNVAHEEIDLKN--------------- 156
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
++ + GFT ER++F +L+ G D YR+ + +K+ + WS + R
Sbjct: 157 DRTNHHNAGFTDEERQKFTELLQSG-FTDTYRYFYPDKEGVYSW-WSYRFNARANNAGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
IDYF+ S+ L ++ ++ +GSDHCP+ L+L+
Sbjct: 215 IDYFVTSQALDKQLADAKIHTE------IFGSDHCPIELDLN 250
>gi|427440664|ref|ZP_18924936.1| exodeoxyribonuclease III [Pediococcus lolii NGRI 0510Q]
gi|425787371|dbj|GAC45724.1| exodeoxyribonuclease III [Pediococcus lolii NGRI 0510Q]
Length = 256
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 86/282 (30%), Positives = 140/282 (49%), Gaps = 36/282 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
LK ++WN N L VK+ F + D D+ +Q L Y +W+ A
Sbjct: 6 LKLISWNVNGLRAAVKHG---FLDVFNELDADMFCVQETKLQEGQIDLDLPGYHQYWNYA 62
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K+ +P VS+ L +++ +GRVI E+E F+L+ Y PN+ +
Sbjct: 63 EKKGYSGTAIFTKR--EPVAVSYGL--GIPEFDQEGRVITLEYEEFFLVTCYTPNS--QP 116
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R WD + +V Q + KP+I+CGDLNV+HEEID+ +
Sbjct: 117 ELRRLDYRMNWDDAFRAYVKQLADTKPVIFCGDLNVAHEEIDLKN--------------- 161
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
++ + GFT ER++F +L+ G D YR+ + +K+ + WS + R
Sbjct: 162 DRTNHHNAGFTDEERQKFTELLQSG-FTDTYRYFYPDKEGVYSW-WSYRFNARANNAGWR 219
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
IDYF+ S+ L ++ ++ +GSDHCP+ L+L+
Sbjct: 220 IDYFVTSQALDKQLADAKIHTE------IFGSDHCPIELDLN 255
>gi|212694611|ref|ZP_03302739.1| hypothetical protein BACDOR_04139 [Bacteroides dorei DSM 17855]
gi|237711123|ref|ZP_04541604.1| exodeoxyribonuclease [Bacteroides sp. 9_1_42FAA]
gi|265750710|ref|ZP_06086773.1| exodeoxyribonuclease III [Bacteroides sp. 3_1_33FAA]
gi|345515228|ref|ZP_08794734.1| exodeoxyribonuclease [Bacteroides dorei 5_1_36/D4]
gi|423228072|ref|ZP_17214478.1| exodeoxyribonuclease III (xth) [Bacteroides dorei CL02T00C15]
gi|423239233|ref|ZP_17220349.1| exodeoxyribonuclease III (xth) [Bacteroides dorei CL03T12C01]
gi|423243335|ref|ZP_17224411.1| exodeoxyribonuclease III (xth) [Bacteroides dorei CL02T12C06]
gi|212663112|gb|EEB23686.1| exodeoxyribonuclease III [Bacteroides dorei DSM 17855]
gi|229434345|gb|EEO44422.1| exodeoxyribonuclease [Bacteroides dorei 5_1_36/D4]
gi|229454967|gb|EEO60688.1| exodeoxyribonuclease [Bacteroides sp. 9_1_42FAA]
gi|263237606|gb|EEZ23056.1| exodeoxyribonuclease III [Bacteroides sp. 3_1_33FAA]
gi|392637108|gb|EIY30983.1| exodeoxyribonuclease III (xth) [Bacteroides dorei CL02T00C15]
gi|392645342|gb|EIY39070.1| exodeoxyribonuclease III (xth) [Bacteroides dorei CL02T12C06]
gi|392647020|gb|EIY40726.1| exodeoxyribonuclease III (xth) [Bacteroides dorei CL03T12C01]
Length = 252
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 140/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
LKF++WN N L F++ + D LQ + F+ YQ +W+ A
Sbjct: 2 LKFISWNVNGLRACYDKG---FADAFNRLEADFFCLQETKMQEGQLDVQFEGYQSYWNYA 58
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K +P V++ L +++ +GRVI E E++YL+ Y PN+ +E
Sbjct: 59 EKKGYSGTAIFSK--VKPLSVTYGL--GIEEHDHEGRVITLELESYYLITVYTPNS--QE 112
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R KWD + ++ + KP+I CGDLNV+H+EID+ +P
Sbjct: 113 ELRRLDYRMKWDDDFRAYLKKLEEKKPVIVCGDLNVAHKEIDLKNP-------------- 158
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GFT ER +F +L+ G D +R+ + E++ + WS + + R
Sbjct: 159 -KTNRKNAGFTDEERAKFTTLLESG-FTDTFRYFYPEQEGIYSW-WSYRFKAREKNAGWR 215
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S+ LKD++ ++ + GSDHCPV L +
Sbjct: 216 IDYFLTSDSLKDKLRGAQIHTDIL------GSDHCPVELTI 250
>gi|355574795|ref|ZP_09044431.1| exodeoxyribonuclease III [Olsenella sp. oral taxon 809 str. F0356]
gi|354818271|gb|EHF02763.1| exodeoxyribonuclease III [Olsenella sp. oral taxon 809 str. F0356]
Length = 261
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 92/288 (31%), Positives = 144/288 (50%), Gaps = 36/288 (12%)
Query: 36 NSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQ 93
S++ L+ V+WN N L +K + P F D DV A+Q L Y
Sbjct: 3 QSEERELRLVSWNVNGLRAVMKKD-PSFPQIFEAADADVFAIQETKLQEGQLDLDLPGYH 61
Query: 94 IWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPD-GRVILAEFETFYLLNTYA 151
W+ A+ K Y+GTA+ ++ +P +V + + ++ D GRV EFE ++ ++ Y
Sbjct: 62 QTWNYAERKGYSGTAVFSRE--EPLRV---IRQIGCEFADDEGRVCALEFERYWFVDVYT 116
Query: 152 PNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAK 210
PN+ K R WD+ +EF+ + KP++ CGD NV+HEEID+ +P+
Sbjct: 117 PNS--KNGLLRLDERMVWDRSYREFLSGLAKEKPVVTCGDFNVAHEEIDLKNPD---TNH 171
Query: 211 LNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGK 270
+N GF+ ER+ FG +L+ G +D++R L+ +++ D WS +
Sbjct: 172 MNA------------GFSDEEREGFGKLLEAG-FVDSFRRLYPDRE-DAYSWWSYRMRAR 217
Query: 271 YRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
R RIDYF+VSE+ D I+ + L+ YGSDHCPV L L
Sbjct: 218 ERNVGWRIDYFLVSEDAADGIVEASI------LDDVYGSDHCPVQLTL 259
>gi|260592674|ref|ZP_05858132.1| exodeoxyribonuclease III [Prevotella veroralis F0319]
gi|260535444|gb|EEX18061.1| exodeoxyribonuclease III [Prevotella veroralis F0319]
Length = 249
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 89/285 (31%), Positives = 147/285 (51%), Gaps = 45/285 (15%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ-ILMRA----LSSPPFKNYQIWW 96
+K ++WN N L V +F F+ D LQ M+A LS P +++Y W
Sbjct: 1 MKLISWNVNGLRACVGK---DFEQQFKDFNADFFCLQETKMQAGQLDLSFPGYESY---W 54
Query: 97 SLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNG 155
+ AD K Y+GTA+ + +P V++ ++ +++ +GRVI E + FYL+ Y PN+
Sbjct: 55 NYADKKGYSGTAIFTRH--KPLSVTYGIDID--EHDHEGRVITLEMDDFYLVTVYTPNS- 109
Query: 156 WKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY 214
++E + R KW+ Q ++ + KP+I CGD+NV+H+EID+ +P
Sbjct: 110 -QDELRRLEYRMKWEDDFQSYLHKLDEIKPVIVCGDMNVAHQEIDLKNP----------- 157
Query: 215 VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRG 273
K + GFT ER++ +L G ID +R L+ E+ +S WS + +
Sbjct: 158 ----KTNRRNAGFTDEERQKMTQLLSNG-FIDTFRTLYPEQ---VTYSWWSYRFRAREKN 209
Query: 274 KRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF++SE L+DR++ ++ GSDHCP+ ++L
Sbjct: 210 TGWRIDYFLISERLRDRLVDAKIHTE------IMGSDHCPIEIDL 248
>gi|417409485|gb|JAA51243.1| Putative exodeoxyribonuclease iii, partial [Desmodus rotundus]
Length = 301
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 94/320 (29%), Positives = 161/320 (50%), Gaps = 45/320 (14%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
EKE + + L D T+ + K LK +WN + L +K + +++
Sbjct: 17 EKEATGEGSVLYEDPPDKNTSPSG-----KSATLKICSWNVDGLRAWIKK---KGLDWVK 68
Query: 69 TFDPDVIALQ-------ILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVS 120
PD++ LQ L L P ++Q W + +D + Y+G +L ++C P KVS
Sbjct: 69 EEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGILSRQC--PLKVS 126
Query: 121 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ- 179
+ + + +++ +GRVI+AE++ F L+ Y PN G + R++WD+ ++F+
Sbjct: 127 YGIGEE--EHDQEGRVIVAEYDAFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGV 182
Query: 180 CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 239
S KPL+ CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L
Sbjct: 183 ASHKPLVLCGDLNVAHEEIDLRNPK------------GNKKN---AGFTPQERQGFGELL 227
Query: 240 KEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGH 299
+ L+D++R L+ F W+ + + R+DYF+VS L + +++
Sbjct: 228 QAVPLVDSFRHLYPNTAYAYTF-WTYMMNARSKNVGWRLDYFLVSHSLLPALCDSKIRSK 286
Query: 300 GIELEGFYGSDHCPVSLELS 319
+ GSDHCP++L L+
Sbjct: 287 AL------GSDHCPITLYLA 300
>gi|334127299|ref|ZP_08501227.1| exodeoxyribonuclease III [Centipeda periodontii DSM 2778]
gi|333389799|gb|EGK60957.1| exodeoxyribonuclease III [Centipeda periodontii DSM 2778]
Length = 255
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 93/284 (32%), Positives = 134/284 (47%), Gaps = 42/284 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQIL-----MRALSSPPFKNYQIWW 96
++FV+WN N L +K F D D LQ L P ++ Y ++
Sbjct: 6 MRFVSWNVNGLRAALKKG---FMESFKELDADAFCLQETKMQEGQAILDLPGYEQY--FY 60
Query: 97 SLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 156
S Y+GTA+ + +P V++ L +++ +GRVI EFE YL+ Y PN+
Sbjct: 61 SAEKKGYSGTAIFTR--VKPLSVAYGLGIE--EHDHEGRVITMEFEDIYLVTVYTPNS-- 114
Query: 157 KEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 215
K R W+ + F+L K P++ CGDLNV+H EID+ +P
Sbjct: 115 KNALARLDYRLVWEDAFRAFLLDLRAKKPVVVCGDLNVAHTEIDLKNP------------ 162
Query: 216 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGK 274
K + GFT ER + +L G ID +R L+ D+ ++ WS +
Sbjct: 163 ---KSNRRNAGFTDEERGKLTELLGAG-FIDTFRALY--PDLTGAYTWWSYLRHARETNA 216
Query: 275 RMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF+VSEEL+DRI A E+ +GSDHCPVSL L
Sbjct: 217 GWRIDYFLVSEELRDRIAAAEIHAD------VFGSDHCPVSLTL 254
>gi|313892072|ref|ZP_07825670.1| exodeoxyribonuclease III [Dialister microaerophilus UPII 345-E]
gi|313119524|gb|EFR42718.1| exodeoxyribonuclease III [Dialister microaerophilus UPII 345-E]
Length = 254
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 92/278 (33%), Positives = 145/278 (52%), Gaps = 34/278 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPE-FSNF-ITTFDPDVIALQILMRALSSPPFKNYQIWWSLA 99
LK+++WN N L +K + + F N F LQ L+ P + YQ W S
Sbjct: 4 LKYISWNVNGLRACIKKGFLDSFKNLNADCFCLQETKLQPHQIELNIPGY--YQYWNSAI 61
Query: 100 DSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEE 159
Y+GTAL K +P VS+ + +++ +GR+I AEFE +L+ Y PN+ + +
Sbjct: 62 KKGYSGTALFTK--IKPISVSYGM--NIEEHDQEGRLITAEFENHFLVVCYTPNS--QRQ 115
Query: 160 ENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPN 218
+ R KW+ + ++L+ + KP+I CGDLNV+H+EID+++P
Sbjct: 116 LARLEYRMKWENDFKNYLLKLTESKPVILCGDLNVAHKEIDLANPS-------------- 161
Query: 219 KEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRI 278
+ GFT ERK+F +L+ G D +R+L+ +K D WS + R RI
Sbjct: 162 -SNHKNAGFTDDERKKFSTLLENG-FTDTFRYLYPDKK-DAYSWWSYFAKSRERNIGWRI 218
Query: 279 DYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
DYF+VS++LK++I ++ E++ GSDHCPV L
Sbjct: 219 DYFLVSDKLKNKIKDAKIHP---EIQ---GSDHCPVEL 250
>gi|237753149|ref|ZP_04583629.1| exodeoxyribonuclease LexA [Helicobacter winghamensis ATCC BAA-430]
gi|229375416|gb|EEO25507.1| exodeoxyribonuclease LexA [Helicobacter winghamensis ATCC BAA-430]
Length = 250
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 90/283 (31%), Positives = 143/283 (50%), Gaps = 40/283 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
++ ++WN N L + + EF N + + DV +Q + R + F NY+ +W+ A
Sbjct: 1 MRLISWNVNGLRACMNKGFMEFFN---SVNADVFCIQESKMQREQAEFDFPNYEEYWNSA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+G A+ K +P V + + ++ +GR+I AEF FYL+N Y PN+ K
Sbjct: 58 EKKGYSGVAIFSK--IKPLSVEYDM--GIAHHDKEGRIITAEFSDFYLVNVYTPNS--KR 111
Query: 159 EENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E + R +W+ + F+ S KP+I CGDLNV+H+EID+ +P
Sbjct: 112 ELERLEYRMEWEDDFRTFLKNLESKKPVIVCGDLNVAHKEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
K + GFT ER++ A+L G D YR + EK ++W + +GK R
Sbjct: 158 -KTNRRNAGFTDEEREKMSALLDSG-FTDTYRHFYPEK--QGAYTW-WSYMGKARANNTG 212
Query: 277 -RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF+ S+ L R+ + + + GSDHCPV +E+
Sbjct: 213 WRIDYFLCSKILDSRLKSASIYPEIL------GSDHCPVGIEI 249
>gi|259500789|ref|ZP_05743691.1| exodeoxyribonuclease III [Lactobacillus iners DSM 13335]
gi|302190760|ref|ZP_07267014.1| exonuclease III [Lactobacillus iners AB-1]
gi|312871137|ref|ZP_07731235.1| exodeoxyribonuclease III [Lactobacillus iners LEAF 3008A-a]
gi|312872693|ref|ZP_07732758.1| exodeoxyribonuclease III [Lactobacillus iners LEAF 2062A-h1]
gi|312874955|ref|ZP_07734974.1| exodeoxyribonuclease III [Lactobacillus iners LEAF 2053A-b]
gi|329919752|ref|ZP_08276703.1| exodeoxyribonuclease III [Lactobacillus iners SPIN 1401G]
gi|259167483|gb|EEW51978.1| exodeoxyribonuclease III [Lactobacillus iners DSM 13335]
gi|311089700|gb|EFQ48125.1| exodeoxyribonuclease III [Lactobacillus iners LEAF 2053A-b]
gi|311091735|gb|EFQ50114.1| exodeoxyribonuclease III [Lactobacillus iners LEAF 2062A-h1]
gi|311093151|gb|EFQ51497.1| exodeoxyribonuclease III [Lactobacillus iners LEAF 3008A-a]
gi|328937099|gb|EGG33527.1| exodeoxyribonuclease III [Lactobacillus iners SPIN 1401G]
Length = 275
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 94/300 (31%), Positives = 139/300 (46%), Gaps = 50/300 (16%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFS------NFITTFDPDVIALQILMRALSSPP------- 88
+ F++WN +SL + + N I +PDV+A+Q + P
Sbjct: 1 MLFISWNIDSLNAALTGDSDRAHETRSVLNKIKEANPDVVAIQETKLRANGPTKKHCDIL 60
Query: 89 ---FKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEF 141
F++YQ W A YAGT L KK + P+ V++ L + +GR+I EF
Sbjct: 61 ADIFEDYQYVWRSSQEPARKSYAGTMFLYKKNYHPQ-VTYPLIGAPDTMDQEGRIITLEF 119
Query: 142 ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDV 200
+TFYL Y PN+G E R WD + QE++ + KP+I GD NV+H+EID+
Sbjct: 120 DTFYLTQVYTPNSG--NELKRLADREIWDTKYQEYLAKLDQNKPVIASGDYNVAHQEIDL 177
Query: 201 SHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCG 260
HPE + GFT ERK F +L G ID +R+++ D+
Sbjct: 178 KHPE---------------TNHHNAGFTDEERKGFSKLLSLG-FIDTFRYIN--GDITDV 219
Query: 261 FSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
+SW I K RIDY++VS+ L D+I +M G DHCP+ L++
Sbjct: 220 YSWWSQRIRTSKTNNAGWRIDYYLVSQRLADKIEQSKMIDTGDR------KDHCPILLKI 273
>gi|32266427|ref|NP_860459.1| exodeoxyribonuclease LexA [Helicobacter hepaticus ATCC 51449]
gi|32262477|gb|AAP77525.1| exodeoxyribonuclease LexA [Helicobacter hepaticus ATCC 51449]
Length = 252
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 90/285 (31%), Positives = 142/285 (49%), Gaps = 40/285 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D+ +Q + + + F+NY+ +W+ A
Sbjct: 1 MKLISWNVNGLRACMNKG---FMDFFNEVNADIFCIQESKMCKEQAQFHFENYKEYWNSA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+G +L K QP V++ + T ++ +GR+I AE+ FYL+N Y PN+ K
Sbjct: 58 EKKGYSGVVILSKT--QPINVAYDMGITY--HDKEGRIITAEYPHFYLVNVYTPNS--KR 111
Query: 159 EENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R KW+ + FV + K +I CGDLNV+H+EID+ +P
Sbjct: 112 ELERLDYRMKWEDDFRAFVKNLENHKSVIICGDLNVAHQEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
K + GFT ER + A+L G ID +R+ + + +SW + +GK R
Sbjct: 158 -KTNRRNAGFTDEERNKMSALLDAG-FIDTFRYFYPT--LTGAYSW-WSYMGKARENNTG 212
Query: 277 -RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 320
RIDYF+ S+ L + + H +GSDHCPV LEL +
Sbjct: 213 WRIDYFLCSQSLTPSLKDANIYPH------IFGSDHCPVGLELKQ 251
>gi|398309083|ref|ZP_10512557.1| exodeoxyribonuclease III [Bacillus mojavensis RO-H-1]
Length = 252
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 89/284 (31%), Positives = 146/284 (51%), Gaps = 39/284 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ---ILMRALSSPPFKNYQIWWSL 98
+K ++WN N L R +F +++ D D++ LQ I + P + Y ++W+
Sbjct: 1 MKLISWNVNGL--RAVMRKMDFLSYLKDEDADIVCLQETKIQDGQVDLEP-EGYHVYWNY 57
Query: 99 ADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWK 157
A+ K Y+GTA+ K+ +P V + + +++ +GRVI EFE Y++ Y PN K
Sbjct: 58 AEKKGYSGTAVFSKQ--KPLNVMYGI--GIEEHDQEGRVITLEFENMYVMTVYTPNA--K 111
Query: 158 EEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVP 216
R +W++ + F+L+ K P+I CGDLNV+H+EID+ +P
Sbjct: 112 RGLERIDYRLQWEEALLAFILELDKKKPVILCGDLNVAHQEIDLKNP------------- 158
Query: 217 PNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG-KYRGKR 275
K + GF+ ER F L+ G ID++R+L+ D++ +SW G + R
Sbjct: 159 --KANRNNAGFSDQERGAFTRFLEAG-FIDSFRYLY--PDLEGAYSWWSYRAGARDRNIG 213
Query: 276 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
R+DYF+VSE LK +I ++ + GSDHCPV L ++
Sbjct: 214 WRLDYFVVSERLKGQIEDAKISAQVL------GSDHCPVELTIN 251
>gi|363893051|ref|ZP_09320191.1| exodeoxyribonuclease III (xth) [Eubacteriaceae bacterium CM2]
gi|402837946|ref|ZP_10886461.1| exodeoxyribonuclease III [Eubacteriaceae bacterium OBRC8]
gi|361961782|gb|EHL14961.1| exodeoxyribonuclease III (xth) [Eubacteriaceae bacterium CM2]
gi|402274377|gb|EJU23561.1| exodeoxyribonuclease III [Eubacteriaceae bacterium OBRC8]
Length = 251
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 89/282 (31%), Positives = 142/282 (50%), Gaps = 38/282 (13%)
Query: 42 LKFVTWNANSL-LLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSL 98
+KFV+WN N L +R K F + FD D LQ L F Y +W+
Sbjct: 1 MKFVSWNVNGLRAVREKG----FEDIFKNFDADAFCLQEIKLQENQIELHFDGYYEYWNY 56
Query: 99 ADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWK 157
A+ K Y+GTA+ K +P V + L +++ +GR+I E+E +Y+ Y PN +
Sbjct: 57 ANKKGYSGTAIYTKH--KPIDVHYGL--GIEEHDMEGRLITLEYENYYIATVYTPNA--Q 110
Query: 158 EEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVP 216
E R+KW++ +E+ + KP+I CGD+NV+H+EID+ +P
Sbjct: 111 PELARLAYRQKWEEDFREYFKKLDEKKPVIICGDMNVAHQEIDLKNP------------- 157
Query: 217 PNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM 276
K + PGF+ ER++F +L G ID +R+ + +K + + WS +
Sbjct: 158 --KNNRKNPGFSDEEREKFTLLLNAG-FIDTFRYFYPDKTDEYSW-WSYRFNARKNNAGW 213
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF VS+ LK+++ + + + GSDHCPVS+E+
Sbjct: 214 RIDYFCVSDRLKEKLKSASIH------QDVMGSDHCPVSIEI 249
>gi|404330185|ref|ZP_10970633.1| exodeoxyribonuclease III [Sporolactobacillus vineae DSM 21990 =
SL153]
Length = 252
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 88/284 (30%), Positives = 138/284 (48%), Gaps = 39/284 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPFKN---YQIWWSL 98
+KF++WN N R + + ++ D +Q S F+ Q W+
Sbjct: 1 MKFISWNVNGF--RALQRKMDVNEWLKNTGADAFCIQETKLQRSQVDFQTADYLQYWYDA 58
Query: 99 ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
Y+GTA++ K +P V++ + +E GRVI E+E +YL+ Y PN
Sbjct: 59 EKKGYSGTAIITKN--KPLNVTYGIGVDEFDHE--GRVITLEYEDYYLMTVYTPNAQRDL 114
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ F R KW + F+ + KP+++CGDLNV+H+ ID+ +P
Sbjct: 115 KRLGF--RLKWGQAFTNFIDRLDRRKPVVFCGDLNVAHQAIDLKNP-------------- 158
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
K + GFT ER+ F +L G ID++R+LH D + +SW + +G R + +
Sbjct: 159 -KSNMKNAGFTAEERQDFSELLDTG-FIDSFRYLH--PDREGAYSW-WSYMGNARARNVG 213
Query: 277 -RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
RIDYF++SE LK RI ++ L GSDHCPV +EL+
Sbjct: 214 WRIDYFVISERLKKRIKDAKI------LADVRGSDHCPVEIELA 251
>gi|452820422|gb|EME27464.1| exodeoxyribonuclease III [Galdieria sulphuraria]
Length = 307
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 96/311 (30%), Positives = 150/311 (48%), Gaps = 38/311 (12%)
Query: 19 LSPSKKDGETTETSSEENS-KKDP---LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDV 74
LSP+KK T S ENS KKD LKF++WN NSL ++ + N ++ DPD
Sbjct: 21 LSPTKKKNCTQLDSITENSPKKDTETLLKFLSWNVNSLKRVLERK--QLVNLVSQEDPDF 78
Query: 75 IALQILMRALSSPP----FKNYQIWWSLADSK--YAGTALLVKKCFQPKKVSFSLEKTAL 128
I LQ P Y+ +++ ++K Y+GTAL K P V E
Sbjct: 79 ICLQETKLTEDKVPGAFLLPQYKKFFNCCETKRGYSGTALFSK--MAPIAVLKDFEGVYS 136
Query: 129 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 187
++ GR+I+AE+E FY+ + Y PN+G K + + R WD ++ + KP++
Sbjct: 137 EHNKTGRLIVAEYENFYVASVYVPNSGDKLKNLEY-RVHSWDPSFCSYICELQMKKPIVL 195
Query: 188 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 247
GDLNV+H++IDV PE + + GF +ER F L+E +++D+
Sbjct: 196 LGDLNVAHQDIDVYAPERLGS---------------KAGFVQSERNNFSKFLEETKMVDS 240
Query: 248 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 307
+R+L+ + F W G+ R + RIDY ++S L L+
Sbjct: 241 FRYLYPHRKEAYSF-WDYKTGGRLRNQGWRIDYCLLSSSLV------SNLVDAFILDKIE 293
Query: 308 GSDHCPVSLEL 318
GSDHCP+ +++
Sbjct: 294 GSDHCPIGIQM 304
>gi|238928084|ref|ZP_04659844.1| exodeoxyribonuclease III Xth [Selenomonas flueggei ATCC 43531]
gi|238884044|gb|EEQ47682.1| exodeoxyribonuclease III Xth [Selenomonas flueggei ATCC 43531]
Length = 250
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 91/283 (32%), Positives = 134/283 (47%), Gaps = 40/283 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQIL-----MRALSSPPFKNYQIWW 96
++FV+WN N L +K F D D LQ L P ++ Y ++
Sbjct: 1 MRFVSWNVNGLRAALKKG---FMESFRELDADAFCLQETKMQEGQAILDLPGYEQY--FY 55
Query: 97 SLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 156
S Y+GTA+ + +P V++ + +A ++ +GRVI EF+ YL+ Y PN
Sbjct: 56 SAEKKGYSGTAIFTR--VKPLSVAYGIGISA--HDNEGRVITMEFDDVYLVTVYTPNA-- 109
Query: 157 KEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 215
K R W+ + F+L K P++ CGDLNV+H EID+ +P
Sbjct: 110 KRALERLDYRMMWEDAFRAFLLGLRAKKPVVVCGDLNVAHTEIDLKNP------------ 157
Query: 216 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 275
K + GFT ER +F +L+ G ID +R L+ ++ + WS +
Sbjct: 158 ---KSNRRNAGFTDEERGKFTELLQAG-FIDTFRALYPDRTGAYTW-WSYLRHARETNAG 212
Query: 276 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF+VS EL+DRI A E+ +GSDHCPVSL L
Sbjct: 213 WRIDYFLVSAELRDRIAAAEIHAD------IFGSDHCPVSLTL 249
>gi|32024|emb|CAA42437.1| HAP1 [Homo sapiens]
Length = 318
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 95/320 (29%), Positives = 162/320 (50%), Gaps = 45/320 (14%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 DKEAAGEGPALYEDPPDQKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQ-------ILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVS 120
PD++ LQ L L P ++Q W + +D + Y+G LL ++C P KVS
Sbjct: 86 EEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVS 143
Query: 121 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ- 179
+ + +++ +GRVI+AEF++F L+ Y PN G + R++WD+ ++F+
Sbjct: 144 YGIGDE--EHDQEGRVIVAEFDSFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGL 199
Query: 180 CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 239
S KPL+ CGDLNV+HEEID+ +P+ NK++ GFT E + FG +L
Sbjct: 200 ASRKPLVLCGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQEAQGFGELL 244
Query: 240 KEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGH 299
+ L D++R L+ F W+ + + R+DYF++S L + +++
Sbjct: 245 QAVPLADSFRHLYPNTPYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSK 303
Query: 300 GIELEGFYGSDHCPVSLELS 319
+ GSDHCP++L L+
Sbjct: 304 AL------GSDHCPITLYLA 317
>gi|432112926|gb|ELK35512.1| DNA-(apurinic or apyrimidinic site) lyase [Myotis davidii]
Length = 320
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 95/320 (29%), Positives = 161/320 (50%), Gaps = 45/320 (14%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
EKE + + L D +T+ + K LK +WN + L +K + +++
Sbjct: 36 EKEAAGEGSVLYEDPPDQKTSPSG-----KSATLKICSWNVDGLRAWIKK---KGLDWVK 87
Query: 69 TFDPDVIALQ-------ILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVS 120
PD++ LQ L L P ++Q W + +D + Y+G LL ++C P KVS
Sbjct: 88 EEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVS 145
Query: 121 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ- 179
+ + + +++ +GRVI+AE++ F L+ Y PN G + R++WD+ ++F+
Sbjct: 146 YGIGEE--EHDQEGRVIVAEYDAFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKDL 201
Query: 180 CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 239
S KPL+ CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L
Sbjct: 202 ASRKPLVLCGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELL 246
Query: 240 KEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGH 299
+ L D++R L+ F W+ + + R+DYF+VS L + +++
Sbjct: 247 QAVPLADSFRHLYPNTAYAYTF-WTYMMNARSKNVGWRLDYFLVSHSLLPALCDSKIRSK 305
Query: 300 GIELEGFYGSDHCPVSLELS 319
+ GSDHCP++L L+
Sbjct: 306 AL------GSDHCPITLYLA 319
>gi|429738347|ref|ZP_19272158.1| exodeoxyribonuclease III [Prevotella saccharolytica F0055]
gi|429160421|gb|EKY02885.1| exodeoxyribonuclease III [Prevotella saccharolytica F0055]
Length = 249
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 90/282 (31%), Positives = 135/282 (47%), Gaps = 39/282 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+KF++WN N L V +F T + D LQ + F YQ +W+ A
Sbjct: 1 MKFISWNVNGLRACVGK---DFEAQFKTLNADFFCLQETKMQAGQLYLQFDGYQSYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
D + Y+GTA+ + P V++ + A +E GRVI E FYL+ Y PN+ ++
Sbjct: 58 DKRGYSGTAIYTRHT--PLSVTYGIGVDAHDHE--GRVITLEMNDFYLVTVYTPNS--QD 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R W+ + F+L KP+I CGD+NV+H+EID+ +P
Sbjct: 112 ELKRLDYRMTWEDDFKTFLLALDARKPVIVCGDMNVAHQEIDIKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
K + GFT ER++ +L G D +RF++ E + +S WS + R
Sbjct: 158 -KTNRRNAGFTDEEREKMTVLLDSG-FTDTFRFMYPE---EVTYSWWSYRFKARERNTGW 212
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF+VS+ LK +I ++ GSDHCPV L+L
Sbjct: 213 RIDYFLVSDRLKPQIADAKIH------TDILGSDHCPVELDL 248
>gi|422344654|ref|ZP_16425579.1| exodeoxyribonuclease [Selenomonas noxia F0398]
gi|355376723|gb|EHG23965.1| exodeoxyribonuclease [Selenomonas noxia F0398]
Length = 250
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 92/283 (32%), Positives = 133/283 (46%), Gaps = 40/283 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQIL-----MRALSSPPFKNYQIWW 96
++FV+WN N L +K F + DV LQ L P ++ Y ++
Sbjct: 1 MRFVSWNVNGLRAALKKG---FMESFKELNADVFCLQETKMQEGQAILDLPGYEQY--FY 55
Query: 97 SLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 156
S Y+GTA+ + +P VS+ + +++ +GRVI E YL+ Y PN
Sbjct: 56 SAEKKGYSGTAIFTR--VKPLSVSYGIGIE--EHDNEGRVITMELPDVYLVTVYTPNA-- 109
Query: 157 KEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 215
K R W+ + F+L K P++ CGDLNV+H EID+ +P
Sbjct: 110 KRALERLDYRMAWEDSFRAFLLDLRAKKPVVVCGDLNVAHTEIDLKNP------------ 157
Query: 216 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 275
K + GFT ER +FG +L G +D +R L+ +K + WS +
Sbjct: 158 ---KSNRRNAGFTDEERGKFGELLAAG-FVDTFRALYPDKTGAYTW-WSYLRHARETNAG 212
Query: 276 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF+VSEEL+DRI A E+ +GSDHCPVSL L
Sbjct: 213 WRIDYFLVSEELRDRISAAEIHAD------VFGSDHCPVSLTL 249
>gi|281417190|ref|ZP_06248210.1| exodeoxyribonuclease III Xth [Clostridium thermocellum JW20]
gi|281408592|gb|EFB38850.1| exodeoxyribonuclease III Xth [Clostridium thermocellum JW20]
Length = 251
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 88/280 (31%), Positives = 138/280 (49%), Gaps = 36/280 (12%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLAD 100
K ++WN N L + F ++ D D+ +Q + Y +W+ A+
Sbjct: 3 KLISWNVNGLRACINKG---FLDYFKKADADIFCIQESKVQPGQIELELDGYHQYWNYAE 59
Query: 101 SK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEE 159
K Y+GTA+ + +P V + +++ +GRVI EF+ +YL+N Y PN K+E
Sbjct: 60 RKGYSGTAVFTR--IKPLYVQNGIGID--EHDREGRVITLEFDNYYLVNVYTPNA--KKE 113
Query: 160 ENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPN 218
R KW+ + +++ K P+I CGD+NV+H+EID+ +PE N
Sbjct: 114 LERLDYRMKWEDDFRNYLVGLKAKKPVIVCGDMNVAHKEIDLKNPE------------SN 161
Query: 219 KEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRI 278
+ GFT ER +F +L G ID +RF + +K + WS + R RI
Sbjct: 162 RR---SAGFTDEERAKFTELLNAG-FIDTFRFFYPDKTGAYTW-WSYMFNARARNAGWRI 216
Query: 279 DYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
DYF VSEELKDR+++ + + GSDHCPV L++
Sbjct: 217 DYFCVSEELKDRLVSASIH------DDVMGSDHCPVELQI 250
>gi|348577629|ref|XP_003474586.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like [Cavia
porcellus]
Length = 318
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 95/320 (29%), Positives = 165/320 (51%), Gaps = 45/320 (14%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
EKE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 EKEEAGEGPALYEDPPDKKTSPSG-----KSATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQILMRALSSPPFK-------NYQIWWSLADSK-YAGTALLVKKCFQPKKVS 120
PD++ LQ + + P + ++Q W + +D + Y+G LL ++C P KVS
Sbjct: 86 EEAPDILCLQETKCSENKLPAELQELSELSHQYWSAPSDKEGYSGVGLLSRQC--PIKVS 143
Query: 121 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ- 179
+ + + +++ +GRVI+AEF++F L+ Y PN G + R++WD+ ++F+
Sbjct: 144 YGIGEE--EHDQEGRVIVAEFDSFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGL 199
Query: 180 CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 239
S KPL+ CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L
Sbjct: 200 ASRKPLVLCGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELL 244
Query: 240 KEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGH 299
+ L D++R L+ F W+ + + R+DYF++S L + +++
Sbjct: 245 QAVPLADSFRHLYPNAAYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSK 303
Query: 300 GIELEGFYGSDHCPVSLELS 319
+ GSDHCP++L L+
Sbjct: 304 AL------GSDHCPITLYLA 317
>gi|302345223|ref|YP_003813576.1| exodeoxyribonuclease III [Prevotella melaninogenica ATCC 25845]
gi|302150206|gb|ADK96468.1| exodeoxyribonuclease III [Prevotella melaninogenica ATCC 25845]
Length = 249
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 90/282 (31%), Positives = 139/282 (49%), Gaps = 39/282 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+KF++WN N L V EF D D LQ + F Y+ +W+ A
Sbjct: 1 MKFISWNVNGLRACVGK---EFEQQFKDLDADFFCLQETKMQAGQLDLSFPGYESYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
D K Y+GTA+ K +P V++ ++ +++ +GRVI E E FYL+ Y PN+ ++
Sbjct: 58 DKKGYSGTAIYTKH--KPLSVTYGIDID--EHDHEGRVITLEMEDFYLVTVYTPNS--QD 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R KW+ Q ++ + KP+I CGD+NV+H+EID+ +P
Sbjct: 112 GLRRLEYRMKWEDDFQAYLHKLDEKKPVIVCGDMNVAHQEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
K + GFT ER++ +L G ID +R L+ E+ +S WS + +
Sbjct: 158 -KTNHKNAGFTDEEREKMTQLLSNG-FIDTFRTLYPEQ---VTYSWWSYRFRAREKNTGW 212
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF++SE LKDR+ ++ GSDHCPV + L
Sbjct: 213 RIDYFLISERLKDRLEDAKIHTE------IMGSDHCPVEIIL 248
>gi|340347509|ref|ZP_08670617.1| exodeoxyribonuclease III [Prevotella dentalis DSM 3688]
gi|433653537|ref|YP_007297391.1| exodeoxyribonuclease III [Prevotella dentalis DSM 3688]
gi|339609205|gb|EGQ14080.1| exodeoxyribonuclease III [Prevotella dentalis DSM 3688]
gi|433304070|gb|AGB29885.1| exodeoxyribonuclease III [Prevotella dentalis DSM 3688]
Length = 266
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 90/294 (30%), Positives = 142/294 (48%), Gaps = 46/294 (15%)
Query: 42 LKFVTWNANSLLLRVKNNWPE--------FSNFITTFDPDVIALQ--ILMRALSSPPFKN 91
+KF++WN N L VK + F + D D LQ L F
Sbjct: 1 MKFISWNVNGLRACVKPKTDDAGNVTSKGFEAYFKELDADFFCLQETKLQAGQIDLQFDG 60
Query: 92 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 150
YQ +W+ A+ K Y+GTA+ + +P V++ + K +++ +GRVI E+ FYL+ Y
Sbjct: 61 YQSYWNYAEKKGYSGTAVFTRH--EPLGVTYGIGKE--EHDHEGRVITLEYPDFYLITCY 116
Query: 151 APNNG----WKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEF 205
PN+ + + R W+ +E++++ KP+I CGDLNV+HEE+D+ +P
Sbjct: 117 TPNSQDTIKGELKPRRLGYRMTWEDDFREYMMRLDKNKPVIMCGDLNVAHEEMDLKNP-- 174
Query: 206 FAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WS 264
K + GFT ER++ +L G +D++R L+ E+ +S WS
Sbjct: 175 -------------KTNHNNAGFTDEEREKMTTLLGSG-FLDSFRMLYPEQ---VTYSWWS 217
Query: 265 GNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
+ + RIDYFI S+ L+DRI ++ GSDHCPV L+L
Sbjct: 218 YRMRAREKNTGWRIDYFITSDRLRDRIADAKIHTE------IMGSDHCPVELDL 265
>gi|229816298|ref|ZP_04446607.1| hypothetical protein COLINT_03350 [Collinsella intestinalis DSM
13280]
gi|229808149|gb|EEP43942.1| hypothetical protein COLINT_03350 [Collinsella intestinalis DSM
13280]
Length = 280
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 91/306 (29%), Positives = 141/306 (46%), Gaps = 53/306 (17%)
Query: 36 NSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQ 93
++ LK +WN N L +K + P F++ + D D++ LQ L Y
Sbjct: 3 DTASRALKLASWNVNGLRAVLKKD-PSFTDIVAELDADILGLQETKLQEGQVELDLPGYH 61
Query: 94 IWWSLADSK-YAGTALLVKKCFQPKKVSFS----------------LEKTALKYEPDGRV 136
WS A+ K Y+GTA+ ++ +P V + LE A+ +GRV
Sbjct: 62 QVWSYAERKGYSGTAVFCRE--EPLSVRHADAVLAAGRAAGLSDDELELVAVA-ATEGRV 118
Query: 137 ILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC---SGKPLIWCGDLNV 193
EFE F+ ++ Y PN + E R WD + F+ +GKP++ CGD NV
Sbjct: 119 CALEFERFWFVDVYTPNA--QGELARLSTRMAWDDAYRAFLRSLEDETGKPVVTCGDFNV 176
Query: 194 SHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHK 253
+H EID+ +P K + G GF+ ER +FG +L G D +R
Sbjct: 177 AHNEIDLKNP---------------KSNRGNAGFSDEERAKFGELLDAG-YTDTFR--AA 218
Query: 254 EKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHC 312
+++ +S WS + RIDYF+VS+ + DR+ AC ++ +GSDHC
Sbjct: 219 NPNLEGAYSWWSYRFNARKNNAGWRIDYFLVSDAIADRVRACGIRND------IFGSDHC 272
Query: 313 PVSLEL 318
PV+LE+
Sbjct: 273 PVTLEI 278
>gi|419842315|ref|ZP_14365665.1| exodeoxyribonuclease III [Fusobacterium necrophorum subsp.
funduliforme ATCC 51357]
gi|421501617|ref|ZP_15948576.1| exodeoxyribonuclease III [Fusobacterium necrophorum subsp.
funduliforme Fnf 1007]
gi|386902224|gb|EIJ67066.1| exodeoxyribonuclease III [Fusobacterium necrophorum subsp.
funduliforme ATCC 51357]
gi|402265769|gb|EJU15229.1| exodeoxyribonuclease III [Fusobacterium necrophorum subsp.
funduliforme Fnf 1007]
Length = 250
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 91/282 (32%), Positives = 141/282 (50%), Gaps = 38/282 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPF--KNYQIWWSLA 99
+K ++WN N + +K F + D D+ LQ + K Y +W+ A
Sbjct: 1 MKLISWNVNGIRACLKKG---FMEYFQAQDADIFCLQETKCSAGQVELDLKGYHQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ KK +P VS+ L +++ +GRVI EFE FY++ Y PN+ K
Sbjct: 58 EKKGYSGTAIFTKK--EPLSVSYGL--GIEEHDQEGRVICLEFEDFYMVTVYTPNS--KN 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R W+ + ++ + + KP++ CGD+NV+HEEID+ +P
Sbjct: 112 ELERLDYRMIWEDEFRNYLSKLNEKKPVVVCGDMNVAHEEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
K + GFT ER +F +L+ G D++R+L+ D +S WS +
Sbjct: 158 -KTNRRNAGFTDEERNKFTELLQAG-FTDSFRYLY--PDTLHAYSWWSYRANARKNNTGW 213
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF+VS + K++I E+ E E GSDHCPV+L L
Sbjct: 214 RIDYFVVSNDWKEQIQEAEIHA---EQE---GSDHCPVALYL 249
>gi|410460164|ref|ZP_11313847.1| exodeoxyribonuclease III [Bacillus azotoformans LMG 9581]
gi|409927394|gb|EKN64530.1| exodeoxyribonuclease III [Bacillus azotoformans LMG 9581]
Length = 251
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 91/282 (32%), Positives = 140/282 (49%), Gaps = 36/282 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L V+ F ++ D+ +Q L +NY +W+ A
Sbjct: 1 MKLISWNVNGLRACVQKG---FLDYFHEMGADIFCVQETKLQEGQIDLNLENYNQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ K +P VS+ L + +E GR I EF +FYL+N Y PN+ +
Sbjct: 58 AKKGYSGTAVFTK--IKPISVSYGLGEHMEDHE--GRAITLEFPSFYLVNVYTPNS--QR 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R +W+ I+ ++L+ KP+I CGDLNV+H+EID+ +
Sbjct: 112 DLARLSYRLEWEDNIRNYLLELDKVKPVILCGDLNVAHQEIDLKNY-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + G GFT ER++ +L G +D++R+L+ +K D WS + R R
Sbjct: 158 -KTNRGNSGFTDEEREKMTRLLDSG-FVDSFRYLYPDKG-DVYSWWSYMNKVRERNIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
IDYFI+S+ L II ++ GSDHCPV LEL+
Sbjct: 215 IDYFILSKGLSSSIIDSQIHTE------IMGSDHCPVCLELN 250
>gi|363893404|ref|ZP_09320502.1| exodeoxyribonuclease [Eubacteriaceae bacterium ACC19a]
gi|361963708|gb|EHL16774.1| exodeoxyribonuclease [Eubacteriaceae bacterium ACC19a]
Length = 251
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 89/282 (31%), Positives = 141/282 (50%), Gaps = 38/282 (13%)
Query: 42 LKFVTWNANSL-LLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSL 98
+KFV+WN N L +R K F + FD D LQ L F Y +W+
Sbjct: 1 MKFVSWNVNGLRAVREKG----FEDIFKNFDADAFCLQEIKLQENQIELHFDGYYEYWNY 56
Query: 99 ADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWK 157
A+ K Y+GTA+ K +P V + L +++ +GR+I E+E +Y+ Y PN +
Sbjct: 57 ANKKGYSGTAIYTKH--KPIDVHYGL--GIEEHDMEGRLITLEYENYYIATVYTPNA--Q 110
Query: 158 EEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVP 216
E R+KW+ +E+ + KP+I CGD+NV+H+EID+ +P
Sbjct: 111 PELARLAYRQKWEDDFREYFKKLDEKKPVIICGDMNVAHQEIDLKNP------------- 157
Query: 217 PNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM 276
K + PGF+ ER++F L G ID +R+++ +K + + WS +
Sbjct: 158 --KNNRKNPGFSDEEREKFTIFLNAG-FIDTFRYIYPDKTDEYSW-WSYRFNARKNNAGW 213
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF VS+ LK+++ + + + GSDHCPVS+E+
Sbjct: 214 RIDYFCVSDRLKEKLKSASIH------QDVMGSDHCPVSIEI 249
>gi|125972979|ref|YP_001036889.1| exodeoxyribonuclease III Xth [Clostridium thermocellum ATCC 27405]
gi|256004776|ref|ZP_05429751.1| exodeoxyribonuclease III Xth [Clostridium thermocellum DSM 2360]
gi|385779105|ref|YP_005688270.1| exodeoxyribonuclease III Xth [Clostridium thermocellum DSM 1313]
gi|419721683|ref|ZP_14248840.1| exodeoxyribonuclease III [Clostridium thermocellum AD2]
gi|419725225|ref|ZP_14252277.1| exodeoxyribonuclease III [Clostridium thermocellum YS]
gi|125713204|gb|ABN51696.1| exodeoxyribonuclease III Xth [Clostridium thermocellum ATCC 27405]
gi|255991226|gb|EEU01333.1| exodeoxyribonuclease III Xth [Clostridium thermocellum DSM 2360]
gi|316940785|gb|ADU74819.1| exodeoxyribonuclease III Xth [Clostridium thermocellum DSM 1313]
gi|380771412|gb|EIC05280.1| exodeoxyribonuclease III [Clostridium thermocellum YS]
gi|380782260|gb|EIC11901.1| exodeoxyribonuclease III [Clostridium thermocellum AD2]
Length = 251
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 88/280 (31%), Positives = 138/280 (49%), Gaps = 36/280 (12%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLAD 100
K ++WN N L + F ++ D D+ +Q + Y +W+ A+
Sbjct: 3 KLISWNVNGLRACINKG---FLDYFKKADADIFCIQESKVQPGQIELELDGYHQYWNYAE 59
Query: 101 SK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEE 159
K Y+GTA+ + +P V + +++ +GRVI EF+ +YL+N Y PN K+E
Sbjct: 60 RKGYSGTAVFTR--IKPLCVQNGIGID--EHDREGRVITLEFDNYYLVNVYTPNA--KKE 113
Query: 160 ENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPN 218
R KW+ + +++ K P+I CGD+NV+H+EID+ +PE N
Sbjct: 114 LERLDYRMKWEDDFRNYLVGLKAKKPVIVCGDMNVAHKEIDLKNPE------------SN 161
Query: 219 KEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRI 278
+ GFT ER +F +L G ID +RF + +K + WS + R RI
Sbjct: 162 RR---SAGFTDEERAKFTELLNAG-FIDTFRFFYPDKTGAYTW-WSYMFNARARNAGWRI 216
Query: 279 DYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
DYF VSEELKDR+++ + + GSDHCPV L++
Sbjct: 217 DYFCVSEELKDRLVSASIH------DDVMGSDHCPVELQI 250
>gi|420414387|ref|ZP_14913507.1| exodeoxyribonuclease III [Helicobacter pylori NQ4099]
gi|393026721|gb|EJB27818.1| exodeoxyribonuclease III [Helicobacter pylori NQ4099]
Length = 250
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 141/281 (50%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ ++ +++ +GRVI EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGIDME--EHDKEGRVITCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER++F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEEREKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKDIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S+ LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSDPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|429735837|ref|ZP_19269760.1| exodeoxyribonuclease III [Selenomonas sp. oral taxon 138 str.
F0429]
gi|429156761|gb|EKX99382.1| exodeoxyribonuclease III [Selenomonas sp. oral taxon 138 str.
F0429]
Length = 250
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 92/284 (32%), Positives = 135/284 (47%), Gaps = 42/284 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQIL-----MRALSSPPFKNYQIWW 96
++FV+WN N L +K F + D LQ L P ++ Y ++
Sbjct: 1 MRFVSWNVNGLRAALKKG---FMESFKELNADAFCLQETKMQEGQAILDLPGYEQY--FY 55
Query: 97 SLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 156
S Y+GTA+ + +P VS+ + +++ +GRVI EFE YL+ Y PN+
Sbjct: 56 SAEKKGYSGTAIFTR--LKPLSVSYGIGIE--EHDNEGRVITMEFEDVYLVTVYTPNS-- 109
Query: 157 KEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 215
K R W+ + F+L K P++ CGDLNV+H EID+ +P
Sbjct: 110 KNGLLRLDYRMVWEDAFRAFLLDLRAKKPVVVCGDLNVAHTEIDLKNP------------ 157
Query: 216 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGK 274
K + GFT ER +F +L G +D +R L+ D+ ++ WS +
Sbjct: 158 ---KSNRRNAGFTDEERGKFTELLAAG-FVDTFRALY--PDLTGAYTWWSYLRHARETNA 211
Query: 275 RMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF+VSEEL+DRI A E+ +GSDHCPVSL L
Sbjct: 212 GWRIDYFLVSEELRDRIAAAEIHAD------VFGSDHCPVSLTL 249
>gi|304438523|ref|ZP_07398463.1| exodeoxyribonuclease III [Selenomonas sp. oral taxon 149 str.
67H29BP]
gi|304368606|gb|EFM22291.1| exodeoxyribonuclease III [Selenomonas sp. oral taxon 149 str.
67H29BP]
Length = 250
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 91/284 (32%), Positives = 133/284 (46%), Gaps = 42/284 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQIL-----MRALSSPPFKNYQIWW 96
++FV+WN N L +K F D D LQ L P ++ Y ++
Sbjct: 1 MRFVSWNVNGLRAALKKG---FMEAFKELDADAFCLQETKMQEGQAILDLPGYEQY--FY 55
Query: 97 SLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 156
S Y+GTA+ + +P V++ + +++ +GRVI EF YL+ Y PN
Sbjct: 56 SAEKKGYSGTAIFTR--VKPLSVAYGIGIP--EHDHEGRVITMEFNDVYLVTVYTPNA-- 109
Query: 157 KEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 215
K R W+ + F+L K P++ CGDLNV+H EID+ +P
Sbjct: 110 KRALERLDYRMTWEDAFRAFLLDLRAKKPVVVCGDLNVAHTEIDLKNP------------ 157
Query: 216 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGK 274
K + GFT ER +F +L G +D +R L+ D+ ++ WS +
Sbjct: 158 ---KSNRRNAGFTDEERGKFTELLNAG-FVDTFRALY--PDLTGAYTWWSYLRHARETNA 211
Query: 275 RMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF+VSEEL+DRI A E+ +GSDHCPVSL L
Sbjct: 212 GWRIDYFLVSEELRDRIAAAEIHAD------VFGSDHCPVSLTL 249
>gi|210634817|ref|ZP_03298323.1| hypothetical protein COLSTE_02250 [Collinsella stercoris DSM 13279]
gi|210158621|gb|EEA89592.1| exodeoxyribonuclease III [Collinsella stercoris DSM 13279]
Length = 280
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 92/306 (30%), Positives = 140/306 (45%), Gaps = 53/306 (17%)
Query: 36 NSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQ 93
N+ LK +WN N L +K + P F++ ++ D D++ LQ L Y
Sbjct: 3 NTASRTLKLASWNVNGLRAVLKKD-PSFTDIVSELDADILGLQETKLQEGQVEIDLPGYH 61
Query: 94 IWWSLADSK-YAGTALLVKKCFQPKKVSFS----------------LEKTALKYEPDGRV 136
WS A+ K Y+GTA+ + +P V + LE A+ +GRV
Sbjct: 62 QVWSYAERKGYSGTAVFTRD--EPLSVRHADAVLAAGRAAGLTDDQLELVAVA-ATEGRV 118
Query: 137 ILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC---SGKPLIWCGDLNV 193
EFE F+ ++ Y PN + E R WD + F+L +GKP++ CGD NV
Sbjct: 119 CALEFERFWFVDVYTPNA--QGELARLDTRMAWDDAYRAFLLSLEDETGKPVVTCGDFNV 176
Query: 194 SHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHK 253
+H EID+ +P K + G GF+ ER +F +L G D +R
Sbjct: 177 AHNEIDLKNP---------------KSNRGNAGFSDEERSKFVELLDAG-YTDTFR--AA 218
Query: 254 EKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHC 312
D++ +S WS + RIDYF+VS+ + DR+ A ++ +GSDHC
Sbjct: 219 NPDLEGAYSWWSYRFNARKNNAGWRIDYFLVSDSIADRVRATGIRSD------IFGSDHC 272
Query: 313 PVSLEL 318
PV+LE+
Sbjct: 273 PVTLEI 278
>gi|419718967|ref|ZP_14246261.1| exodeoxyribonuclease III [Lachnoanaerobaculum saburreum F0468]
gi|383304836|gb|EIC96227.1| exodeoxyribonuclease III [Lachnoanaerobaculum saburreum F0468]
Length = 252
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 91/282 (32%), Positives = 140/282 (49%), Gaps = 40/282 (14%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLAD 100
K ++WN N L V F +F D D+ +Q L Y +W+ A
Sbjct: 3 KMISWNVNGLRAAVTKG---FLDFFRDIDADIFCIQESKLSEGQIELDLPGYYDYWNYAT 59
Query: 101 SK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEE 159
K Y+G A+ K +P V++ + +++ +GRVI AE++ FYL+ Y PN+ +
Sbjct: 60 KKGYSGVAVFTKD--KPINVTYGIGID--EHDNEGRVITAEYDEFYLITCYTPNS--QRG 113
Query: 160 ENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPN 218
R W+ ++VL+ KP+I+CGDLNV+H+EID+ +P
Sbjct: 114 LTRLDYRMTWEDAFLDYVLKLEEKKPVIFCGDLNVAHKEIDLKNP--------------- 158
Query: 219 KEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM-- 276
K + GFT ER + IL G +D++R L+ +K +SW + +G R K +
Sbjct: 159 KTNRKNAGFTDEERAKMDIILSSG-FVDSFRVLYPDK--TDAYSW-WSYMGGARAKNVGW 214
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYFIVS +LKDRI ++ + GSDHCPV L++
Sbjct: 215 RIDYFIVSAKLKDRIKEAKIHSEVL------GSDHCPVELDI 250
>gi|363889335|ref|ZP_09316698.1| exodeoxyribonuclease [Eubacteriaceae bacterium CM5]
gi|361966758|gb|EHL19645.1| exodeoxyribonuclease [Eubacteriaceae bacterium CM5]
Length = 251
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 89/282 (31%), Positives = 140/282 (49%), Gaps = 38/282 (13%)
Query: 42 LKFVTWNANSL-LLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSL 98
+KFV+WN N L +R K F + FD D LQ L F Y +W+
Sbjct: 1 MKFVSWNVNGLRAVREKG----FEDIFKNFDADAFCLQEIKLQENQIELHFDGYYEYWNY 56
Query: 99 ADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWK 157
A+ K Y+GTA+ K +P V + L +++ +GR+I E+E +Y+ Y PN +
Sbjct: 57 ANKKGYSGTAIYTKH--KPIDVHYGL--GIEEHDMEGRLITLEYENYYIATVYTPNA--Q 110
Query: 158 EEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVP 216
E R+KW+ +E+ + KP+I CGD+NV+H+EID+ +P
Sbjct: 111 PELARLAYRQKWEDDFREYFKKLDEKKPVIICGDMNVAHQEIDLKNP------------- 157
Query: 217 PNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM 276
K + PGF+ ER++F L G ID +R+ + +K + + WS +
Sbjct: 158 --KNNRKNPGFSDEEREKFTMFLNSG-FIDTFRYFYPDKTDEYSW-WSYRFNARKNNAGW 213
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF VS+ LK+++ + + + GSDHCPVS+E+
Sbjct: 214 RIDYFCVSDRLKEKLKSASIH------QDVMGSDHCPVSIEI 249
>gi|162329924|pdb|2O3H|A Chain A, Crystal Structure Of The Human C65a Ape
Length = 285
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 94/316 (29%), Positives = 161/316 (50%), Gaps = 45/316 (14%)
Query: 13 SAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDP 72
+++ PAL D +T+ + K LK +WN + L +K + +++ P
Sbjct: 5 ASEGPALYEDPPDQKTSPSG-----KPATLKIASWNVDGLRAWIKK---KGLDWVKEEAP 56
Query: 73 DVIALQ-------ILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE 124
D++ LQ L L P ++Q W + +D + Y+G LL ++C P KVS+ +
Sbjct: 57 DILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGIG 114
Query: 125 KTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGK 183
+++ +GRVI+AEF++F L+ Y PN G + R++WD+ ++F+ S K
Sbjct: 115 DE--EHDQEGRVIVAEFDSFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRK 170
Query: 184 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 243
PL+ CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L+
Sbjct: 171 PLVLCGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELLQAVP 215
Query: 244 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 303
L D++R L+ F W+ + + R+DYF++S L + +++ +
Sbjct: 216 LADSFRHLYPNTPYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL-- 272
Query: 304 EGFYGSDHCPVSLELS 319
GSDHCP++L L+
Sbjct: 273 ----GSDHCPITLYLA 284
>gi|420469649|ref|ZP_14968365.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-10]
gi|393083481|gb|EJB84186.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-10]
Length = 250
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 90/282 (31%), Positives = 142/282 (50%), Gaps = 38/282 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ ++ +++ +GRVI EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLNVSYGIDIK--EHDKEGRVITCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEF--VLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVP 216
+ R W+ ++F VL+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFKKFLKVLELK-KPVIVCGDLNVAHNEIDLENP------------- 157
Query: 217 PNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM 276
K + GF+ ER++F +L G ID +R+ + K+ + WS + +
Sbjct: 158 --KTNRKNAGFSDEEREKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKDIGW 213
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 214 RIDYFLCSNPLKTRL------KDALIYKNILGSDHCPVGLEL 249
>gi|171915906|ref|ZP_02931376.1| exodeoxyribonuclease III [Verrucomicrobium spinosum DSM 4136]
Length = 250
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 88/284 (30%), Positives = 139/284 (48%), Gaps = 40/284 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPP----FKNYQIWWS 97
+K V+WN N + + E+ +T D DVI LQ ++A+ FK+YQ+ W+
Sbjct: 1 MKLVSWNVNGIRACMDKGLREY---LTACDADVICLQ-EVKAMEEQAGLEWFKDYQVVWN 56
Query: 98 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 156
A K Y+GTA+L ++ + + +++ ++ +GRVI EF +Y++N Y PN
Sbjct: 57 AAQKKGYSGTAILTRQPIKSHAIGMGIDE----HDKEGRVITVEFPDYYVVNVYTPNA-- 110
Query: 157 KEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 215
+ E R WD + ++ KP++ CGDLNV+H EID++ P
Sbjct: 111 QAELARLPYRLLWDDAFRLYLKNLEQTKPVLACGDLNVAHNEIDIARP------------ 158
Query: 216 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 275
KE+ PGF+ ER FG +L+ G +D +R +S+ N G G
Sbjct: 159 ---KENRFSPGFSDQERASFGKLLESG-FVDTFRHFDSRPHQYSWWSYRANARGNNVG-- 212
Query: 276 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
RIDY++ S+ LKD + + I +GSDHCPV L +
Sbjct: 213 WRIDYWLASQGLKDGLKS------SIIRPDIHGSDHCPVELVMG 250
>gi|355668893|gb|AER94340.1| APEX nuclease 1 [Mustela putorius furo]
Length = 317
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 90/293 (30%), Positives = 151/293 (51%), Gaps = 40/293 (13%)
Query: 36 NSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ-------ILMRALSSPP 88
N K LK +WN + L +K + +++ PD++ LQ L L P
Sbjct: 55 NGKSATLKICSWNVDGLRAWIKK---KGLDWVKEEAPDILCLQETKCSENKLPVELQELP 111
Query: 89 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 147
++Q W + +D + Y+G LL ++C P KVS+ + + +++ +GRVI+AEF+ F L+
Sbjct: 112 GLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEFDAFVLV 167
Query: 148 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFF 206
Y PN G + R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 168 TAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG- 224
Query: 207 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 266
NK++ GFT ER+ FG +L+ L D++R L+ F W+
Sbjct: 225 -----------NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTAYAYTF-WTYM 269
Query: 267 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
+ + R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 270 MNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 316
>gi|304439168|ref|ZP_07399086.1| exodeoxyribonuclease III [Peptoniphilus duerdenii ATCC BAA-1640]
gi|304372300|gb|EFM25888.1| exodeoxyribonuclease III [Peptoniphilus duerdenii ATCC BAA-1640]
Length = 254
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 85/281 (30%), Positives = 148/281 (52%), Gaps = 36/281 (12%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPFK--NYQIWWSLAD 100
KFV+WN N + +K F +PD+I LQ + + + Y ++W+ A+
Sbjct: 5 KFVSWNVNGIRAALKKG---FMESFEELNPDIIGLQEIKLSEGQLDLEIPGYHMYWNYAE 61
Query: 101 SK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEE 159
K Y+GTA+ ++ +P VS+ + +++ +GRVI E+ +Y + Y PN+ +
Sbjct: 62 KKGYSGTAVFTRE--EPLSVSYGI--GIEEHDKEGRVITLEYPEYYFITCYTPNS--QRG 115
Query: 160 ENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPN 218
R +W++ E++ + KP++ CGDLNV+H EID+ +PE N
Sbjct: 116 LARLDYRMEWEEAFLEYLNRLDEVKPVVLCGDLNVAHNEIDLKNPE------------SN 163
Query: 219 KEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRI 278
+++ GF+ ER +F +L+ G D +R+L+ +K+ + + WS + R RI
Sbjct: 164 RKN---AGFSDEERDKFTKLLEAG-YTDTFRYLYPDKEDEYSW-WSYFRQARDRNIGWRI 218
Query: 279 DYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
DYF+VS+ L+D+I+ + + GSDHCPVS+EL+
Sbjct: 219 DYFVVSKVLEDKIVEASIH------QNIMGSDHCPVSVELN 253
>gi|182626631|ref|ZP_02954375.1| exodeoxyribonuclease III [Clostridium perfringens D str. JGS1721]
gi|422345838|ref|ZP_16426752.1| exodeoxyribonuclease III (xth) [Clostridium perfringens WAL-14572]
gi|177908025|gb|EDT70604.1| exodeoxyribonuclease III [Clostridium perfringens D str. JGS1721]
gi|373227503|gb|EHP49817.1| exodeoxyribonuclease III (xth) [Clostridium perfringens WAL-14572]
Length = 250
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 88/280 (31%), Positives = 139/280 (49%), Gaps = 38/280 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L VK F ++ + D D+ LQ L + Y +W+ A
Sbjct: 1 MKLISWNVNGLRACVKKG---FLDYFKSEDADIFCLQETKLQEGQIDLDLEGYHQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ KK +P V + + ++ +GRVI EFE F+++ Y PN+ +
Sbjct: 58 EKKGYSGTAIFTKK--EPLNVYYGINME--HHDKEGRVITLEFEDFFMVTVYTPNS--QS 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSGKP-LIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E + R +W+ + ++L+ S K ++ CGDLNV+H+EID+ +P
Sbjct: 112 ELARLEYRMEWEDDFRNYLLELSSKKGVVVCGDLNVAHKEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
K + GFT ER +F +L G ID +R+ + D++ +S WS +
Sbjct: 158 -KTNRKNAGFTDEERDKFSTLLSSG-FIDTFRYFN--PDLEGVYSWWSYRFNARKNNAGW 213
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
RIDYF+VS L+DRI + + GSDHCPV L
Sbjct: 214 RIDYFLVSNNLEDRIKEASIDTEIL------GSDHCPVKL 247
>gi|374583527|ref|ZP_09656621.1| exodeoxyribonuclease III [Desulfosporosinus youngiae DSM 17734]
gi|374419609|gb|EHQ92044.1| exodeoxyribonuclease III [Desulfosporosinus youngiae DSM 17734]
Length = 262
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 139/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPFK--NYQIWWSLA 99
+K ++WN N + VKN F +F D D+ LQ PF Y +W+ A
Sbjct: 1 MKLISWNVNGIRACVKNG---FMDFFLKEDADIFCLQETKIQKEQIPFTLDGYYQYWNFA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ K +P + + + K +++ +GR+I EFE FY++ YAPN+ +
Sbjct: 58 QKKGYSGTAIFSK--IEPLNIVYGMGKE--EHDKEGRLITLEFEKFYVVTVYAPNS--QR 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R KW+ +++ KP+I CGDLNV+H+E+D+ +P
Sbjct: 112 GLARLDYRMKWEDDFLNYIIGLEKCKPVIVCGDLNVAHKEMDLKNPS------------T 159
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
NK++ GFT ER +F ++ +G +D +RF + +K + WS + R
Sbjct: 160 NKKN---AGFTPEERSKFDEVINKG-FVDTFRFFYPDKTQAYTW-WSYMFNARANNAGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF VS ELK ++ + + + GSDHCPV LE+
Sbjct: 215 IDYFCVSAELKSQL------RNAVIYQDVLGSDHCPVGLEI 249
>gi|423311909|ref|ZP_17289846.1| exodeoxyribonuclease III (xth) [Bacteroides vulgatus CL09T03C04]
gi|392689288|gb|EIY82566.1| exodeoxyribonuclease III (xth) [Bacteroides vulgatus CL09T03C04]
Length = 252
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 137/281 (48%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
LKF++WN N L F + + D LQ + F+ Y +W+ A
Sbjct: 2 LKFISWNVNGLRACYDKG---FVDVFHRLEADFFCLQETKMQEGQLDAKFEGYHSYWNYA 58
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K +P V++ L +++ +GRVI E E+FYL+ Y PN+ +E
Sbjct: 59 EKKGYSGTAIFSK--VKPLSVTYGL--GIEEHDHEGRVITLELESFYLITVYTPNS--QE 112
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R KW+ + ++ + KP+I CGDLNV+H+EID+ +P
Sbjct: 113 ELRRLDYRMKWEDDFRAYLKKLEEKKPVIVCGDLNVAHKEIDLKNP-------------- 158
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GFT ER +F +L+ G D +R+ + E++ + WS + + R
Sbjct: 159 -KTNRKNAGFTDEERTKFTTLLESG-FTDTFRYFYPEQEGIYSW-WSYRFKAREKNSGWR 215
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S+ LKDR+ + +GSDHCPV L +
Sbjct: 216 IDYFLTSDSLKDRLKGAHI------YTDIFGSDHCPVELTI 250
>gi|253580808|ref|ZP_04858071.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251847878|gb|EES75845.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 251
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 86/283 (30%), Positives = 138/283 (48%), Gaps = 38/283 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N + + F D D+ LQ + Y +W+ A
Sbjct: 1 MKLISWNVNGIRACIGKG---FEESFAALDADIFCLQETKCQQGQVKLELPGYYQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ + Y+GTA+ KK +P V + + K++ +GRVI E+E FYL+ Y PN+ +
Sbjct: 58 NRRGYSGTAVFTKK--EPLSVVYGI--GIEKHDKEGRVITLEYEKFYLVTVYTPNS--QS 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E + R W++ ++L+ KP+I CGD NV+H+EID+ +P
Sbjct: 112 ELRRLEYRMHWEEDFLAYLLKLQESKPVICCGDFNVAHQEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
K + GFT ER FG +L+ G ID +R+ + D++ +S WS + +
Sbjct: 158 -KTNRKNAGFTDEERACFGKVLESG-FIDTFRYFY--PDVEGRYSWWSYRFKAREKNAGW 213
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
RIDYFI S +LKD++ E+ GSDHCPV L+++
Sbjct: 214 RIDYFITSPQLKDKLKGAEIHSE------IMGSDHCPVELQIT 250
>gi|325913687|ref|ZP_08176049.1| exodeoxyribonuclease III [Lactobacillus iners UPII 60-B]
gi|325477046|gb|EGC80196.1| exodeoxyribonuclease III [Lactobacillus iners UPII 60-B]
Length = 275
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 94/300 (31%), Positives = 138/300 (46%), Gaps = 50/300 (16%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFS------NFITTFDPDVIALQILMRALSSPP------- 88
+ F++WN +SL + + N I +PDV+A+Q + P
Sbjct: 1 MLFISWNIDSLNAALTGDSDRAHETRSVLNKIKEANPDVVAIQETKLRANGPTKKHCDIL 60
Query: 89 ---FKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEF 141
F++YQ W A YAGT L KK + P+ VS+ L + +GR+I EF
Sbjct: 61 ADIFEDYQYVWRSSQEPARKSYAGTMFLYKKNYHPQ-VSYPLIGAPDTMDQEGRIITLEF 119
Query: 142 ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDV 200
+FYL Y PN+G E R WD + QE++ + KP+I GD NV+H+EID+
Sbjct: 120 NSFYLTQVYTPNSG--NELKRLADREIWDTKYQEYLTKLDQNKPVIASGDYNVAHQEIDL 177
Query: 201 SHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCG 260
HPE + GFT ERK F +L G ID +R+++ D+
Sbjct: 178 KHPE---------------TNHHNAGFTDEERKGFSKLLSLG-FIDTFRYIN--GDITDV 219
Query: 261 FSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
+SW I K RIDY++VS+ L D+I +M G DHCP+ L++
Sbjct: 220 YSWWSQRIRTSKTNNSGWRIDYYLVSQRLADKIEQSKMIDTGDR------KDHCPILLKI 273
>gi|312873321|ref|ZP_07733376.1| exodeoxyribonuclease III [Lactobacillus iners LEAF 2052A-d]
gi|311091201|gb|EFQ49590.1| exodeoxyribonuclease III [Lactobacillus iners LEAF 2052A-d]
Length = 275
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 94/300 (31%), Positives = 138/300 (46%), Gaps = 50/300 (16%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFS------NFITTFDPDVIALQILMRALSSPP------- 88
+ F++WN +SL + + N I +PDV+A+Q + P
Sbjct: 1 MLFISWNIDSLNAALTGDSDRAHETRSVLNKIKEANPDVVAIQETKLRANGPTKKHCDIL 60
Query: 89 ---FKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEF 141
F++YQ W A YAGT L KK + P+ VS+ L + +GR+I EF
Sbjct: 61 ADIFEDYQYVWRSSQEPARKSYAGTMFLYKKNYHPQ-VSYPLIGAPDTMDQEGRIITLEF 119
Query: 142 ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDV 200
+FYL Y PN+G E R WD + QE++ + KP+I GD NV+H+EID+
Sbjct: 120 NSFYLTQVYTPNSG--NELKRLADREIWDTKYQEYLTKLDQNKPVIASGDYNVAHQEIDL 177
Query: 201 SHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCG 260
HPE + GFT ERK F +L G ID +R+++ D+
Sbjct: 178 KHPE---------------TNHHNAGFTDEERKGFSKLLSLG-FIDTFRYIN--GDITDV 219
Query: 261 FSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
+SW I K RIDY++VS+ L D+I +M G DHCP+ L++
Sbjct: 220 YSWWSQRIRTSKTNNAGWRIDYYLVSQRLADKIEQSKMIDTGDR------KDHCPILLKI 273
>gi|443631581|ref|ZP_21115762.1| exodeoxyribonuclease III [Bacillus subtilis subsp. inaquosorum KCTC
13429]
gi|443349386|gb|ELS63442.1| exodeoxyribonuclease III [Bacillus subtilis subsp. inaquosorum KCTC
13429]
Length = 252
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 90/284 (31%), Positives = 145/284 (51%), Gaps = 39/284 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ---ILMRALSSPPFKNYQIWWSL 98
+K ++WN N L R +F +++ D D+I LQ I + P + Y ++W+
Sbjct: 1 MKLISWNVNGL--RAVMRKMDFLSYLKEEDADIICLQETKIQDGQVDLQP-EGYHMYWNY 57
Query: 99 ADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWK 157
A K Y+GTA+ K+ +P++V + + +++ +GRVI EFE +++ Y PN K
Sbjct: 58 AVKKGYSGTAVFSKQ--EPQRVMYGI--GIEEHDQEGRVITLEFENMFVMTVYTPNA--K 111
Query: 158 EEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVP 216
R +W++ + ++L+ K P+I CGDLNV+H+EID+ +P
Sbjct: 112 RGLERIDYRMQWEEDLLSYILELDQKKPVILCGDLNVAHQEIDLKNP------------- 158
Query: 217 PNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG-KYRGKR 275
K + GF+ ER F L+ G ID++R H D++ +SW G + R
Sbjct: 159 --KANRNNAGFSDQERGAFTRFLEAG-FIDSFR--HVYPDLEGAYSWWSYRAGARDRNIG 213
Query: 276 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
RIDYF+VSE LKD+I + + GSDHCPV L ++
Sbjct: 214 WRIDYFVVSERLKDQIEDASISADVM------GSDHCPVELMIN 251
>gi|359406465|ref|ZP_09199155.1| exodeoxyribonuclease III [Prevotella stercorea DSM 18206]
gi|357555725|gb|EHJ37349.1| exodeoxyribonuclease III [Prevotella stercorea DSM 18206]
Length = 249
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 92/282 (32%), Positives = 136/282 (48%), Gaps = 39/282 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+KF++WN N L V+ +F T D D LQ + F+ Y +W+ A
Sbjct: 1 MKFISWNVNGLRACVQK---DFEESFRTLDADFFCLQETKMQAGQLDLQFEGYTSYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ + P V++ + +++ +GRVI E E FYL+ Y PN+ ++
Sbjct: 58 EKKGYSGTAIYTRH--TPLSVTYGIGID--EHDHEGRVITLEMEDFYLVTCYTPNS--QD 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R KW+ +++ K P+I CGDLNV+HEEID+ +P
Sbjct: 112 GLRRLDYRMKWEDDFLQYIKGLDAKKPVIVCGDLNVAHEEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
K + GFT E + A L EG ID +R LH + D +S WS + +
Sbjct: 158 -KTNRKNAGFTDEECAKMTAFLGEG-FIDTFRTLHPD---DPTYSWWSYRFKAREKNAGW 212
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYFI SE L++RI + + +GSDHCPV L L
Sbjct: 213 RIDYFITSERLRERITSAAIHNE------VFGSDHCPVELIL 248
>gi|150005146|ref|YP_001299890.1| exodeoxyribonuclease [Bacteroides vulgatus ATCC 8482]
gi|294778957|ref|ZP_06744373.1| exodeoxyribonuclease III [Bacteroides vulgatus PC510]
gi|319642656|ref|ZP_07997302.1| exodeoxyribonuclease [Bacteroides sp. 3_1_40A]
gi|345520248|ref|ZP_08799647.1| exodeoxyribonuclease [Bacteroides sp. 4_3_47FAA]
gi|149933570|gb|ABR40268.1| exodeoxyribonuclease [Bacteroides vulgatus ATCC 8482]
gi|254836074|gb|EET16383.1| exodeoxyribonuclease [Bacteroides sp. 4_3_47FAA]
gi|294447266|gb|EFG15850.1| exodeoxyribonuclease III [Bacteroides vulgatus PC510]
gi|317385744|gb|EFV66677.1| exodeoxyribonuclease [Bacteroides sp. 3_1_40A]
Length = 252
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 137/281 (48%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
LKF++WN N L F + + D LQ + F+ Y +W+ A
Sbjct: 2 LKFISWNVNGLRACYDKG---FVDVFHRLEADFFCLQETKMQEGQLDAKFEGYHSYWNYA 58
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K +P V++ L +++ +GRVI E E+FYL+ Y PN+ +E
Sbjct: 59 EKKGYSGTAIFSK--VKPLSVTYGL--GIEEHDHEGRVITLELESFYLITVYTPNS--QE 112
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R KW+ + ++ + KP+I CGDLNV+H+EID+ +P
Sbjct: 113 ELRRLDYRMKWEDDFRAYLKKLEEKKPVIVCGDLNVAHKEIDLKNP-------------- 158
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GFT ER +F +L+ G D +R+ + E++ + WS + + R
Sbjct: 159 -KTNRKNAGFTDEERAKFTTLLESG-FTDTFRYFYPEQEGIYSW-WSYRFKAREKNSGWR 215
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S+ LKDR+ + +GSDHCPV L +
Sbjct: 216 IDYFLTSDSLKDRLKGAHI------YTDIFGSDHCPVELTI 250
>gi|367462704|gb|ADJ96599.2| DNA repair enzyme APEX-1 [Camelus dromedarius]
Length = 318
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 97/326 (29%), Positives = 164/326 (50%), Gaps = 51/326 (15%)
Query: 6 KPIEKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSN 65
K EKE + + AL D +T+ + K LK +WN + L +K + +
Sbjct: 31 KKTEKEAAGEGAALYEDPPDQKTSPSG-----KSATLKICSWNVDGLRAWIKK---KGLD 82
Query: 66 FITTFDPDVIALQIL----------MRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCF 114
++ PD++ LQ ++ LS P +Q W + +D + Y+G LL ++C
Sbjct: 83 WVKEEAPDILCLQETKCSENKLPPELQELSGLP---HQYWSAPSDKEGYSGVGLLSRQC- 138
Query: 115 QPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQ 174
P KVS+ + + +++ +GRVI+AEF+ F L+ Y PN G + R++WD+ +
Sbjct: 139 -PIKVSYGIGEE--EHDQEGRVIVAEFDAFVLVTVYVPNAG--RGLVRLEYRQRWDEAFR 193
Query: 175 EFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERK 233
+F+ S KPL+ CGDLNV+HEEID+ +P+ NK++ GFT ER+
Sbjct: 194 KFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQ 238
Query: 234 RFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIA 293
FG +L+ L D++R L+ F W+ + + R+DYF++S L +
Sbjct: 239 GFGELLQAVPLADSFRHLYPNTAYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLPALCD 297
Query: 294 CEMQGHGIELEGFYGSDHCPVSLELS 319
+++ + GSDHCP++L L+
Sbjct: 298 SKIRSKAL------GSDHCPITLYLA 317
>gi|421709245|ref|ZP_16148605.1| exodeoxyribonuclease III [Helicobacter pylori R018c]
gi|421722501|ref|ZP_16161760.1| exodeoxyribonuclease III [Helicobacter pylori R056a]
gi|407211802|gb|EKE81667.1| exodeoxyribonuclease III [Helicobacter pylori R018c]
gi|407226285|gb|EKE96051.1| exodeoxyribonuclease III [Helicobacter pylori R056a]
Length = 250
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 141/281 (50%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ ++ +++ +GRV+ EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGIDME--EHDKEGRVVTCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER++F +L +G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEEREKFSELLNDG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKDIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|317503938|ref|ZP_07961946.1| exodeoxyribonuclease III [Prevotella salivae DSM 15606]
gi|315664964|gb|EFV04623.1| exodeoxyribonuclease III [Prevotella salivae DSM 15606]
Length = 250
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 89/282 (31%), Positives = 140/282 (49%), Gaps = 39/282 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+KF++WN N L V +FS + + D LQ + F Y +W+ A
Sbjct: 1 MKFISWNVNGLRACVGK---DFSQSFESLNADFFCLQETKMQAGQLELQFPGYTSYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ +K +P VS+ + +++ +GRVI E++ F+L+ Y PN +E
Sbjct: 58 EKKGYSGTAIYTRK--EPLAVSYGIGID--EHDHEGRVITLEYDKFFLVTVYTPNA--QE 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R W+ Q ++ Q K P+I CGD+NV+H+EID+ +P
Sbjct: 112 ELRRLDYRMTWEDAFQAYLHQLDAKKPVIVCGDMNVAHQEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
K + GFT ER + +L G D +R LH E+ +S WS + +
Sbjct: 158 -KTNRRSAGFTDEERSKMTQLLSNG-FTDTFRTLHPEQ---ITYSYWSYRFRAREKNAGW 212
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF++S+ L+ +++G I E YGSDHCPV L++
Sbjct: 213 RIDYFLISDRLRP-----QLKGASIHTE-IYGSDHCPVELDI 248
>gi|420478325|ref|ZP_14976978.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-34]
gi|393097099|gb|EJB97693.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-34]
Length = 250
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 140/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ ++ +++ +GRVI EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLNVSYGIDME--EHDKEGRVITCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER++F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEEREKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKDIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|420429441|ref|ZP_14928474.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-17]
gi|393044771|gb|EJB45763.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-17]
Length = 250
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 90/282 (31%), Positives = 142/282 (50%), Gaps = 38/282 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ ++ +++ +GRVI EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLNVSYGIDIK--EHDKEGRVITCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEF--VLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVP 216
+ R W+ ++F VL+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFKKFLKVLELK-KPVIVCGDLNVAHNEIDLENP------------- 157
Query: 217 PNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM 276
K + GF+ ER++F +L G ID +R+ + K+ + WS + +
Sbjct: 158 --KTNRKNAGFSDEEREKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKDIGW 213
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 214 RIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|283796572|ref|ZP_06345725.1| exodeoxyribonuclease III [Clostridium sp. M62/1]
gi|291075985|gb|EFE13349.1| exodeoxyribonuclease III [Clostridium sp. M62/1]
gi|295092540|emb|CBK78647.1| exodeoxyribonuclease III [Clostridium cf. saccharolyticum K10]
gi|295115277|emb|CBL36124.1| exodeoxyribonuclease III [butyrate-producing bacterium SM4/1]
Length = 251
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 95/281 (33%), Positives = 136/281 (48%), Gaps = 38/281 (13%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLAD 100
K ++WN N L V F + D D+ +Q L Y +WS AD
Sbjct: 3 KMISWNVNGLRACVGKG---FLDVFRKLDADIFCIQESKLQAGQIDLDIPGYYQYWSYAD 59
Query: 101 SK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEE 159
K Y+GTAL K+ +P V + L A +E GRVI AE+E +Y+L Y PN+ + E
Sbjct: 60 KKGYSGTALFSKE--EPISVVYGLGIDAHDHE--GRVITAEYEDYYVLTCYTPNS--QNE 113
Query: 160 ENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPN 218
R +W+ ++ + KP+I+CGDLNV+H EID+ +P N
Sbjct: 114 LARLPYRMEWEDAFLAYLKKLEEKKPVIFCGDLNVAHREIDLKNPR------------TN 161
Query: 219 KEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMR 277
+++ GFT ER +F A+L G ID YR H D + +S WS + + R
Sbjct: 162 RKN---AGFTDEERGKFSALLDAG-FIDTYR--HFYPDTEGVYSWWSYRFKAREKNAGWR 215
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF VSE L+DR+++ + GSDHCPV L +
Sbjct: 216 IDYFCVSESLEDRLVSASIHTE------IMGSDHCPVELVI 250
>gi|18310156|ref|NP_562090.1| exodeoxyribonuclease III [Clostridium perfringens str. 13]
gi|110802988|ref|YP_698514.1| exodeoxyribonuclease III [Clostridium perfringens SM101]
gi|18144835|dbj|BAB80880.1| 3'-exo-deoxyribonuclease [Clostridium perfringens str. 13]
gi|110683489|gb|ABG86859.1| exodeoxyribonuclease III [Clostridium perfringens SM101]
Length = 250
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 88/280 (31%), Positives = 139/280 (49%), Gaps = 38/280 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L VK F ++ + D D+ LQ L + Y +W+ A
Sbjct: 1 MKLISWNVNGLRACVKKG---FLDYFKSEDADIFCLQETKLQEGQIDLDLEGYHQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ KK +P V + + ++ +GRVI EFE F+++ Y PN+ +
Sbjct: 58 EKKGYSGTAIFTKK--EPLNVYYGINME--HHDKEGRVITLEFEDFFMVTVYTPNS--QS 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSGKP-LIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E + R +W+ + ++L+ S K ++ CGDLNV+H+EID+ +P
Sbjct: 112 ELARLEYRMEWEDDFRNYLLELSSKKGVVVCGDLNVAHKEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
K + GFT ER +F +L G ID +R+ + D++ +S WS +
Sbjct: 158 -KTNRKNAGFTDEERDKFSTLLSSG-FIDTFRYFN--PDLEGIYSWWSYRFNARKNNAGW 213
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
RIDYF+VS L+DRI + + GSDHCPV L
Sbjct: 214 RIDYFLVSNNLEDRIKEASIDTEIL------GSDHCPVKL 247
>gi|420520352|ref|ZP_15018787.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-5b]
gi|425433141|ref|ZP_18813679.1| exodeoxyribonuclease III [Helicobacter pylori GAM100Ai]
gi|393124748|gb|EJC25215.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-5b]
gi|410714293|gb|EKQ71771.1| exodeoxyribonuclease III [Helicobacter pylori GAM100Ai]
Length = 250
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 140/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ ++ +++ +GRVI EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGIDME--EHDKEGRVITCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER++F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEEREKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKDIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|168209710|ref|ZP_02635335.1| exodeoxyribonuclease III [Clostridium perfringens B str. ATCC 3626]
gi|168217871|ref|ZP_02643496.1| exodeoxyribonuclease III [Clostridium perfringens NCTC 8239]
gi|170712212|gb|EDT24394.1| exodeoxyribonuclease III [Clostridium perfringens B str. ATCC 3626]
gi|182380111|gb|EDT77590.1| exodeoxyribonuclease III [Clostridium perfringens NCTC 8239]
Length = 250
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 88/280 (31%), Positives = 139/280 (49%), Gaps = 38/280 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L VK F ++ + D D+ LQ L + Y +W+ A
Sbjct: 1 MKLISWNVNGLRACVKKG---FLDYFKSEDADIFCLQETKLQEGQIDLDLEGYHQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ KK +P V + + ++ +GRVI EFE F+++ Y PN+ +
Sbjct: 58 EKKGYSGTAIFTKK--EPLNVYYGINME--HHDKEGRVITLEFEDFFMVTVYTPNS--QS 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSGKP-LIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E + R +W+ + ++L+ S K ++ CGDLNV+H+EID+ +P
Sbjct: 112 ELARLEYRMEWEDDFRNYLLELSSKKGVVVCGDLNVAHKEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
K + GFT ER +F +L G ID +R+ + D++ +S WS +
Sbjct: 158 -KTNRKNAGFTDEERDKFSTLLSSG-FIDTFRYFN--PDIEGVYSWWSYRFNARKNNAGW 213
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
RIDYF+VS L+DRI + + GSDHCPV L
Sbjct: 214 RIDYFLVSNNLEDRIKEASIDTEIL------GSDHCPVKL 247
>gi|420473317|ref|ZP_14971995.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-19]
gi|420525338|ref|ZP_15023743.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-13b]
gi|393090445|gb|EJB91078.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-19]
gi|393130144|gb|EJC30574.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-13b]
Length = 250
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 140/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ ++ +++ +GRVI EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGIDME--EHDKEGRVITCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER++F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEEREKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKDIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|210617713|ref|ZP_03291707.1| hypothetical protein CLONEX_03931 [Clostridium nexile DSM 1787]
gi|210149155|gb|EEA80164.1| hypothetical protein CLONEX_03931 [Clostridium nexile DSM 1787]
Length = 250
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 91/285 (31%), Positives = 140/285 (49%), Gaps = 44/285 (15%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N + V+ F F D D+ +Q + + Y +W+ A
Sbjct: 1 MKLISWNVNGIRACVQKG---FLEFFQEADADIFCIQESKMQAGQLDLELEGYHQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ KK +P V + + +++ +GRVI EFE FY + Y PN+ +
Sbjct: 58 EKKGYSGTAVFTKK--EPLSVQYGI--GIEEHDKEGRVITLEFEEFYFVTVYTPNS--QS 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG----KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY 214
E R +W+ +F+ G KP+I+ GDLNV++ EID+ +P
Sbjct: 112 ELARLSYRIQWET---DFLAYLKGLEQKKPVIFAGDLNVAYAEIDLKNP----------- 157
Query: 215 VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRG 273
K + GFT ER +FG +LK G ID +R+ + E M+ +S WS + +
Sbjct: 158 ----KTNRKNAGFTDEERAKFGEVLKAG-FIDTFRYFYPE--MEGIYSWWSYRFSARAKN 210
Query: 274 KRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF VSE LKDR+ ++ L GSDHCP+ L+L
Sbjct: 211 AGWRIDYFCVSESLKDRLADAKI------LTDVMGSDHCPIELDL 249
>gi|385219782|ref|YP_005781257.1| exodeoxyribonuclease III [Helicobacter pylori Gambia94/24]
gi|317014940|gb|ADU82376.1| exodeoxyribonuclease III [Helicobacter pylori Gambia94/24]
Length = 250
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 140/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ ++ +++ +GRVI EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGIDIK--EHDKEGRVITCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMNWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER++F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEEREKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKNVGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|357041996|ref|ZP_09103703.1| exodeoxyribonuclease [Prevotella histicola F0411]
gi|355370010|gb|EHG17399.1| exodeoxyribonuclease [Prevotella histicola F0411]
Length = 249
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 86/282 (30%), Positives = 140/282 (49%), Gaps = 39/282 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L V +F D D +Q + F Y+ +W+ A
Sbjct: 1 MKLISWNVNGLRACVGK---DFEQQFKDLDADFFCIQETKMQDGQLDISFPGYESYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K +P VS+ ++ +++ +GRVI E + F+L+ Y PN+ ++
Sbjct: 58 EKKGYSGTAIFTKH--KPLSVSYGIDIE--EHDHEGRVITLEMDDFFLVTVYTPNS--QD 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R KW+ Q ++ + K P+I CGD+NV+HEEID+ +P
Sbjct: 112 GLRRLEYRMKWEDDFQAYLHKLDAKKPVIVCGDMNVAHEEIDIKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
K + GFT ER++ +L G ID +R L+ E+ +S WS + R
Sbjct: 158 -KTNRRNAGFTDEEREKMTQLLNNG-FIDTFRSLYPEQ---VTYSWWSYRFRARERNTGW 212
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF++S+ LKDR++ ++ GSDHCPV ++L
Sbjct: 213 RIDYFLISDRLKDRLVDAKIHTE------IMGSDHCPVEVDL 248
>gi|269123555|ref|YP_003306132.1| exodeoxyribonuclease III Xth [Streptobacillus moniliformis DSM
12112]
gi|268314881|gb|ACZ01255.1| exodeoxyribonuclease III Xth [Streptobacillus moniliformis DSM
12112]
Length = 251
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 86/281 (30%), Positives = 140/281 (49%), Gaps = 36/281 (12%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPFK--NYQIWWSLAD 100
K+++WN N L +K F ++ P++I LQ + + + Y +++ A+
Sbjct: 3 KYISWNVNGLRACIKKG---FLDYFNEQKPNIIGLQEIKMSEGQLDLELEGYYTYYNYAE 59
Query: 101 SK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEE 159
K Y+GTA+ +P VS+ + +++ +GRVI AEFE +Y + Y PN+ K E
Sbjct: 60 KKGYSGTAIFTD--VEPISVSYGI--GIEEHDKEGRVITAEFEDYYFVTVYTPNS--KNE 113
Query: 160 ENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPN 218
R W+ + ++ + KP+I CGDLNV+H+EID+ +P
Sbjct: 114 LERLDYRMIWEDEFRSYLKKLEEKKPVIVCGDLNVAHKEIDLKNP--------------- 158
Query: 219 KEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRI 278
K + GFTI ER +F +++ G ID +R+ + +K + WS + RI
Sbjct: 159 KSNTRSAGFTIEERNKFTELIENG-FIDTFRYFYPDKIHAYSW-WSYRGNARKNNTGWRI 216
Query: 279 DYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
DYF VS LKDR++ E+ + GSDHCPV L ++
Sbjct: 217 DYFCVSSSLKDRLVDAEIH------DKVEGSDHCPVVLYIN 251
>gi|154502978|ref|ZP_02040038.1| hypothetical protein RUMGNA_00800 [Ruminococcus gnavus ATCC 29149]
gi|153796517|gb|EDN78937.1| exodeoxyribonuclease III [Ruminococcus gnavus ATCC 29149]
Length = 250
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 89/281 (31%), Positives = 139/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N + V+ F F D D+ LQ L + Y+ +W+ A
Sbjct: 1 MKLISWNVNGIRACVQKG---FLEFFREADADIFCLQETKLQAGQIELDLEGYEQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ KK +P V++ + +++ +GRVI EFE FY + Y PN+ +
Sbjct: 58 VKKGYSGTAVFTKK--KPLNVTYGI--GIEEHDQEGRVITLEFEEFYFVTVYTPNS--QN 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R KW+ ++ + KP+I+CGDLNV+H+EID+ +P
Sbjct: 112 ELARLDYRMKWESDFLAYLKKLEEEKPVIFCGDLNVAHKEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GFT ER +F +L G ID +R+ + +++ + WS + + R
Sbjct: 158 -KTNRKNAGFTDEERGKFTEMLNAG-FIDTFRYFYPDQEGIYSW-WSYRFSARAKNAGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF VSE LKDR+ ++ L GSDHCP+ L+L
Sbjct: 215 IDYFCVSECLKDRLADAKI------LTDVMGSDHCPIELDL 249
>gi|420410840|ref|ZP_14909976.1| exodeoxyribonuclease III [Helicobacter pylori NQ4200]
gi|393026053|gb|EJB27153.1| exodeoxyribonuclease III [Helicobacter pylori NQ4200]
Length = 250
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 140/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ ++ +++ +GRV+ EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGIDME--EHDKEGRVVTCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER++F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEEREKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKNIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|153853826|ref|ZP_01995182.1| hypothetical protein DORLON_01173 [Dorea longicatena DSM 13814]
gi|149753576|gb|EDM63507.1| exodeoxyribonuclease III [Dorea longicatena DSM 13814]
Length = 250
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 93/285 (32%), Positives = 142/285 (49%), Gaps = 44/285 (15%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ-ILMRA----LSSPPFKNYQIWW 96
+KF++WN N + + F + D D+ +Q M+A L +P + Y W
Sbjct: 1 MKFISWNVNGIRACAQKG---FMDIFNEADADIFCIQESKMQAGQLELDTPGYHQY---W 54
Query: 97 SLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNG 155
+ A+ K Y+GTA+ K+ +P VS+ L +++ +GRVI EFE FY + Y PN+
Sbjct: 55 NYAERKGYSGTAIFTKE--EPLSVSYGL--GIEEHDKEGRVITLEFEDFYFITVYTPNS- 109
Query: 156 WKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY 214
+ E R +W+ ++ + KP+I+CGDLNV+H+EID+ +P
Sbjct: 110 -QSELARLDYRMRWEDAFLAYLKKLEEKKPVIFCGDLNVAHKEIDLKNP----------- 157
Query: 215 VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRG 273
K + GFT ER +F +L G ID +R+ + D + +S WS + +
Sbjct: 158 ----KTNRKNAGFTDEERGKFTNLLNAG-FIDTFRYFY--PDAEGIYSWWSYRFSARKKN 210
Query: 274 KRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF VSE LKDRI ++ L GSDHCPV L+
Sbjct: 211 AGWRIDYFCVSESLKDRIKDAKI------LTEIMGSDHCPVELDF 249
>gi|351701700|gb|EHB04619.1| DNA-(apurinic or apyrimidinic site) lyase [Heterocephalus glaber]
Length = 318
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 93/320 (29%), Positives = 163/320 (50%), Gaps = 45/320 (14%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
EKE + P L D +T+ + K LK +WN + L +K + +++
Sbjct: 34 EKEAAGDGPVLYEDPPDKKTSPSG-----KSATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQILMRALSSPPFK-------NYQIWWSLADSK-YAGTALLVKKCFQPKKVS 120
PD++ LQ + + P + ++Q W + +D + Y+G LL ++C P KV+
Sbjct: 86 EEAPDILCLQETKCSENKLPAELQELSGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVT 143
Query: 121 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ- 179
+ + + +++ +GRVI+AEF++F L+ Y PN G + R++WD+ ++F+
Sbjct: 144 YGIGEE--EHDQEGRVIVAEFDSFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGL 199
Query: 180 CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 239
S KPL+ CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L
Sbjct: 200 ASRKPLVLCGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELL 244
Query: 240 KEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGH 299
+ L D++R L+ F W+ + + R+DYF++S L + +++
Sbjct: 245 QAVPLTDSFRHLYPNAAYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSK 303
Query: 300 GIELEGFYGSDHCPVSLELS 319
+ GSDHCP++L L+
Sbjct: 304 AL------GSDHCPITLYLA 317
>gi|260808574|ref|XP_002599082.1| hypothetical protein BRAFLDRAFT_225146 [Branchiostoma floridae]
gi|229284358|gb|EEN55094.1| hypothetical protein BRAFLDRAFT_225146 [Branchiostoma floridae]
Length = 272
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 99/293 (33%), Positives = 147/293 (50%), Gaps = 52/293 (17%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ-------ILMRALSSPPFKNYQI 94
LK +WN + L VK N +I DPD+I LQ + + ++ +
Sbjct: 14 LKIASWNVDGLRGTVKKNG---HAYIPQEDPDIICLQETKCTEKDVPKEFTATVEGYHGY 70
Query: 95 WWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPN 153
W+S + K YAGTALL K +P KV++ + +++ +GRVI AEF+ FY++ Y PN
Sbjct: 71 WYSPTEKKGYAGTALLSKT--KPIKVTYGI--GVDEHDDEGRVITAEFDDFYMVTAYVPN 126
Query: 154 NGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLN 212
G R WD+ ++ + K P++ CGDLNV+H EID+ +P+
Sbjct: 127 AG--RGLVRLDYRGTWDEAFTAYLKKLDKKKPVVLCGDLNVAHNEIDLKNPK-------- 176
Query: 213 GYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYR 272
NK PGFT ER+ F +L EG D+YR L+ E + DC WS +G R
Sbjct: 177 ----GNKNK--TPGFTDKEREGFTTLLDEG-FKDSYRELYPE-ETDCYTFWS--YMGGAR 226
Query: 273 GKRM--RIDYFIVSE----ELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
K + R+DYF++S+ +L D +I E+ GSDHCP+ L L+
Sbjct: 227 AKNVGWRLDYFVLSDRLMPQLCDNVIRSEVM----------GSDHCPIVLLLA 269
>gi|293376523|ref|ZP_06622751.1| exodeoxyribonuclease III [Turicibacter sanguinis PC909]
gi|292644749|gb|EFF62831.1| exodeoxyribonuclease III [Turicibacter sanguinis PC909]
Length = 251
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 137/281 (48%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+KF++WN N L VK F +F+ PD + +Q L Y +W+ A
Sbjct: 1 MKFISWNVNGLRACVKKG---FLDFVEAEQPDFLCVQETKLQEGQIDLQLDGYYQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ K +P +V++ L +++ +GRVI E+ FYL+ Y PN+ +
Sbjct: 58 VKKGYSGTAIFTKH--EPLQVTYGL--NIAEHDQEGRVITLEYNDFYLVTVYTPNS--QN 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R W++ + +++ KP+I CGDLNV+H++ID+ +P
Sbjct: 112 ELARLDYRLTWEEAFRNYLIGLDVLKPVIVCGDLNVAHQQIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GFTI ER +L G ID +R+ + K+ +C WS + + R
Sbjct: 158 -KTNTKNAGFTIEERNEMTKLLNSG-FIDTFRYFYPTKE-NCYSWWSYRAGARAKNVGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYFI S+ L+ R+ + + GSDHCPV L+L
Sbjct: 215 IDYFITSKALESRLEDARIYPDVL------GSDHCPVGLQL 249
>gi|315652833|ref|ZP_07905807.1| exodeoxyribonuclease III [Lachnoanaerobaculum saburreum DSM 3986]
gi|315485035|gb|EFU75443.1| exodeoxyribonuclease III [Lachnoanaerobaculum saburreum DSM 3986]
Length = 259
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 91/285 (31%), Positives = 140/285 (49%), Gaps = 40/285 (14%)
Query: 40 DPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWS 97
D K ++WN N L V F +F D D+ +Q L Y +W+
Sbjct: 7 DMKKMISWNVNGLRAAVTKG---FLDFFRDIDADIFCIQESKLSEGQIELDLPGYYDYWN 63
Query: 98 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 156
A K Y+G A+ K +P V++ + +++ +GRVI AE++ FYL+ Y PN+
Sbjct: 64 YATKKGYSGVAVFTKD--KPINVTYGIGID--EHDNEGRVITAEYDEFYLITCYTPNS-- 117
Query: 157 KEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 215
+ R W+ ++ L+ KP+I+CGDLNV+H+EID+ +P
Sbjct: 118 QRGLTRLDYRMTWEDAFLDYALKLEEKKPVIFCGDLNVAHKEIDLKNP------------ 165
Query: 216 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 275
K + GFT ER + IL G +D++R L+ +K +SW + +G R K
Sbjct: 166 ---KTNRKNAGFTDEERAKMDIILSSG-FVDSFRLLYPDK--TDAYSW-WSYMGGARAKN 218
Query: 276 M--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
+ RIDYFIVS +LKDRI ++ + GSDHCPV L++
Sbjct: 219 VGWRIDYFIVSAKLKDRIKEAKIHSEVL------GSDHCPVELDI 257
>gi|402312986|ref|ZP_10831909.1| exodeoxyribonuclease III [Lachnospiraceae bacterium ICM7]
gi|400367562|gb|EJP20578.1| exodeoxyribonuclease III [Lachnospiraceae bacterium ICM7]
Length = 258
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 91/282 (32%), Positives = 138/282 (48%), Gaps = 40/282 (14%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLAD 100
K ++WN N L V F +F D D+ +Q L Y +W+ A
Sbjct: 9 KMISWNVNGLRAAVTKG---FLDFFRDIDADIFCIQESKLSEGQIELDLPGYYDYWNYAQ 65
Query: 101 SK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEE 159
K Y+G A+ K +P V++ + +++ +GRVI AE+E FYL+ Y PN+ +
Sbjct: 66 KKGYSGVAVFTKD--KPLNVTYGI--GIEEHDNEGRVITAEYEDFYLITCYTPNS--QRG 119
Query: 160 ENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPN 218
R W+ ++L+ KP+I+CGDLNV+H+EID+ +P
Sbjct: 120 LTRLDYRMTWEDAFLSYILKLEEKKPVIFCGDLNVAHKEIDLKNP--------------- 164
Query: 219 KEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM-- 276
K + GFT ER + IL G D++R L+ +K +SW + +G R K +
Sbjct: 165 KTNRKNAGFTDEERGKMDVILTSG-FCDSFRVLYPDKTD--AYSW-WSYMGGARAKNVGW 220
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYFIVS++LKDRI ++ GSDHCPV L++
Sbjct: 221 RIDYFIVSDKLKDRIKEAKIHSD------ILGSDHCPVELDI 256
>gi|323141860|ref|ZP_08076721.1| exodeoxyribonuclease III [Phascolarctobacterium succinatutens YIT
12067]
gi|322413607|gb|EFY04465.1| exodeoxyribonuclease III [Phascolarctobacterium succinatutens YIT
12067]
Length = 236
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 85/261 (32%), Positives = 136/261 (52%), Gaps = 36/261 (13%)
Query: 63 FSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKV 119
F+ F+ PD+I LQ + R + F Y+ +W+ A+ K Y+GTA+ K +P V
Sbjct: 5 FAEFLQEAAPDIICLQETKMQREQADFVFPGYEEYWNSAERKGYSGTAVFTK--VKPLAV 62
Query: 120 SFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ 179
++ L + +++ +GRVI EF +FYL+ Y PN+ K+ R W+ + ++ +
Sbjct: 63 TYGLGQE--EHDKEGRVITLEFASFYLVTVYTPNS--KDGLARLDYRMVWEDVFRAYLQE 118
Query: 180 CSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAI 238
K P++ CGDLNV+ EEID+ +P K + GFT ER +F
Sbjct: 119 LDAKKPVVVCGDLNVAAEEIDLKNP---------------KTNRRNAGFTDEERAKFRE- 162
Query: 239 LKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQ 297
LK D++R+LH E + +S WS + + RIDYF+VS+ + D++ + E+
Sbjct: 163 LKAAGFTDSFRYLHPE---EVKYSWWSYRFKAREKNAGWRIDYFVVSDRIADKLQSAEIH 219
Query: 298 GHGIELEGFYGSDHCPVSLEL 318
+GSDHCPVS+EL
Sbjct: 220 NE------VFGSDHCPVSIEL 234
>gi|429741842|ref|ZP_19275492.1| exodeoxyribonuclease III [Porphyromonas catoniae F0037]
gi|429158090|gb|EKY00657.1| exodeoxyribonuclease III [Porphyromonas catoniae F0037]
Length = 250
Score = 123 bits (309), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 84/281 (29%), Positives = 136/281 (48%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+KF++WN N L +PE I D D + LQ + +Y +W+ A
Sbjct: 1 MKFISWNVNGLRAVFGKGFPEI---IQGLDADFVCLQETKMQAGQLEADLPSYHTYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ + +P VS+ + ++ +GRVI E+ FYL+ Y PN+ ++
Sbjct: 58 EKKGYSGTAIYTRH--EPLSVSYGIGID--HHDTEGRVITLEYTDFYLVTVYVPNS--QD 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ + ++++ K P+I CGDLNV+H+EID+ +P
Sbjct: 112 DLRRLGYRMTWEDDFRAYLVELDKKKPVIVCGDLNVAHQEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GFT ER +F +L G ID +R+ H ++ D WS + R R
Sbjct: 158 -KSNRRNAGFTDEERGKFQELLDAG-FIDTFRYFHPDQ-RDIYSWWSYRFKARERNSGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S+ L ++ + ++ +GSDHCPV L L
Sbjct: 215 IDYFVTSQRLAPQLASAKIHTE------IFGSDHCPVELVL 249
>gi|420431269|ref|ZP_14930290.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-20]
gi|393044260|gb|EJB45254.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-20]
Length = 250
Score = 123 bits (309), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 139/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ + +++ +GRVI EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGINME--EHDKEGRVITCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER++F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEEREKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARNKDIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|303237381|ref|ZP_07323951.1| exodeoxyribonuclease III [Prevotella disiens FB035-09AN]
gi|302482768|gb|EFL45793.1| exodeoxyribonuclease III [Prevotella disiens FB035-09AN]
Length = 250
Score = 123 bits (309), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 89/283 (31%), Positives = 142/283 (50%), Gaps = 39/283 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+KF++WN N L V + E I D D LQ + F Y+ +W+ A
Sbjct: 1 MKFISWNVNGLRACVTKGFKESFEAI---DADFFCLQETKMQAGQLDIAFDGYESYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K QP V++ L +++ +GRVI E E FYL+ Y PN+ ++
Sbjct: 58 EKKGYSGTAIFTKH--QPLNVTYGL--GIEEHDHEGRVITLEMENFYLVTCYTPNS--QD 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R +W+ Q ++ + KP+I CGDLNV+HEEID+ +P
Sbjct: 112 GLKRLEYRMRWEDDFQTYIKRLDEKKPVIVCGDLNVAHEEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
K + GF+ ER + L +G ID++R L+ E+ +S WS + +
Sbjct: 158 -KTNRKNAGFSDEERAKMTQFLGKG-FIDSFRTLYPEQ---VTYSWWSYRFKAREKNAGW 212
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
RIDYF++S+ L+ +++ ++ YGSDHCPV +EL+
Sbjct: 213 RIDYFLLSDRLRAQLVDAKIHTE------VYGSDHCPVEVELN 249
>gi|420444585|ref|ZP_14943505.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-41]
gi|393058222|gb|EJB59115.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-41]
Length = 250
Score = 123 bits (309), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 140/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ ++ +++ +GRVI EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGIDIK--EHDKEGRVITCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER++F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEEREKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKDIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKNILGSDHCPVGLEL 249
>gi|315606307|ref|ZP_07881323.1| exodeoxyribonuclease III [Prevotella buccae ATCC 33574]
gi|315251998|gb|EFU31971.1| exodeoxyribonuclease III [Prevotella buccae ATCC 33574]
Length = 249
Score = 123 bits (309), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 87/282 (30%), Positives = 137/282 (48%), Gaps = 39/282 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
++F++WN N L V F D D LQ + + F+ Y +W+ A
Sbjct: 1 MRFISWNVNGLRACVSKG---FEESFKALDADFFCLQETKMQEGQLNLQFEGYDSYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K +P V++ L +++ +GRVI E E FYL+ Y PN+ ++
Sbjct: 58 EKKGYSGTAIYTKH--KPLNVTYGL--GIEEHDHEGRVITLEMEDFYLITVYTPNS--QD 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R W+ +++ K P+I CGDLNV+HEEID+ +P
Sbjct: 112 ELRRLNYRMTWEDDFLKYIQGLDAKKPVIVCGDLNVAHEEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
K + GFT ER++ L G D++R+ + E+ +S WS + +
Sbjct: 158 -KTNRRNAGFTDEEREKMTITLNSG-FTDSFRYKYPEQ---VTYSWWSYRFHAREKNAGW 212
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF++S L+DR++ ++ YGSDHCPV L+L
Sbjct: 213 RIDYFLISNRLRDRLVDAKIHTE------VYGSDHCPVELDL 248
>gi|15646134|ref|NP_208316.1| exodeoxyribonuclease III [Helicobacter pylori 26695]
gi|410024766|ref|YP_006894019.1| exodeoxyribonuclease III [Helicobacter pylori Rif1]
gi|410502530|ref|YP_006937057.1| exodeoxyribonuclease III [Helicobacter pylori Rif2]
gi|410683049|ref|YP_006935451.1| exodeoxyribonuclease III [Helicobacter pylori 26695]
gi|419417169|ref|ZP_13957646.1| exodeoxyribonuclease III [Helicobacter pylori P79]
gi|2314703|gb|AAD08563.1| exodeoxyribonuclease (lexA) [Helicobacter pylori 26695]
gi|384373631|gb|EIE29102.1| exodeoxyribonuclease III [Helicobacter pylori P79]
gi|409894690|gb|AFV42748.1| exodeoxyribonuclease III [Helicobacter pylori 26695]
gi|409896423|gb|AFV44345.1| exodeoxyribonuclease III [Helicobacter pylori Rif1]
gi|409898081|gb|AFV45935.1| exodeoxyribonuclease III [Helicobacter pylori Rif2]
Length = 250
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 139/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ + +++ +GRVI EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGINME--EHDKEGRVITCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER++F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEEREKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKNIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|420420653|ref|ZP_14919737.1| exodeoxyribonuclease III [Helicobacter pylori NQ4161]
gi|393035452|gb|EJB36496.1| exodeoxyribonuclease III [Helicobacter pylori NQ4161]
Length = 250
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 140/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ ++ +++ +GRVI EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGIDME--EHDKEGRVITCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMNWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER++F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEEREKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARNKDIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDTLGSDHCPVGLEL 249
>gi|357060646|ref|ZP_09121414.1| exodeoxyribonuclease [Alloprevotella rava F0323]
gi|355375951|gb|EHG23219.1| exodeoxyribonuclease [Alloprevotella rava F0323]
Length = 259
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 86/287 (29%), Positives = 141/287 (49%), Gaps = 38/287 (13%)
Query: 37 SKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQI 94
+ K +KF++WN N L + F + D D LQ + F+ Y+
Sbjct: 5 TYKKRMKFISWNVNGLR---ACDGKGFRDAFRNLDADFFCLQETKMQAGQLDIDFEGYES 61
Query: 95 WWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPN 153
+W+ A+ K Y+GTA+ K P V++ L +++ +GRVI E + F+L+ Y PN
Sbjct: 62 YWNYAEKKGYSGTAIFTKH--HPLNVTYGLGHE--EHDHEGRVITLEMDNFFLITVYTPN 117
Query: 154 NGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLN 212
+ ++E R W+ +E++L+ + K P+I CGDLNV+H+EID+ +P
Sbjct: 118 S--QDELRRLDYRMTWEDAFREYLLELNKKKPVIVCGDLNVAHQEIDLKNP--------- 166
Query: 213 GYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKY 271
K + GFT ER++ +L G D +RF + D+ +S WS +
Sbjct: 167 ------KTNRRNAGFTDEEREKMTQLLNAG-FTDTFRFFN--PDLTGAYSWWSYRFRARE 217
Query: 272 RGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
+ RIDYF+VS L D++++ + +GSDHCPV + L
Sbjct: 218 KNAGWRIDYFLVSNCLNDKLVSASIHNE------IFGSDHCPVEIVL 258
>gi|288927024|ref|ZP_06420917.1| exodeoxyribonuclease III [Prevotella buccae D17]
gi|288336198|gb|EFC74586.1| exodeoxyribonuclease III [Prevotella buccae D17]
Length = 249
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 87/282 (30%), Positives = 137/282 (48%), Gaps = 39/282 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
++F++WN N L V F D D LQ + + F+ Y +W+ A
Sbjct: 1 MRFISWNVNGLRACVSKG---FEESFKALDADFFCLQETKMQEGQLNLQFEGYDSYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K +P V++ L +++ +GRVI E E FYL+ Y PN+ ++
Sbjct: 58 EKKGYSGTAIYTKH--KPLNVTYGL--GIEEHDHEGRVITLEMEDFYLITVYTPNS--QD 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R W+ +++ K P+I CGDLNV+HEEID+ +P
Sbjct: 112 ELRRLDYRMTWEDDFLKYIQGLDAKKPVIVCGDLNVAHEEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
K + GFT ER++ L G D++R+ + E+ +S WS + +
Sbjct: 158 -KTNRRNAGFTDEEREKMTITLNSG-FTDSFRYKYPEQ---VTYSWWSYRFHAREKNAGW 212
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF++S L+DR++ ++ YGSDHCPV L+L
Sbjct: 213 RIDYFLISNRLRDRLVDAKIHTE------VYGSDHCPVELDL 248
>gi|291561139|emb|CBL39938.1| exodeoxyribonuclease III [butyrate-producing bacterium SS3/4]
Length = 284
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 86/303 (28%), Positives = 152/303 (50%), Gaps = 39/303 (12%)
Query: 20 SPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ- 78
+P + G + +E+ S K K ++WN N L + F ++ D D+ +Q
Sbjct: 16 NPEQSGGRKSAIETEKLSMK---KMISWNVNGLRACLGKG---FLEYLKESDADIFCIQE 69
Query: 79 -ILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRV 136
L Y +W+ A+ K Y+GTA+ K+ +P V++ L +++ +GRV
Sbjct: 70 SKLQEGQVDLELPGYHQYWNYAEKKGYSGTAMFTKE--EPIAVTYGL--GIEEHDHEGRV 125
Query: 137 ILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSH 195
I AEF +Y++ Y PN+ ++ R +W+ + ++ + + KP+I+CGDLNV+H
Sbjct: 126 ITAEFPEYYVVTCYTPNS--QDGLKRLDYRMQWEDAFRAYLKELETKKPVIFCGDLNVAH 183
Query: 196 EEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEK 255
+EID+ +P K + GF+ ER +F +L+ G +D +R+ + ++
Sbjct: 184 QEIDLKNP---------------KTNRKNAGFSDEERAKFTELLEAG-FVDTFRYFYPDQ 227
Query: 256 DMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVS 315
+ + WS + + RIDYF VSE LKDR++ ++ + GSDHCPV
Sbjct: 228 EGIYSW-WSYRFSARAKNAGWRIDYFCVSESLKDRLVDAKIHTEVM------GSDHCPVE 280
Query: 316 LEL 318
L++
Sbjct: 281 LDI 283
>gi|420456020|ref|ZP_14954844.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-14]
gi|393071140|gb|EJB71927.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-14]
Length = 250
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 139/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ + +++ +GRVI EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGI--NIEEHDKEGRVITCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER++F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEEREKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARNKNIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|164688495|ref|ZP_02212523.1| hypothetical protein CLOBAR_02140 [Clostridium bartlettii DSM
16795]
gi|164602908|gb|EDQ96373.1| exodeoxyribonuclease III [Clostridium bartlettii DSM 16795]
Length = 252
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 84/283 (29%), Positives = 144/283 (50%), Gaps = 36/283 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+KF++WN N + V F +F D D+ LQ L Y +W+ A
Sbjct: 1 MKFISWNVNGIRACVTKG---FLDFFNEVDADIFCLQETKLQEGQIELDLPGYHQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K+ +P V++ ++ +++ +GRVI EF+ FY + Y PN+ +
Sbjct: 58 EKKGYSGTAIFTKQ--EPISVNYGIQ--IEEHDKEGRVITLEFDNFYFVTVYTPNS--QS 111
Query: 159 EENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R KW+ ++++L+ S K +I CGDLNV+H+EID+ +P
Sbjct: 112 ELKRLDYRMKWEDDFRKYLLKLNSKKGVIVCGDLNVAHKEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GFT ER++F +L+ G ID YR + +K+ + WS + + R
Sbjct: 158 -KTNRKNAGFTDQEREKFTELLESG-FIDTYRHFNPDKEGIYSW-WSYRFKAREKNAGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 320
IDYF S++L++ +++ ++ + GSDHCP+ L + +
Sbjct: 215 IDYFCASKDLENNLVSADIHTQIL------GSDHCPIELVVKD 251
>gi|405982630|ref|ZP_11040941.1| exodeoxyribonuclease III (xth) [Slackia piriformis YIT 12062]
gi|404389339|gb|EJZ84415.1| exodeoxyribonuclease III (xth) [Slackia piriformis YIT 12062]
Length = 285
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 97/316 (30%), Positives = 139/316 (43%), Gaps = 72/316 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
++FV+WN N L VK F + D D+IALQ L Y +WS A
Sbjct: 1 MRFVSWNVNGLRAAVKKG---FEESVAALDADIIALQETKLQEGQIDLSLPGYFQFWSYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ ++ +P + L +AL E GR++ EF+ ++ ++ Y PN +
Sbjct: 58 ERKGYSGTAVFCRQ--KPLRALHGLGDSALDDE--GRIVALEFDDYWFVDVYTPNA--QN 111
Query: 159 EENSFQRRRKWDKRIQEF--------------VLQC---------------------SGK 183
E R WD ++F V C S K
Sbjct: 112 ELARIDHRMAWDDAFRDFCKNLEKGAIPAGVAVQDCAEGEGHVSISELPLTQEGERTSAK 171
Query: 184 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 243
P++ CGD NV+H+EID+ +P PN+ G GF+ ER++F +L G
Sbjct: 172 PVVMCGDFNVAHQEIDLKNP------------GPNR---GNAGFSDEEREKFTRLLDAG- 215
Query: 244 LIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIE 302
+D +R LH D +S WS + RIDYF+VSE L+D I M
Sbjct: 216 FVDTFRVLH--PDEAGAYSWWSYRFNARKNNAGWRIDYFLVSESLRDAIHDARMHAD--- 270
Query: 303 LEGFYGSDHCPVSLEL 318
GSDHCPVS+EL
Sbjct: 271 ---IMGSDHCPVSVEL 283
>gi|282858966|ref|ZP_06268104.1| exodeoxyribonuclease III [Prevotella bivia JCVIHMP010]
gi|424898885|ref|ZP_18322433.1| exodeoxyribonuclease III [Prevotella bivia DSM 20514]
gi|282588246|gb|EFB93413.1| exodeoxyribonuclease III [Prevotella bivia JCVIHMP010]
gi|388593595|gb|EIM33832.1| exodeoxyribonuclease III [Prevotella bivia DSM 20514]
Length = 249
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 87/282 (30%), Positives = 137/282 (48%), Gaps = 39/282 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+KF++WN N L V N F D D LQ + F Y+ +W+ A
Sbjct: 1 MKFISWNVNGLRACVGKN---FKEDFAALDADFFCLQETKMQEGQLDLSFPGYESYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
D K Y+GTA+ K +P V+ + +++ +GRVI E + FYL+ Y PN+ ++
Sbjct: 58 DKKGYSGTAIFTKH--KPLTVTTGIGID--EHDHEGRVITLEMDDFYLVTVYTPNS--QD 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R +W+ Q ++ + KP+I CGD+NV+HEEID+ +P
Sbjct: 112 ELKRLAYRMQWETDFQAYLHKLDEHKPVIVCGDMNVAHEEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
K + GF+ ER++ +L G D +R+L+ E+ +S WS + +
Sbjct: 158 -KTNHHNAGFSDEEREKMTILLNNG-FTDTFRYLYPEQ---VTYSWWSYRFKAREKNTGW 212
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF++S L+DR+ ++ +GSDHCPV L L
Sbjct: 213 RIDYFLISNRLRDRLKDAKIHTE------IFGSDHCPVELTL 248
>gi|375091411|ref|ZP_09737704.1| exodeoxyribonuclease III (xth) [Helcococcus kunzii ATCC 51366]
gi|374563511|gb|EHR34824.1| exodeoxyribonuclease III (xth) [Helcococcus kunzii ATCC 51366]
Length = 250
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 91/282 (32%), Positives = 146/282 (51%), Gaps = 38/282 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +I DPD+I LQ L + Y +++ A
Sbjct: 1 MKLISWNVNGLRAVMNKG---FMEYIEQEDPDIICLQEIKLAKGQLEVDLPQYHEFYNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ + Y+GTA+ K+ +P S+ + +++ +GRVI E+E FYL+ Y PN+ K
Sbjct: 58 ERRGYSGTAIFTKE--EPLSHSYGI--GIEEHDKEGRVITLEYEDFYLVTCYTPNS--KR 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R+ W+ + ++L+ + KP+I CGDLNV+H+EID+++P
Sbjct: 112 GLLRLDYRQVWEDDFRNYLLKLNKTKPVILCGDLNVAHKEIDLANP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
K + GFT ER++F +L G ID +R+ + D+ +S WS + R
Sbjct: 158 -KSNRRNAGFTDEERQKFTELLDAG-FIDTFRYFY--PDIPEMYSWWSYITKARERNVGW 213
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF+VSE+ +DR++ + +E E GSDHCPV L L
Sbjct: 214 RIDYFVVSEDFEDRLLDASIH---MEQE---GSDHCPVVLYL 249
>gi|329120913|ref|ZP_08249545.1| exodeoxyribonuclease III [Dialister micraerophilus DSM 19965]
gi|327471372|gb|EGF16823.1| exodeoxyribonuclease III [Dialister micraerophilus DSM 19965]
Length = 254
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 91/278 (32%), Positives = 144/278 (51%), Gaps = 34/278 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPE-FSNF-ITTFDPDVIALQILMRALSSPPFKNYQIWWSLA 99
LK+++WN N L +K + + F N F LQ L P + YQ W S
Sbjct: 4 LKYISWNVNGLRACIKKGFLDSFKNLNADCFCLQETKLQPHQIELDIPGY--YQYWNSAI 61
Query: 100 DSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEE 159
Y+GTAL K +P VS+ + +++ +GR+I AEF+ +L+ Y PN+ + +
Sbjct: 62 KKGYSGTALFTK--IKPISVSYGM--NIEEHDQEGRLITAEFKNHFLVVCYTPNS--QRQ 115
Query: 160 ENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPN 218
+ R KW+ + ++L+ + KP+I CGDLNV+H+EID+++P
Sbjct: 116 LARLEYRMKWENDFKNYLLKLTESKPVILCGDLNVAHKEIDLANPS-------------- 161
Query: 219 KEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRI 278
+ GFT ERK+F +L+ G D +R+L+ +K D WS + R RI
Sbjct: 162 -SNHKNAGFTDDERKKFSTLLENG-FTDTFRYLYPDKK-DAYSWWSYFAKSRERNIGWRI 218
Query: 279 DYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
DYF+VS++LK++I ++ E++ GSDHCPV L
Sbjct: 219 DYFLVSDKLKNKIKDAKIHP---EIQ---GSDHCPVEL 250
>gi|331002672|ref|ZP_08326187.1| exodeoxyribonuclease [Lachnospiraceae oral taxon 107 str. F0167]
gi|330407085|gb|EGG86589.1| exodeoxyribonuclease [Lachnospiraceae oral taxon 107 str. F0167]
Length = 262
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 90/282 (31%), Positives = 140/282 (49%), Gaps = 40/282 (14%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLAD 100
K ++WN N L V F +F D D+ +Q L Y +W+ A
Sbjct: 13 KMISWNVNGLRAAVTKG---FLDFFRDIDADIFCIQESKLSEGQIELDLPGYYDYWNYAA 69
Query: 101 SK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEE 159
K Y+G A+ K +P V++ + +++ +GRVI AE++ FYL+ Y PN+ +
Sbjct: 70 KKGYSGVAVFTKD--KPIGVTYGI--GIEEHDNEGRVITAEYDDFYLITCYTPNS--QRG 123
Query: 160 ENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPN 218
R W+ ++VL+ KP+I+CGDLNV+H+EID+ +P
Sbjct: 124 LTRLDYRMAWEDAFLDYVLKLEEKKPVIFCGDLNVAHKEIDLKNP--------------- 168
Query: 219 KEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM-- 276
K + GFT ER + +L G D++R L+ +K + +SW + +G R K +
Sbjct: 169 KTNRKNAGFTDEERGKMDIVLSSG-FADSFRVLYPDK--EGAYSW-WSYMGGARAKNVGW 224
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYFIVS++LKDRI ++ GSDHCPV L++
Sbjct: 225 RIDYFIVSDKLKDRIKEAKIHSD------ILGSDHCPVELDI 260
>gi|420452902|ref|ZP_14951743.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-6]
gi|393066715|gb|EJB67534.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-6]
Length = 250
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 140/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ ++ +++ +GRVI EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGIDIE--EHDKEGRVITCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER++F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEEREKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKDIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|253574957|ref|ZP_04852296.1| exodeoxyribonuclease III [Paenibacillus sp. oral taxon 786 str.
D14]
gi|251845413|gb|EES73422.1| exodeoxyribonuclease III [Paenibacillus sp. oral taxon 786 str.
D14]
Length = 251
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 89/282 (31%), Positives = 138/282 (48%), Gaps = 38/282 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ---ILMRALSSPPFKNYQIWWSL 98
+K V+WN N L V F ++ D D+ LQ + + Y+ +W+
Sbjct: 1 MKLVSWNVNGLRACVGKG---FLDYFKEADADIFCLQETKLQEGQIELDLGSEYEQYWNY 57
Query: 99 ADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWK 157
A+ K Y+GTA+ + +P V + +E+ YEP+GR+I EFE FYL+ Y PN K
Sbjct: 58 AEKKGYSGTAVFTR--IKPLSVRYGMEE---DYEPEGRIITLEFEQFYLVTVYTPNA--K 110
Query: 158 EEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVP 216
+ + R +W+ R + ++ KP+I CGDLNV+H ID+ +
Sbjct: 111 RDLSRLDYRMEWEDRFRTYLTGLDAVKPVIVCGDLNVAHNPIDIKNA------------- 157
Query: 217 PNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM 276
K + G G+T+ ER + +L G ID +R + +++ + WS P + R
Sbjct: 158 --KSNEGNSGYTLEERGKMTELLASG-FIDTFRHFYPDREGVYSW-WSYMPKIRERNIGW 213
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF+ S L A ++Q GI+ GSDHCPVSL +
Sbjct: 214 RIDYFLASSRL-----APKLQDAGIDCH-ILGSDHCPVSLTV 249
>gi|449664158|ref|XP_002161039.2| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like [Hydra
magnipapillata]
Length = 352
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 95/302 (31%), Positives = 150/302 (49%), Gaps = 50/302 (16%)
Query: 36 NSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ-----------ILMRAL 84
+ + LK +WN L V N N++ DPDV+ LQ +++
Sbjct: 82 DGRTSTLKICSWNVAGLRAWVNKN---GLNYVIEEDPDVLCLQETKCTENDLPGQVLQMK 138
Query: 85 SSPPFKN-----YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVIL 138
+ P N Y ++W A K +G +L K +P KV++ L +++ +GR+I
Sbjct: 139 NGPKVTNVSNSGYYMYWCNAKKKGCSGVSLWCK--LKPLKVTYGL--GIKEHDSEGRLIT 194
Query: 139 AEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEE 197
AEFE +Y++ TY PN+G K + RR W+ + +V + KP+I CGD NV+H E
Sbjct: 195 AEFEKYYIITTYVPNSGQKLIRLDY--RRIWNTDYKNYVGELKKKKPVIMCGDFNVAHTE 252
Query: 198 IDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDM 257
ID+++P NK + GFT ER F A+L++G ID +R L+ EK
Sbjct: 253 IDIANPN------------SNKRN---AGFTEEERSDFTALLEDG-YIDTFRKLNPEKTG 296
Query: 258 DCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLE 317
F W+ + + K R+DYFIV+++++D I C+ + GSDHCP+ L
Sbjct: 297 AYTF-WTYMMNARSKNKGWRLDYFIVTKDIEDDI--CD----SVIRSSVMGSDHCPIVLN 349
Query: 318 LS 319
L+
Sbjct: 350 LA 351
>gi|423669305|ref|ZP_17644334.1| exodeoxyribonuclease [Bacillus cereus VDM034]
gi|423674566|ref|ZP_17649505.1| exodeoxyribonuclease [Bacillus cereus VDM062]
gi|401298432|gb|EJS04032.1| exodeoxyribonuclease [Bacillus cereus VDM034]
gi|401310117|gb|EJS15450.1| exodeoxyribonuclease [Bacillus cereus VDM062]
Length = 252
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 84/283 (29%), Positives = 143/283 (50%), Gaps = 37/283 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPF--KNYQIWWSLA 99
+K ++WN N L + F ++ + D+ LQ + + Y +W+ A
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEKSNADIFCLQEIKLQSGQIDLNPEGYYTYWNYA 58
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ KK +P V++ L +++ +GRVI EF+ FY++ Y PN+ K
Sbjct: 59 VKKGYSGTAIFTKK--EPISVTYGL--GIEEHDQEGRVITLEFDDFYMITLYTPNS--KR 112
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R +W+ + ++ + KP+I+CGDLNV+H+E+D+ +P
Sbjct: 113 GLERLDYRMEWEDDFRAYIKRLDEKKPVIFCGDLNVAHKEVDLKNP-------------- 158
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
K + PGF+ ER++F +L+ G ID YR+L+ D + +S WS + +
Sbjct: 159 -KSNRKNPGFSDEEREKFTCVLEAG-FIDTYRYLY--PDQEGAYSWWSYRMDARAKNIGW 214
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
R+DYF++SE LK +I ++ + GSDHCPV L ++
Sbjct: 215 RLDYFVISERLKHKITDAKINSEVM------GSDHCPVELHIN 251
>gi|420504982|ref|ZP_15003506.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-62]
gi|393154128|gb|EJC54413.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-62]
Length = 250
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 140/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ ++ +++ +GRV+ EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGIDME--EHDKEGRVVTCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLNYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER++F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEEREKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKDIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|420491838|ref|ZP_14990414.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-15]
gi|420525605|ref|ZP_15024008.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-15b]
gi|393108533|gb|EJC09067.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-15]
gi|393133626|gb|EJC34042.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-15b]
Length = 250
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 140/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ ++ +++ +GRVI EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGIDIK--EHDKEGRVITCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER++F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEEREKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKDIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|420415952|ref|ZP_14915065.1| exodeoxyribonuclease III [Helicobacter pylori NQ4053]
gi|393031857|gb|EJB32928.1| exodeoxyribonuclease III [Helicobacter pylori NQ4053]
Length = 250
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 140/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ ++ +++ +GRV+ EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGIDME--EHDKEGRVVTCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER++F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEEREKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKDIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|420476560|ref|ZP_14975223.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-23]
gi|393094985|gb|EJB95590.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-23]
Length = 250
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 140/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ ++ +++ +GRVI EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGIDIK--EHDKEGRVITCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER++F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEEREKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKDIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|350268411|ref|YP_004879717.1| exodeoxyribonuclease [Oscillibacter valericigenes Sjm18-20]
gi|348593251|dbj|BAK97211.1| exodeoxyribonuclease [Oscillibacter valericigenes Sjm18-20]
Length = 250
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 89/282 (31%), Positives = 138/282 (48%), Gaps = 39/282 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPFK--NYQIWWSLA 99
+K ++WN N L + F +F + D DVI LQ F Y+ +W+ A
Sbjct: 1 MKLISWNVNGLRACIGKG---FLDFCKSADADVICLQETKMKPEQADFDLPGYEKFWNSA 57
Query: 100 DS-KYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
D Y+GTA+ + P +++ ++E GRVI AEFE FYL+ Y PN ++
Sbjct: 58 DKPGYSGTAVFTR--VPPLNMTYDFGGDEYRHE--GRVITAEFEEFYLVCCYTPNA--QD 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R +W+ ++++ + KP++ CGDLNV+HEEID+ +P
Sbjct: 112 ELRRIDYRMRWEDDFRDYLRELDRVKPVVLCGDLNVAHEEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
K + G GF+ ER + +L G D +R L+ EK +S WS + +
Sbjct: 158 -KTNRGHAGFSDQERGKMTELLSTG-FSDTFRTLYPEK---IAYSWWSYRFRAREKNAGW 212
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYFIVS +++++ + + +GSDHCPV LEL
Sbjct: 213 RIDYFIVSRRFQEKVV------DSLICDQVFGSDHCPVGLEL 248
>gi|150399093|ref|YP_001322860.1| exodeoxyribonuclease III Xth [Methanococcus vannielii SB]
gi|150011796|gb|ABR54248.1| exodeoxyribonuclease III Xth [Methanococcus vannielii SB]
Length = 257
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 87/279 (31%), Positives = 143/279 (51%), Gaps = 37/279 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N + +KN F +F+ + +P++I +Q + + Y +W+ A
Sbjct: 9 MKMISWNVNGIRACLKNG---FMDFLNSKNPEIICIQETKVQKGQVQLGLNGYFEYWNYA 65
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K +PK V + + T K + +GRVI EFE ++L+N Y PN+ +
Sbjct: 66 EKKGYSGTAIFTK--IEPKSVKYGI--TNYKSDKEGRVITLEFEEYFLVNVYTPNS--QR 119
Query: 159 EENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R+KWDK + KP+I+CGDLNV+H+EID+ +P
Sbjct: 120 GLKRLECRQKWDKDFLNHLKTLEQKKPVIFCGDLNVAHKEIDLKNP-------------- 165
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K++ GFT ER F ++ G +D +R L+ E + +S+ N K G R
Sbjct: 166 -KQNIKNAGFTKEERNGFDNLINSG-FLDTFRELNNEPENYTWWSYRFNAREKNIG--WR 221
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
IDYF +S++L++R+ + GSDHCPV +
Sbjct: 222 IDYFCISKKLRERL------KDAFIMSEVLGSDHCPVGI 254
>gi|420439551|ref|ZP_14938514.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-29]
gi|393053870|gb|EJB54812.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-29]
Length = 250
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 140/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ ++ +++ +GRVI EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGIDIK--EHDKEGRVITCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER++F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEEREKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKDIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|420447816|ref|ZP_14946702.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-43]
gi|420476276|ref|ZP_14974943.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-21]
gi|393061877|gb|EJB62737.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-43]
gi|393090183|gb|EJB90817.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-21]
Length = 250
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 139/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ + +++ +GRVI EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGINME--EHDKEGRVITCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER++F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEEREKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKDIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|6980832|pdb|1DEW|A Chain A, Crystal Structure Of Human Ape1 Bound To Abasic Dna
gi|6980833|pdb|1DEW|B Chain B, Crystal Structure Of Human Ape1 Bound To Abasic Dna
Length = 279
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 94/312 (30%), Positives = 158/312 (50%), Gaps = 45/312 (14%)
Query: 17 PALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIA 76
PAL D +T+ + K LK +WN + L +K + +++ PD++
Sbjct: 3 PALYEDPPDHKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVKEEAPDILC 54
Query: 77 LQ-------ILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 128
LQ L L P ++Q W + +D + Y+G LL ++C P KVS+ +
Sbjct: 55 LQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGIGDE-- 110
Query: 129 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIW 187
+++ +GRVI+AEF++F L+ Y PN G + R++WD+ ++F+ S KPL+
Sbjct: 111 EHDQEGRVIVAEFDSFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVL 168
Query: 188 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 247
CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L+ L D+
Sbjct: 169 CGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELLQAVPLADS 213
Query: 248 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 307
+R L+ F W+ + + R+DYF++S L + +++ +
Sbjct: 214 FRHLYPNTPYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL------ 266
Query: 308 GSDHCPVSLELS 319
GSDHCP++L L+
Sbjct: 267 GSDHCPITLYLA 278
>gi|404483949|ref|ZP_11019164.1| exodeoxyribonuclease III (xth) [Clostridiales bacterium OBRC5-5]
gi|404342961|gb|EJZ69330.1| exodeoxyribonuclease III (xth) [Clostridiales bacterium OBRC5-5]
Length = 276
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 91/282 (32%), Positives = 138/282 (48%), Gaps = 40/282 (14%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLAD 100
K ++WN N L V F +F D D+ +Q L Y +W+ A
Sbjct: 27 KMISWNVNGLRAAVTKG---FLDFFRDIDADIFCIQESKLSEGQIELDLPGYYDYWNYAQ 83
Query: 101 SK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEE 159
K Y+G A+ K +P V++ + +++ +GRVI AE+E FYL+ Y PN+ +
Sbjct: 84 KKGYSGVAVFTKD--KPLNVTYGI--GIEEHDNEGRVITAEYEDFYLITCYTPNS--QRG 137
Query: 160 ENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPN 218
R W+ ++L+ KP+I+CGDLNV+H+EID+ +P
Sbjct: 138 LTRLDYRMTWEDAFLSYILKLEEKKPVIFCGDLNVAHKEIDLKNP--------------- 182
Query: 219 KEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM-- 276
K + GFT ER + IL G D++R L+ +K +SW + +G R K +
Sbjct: 183 KTNRKNAGFTDEERGKMDVILTSG-FCDSFRVLYPDK--TDAYSW-WSYMGGARAKNVGW 238
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYFIVS++LKDRI ++ GSDHCPV L++
Sbjct: 239 RIDYFIVSDKLKDRIKEAKIHSD------ILGSDHCPVELDI 274
>gi|335356439|ref|ZP_08548309.1| exodeoxyribonuclease [Lactobacillus animalis KCTC 3501]
Length = 253
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 93/283 (32%), Positives = 141/283 (49%), Gaps = 36/283 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+KF++WN N L +K N+ E T D D LQ L +Y +W+ A
Sbjct: 1 MKFISWNVNGLRAVLKKNFLEV---FTDLDADFFCLQETKLQAGQVDLDLPDYYQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ KK +P V+ L +++ +GRV+ E+E FYL+N Y PN+ K
Sbjct: 58 QKKGYSGTAIFTKK--KPLAVTKGLGLA--EFDQEGRVLTLEYEDFYLVNCYTPNSQDKL 113
Query: 159 EENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ F R +W+ + + + KP+I CGDLNV+H EID+ +P+ P
Sbjct: 114 KRLDF--RLQWEAAFSDHLTNLATKKPVILCGDLNVAHNEIDLKNPK------------P 159
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
N+++ GF+I ER+ A+L G D +R ++ +K + WS + R R
Sbjct: 160 NQKN---AGFSIQERQAMTALLARG-FTDTFRHIYLDKTGAYSW-WSYRFNARARNAGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 320
IDYFI S L ++ ++ L GSDHCPV LE +E
Sbjct: 215 IDYFICSNALLPQVKDSQI------LPEILGSDHCPVMLETNE 251
>gi|347525140|ref|YP_004831888.1| exodeoxyribonuclease III [Lactobacillus ruminis ATCC 27782]
gi|345284099|gb|AEN77952.1| Exodeoxyribonuclease III [Lactobacillus ruminis ATCC 27782]
Length = 254
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 94/282 (33%), Positives = 134/282 (47%), Gaps = 34/282 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+ FV+WN N L +K N FS D D +Q L Y +W+ A
Sbjct: 1 MNFVSWNVNGLRAVLKKN---FSEVFEKLDADFFCIQETKLQEGQVELDLPGYHQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K +P+ VS+ ++ + +E GRVI E+ +FYL+ Y+PN+ K
Sbjct: 58 ERKGYSGTAIFTKH--EPQSVSYGIQNSEFDHE--GRVITLEYASFYLVCCYSPNSQPKL 113
Query: 159 EENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPN 218
+ F R D + KP+I CGDLNV+HEEID+ +P
Sbjct: 114 KRLDF-RMGFEDAFLNYLNALKEKKPVIMCGDLNVAHEEIDLKNP--------------- 157
Query: 219 KEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRI 278
K + GF+ ER +L+ G L D +RF H ++ + WS + RI
Sbjct: 158 KTNHKNAGFSNEERSCMTRLLENGYL-DTFRFFHPDETGIYSW-WSYRFNARKNNAGWRI 215
Query: 279 DYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 320
DYFIVSE LKD + E+ L GSDHCPV LE ++
Sbjct: 216 DYFIVSESLKDSLENAEI------LTDIMGSDHCPVLLETAD 251
>gi|294781992|ref|ZP_06747324.1| exodeoxyribonuclease III [Fusobacterium sp. 1_1_41FAA]
gi|340754328|ref|ZP_08691085.1| exodeoxyribonuclease [Fusobacterium sp. 2_1_31]
gi|229423850|gb|EEO38897.1| exodeoxyribonuclease [Fusobacterium sp. 2_1_31]
gi|294481803|gb|EFG29572.1| exodeoxyribonuclease III [Fusobacterium sp. 1_1_41FAA]
Length = 253
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 87/282 (30%), Positives = 140/282 (49%), Gaps = 38/282 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N + +K F ++ + D+ LQ L K Y +W+ A
Sbjct: 1 MKLISWNVNGIRAAIKKG---FLDYFNEQNADIFCLQETKLSAGQLDLELKGYHQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K+ +P VS+ L +++ +GRVI EFE FY++ Y PN+ K+
Sbjct: 58 EKKGYSGTAIFTKE--EPLSVSYGL--GIEEHDKEGRVITLEFEKFYMITVYTPNS--KD 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R W+ ++++ K P++ CGDLNV+H+EID+ +P
Sbjct: 112 ELLRLDYRMVWEDEFRKYLKNLEKKKPVVVCGDLNVAHKEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
K + GFT ER +F +L+ G ID +R+ + D++ +S WS +
Sbjct: 158 -KTNRRNAGFTDEERGKFTELLESG-FIDTFRYFY--PDLEHAYSWWSYRANARKNNTGW 213
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF+VS+ L+ ++ E+ GSDHCPV L L
Sbjct: 214 RIDYFVVSKALEKYLVDAEIHAQT------EGSDHCPVVLFL 249
>gi|327313318|ref|YP_004328755.1| exodeoxyribonuclease III [Prevotella denticola F0289]
gi|326944960|gb|AEA20845.1| exodeoxyribonuclease III [Prevotella denticola F0289]
Length = 249
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 88/282 (31%), Positives = 138/282 (48%), Gaps = 39/282 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+KF++WN N L V EF D D LQ + F Y+ +W+ A
Sbjct: 1 MKFISWNVNGLRACVGK---EFEQQFKDLDADFFCLQETKMQAGQLDLSFPGYESYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
D K Y+GTA+ K +P V++ + +++ +GRVI E + FYL+ Y PN+ ++
Sbjct: 58 DKKGYSGTAIFTKH--KPLNVTYGI--GIDEHDHEGRVITLEMDDFYLVTVYTPNS--QD 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R KW+ Q ++ + KP++ CGD+NV+H+EID+ +P
Sbjct: 112 GLRRLDYRMKWEDDFQAYLHKLDEKKPVVVCGDMNVAHQEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
K + GFT ER++ +L G ID +R L+ E+ +S WS + R
Sbjct: 158 -KTNRKNAGFTDEEREKMTQLLGNG-FIDTFRTLYPEQ---VTYSWWSYRFRARERNTGW 212
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF++SE L+DR+ ++ GSDHCPV ++L
Sbjct: 213 RIDYFLISERLRDRLEDAKIHTE------IMGSDHCPVEVDL 248
>gi|426232864|ref|XP_004010439.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Ovis aries]
Length = 318
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 95/323 (29%), Positives = 163/323 (50%), Gaps = 51/323 (15%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
EKE + L D +T+ + K LK +WN + L +K + ++I
Sbjct: 34 EKEAVGEGAVLYEDPPDQKTSPSG-----KSATLKICSWNVDGLRAWIKK---KGLDWIK 85
Query: 69 TFDPDVIALQ----------ILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPK 117
PD++ LQ + ++ LS P +Q W + +D + Y+G LL ++C P
Sbjct: 86 EEAPDILCLQETKCSENKLPVELQELSGLP---HQYWSAPSDKEGYSGVGLLSRQC--PL 140
Query: 118 KVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV 177
KVS+ + + +++ +GRVI+AE++ F L+ Y PN G + R+ WD+ ++F+
Sbjct: 141 KVSYGIGEE--EHDQEGRVIVAEYDAFVLVTAYVPNAG--RGLVRLEYRQCWDEAFRKFL 196
Query: 178 LQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFG 236
S KPL+ CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG
Sbjct: 197 KGLASRKPLVLCGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFG 241
Query: 237 AILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEM 296
+L+ L D++R L+ + F W+ + + R+DYF++S+ L + ++
Sbjct: 242 ELLQAAPLTDSFRHLYPNRAYAYTF-WTYMMNARSKNVGWRLDYFLLSQSLLPALCDSKI 300
Query: 297 QGHGIELEGFYGSDHCPVSLELS 319
+ + GSDHCP++L L+
Sbjct: 301 RSKAL------GSDHCPITLYLA 317
>gi|225548156|ref|ZP_03769441.1| hypothetical protein RUMHYD_00135 [Blautia hydrogenotrophica DSM
10507]
gi|225040687|gb|EEG50933.1| exodeoxyribonuclease III [Blautia hydrogenotrophica DSM 10507]
Length = 251
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 81/284 (28%), Positives = 141/284 (49%), Gaps = 40/284 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQIL-----MRALSSPPFKNYQIWW 96
+KF++WN N + +K F + + D+ +Q L+ P + Y W
Sbjct: 1 MKFISWNVNGIRACLKKG---FEEYFQEANADIFCIQETKCQEGQVELTLPGYHQY--WN 55
Query: 97 SLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 156
S Y+GTA+ K+ +P VS+ + +++ +GRVI E+E FY + Y PN+
Sbjct: 56 SAVRKGYSGTAIFAKR--EPLSVSYGI--GIEEHDQEGRVITLEYEDFYFVTVYTPNS-- 109
Query: 157 KEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 215
+ E R W++ E++ + KP++WCGDLNV+H+EID+ +P
Sbjct: 110 QNELARLSYRMDWERDFLEYLTKLEERKPVVWCGDLNVAHQEIDLKNP------------ 157
Query: 216 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 275
K + GFT ER F +L+ G ID +R+ + +++ + WS + +
Sbjct: 158 ---KTNRKNAGFTDEERACFTKVLESG-FIDTFRYFYPDQEGIYSW-WSYRFRAREKNAG 212
Query: 276 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
RIDYF+VS L+++++ ++ + GSDHCPV L+++
Sbjct: 213 WRIDYFLVSSSLREKMVDAKIHTQVL------GSDHCPVELDIT 250
>gi|420154891|ref|ZP_14661764.1| exodeoxyribonuclease III [Clostridium sp. MSTE9]
gi|394760027|gb|EJF42663.1| exodeoxyribonuclease III [Clostridium sp. MSTE9]
Length = 252
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 92/287 (32%), Positives = 140/287 (48%), Gaps = 46/287 (16%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+KFV+WN N L + F +F D D+ LQ + + Y +W+ A
Sbjct: 1 MKFVSWNVNGLRACLNKG---FLDFFREADADIFCLQETKMQEGQAELDLPGYLQYWNSA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ KK +P V + + + +GR I EFE+FYL+N Y PN+ +
Sbjct: 58 EKKGYSGTAVFTKK--EPLSVCYDIRHP--DHTGEGRAITLEFESFYLVNVYTPNS--QR 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R +W+ +E+V Q KP+I CGDLNV+H+EID+ +
Sbjct: 112 ELVRLPYRMEWENAFREYVTQLDEKKPVIICGDLNVAHQEIDLKNA-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
K + G GF+ ER + +L G +D++R L+ D+ ++ WS +
Sbjct: 158 -KSNIGNAGFSYEERGKLTELLASG-FLDSFRELY--PDLTGAYTWWSYMFKARQNNAGW 213
Query: 277 RIDYFIVSEELK----DRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
RIDYF++SE L+ D +I E+Q GSDHCPV L L+
Sbjct: 214 RIDYFLISERLREKLSDSLIYSEVQ----------GSDHCPVGLILT 250
>gi|365130338|ref|ZP_09341407.1| exodeoxyribonuclease III (xth) [Subdoligranulum sp. 4_3_54A2FAA]
gi|363620249|gb|EHL71547.1| exodeoxyribonuclease III (xth) [Subdoligranulum sp. 4_3_54A2FAA]
Length = 251
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 87/282 (30%), Positives = 137/282 (48%), Gaps = 38/282 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILM----RALSSPPFKNYQIWWS 97
+K ++WN N + F++ F DV+ LQ +A SPP +Q W+S
Sbjct: 1 MKLISWNVNGFRAILGKG---FADIFEGFGADVVCLQETKMQPGQAEFSPP-GYHQYWYS 56
Query: 98 LADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWK 157
Y+GTA+ + +P V + + K +E GR I EFE F+L+N Y PN+ +
Sbjct: 57 AEKKGYSGTAVFTR--MEPLSVRYGIGKEEHSHE--GRAITLEFEQFFLVNVYTPNS--Q 110
Query: 158 EEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVP 216
E R +W+ ++ ++ + KP+++CGDLNV+H EID+ +P
Sbjct: 111 NELARLPYRMQWEDDLRAYLCALDTEKPVVYCGDLNVAHREIDLKNP------------- 157
Query: 217 PNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM 276
K++ GF+ ER++ +L G +D +R L+ + + WS +
Sbjct: 158 --KQNIHSAGFSYEERQKMTDLLMSG-FVDTFRALYPDAAGRYTW-WSYFRRARETNAGW 213
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYFIVSE L+++I G + YGSDHCPV L L
Sbjct: 214 RIDYFIVSERLREKI------GDALIYSDVYGSDHCPVGLVL 249
>gi|385216679|ref|YP_005776636.1| exodeoxyribonuclease [Helicobacter pylori F32]
gi|317181208|dbj|BAJ58994.1| exodeoxyribonuclease [Helicobacter pylori F32]
Length = 250
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 139/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGINME--EHDKEGRVVTCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER++F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEEREKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKNIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|420500328|ref|ZP_14998874.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-30]
gi|393152095|gb|EJC52396.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-30]
Length = 250
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 139/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ + +++ +GRVI EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGI--NIEEHDKEGRVITCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER++F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEEREKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKNIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|311070625|ref|YP_003975548.1| exodeoxyribonuclease III [Bacillus atrophaeus 1942]
gi|419820989|ref|ZP_14344593.1| exodeoxyribonuclease III [Bacillus atrophaeus C89]
gi|310871142|gb|ADP34617.1| exodeoxyribonuclease III [Bacillus atrophaeus 1942]
gi|388474900|gb|EIM11619.1| exodeoxyribonuclease III [Bacillus atrophaeus C89]
Length = 252
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 92/286 (32%), Positives = 144/286 (50%), Gaps = 45/286 (15%)
Query: 42 LKFVTWNANSL-LLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPFK----NYQIWW 96
+K ++WN N L L K N F++++ + D+ LQ + L K Y ++W
Sbjct: 1 MKLMSWNVNGLRALLTKMN---FNSYLEEENVDIFCLQEI--KLQDGQIKLEPEGYHVYW 55
Query: 97 SLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNG 155
+ A+ K Y+GTA+ KK +P V++ L +++ +GR+I EFE Y++ Y PN
Sbjct: 56 NYAEKKGYSGTAIFTKK--EPLAVTYGL--GIKEHDQEGRLITLEFENMYVITVYTPNA- 110
Query: 156 WKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY 214
K R W+ ++ KP++ CGDLNV+H+EID+ +P
Sbjct: 111 -KRGLERIDYRMDWEDAFLSYIKALDVKKPVVLCGDLNVAHQEIDLKNP----------- 158
Query: 215 VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGK 274
K + GF+ ER+RF +L+EG ID +R+LH D + +SW + R K
Sbjct: 159 ----KANRKNAGFSDQERERFSQMLEEG-FIDTFRYLH--PDQEGAYSWWSYRMNA-RAK 210
Query: 275 RM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
+ R+DYFIVSE LK +I ++ + GSDHCPV L +
Sbjct: 211 NVGWRLDYFIVSERLKKQIRGAKICNEVM------GSDHCPVELTI 250
>gi|420488041|ref|ZP_14986644.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-8]
gi|420521916|ref|ZP_15020345.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-8b]
gi|393101431|gb|EJC02003.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-8]
gi|393126486|gb|EJC26937.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-8b]
Length = 250
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 139/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ ++ +++ +GRVI EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLNVSYGIDME--EHDKEGRVITCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER +F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEERGKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKDIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|386756397|ref|YP_006229614.1| exodeoxyribonuclease III [Helicobacter pylori PeCan18]
gi|384562655|gb|AFI03121.1| exodeoxyribonuclease III [Helicobacter pylori PeCan18]
Length = 250
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 139/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ + +++ +GRVI EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGI--NIEEHDKEGRVITCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEMEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER++F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEEREKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKDIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|420424301|ref|ZP_14923369.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-4]
gi|393039589|gb|EJB40616.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-4]
Length = 250
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 139/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ ++ +++ +GRVI EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGIDME--EHDKEGRVITCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER +F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEERGKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKDIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|168205412|ref|ZP_02631417.1| exodeoxyribonuclease III [Clostridium perfringens E str. JGS1987]
gi|170663003|gb|EDT15686.1| exodeoxyribonuclease III [Clostridium perfringens E str. JGS1987]
Length = 250
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 88/280 (31%), Positives = 139/280 (49%), Gaps = 38/280 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L VK F ++ + D D+ LQ L + Y +W+ A
Sbjct: 1 MKLISWNVNGLRACVKKG---FLDYFKSEDADIFCLQETKLQEGQIDLDLEGYHQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ KK +P V + + ++ +GRVI EFE F+++ Y PN+ +
Sbjct: 58 EKKGYSGTAIFTKK--EPLNVYYGINME--HHDKEGRVITLEFEDFFMVTVYTPNS--QS 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSGKP-LIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E + R +W+ + ++L+ S K ++ CGDLNV+H+EID+ +P
Sbjct: 112 ELARLEYRMEWEDDFRNYLLELSSKKGVVVCGDLNVAHKEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
K + GFT ER +F +L G ID +R+ + D++ +S WS +
Sbjct: 158 -KTNRKNAGFTDEERDKFSTLLSSG-FIDTFRYFN--PDLEGIYSWWSYRFNARKNNAGW 213
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
RIDYF+VS L+DRI + + GSDHCPV L
Sbjct: 214 RIDYFLVSNNLEDRIKEAFIDTEIL------GSDHCPVKL 247
>gi|340349685|ref|ZP_08672691.1| exodeoxyribonuclease III [Prevotella nigrescens ATCC 33563]
gi|387133768|ref|YP_006299740.1| exodeoxyribonuclease III [Prevotella intermedia 17]
gi|445112647|ref|ZP_21377202.1| exodeoxyribonuclease III (xth) [Prevotella nigrescens F0103]
gi|339610439|gb|EGQ15291.1| exodeoxyribonuclease III [Prevotella nigrescens ATCC 33563]
gi|386376616|gb|AFJ08042.1| exodeoxyribonuclease III [Prevotella intermedia 17]
gi|444841476|gb|ELX68491.1| exodeoxyribonuclease III (xth) [Prevotella nigrescens F0103]
Length = 250
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 90/283 (31%), Positives = 137/283 (48%), Gaps = 39/283 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+KF++WN N L V F D D LQ + F Y+ +W+ A
Sbjct: 1 MKFISWNVNGLRACVTKG---FKESFAEIDADFFCLQETKMQAGQLDIAFDGYESYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
D K Y+GTA+ K +P VS+ L +++ +GRVI E E FYL+ Y PN ++
Sbjct: 58 DKKGYSGTAIFTKH--KPLSVSYGLGID--EHDHEGRVITLEMEKFYLVTCYTPNA--QD 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R +W+ Q +V + KP+I CGDLNV+HEEID+ +P
Sbjct: 112 GLKRLDYRMQWEDDFQAYVKRLDEKKPVIVCGDLNVAHEEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
K + GF+ ER + L G ID++R L+ E+ +S WS + +
Sbjct: 158 -KTNRKNAGFSDEERAKMTQFLGNG-FIDSFRTLYPEQ---VTYSWWSYRFKAREKNAGW 212
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
RIDYF++S L+++++ ++ YGSDHCPV +EL+
Sbjct: 213 RIDYFLLSNRLREQLVDAKIHTE------VYGSDHCPVEVELN 249
>gi|967268|gb|AAC47024.1| class II apurinic/apyrimidinic(AP)-endonuclease [Dictyostelium
discoideum]
Length = 361
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 89/291 (30%), Positives = 143/291 (49%), Gaps = 39/291 (13%)
Query: 34 EENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQIL------MRALSSP 87
E +++ +K ++WN + F+ + +PDV+ LQ ++ P
Sbjct: 97 EPKVEENQMKIISWNVAGFKSVLSKG---FTECVEKENPDVLCLQETKINPSNIKKDQMP 153
Query: 88 PFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYL 146
K Y+ + AD K + GT +L KK +P ++F + K++ +GRVI E+ FY+
Sbjct: 154 --KGYEYHFIEADQKGHHGTGVLTKK--KPNAITFGI--GIAKHDNEGRVITLEYVQFYI 207
Query: 147 LNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEF 205
+NTY PN G + + R ++WD Q ++ + + KP+IWCGDLNV+H EID+ +P
Sbjct: 208 VNTYIPNAGTRGLQRLDYRIKEWDVDFQAYLEKLNATKPIIWCGDLNVAHTEIDLKNP-- 265
Query: 206 FAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSG 265
K + GFTI ER F L++G +D+YR + K+ F WS
Sbjct: 266 -------------KTNKKSAGFTIEERTSFSNFLEKG-YVDSYRHFNPGKEGSYTF-WSY 310
Query: 266 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
G+ + R+DYF+VS+ L D I + GSDHCP+ +
Sbjct: 311 LGGGRSKNVGWRLDYFVVSKRLMDSIKISPFHRTSV-----MGSDHCPIGV 356
>gi|420467774|ref|ZP_14966523.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-9]
gi|393083034|gb|EJB83748.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-9]
Length = 250
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 138/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ + +++ +GRVI EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGINME--EHDKEGRVITCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER +F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEERGKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKNIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|217034282|ref|ZP_03439699.1| hypothetical protein HP9810_885g13 [Helicobacter pylori 98-10]
gi|216943254|gb|EEC22719.1| hypothetical protein HP9810_885g13 [Helicobacter pylori 98-10]
Length = 250
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 139/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGINME--EHDKEGRVVTCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER++F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEEREKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKNIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|420425904|ref|ZP_14924964.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-5]
gi|393040802|gb|EJB41820.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-5]
Length = 250
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 140/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ ++ +++ +GR+I EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGIDIK--EHDKEGRIITCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER++F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEEREKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKDIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|345884610|ref|ZP_08836014.1| exodeoxyribonuclease [Prevotella sp. C561]
gi|345042603|gb|EGW46699.1| exodeoxyribonuclease [Prevotella sp. C561]
Length = 249
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 87/282 (30%), Positives = 139/282 (49%), Gaps = 39/282 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+KF++WN N L V +F + D LQ + F Y+ +W+ A
Sbjct: 1 MKFISWNVNGLRACVG---KDFEQQFKDLNADFFCLQETKMQAGQLDLSFPGYESYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
D K Y+GTA+ K +P V++ ++ +++ +GRVI E + FYL+ Y PN+ ++
Sbjct: 58 DKKGYSGTAIYTKH--KPLNVTYGIDID--EHDHEGRVITLEMDDFYLITVYTPNS--QD 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R KW++ Q ++ + KP+I CGD+NV+H+EID+ +P
Sbjct: 112 GLRRLDYRMKWEEDFQAYLHRLDAIKPVIVCGDMNVAHQEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
K + GFT ER++ +L G ID +R L+ EK +S WS + +
Sbjct: 158 -KTNHKNAGFTDEEREKMTQLLSNG-FIDTFRTLYPEK---VTYSWWSYRFRAREKNTGW 212
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF++SE LKDR+ ++ GSDHCP+ + L
Sbjct: 213 RIDYFLISERLKDRLEDAKIHTE------IMGSDHCPIEITL 248
>gi|168214660|ref|ZP_02640285.1| exodeoxyribonuclease III [Clostridium perfringens CPE str. F4969]
gi|422874042|ref|ZP_16920527.1| exodeoxyribonuclease III [Clostridium perfringens F262]
gi|170713849|gb|EDT26031.1| exodeoxyribonuclease III [Clostridium perfringens CPE str. F4969]
gi|380305037|gb|EIA17320.1| exodeoxyribonuclease III [Clostridium perfringens F262]
Length = 250
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 88/280 (31%), Positives = 139/280 (49%), Gaps = 38/280 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L VK F ++ + D D+ LQ L + Y +W+ A
Sbjct: 1 MKLISWNVNGLRACVKKG---FLDYFKSEDADIFCLQETKLQEGQIDLDLEGYFQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ KK +P V + + ++ +GRVI EFE F+++ Y PN+ +
Sbjct: 58 EKKGYSGTAIFTKK--EPLNVYYGINME--HHDKEGRVITLEFEDFFMVTVYTPNS--QS 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSGKP-LIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E + R +W+ + ++L+ S K ++ CGDLNV+H+EID+ +P
Sbjct: 112 ELARLEYRMEWEDDFRNYLLELSSKKGVVVCGDLNVAHKEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
K + GFT ER +F +L G ID +R+ + D++ +S WS +
Sbjct: 158 -KTNRKNAGFTDEERDKFSTLLSSG-FIDTFRYFN--PDLEGVYSWWSYRFNARKNNAGW 213
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
RIDYF+VS L+DRI + + GSDHCPV L
Sbjct: 214 RIDYFLVSNNLEDRIKEASIDTEIL------GSDHCPVKL 247
>gi|237750354|ref|ZP_04580834.1| exodeoxyribonuclease LexA [Helicobacter bilis ATCC 43879]
gi|229373884|gb|EEO24275.1| exodeoxyribonuclease LexA [Helicobacter bilis ATCC 43879]
Length = 255
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 91/285 (31%), Positives = 146/285 (51%), Gaps = 40/285 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F T D DV +Q + R+ S F Y +W+ A
Sbjct: 1 MKMISWNVNGLRACMTKG---FMDFFNTIDADVFCIQESKMHRSQSDFVFDGYYQFWNEA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GT +L K + +S + ++ +GR+I+AE+ TF+L+N Y PN+ K
Sbjct: 58 EKKGYSGTIILSK----TEPLSVCNDMGIAHHDKEGRIIVAEYATFFLVNVYTPNS--KR 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R++W+ + F+ KP+I CGDLNV+H+EID+ +P
Sbjct: 112 ELERLTYRQEWEDDFRSFLKGLEQYKPVIVCGDLNVAHKEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
K + GFT ER++ +L G ID+YR+ + +K+ ++W + +GK R
Sbjct: 158 -KTNRRNAGFTDEEREKMSVLLDSG-FIDSYRYFYPDKEH--AYTW-WSYMGKARQNNTG 212
Query: 277 -RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 320
RIDYF++S R +A ++ I E GSDHCPV + + E
Sbjct: 213 WRIDYFLLS-----RCLAKNLKEAHIYPE-IMGSDHCPVGIVIDE 251
>gi|256827574|ref|YP_003151533.1| exodeoxyribonuclease III [Cryptobacterium curtum DSM 15641]
gi|256583717|gb|ACU94851.1| exodeoxyribonuclease III [Cryptobacterium curtum DSM 15641]
Length = 262
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 93/295 (31%), Positives = 137/295 (46%), Gaps = 53/295 (17%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
++ V+WN N L K FS+ T+ DV ALQ L F +Y+ WS A
Sbjct: 1 MRLVSWNVNGLRAAEKKG---FSDIFTSLKADVFALQETKLQEGQIDLEFPDYESHWSYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ ++ +P +V L L E GR+ EF F+ ++ Y PN +
Sbjct: 58 ERKGYSGTAVYARQ--KPLQVLHGLGVPHLDTE--GRICALEFPEFWFVDVYTPNA--QN 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG---------------KPLIWCGDLNVSHEEIDVSHP 203
E R +WD ++F C G KP+I CGD NV+HEEID+ +P
Sbjct: 112 ELARIDHRMEWDDAFRDF---CKGLEKGTTPLGPDTAQPKPVIMCGDFNVAHEEIDLKNP 168
Query: 204 EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSW 263
K + G GF+ ER++F +L G +D +R L+ ++ W
Sbjct: 169 ---------------KSNRGNAGFSDEEREKFTKLLDAG-FVDTFRLLNP-TEVGAYSWW 211
Query: 264 SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
S + RIDYF+VS+ L DR+ A + +GSDHCPVSL++
Sbjct: 212 SYRFNARANNAGWRIDYFLVSKSLADRVRAARIHAD------LFGSDHCPVSLDI 260
>gi|283769444|ref|ZP_06342342.1| exodeoxyribonuclease III [Bulleidia extructa W1219]
gi|283103969|gb|EFC05354.1| exodeoxyribonuclease III [Bulleidia extructa W1219]
Length = 251
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 92/284 (32%), Positives = 146/284 (51%), Gaps = 42/284 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ-ILMRA---LSSPPFKNYQIWWS 97
+KFV+WN N L +K F F D DV ALQ M+A S F+ Y + +
Sbjct: 1 MKFVSWNVNGLRAVMKKG---FKEFFERVDADVFALQETKMQADQITSEMEFEGYYRYMN 57
Query: 98 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 156
A+ K Y+GT + K+ +P V + +E +GRVI E+ +Y + Y PN+
Sbjct: 58 SAERKGYSGTMVYCKE--EPISVQYDIEGDT---SMEGRVITLEYPNYYFVTAYVPNS-- 110
Query: 157 KEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 215
KE R +W+ R+++ + + KP+I+ GDLNV+HEEID+ +P+
Sbjct: 111 KEGLARLGFRMEWEDRLRDHLNRLKEVKPVIYTGDLNVAHEEIDLKNPQ----------- 159
Query: 216 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGK 274
+ PGF+ ER++ +L +G ID++R+L+ + + +S WS + R
Sbjct: 160 ----SNHKNPGFSDEERQKMTELLADG-YIDSFRYLYPK---EVKYSWWSYRAAARERNV 211
Query: 275 RMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYFIVSE LK+++ + + + GSDHCP+ LE+
Sbjct: 212 GWRIDYFIVSENLKEKV------KNALIDDEVKGSDHCPIELEM 249
>gi|262067405|ref|ZP_06027017.1| exodeoxyribonuclease III [Fusobacterium periodonticum ATCC 33693]
gi|291378968|gb|EFE86486.1| exodeoxyribonuclease III [Fusobacterium periodonticum ATCC 33693]
Length = 253
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 87/282 (30%), Positives = 138/282 (48%), Gaps = 38/282 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N + +K F ++ + D+ LQ L K Y +W+ A
Sbjct: 1 MKLISWNVNGIRAAIKKG---FLDYFNEQNADIFCLQETKLSAGQLDLELKGYHQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K+ +P VS+ L +++ +GRVI EFE FY++ Y PN+ K+
Sbjct: 58 EKKGYSGTAIFTKE--EPLSVSYGL--GIEEHDKEGRVITLEFEKFYMITVYTPNS--KD 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R W+ ++++ K P++ CGDLNV+H+EID+ +P
Sbjct: 112 ELQRLDYRMVWEDEFRKYLKNLEKKKPVVVCGDLNVAHKEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
K + GFT ER +F +L+ G D +R+ + D++ +S WS +
Sbjct: 158 -KTNRRNAGFTDEERGKFTELLESG-FTDTFRYFY--PDLEHAYSWWSYRANARKNNTGW 213
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYFIVS+ L ++ E+ GSDHCPV L L
Sbjct: 214 RIDYFIVSKALDKYLVDAEIHAQT------EGSDHCPVVLFL 249
>gi|384899763|ref|YP_005775143.1| exodeoxyribonuclease [Helicobacter pylori F30]
gi|317179707|dbj|BAJ57495.1| exodeoxyribonuclease [Helicobacter pylori F30]
Length = 250
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 89/282 (31%), Positives = 140/282 (49%), Gaps = 38/282 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGINME--EHDKEGRVVTCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEF--VLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVP 216
+ R W+ ++F VL+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFRKFLKVLELK-KPVIVCGDLNVAHNEIDLENP------------- 157
Query: 217 PNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM 276
K + GF+ ER +F +L G ID +R+ + K+ + WS + +
Sbjct: 158 --KTNRKNAGFSDEERGKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKNIGW 213
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 214 RIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|308185296|ref|YP_003929429.1| exodeoxyribonuclease III [Helicobacter pylori SJM180]
gi|420454456|ref|ZP_14953289.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-8]
gi|308061216|gb|ADO03112.1| exodeoxyribonuclease III [Helicobacter pylori SJM180]
gi|393067777|gb|EJB68584.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-8]
Length = 250
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 140/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ ++ +++ +GRV+ EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGIDIE--EHDKEGRVVTCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER++F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEEREKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKDIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|256846719|ref|ZP_05552175.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_36A2]
gi|256717939|gb|EEU31496.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_36A2]
Length = 253
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 91/287 (31%), Positives = 143/287 (49%), Gaps = 48/287 (16%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N + +K F ++ + D+ LQ L K Y +W+ A
Sbjct: 1 MKLISWNVNGIRAAIKKG---FLDYFNEQNADIFCLQETKLSAGQLDLELKGYHQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K+ +P VS+ L +++ +GRVI EFE FY++ Y PN+ K+
Sbjct: 58 EKKGYSGTAIFTKQ--EPLSVSYGL--GIEEHDKEGRVITLEFEKFYMVTVYTPNS--KD 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R W+ ++++ K P++ CGDLNV+HEEID+ +P
Sbjct: 112 ELLRLDYRMTWEDEFRKYLKNLEKKKPVVVCGDLNVAHEEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
K + GFT ER +F +L G ID +R+ + +++ +SW YRG+
Sbjct: 158 -KTNRRNAGFTDEERGKFTELLDSG-FIDTFRYFY--PNLEQVYSW-----WSYRGRARE 208
Query: 277 -----RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF+VS+ L+ ++ E+ IE GSDHCPV L L
Sbjct: 209 NNAGWRIDYFVVSKGLEKNLVDAEIHTQ-IE-----GSDHCPVVLIL 249
>gi|15612480|ref|NP_224133.1| exodeoxyribonuclease III [Helicobacter pylori J99]
gi|420464550|ref|ZP_14963321.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-4]
gi|4156036|gb|AAD06994.1| EXODEOXYRIBONUCLEASE [Helicobacter pylori J99]
gi|393077779|gb|EJB78526.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-4]
Length = 250
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 140/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ ++ +++ +GRV+ EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGIDIK--EHDKEGRVVTCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER++F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEEREKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKDIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|420483017|ref|ZP_14981651.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-2]
gi|393097621|gb|EJB98214.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-2]
Length = 250
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 139/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGINME--EHDKEGRVVTCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER++F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEEREKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKDIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|254780031|ref|YP_003058138.1| exodeoxyribonuclease III [Helicobacter pylori B38]
gi|254001944|emb|CAX30201.1| Putative exodeoxyribonuclease [Helicobacter pylori B38]
Length = 250
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 139/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ + +++ +GRVI EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGI--NIEEHDKEGRVITCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER++F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEEREKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKDIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|237740967|ref|ZP_04571448.1| exodeoxyribonuclease III [Fusobacterium sp. 4_1_13]
gi|294784430|ref|ZP_06749721.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_27]
gi|229431011|gb|EEO41223.1| exodeoxyribonuclease III [Fusobacterium sp. 4_1_13]
gi|294488002|gb|EFG35357.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_27]
Length = 253
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 91/287 (31%), Positives = 143/287 (49%), Gaps = 48/287 (16%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N + +K F ++ + D+ LQ L K Y +W+ A
Sbjct: 1 MKLISWNVNGIRAAIKKG---FLDYFNEQNADIFCLQETKLSAGQLDLELKGYHQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K+ +P VS+ L +++ +GRVI EFE FY++ Y PN+ K+
Sbjct: 58 EKKGYSGTAIFTKQ--EPLTVSYGL--GIEEHDKEGRVITLEFEKFYMVTVYTPNS--KD 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R W+ ++++ K P++ CGDLNV+HEEID+ +P
Sbjct: 112 ELLRLDYRMTWEDEFRKYLKNLEKKKPVVVCGDLNVAHEEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
K + GFT ER +F +L G ID +R+ + +++ +SW YRG+
Sbjct: 158 -KTNRRNAGFTDEERGKFTELLDSG-FIDTFRYFY--PNLEQVYSW-----WSYRGRARE 208
Query: 277 -----RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF+VS+ L+ ++ E+ IE GSDHCPV L L
Sbjct: 209 NNAGWRIDYFVVSKGLEKNLVDAEIHTQ-IE-----GSDHCPVVLIL 249
>gi|390952993|ref|YP_006416751.1| exodeoxyribonuclease III [Aequorivita sublithincola DSM 14238]
gi|390418979|gb|AFL79736.1| exodeoxyribonuclease III [Aequorivita sublithincola DSM 14238]
Length = 254
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 92/287 (32%), Positives = 143/287 (49%), Gaps = 45/287 (15%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQI-------LMRALSSPPFKNYQI 94
+K ++WN N + K +F + I+ DPDV+ LQ + ALS +Y
Sbjct: 1 MKIISWNVNGVRAITK---KDFFDDISKMDPDVLCLQETKAQNEEVEEALSE--MTDYHQ 55
Query: 95 WWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPN 153
+++ A+ K Y+G A+L KK +P V++ + +++ +GRVI AE++TFYL+N Y PN
Sbjct: 56 YYNSAERKGYSGVAILSKK--EPISVTYDM--GIAEHDTEGRVICAEYDTFYLVNVYVPN 111
Query: 154 NGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLN 212
+G K E + R+ WD ++ K +I CGDLNV+H+ ID+ N
Sbjct: 112 SGQKLERLDY--RKGWDTDFHNYLKNIEKTKSVILCGDLNVAHQAIDLK----------N 159
Query: 213 GYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKY 271
NK G+T E L EG +D +R H E ++ WS +
Sbjct: 160 DKANYNK----TAGYTQIEIDGMDNFLNEG-FVDTFRHFHPET---VAYTYWSYRFKSRE 211
Query: 272 RGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
R RIDYF+VS L +++ E+ L ++GSDHCP+ LE+
Sbjct: 212 RNTGWRIDYFLVSNPLVEKVNKVEI------LSEYFGSDHCPIKLEI 252
>gi|420513485|ref|ZP_15011963.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-2b]
gi|393155902|gb|EJC56173.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-2b]
Length = 250
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 139/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGINME--EHDKEGRVVTCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER++F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDKEREKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKDIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|420421296|ref|ZP_14920374.1| exodeoxyribonuclease III [Helicobacter pylori NQ4110]
gi|393037814|gb|EJB38848.1| exodeoxyribonuclease III [Helicobacter pylori NQ4110]
Length = 250
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 138/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F D DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNNVDADVFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ + +++ +GRVI EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGINME--EHDKEGRVITCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER++F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEEREKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKDIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|420442874|ref|ZP_14941805.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-36]
gi|393056819|gb|EJB57729.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-36]
Length = 250
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 139/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGI--NIEEHDKEGRVVTCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEMEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER++F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEEREKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKDIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|425790062|ref|YP_007017982.1| exodeoxyribonuclease III [Helicobacter pylori Aklavik117]
gi|425628377|gb|AFX91845.1| exodeoxyribonuclease III [Helicobacter pylori Aklavik117]
Length = 250
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 139/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGI--NVEEHDKEGRVVTCEFESFYLVNVYVPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER++F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEEREKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKDIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|387908710|ref|YP_006339044.1| exodeoxyribonuclease III [Helicobacter pylori XZ274]
gi|387573645|gb|AFJ82353.1| exodeoxyribonuclease III [Helicobacter pylori XZ274]
Length = 250
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 138/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSIDADVFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGINME--EHDKEGRVVTCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER +F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEERGKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKNIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|383750553|ref|YP_005425656.1| exodeoxyribonuclease III [Helicobacter pylori ELS37]
gi|380875299|gb|AFF21080.1| exodeoxyribonuclease III [Helicobacter pylori ELS37]
Length = 250
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 139/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGI--NIEEHDKEGRVVTCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER++F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEEREKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKNIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|237743089|ref|ZP_04573570.1| exodeoxyribonuclease III [Fusobacterium sp. 7_1]
gi|229433385|gb|EEO43597.1| exodeoxyribonuclease III [Fusobacterium sp. 7_1]
Length = 253
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 91/287 (31%), Positives = 144/287 (50%), Gaps = 48/287 (16%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N + +K F ++ + D+ LQ L K Y +W+ A
Sbjct: 1 MKLISWNVNGIRAAIKKG---FLDYFNEQNADIFCLQETKLSAGQLDLELKGYHQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K+ +P VS+ L +++ +GRVI EFE FY++ Y PN+ K+
Sbjct: 58 EKKGYSGTAIFTKQ--EPLSVSYGL--GIEEHDKEGRVITLEFEKFYMVTVYTPNS--KD 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R W+ ++++ K P++ CGDLNV+H+EID+ +P
Sbjct: 112 ELLRLDYRMIWEDEFRKYLKNLEKKKPVVVCGDLNVAHKEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
K + GFT ER +F +L G ID +R+ + +++ +SW YRG+
Sbjct: 158 -KTNRRNAGFTDEERGKFTELLDSG-FIDTFRYFY--PNLEQVYSWWS-----YRGRARE 208
Query: 277 -----RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF+VS+EL+ ++ E+ IE GSDHCPV L L
Sbjct: 209 NNAGWRIDYFVVSKELEKNLVDAEIHTQ-IE-----GSDHCPVVLFL 249
>gi|410456343|ref|ZP_11310205.1| exodeoxyribonuclease III [Bacillus bataviensis LMG 21833]
gi|409928167|gb|EKN65287.1| exodeoxyribonuclease III [Bacillus bataviensis LMG 21833]
Length = 250
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 89/283 (31%), Positives = 146/283 (51%), Gaps = 40/283 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K V+WN N L VK F ++ D D+ +Q L S Y +W+ A
Sbjct: 1 MKLVSWNVNGLRACVKKG---FLDYFQEVDADIFCVQETKLQEGQISLDLDGYHQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ K +P V + + + E +GR++ EF+ F+L+N Y PN+ +
Sbjct: 58 IKKGYSGTAVFTK--IEPISVRYGVGTD--ESEEEGRILTLEFDDFFLVNIYTPNS--QR 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R +W+ RI E + + KP+I CGDLNV+H+EID+ +
Sbjct: 112 DLARIGYRLEWESRILEHLKELDKLKPVILCGDLNVAHQEIDLRN--------------- 156
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
+K + G GFT ER + ++L G +D+YR H D + ++W + + K R + +
Sbjct: 157 SKSNVGNSGFTDEERGKMTSLLSAG-FVDSYR--HFYPDQEGAYTW-WSYMMKVRERNIG 212
Query: 277 -RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYFIVSE+L++ + + ++ + + GSDHCP+ LE+
Sbjct: 213 WRIDYFIVSEKLRENLKSADIHCNVM------GSDHCPIVLEV 249
>gi|292670448|ref|ZP_06603874.1| exodeoxyribonuclease III [Selenomonas noxia ATCC 43541]
gi|292647858|gb|EFF65830.1| exodeoxyribonuclease III [Selenomonas noxia ATCC 43541]
Length = 250
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 90/283 (31%), Positives = 132/283 (46%), Gaps = 40/283 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQIL-----MRALSSPPFKNYQIWW 96
++FV+WN N L +K F + DV LQ L P ++ Y ++
Sbjct: 1 MRFVSWNVNGLRAALKKG---FMESFKELNADVFCLQETKMQEGQAILDLPGYEQY--FY 55
Query: 97 SLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 156
S Y+GTA+ + +P VS+ + +++ +GRVI E YL+ Y PN
Sbjct: 56 SAEKKGYSGTAIFTR--VKPLSVSYGIGIE--EHDNEGRVITMELPDVYLVTVYTPNA-- 109
Query: 157 KEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 215
K R W+ + F+L K P++ CGDLNV+H EID+ +P
Sbjct: 110 KRALERLDYRMAWEDSFRAFLLDLRAKKPVVVCGDLNVAHTEIDLKNP------------ 157
Query: 216 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 275
K + GFT ER +FG +L G +D +R L+ ++ + WS +
Sbjct: 158 ---KSNRRNAGFTDEERGKFGELLAAG-FVDTFRALYPDRTGAYTW-WSYLRHARETNAG 212
Query: 276 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF+VS EL+DRI A E+ +GSDHCPVSL L
Sbjct: 213 WRIDYFLVSAELRDRIAAAEIHSD------IFGSDHCPVSLTL 249
>gi|420449595|ref|ZP_14948464.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-44]
gi|393062395|gb|EJB63250.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-44]
Length = 250
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 139/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ ++ +++ +GRVI EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGIDIK--EHDKEGRVITCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER +F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEERGKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKDIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|421893824|ref|ZP_16324317.1| exodeoxyribonuclease III [Pediococcus pentosaceus IE-3]
gi|385273309|emb|CCG89689.1| exodeoxyribonuclease III [Pediococcus pentosaceus IE-3]
Length = 251
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 86/281 (30%), Positives = 137/281 (48%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L VK+ F + D D+ +Q L +Y +W+ A
Sbjct: 1 MKLISWNVNGLRAAVKHG---FLDVFKELDADIFCIQETKLQEGQIELELPHYYQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ KK +P V + L K++ +GRVI EFE FY++ Y PN+ +
Sbjct: 58 EKKGYSGTAIFTKK--KPLTVRYGL--GIEKHDQEGRVITLEFEKFYVITCYTPNS--QP 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ + R WD + ++ Q + KP+I+CGDLNV+H+EID+ +
Sbjct: 112 KLKRLEYRMAWDDAFRAYIDQLNQHKPVIFCGDLNVAHQEIDLKN--------------- 156
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
+K + GFT ER +F +L G D YR+ + K+ + WS + R
Sbjct: 157 DKTNHKNAGFTDEERNKFTQLLNSG-FTDTYRYFYPSKEGVYSW-WSYRFNARANNAGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S+ L ++ ++ +GSDHCPV L+L
Sbjct: 215 IDYFVSSKVLDQKLTDAQIHTE------IFGSDHCPVELDL 249
>gi|336433570|ref|ZP_08613387.1| exodeoxyribonuclease [Lachnospiraceae bacterium 2_1_58FAA]
gi|336016006|gb|EGN45803.1| exodeoxyribonuclease [Lachnospiraceae bacterium 2_1_58FAA]
Length = 250
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 139/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N + V+ F F D D+ LQ L + Y+ +W+ A
Sbjct: 1 MKLISWNVNGIRACVQKG---FLEFFREADADIFCLQETKLQAGQIELDLEGYEQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ KK +P +++ + +++ +GRVI EFE FY + Y PN+ +
Sbjct: 58 VKKGYSGTAVFTKK--KPLNMTYGI--GIEEHDQEGRVITLEFEEFYFVTVYTPNS--QN 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R KW+ ++ + KP+I+CGDLNV+H+EID+ +P
Sbjct: 112 ELARLDYRMKWESDFLAYLKKLEEKKPVIFCGDLNVAHKEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GFT ER +F +L G ID +R+ + +++ + WS + + R
Sbjct: 158 -KTNRKNAGFTDEERGKFTEMLDAG-FIDTFRYFYPDQEGIYSW-WSYRFSARAKNAGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF VSE LKDR+ ++ L GSDHCP+ L+L
Sbjct: 215 IDYFCVSECLKDRLADAKI------LTDVMGSDHCPIELDL 249
>gi|385218180|ref|YP_005779656.1| exodeoxyribonuclease [Helicobacter pylori F16]
gi|317178229|dbj|BAJ56018.1| exodeoxyribonuclease [Helicobacter pylori F16]
Length = 250
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 138/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ + ++ +GRV+ EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGINME--EHNKEGRVVTCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER++F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEEREKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKNIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|357059246|ref|ZP_09120090.1| exodeoxyribonuclease III [Selenomonas infelix ATCC 43532]
gi|355372575|gb|EHG19915.1| exodeoxyribonuclease III [Selenomonas infelix ATCC 43532]
Length = 250
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 90/284 (31%), Positives = 134/284 (47%), Gaps = 42/284 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQIL-----MRALSSPPFKNYQIWW 96
++FV+WN N L +K F D D LQ L P ++ Y ++
Sbjct: 1 MRFVSWNVNGLRAALKKG---FMESFKELDADAFCLQETKMQEGQAILDLPGYEQY--FY 55
Query: 97 SLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 156
S Y+GTA+ + +P V++ + +++ +GRVI EF YL+ Y PN+
Sbjct: 56 SAEKKGYSGTAIFTR--IRPLSVNYGIGTP--EHDHEGRVITMEFADVYLVTVYTPNS-- 109
Query: 157 KEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 215
K R W+ + F+L K P++ CGDLNV+H EID+ +P
Sbjct: 110 KNALARLDYRMVWEDAFRAFLLDLRAKKPVVVCGDLNVAHTEIDLKNP------------ 157
Query: 216 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGK 274
K + GFT ER +F +L G +D +R L+ D+ ++ WS +
Sbjct: 158 ---KSNRRNAGFTDEERGKFTELLNAG-FVDTFRALY--PDVTGAYTWWSYLRHARETNA 211
Query: 275 RMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF+VSEEL++RI A E+ +GSDHCPVSL L
Sbjct: 212 GWRIDYFLVSEELRERIAAAEIHAD------VFGSDHCPVSLTL 249
>gi|325854960|ref|ZP_08171676.1| exodeoxyribonuclease III [Prevotella denticola CRIS 18C-A]
gi|325483938|gb|EGC86878.1| exodeoxyribonuclease III [Prevotella denticola CRIS 18C-A]
Length = 249
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 87/282 (30%), Positives = 138/282 (48%), Gaps = 39/282 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L V +F + D LQ + F Y +W+ A
Sbjct: 1 MKLISWNVNGLRACVGK---DFEQQFKALNADFFCLQETKMQAGQLDISFPGYASYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
D K Y+GTA+ K +P V++ + +++ +GRVI E + FYL+ Y PN+ ++
Sbjct: 58 DKKGYSGTAIFTKH--KPLDVTYGIGMD--EHDHEGRVITLEMDDFYLVTVYTPNS--QD 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R KW+K Q+++ + KP++ CGD+NV+HEEID+ +P
Sbjct: 112 GLRRLDYRMKWEKDFQDYLHRLDRKKPVVVCGDMNVAHEEIDIKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
K + GFT ER++ +L G ID +R L+ E+ +S WS + R
Sbjct: 158 -KTNRRNAGFTDEEREKMTQLLDSG-FIDTFRTLYPEQ---VTYSWWSYRFRARERNTGW 212
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF++SE L+DR+ ++ GSDHCPV ++L
Sbjct: 213 RIDYFLISERLRDRLEDAKIHTE------IMGSDHCPVEVDL 248
>gi|288803025|ref|ZP_06408461.1| exodeoxyribonuclease III [Prevotella melaninogenica D18]
gi|288334542|gb|EFC72981.1| exodeoxyribonuclease III [Prevotella melaninogenica D18]
Length = 249
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 89/282 (31%), Positives = 137/282 (48%), Gaps = 39/282 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+KF++WN N L V EF D D LQ + F Y+ +W+ A
Sbjct: 1 MKFISWNVNGLRACVG---KEFEQQFKDLDADFFCLQETKMQAGQLDISFLGYESYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
D K Y+GTA+ K +P V++ + +++ +GRVI E + FYL+ Y PN+ ++
Sbjct: 58 DKKGYSGTAIFTKH--KPLSVTYGINID--EHDHEGRVITLEMDDFYLVTVYTPNS--QD 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R KW+ Q ++ + KP+I CGD+NV+H+EID+ +P
Sbjct: 112 GLRRLDYRMKWEDDFQAYLHKLDEKKPVIVCGDMNVAHQEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
K + GFT ER++ +L G ID +R L+ E+ +S WS + +
Sbjct: 158 -KTNRKNAGFTDEEREKMTQLLSNG-FIDTFRTLYPEQ---VTYSWWSYRFRAREKNTGW 212
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF++SE LKDR+ ++ GSDHCPV + L
Sbjct: 213 RIDYFLISERLKDRLEDAKIHTE------IMGSDHCPVEIIL 248
>gi|419419212|ref|ZP_13959471.1| exodeoxyribonuclease III [Helicobacter pylori NCTC 11637 = CCUG
17874]
gi|384372800|gb|EIE28363.1| exodeoxyribonuclease III [Helicobacter pylori NCTC 11637 = CCUG
17874]
Length = 250
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 139/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGI--NIEEHDKEGRVVTCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER +F +L +G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEERGKFSELLNDG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKNIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|421720502|ref|ZP_16159782.1| exodeoxyribonuclease III [Helicobacter pylori R046Wa]
gi|407219094|gb|EKE88911.1| exodeoxyribonuclease III [Helicobacter pylori R046Wa]
Length = 250
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 138/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ + +++ +GRVI EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGI--NIEEHDKEGRVITCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLNYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER +F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEERGKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKNIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|225026087|ref|ZP_03715279.1| hypothetical protein EUBHAL_00328 [Eubacterium hallii DSM 3353]
gi|224956574|gb|EEG37783.1| exodeoxyribonuclease III [Eubacterium hallii DSM 3353]
Length = 250
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 91/284 (32%), Positives = 144/284 (50%), Gaps = 42/284 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPF--KNYQIWWSLA 99
+K ++WN N L VK F +F D D+ +Q F + Y+ +W+ A
Sbjct: 1 MKLISWNVNGLRACVKKG---FEDFFKEADADIFCVQETKLQEGQIDFAPEGYECYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKV--SFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 156
+ K Y+GTA+ KK P KV +E+ ++ +GRVI EFE F+ + Y PN+
Sbjct: 58 EKKGYSGTAVFTKK--HPLKVWNGIGMEE----HDQEGRVITLEFEDFFFVTVYTPNS-- 109
Query: 157 KEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 215
+ E R KW+ +E++ + KP+I GDLNV+HEEID+ +P+
Sbjct: 110 QSELKRLDYRMKWEDDFREYLQELDKEKPVIMTGDLNVAHEEIDLKNPK----------- 158
Query: 216 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGK 274
NK++ GFT ER +F +L G +D++R+L+ E + ++ WS + +
Sbjct: 159 -TNKKN---AGFTQEERNKFTELLGAG-FVDSFRYLNPE--LAGAYTWWSYRFKAREKDA 211
Query: 275 RMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF+VSE K++I I + GSDHCP+ L++
Sbjct: 212 GWRIDYFVVSERWKEKI------EDAIIYKTVMGSDHCPIGLQM 249
>gi|420401021|ref|ZP_14900220.1| exodeoxyribonuclease III [Helicobacter pylori CPY3281]
gi|393016629|gb|EJB17788.1| exodeoxyribonuclease III [Helicobacter pylori CPY3281]
Length = 250
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 139/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGI--NIEEHDKEGRVVTCEFESFYLVNVYVPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER++F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEEREKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKDIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSHPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|417317886|ref|ZP_12104489.1| exodeoxyribonuclease III [Listeria monocytogenes J1-220]
gi|328473849|gb|EGF44679.1| exodeoxyribonuclease III [Listeria monocytogenes J1-220]
Length = 225
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 125/239 (52%), Gaps = 36/239 (15%)
Query: 84 LSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFE 142
L P +K+Y W+ A K Y+GTA+ K +P V + L +++ +GRVI EFE
Sbjct: 19 LDLPAYKDY---WNYAVKKGYSGTAIFTK--VEPLSVQYGL--GVPEHDTEGRVITLEFE 71
Query: 143 TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVS 201
F+++ Y PN+ + E R ++ I E+V KP++ CGDLNV+HEEID+
Sbjct: 72 EFFMVTVYTPNS--QAELKRLDYRMTFEDAILEYVKNLDKTKPVVLCGDLNVAHEEIDLK 129
Query: 202 HPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGF 261
+P K + GF+ ER +F A L G ID++R+ + D+ +
Sbjct: 130 NP---------------KTNRKNAGFSDEERAKFSAFLDAG-FIDSFRYFY--PDLTDAY 171
Query: 262 S-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
S WS + R RIDYF+VSE LKD+++ ++ + GSDHCPV LEL+
Sbjct: 172 SWWSYRMNARARNTGWRIDYFVVSERLKDKLVDAKIHADVL------GSDHCPVELELN 224
>gi|384177745|ref|YP_005559130.1| exodeoxyribonuclease III [Bacillus subtilis subsp. subtilis str.
RO-NN-1]
gi|349596969|gb|AEP93156.1| exodeoxyribonuclease III [Bacillus subtilis subsp. subtilis str.
RO-NN-1]
Length = 252
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 89/281 (31%), Positives = 144/281 (51%), Gaps = 39/281 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ---ILMRALSSPPFKNYQIWWSL 98
+K ++WN N L R +F +++ D D+I LQ I + P + Y ++W+
Sbjct: 1 MKLISWNVNGL--RAVMRKMDFLSYLKEEDADIICLQETKIQDGQVDLQP-EGYHVYWNY 57
Query: 99 ADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWK 157
A K Y+GTA+ K+ +P V + + +++ +GRVI EFE Y++ Y PN+
Sbjct: 58 AVKKGYSGTAVFSKQ--EPLHVIYGI--GVEEHDQEGRVITLEFENVYVMTVYTPNSRRG 113
Query: 158 EEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVP 216
E + R +W++ + ++L+ K P+I CGDLNV+H+EID+ +P
Sbjct: 114 LERIDY--RMQWEEALLSYILELEKKKPVILCGDLNVAHQEIDLKNP------------- 158
Query: 217 PNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG-KYRGKR 275
K + GF+ ER+ F L+ G +D++R H D++ +SW G + R
Sbjct: 159 --KANRNNAGFSDQEREAFTRFLEAG-FVDSFR--HVYPDLEGAYSWWSYRAGARDRNIG 213
Query: 276 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
RIDYF+VSE LK++I + + GSDHCPV L
Sbjct: 214 WRIDYFVVSESLKEQIEDASISADVM------GSDHCPVEL 248
>gi|420496454|ref|ZP_14995017.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-23]
gi|393110512|gb|EJC11037.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-23]
Length = 250
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 138/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGINME--EHDKEGRVVTCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER +F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEERGKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKNIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|208435390|ref|YP_002267056.1| exodeoxyribonuclease III [Helicobacter pylori G27]
gi|208433319|gb|ACI28190.1| exodeoxyribonuclease [Helicobacter pylori G27]
Length = 250
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 138/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGINME--EHDKEGRVVTCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER +F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEERGKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKNIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|167759302|ref|ZP_02431429.1| hypothetical protein CLOSCI_01649 [Clostridium scindens ATCC 35704]
gi|336422208|ref|ZP_08602360.1| exodeoxyribonuclease [Lachnospiraceae bacterium 5_1_57FAA]
gi|167663176|gb|EDS07306.1| exodeoxyribonuclease III [Clostridium scindens ATCC 35704]
gi|336009118|gb|EGN39116.1| exodeoxyribonuclease [Lachnospiraceae bacterium 5_1_57FAA]
Length = 250
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 88/285 (30%), Positives = 141/285 (49%), Gaps = 44/285 (15%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQIL-----MRALSSPPFKNYQIWW 96
+KFV+WN N + V+ F F D D+ +Q L +P + Y W
Sbjct: 1 MKFVSWNVNGIRACVQKG---FMEFFQEADADIFCIQESKMQEGQLELETPGYHQY---W 54
Query: 97 SLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNG 155
+ A K Y+GTA+ K+ +P VS+ + +++ +GRVI EFE +Y + Y PN+
Sbjct: 55 NYAKKKGYSGTAIFTKQ--EPISVSYGI--GIEEHDQEGRVITLEFEDYYFITVYTPNS- 109
Query: 156 WKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY 214
+ E R +W+ ++ + KP+I+CGDLNV+H+EID+ +P
Sbjct: 110 -QNELARLPYRMQWEDDFLAYLKKLEEAKPVIFCGDLNVAHKEIDLKNP----------- 157
Query: 215 VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRG 273
K + GFT ER +F +++ G ID +R+ + D +S WS + +
Sbjct: 158 ----KTNRKNAGFTDEERAKFTSLVDAG-FIDTFRYFY--PDAQGIYSWWSYRFSARAKN 210
Query: 274 KRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF VSE L++R++ ++ L GSDHCP+ LE+
Sbjct: 211 AGWRIDYFCVSESLEERLVDAKI------LTDVMGSDHCPIVLEM 249
>gi|34763743|ref|ZP_00144662.1| Exodeoxyribonuclease III [Fusobacterium nucleatum subsp. vincentii
ATCC 49256]
gi|27886479|gb|EAA23735.1| Exodeoxyribonuclease III [Fusobacterium nucleatum subsp. vincentii
ATCC 49256]
Length = 253
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 90/287 (31%), Positives = 143/287 (49%), Gaps = 48/287 (16%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N + +K F ++ + D+ LQ L K Y +W+ A
Sbjct: 1 MKLISWNVNGIRAAIKKG---FLDYFNEQNADIFCLQETKLSAGQLDLELKGYHQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K+ +P VS+ L +++ +GRVI EFE FY++ Y PN+ K+
Sbjct: 58 EKKGYSGTAIFTKQ--EPLSVSYGL--GIEEHDKEGRVITLEFEKFYMVTVYTPNS--KD 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R W+ ++++ K P++ CGDLNV+HEEID+ +P
Sbjct: 112 ELLRLDYRMTWEDEFRKYLKNLEKKKPVVVCGDLNVAHEEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
K + GFT ER +F +L G +D +R+ + +++ +SW YRG+
Sbjct: 158 -KTNRRNAGFTDEERGKFTELLDSG-FVDTFRYFY--PNLEQVYSW-----WSYRGRARE 208
Query: 277 -----RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF+VS+ L+ ++ E+ IE GSDHCPV L L
Sbjct: 209 NNAGWRIDYFVVSKGLEKNLVDAEIHTQ-IE-----GSDHCPVVLIL 249
>gi|16081140|ref|NP_391968.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
subtilis str. 168]
gi|221312070|ref|ZP_03593917.1| multifunctional DNA-repair enzyme [Bacillus subtilis subsp.
subtilis str. 168]
gi|221316395|ref|ZP_03598200.1| multifunctional DNA-repair enzyme [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221321308|ref|ZP_03602602.1| multifunctional DNA-repair enzyme [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221325591|ref|ZP_03606885.1| multifunctional DNA-repair enzyme [Bacillus subtilis subsp.
subtilis str. SMY]
gi|402778258|ref|YP_006632202.1| Apurinic/apyrimidinic endonuclease [Bacillus subtilis QB928]
gi|452912770|ref|ZP_21961398.1| exodeoxyribonuclease III [Bacillus subtilis MB73/2]
gi|585113|sp|P37454.1|EXOA_BACSU RecName: Full=Exodeoxyribonuclease
gi|467372|dbj|BAA05218.1| 3'-exo-deoxyribonuclease [Bacillus subtilis]
gi|2636635|emb|CAB16125.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
subtilis str. 168]
gi|402483437|gb|AFQ59946.1| Apurinic/apyrimidinic endonuclease [Bacillus subtilis QB928]
gi|407962942|dbj|BAM56182.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis BEST7613]
gi|407966954|dbj|BAM60193.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis BEST7003]
gi|452117798|gb|EME08192.1| exodeoxyribonuclease III [Bacillus subtilis MB73/2]
Length = 252
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 146/281 (51%), Gaps = 39/281 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ---ILMRALSSPPFKNYQIWWSL 98
+K ++WN N L R +F +++ D D+I LQ I + P ++Y ++W+
Sbjct: 1 MKLISWNVNGL--RAVMRKMDFLSYLKEEDADIICLQETKIQDGQVDLQP-EDYHVYWNY 57
Query: 99 ADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWK 157
A K Y+GTA+ K+ +P +V + + +++ +GRVI EFE +++ Y PN+
Sbjct: 58 AVKKGYSGTAVFSKQ--EPLQVIYGI--GVEEHDQEGRVITLEFENVFVMTVYTPNSRRG 113
Query: 158 EEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVP 216
E + R +W++ + ++L+ K P+I CGDLNV+H+EID+ +P
Sbjct: 114 LERIDY--RMQWEEALLSYILELDQKKPVILCGDLNVAHQEIDLKNP------------- 158
Query: 217 PNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG-KYRGKR 275
K + GF+ ER+ F L+ G +D++R H D++ +SW G + R
Sbjct: 159 --KANRNNAGFSDQEREAFTRFLEAG-FVDSFR--HVYPDLEGAYSWWSYRAGARDRNIG 213
Query: 276 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
RIDYF+VSE LK++I + + GSDHCPV L
Sbjct: 214 WRIDYFVVSESLKEQIEDASISADVM------GSDHCPVEL 248
>gi|420494787|ref|ZP_14993354.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-16]
gi|393109942|gb|EJC10470.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-16]
Length = 250
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 139/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGINIG--EHDKEGRVVTCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER++F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEEREKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKNIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|213021237|ref|NP_001132943.1| DNA-(apurinic or apyrimidinic site) lyase [Sus scrofa]
gi|210062866|gb|ACJ06403.1| APEX nuclease 1 [Sus scrofa]
Length = 318
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 95/323 (29%), Positives = 162/323 (50%), Gaps = 51/323 (15%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
EKE + + L D +T+ + K LK +WN + L +K + +++
Sbjct: 34 EKEAAGEGAVLYEDPPDQKTSPSG-----KSATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQ----------ILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPK 117
PD++ LQ ++ LS P +Q W + +D + Y+G LL ++C P
Sbjct: 86 EEAPDILCLQETKCSENKLPAELQELSGLP---HQYWSAPSDKEGYSGVGLLSRQC--PL 140
Query: 118 KVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV 177
KVS+ + + +++ +GRVI+AEF+ F L+ Y PN G + R++WD+ ++F+
Sbjct: 141 KVSYGIGEE--EHDQEGRVIVAEFDAFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFL 196
Query: 178 LQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFG 236
S KPL+ CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG
Sbjct: 197 KGLASHKPLVLCGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFG 241
Query: 237 AILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEM 296
+L+ L D++R L+ F W+ + + R+DYF++S L + ++
Sbjct: 242 ELLQAVPLADSFRHLYPNTAYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKI 300
Query: 297 QGHGIELEGFYGSDHCPVSLELS 319
+ + GSDHCP++L L+
Sbjct: 301 RSKAL------GSDHCPITLYLA 317
>gi|207091978|ref|ZP_03239765.1| exodeoxyribonuclease [Helicobacter pylori HPKX_438_AG0C1]
Length = 250
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 138/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGINME--EHDKEGRVVTCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRISYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER +F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEERGKFSELLNAG-FIDTFRYFYPNKERAYTW-WSYMQQARDKNIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|402584375|gb|EJW78317.1| exodeoxyribonuclease III [Wuchereria bancrofti]
Length = 314
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/283 (29%), Positives = 146/283 (51%), Gaps = 35/283 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPFKN-YQIWWSLAD 100
+K ++WN L +K + + + +PD++ALQ +N Y + + ++
Sbjct: 59 IKIISWNVAGLRALIKKSG---HSVLVEENPDIVALQETKCVEVPNELQNGYHTFLNASE 115
Query: 101 -SKYAGTALLVKKCFQPKKVSFSLE---KTALKYEPDGRVILAEFETFYLLNTYAPNNGW 156
S + G LL K+ +P KV+++ + K + GR+I+AE+E++YL+N Y PN+G
Sbjct: 116 KSGHGGVLLLTKE--EPIKVAYTFDDKSKCVVDGNGKGRIIIAEYESYYLINAYVPNSG- 172
Query: 157 KEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 215
+ +R+ WD F+ + KP+++ GDLNV+H+EID+++P+
Sbjct: 173 -RGLVNLDKRKIWDDYYLTFIKKLDLSKPVVYVGDLNVAHQEIDLANPK----------T 221
Query: 216 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 275
NK GFT ER F +L G +D +R L+ +K+ F WS + +
Sbjct: 222 NRNK----TAGFTDQERNDFTRLLDAG-FVDVFRRLNPDKEGAYTF-WSNMHNAREKNVG 275
Query: 276 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
R+DYF+VSE + +++ C++ L GSDHCP+SL +
Sbjct: 276 WRLDYFVVSERIMNKVKKCDI------LHSIKGSDHCPLSLTI 312
>gi|373465510|ref|ZP_09556970.1| exodeoxyribonuclease III [Lactobacillus kisonensis F0435]
gi|371760225|gb|EHO48917.1| exodeoxyribonuclease III [Lactobacillus kisonensis F0435]
Length = 256
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 92/283 (32%), Positives = 133/283 (46%), Gaps = 44/283 (15%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIA-----LQILMRALSSPPFKNYQIWW 96
+KF++WN N L VK +F D D +Q AL+ P + Y +
Sbjct: 5 MKFISWNVNGLRAVVK---KDFDKTFNDLDADFFCIQETKMQAGQLALTLPGYHQY---F 58
Query: 97 SLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNG 155
+ A+ K Y+GTA+ K P V + ++ +E GR I E+ TFYL+ +Y PN+G
Sbjct: 59 NYAERKGYSGTAIFTKHA--PLNVYYGIQSDEFDHE--GRAITLEYPTFYLVTSYVPNSG 114
Query: 156 WKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY 214
K + F R WD Q+++ + KP+I CGDLNV+H+ ID+ +P+
Sbjct: 115 AKLKRLDF--RMGWDVAFQQYLANLNKEKPVILCGDLNVAHKTIDLKNPQ---------- 162
Query: 215 VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRG 273
+ GFT ER F L +G +D +R H DM +S WS + R
Sbjct: 163 -----TNHHNAGFTDEERNSFSHFLDQG-FMDTFR--HFYPDMTDIYSWWSYRFHARDRN 214
Query: 274 KRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
RIDYF+ S L D I ++ L +GSDHCPV L
Sbjct: 215 AGWRIDYFVASNRLADHISDSKI------LTDVFGSDHCPVEL 251
>gi|420396107|ref|ZP_14895329.1| exodeoxyribonuclease III [Helicobacter pylori CPY1124]
gi|420402996|ref|ZP_14902182.1| exodeoxyribonuclease III [Helicobacter pylori CPY6261]
gi|393011086|gb|EJB12275.1| exodeoxyribonuclease III [Helicobacter pylori CPY1124]
gi|393020162|gb|EJB21301.1| exodeoxyribonuclease III [Helicobacter pylori CPY6261]
Length = 250
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 138/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGINME--EHDKEGRVVTCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER +F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEERGKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKNIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|420397962|ref|ZP_14897175.1| exodeoxyribonuclease III [Helicobacter pylori CPY1962]
gi|393014636|gb|EJB15807.1| exodeoxyribonuclease III [Helicobacter pylori CPY1962]
Length = 250
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 138/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGINME--EHDKEGRVVTCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER +F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEERGKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKNIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|253826925|ref|ZP_04869810.1| exodeoxyribonuclease LexA [Helicobacter canadensis MIT 98-5491]
gi|313142047|ref|ZP_07804240.1| exodeoxyribonuclease LexA [Helicobacter canadensis MIT 98-5491]
gi|253510331|gb|EES88990.1| exodeoxyribonuclease LexA [Helicobacter canadensis MIT 98-5491]
gi|313131078|gb|EFR48695.1| exodeoxyribonuclease LexA [Helicobacter canadensis MIT 98-5491]
Length = 252
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 86/284 (30%), Positives = 143/284 (50%), Gaps = 40/284 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F T + DV +Q + R ++ F NY+ +W+ A
Sbjct: 1 MKLISWNVNGLRACMNKG---FMDFFETVNADVFCIQESKMQREQATFDFPNYEEYWNSA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+G A+ K K +S + + ++ +GR+I AE++ FYL+N Y PN+ K
Sbjct: 58 EKKGYSGVAIFSK----TKPLSVAYDMGIAHHDKEGRIICAEYKDFYLVNVYTPNS--KR 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R +W+ + ++ KP+I CGDLNV+H+EID+ +P
Sbjct: 112 ELERLSYRMEWEDDFRAYLKNLEKTKPVIVCGDLNVAHQEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
K + GFT ER++ +L G D +R H ++ +SW + +GK R
Sbjct: 158 -KTNRRNAGFTDEEREKMTQLLDSG-FTDTFR--HFYPTLEGAYSW-WSYMGKARENNTG 212
Query: 277 -RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
RIDYF+ S+ L +++ ++ +GSDHCPV LE++
Sbjct: 213 WRIDYFLCSKALDSKLLDAKIYPE------VFGSDHCPVGLEIN 250
>gi|291543155|emb|CBL16265.1| exodeoxyribonuclease III [Ruminococcus bromii L2-63]
Length = 252
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 91/281 (32%), Positives = 137/281 (48%), Gaps = 38/281 (13%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLAD 100
K ++WN N L V F NF D D+ LQ L + Y +W AD
Sbjct: 3 KLISWNVNGLRACVTKG---FENFFKDVDADIFCLQETKLQEGQIDLLLEGYHQYWCYAD 59
Query: 101 SK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEE 159
K Y+GTA+ K+ +P V + + +++ +GRVI AEF+ +++ Y PN+ + E
Sbjct: 60 KKGYSGTAMFTKE--EPLNVCYGI--GIDEHDHEGRVITAEFDNCFVVTCYTPNS--QSE 113
Query: 160 ENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPN 218
R KW+ + ++ + KP+I CGDLNV+H+EID+ +P
Sbjct: 114 LKRLDYRMKWEDDFKAYLKKLEEKKPVIMCGDLNVAHKEIDLKNP--------------- 158
Query: 219 KEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMR 277
K + GFT ER + A+L +G ID YR+ + D + +S WS + + R
Sbjct: 159 KTNRKNAGFTDEERSKMTALLDDG-FIDTYRYFY--PDTEGVYSWWSYRFKAREKNAGWR 215
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYFIVS+ L+ + + G I E GSDHCPV L +
Sbjct: 216 IDYFIVSKALESK-----LDGAKIHTE-ILGSDHCPVELTI 250
>gi|347534242|ref|YP_004840912.1| Exodeoxyribonuclease [Lactobacillus sanfranciscensis TMW 1.1304]
gi|345504298|gb|AEN98980.1| Exodeoxyribonuclease [Lactobacillus sanfranciscensis TMW 1.1304]
Length = 283
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 96/291 (32%), Positives = 135/291 (46%), Gaps = 45/291 (15%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSP-------PFKNYQI 94
+ F+TWN N + +KNN+ EF N + D ++Q SP P YQ
Sbjct: 28 MNFITWNVNGIRAILKNNFYEFFN---AANADFFSVQ---ETRVSPGEVKLDLPSDYYQY 81
Query: 95 WWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNN 154
W YAGTA+ K QP KV L+ +P+GR I E+ FYL+N YAP
Sbjct: 82 WNDAERPGYAGTAVFTKH--QPLKVMLGLDGN--DQDPEGRAITLEYPNFYLVNVYAPAA 137
Query: 155 GWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNG 213
G EE + +WD+++ FV + + KP+I GDLN++HE ID+ PE
Sbjct: 138 G--EELQRLTFKEEWDQKLITFVDKLKATKPVIINGDLNIAHEPIDIYAPE--------- 186
Query: 214 YVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRG 273
E GFT AER++ +L G D YR H ++ + WS +
Sbjct: 187 ------EHRHAAGFTDAERQQMTQLLDSG-FTDIYRATHPDEPNKYTW-WSYRDHARRDN 238
Query: 274 KRMRIDYFIVSEEL-KDRIIACEMQGHGIELEGFYGSDHCPVSLELSEASS 323
R+DYFI+S L KD I M + GSDHCP+ L L+ ++
Sbjct: 239 HGWRLDYFIISNNLVKDVKITTIM-------DTVSGSDHCPLQLILNNLTT 282
>gi|331092367|ref|ZP_08341193.1| exodeoxyribonuclease [Lachnospiraceae bacterium 2_1_46FAA]
gi|330401391|gb|EGG80977.1| exodeoxyribonuclease [Lachnospiraceae bacterium 2_1_46FAA]
Length = 250
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 86/282 (30%), Positives = 140/282 (49%), Gaps = 38/282 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N + V+ F +F D D+ +Q + + Y +W+ A
Sbjct: 1 MKLISWNVNGIRACVQKG---FLDFFHQADADIFCIQESKMQEGQLQLELEGYHQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K+ +P V++ + +++ +GR+I EF FY Y PN+ +
Sbjct: 58 EKKGYSGTAVFTKE--EPLSVTYGM--GIEEHDKEGRLITLEFPEFYFATVYTPNS--QN 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R +W+ ++ + KP+I+CGDLNV+H EID+ +P
Sbjct: 112 ELARLDYRMQWETDFLAYMKKLEEKKPVIFCGDLNVAHREIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
K + GFT ER +FG +L G ID +R+ + DM+ +S WS + +
Sbjct: 158 -KTNRKNAGFTDEERGKFGELLDAG-FIDTFRYFY--PDMEGIYSWWSYRFRAREKNAGW 213
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF VSE L++R+ ++ L +GSDHCPV L+L
Sbjct: 214 RIDYFCVSESLRERLADAKI------LTYIFGSDHCPVELDL 249
>gi|160894365|ref|ZP_02075142.1| hypothetical protein CLOL250_01918 [Clostridium sp. L2-50]
gi|156864066|gb|EDO57497.1| exodeoxyribonuclease III [Clostridium sp. L2-50]
Length = 262
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 83/282 (29%), Positives = 141/282 (50%), Gaps = 38/282 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N + V N F +F D D+ +Q + Y +W+ A
Sbjct: 12 MKMISWNVNGIRACVGKN---FMDFFKEADADIFCIQESKMQEGQLQLELPGYYQYWNYA 68
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ KK +P V++ + +++ +GRVI E++ FY++ Y PN+ +
Sbjct: 69 EKKGYSGTAIFAKK--EPLSVAYGI--GIEEHDHEGRVITLEYDNFYMVTVYTPNS--QN 122
Query: 159 EENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R KW+ +E++ Q KP++ CGD+NV+H EID+ +P
Sbjct: 123 ELARLDYRMKWEDDFREYLKQLEQTKPVVVCGDMNVAHTEIDLKNP-------------- 168
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
K + GFT ER++F +L G +D +RF + D + +S WS + +
Sbjct: 169 -KTNRKNAGFTDEEREKFSTLLDSG-FVDTFRFFN--PDAEGIYSWWSYRFKAREKNAGW 224
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF+ S+ L+ R++ ++ + GSDHCPV L++
Sbjct: 225 RIDYFLTSKVLESRLVDAKIHTEVL------GSDHCPVELDI 260
>gi|420457745|ref|ZP_14956558.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-16]
gi|393072264|gb|EJB73043.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-16]
Length = 250
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 140/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + + DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVNADVFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ ++ +++ +GRVI EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGIDME--EHDKEGRVITCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER++F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEEREKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKDIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|385222881|ref|YP_005772014.1| exodeoxyribonuclease III [Helicobacter pylori SouthAfrica7]
gi|317011660|gb|ADU85407.1| exodeoxyribonuclease III [Helicobacter pylori SouthAfrica7]
Length = 250
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 86/281 (30%), Positives = 139/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D D+ +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADIFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGI--NIEEHDKEGRVVTCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLNYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER++F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEEREKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKNIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|319935137|ref|ZP_08009577.1| exodeoxyribonuclease III [Coprobacillus sp. 29_1]
gi|319809962|gb|EFW06345.1| exodeoxyribonuclease III [Coprobacillus sp. 29_1]
Length = 252
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 91/281 (32%), Positives = 139/281 (49%), Gaps = 37/281 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+ FV+WN N L +K F +F D D+ A+Q L R F+ Y +++ A
Sbjct: 1 MLFVSWNVNGLRACLKKG---FEDFFKDVDADIFAIQETKLQRNQIDLEFEGYTSYYNDA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G A+ KK +P V + + +++ +GR+I EFE FY + Y PN+ K
Sbjct: 58 IKKGYSGVAIYTKK--EPMNVIYGM--GIEEHDQEGRLITLEFEKFYFVAVYTPNS--KR 111
Query: 159 EENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R+ W+ ++ V + KP++ CGDLNV+H EID+ +
Sbjct: 112 ELERLDYRQVWEDAFRQHVQKLKESKPVVLCGDLNVAHNEIDLKN--------------- 156
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
+K + GFT ER +F +L G ID +R+ + E +M +S+ K G R
Sbjct: 157 DKTNHKNAGFTDQERAKFSELLNSG-FIDTFRYKYPETEMYSWWSYMFKAREKNAG--WR 213
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+VSE+LK+ I + + GSDHCPV +EL
Sbjct: 214 IDYFVVSEDLKENIKDAYIYTEIM------GSDHCPVGVEL 248
>gi|420397741|ref|ZP_14896957.1| exodeoxyribonuclease III [Helicobacter pylori CPY1313]
gi|393011286|gb|EJB12474.1| exodeoxyribonuclease III [Helicobacter pylori CPY1313]
Length = 250
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 138/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQQDQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGINME--EHDKEGRVVTCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER +F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEERGKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKNIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|327278210|ref|XP_003223855.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like isoform 2
[Anolis carolinensis]
Length = 306
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 90/300 (30%), Positives = 156/300 (52%), Gaps = 49/300 (16%)
Query: 33 SEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQIL----------MR 82
+ N KK LK +WN + + VK E+ ++ +PD++ LQ +R
Sbjct: 42 TSSNGKKYTLKVTSWNVDGIRAWVKKKGVEW---VSEENPDILCLQETKCAEKQLPADIR 98
Query: 83 ALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAE 140
L+ P K +W+ ++ K Y+G ALL K +P +V + + + +++ +GRVI AE
Sbjct: 99 DLAEYPHK----YWACSEDKEGYSGVALLSK--VKPLEVKYGIGEE--EHDKEGRVITAE 150
Query: 141 FETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEID 199
F +++L+ +Y PN G + R+ WD + ++ + KPLI CGDLNV+HEEID
Sbjct: 151 FPSYFLVTSYVPNAG--RGLVRLEYRQSWDVAFRSYLKGLAARKPLILCGDLNVAHEEID 208
Query: 200 VSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDC 259
+ +P+ NK++ GFT ER F +L+EG +D +R L+ +
Sbjct: 209 LKNPK------------GNKKN---AGFTPEERAGFTKLLEEG-FVDTFRHLYPDTAYAY 252
Query: 260 GFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
F W+ + + R+DYF+VS++L++ I +++ + GSDHCP++L ++
Sbjct: 253 TF-WTYMMNARSKNVGWRLDYFVVSKDLQESICDSKIRSTAL------GSDHCPITLYIA 305
>gi|421715896|ref|ZP_16155208.1| exodeoxyribonuclease III [Helicobacter pylori R037c]
gi|407221794|gb|EKE91597.1| exodeoxyribonuclease III [Helicobacter pylori R037c]
Length = 250
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 139/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D D+ +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADIFCIQESKIQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ + +++ +GRVI EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGI--NIEEHDKEGRVITCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER++F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEEREKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKDIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|420484933|ref|ZP_14983551.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-4]
gi|420515427|ref|ZP_15013890.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-4c]
gi|420517129|ref|ZP_15015584.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-4d]
gi|393103068|gb|EJC03631.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-4]
gi|393123726|gb|EJC24194.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-4c]
gi|393124943|gb|EJC25409.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-4d]
Length = 250
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 86/281 (30%), Positives = 139/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D D+ +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADIFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGI--NIEEHDKEGRVVTCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER++F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEEREKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKNIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|6980804|pdb|1DE8|B Chain B, Human ApurinicAPYRIMIDINIC ENDONUCLEASE-1 (Ape1) Bound To
Abasic Dna
gi|6980805|pdb|1DE8|A Chain A, Human ApurinicAPYRIMIDINIC ENDONUCLEASE-1 (Ape1) Bound To
Abasic Dna
gi|6980812|pdb|1DE9|A Chain A, Human Ape1 Endonuclease With Bound Abasic Dna And Mn2+ Ion
gi|6980813|pdb|1DE9|B Chain B, Human Ape1 Endonuclease With Bound Abasic Dna And Mn2+ Ion
Length = 276
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 89/296 (30%), Positives = 152/296 (51%), Gaps = 40/296 (13%)
Query: 33 SEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ-------ILMRALS 85
+ + K LK +WN + L +K + +++ PD++ LQ L L
Sbjct: 11 TSPSGKPATLKICSWNVDGLRAWIKK---KGLDWVKEEAPDILCLQETKCSENKLPAELQ 67
Query: 86 SPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETF 144
P ++Q W + +D + Y+G LL ++C P KVS+ + +++ +GRVI+AEF++F
Sbjct: 68 ELPGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGIGDE--EHDQEGRVIVAEFDSF 123
Query: 145 YLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHP 203
L+ Y PN G + R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P
Sbjct: 124 VLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNP 181
Query: 204 EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSW 263
+ NK++ GFT ER+ FG +L+ L D++R L+ F W
Sbjct: 182 K------------GNKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTF-W 225
Query: 264 SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
+ + + R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 226 TYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 275
>gi|384895292|ref|YP_005769281.1| exodeoxyribonuclease III [Helicobacter pylori 35A]
gi|315585908|gb|ADU40289.1| exodeoxyribonuclease III [Helicobacter pylori 35A]
Length = 250
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 138/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQQDQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGINME--EHDKEGRVVTCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER +F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEERGKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKNIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|384898191|ref|YP_005773619.1| exodeoxyribonuclease III [Helicobacter pylori Lithuania75]
gi|317013296|gb|ADU83904.1| exodeoxyribonuclease III [Helicobacter pylori Lithuania75]
Length = 250
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 139/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGI--NIEEHDKEGRVVTCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRISWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER++F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEEREKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKNIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|421712459|ref|ZP_16151793.1| exodeoxyribonuclease III [Helicobacter pylori R030b]
gi|407209732|gb|EKE79620.1| exodeoxyribonuclease III [Helicobacter pylori R030b]
Length = 250
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 138/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ + +++ +GRVI EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVITFTKK--EPLSVSYGINME--EHDKEGRVITCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER +F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEERGKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKDIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|420434804|ref|ZP_14933804.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-27]
gi|420503423|ref|ZP_15001957.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-41]
gi|420505338|ref|ZP_15003854.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-74]
gi|393052572|gb|EJB53518.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-27]
gi|393116870|gb|EJC17374.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-74]
gi|393149519|gb|EJC49829.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-41]
Length = 250
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 138/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGINME--EHDKEGRVVTCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER +F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEERGKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKDIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|422315442|ref|ZP_16396878.1| exodeoxyribonuclease III (xth) [Fusobacterium periodonticum D10]
gi|404592436|gb|EKA94265.1| exodeoxyribonuclease III (xth) [Fusobacterium periodonticum D10]
Length = 253
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 87/282 (30%), Positives = 140/282 (49%), Gaps = 38/282 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N + +K F ++ + D+ LQ L K Y +W+ A
Sbjct: 1 MKLISWNVNGIRAAIKKG---FLDYFNEQNADIFCLQETKLSAGQLDLELKGYHQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K+ +P VS+ L +++ +GRVI EFE FY++ Y PN+ K+
Sbjct: 58 EKKGYSGTAIFTKE--EPLSVSYGL--GIEEHDKEGRVITLEFEKFYMITVYTPNS--KD 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R W+ ++++ K P++ CGDLNV+H+EID+ +P
Sbjct: 112 ELLRLDYRMVWEDEFRKYLKNLEKKKPVVVCGDLNVAHKEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
K + GFT ER +F +L+ G ID +R+ + D++ +S WS +
Sbjct: 158 -KTNRRNAGFTDEERGKFTELLESG-FIDTFRYFY--PDLEHVYSWWSYRANARKNNTGW 213
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF+VS+ L+ ++ E+ GSDHCPV L L
Sbjct: 214 RIDYFVVSKALEKYLVDAEIHAQT------EGSDHCPVVLFL 249
>gi|420484801|ref|ZP_14983422.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-3]
gi|420515183|ref|ZP_15013650.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-3b]
gi|393098636|gb|EJB99222.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-3]
gi|393155626|gb|EJC55898.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-3b]
Length = 250
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 139/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ ++ +++ +GRVI EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGIDME--EHDKEGRVITCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER++F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEEREKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKDIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK + + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTHL------KDALIYKDILGSDHCPVGLEL 249
>gi|239624599|ref|ZP_04667630.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239520985|gb|EEQ60851.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 251
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 90/284 (31%), Positives = 139/284 (48%), Gaps = 44/284 (15%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLAD 100
KF++WN N L V F +F D DV +Q L Y +W+ A
Sbjct: 3 KFISWNVNGLRACVGKG---FLDFFKEIDADVFCIQESKLQEGQIDLDLPGYHQYWNYAL 59
Query: 101 SK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEE 159
K Y+GTA+ ++ +P VS+ + +++ +GRVI AEF +Y++ Y PN+ ++
Sbjct: 60 KKGYSGTAMFTRE--EPLSVSYGIGME--EHDTEGRVITAEFPDYYVVTCYTPNS--QDG 113
Query: 160 ENSFQRRRKWDKRIQEFVLQCSG----KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 215
R KW+ +F+ G KP+++CGDLNV+H+EID+ +P
Sbjct: 114 LARLDYRMKWE---DDFLAYLKGLEKKKPVVFCGDLNVAHKEIDLKNP------------ 158
Query: 216 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGK 274
K + GFT ER +F +L G ID +R+ + D + +S WS + +
Sbjct: 159 ---KTNRKNAGFTDEERGKFTDLLSAG-FIDTFRYFY--PDAEGIYSWWSYRFSARAKNA 212
Query: 275 RMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF VSE LKDR+++ + + GSDHCPV L +
Sbjct: 213 GWRIDYFCVSESLKDRLVSAAIHTEVM------GSDHCPVELVM 250
>gi|148225041|ref|NP_001085229.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Xenopus
laevis]
gi|47937489|gb|AAH72056.1| MGC78928 protein [Xenopus laevis]
Length = 316
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 89/302 (29%), Positives = 154/302 (50%), Gaps = 41/302 (13%)
Query: 27 ETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRA--L 84
+ + + + KK LK +WN + + +K + N++ DP ++ LQ + A L
Sbjct: 46 DAPDNVTSADGKKYTLKISSWNVDGIRAWIKK---QGLNWVREEDPHIMCLQEIKCAEKL 102
Query: 85 SSPPFKNY----QIWWSLADSK--YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVIL 138
P K+ +W+ D K Y+G A+L K +P V++ + +++ +GRVI
Sbjct: 103 LPPDVKDMPEYPHKYWACPDEKEGYSGVAMLCKD--KPLNVTYGI--GIEEHDKEGRVIT 158
Query: 139 AEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEE 197
AEF++F+++ Y PN+ R++WD + ++ S KPLI CGDLNV+H+E
Sbjct: 159 AEFDSFFVIAAYIPNSS--RGLVRLDYRQRWDVDFRAYLKGLDSKKPLILCGDLNVAHQE 216
Query: 198 IDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDM 257
ID+ +P K + PGFT ER+ FG +L EG L D++R L+ +K
Sbjct: 217 IDLKNP---------------KTNKKTPGFTPQERQGFGELLAEGYL-DSFRELYPDKPS 260
Query: 258 DCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLE 317
F W+ + + R+DYF++S+ L+ + C+++ GSDHCP++L
Sbjct: 261 AYTF-WTYMMNARAKNVGWRLDYFVLSKALRPALCDCKIRSK------VMGSDHCPITLL 313
Query: 318 LS 319
++
Sbjct: 314 MA 315
>gi|327278208|ref|XP_003223854.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like isoform 1
[Anolis carolinensis]
Length = 314
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 90/300 (30%), Positives = 156/300 (52%), Gaps = 49/300 (16%)
Query: 33 SEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQIL----------MR 82
+ N KK LK +WN + + VK E+ ++ +PD++ LQ +R
Sbjct: 50 TSSNGKKYTLKVTSWNVDGIRAWVKKKGVEW---VSEENPDILCLQETKCAEKQLPADIR 106
Query: 83 ALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAE 140
L+ P K +W+ ++ K Y+G ALL K +P +V + + + +++ +GRVI AE
Sbjct: 107 DLAEYPHK----YWACSEDKEGYSGVALLSK--VKPLEVKYGIGEE--EHDKEGRVITAE 158
Query: 141 FETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEID 199
F +++L+ +Y PN G + R+ WD + ++ + KPLI CGDLNV+HEEID
Sbjct: 159 FPSYFLVTSYVPNAG--RGLVRLEYRQSWDVAFRSYLKGLAARKPLILCGDLNVAHEEID 216
Query: 200 VSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDC 259
+ +P+ NK++ GFT ER F +L+EG +D +R L+ +
Sbjct: 217 LKNPK------------GNKKN---AGFTPEERAGFTKLLEEG-FVDTFRHLYPDTAYAY 260
Query: 260 GFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
F W+ + + R+DYF+VS++L++ I +++ + GSDHCP++L ++
Sbjct: 261 TF-WTYMMNARSKNVGWRLDYFVVSKDLQESICDSKIRSTAL------GSDHCPITLYIA 313
>gi|421719100|ref|ZP_16158390.1| exodeoxyribonuclease III [Helicobacter pylori R038b]
gi|407218577|gb|EKE88401.1| exodeoxyribonuclease III [Helicobacter pylori R038b]
Length = 250
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 138/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGI--NIEEHDKEGRVVTCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER +F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEERGKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKNIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|406666269|ref|ZP_11074037.1| Exodeoxyribonuclease [Bacillus isronensis B3W22]
gi|405385808|gb|EKB45239.1| Exodeoxyribonuclease [Bacillus isronensis B3W22]
Length = 252
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 86/283 (30%), Positives = 135/283 (47%), Gaps = 40/283 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPFK---NYQIWWSL 98
+KF++WN N + V F ++ D D LQ + + YQ W S
Sbjct: 1 MKFISWNVNGIRACVNKG---FLDYFREMDADFFCLQETKCQVGQIDLQLEGYYQYWHSA 57
Query: 99 ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
Y+GTA+ K +P V + +E E GR++ E+E FYL+NTY PN K
Sbjct: 58 VKKGYSGTAVFTKH--EPLAVYYGIENEIAADE--GRILTLEYENFYLVNTYTPNA--KR 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ + R W+ R++ ++ + K P+I+CGDLNV+H E+D+ +
Sbjct: 112 DLTRLEERLLWEDRMRIYLKELDAKKPVIYCGDLNVAHSELDIKNV-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
K + G GFT ER + +L G D +R H D+ F+W + + K R + +
Sbjct: 158 -KSNIGNSGFTYEERGKMTDLLTSG-FTDTFRHFH--PDVTDHFTW-WSYMAKVRERNIG 212
Query: 277 -RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYFI+S+ L ++I + + GSDHCP+ L+L
Sbjct: 213 WRIDYFIISDRLVEKIEEASIHSEIL------GSDHCPIVLKL 249
>gi|420528800|ref|ZP_15027190.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-25c]
gi|420528961|ref|ZP_15027349.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-25d]
gi|393132399|gb|EJC32820.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-25c]
gi|393138075|gb|EJC38457.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-25d]
Length = 250
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 138/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D DV +Q + + + FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQQEQNIFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ ++ +++ +GRVI EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGIDME--EHDKEGRVITCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER +F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEERGKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKDIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|387015594|gb|AFJ49916.1| DNA-(apurinic or apyrimidinic site) lyase-like [Crotalus
adamanteus]
Length = 316
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 91/300 (30%), Positives = 155/300 (51%), Gaps = 49/300 (16%)
Query: 33 SEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQIL----------MR 82
+ + KK LK +WN + + VK E+ N DPDV+ LQ +R
Sbjct: 52 TSSSGKKYTLKVTSWNVDGIRAWVKKKGLEWVN---KEDPDVLCLQETKCAEKQLPADIR 108
Query: 83 ALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAE 140
L+ P K +W+ ++ K Y+G ALL K +P V++ + + +++ +GRVI AE
Sbjct: 109 DLAEYPHK----FWACSNDKEGYSGVALLSKN--KPLDVTYGIGEE--EHDKEGRVITAE 160
Query: 141 FETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEID 199
F +++L+ TY PN G + R++WD+ + ++ + KPLI CGDLNV+H+EID
Sbjct: 161 FSSYFLVTTYVPNAG--RGLVRLEYRQRWDEAFRSYLKGLAARKPLILCGDLNVAHQEID 218
Query: 200 VSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDC 259
+ +P+ NK++ GFT ER F +L+ G +D +R L+
Sbjct: 219 LKNPK------------GNKKN---AGFTPEERAGFTQLLEAG-FVDTFRHLYPNTPYAY 262
Query: 260 GFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
F W+ + + R+DYF+VS+EL++ + +++ + GSDHCP++L ++
Sbjct: 263 TF-WTYMMNARAKNVGWRLDYFVVSKELQEGLCDSKIRSTAL------GSDHCPITLYVA 315
>gi|420473134|ref|ZP_14971815.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-18]
gi|393086638|gb|EJB87312.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-18]
Length = 250
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 139/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ ++ +++ +GRVI EFE FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGIDIK--EHDKEGRVITCEFELFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLNYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER++F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEEREKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKDIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKMRL------KDALIYKDILGSDHCPVGLEL 249
>gi|363900200|ref|ZP_09326706.1| exodeoxyribonuclease [Oribacterium sp. ACB1]
gi|395209879|ref|ZP_10398907.1| exodeoxyribonuclease III [Oribacterium sp. ACB8]
gi|361957054|gb|EHL10366.1| exodeoxyribonuclease [Oribacterium sp. ACB1]
gi|394704864|gb|EJF12396.1| exodeoxyribonuclease III [Oribacterium sp. ACB8]
Length = 252
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 88/280 (31%), Positives = 143/280 (51%), Gaps = 36/280 (12%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLAD 100
K ++WN N L + N+ E +F + D+ LQ L Y +W+ A
Sbjct: 3 KLISWNVNGLRAVLGKNFME--DF-QKLNADIFCLQETKLQEGQIHLDLPGYFQYWNYAI 59
Query: 101 SK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEE 159
K Y+GTA+ K+ +P V + + T +++ +GRVI EF+ +YL+ Y PN+ + E
Sbjct: 60 KKGYSGTAIFTKE--EPLSVQYGIGIT--EHDQEGRVITLEFKDYYLITVYVPNS--QNE 113
Query: 160 ENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPN 218
R +++ F+L K P+I+CGDLNV+HEEID+ +P+ LN
Sbjct: 114 LKRLPYRMEFEDAFLNFILNLEKKKPVIYCGDLNVAHEEIDLKNPD---TNHLNA----- 165
Query: 219 KEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRI 278
GF+ ER +F +L G L D++R+ + +K+ + + WS + R RI
Sbjct: 166 -------GFSDEERAKFSRVLSSGYL-DSFRYFYPDKEEEYSW-WSYRTKARDRNVGWRI 216
Query: 279 DYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
DYF+VS +LKD++++ + + GSDHCPV + L
Sbjct: 217 DYFVVSVKLKDKLLSASIH------QEVMGSDHCPVEITL 250
>gi|323340218|ref|ZP_08080482.1| exodeoxyribonuclease III [Lactobacillus ruminis ATCC 25644]
gi|417972789|ref|ZP_12613677.1| exodeoxyribonuclease III [Lactobacillus ruminis ATCC 25644]
gi|323092409|gb|EFZ35017.1| exodeoxyribonuclease III [Lactobacillus ruminis ATCC 25644]
gi|346330854|gb|EGX99085.1| exodeoxyribonuclease III [Lactobacillus ruminis ATCC 25644]
Length = 254
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 93/283 (32%), Positives = 135/283 (47%), Gaps = 36/283 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+ FV+WN N L +K N FS D D +Q L Y +W+ A
Sbjct: 1 MNFVSWNVNGLRAVLKKN---FSEVFEKLDADFFCIQETKLQEGQVELDLPGYHQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K +P+ VS+ + + +E GRVI E+ +FYL+ Y+PN+ K
Sbjct: 58 ERKGYSGTAIFTKH--EPQSVSYGIHNSEFDHE--GRVITLEYASFYLVCCYSPNSQPKL 113
Query: 159 EENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ F R ++ ++ KP+I CGDLNV+HEEID+ +P
Sbjct: 114 KRLDF--RMGFEDAFLNYLNDLKEKKPVIMCGDLNVAHEEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER +L+ G L D +RF H ++ + WS + R
Sbjct: 158 -KTNHRNAGFSNEERSCMTRLLENGYL-DTFRFFHPDETGIYSW-WSYRFNARKNNAGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 320
IDYFIVSE LKD + E+ L GSDHCPV LE ++
Sbjct: 215 IDYFIVSESLKDSLENAEI------LTDIMGSDHCPVLLETAD 251
>gi|335998084|ref|ZP_08563996.1| exodeoxyribonuclease III [Lactobacillus ruminis SPM0211]
gi|335348598|gb|EGM50099.1| exodeoxyribonuclease III [Lactobacillus ruminis SPM0211]
Length = 254
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 93/283 (32%), Positives = 136/283 (48%), Gaps = 36/283 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+ FV+WN N L +K N FS D D +Q L Y +W+ A
Sbjct: 1 MNFVSWNVNGLRAVLKKN---FSEVFEKLDADFFCIQETKLQEGQVELDLPGYHQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K +P+ VS+ ++ + +E GRVI E+ +FYL+ Y+PN+ K
Sbjct: 58 ERKGYSGTAIFTKH--EPQSVSYGIKNSEFDHE--GRVITLEYASFYLVCCYSPNSQPKL 113
Query: 159 EENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ F R ++ ++ KP+I CGDLNV+HEEID+ +P
Sbjct: 114 KRLDF--RMGFEDAFLNYLNDLKEKKPVIMCGDLNVAHEEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER +L+ G L D +RF H ++ + WS + R
Sbjct: 158 -KTNHRNAGFSNEERSCMTRLLENGYL-DTFRFFHPDETGIYSW-WSYRFNARKNNAGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 320
IDYFIVSE LKD + E+ L GSDHCPV LE ++
Sbjct: 215 IDYFIVSESLKDSLENAEI------LTDIMGSDHCPVLLETAD 251
>gi|321313648|ref|YP_004205935.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis BSn5]
gi|430756766|ref|YP_007207426.1| exodeoxyribonuclease [Bacillus subtilis subsp. subtilis str. BSP1]
gi|320019922|gb|ADV94908.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis BSn5]
gi|430021286|gb|AGA21892.1| Exodeoxyribonuclease [Bacillus subtilis subsp. subtilis str. BSP1]
Length = 252
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 145/281 (51%), Gaps = 39/281 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ---ILMRALSSPPFKNYQIWWSL 98
+K ++WN N L R +F +++ D D+I LQ I + P + Y ++W+
Sbjct: 1 MKLISWNVNGL--RAVMRKMDFLSYLKEEDADIICLQETKIQDGQVDLQP-EGYHVYWNY 57
Query: 99 ADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWK 157
A K Y+GTA+ K+ +P +V + + +++ +GRVI EFE +++ Y PN+
Sbjct: 58 AVKKGYSGTAVFSKQ--EPLQVIYGI--GVEEHDQEGRVITLEFENVFVMTVYTPNSRRG 113
Query: 158 EEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVP 216
E + R +W++ + ++L+ K P+I CGDLNV+H+EID+ +P
Sbjct: 114 LERIDY--RMQWEEALLSYILELDQKKPVILCGDLNVAHQEIDLKNP------------- 158
Query: 217 PNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG-KYRGKR 275
K + GF+ ER+ F L+ G +D++R H D++ +SW G + R
Sbjct: 159 --KANRNNAGFSDQEREAFTRFLEAG-FVDSFR--HVYPDLEGAYSWWSYRAGARDRNIG 213
Query: 276 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
RIDYF+VSE LK++I + + GSDHCPV L
Sbjct: 214 WRIDYFVVSESLKEQIEDASISADVM------GSDHCPVEL 248
>gi|159906029|ref|YP_001549691.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis C6]
gi|159887522|gb|ABX02459.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis C6]
Length = 249
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 89/283 (31%), Positives = 140/283 (49%), Gaps = 45/283 (15%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N + +KN F NF+ PD++ +Q + Y +W+ A
Sbjct: 1 MKMISWNVNGIRACLKNG---FMNFLERESPDIMCIQETKVQSGQVQLGLDGYFQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K +P +V + + +++ +GRVI +F+ +YL+N Y PN+ +
Sbjct: 58 ERKGYSGTAVFTK--IKPNEVIYGIGNN--EHDGEGRVITLKFDEYYLVNVYTPNS--QR 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R+KWD+ +V K P+I+CGDLNV+H+E+D+ +P
Sbjct: 112 GLTRLEYRQKWDQDFLNYVKTLENKKPVIFCGDLNVAHKEVDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GFT ERK F I+ G +D +R +KE D +S+ N + R R
Sbjct: 158 -KTNVKNAGFTPEERKGFDNIVNSG-FLDTFREFNKEPDNYSWWSYRFN--ARARNIGWR 213
Query: 278 IDYFIVSE----ELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
IDYF +SE LKD I E+ GSDHCPV +
Sbjct: 214 IDYFCISESLRGNLKDAFIMPEIM----------GSDHCPVGI 246
>gi|387783040|ref|YP_005793753.1| exodeoxyribonuclease [Helicobacter pylori 51]
gi|261838799|gb|ACX98565.1| exodeoxyribonuclease [Helicobacter pylori 51]
Length = 250
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 138/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGINID--EHDKEGRVVTCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER +F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEERGKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKNIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|355673738|ref|ZP_09059213.1| exodeoxyribonuclease [Clostridium citroniae WAL-17108]
gi|354814451|gb|EHE99051.1| exodeoxyribonuclease [Clostridium citroniae WAL-17108]
Length = 251
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 88/282 (31%), Positives = 137/282 (48%), Gaps = 38/282 (13%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLAD 100
K ++WN N L V F +F D DV +Q L Y +W+ A
Sbjct: 3 KLISWNVNGLRACVGKG---FLDFFQAVDADVFCIQESKLQEGQIELDLPGYHQYWNYAR 59
Query: 101 SK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEE 159
K Y+GTA+ ++ +P V++ + +++ +GRVI AEF +Y++ Y PN+ ++
Sbjct: 60 KKGYSGTAVFTRE--EPISVAYGIGME--EHDTEGRVITAEFPEYYVVTCYTPNS--QDG 113
Query: 160 ENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPN 218
R KW+ ++ KP+I+CGDLNV+H+EID+ +P
Sbjct: 114 LARLDYRMKWEDDFLSYLKGLEKNKPVIFCGDLNVAHKEIDLKNP--------------- 158
Query: 219 KEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMR 277
K + GFT ER +F +L G ID +R+ + DM+ +S WS + + R
Sbjct: 159 KTNRKNAGFTDEERGKFTDLLSAG-FIDTFRYFY--PDMEGIYSWWSYRFSARAKNAGWR 215
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
IDYF VSE LKDR+++ + GSDHCPV L ++
Sbjct: 216 IDYFCVSESLKDRLVSASIH------TDIMGSDHCPVELVVN 251
>gi|228909564|ref|ZP_04073387.1| Exodeoxyribonuclease [Bacillus thuringiensis IBL 200]
gi|228849853|gb|EEM94684.1| Exodeoxyribonuclease [Bacillus thuringiensis IBL 200]
Length = 244
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 84/264 (31%), Positives = 137/264 (51%), Gaps = 37/264 (14%)
Query: 62 EFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKK 118
+F ++ D+ LQ L + Y +W+ A K Y+GTA+ KK +P
Sbjct: 11 DFLEYLEESSADIFCLQEIKLQEGQIDLNLEGYYTYWNYAVKKGYSGTAIFSKK--EPLS 68
Query: 119 VSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVL 178
V++ L +++ +GR+I EFE FY++ Y PN+ K R KW+ + ++
Sbjct: 69 VTYGL--GIEEHDQEGRLITLEFEDFYMITLYTPNS--KRGLERLDYRMKWEDDFRSYIK 124
Query: 179 QCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGA 237
+ K +I+CGDLNV+H+EID+ +P K + PGF+ ER++F
Sbjct: 125 RLDEKKTVIFCGDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTC 169
Query: 238 ILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACE 295
IL+EG +D YR+L+ + + +SW +G R K + R+DYF+VSE +KD+I +
Sbjct: 170 ILEEG-FVDTYRYLY--PNQEGAYSWWSYRMGA-RAKNIGWRLDYFVVSERMKDQITEVK 225
Query: 296 MQGHGIELEGFYGSDHCPVSLELS 319
+ + GSDHCPV L ++
Sbjct: 226 INSEVM------GSDHCPVELYIN 243
>gi|420499520|ref|ZP_14998076.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-26]
gi|393151722|gb|EJC52025.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-26]
Length = 250
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 86/281 (30%), Positives = 140/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + + DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVNADVFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ ++ +++ +GRV+ EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLNVSYGIDME--EHDKEGRVVTCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER++F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEEREKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKDIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|420531938|ref|ZP_15030309.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-28b]
gi|393135788|gb|EJC36183.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-28b]
Length = 250
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 140/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + + DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVNADVFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ ++ +++ +GRVI EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGIDIK--EHDKEGRVITCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER++F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEEREKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKDIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|420461013|ref|ZP_14959808.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-27]
gi|393074587|gb|EJB75346.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-27]
Length = 250
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 139/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + + DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVNADVFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ + +++ +GRVI EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGINME--EHDKEGRVITCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER++F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEEREKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKDIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|385221296|ref|YP_005782768.1| exodeoxyribonuclease III [Helicobacter pylori India7]
gi|317010103|gb|ADU80683.1| exodeoxyribonuclease III [Helicobacter pylori India7]
Length = 250
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 138/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K V+WN N L + F +F + D DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLVSWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFSKK--EPLSVSYGI--NIEEHDKEGRVVTCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLNYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER +F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEERGKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKNIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|169345728|ref|ZP_02865687.1| exodeoxyribonuclease III [Clostridium perfringens C str. JGS1495]
gi|169297128|gb|EDS79244.1| exodeoxyribonuclease III [Clostridium perfringens C str. JGS1495]
Length = 250
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 88/280 (31%), Positives = 139/280 (49%), Gaps = 38/280 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L VK F ++ + D D+ LQ L + Y +W+ A
Sbjct: 1 MKLISWNVNGLRACVKKG---FLDYFKSEDADIFCLQETKLQEGQIDLDLEGYFQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ KK +P V + + ++ +GRVI EFE F+++ Y PN+ +
Sbjct: 58 EKKGYSGTAIFTKK--EPLNVYYGINME--HHDKEGRVITLEFEDFFMVTVYTPNS--QS 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSGKP-LIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E + R +W+ + ++L+ S K ++ CGDLNV+H+EID+ +P
Sbjct: 112 ELARLEYRMEWEDDFRNYLLELSSKKGVVVCGDLNVAHKEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
K + GFT ER +F +L G ID +R+ + D++ +S WS +
Sbjct: 158 -KTNRKNAGFTDEERDKFSTLLSSG-FIDTFRYFN--PDLEGVYSWWSYRFNARKNNAGW 213
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
RIDYF+VS L+DRI + + GSDHCPV L
Sbjct: 214 RIDYFLVSNNLEDRIKEAFIDTEIL------GSDHCPVKL 247
>gi|134045625|ref|YP_001097111.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis C5]
gi|132663250|gb|ABO34896.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis C5]
Length = 249
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 90/283 (31%), Positives = 141/283 (49%), Gaps = 45/283 (15%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N + +KN F +F+ PDV+ +Q + Y +W+ A
Sbjct: 1 MKMLSWNVNGIRACLKNG---FMDFLKRESPDVMCIQETKVQSGQVQLGLDGYFQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K +P +V + ++ + ++ +GRVI +F+ +YL+N Y PN+ +
Sbjct: 58 ERKGYSGTAVFTK--IKPNEVIYGIKNS--EHNGEGRVITLKFDEYYLVNVYTPNS--QR 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R+KWD+ +V K P+I+CGDLNV+H+EID+ +P
Sbjct: 112 GLTRLKYRQKWDQDFLNYVKTLENKKPVIFCGDLNVAHKEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GFT ERK F I+ G +D +R +KE D +S+ N + R R
Sbjct: 158 -KTNVKNAGFTPEERKGFDNIVNSG-FLDTFREFNKEPDNYSWWSYRFN--ARARNIGWR 213
Query: 278 IDYFIVSE----ELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
IDYF +SE LKD I E+ GSDHCPV +
Sbjct: 214 IDYFCISESLRNNLKDAFIMSEIM----------GSDHCPVGI 246
>gi|420459312|ref|ZP_14958114.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-26]
gi|393072002|gb|EJB72782.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-26]
Length = 250
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 138/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + + DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVNADVFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ + +++ +GRVI EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGINME--EHDKEGRVITCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER +F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEERGKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKNIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKNILGSDHCPVGLEL 249
>gi|420441204|ref|ZP_14940154.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-30]
gi|393054345|gb|EJB55274.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-30]
Length = 250
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 140/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + + DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVNADVFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ ++ +++ +GRVI EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGIDIK--EHDKEGRVITCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER++F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEEREKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKDIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|325269387|ref|ZP_08136004.1| exodeoxyribonuclease III [Prevotella multiformis DSM 16608]
gi|324988308|gb|EGC20274.1| exodeoxyribonuclease III [Prevotella multiformis DSM 16608]
Length = 249
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 87/282 (30%), Positives = 136/282 (48%), Gaps = 39/282 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L V +F D D LQ + F Y +W+ A
Sbjct: 1 MKLISWNVNGLRACVGK---DFEQQFKALDADFFCLQETKMQAGQLDISFPGYTSYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
D K Y+GTA+ K +P V++ + +++ +GRVI E + FYL+ Y PN+ ++
Sbjct: 58 DKKGYSGTAIFTKH--KPLDVTYGIGMD--EHDHEGRVITLEMDDFYLVTVYTPNS--QD 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R KW+K Q ++ KP++ CGD+NV+HEEID+ +P
Sbjct: 112 GLRRLDYRMKWEKDFQNYLHWLDEKKPVVVCGDMNVAHEEIDIKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
K + GFT ER++ +L G ID +R L+ E+ +S WS + R
Sbjct: 158 -KTNRRNAGFTDEEREKMTQLLDSG-FIDTFRSLYPEQ---VTYSWWSYRFRARERNTGW 212
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF++SE L+DR+ ++ GSDHCP+ ++L
Sbjct: 213 RIDYFLISERLRDRLEDAKIHTE------IMGSDHCPIEVDL 248
>gi|301788284|ref|XP_002929556.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like isoform 1
[Ailuropoda melanoleuca]
gi|301788286|ref|XP_002929557.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like isoform 2
[Ailuropoda melanoleuca]
gi|301788288|ref|XP_002929558.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like isoform 3
[Ailuropoda melanoleuca]
gi|281345899|gb|EFB21483.1| hypothetical protein PANDA_019762 [Ailuropoda melanoleuca]
Length = 318
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 93/320 (29%), Positives = 162/320 (50%), Gaps = 45/320 (14%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
EKE + + L D +T+ + K LK +WN + L +K + +++
Sbjct: 34 EKEAAGEGSVLYEDPPDQKTSPSG-----KSATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQILMRALSSPPFK-------NYQIWWSLADSK-YAGTALLVKKCFQPKKVS 120
PD++ LQ + + P + ++Q W + +D + Y+G LL ++C P KVS
Sbjct: 86 EEAPDILCLQETKCSENKLPAELQELSGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVS 143
Query: 121 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ- 179
+ + + +++ +GRVI+AEF+ F L+ Y PN G + R++WD+ ++F+
Sbjct: 144 YGIGEE--EHDQEGRVIVAEFDAFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGL 199
Query: 180 CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 239
S KPL+ CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L
Sbjct: 200 ASRKPLVLCGDLNVAHEEIDLRNPK------------GNKKN---AGFTPQERQGFGELL 244
Query: 240 KEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGH 299
+ L D++R L+ F W+ + + R+DYF++S L + +++
Sbjct: 245 QAVPLADSFRHLYPNTAYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSK 303
Query: 300 GIELEGFYGSDHCPVSLELS 319
+ GSDHCP++L L+
Sbjct: 304 AL------GSDHCPITLYLA 317
>gi|296090736|ref|NP_001171688.1| DNA-(apurinic or apyrimidinic site) lyase [Gallus gallus]
gi|194722849|dbj|BAG66138.1| APEX nuclease [Gallus gallus]
Length = 300
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 87/297 (29%), Positives = 148/297 (49%), Gaps = 43/297 (14%)
Query: 34 EENSKKDPLKF--VTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ-------ILMRAL 84
EE + P F +WN + L V+ ++ + + PDV+ LQ + L
Sbjct: 35 EETADGRPYNFKVTSWNVDGLRAWVRKGGLQW---LQSEAPDVVCLQETKCGAESIPSEL 91
Query: 85 SSPPFKNYQIWWS-LADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFET 143
S P ++ W S + S Y+G LL + P +V+ + +++ +GRV+ AEF +
Sbjct: 92 SQLPHLPHKFWGSAVGRSGYSGVGLLSRTA--PIRVTHGIGIE--EHDAEGRVLTAEFPS 147
Query: 144 FYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSH 202
Y+++ Y PN+G N Q R++WD + F+ + KP++ CGDLNV+H EID+ +
Sbjct: 148 VYVVSAYVPNSG--RGLNRLQYRQRWDGAFKSFLQRLDAQKPVVLCGDLNVAHREIDLRN 205
Query: 203 PEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS 262
P K + PGFT ER FGA+L +G +D++R L+ + F
Sbjct: 206 P---------------KSNRRSPGFTQEERDAFGALL-DGGFLDSFRLLYPDVPNAYTF- 248
Query: 263 WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
W+ + R R+DYF++S L++ + +++ + GSDHCP++L L+
Sbjct: 249 WTYMGGARERNVGWRLDYFLLSTRLREALCDSKIRSAAM------GSDHCPITLYLA 299
>gi|312067871|ref|XP_003136947.1| exodeoxyribonuclease III family protein [Loa loa]
Length = 306
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 86/283 (30%), Positives = 143/283 (50%), Gaps = 35/283 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPFKN--YQIWWSLA 99
+K ++WN L +K + + + +PD++ALQ +N Y +
Sbjct: 51 IKIISWNVAGLRAWIK---KDGHSILVKENPDIVALQETKCVEVPNELQNGYYSFLNTSE 107
Query: 100 DSKYAGTALLVKKCFQPKKVSFSLE---KTALKYEPDGRVILAEFETFYLLNTYAPNNGW 156
S + G LL K+ +P KV+++ + K+ L GR+I+AE+E +YL+N Y PN+G
Sbjct: 108 KSGHGGVLLLTKE--EPIKVTYTFDDKSKSGLDGNGKGRIIIAEYENYYLINAYVPNSG- 164
Query: 157 KEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 215
+ +R+ WD F+ + KP+++ GDLNV+H+EID+++P+
Sbjct: 165 -RGLVNLDKRKFWDDCYFSFIKKLDLNKPIVYVGDLNVAHQEIDLANPK----------T 213
Query: 216 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 275
NK GFT ER F +L G +D +R L+ EK+ F WS + +
Sbjct: 214 NYNK----TAGFTDQERNDFTRLLDAG-FVDVFRRLNPEKEGVYTF-WSNMRNAREKNVG 267
Query: 276 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
R+DYF+VSE + +++ C++ L GSDHCP+SL +
Sbjct: 268 WRLDYFVVSERIMNKVKECDI------LCSVKGSDHCPLSLTI 304
>gi|393911285|gb|EFO27125.2| exodeoxyribonuclease III [Loa loa]
Length = 313
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 86/283 (30%), Positives = 143/283 (50%), Gaps = 35/283 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPFKN--YQIWWSLA 99
+K ++WN L +K + + + +PD++ALQ +N Y +
Sbjct: 58 IKIISWNVAGLRAWIK---KDGHSILVKENPDIVALQETKCVEVPNELQNGYYSFLNTSE 114
Query: 100 DSKYAGTALLVKKCFQPKKVSFSLE---KTALKYEPDGRVILAEFETFYLLNTYAPNNGW 156
S + G LL K+ +P KV+++ + K+ L GR+I+AE+E +YL+N Y PN+G
Sbjct: 115 KSGHGGVLLLTKE--EPIKVTYTFDDKSKSGLDGNGKGRIIIAEYENYYLINAYVPNSG- 171
Query: 157 KEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 215
+ +R+ WD F+ + KP+++ GDLNV+H+EID+++P+
Sbjct: 172 -RGLVNLDKRKFWDDCYFSFIKKLDLNKPIVYVGDLNVAHQEIDLANPK----------T 220
Query: 216 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 275
NK GFT ER F +L G +D +R L+ EK+ F WS + +
Sbjct: 221 NYNK----TAGFTDQERNDFTRLLDAG-FVDVFRRLNPEKEGVYTF-WSNMRNAREKNVG 274
Query: 276 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
R+DYF+VSE + +++ C++ L GSDHCP+SL +
Sbjct: 275 WRLDYFVVSERIMNKVKECDI------LCSVKGSDHCPLSLTI 311
>gi|352518551|ref|YP_004887868.1| exodeoxyribonuclease [Tetragenococcus halophilus NBRC 12172]
gi|348602658|dbj|BAK95704.1| exodeoxyribonuclease [Tetragenococcus halophilus NBRC 12172]
Length = 275
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 91/302 (30%), Positives = 142/302 (47%), Gaps = 54/302 (17%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFS----NFITTFDPDVIALQILMRALSSPPFK----- 90
+K ++WN +SL L +N + S + I +D DVIA+Q + + P K
Sbjct: 1 MKLISWNIDSLNAALTSDSNRAQLSRDVLDTIAEYDADVIAIQETKLSANGPTQKHIDIL 60
Query: 91 -----NYQIWWSL----ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEF 141
+Y+I W A YAGT L K +P ++F + +GR+I EF
Sbjct: 61 AERLPDYEIAWRSSEEPARKSYAGTMFLYKNMLEPT-ITFPEIGAPDTMDQEGRIITLEF 119
Query: 142 ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDV 200
++ Y PN G + ++R WD++ +E+++ KP+I GD NV+H EID+
Sbjct: 120 PNCFVTQVYTPNAGGNLDR--LEKREAWDEKYREYLVALDEQKPVIASGDYNVAHTEIDL 177
Query: 201 SHPE--FFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMD 258
+HP+ F+A GFT ER F +L G D +R++H D++
Sbjct: 178 AHPDRNHFSA-----------------GFTDEERTNFTTLLNNG-FADTFRYVH--GDIE 217
Query: 259 CGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
+SW G + K RIDYF+VS+ LK+++I EM G DH P+ L
Sbjct: 218 GHYSWWGQRVKTSKINNSGWRIDYFLVSDRLKNQVITSEMIDSGKR------QDHTPIFL 271
Query: 317 EL 318
E+
Sbjct: 272 EV 273
>gi|386753431|ref|YP_006226650.1| exodeoxyribonuclease III [Helicobacter pylori Shi169]
gi|386754997|ref|YP_006228215.1| exodeoxyribonuclease III [Helicobacter pylori Shi112]
gi|384559689|gb|AFI00157.1| exodeoxyribonuclease III [Helicobacter pylori Shi169]
gi|384561255|gb|AFI01722.1| exodeoxyribonuclease III [Helicobacter pylori Shi112]
Length = 250
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 138/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQQDQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGI--NIEEHDKEGRVVTCEFESFYLVNVYVPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER +F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEERGKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKNIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|421715822|ref|ZP_16155136.1| exodeoxyribonuclease III [Helicobacter pylori R036d]
gi|407214330|gb|EKE84179.1| exodeoxyribonuclease III [Helicobacter pylori R036d]
Length = 250
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 86/281 (30%), Positives = 139/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ ++ +++ +GRV+ EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGIDME--EHDKEGRVVTCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER++F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEEREKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKDIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK + + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTHL------KDALIYKDILGSDHCPVGLEL 249
>gi|258648040|ref|ZP_05735509.1| exodeoxyribonuclease III [Prevotella tannerae ATCC 51259]
gi|260851895|gb|EEX71764.1| exodeoxyribonuclease III [Prevotella tannerae ATCC 51259]
Length = 250
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 88/282 (31%), Positives = 135/282 (47%), Gaps = 38/282 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+KF++WN N L R + F + D D LQ + F Y+ +W+ A
Sbjct: 1 MKFISWNVNGL--RAVDG-KGFRDIFRAIDADFFCLQETKMQEGQLDIAFDGYESYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K K +S + +++ +GRVI E + FYL+ Y PN+ ++
Sbjct: 58 EKKGYSGTAIFTKH----KPLSVQIGLGIDEHDHEGRVITLELDDFYLVCVYTPNS--QD 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R W++ Q + + KP+I CGD+NV+H+EID+ +P
Sbjct: 112 ELRRLDYRMIWEEAFQAHLHKLDAHKPVIVCGDMNVAHQEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
K + GFT ER++ +L G ID +R+ H D+ +S WS + +
Sbjct: 158 -KTNRRNAGFTDEEREKMTQLLSNG-FIDTFRYFH--PDLTGAYSWWSYRFRAREKNTGW 213
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF+VSE LK R++ + GSDHCPV L L
Sbjct: 214 RIDYFLVSERLKPRLVEANIHN------DIMGSDHCPVELIL 249
>gi|420419486|ref|ZP_14918576.1| exodeoxyribonuclease III [Helicobacter pylori NQ4076]
gi|393031392|gb|EJB32464.1| exodeoxyribonuclease III [Helicobacter pylori NQ4076]
Length = 250
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 138/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGI--NIEEHDKEGRVVTCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER +F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEERGKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKDIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|188528295|ref|YP_001910982.1| exodeoxyribonuclease III [Helicobacter pylori Shi470]
gi|188144535|gb|ACD48952.1| exodeoxyribonuclease [Helicobacter pylori Shi470]
Length = 250
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 137/281 (48%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K V+WN N L + F +F + D DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLVSWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQQDQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ + +++ +GRV+ EFE FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGINIE--EHDKEGRVVTCEFELFYLVNVYVPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER +F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEERGKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKNIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSHPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|126651518|ref|ZP_01723722.1| exodeoxyribonuclease [Bacillus sp. B14905]
gi|126591771|gb|EAZ85867.1| exodeoxyribonuclease [Bacillus sp. B14905]
Length = 251
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 87/284 (30%), Positives = 139/284 (48%), Gaps = 42/284 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+KF++WN N + + F +F + D +Q +Y+ +W+ A
Sbjct: 1 MKFISWNVNGIRACLGKG---FLDFFHQIEADFFCIQETKCQAGQVELALDDYEQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ K P V + + + +GR+I E++ FYL+N Y PN +
Sbjct: 58 QKKGYSGTAIFTKHT--PLSVMYGVGDE--DSQDEGRIITLEYQNFYLVNVYTPNA--QR 111
Query: 159 EENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ R+ ++ S KP+++CGDLNV+H EID+ +
Sbjct: 112 DLARLPLRLTWEDRLAGYLQDLNSKKPVVYCGDLNVAHTEIDLKNA-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLH-KEKDMDCGFSWSGNPIGKYRGKRM 276
K + G GFT ER +F +L G +D++R+ H E D F+W + + K R + +
Sbjct: 158 -KSNVGNSGFTYEERAKFSELLASG-FVDSFRYKHPNETDH---FTW-WSYMNKVRERNI 211
Query: 277 --RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYFIVSE+LK++I + H GSDHCP+ L+L
Sbjct: 212 GWRIDYFIVSEQLKNQIDQATIHPH------IMGSDHCPIELQL 249
>gi|197303592|ref|ZP_03168630.1| hypothetical protein RUMLAC_02320 [Ruminococcus lactaris ATCC
29176]
gi|197297326|gb|EDY31888.1| exodeoxyribonuclease III [Ruminococcus lactaris ATCC 29176]
Length = 250
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 139/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N + V+ F +F D D+ +Q + + + Y +W+ A
Sbjct: 1 MKLISWNVNGIRACVQKG---FLDFFHEADADIFCIQETKMQEGQLNLELERYHQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ KK +P VS+ L +++ +GRVI EFE FY + Y PN+ +
Sbjct: 58 VKKGYSGTAVFTKK--EPLSVSYGL--GIEEHDQEGRVITCEFEDFYFVTVYTPNS--QS 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R KW+ + ++ + KP+I GDLNV+H+EID+ +P
Sbjct: 112 ELARLDYRMKWEDDFRAYLKKLEKKKPVIVTGDLNVAHKEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GFT ER +F +L G ID +R+ + +++ + WS + + R
Sbjct: 158 -KTNRKNAGFTDEERGKFTELLDAG-FIDTFRYFYPDQEGIYSW-WSYRFSARAKNAGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF VSE LKDR+ ++ L GSDHCP+ L+L
Sbjct: 215 IDYFCVSECLKDRLADAKI------LTEVMGSDHCPIELDL 249
>gi|150388422|ref|YP_001318471.1| exodeoxyribonuclease III Xth [Alkaliphilus metalliredigens QYMF]
gi|149948284|gb|ABR46812.1| exodeoxyribonuclease III Xth [Alkaliphilus metalliredigens QYMF]
Length = 251
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 91/283 (32%), Positives = 143/283 (50%), Gaps = 40/283 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K V+WN N + VK F ++ D D+ +Q L + Y+ +W+ A
Sbjct: 1 MKLVSWNVNGIRACVKKG---FLDYFNEVDADIFCIQESKLQEGQIELDLEGYEQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ K+ +P V + + + + +GRV+ EF+ FYL+N Y PN+ K
Sbjct: 58 VKKGYSGTAVFTKE--KPISVKYGVGEEEDE--EEGRVLTLEFDQFYLVNVYTPNS--KR 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R W+ + + + KP+I CGDLNV+HEEID+ +P+
Sbjct: 112 GLERLDGRMIWEDEFRAHLKELDAIKPVILCGDLNVAHEEIDLKNPK------------S 159
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
NK+ GFT ER++ +L G ID++R+ + D++ +SW + +GK R +
Sbjct: 160 NKK---SAGFTNEEREKMTELLTSG-FIDSFRYFY--PDLEGAYSW-WSYMGKARERNAG 212
Query: 277 -RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF+VSE LK+++ + GSDHCPV LEL
Sbjct: 213 WRIDYFVVSERLKNQLKEAAIHPQ------IMGSDHCPVVLEL 249
>gi|385230800|ref|YP_005790716.1| exodeoxyribonuclease III [Helicobacter pylori Puno135]
gi|344337238|gb|AEN19199.1| exodeoxyribonuclease III [Helicobacter pylori Puno135]
Length = 250
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 86/281 (30%), Positives = 138/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D D+ +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADIFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGI--NIEEHDKEGRVVTCEFESFYLVNVYVPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER +F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEERGKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKNIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|109946643|ref|YP_663871.1| exodeoxyribonuclease III [Helicobacter acinonychis str. Sheeba]
gi|109713864|emb|CAJ98872.1| exodeoxyribonuclease [Helicobacter acinonychis str. Sheeba]
Length = 250
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 86/281 (30%), Positives = 137/281 (48%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D D+ +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADIFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ + +++ +GR+I EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGI--NIEEHDKEGRIITCEFESFYLVNIYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ + F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLNYRMSWEVEFRRFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER +F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEERGKFNELLNTG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKNIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNSLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|406027905|ref|YP_006726737.1| exodeoxyribonuclease III [Lactobacillus buchneri CD034]
gi|405126394|gb|AFS01155.1| exodeoxyribonuclease III [Lactobacillus buchneri CD034]
Length = 256
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 86/280 (30%), Positives = 134/280 (47%), Gaps = 36/280 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+KF++WN N L VK+ +F+ D D +Q + YQ +++ A
Sbjct: 1 MKFISWNVNGLRAAVKH---DFAETFKKLDADFFCIQETKMQEGQLELDLPGYQQYFNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K P V++ + +E GR I E+ FYL+ +Y PN+G
Sbjct: 58 ERKGYSGTAIFTKHA--PLDVTYGINSDEFNHE--GRAITLEYPDFYLVTSYVPNSGAGL 113
Query: 159 EENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ F R W+K +++ + K P+I CGDLNV+H+EID+ +P+
Sbjct: 114 KRLDF--RMGWNKAFYQYLTELDAKKPVILCGDLNVAHKEIDLKNPQ------------- 158
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
+ GFT ER+ F +LK G +D +R + ++ D WS + R R
Sbjct: 159 --SNHHNAGFTDEERQDFTNLLKAG-FMDTFRHFYPDQ-TDIYSWWSYRFHSRDRNAGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLE 317
IDYF+ S L D I ++ L +GSDHCPV L+
Sbjct: 215 IDYFVASNRLADEIEDSKI------LTDVFGSDHCPVELD 248
>gi|386760800|ref|YP_006234017.1| ExoA protein [Bacillus sp. JS]
gi|384934083|gb|AFI30761.1| ExoA [Bacillus sp. JS]
Length = 252
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 90/281 (32%), Positives = 147/281 (52%), Gaps = 39/281 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ---ILMRALSSPPFKNYQIWWSL 98
+K ++WN N L R +F +++ D D+I LQ I + P + Y ++W+
Sbjct: 1 MKLISWNVNGL--RAVMRKMDFLSYLKEEDADIICLQETKIQDGQVDLQP-EGYHVYWNY 57
Query: 99 ADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWK 157
A K Y+GTA+ K+ +P +V + + +++ +GRVI EFE +++ Y PN+
Sbjct: 58 AVKKGYSGTAVFSKQ--EPLRVMYGI--GIEEHDQEGRVITLEFENVFVMTIYTPNSRRG 113
Query: 158 EEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVP 216
E + R +W++ + ++L+ K P+I CGDLNV+H+EID+ +P
Sbjct: 114 LERIDY--RMQWEEALLSYILELDKKKPVILCGDLNVAHQEIDLKNP------------- 158
Query: 217 PNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG-KYRGKR 275
K + GF+ ER F +L+ G +D++R H D++ +SW G + R
Sbjct: 159 --KANRKNAGFSDQERGAFSRLLEAG-YVDSFR--HVYPDLEGAYSWWSYRAGARDRNIG 213
Query: 276 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
RIDYF+VSE LK++I + GI + GSDHCPV L
Sbjct: 214 WRIDYFVVSESLKEQI-----EDAGIS-KDVMGSDHCPVEL 248
>gi|420417863|ref|ZP_14916958.1| exodeoxyribonuclease III [Helicobacter pylori NQ4044]
gi|393031044|gb|EJB32117.1| exodeoxyribonuclease III [Helicobacter pylori NQ4044]
Length = 250
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 85/281 (30%), Positives = 140/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + + D+ +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVNADIFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ ++ +++ +GRV+ EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGIDIK--EHDKEGRVVTCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEMEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER++F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEEREKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKNIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|391340077|ref|XP_003744372.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like
[Metaseiulus occidentalis]
Length = 347
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 94/297 (31%), Positives = 147/297 (49%), Gaps = 39/297 (13%)
Query: 29 TETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPP 88
T +S + +K K VTWN N + +KN E+ I D DV LQ + P
Sbjct: 82 TRIASSDYGRKGSWKIVTWNVNGIRSWLKNGGLEY---IEEEDADVYCLQETKCSEEKLP 138
Query: 89 -----FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFE 142
+K Y+ ++ D + Y+G ++ +K + SLE+ ++ +GRVI EFE
Sbjct: 139 PEVTNYKGYKSYFLAGDKEGYSGVGIMSRKTPLNVEYGLSLEE----HDSEGRVITLEFE 194
Query: 143 TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVS 201
F+L+N+Y PN G R WD+ +++++ K +I GDLNV+H EID+
Sbjct: 195 EFFLVNSYVPNAG--RGLVRLDYRLTWDRDFRKYLVGLKKKKSVILTGDLNVAHNEIDLK 252
Query: 202 HPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGF 261
+P+ NK++ GFT ER+ +L+EG +D +R L+ E++ F
Sbjct: 253 NPK------------TNKKN---AGFTEEERQGLTDLLEEG-FVDTFRKLYPEREGAYTF 296
Query: 262 SWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
W+ + + R+DYFIVSE+L D +I E++ GSDHCPV L L
Sbjct: 297 -WTYMMNARAKNVGWRLDYFIVSEDLIDNVIDNEIRST------VMGSDHCPVVLHL 346
>gi|393199117|ref|YP_006460959.1| exonuclease III [Solibacillus silvestris StLB046]
gi|327438448|dbj|BAK14813.1| exonuclease III [Solibacillus silvestris StLB046]
Length = 252
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 85/283 (30%), Positives = 135/283 (47%), Gaps = 40/283 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPFK---NYQIWWSL 98
+KF++WN N + V F ++ D D LQ + + YQ W S
Sbjct: 1 MKFISWNVNGIRACVNKG---FLDYFREMDADFFCLQETKCQVGQIDLQLEGYYQYWHSA 57
Query: 99 ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
Y+GTA+ K +P V + +E E GR++ E+E FYL+NTY PN K
Sbjct: 58 VKKGYSGTAVFTKH--EPLAVYYGIENEIAADE--GRILTLEYENFYLVNTYTPNA--KR 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ + R W+ R++ ++ + K P+I+CGDLNV+H E+D+ +
Sbjct: 112 DLTRLEERLLWEDRMRIYLKELDAKKPVIYCGDLNVAHSELDIKNV-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
K + G GFT ER + +L G D +R H D+ F+W + + K R + +
Sbjct: 158 -KSNIGNSGFTYEERGKMTDLLTSG-FTDTFRHFH--PDVTDHFTW-WSYMAKVRERNIG 212
Query: 277 -RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYFI+S+ L +++ + + GSDHCP+ L+L
Sbjct: 213 WRIDYFIISDRLVEKVEEASIHSEIL------GSDHCPIVLKL 249
>gi|261880757|ref|ZP_06007184.1| exodeoxyribonuclease III [Prevotella bergensis DSM 17361]
gi|270332533|gb|EFA43319.1| exodeoxyribonuclease III [Prevotella bergensis DSM 17361]
Length = 267
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 92/295 (31%), Positives = 144/295 (48%), Gaps = 46/295 (15%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITT--------FDPDVIALQ--ILMRALSSPPFKN 91
+KFV+WN N L VK N I+ D D LQ + F
Sbjct: 1 MKFVSWNVNGLRACVKPKVDAEGNVISKGFEAYFNELDADFFCLQETKMQAGQLDLQFNG 60
Query: 92 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 150
Y+ +W+ A+ K Y+GTA+ K +P V+ + +++ +GRVI E+ FYL+N Y
Sbjct: 61 YRSYWNYAERKGYSGTAIYTKH--EPMNVACGM--GIEEHDNEGRVITLEYPEFYLVNVY 116
Query: 151 APNNG----WKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEF 205
PN+ + + R KW++ + ++ + + KP+I CGDLNV+H+EID+ +
Sbjct: 117 TPNSQESLPGEVKPKRLGYRMKWEEDFRAYIKRLNETKPVIVCGDLNVAHQEIDIKNA-- 174
Query: 206 FAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WS 264
K + GFT ER++ +L G ID +R ++ E+ + +S WS
Sbjct: 175 -------------KTNRNNAGFTDEEREKMTILLDNG-FIDTFRTMYPEQVI---YSWWS 217
Query: 265 GNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
+ R RIDYF+VSE L+++I+ + YGSDHCPV LEL+
Sbjct: 218 YRFRARERNTGWRIDYFLVSERLRNQIVDARIHTE------IYGSDHCPVELELN 266
>gi|184154634|ref|YP_001842974.1| exodeoxyribonuclease [Lactobacillus fermentum IFO 3956]
gi|227513882|ref|ZP_03943931.1| exodeoxyribonuclease III [Lactobacillus fermentum ATCC 14931]
gi|183225978|dbj|BAG26494.1| exodeoxyribonuclease [Lactobacillus fermentum IFO 3956]
gi|227087743|gb|EEI23055.1| exodeoxyribonuclease III [Lactobacillus fermentum ATCC 14931]
Length = 279
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 90/306 (29%), Positives = 138/306 (45%), Gaps = 50/306 (16%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNF------ITTFDPDVIALQILMRALSSPP------- 88
++F++WN +S+ + I PDVIA+Q + S P
Sbjct: 1 MRFISWNIDSINAALTGTSARAEETRAVLEKIKAAAPDVIAIQETKLSKSGPTKKHQGVL 60
Query: 89 ---FKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEF 141
F Y + W A YAGT L K+ PK V++ + +GR+I EF
Sbjct: 61 AELFAGYTVVWRSSVEPARKGYAGTMYLYKESLTPK-VTYPTIGAPEPMDEEGRIITLEF 119
Query: 142 ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDV 200
E FYL Y PN+G + R++WD R +E++ + KP+I GD NV+HEEID+
Sbjct: 120 ENFYLTEVYTPNSGTGLKR--LAERQEWDDRYREYLTELDRQKPVIASGDFNVAHEEIDL 177
Query: 201 SHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCG 260
+HP + GFT ER++F A+L G D++R LH D
Sbjct: 178 AHP---------------ANNHHSAGFTDEEREKFTALLAAG-FTDSFRSLH--PDETGA 219
Query: 261 FSWSGN--PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
+SW K RIDY++VS+ L D++++ M G DH P+ L++
Sbjct: 220 YSWWAQRAVTSKVNNSGWRIDYWLVSDRLADQVVSSTMIDSGER------RDHAPIQLDI 273
Query: 319 SEASSD 324
+ ++D
Sbjct: 274 NIPAAD 279
>gi|385229195|ref|YP_005789128.1| exodeoxyribonuclease III [Helicobacter pylori Puno120]
gi|344335633|gb|AEN16077.1| exodeoxyribonuclease III [Helicobacter pylori Puno120]
Length = 250
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 86/281 (30%), Positives = 138/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D D+ +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADIFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ + +++ +GR+I EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGINIE--EHDKEGRIITCEFESFYLVNVYVPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER +F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEERGKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKNIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|420411264|ref|ZP_14910396.1| exodeoxyribonuclease III [Helicobacter pylori NQ4228]
gi|393030053|gb|EJB31132.1| exodeoxyribonuclease III [Helicobacter pylori NQ4228]
Length = 250
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 138/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + + DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVNADVFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ + +++ +GRVI EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGINME--EHDKEGRVITCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFKKFLKTLELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER +F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEERGKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKNIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|373454216|ref|ZP_09546089.1| exodeoxyribonuclease III (xth) [Dialister succinatiphilus YIT
11850]
gi|371936051|gb|EHO63787.1| exodeoxyribonuclease III (xth) [Dialister succinatiphilus YIT
11850]
Length = 254
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 96/285 (33%), Positives = 141/285 (49%), Gaps = 44/285 (15%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQIL-----MRALSSPPFKNYQIWW 96
LK+++WN N L +K F + D D LQ L P + Y W
Sbjct: 4 LKYISWNVNGLRACIKKG---FMDAFNALDADCFCLQETKLQPHQIELELPGYHQY--WN 58
Query: 97 SLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 156
S Y+GTA+ K+ +P V++ L +++ +GR+I A+F + YLL Y PN+
Sbjct: 59 SAVKKGYSGTAIFTKE--EPLSVTYGLGIE--EHDQEGRLITADFGSHYLLCCYTPNSQR 114
Query: 157 KEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 215
S+ R W+K ++E++ + + KP+I CGDLNV+HE+ID+++P
Sbjct: 115 GLARLSY--RMTWEKAMKEYMTKLAAEKPVILCGDLNVAHEDIDIANP------------ 160
Query: 216 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLH-KEKDMDCGFS-WSGNPIGKYRG 273
N ++ GFT ER R +L G D++R LH EKD +S WS + R
Sbjct: 161 ASNHKN---AGFTDEERGRMTDLLAAG-FTDSFRHLHPDEKD---AYSWWSYFAKARERN 213
Query: 274 KRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF+VS KD I +G I + GSDHCPV L+L
Sbjct: 214 VGWRIDYFLVSSVWKDHI-----KGASIHSD-ILGSDHCPVELDL 252
>gi|420489725|ref|ZP_14988317.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-11]
gi|420523659|ref|ZP_15022077.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-11b]
gi|393105146|gb|EJC05697.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-11]
gi|393126008|gb|EJC26460.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-11b]
Length = 250
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 86/281 (30%), Positives = 139/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + + DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSINADVFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGINME--EHDKEGRVVTCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMNWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER++F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEEREKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKDIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|410725723|ref|ZP_11364086.1| exodeoxyribonuclease III [Clostridium sp. Maddingley MBC34-26]
gi|410601734|gb|EKQ56234.1| exodeoxyribonuclease III [Clostridium sp. Maddingley MBC34-26]
Length = 252
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 88/278 (31%), Positives = 138/278 (49%), Gaps = 36/278 (12%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLAD 100
K ++WN N L VK F +F D D+ +Q L + +W+ A+
Sbjct: 3 KLISWNVNGLRACVKKG---FLDFFKESDADIFCIQETKLQEGQIDLDLDGFNSYWNYAE 59
Query: 101 SK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEE 159
K Y+GTA+ K+ K+ +E+ ++ +GRV+ EF FYL+N Y PN+ K+
Sbjct: 60 KKGYSGTAVFTKEEPLSVKIGIGIEE----HDNEGRVLTLEFNDFYLVNVYTPNS--KQG 113
Query: 160 ENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPN 218
R W+ ++++ + K P+I CGDLNV+H+EID+ +P
Sbjct: 114 LERLDYRMVWEDVFRQYLKELEKKKPVILCGDLNVAHKEIDLKNP--------------- 158
Query: 219 KEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRI 278
K + GFT ER++ +L G ID YRF + +K+ + WS + RI
Sbjct: 159 KVNRKNAGFTDEEREKITQLLDSG-FIDTYRFFYPDKEGAYSW-WSYRFNARANNAGWRI 216
Query: 279 DYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
DYF+VSE LKD++ ++ +++E GSDHCPV L
Sbjct: 217 DYFLVSESLKDKLEDAKIH---MDIE---GSDHCPVEL 248
>gi|365903535|ref|ZP_09441358.1| exodeoxyribonuclease III Xth [Lactobacillus malefermentans KCTC
3548]
Length = 254
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 88/279 (31%), Positives = 129/279 (46%), Gaps = 36/279 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+KF++WN N L VK +F D D +Q + S NY +++ A
Sbjct: 1 MKFISWNVNGLRAVVKK---DFEAEFEALDADFFCIQETKMQENQLSLDLPNYHQYYNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GT + K +P V + + L +E GR I E+++F+L+ Y PN+G
Sbjct: 58 EQKGYSGTGIFTKH--EPLSVHYGINVPELDHE--GRTITLEYKSFFLVTCYTPNSG--H 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R +WD Q ++L+ + KP+I CGDLNV+H EID+ P
Sbjct: 112 ELKRLDFRMQWDPAFQSYLLKLNKRKPVIICGDLNVAHSEIDLKSP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
+ GFT ER+ F +L G ID YR+ + +K + WS + R
Sbjct: 158 -TSNHHNAGFTDEERENFTTLLDSG-FIDTYRYFYPDKKEKYSW-WSYRTKAREVNSGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
IDYF+ S+ L RI + L GSDHCPV L
Sbjct: 215 IDYFLASKSLAPRISDANI------LTNVMGSDHCPVVL 247
>gi|332024107|gb|EGI64323.1| Recombination repair protein 1 [Acromyrmex echinatior]
Length = 356
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 93/300 (31%), Positives = 147/300 (49%), Gaps = 48/300 (16%)
Query: 31 TSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ-------ILMRA 83
T S + KK LK TWN + + +K + ++ IT D D+IALQ +
Sbjct: 93 TKSNQEGKKHNLKICTWNVSGIRAVIKKHGLDY---ITKEDADIIALQETKCDKGKMPDE 149
Query: 84 LSSPPFKNYQIWWSLADSK---YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAE 140
+ P + +Y DSK Y G AL K+ +P V + L + ++ +GR+I E
Sbjct: 150 VKLPGYHHY-----FLDSKKPGYCGVALFSKE--KPISVKYGLNDST--FDTEGRIITVE 200
Query: 141 FETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEID 199
F F+++N Y PN G K + +R +W+K ++ + + KP+I CGD+NV+H+EID
Sbjct: 201 FPEFFVINVYVPNAGQKLV--TLPKRLEWNKLFKKHIEELDQKKPVIICGDMNVAHQEID 258
Query: 200 VSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDC 259
+ +P K + GFT ER L G ID +R L+ E +
Sbjct: 259 LKNP---------------KTNTKNAGFTKEERNDMTDFLAAG-FIDTFRSLYPEIEGAY 302
Query: 260 GFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
F WS + + R+DYF++SE +K+++ C+ I + YGSDHCPV L ++
Sbjct: 303 TF-WSYFANARSKNIGWRLDYFLISERIKNKV--CD----NIIRKDVYGSDHCPVILYIN 355
>gi|420433080|ref|ZP_14932089.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-24]
gi|420508405|ref|ZP_15006911.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-24b]
gi|420510180|ref|ZP_15008676.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-24c]
gi|420532271|ref|ZP_15030634.1| exodeoxyribonuclease III [Helicobacter pylori Hp M1]
gi|420535643|ref|ZP_15033985.1| exodeoxyribonuclease III [Helicobacter pylori Hp M3]
gi|420537346|ref|ZP_15035676.1| exodeoxyribonuclease III [Helicobacter pylori Hp M4]
gi|420540833|ref|ZP_15039141.1| exodeoxyribonuclease III [Helicobacter pylori Hp M6]
gi|420543901|ref|ZP_15042190.1| exodeoxyribonuclease III [Helicobacter pylori Hp M9]
gi|393051948|gb|EJB52898.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-24]
gi|393115197|gb|EJC15708.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-24b]
gi|393116707|gb|EJC17212.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-24c]
gi|393139902|gb|EJC40275.1| exodeoxyribonuclease III [Helicobacter pylori Hp M1]
gi|393143291|gb|EJC43635.1| exodeoxyribonuclease III [Helicobacter pylori Hp M3]
gi|393144901|gb|EJC45232.1| exodeoxyribonuclease III [Helicobacter pylori Hp M4]
gi|393147453|gb|EJC47777.1| exodeoxyribonuclease III [Helicobacter pylori Hp M6]
gi|393158898|gb|EJC59154.1| exodeoxyribonuclease III [Helicobacter pylori Hp M9]
Length = 250
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 86/281 (30%), Positives = 140/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + + DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVNADVFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ ++ +++ +GRV+ EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGIDIK--EHDKEGRVVTCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER++F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEEREKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKDIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|421720757|ref|ZP_16160034.1| exodeoxyribonuclease III [Helicobacter pylori R055a]
gi|407225541|gb|EKE95311.1| exodeoxyribonuclease III [Helicobacter pylori R055a]
Length = 250
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 139/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + + DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVNADVFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ + +++ +GRVI EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGI--NIEEHDKEGRVITCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER++F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEEREKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKDIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|385811883|ref|YP_005848274.1| exodeoxyribonuclease [Lactobacillus fermentum CECT 5716]
gi|299782782|gb|ADJ40780.1| Exodeoxyribonuclease [Lactobacillus fermentum CECT 5716]
Length = 279
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 90/306 (29%), Positives = 138/306 (45%), Gaps = 50/306 (16%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNF------ITTFDPDVIALQILMRALSSPP------- 88
++F++WN +S+ + I PDVIA+Q + S P
Sbjct: 1 MRFISWNIDSINAALTGTSARAEETRAVLEKIKAAAPDVIAIQETKLSKSGPTKKHQGVL 60
Query: 89 ---FKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEF 141
F Y + W A YAGT L K+ PK V++ + +GR+I EF
Sbjct: 61 AELFAGYTVVWRSSVEPARKGYAGTMYLYKESLTPK-VTYPTIGAPEPMDKEGRIITLEF 119
Query: 142 ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDV 200
E FYL Y PN+G + R++WD R +E++ + KP+I GD NV+HEEID+
Sbjct: 120 ENFYLTEVYTPNSGTGLKR--LAERQEWDDRYREYLTELDRQKPVIASGDFNVAHEEIDL 177
Query: 201 SHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCG 260
+HP + GFT ER++F A+L G D++R LH D
Sbjct: 178 AHP---------------ANNHHSAGFTDEEREKFTALLAAG-FTDSFRSLH--PDETGA 219
Query: 261 FSWSGN--PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
+SW K RIDY++VS+ L D++++ M G DH P+ L++
Sbjct: 220 YSWWAQRAVTSKVNNSGWRIDYWLVSDRLADQVVSSTMIDSGER------RDHAPIQLDI 273
Query: 319 SEASSD 324
+ ++D
Sbjct: 274 NIPAAD 279
>gi|407014279|gb|EKE28316.1| hypothetical protein ACD_3C00079G0002 [uncultured bacterium (gcode
4)]
Length = 255
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 89/285 (31%), Positives = 140/285 (49%), Gaps = 40/285 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPP------FKNYQIW 95
+KF++WN N + +K F +I PD+IA+Q + P Y I+
Sbjct: 1 MKFISWNVNWIRASIKK---WFIEYIQDEKPDIIAMQEVKATEDQFPARLEMELMWYSIY 57
Query: 96 WSLA-DSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNN 154
W+ A + Y+ TA+ K+ +P +V++ L +++ + R+I EFE FY + Y PN+
Sbjct: 58 WNAAFKNWYSWTAIFTKE--KPLEVTYWL--WIWEHDNEWRIITLEFEKFYFITVYTPNS 113
Query: 155 GWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNG 213
K E N + R+ WD +++ + KP++ C DLNV+H+EID+ +P+
Sbjct: 114 --KRELNRLEYRQLWDSLFLDYMRRLEVNKPVVVCWDLNVAHKEIDLKNPK--------- 162
Query: 214 YVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRG 273
PN+ GFT ER+ F L G ID +R+ + EK + WS + R
Sbjct: 163 ---PNR---WNAGFTDEEREGFQKFLNAG-FIDTFRYFYPEKTEAYSW-WSNFAFARDRN 214
Query: 274 KRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF+ S LKD + ++ GSDHCPV LE+
Sbjct: 215 IGWRIDYFLTSWGLKDNL------KDAFIMDQILGSDHCPVWLEI 253
>gi|420405856|ref|ZP_14905029.1| exodeoxyribonuclease III [Helicobacter pylori CPY6271]
gi|393021675|gb|EJB22805.1| exodeoxyribonuclease III [Helicobacter pylori CPY6271]
Length = 250
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 86/281 (30%), Positives = 138/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ + +++ +GR++ EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGINME--EHDKEGRMVTCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER +F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEERGKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKNIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|308183626|ref|YP_003927753.1| exodeoxyribonuclease III [Helicobacter pylori PeCan4]
gi|384893489|ref|YP_005767582.1| exodeoxyribonuclease III [Helicobacter pylori Cuz20]
gi|308062786|gb|ADO04674.1| exodeoxyribonuclease III [Helicobacter pylori Cuz20]
gi|308065811|gb|ADO07703.1| exodeoxyribonuclease III [Helicobacter pylori PeCan4]
Length = 250
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 86/281 (30%), Positives = 138/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D D+ +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADIFCIQESKMQQDQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGINIE--EHDKEGRVVTCEFESFYLVNVYVPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER +F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEERGKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKNIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|89897437|ref|YP_520924.1| hypothetical protein DSY4691 [Desulfitobacterium hafniense Y51]
gi|219670588|ref|YP_002461023.1| exodeoxyribonuclease III [Desulfitobacterium hafniense DCB-2]
gi|89336885|dbj|BAE86480.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|219540848|gb|ACL22587.1| exodeoxyribonuclease III Xth [Desulfitobacterium hafniense DCB-2]
Length = 250
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 89/281 (31%), Positives = 133/281 (47%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPFK--NYQIWWSLA 99
+K ++WN N L + F +F D+ LQ PF+ Y +W+ A
Sbjct: 1 MKLISWNVNGLRACLNKG---FMDFFQQEQADIFCLQETKLQEEQIPFQLEGYHAYWNFA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ KK +P VS+ + + +++ +GRVI EF+TFYL+ Y PN+ +
Sbjct: 58 QKKGYSGTAVFAKK--EPLSVSYGIGQE--EHDQEGRVITLEFDTFYLVTVYTPNS--QR 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++ KP+I CGDLNV+H EID+ +P
Sbjct: 112 DLARLDYRMIWEAEFLGYLKNLEKSKPVILCGDLNVAHTEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GFT ER +F +LK G ID +R + +K + WS + R
Sbjct: 158 -KTNRKNAGFTDEERAKFSELLKNG-FIDTFRHFNPDKK-EAYTWWSYMFNARANNAGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF VSE LK+ + + + GSDHCPV LE+
Sbjct: 215 IDYFCVSESLKNEL------KDAMIYDQIMGSDHCPVGLEI 249
>gi|260909404|ref|ZP_05916112.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 472 str. F0295]
gi|260636496|gb|EEX54478.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 472 str. F0295]
Length = 249
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 86/282 (30%), Positives = 138/282 (48%), Gaps = 39/282 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+KF++WN N L V +F N + D D LQ + F Y+ +W+ A
Sbjct: 1 MKFISWNVNGLRAVVGK---DFENIFKSLDADFFCLQETKMQAGQLDLQFDGYESFWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
D K Y+GTA+ + +P V++ + +++ +GRVI E TF+L+ Y PN+ ++
Sbjct: 58 DKKGYSGTAIYTRH--KPLNVTYGIGID--QHDHEGRVITLEMPTFFLVTVYTPNS--QD 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R +W+ Q ++ KP+I CGD+NV+H+EID+ +P
Sbjct: 112 ELRRLDYRMQWEDDFQAYLHDLDKRKPVIVCGDMNVAHQEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
K + GFT ER++ +L G D +R+ + E + +S WS + R
Sbjct: 158 -KTNRRNAGFTDEERQKMTQLLGAG-FTDTFRWKYPE---EITYSWWSYRFKARERNTGW 212
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF+VS+ L+ ++ ++ GSDHCPV LEL
Sbjct: 213 RIDYFLVSDRLQSEVLDAKIH------TDILGSDHCPVELEL 248
>gi|116493341|ref|YP_805076.1| exonuclease III [Pediococcus pentosaceus ATCC 25745]
gi|116103491|gb|ABJ68634.1| Exonuclease III [Pediococcus pentosaceus ATCC 25745]
Length = 251
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 84/281 (29%), Positives = 137/281 (48%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L VK+ F + D D+ +Q L +Y +W+ A
Sbjct: 1 MKLISWNVNGLRAAVKHG---FLDVFKELDADIFCIQETKLQEGQIELELPHYYQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ KK +P V + L +++ +GR+I EFE FY++ Y PN+ +
Sbjct: 58 EKKGYSGTAIFTKK--KPLAVRYGL--GIEEHDQEGRIITLEFEKFYVITCYTPNS--QP 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ + R WD + ++ Q + KP+I+CGDLNV+H+EID+ +
Sbjct: 112 KLKRLEYRMAWDDAFRAYIDQLNQHKPVIFCGDLNVAHQEIDLKN--------------- 156
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
+K + GFT ER +F +L G D YR+ + K+ + WS + R
Sbjct: 157 DKTNHKNAGFTDEERNKFTQLLNSG-FTDTYRYFYPSKEGVYSW-WSYRFNARANNAGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S+ L ++ ++ +GSDHCPV L+L
Sbjct: 215 IDYFVSSKALDQKLTDAQIHTE------IFGSDHCPVELDL 249
>gi|223278400|ref|NP_788782.2| DNA-(apurinic or apyrimidinic site) lyase [Bos taurus]
gi|113912167|gb|AAI22611.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Bos taurus]
gi|296483354|tpg|DAA25469.1| TPA: DNA-(apurinic or apyrimidinic site) lyase [Bos taurus]
gi|440900925|gb|ELR51950.1| DNA-(apurinic or apyrimidinic site) lyase [Bos grunniens mutus]
Length = 318
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 92/320 (28%), Positives = 162/320 (50%), Gaps = 45/320 (14%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
EKE + L D +T+ + K LK +WN + L +K + +++
Sbjct: 34 EKEAVGEGAVLYEDPPDQKTSPSG-----KSATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQILMRALSSPPFK-------NYQIWWSLADSK-YAGTALLVKKCFQPKKVS 120
PD++ LQ + + P + ++Q W + +D + Y+G LL ++C P KVS
Sbjct: 86 EEAPDILCLQETKCSENKLPVELQELSGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVS 143
Query: 121 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ- 179
+ + + +++ +GRVI+AE++ F L+ Y PN G + R++WD+ ++F+
Sbjct: 144 YGIGEE--EHDQEGRVIVAEYDAFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGL 199
Query: 180 CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 239
S KPL+ CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L
Sbjct: 200 ASRKPLVLCGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELL 244
Query: 240 KEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGH 299
+ L D++R L+ F W+ + + R+DYF++S+ L + +++
Sbjct: 245 QAVPLTDSFRHLYPNTAYAYTF-WTYMMNARSKNVGWRLDYFLLSQSLLPALCDSKIRSK 303
Query: 300 GIELEGFYGSDHCPVSLELS 319
+ GSDHCP++L L+
Sbjct: 304 AL------GSDHCPITLYLA 317
>gi|154497021|ref|ZP_02035717.1| hypothetical protein BACCAP_01314 [Bacteroides capillosus ATCC
29799]
gi|150273420|gb|EDN00548.1| hypothetical protein BACCAP_01314 [Pseudoflavonifractor capillosus
ATCC 29799]
Length = 250
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 87/284 (30%), Positives = 141/284 (49%), Gaps = 42/284 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQIL-----MRALSSPPFKNYQIWW 96
+K ++WN N L + F D D+ ++Q L P +K Y W
Sbjct: 1 MKLISWNVNGLRACLGKG---FLESFAALDADIFSIQETKMQPGQAELDLPGYKQY---W 54
Query: 97 SLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNG 155
+ A+ K Y+GTA+ + +P V++ + +++ +GR I EFE FYL+N Y PN
Sbjct: 55 NSAEKKGYSGTAVFTR--LEPLNVTYGIGSE--EHDREGRAITLEFEDFYLVNCYVPNA- 109
Query: 156 WKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY 214
+ E R +W+ ++ ++L+ S KP+I+CGDLNV+H+EID+ +
Sbjct: 110 -QRELTRLDWRMEWEDALRAYLLELDSRKPVIYCGDLNVAHQEIDLKNA----------- 157
Query: 215 VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGK 274
K + G GFT ER + +L+ G +D++R L+ +K + WS + +
Sbjct: 158 ----KSNRGNAGFTDEERAKMTQLLEAG-FVDSFRHLYPDKTGAYSW-WSYMFHAREKNA 211
Query: 275 RMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF+VS+ + D+I G I GSDHCPV L++
Sbjct: 212 GWRIDYFLVSKSIADKI------GDSIIHPEIMGSDHCPVELDI 249
>gi|385227690|ref|YP_005787614.1| exodeoxyribonuclease III [Helicobacter pylori SNT49]
gi|344332603|gb|AEN17633.1| exodeoxyribonuclease III [Helicobacter pylori SNT49]
Length = 250
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 138/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K V+WN N L + F +F + D DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLVSWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+N Y PN+ ++
Sbjct: 58 LKKGYSGVVTFSKK--EPLSVSYGI--NIEEHDKEGRVVTCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER +F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEERGKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKDIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|428281769|ref|YP_005563504.1| multifunctional DNA-repair enzyme [Bacillus subtilis subsp. natto
BEST195]
gi|291486726|dbj|BAI87801.1| multifunctional DNA-repair enzyme [Bacillus subtilis subsp. natto
BEST195]
Length = 252
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 145/281 (51%), Gaps = 39/281 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ---ILMRALSSPPFKNYQIWWSL 98
+K ++WN N L R +F +++ D D+I LQ I + P + Y ++W+
Sbjct: 1 MKLISWNVNGL--RAVMRKMDFLSYLKEEDADIICLQETKIQDGQVDLQP-EGYHVYWNY 57
Query: 99 ADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWK 157
A K Y+GTA+ K+ +P +V + + +++ +GRVI EFE +++ Y PN+
Sbjct: 58 AVKKGYSGTAVFSKQ--EPLQVIYGIGLE--EHDQEGRVITLEFENVFVITVYTPNSRRG 113
Query: 158 EEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVP 216
E + R +W++ + ++L+ K P+I CGDLNV+H+EID+ +P
Sbjct: 114 LERIDY--RMQWEEALLSYILELDQKKPVILCGDLNVAHQEIDLKNP------------- 158
Query: 217 PNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG-KYRGKR 275
K + GF+ ER+ F L+ G +D++R H D++ +SW G + R
Sbjct: 159 --KANRNNAGFSDQEREAFTRFLEAG-FVDSFR--HVYPDLEGAYSWWSYRAGARDRNIG 213
Query: 276 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
RIDYF+VSE LK++I + + GSDHCPV L
Sbjct: 214 WRIDYFVVSERLKEQIEDASISADVM------GSDHCPVEL 248
>gi|384895029|ref|YP_005769078.1| exodeoxyribonuclease III [Helicobacter pylori Sat464]
gi|308064283|gb|ADO06170.1| exodeoxyribonuclease III [Helicobacter pylori Sat464]
Length = 250
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 137/281 (48%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K V+WN N L + F +F + D D+ +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLVSWNVNGLRACMTKG---FMDFFNSVDADIFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ + +++ +GRV+ EFE FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGINIE--EHDKEGRVVTCEFELFYLVNVYVPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER +F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEERGKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKNIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSHPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|108563814|ref|YP_628130.1| exodeoxyribonuclease III [Helicobacter pylori HPAG1]
gi|107837587|gb|ABF85456.1| exodeoxyribonuclease [Helicobacter pylori HPAG1]
Length = 250
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 86/281 (30%), Positives = 138/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D DV +Q + + ++ F+ Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQQEQNTFEFRGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGI--NIEEHDKEGRVVTCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER +F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEERGKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKNIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|425790226|ref|YP_007018143.1| exodeoxyribonuclease III [Helicobacter pylori Aklavik86]
gi|425628541|gb|AFX89081.1| exodeoxyribonuclease III [Helicobacter pylori Aklavik86]
Length = 250
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 138/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGI--NIEEHDKEGRVVTCEFESFYLVNVYVPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMGWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER +F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEERGKFNELLDAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKNIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|420481469|ref|ZP_14980108.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-1]
gi|420510358|ref|ZP_15008848.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-1b]
gi|393094477|gb|EJB95086.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-1]
gi|393122099|gb|EJC22576.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-1b]
Length = 250
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 86/281 (30%), Positives = 139/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + + DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVNADVFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGINME--EHDKEGRVVTCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMNWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER++F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEEREKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKDIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|331702430|ref|YP_004399389.1| exodeoxyribonuclease III Xth [Lactobacillus buchneri NRRL B-30929]
gi|329129773|gb|AEB74326.1| exodeoxyribonuclease III Xth [Lactobacillus buchneri NRRL B-30929]
Length = 256
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 85/280 (30%), Positives = 135/280 (48%), Gaps = 36/280 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+KF++WN N L VK+ +F+ D D +Q + YQ +++ A
Sbjct: 1 MKFISWNVNGLRAAVKH---DFAETFQQLDADFFCIQETKMQEGQLELDLPGYQQYFNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K P V++ + +E GR I E+ FYL+ +Y PN+G
Sbjct: 58 ERKGYSGTAIFTKHA--PMHVTYGINSDEFDHE--GRAITLEYPDFYLVTSYVPNSGAGL 113
Query: 159 EENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ F R W+K +++ + K P+I CGDLNV+H+EI++ +P+
Sbjct: 114 KRLDF--RMGWNKAFYQYLTELDAKKPVILCGDLNVAHKEIELKNPQ------------- 158
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
+ GFT ER+ F +LK G +D +R + ++ D WS + R R
Sbjct: 159 --SNHHNAGFTDEERQDFTKLLKAG-FMDTFRHFYPDQ-TDIYSWWSYRFHSRDRNAGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLE 317
IDYF+ S L D+I ++ L +GSDHCPV L+
Sbjct: 215 IDYFVASNRLADQIEDSKI------LTDVFGSDHCPVELD 248
>gi|423137872|ref|ZP_17125515.1| exodeoxyribonuclease III (xth) [Fusobacterium nucleatum subsp.
animalis F0419]
gi|371959030|gb|EHO76727.1| exodeoxyribonuclease III (xth) [Fusobacterium nucleatum subsp.
animalis F0419]
Length = 253
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 91/287 (31%), Positives = 143/287 (49%), Gaps = 48/287 (16%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N + VK F ++ + D+ LQ L K Y +W+ A
Sbjct: 1 MKLISWNVNGIRAAVKKG---FLDYFNEQNADIFCLQETKLSAGQLDLELKGYHQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K+ +P VS+ L +++ +GRVI EFE FY++ Y PN+ K+
Sbjct: 58 EKKGYSGTAIFTKQ--EPLSVSYGL--GIEEHDKEGRVITLEFEKFYMVTVYTPNS--KD 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R W+ ++++ K P++ CGDLNV+H+EID+ +P
Sbjct: 112 ELLRLDYRMVWEDEFRKYLKNLEKKKPVVACGDLNVAHKEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
K + GFT ER +F +L G ID +R+ + +++ +SW YRG+
Sbjct: 158 -KTNRRNAGFTDEERGKFTELLDSG-FIDTFRYFY--PNLEQVYSW-----WSYRGRARE 208
Query: 277 -----RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF+VS+ L+ ++ E+ IE GSDHCPV L L
Sbjct: 209 NNAGWRIDYFVVSKGLEKNLVDAEIHTQ-IE-----GSDHCPVVLFL 249
>gi|386751875|ref|YP_006225095.1| exodeoxyribonuclease III [Helicobacter pylori Shi417]
gi|384558133|gb|AFH98601.1| exodeoxyribonuclease III [Helicobacter pylori Shi417]
Length = 250
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 137/281 (48%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQQDQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ + +++ +GRV+ EFE FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGINIE--EHDKEGRVVTCEFELFYLVNVYVPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER +F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEERGKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKNIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSHPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|420462757|ref|ZP_14961538.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-3]
gi|393078158|gb|EJB78902.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-3]
Length = 250
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 86/281 (30%), Positives = 139/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + + DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVNADVFCIQESKMQQEQNAFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGINME--EHDKEGRVVTCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER++F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEEREKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKDIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|418030667|ref|ZP_12669152.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
subtilis str. SC-8]
gi|351471726|gb|EHA31839.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
subtilis str. SC-8]
Length = 252
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 144/281 (51%), Gaps = 39/281 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ---ILMRALSSPPFKNYQIWWSL 98
+K ++WN N L R +F +++ D D+I LQ I + P + Y ++W+
Sbjct: 1 MKLISWNVNGL--RAVMRKMDFLSYLKEEDADIICLQETKIQDGQVDLQP-EGYHVYWNY 57
Query: 99 ADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWK 157
A K Y+GTA+ K+ +P +V + + +++ +GRVI EFE +++ Y PN+
Sbjct: 58 AVKKGYSGTAVFSKQ--EPLQVIYGI--GVEEHDQEGRVITLEFENVFVMTVYTPNSRRG 113
Query: 158 EEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVP 216
E + R +W++ + ++L+ K P+I CGDLNV+H+EID+ +P
Sbjct: 114 LERIDY--RMQWEEALLSYILELDQKKPVILCGDLNVAHQEIDLKNP------------- 158
Query: 217 PNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG-KYRGKR 275
K + GF+ ER F L+ G +D++R H D++ +SW G + R
Sbjct: 159 --KANRNNAGFSDQERGAFTRFLEAG-FVDSFR--HVYPDLEGAYSWWSYRAGARDRNIG 213
Query: 276 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
RIDYF+VSE LK++I + + GSDHCPV L
Sbjct: 214 WRIDYFVVSERLKEQIEDASISADVM------GSDHCPVEL 248
>gi|345881123|ref|ZP_08832651.1| exodeoxyribonuclease [Prevotella oulorum F0390]
gi|343920840|gb|EGV31568.1| exodeoxyribonuclease [Prevotella oulorum F0390]
Length = 250
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 87/282 (30%), Positives = 139/282 (49%), Gaps = 39/282 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+KF++WN N L V + F D D LQ + F YQ +W+ A
Sbjct: 1 MKFISWNVNGLRACVGKD---FEQQFKALDADFFCLQETKMQAGQLDLQFPGYQSFWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K+ P VS+ + +++ +GRVI E+E+F+L+ Y PN+ ++
Sbjct: 58 EKKGYSGTAIYAKQA--PLAVSYGIGID--EHDHEGRVITLEYESFFLVTVYTPNS--QD 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R +W+ Q ++ + KP+I CGD+NV+HEEID+ +P
Sbjct: 112 ELRRLDYRMQWEDDFQAYLHRLDEQKPVIVCGDMNVAHEEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
K + GFT ER + +L G ID +R L+ E+ +S WS + +
Sbjct: 158 -KTNRRNAGFTDEERAKMTQLLGHG-FIDTFRTLYPEQQT---YSWWSYRFRAREKNTGW 212
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF++SE L+ ++ ++ GSDHCPV ++L
Sbjct: 213 RIDYFLISERLRPQLTDAKIH------TDIMGSDHCPVEVDL 248
>gi|420451071|ref|ZP_14949925.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-45]
gi|393065003|gb|EJB65833.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-45]
Length = 250
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 86/281 (30%), Positives = 139/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + + DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVNADVFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGINME--EHDKEGRVVTCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFKKFLKTLELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER++F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEEREKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKDIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|385226164|ref|YP_005786089.1| exodeoxyribonuclease III [Helicobacter pylori 83]
gi|332674310|gb|AEE71127.1| exodeoxyribonuclease III [Helicobacter pylori 83]
Length = 250
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 86/281 (30%), Positives = 138/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQQDQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ + +++ +GR++ EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGINME--EHDKEGRMVTCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER +F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEERGKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKNIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|19703399|ref|NP_602961.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp. nucleatum
ATCC 25586]
gi|296328758|ref|ZP_06871272.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp. nucleatum
ATCC 23726]
gi|19713467|gb|AAL94260.1| Exodeoxyribonuclease III [Fusobacterium nucleatum subsp. nucleatum
ATCC 25586]
gi|296154093|gb|EFG94897.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp. nucleatum
ATCC 23726]
Length = 253
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 90/287 (31%), Positives = 143/287 (49%), Gaps = 48/287 (16%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N + +K F ++ + D+ LQ L K Y +W+ A
Sbjct: 1 MKLISWNVNGIRAAIKKG---FLDYFNEQNADIFCLQETKLSAGQLDLELKGYHQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K+ +P VS+ L +++ +GRVI EFE FY++ Y PN+ K+
Sbjct: 58 EKKGYSGTAIFTKQ--EPLSVSYGL--GIEEHDKEGRVITLEFEKFYMVTVYTPNS--KD 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R W+ ++++ K P++ CGDLNV+H+EID+ +P
Sbjct: 112 ELLRLDYRMVWEDEFRKYLKNLEKKKPVVVCGDLNVAHKEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
K + GFT ER +F +L G ID +R+ + +++ +SW YRG+
Sbjct: 158 -KTNRRNAGFTDEERGKFTELLDSG-FIDTFRYFY--PNLEQVYSW-----WSYRGRARE 208
Query: 277 -----RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF+VS+ L+ ++ E+ IE GSDHCPV L L
Sbjct: 209 NNAGWRIDYFVVSKGLEKSLVDAEIHSQ-IE-----GSDHCPVVLFL 249
>gi|169829765|ref|YP_001699923.1| exodeoxyribonuclease [Lysinibacillus sphaericus C3-41]
gi|168994253|gb|ACA41793.1| Exodeoxyribonuclease [Lysinibacillus sphaericus C3-41]
Length = 251
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 87/284 (30%), Positives = 138/284 (48%), Gaps = 42/284 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+KF++WN N + + F +F + D +Q Y+ +W+ A
Sbjct: 1 MKFISWNVNGIRACLGKG---FLDFFHQIEADFFCIQETKCQAGQVELALDGYEQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ K P V + + + +GR+I E+E FYL+N Y PN +
Sbjct: 58 QKKGYSGTAIFTKHT--PLSVKYGVGDE--DSQDEGRIITLEYEDFYLVNVYTPNA--QR 111
Query: 159 EENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W++ + ++ S KP+++CGDLNV+H EID+ +
Sbjct: 112 DLARLPLRLTWEEHLASYLQDLNSKKPVVYCGDLNVAHTEIDLKNA-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLH-KEKDMDCGFSWSGNPIGKYRGKRM 276
K + G GFT ER +F +L G +D++R+ H E D F+W + + K R + +
Sbjct: 158 -KSNIGNSGFTYEERAKFSELLASG-FVDSFRYKHPNETDH---FTW-WSYMNKVRERNI 211
Query: 277 --RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYFIVSE+LK++I + H GSDHCP+ L+L
Sbjct: 212 GWRIDYFIVSEQLKNQINQATIHPH------IMGSDHCPIELQL 249
>gi|440801517|gb|ELR22535.1| exodeoxyribonuclease III, putative [Acanthamoeba castellanii str.
Neff]
Length = 317
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 90/288 (31%), Positives = 142/288 (49%), Gaps = 40/288 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ----ILMRALSSPPFKNY-QIWW 96
+K ++WN N L K ++ DPDVI Q A++ +Y +W
Sbjct: 61 MKLISWNLNGLNAVHKKG--HLVKYVRDEDPDVICFQETKTQTSTAIAQLLGNDYPHEYW 118
Query: 97 SLADSK--YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNN 154
+ + +K YAGTA K +P V++ + +++ +GRVI EF+ FYL+NTY PN
Sbjct: 119 NHSVNKLGYAGTATFSK--VKPVSVTYGI--GIAEHDGEGRVITTEFDRFYLVNTYIPNA 174
Query: 155 GWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNG 213
G K E + R++W+K ++ KP++WCGDLNV+H +ID+++P
Sbjct: 175 GQKLERLGY--RQEWNKDFLAYLKNLEQTKPVVWCGDLNVAHHDIDIANP---------- 222
Query: 214 YVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRG 273
K + GFT ER+ FG +L+ G +D +R H+ D+ WS + +
Sbjct: 223 -----KTNQKTAGFTKEERRDFGQLLESG-FVDTFR--HQNPDLQQFTYWSNRFNCRAKN 274
Query: 274 KRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEA 321
R+DYF+VS KD + C+ GSDHCP+ L + +A
Sbjct: 275 LGWRLDYFVVS---KDFLPECDKS---FVRPNALGSDHCPIGLLVRKA 316
>gi|150402181|ref|YP_001329475.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis C7]
gi|150033211|gb|ABR65324.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis C7]
Length = 249
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 89/283 (31%), Positives = 139/283 (49%), Gaps = 45/283 (15%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N + +KN F +F+ PD++ +Q + Y +W+ A
Sbjct: 1 MKMISWNVNGIRACLKNG---FMDFLERESPDIMCIQETKVQSGQVQLGLDGYFQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K +P V ++ T +++ +GRV+ EF+ +YL+N Y PN+ +
Sbjct: 58 EKKGYSGTAIFTK--IKPNNVILGIKNT--EHDGEGRVLTLEFDKYYLINVYTPNS--QR 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R+KWD+ ++ KP+I+CGDLNV+H+EID+ +P
Sbjct: 112 GLTRLEYRQKWDQDFLNYIKTLENEKPVIFCGDLNVAHKEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GFT ER F I+ G ID +R +KE D +S+ N K G R
Sbjct: 158 -KNNVKNAGFTPEERIGFDNIVDSG-FIDTFREFNKEPDNYSWWSYRFNARSKNIG--WR 213
Query: 278 IDYFIVS----EELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
IDYF +S + LKD I E+ GSDHCPV +
Sbjct: 214 IDYFCISKILRDNLKDAFIMSEVM----------GSDHCPVGI 246
>gi|226228755|ref|YP_002762861.1| exodeoxyribonuclease III [Gemmatimonas aurantiaca T-27]
gi|226091946|dbj|BAH40391.1| exodeoxyribonuclease III [Gemmatimonas aurantiaca T-27]
Length = 265
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 97/298 (32%), Positives = 141/298 (47%), Gaps = 54/298 (18%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILM--RALSSPPFKNYQIWWSLA 99
+K +WN N L +K F FI T PDV+ LQ R Y +W+ A
Sbjct: 1 MKIYSWNVNGLRAVLKKGL--FMPFIETHQPDVLCLQETKSEREQVEIDLAGYHEYWNSA 58
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEK-TALKY----------EPDGRVILAEFETFYLL 147
+K Y+GTA+ + +P V+ K A KY E +GRVI AEFE F+++
Sbjct: 59 TTKGYSGTAIFSRT--EPLSVTNGFAKAVAKKYTLVDDAGRDSETEGRVITAEFEKFFVV 116
Query: 148 NTYAPNNGWKEEENSF-QRRRKWDKRIQEFVLQCSG----KPLIWCGDLNVSHEEIDVSH 202
Y PN K++ + R + WD F+ C KP+++CGDLNV+H E+D+++
Sbjct: 117 TVYTPNA--KDDLSRLPLRSQHWDA---AFLAHCKALEMKKPVVFCGDLNVAHTELDLAN 171
Query: 203 PEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS 262
P+ PN+ G+ GFT ER+ F + L G +D R H+ + +S
Sbjct: 172 PK------------PNR---GRKGFTDEERQGFQSFLDAG-FVDTLRMFHQG---NGHYS 212
Query: 263 -WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
WS + R RIDY +VS L+ + E+ GSDHCPVS+ LS
Sbjct: 213 WWSHFANSRARNVGWRIDYVLVSAALQKSVATAEIHA------DVMGSDHCPVSVTLS 264
>gi|260495692|ref|ZP_05815815.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_33]
gi|260196757|gb|EEW94281.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_33]
Length = 253
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 90/288 (31%), Positives = 144/288 (50%), Gaps = 48/288 (16%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N + +K F ++ + D+ LQ L K Y +W+ A
Sbjct: 1 MKLISWNVNGIRAAIKKG---FLDYFNEQNADIFCLQETKLSAGQLDLELKGYHQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K+ +P VS+ L +++ +GRVI EFE FY++ Y PN+ K+
Sbjct: 58 EKKGYSGTAIFTKQ--EPLSVSYGL--GIEEHDKEGRVITLEFEKFYMVTVYTPNS--KD 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R W+ ++++ K P++ CGDLNV+H+EID+ +P
Sbjct: 112 ELLRLDYRMVWEDEFRKYLKNLEKKKPVVACGDLNVAHKEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
K + GFT ER +F +L G ID +R+ + +++ +SW YRG+
Sbjct: 158 -KTNRRNAGFTDEERGKFTELLDSG-FIDTFRYFY--PNLEQVYSW-----WSYRGRARE 208
Query: 277 -----RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
RIDYF+VS+ L+ ++ E+ IE GSDHCPV L L+
Sbjct: 209 NNAGWRIDYFVVSKGLEKNLVDAEIHTQ-IE-----GSDHCPVVLFLN 250
>gi|381180194|ref|ZP_09889037.1| exodeoxyribonuclease III Xth [Treponema saccharophilum DSM 2985]
gi|380767904|gb|EIC01900.1| exodeoxyribonuclease III Xth [Treponema saccharophilum DSM 2985]
Length = 253
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 93/283 (32%), Positives = 139/283 (49%), Gaps = 42/283 (14%)
Query: 43 KFVTWNANSLLLRVKNNWPEF-----SNFITTFDPDVIALQILMRALSSPPFKNYQIWWS 97
KF++WN N L + N+ E ++F + + A QI M P +K Y W+
Sbjct: 4 KFISWNVNGLRAVMGKNFMEAFDSLGADFFCLQETKLQAGQIEM---DLPGYKEY---WN 57
Query: 98 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 156
A K Y+GTA+ K +P VS+ + +++ +GRVI E+ F+L+ Y PN+
Sbjct: 58 YAQKKGYSGTAIFTKH--EPLSVSYGI--GIEQHDTEGRVITLEYADFFLVTVYTPNS-- 111
Query: 157 KEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 215
+ E R W+ + F++ K P+I CGD+NV+HEEID+ +P +A + N
Sbjct: 112 QNELKRLDYRMAWEDDFRNFLVSLKAKKPVIVCGDMNVAHEEIDIKNP---SANRRNA-- 166
Query: 216 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 275
GFT ER + +L G ID +R L+ E D WS + R
Sbjct: 167 ----------GFTDEERAKMTELLASG-FIDTFRTLNPELK-DAYSWWSYRFHARERNAG 214
Query: 276 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF+VS+++K RI ++ GSDHCPV LEL
Sbjct: 215 WRIDYFLVSDDIKPRISDAKIHA------DILGSDHCPVELEL 251
>gi|328782712|ref|XP_623551.2| PREDICTED: recombination repair protein 1 [Apis mellifera]
Length = 346
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 88/284 (30%), Positives = 139/284 (48%), Gaps = 38/284 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPP----FKNYQIWW- 96
LK +WN + + +K N ++ I D D++ALQ + P Y ++
Sbjct: 94 LKISSWNVSGIRAVIKKNGIKY---IAKEDADIVALQETKCDSNKLPEEIKLNGYHYYFL 150
Query: 97 SLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 156
S Y G AL K+ +P V + L + +++ +GR+I AE+ FYL+N Y PN G
Sbjct: 151 ESKKSGYCGVALFTKE--KPIDVKYGLNNS--EFDNEGRLITAEYLNFYLINVYVPNAGQ 206
Query: 157 KEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 215
K + +R KW++ + +V KP+I CGD+NV+H+EID+ +P
Sbjct: 207 KLV--TLPKRLKWNEIFKTYVRNLDEKKPVIICGDMNVAHKEIDLRNP------------ 252
Query: 216 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 275
K + GFTI ER L G +D +R L+ +K D WS + +
Sbjct: 253 ---KTNIKNAGFTIEERDGMTDFLATG-FVDTFRALYPDK-TDAYTFWSYFANARSKNIG 307
Query: 276 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
R+DYF+VSE +KD + C+ + + YGSDHCP+ L ++
Sbjct: 308 WRLDYFLVSERIKDNV--CD----NVIRDKVYGSDHCPIVLYIN 345
>gi|110801105|ref|YP_695823.1| exodeoxyribonuclease III [Clostridium perfringens ATCC 13124]
gi|110675752|gb|ABG84739.1| exodeoxyribonuclease III [Clostridium perfringens ATCC 13124]
Length = 250
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 87/280 (31%), Positives = 138/280 (49%), Gaps = 38/280 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L VK F ++ + D D+ LQ L + Y +W+ A
Sbjct: 1 MKLISWNVNGLRACVKKG---FLDYFKSEDADIFCLQETKLQEGQIDLDLEGYFQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ KK +P V + + ++ +GRVI EFE +++ Y PN+ +
Sbjct: 58 EKKGYSGTAIFTKK--EPLNVYYGINME--HHDKEGRVITLEFEDLFMVTVYTPNS--QS 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSGKP-LIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E + R +W+ + ++L+ S K ++ CGDLNV+H+EID+ +P
Sbjct: 112 ELARLEYRMEWEDDFRNYLLELSSKKGVVVCGDLNVAHKEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
K + GFT ER +F +L G ID +R+ + D++ +S WS +
Sbjct: 158 -KTNRKNAGFTDEERDKFSTLLSSG-FIDTFRYFN--PDLEGVYSWWSYRFNARKNNAGW 213
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
RIDYF+VS L+DRI + + GSDHCPV L
Sbjct: 214 RIDYFLVSNNLEDRIKEASIDTEIL------GSDHCPVKL 247
>gi|254302413|ref|ZP_04969771.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
gi|148322605|gb|EDK87855.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
Length = 253
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 90/287 (31%), Positives = 143/287 (49%), Gaps = 48/287 (16%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N + +K F ++ + D+ LQ L K Y +W+ A
Sbjct: 1 MKLISWNVNGIRAAIKKG---FLDYFNEQNADIFCLQETKLSAGQLDLELKGYHQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K+ +P VS+ L +++ +GRVI EFE FY++ Y PN+ K+
Sbjct: 58 EKKGYSGTAIFTKQ--EPLSVSYGL--GIEEHDKEGRVITLEFEKFYMVTVYTPNS--KD 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R W+ ++++ K P++ CGDLNV+H+EID+ +P
Sbjct: 112 ELLRLDYRMVWEDEFRKYLKNLEKKKPVVVCGDLNVAHKEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
K + GFT ER +F +L G ID +R+ + +++ +SW YRG+
Sbjct: 158 -KTNRRNAGFTDEERGKFTELLDSG-FIDTFRYFY--PNLEQVYSW-----WSYRGRARE 208
Query: 277 -----RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF+VS+ L+ ++ E+ IE GSDHCPV L L
Sbjct: 209 NNAGWRIDYFVVSKGLEKNLVDAEIHSQ-IE-----GSDHCPVVLFL 249
>gi|340354875|ref|ZP_08677571.1| exodeoxyribonuclease III [Sporosarcina newyorkensis 2681]
gi|339622889|gb|EGQ27400.1| exodeoxyribonuclease III [Sporosarcina newyorkensis 2681]
Length = 238
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 81/263 (30%), Positives = 129/263 (49%), Gaps = 33/263 (12%)
Query: 63 FSNFITTFDPDVIALQIL--MRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKV 119
F++F D+ +Q + PF Y+ +W+ A+ K Y+GTA+ K+ +P V
Sbjct: 5 FNDFFEQMQADIFCVQEIKCQEGQIELPFDGYEHYWNYAEKKGYSGTAVFTKQ--RPLSV 62
Query: 120 SFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ 179
+ L E +GRV+ EFE F+L+N Y PN+ + + R KW+ + + +
Sbjct: 63 QYGL--NGQDSEAEGRVLTLEFEKFFLVNCYTPNS--QRDLARLSYRLKWEDEMLAHLTE 118
Query: 180 CSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAI 238
KP+I+CGDLNV+HEEID+ + K ++G GFT ER + +
Sbjct: 119 LDAQKPVIYCGDLNVAHEEIDICNV---------------KSNYGNSGFTKEERAKMTRL 163
Query: 239 LKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQG 298
L G ID +R+LH ++ + WS + R RIDY ++S L+ + E+
Sbjct: 164 LDSG-FIDTFRYLHPNQEGAYTW-WSYMRDVRARNIGWRIDYLLISNRLQSTLQTSEIHA 221
Query: 299 HGIELEGFYGSDHCPVSLELSEA 321
+ GSDHCP+S E + A
Sbjct: 222 EIL------GSDHCPISAEFAFA 238
>gi|336401875|ref|ZP_08582631.1| exodeoxyribonuclease [Fusobacterium sp. 21_1A]
gi|336160344|gb|EGN63396.1| exodeoxyribonuclease [Fusobacterium sp. 21_1A]
Length = 253
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 90/288 (31%), Positives = 144/288 (50%), Gaps = 48/288 (16%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N + +K F ++ + D+ LQ L K Y +W+ A
Sbjct: 1 MKLISWNVNGIRAAIKKG---FLDYFNEQNADIFCLQETKLSAGQLDLELKGYHQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K+ +P VS+ L +++ +GRVI EFE FY++ Y PN+ K+
Sbjct: 58 EKKGYSGTAIFTKQ--EPLSVSYGL--GIEEHDKEGRVITLEFEKFYMVTVYTPNS--KD 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R W+ ++++ K P++ CGDLNV+H+EID+ +P
Sbjct: 112 ELLRLDYRMVWEDEFRKYLKNLEKKKPVVVCGDLNVAHKEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
K + GFT ER +F +L G ID +R+ + +++ +SW YRG+
Sbjct: 158 -KTNRRNAGFTDEERGKFTELLDSG-FIDTFRYFY--PNLEQVYSWWS-----YRGRARE 208
Query: 277 -----RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
RIDYF+VS+ L+ ++ E+ IE GSDHCPV L L+
Sbjct: 209 NNAGWRIDYFVVSKGLEKNLVDAEIHTQ-IE-----GSDHCPVVLFLN 250
>gi|421712646|ref|ZP_16151978.1| exodeoxyribonuclease III [Helicobacter pylori R32b]
gi|407217447|gb|EKE87280.1| exodeoxyribonuclease III [Helicobacter pylori R32b]
Length = 250
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 137/281 (48%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D DV +Q + + ++ F Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQQEQNTFEFNGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ + +++ +GRVI EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGI--NIEEHDKEGRVITCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER +F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEERGKFSELLNTG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKNIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|421526611|ref|ZP_15973218.1| exodeoxyribonuclease III [Fusobacterium nucleatum ChDC F128]
gi|402257168|gb|EJU07643.1| exodeoxyribonuclease III [Fusobacterium nucleatum ChDC F128]
Length = 253
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 87/282 (30%), Positives = 135/282 (47%), Gaps = 38/282 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N + +K F ++ + D+ LQ L K Y +W+ A
Sbjct: 1 MKLISWNVNGIRAAIKKG---FLDYFNEQNADIFCLQETKLSEGQLDLDLKGYHQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K+ +P VS+ L +++ +GRVI EFE FY++ Y PN+ K+
Sbjct: 58 EKKGYSGTAIFTKE--EPLSVSYGL--GIEEHDKEGRVITLEFEKFYMITVYTPNS--KD 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R W+ ++++ K P++ CGDLNV+H+EID+ +P
Sbjct: 112 ELQRLDYRMVWEDEFRKYLKNLEKKKPVVVCGDLNVAHKEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
K + GFT ER +F +L G D +R H D++ +S WS +
Sbjct: 158 -KTNRRNAGFTDEERGKFTELLAAG-FTDTFR--HFYPDLEHAYSWWSYRANARKNNTGW 213
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF+VS L ++ E+ GSDHCPV L L
Sbjct: 214 RIDYFVVSNALDKYLVDAEIHAQT------EGSDHCPVVLFL 249
>gi|352683918|ref|YP_004895902.1| exodeoxyribonuclease III [Acidaminococcus intestini RyC-MR95]
gi|350278572|gb|AEQ21762.1| exodeoxyribonuclease III [Acidaminococcus intestini RyC-MR95]
Length = 258
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 88/283 (31%), Positives = 140/283 (49%), Gaps = 36/283 (12%)
Query: 39 KDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWW 96
++ +K VTWN N L + F + D D+I++Q + R +S F Y +W
Sbjct: 5 RNLMKLVTWNVNGLRACMNKG---FKESMEKLDADIISIQETKMQREQASFDFPGYYEYW 61
Query: 97 SLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNG 155
+ A K Y+GTA+ + +P V++ L +++ +GRVI AE++ FYL+N Y PN+
Sbjct: 62 NSAVKKGYSGTAIFSR--IKPLSVTYGL--GIEEHDQEGRVITAEYDDFYLVNVYTPNS- 116
Query: 156 WKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY 214
+ E R W+ Q + S K I CGD+NV+HE ID+ +P+
Sbjct: 117 -QRELARLSYRMAWEDAFQAYCEDLSKKKTTIVCGDMNVAHEPIDLKNPD---------- 165
Query: 215 VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGK 274
+ GF+ ER++ A L G +D++R L+ +++ + WS + R
Sbjct: 166 -----SNHHNAGFSDEERQKLDAFLARG-FVDSFRMLYPDREGAYTW-WSYMFKARERNA 218
Query: 275 RMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLE 317
RIDYF+VSE +D+I + + GSDHCPV LE
Sbjct: 219 GWRIDYFLVSEAGRDKIRDVTI------MNEIMGSDHCPVVLE 255
>gi|422932904|ref|ZP_16965829.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp. animalis
ATCC 51191]
gi|339891952|gb|EGQ80860.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp. animalis
ATCC 51191]
Length = 253
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 90/288 (31%), Positives = 144/288 (50%), Gaps = 48/288 (16%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N + +K F ++ + D+ LQ L K Y +W+ A
Sbjct: 1 MKLISWNVNGIRAAIKKG---FLDYFNEQNADIFCLQETKLSAGQLDLELKGYHQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K+ +P VS+ L +++ +GRVI EFE FY++ Y PN+ K+
Sbjct: 58 EKKGYSGTAIFTKQ--EPLSVSYGL--GIEEHDKEGRVITLEFEKFYMVTVYTPNS--KD 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R W+ ++++ K P++ CGDLNV+H+EID+ +P
Sbjct: 112 ELLRLDYRMVWEDEFRKYLKNLEKKKPVVVCGDLNVAHKEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
K + GFT ER +F +L G ID +R+ + +++ +SW YRG+
Sbjct: 158 -KTNRRNAGFTDEERGKFTELLDSG-FIDTFRYFY--PNLEQVYSWWS-----YRGRARE 208
Query: 277 -----RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
RIDYF+VS+ L+ ++ E+ IE GSDHCPV L L+
Sbjct: 209 NNTGWRIDYFVVSKGLEKNLVDAEIHTQ-IE-----GSDHCPVVLFLN 250
>gi|449096551|ref|YP_007429042.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis XF-1]
gi|449030466|gb|AGE65705.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis XF-1]
Length = 252
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 144/281 (51%), Gaps = 39/281 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ---ILMRALSSPPFKNYQIWWSL 98
+K ++WN N L R +F +++ D D+I LQ I + P + Y ++W+
Sbjct: 1 MKLISWNVNGL--RAVMRKMDFLSYLKEEDADIICLQETKIQDGQVDLQP-EGYHVYWNY 57
Query: 99 ADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWK 157
A K Y+GTA+ K+ +P +V + + +++ +GRVI EFE +++ Y PN+
Sbjct: 58 ALKKGYSGTAVFSKQ--EPLQVIYGI--GVEEHDQEGRVITLEFENVFVMTVYTPNSRRG 113
Query: 158 EEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVP 216
E + R +W++ + ++L+ K P+I CGDLNV+H+EID+ +P
Sbjct: 114 LERIDY--RMQWEEALLSYILELDQKKPVILCGDLNVAHQEIDLKNP------------- 158
Query: 217 PNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG-KYRGKR 275
K + GF+ ER F L+ G +D++R H D++ +SW G + R
Sbjct: 159 --KANRNNAGFSDQERGAFTRFLEAG-FVDSFR--HVYPDLEGAYSWWSYRAGARDRNIG 213
Query: 276 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
RIDYF+VSE LK++I + + GSDHCPV L
Sbjct: 214 WRIDYFVVSESLKEQIEDASISADVM------GSDHCPVEL 248
>gi|160936797|ref|ZP_02084163.1| hypothetical protein CLOBOL_01687 [Clostridium bolteae ATCC
BAA-613]
gi|158440289|gb|EDP18035.1| hypothetical protein CLOBOL_01687 [Clostridium bolteae ATCC
BAA-613]
Length = 251
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 86/281 (30%), Positives = 138/281 (49%), Gaps = 38/281 (13%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLAD 100
K ++WN N L V F +F + DV +Q L Y +W+ A
Sbjct: 3 KLISWNVNGLRACVGKG---FLDFFREAEADVFCIQESKLQEGQIELDLPGYHQYWNYAR 59
Query: 101 SK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEE 159
K Y+GTA+ K+ +P VS+ + +++ +GRVI AEF +Y++ Y PN+ ++
Sbjct: 60 KKGYSGTAMFTKE--EPVSVSYGIGME--EHDTEGRVITAEFPEYYVVTCYTPNS--QDG 113
Query: 160 ENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPN 218
R KW+ ++ + KP+++CGDLNV+H+EID+ +P
Sbjct: 114 LARLDYRMKWEDDFLAYLKKLEENKPVVFCGDLNVAHKEIDLKNP--------------- 158
Query: 219 KEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMR 277
K + GFT ER +F +L G +D +R+ + D++ +S WS + + R
Sbjct: 159 KTNRKNAGFTDEERGKFTDLLAAG-FVDTFRYFY--PDLEGTYSWWSYRFSARAKNAGWR 215
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF VSE LKDR+++ + + GSDHCPV L +
Sbjct: 216 IDYFCVSESLKDRLVSASIHNTVM------GSDHCPVELVI 250
>gi|188588613|ref|YP_001921245.1| exodeoxyribonuclease III [Clostridium botulinum E3 str. Alaska E43]
gi|188498894|gb|ACD52030.1| exodeoxyribonuclease III [Clostridium botulinum E3 str. Alaska E43]
Length = 251
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 86/278 (30%), Positives = 142/278 (51%), Gaps = 36/278 (12%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLAD 100
K ++WN N L VK F + + + D+ +Q L + Y +W+ A+
Sbjct: 3 KLISWNVNGLRACVKKG---FLDILKESNADIFCIQESKLQEGQIDLNLEEYYDYWNYAE 59
Query: 101 SK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEE 159
K Y+GTA+ K+ K ++ SL +++ +GRV+ EFE FYL+N Y PN+ +++
Sbjct: 60 KKGYSGTAVFSKE----KPLNISLGIGIEEHDKEGRVLTLEFEEFYLVNVYTPNS--QQK 113
Query: 160 ENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPN 218
R W+ ++++ + + K +I CGDLNV+H+EID+ +P
Sbjct: 114 LARIDYRMAWENDFRDYLNELNKDKSVIVCGDLNVAHKEIDLKNP--------------- 158
Query: 219 KEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRI 278
K + GF+ ER++F +LK G ID YR+ + +K+ + WS + RI
Sbjct: 159 KNNRNNAGFSDEEREKFDELLKSG-FIDTYRYFYPDKEGAYSW-WSYRFNARANNAGWRI 216
Query: 279 DYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
DYF+VS++ +DR++ + IE GSDHCPV L
Sbjct: 217 DYFLVSKDFEDRLVDANIHTQ-IE-----GSDHCPVEL 248
>gi|251779069|ref|ZP_04821989.1| exodeoxyribonuclease III [Clostridium botulinum E1 str. 'BoNT E
Beluga']
gi|243083384|gb|EES49274.1| exodeoxyribonuclease III [Clostridium botulinum E1 str. 'BoNT E
Beluga']
Length = 251
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 87/278 (31%), Positives = 140/278 (50%), Gaps = 36/278 (12%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLAD 100
K ++WN N L VK F + + + D+ +Q L Y +W+ A+
Sbjct: 3 KLISWNVNGLRACVKKG---FLDILKESNADIFCVQESKLQEGQIDLNLDGYYDYWNYAE 59
Query: 101 SK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEE 159
K Y+GTA+ K+ K ++ SL +++ +GRV+ EFE FYL+N Y PN+ +++
Sbjct: 60 KKGYSGTAVFSKE----KPLNISLGIGIEEHDKEGRVLTLEFEEFYLVNVYTPNS--QQK 113
Query: 160 ENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPN 218
R W+ + ++ + + K +I CGDLNV+H+EID+ +P
Sbjct: 114 LARIDYRMAWENDFRHYLNELNKDKSVIVCGDLNVAHKEIDLKNP--------------- 158
Query: 219 KEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRI 278
K + GF+ ER++FG +LK G ID YR+ + K+ + WS + RI
Sbjct: 159 KNNRNNAGFSDEEREKFGELLKSG-FIDTYRYFYPGKEGAYSW-WSYRFNARANNAGWRI 216
Query: 279 DYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
DYF+VS++ +DR++ + IE GSDHCPV L
Sbjct: 217 DYFLVSKDFEDRLVDANIHTQ-IE-----GSDHCPVEL 248
>gi|220930682|ref|YP_002507591.1| exodeoxyribonuclease III Xth [Clostridium cellulolyticum H10]
gi|220001010|gb|ACL77611.1| exodeoxyribonuclease III Xth [Clostridium cellulolyticum H10]
Length = 253
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 91/282 (32%), Positives = 139/282 (49%), Gaps = 38/282 (13%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILM----RALSSPPFKNYQIWWSL 98
K V+WN N L + F +F D D+ +Q + + Y+ +W+
Sbjct: 3 KLVSWNVNGLRACIGKG---FWDFFKEVDSDIFCIQETKLQEGQVELEQELEGYEQYWNY 59
Query: 99 ADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWK 157
A K Y+GTA+ K K VS S +++ +GRVI EF+ ++L+N Y PN+ K
Sbjct: 60 AVKKGYSGTAIFTK----IKPVSSSCGIGIEEHDNEGRVITLEFDQYFLVNVYTPNS--K 113
Query: 158 EEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVP 216
E + R KW+ + ++ Q KP+I CGD+NV+H+EID+ +P
Sbjct: 114 RELERLEYRMKWEDDFRIYLKQLEETKPVIICGDMNVAHKEIDIKNPR------------ 161
Query: 217 PNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM 276
NK GFT+ ER++F +L++G +D+YR L+ +K + WS + R
Sbjct: 162 SNKR---SAGFTMEEREKFSELLEQG-FVDSYRTLYPDKTGAYTW-WSYMFKARERNVGW 216
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF VSE LK+ I ++ GSDHCPV L +
Sbjct: 217 RIDYFCVSEVLKNIIEEADIYSE------IMGSDHCPVGLTI 252
>gi|420466271|ref|ZP_14965031.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-6]
gi|393078846|gb|EJB79584.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-6]
Length = 250
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 85/281 (30%), Positives = 139/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + + D+ +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVNADIFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGINME--EHDKEGRVVTCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER++F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEEREKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKDIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|384890060|ref|YP_005764362.1| exodeoxyribonuclease III [Helicobacter pylori v225d]
gi|297380626|gb|ADI35513.1| exodeoxyribonuclease III [Helicobacter pylori v225d]
Length = 250
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 86/281 (30%), Positives = 137/281 (48%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D D+ +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADIFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ + +++ +GRV+ EFE FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGINIE--EHDKEGRVVTCEFELFYLVNVYVPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER +F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEERGKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKNIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|295107237|emb|CBL04780.1| exodeoxyribonuclease III [Gordonibacter pamelaeae 7-10-1-b]
Length = 285
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 94/319 (29%), Positives = 143/319 (44%), Gaps = 78/319 (24%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
++F++WN N L K F + + D D++ALQ L ++ Y+ +WS A
Sbjct: 1 MRFISWNVNGLRAVQKKG---FEDIVCELDADIVALQETKLQEGQATLDLPQYREYWSYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K+ QP +V L L E GR++ EF F+ ++ Y PN +
Sbjct: 58 EKKGYSGTAVFTKE--QPLQVLHGLGSDYLDAE--GRIVALEFPQFWFVDVYTPNA--QN 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG------------------------------------ 182
E R +WD ++F C G
Sbjct: 112 ELARIAHRMEWDDAFRDF---CKGLEEGVLPADVPVQRPAPGEGHVCISELPLTQPGETA 168
Query: 183 --KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 240
KP++ CGD NV+H+EID+ +P PN+ G+ GF+ ER +F +L+
Sbjct: 169 APKPVVMCGDFNVAHQEIDLKNPG------------PNR---GKAGFSDEERGKFTDLLE 213
Query: 241 EGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGH 299
G +D +R LH D+ +S WS + RIDYF+VSE L ++ + +
Sbjct: 214 AG-FVDTFRRLH--PDVTGAYSWWSYRFKARQNNAGWRIDYFLVSESLAPKVASACI--- 267
Query: 300 GIELEGFYGSDHCPVSLEL 318
+ YGSDHCPV LEL
Sbjct: 268 ---YDEVYGSDHCPVGLEL 283
>gi|170051904|ref|XP_001861978.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167872934|gb|EDS36317.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 340
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 91/285 (31%), Positives = 138/285 (48%), Gaps = 40/285 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPP-----FKNYQIWW 96
+K +WN L V+ EF + PD++ LQ P K Y +W
Sbjct: 88 VKISSWNVAGLRSWVEKGCLEF---LEHEAPDILCLQETKCTEDQLPEEARHIKGYHPYW 144
Query: 97 SLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 156
YAG A+ KK P VS+ L + + DGR++ AE+E FYL+ Y PN G
Sbjct: 145 LCKPGGYAGVAIYSKK--MPFNVSYGLGDA--EQDEDGRLLTAEYEKFYLVCVYVPNAGR 200
Query: 157 KEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 215
K + +R +WD++ +++ K P+I CGD+NV+H EID+++P+
Sbjct: 201 KLV--TLPKRMRWDEKFLQYLRDLDAKKPVILCGDMNVAHAEIDLANPK----------- 247
Query: 216 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGF-SWSGNPIGKYRGK 274
NK++ GFT ER +L G +D +R + E+ F ++ GN K G
Sbjct: 248 -TNKKN---AGFTQEERDGMTNLLSHG-FVDTFRQRYPEQKAAYTFWTYMGNARAKNVG- 301
Query: 275 RMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
R+DYFI SE L R++ ++ G YGSDHCP++L L+
Sbjct: 302 -WRLDYFIASERLAGRVVDSVIR------PGVYGSDHCPITLLLN 339
>gi|289766441|ref|ZP_06525819.1| exodeoxyribonuclease III [Fusobacterium sp. D11]
gi|289717996|gb|EFD82008.1| exodeoxyribonuclease III [Fusobacterium sp. D11]
Length = 253
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 90/288 (31%), Positives = 144/288 (50%), Gaps = 48/288 (16%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N + +K F ++ + D+ LQ L K Y +W+ A
Sbjct: 1 MKLISWNVNGIRAAIKKG---FLDYFNEQNADIFCLQETKLSAGQLDLELKGYHQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K+ +P VS+ L +++ +GRVI EFE FY++ Y PN+ K+
Sbjct: 58 EKKGYSGTAIFTKQ--EPLSVSYGL--GIEEHDKEGRVITLEFEKFYMVTVYTPNS--KD 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R W+ ++++ K P++ CGDLNV+H+EID+ +P
Sbjct: 112 ELLRLDYRMIWEDEFRKYLKNLEKKKPVVVCGDLNVAHKEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
K + GFT ER +F +L G ID +R+ + +++ +SW YRG+
Sbjct: 158 -KTNRRNAGFTDEERGKFTELLDSG-FIDTFRYFY--PNLEQVYSWWS-----YRGRARE 208
Query: 277 -----RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
RIDYF+VS+ L+ ++ E+ IE GSDHCPV L L+
Sbjct: 209 NNAGWRIDYFVVSKGLEKNLVDAEIHTQ-IE-----GSDHCPVVLFLN 250
>gi|251794788|ref|YP_003009519.1| exodeoxyribonuclease III Xth [Paenibacillus sp. JDR-2]
gi|247542414|gb|ACS99432.1| exodeoxyribonuclease III Xth [Paenibacillus sp. JDR-2]
Length = 258
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 91/291 (31%), Positives = 143/291 (49%), Gaps = 42/291 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ---ILMRALSSPPFKNYQIWWSL 98
+KFV+WN N L V F ++ D D LQ + + + Y ++W
Sbjct: 1 MKFVSWNVNGLRASVNKG---FLDYFNEMDADFFCLQETKLQEGQIKLELGEAYHLFWHY 57
Query: 99 ADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWK 157
A+ K Y+GTA+ K +P +S+ L + + +GRVI E+E FYL+ Y PN +
Sbjct: 58 AEKKGYSGTAIFTKH--KPLSISYGLGEE--DEDTEGRVITLEYENFYLVTVYTPNA--R 111
Query: 158 EEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVP 216
+ + R W++ + ++++ KP+I CGDLNV+H++ID+ +
Sbjct: 112 RDLSRLDFRLAWEEMFRGYLIKLDEHKPVIVCGDLNVAHQDIDLKNA------------- 158
Query: 217 PNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM 276
K + G GFT ER++ +L G ID++R+L+ ++ D WS P + R
Sbjct: 159 --KSNRGNSGFTDEEREKMTRLLDAG-FIDSFRYLYPDR-TDAYTWWSFMPKIRERNVGW 214
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEASSDSEK 327
RIDYF+ S L I+ GI+ + GSDHCPV L L D+EK
Sbjct: 215 RIDYFLASARLAPAIVEA-----GIDSQ-ILGSDHCPVVLTL-----DTEK 254
>gi|340624333|ref|YP_004742786.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis X1]
gi|339904601|gb|AEK20043.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis X1]
Length = 249
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 90/283 (31%), Positives = 140/283 (49%), Gaps = 45/283 (15%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N + +KN F +F+ PD++ +Q + Y +W+ A
Sbjct: 1 MKMLSWNVNGIRACLKNG---FMDFLERESPDIMCIQETKVQSGQVQLGLDGYFQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K +P +VS+ + +++ +GRVI +F+ +YLLN Y PN+ +
Sbjct: 58 ERKGYSGTAIFTK--IKPNEVSYGIGNN--EHDGEGRVITLKFDEYYLLNVYTPNS--QR 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R+KWD+ +V K P+I+CGDLNV+H+EID+ +P
Sbjct: 112 GLTRLEYRQKWDQDFLNYVKTLENKKPVIFCGDLNVAHKEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GFT ER F I+ G +D +R +KE D +S+ N K G R
Sbjct: 158 -KTNVKNAGFTPEERNGFDNIVNSG-FLDTFREFNKEPDNYSWWSYRFNARAKNIG--WR 213
Query: 278 IDYFIVSE----ELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
IDYF +S+ LKD I E+ GSDHCPV +
Sbjct: 214 IDYFCISKSLKGNLKDAFIMPEVM----------GSDHCPVGI 246
>gi|307212268|gb|EFN88076.1| Recombination repair protein 1 [Harpegnathos saltator]
Length = 327
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 89/281 (31%), Positives = 137/281 (48%), Gaps = 38/281 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPP----FKNYQIWW- 96
LK TWN + + +K N ++ I D D+IALQ P Y ++
Sbjct: 75 LKICTWNVSGIRAVIKKNGLDY---IAKEDADIIALQETKCGKDKMPDEIKLSGYHHYFL 131
Query: 97 SLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 156
S Y G AL K+ +P V + L + ++ +GR+I AEF F+++N Y PN G
Sbjct: 132 DSKQSGYCGVALFCKE--KPVSVKYGLNNS--NFDSEGRIIAAEFPEFFMVNVYVPNAGQ 187
Query: 157 KEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 215
K + +R +W+K ++++ + KP+I CGD+NV+H+EID+ +P
Sbjct: 188 KLV--TLPKRLEWNKIFKKYIEELDQKKPVIICGDMNVAHQEIDLKNP------------ 233
Query: 216 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 275
K + GFT ER L G ID +R L+ +K+ F WS + +
Sbjct: 234 ---KTNTKNAGFTKEERDGMTDFLAAG-FIDTFRLLYPDKEGAYTF-WSYFANARNKDIG 288
Query: 276 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
R+DYF+ SE +K++I C+ I + YGSDHCPV L
Sbjct: 289 WRLDYFLASERIKNKI--CD----NIIRKQVYGSDHCPVIL 323
>gi|444374829|ref|ZP_21174132.1| exodeoxyribonuclease III [Helicobacter pylori A45]
gi|443620688|gb|ELT81131.1| exodeoxyribonuclease III [Helicobacter pylori A45]
Length = 250
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 138/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + + DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVNADVFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ + +++ +GRVI EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGI--NIEEHDKEGRVITCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER +F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEERGKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKDIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|300726843|ref|ZP_07060273.1| exodeoxyribonuclease III [Prevotella bryantii B14]
gi|299775956|gb|EFI72536.1| exodeoxyribonuclease III [Prevotella bryantii B14]
Length = 250
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 84/282 (29%), Positives = 138/282 (48%), Gaps = 39/282 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L V + E +FD D +Q + F Y+ +W+ A
Sbjct: 1 MKLISWNVNGLRACVTKGFKET---FKSFDADFFCIQETKMQEGQLDLQFDGYESFWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
D K Y+GTA+ K +P V++ ++ +E GRVI E++ F+L+ Y PN+ +
Sbjct: 58 DKKGYSGTAIYAKT--KPLNVTYGIDIDDHNHE--GRVITLEYDNFFLVTVYTPNS--QN 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R W+K Q ++ + KP+I CGD+NV+H+EID+ +P
Sbjct: 112 ELKRLNYRMIWEKDFQTYLHKLDKRKPIIVCGDMNVAHQEIDIKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
K + GFT ER++ +L G D +RF + E+ +S WS + +
Sbjct: 158 -KTNHKSAGFTDEEREKMTQLLSNG-FTDTFRFKYPEQ---ITYSWWSYRFRAREKNAGW 212
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF+VS+ +K++++ ++ GSDHCPV L +
Sbjct: 213 RIDYFLVSDRIKEKVLDAKIH------TDIMGSDHCPVELTI 248
>gi|383862977|ref|XP_003706959.1| PREDICTED: recombination repair protein 1-like [Megachile
rotundata]
Length = 336
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 88/283 (31%), Positives = 144/283 (50%), Gaps = 42/283 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPP----FKNYQIWWS 97
LK +WN + + +K + E+ I D D++ALQ + P K Y ++
Sbjct: 84 LKISSWNVSGIRALIKKSGMEY---IMKEDADIVALQETKCDKNKLPEEVKLKGYHHYF- 139
Query: 98 LADSK---YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNN 154
DSK Y G AL K+ +P + + L+ + +++ +GR+I AE+ FY LN Y PN
Sbjct: 140 -LDSKKAGYCGVALYTKQ--KPIDIQYGLKNS--EFDDEGRLITAEYPNFYFLNVYVPNA 194
Query: 155 GWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNG 213
G K + +R +W++ + +V Q KP+I CGD+NV+H+EID+++P
Sbjct: 195 GQKLV--TLPKRLQWNEAFKSYVKQLDEKKPVIICGDMNVAHQEIDLTNP---------- 242
Query: 214 YVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRG 273
K + GFT ER+ L G +D +R L+ +K F WS + +
Sbjct: 243 -----KTNTKNAGFTKEEREGMTDFLAAG-FVDTFRSLYPDKTGAYTF-WSYFANARSKN 295
Query: 274 KRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
R+DYF+VSE++K+++ C+ + + YGSDHCP+ L
Sbjct: 296 IGWRLDYFLVSEKIKNKV--CD----NVIRDKIYGSDHCPIVL 332
>gi|420407902|ref|ZP_14907061.1| exodeoxyribonuclease III [Helicobacter pylori NQ4216]
gi|393025387|gb|EJB26493.1| exodeoxyribonuclease III [Helicobacter pylori NQ4216]
Length = 250
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 139/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + + DV +Q + + + FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVNADVFCIQESKMQQEQNIFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ ++ +++ +GRVI EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGIDIK--EHDKEGRVITCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLNYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER++F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEEREKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKDIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|289450732|ref|YP_003475042.1| exodeoxyribonuclease III [Clostridiales genomosp. BVAB3 str.
UPII9-5]
gi|289185279|gb|ADC91704.1| exodeoxyribonuclease III [Clostridiales genomosp. BVAB3 str.
UPII9-5]
Length = 251
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 92/280 (32%), Positives = 138/280 (49%), Gaps = 36/280 (12%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLAD 100
K ++WN N L V+ + E ++ D+I +Q L Y +W+ A
Sbjct: 3 KLISWNVNGLRACVEKGFVESMQHLSA---DIICIQESKLQAGQIDLDLPGYCQYWNYAR 59
Query: 101 SK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEE 159
K Y+GTA+ K +P +V++ + ++ +GR+I AEF +YL Y PN+ ++
Sbjct: 60 KKGYSGTAIFSK--IEPLRVTYGMNMP--DHDQEGRLITAEFPDYYLCTVYTPNS--QDG 113
Query: 160 ENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPN 218
R+ W++ ++ + KP+I CGDLNV+H EID+ +P AA + N
Sbjct: 114 LKRLVYRQSWERDFLTYLQELRRVKPVIICGDLNVAHREIDLKNP---AANRKN------ 164
Query: 219 KEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRI 278
PGFT ER F +L G +D +R+ + EK + + WS + R RI
Sbjct: 165 ------PGFTDEERAEFQTLLDAG-FVDTFRYFYPEKPEEYSW-WSYRFNARSRNAGWRI 216
Query: 279 DYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
DYF+VS EL DR +Q I E F GSDHCPV L L
Sbjct: 217 DYFLVSNELTDR-----LQSASIHQEIF-GSDHCPVELIL 250
>gi|217031877|ref|ZP_03437380.1| hypothetical protein HPB128_199g85 [Helicobacter pylori B128]
gi|298735503|ref|YP_003728024.1| exodeoxyribonuclease III [Helicobacter pylori B8]
gi|216946529|gb|EEC25131.1| hypothetical protein HPB128_199g85 [Helicobacter pylori B128]
gi|298354688|emb|CBI65560.1| exodeoxyribonuclease III [Helicobacter pylori B8]
Length = 250
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 137/281 (48%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D DV +Q + + ++ F Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQQEQNTFEFNGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ + +++ +GRVI EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGI--NIEEHDKEGRVITCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER +F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEERGKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKDIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|346986376|ref|NP_001231340.1| DNA-(apurinic or apyrimidinic site) lyase [Cricetulus griseus]
gi|4106095|gb|AAD02702.1| apurinic/apyrimidinic endonuclease [Cricetulus griseus]
gi|344257035|gb|EGW13139.1| DNA-(apurinic or apyrimidinic site) lyase [Cricetulus griseus]
Length = 317
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 97/320 (30%), Positives = 160/320 (50%), Gaps = 45/320 (14%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
EKE + + P L D +T+ K LK +WN + L +K + +++
Sbjct: 33 EKEAAGEGPFLYEDAPDNKTSP-----GGKLATLKICSWNVDGLRAWIKK---KGLDWVK 84
Query: 69 TFDPDVIALQ-------ILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVS 120
PD++ LQ L L P +Q W + +D + Y+G LL ++C P KVS
Sbjct: 85 EEAPDILCLQETKCSENKLPAELQDLPGLTHQYWSAPSDKEGYSGVGLLSRQC--PLKVS 142
Query: 121 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ- 179
+ + + +++ +GRVI+AEF++F L+ Y PN G + R++WDK +F+
Sbjct: 143 YGIGEE--EHDQEGRVIVAEFDSFVLVTAYVPNAG--RGLVRLEYRQRWDKAFCKFLKDL 198
Query: 180 CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 239
S KPL+ CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L
Sbjct: 199 ASRKPLVLCGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELL 243
Query: 240 KEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGH 299
+ L D++R L+ F W+ + + R+DYF++S L + +++
Sbjct: 244 QAVPLTDSFRHLYPNTPYAYTF-WTYMMNARAKNVGWRLDYFLLSHSLLSSLCDSKIRSK 302
Query: 300 GIELEGFYGSDHCPVSLELS 319
+ GSDHCP++L L+
Sbjct: 303 AL------GSDHCPITLYLA 316
>gi|45361461|ref|NP_989307.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Xenopus
(Silurana) tropicalis]
gi|39794455|gb|AAH64266.1| hypothetical protein MGC76280 [Xenopus (Silurana) tropicalis]
gi|51703687|gb|AAH80950.1| hypothetical protein MGC76280 [Xenopus (Silurana) tropicalis]
gi|89267865|emb|CAJ83004.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Xenopus
(Silurana) tropicalis]
Length = 316
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 89/302 (29%), Positives = 154/302 (50%), Gaps = 41/302 (13%)
Query: 27 ETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRA--L 84
+ + + ++ KK LK +WN + + +K + N++ DP ++ LQ + A L
Sbjct: 46 DAPDNLTSDDGKKYTLKISSWNVDGIRAWIKK---QGLNWVREEDPHIMCLQEIKCAEKL 102
Query: 85 SSPPFKNY----QIWWSLADSK--YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVIL 138
P K+ +W+ D K Y+G A+L K +P V++ + +++ +GRVI
Sbjct: 103 LPPEIKDMPEYPHKYWACPDEKEGYSGVAMLCKD--KPLNVTYGI--GIEEHDKEGRVIT 158
Query: 139 AEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEE 197
AEF++F+L+ Y PN+ R++WD + ++ S KPLI CGDLNV+H+E
Sbjct: 159 AEFDSFFLIAAYVPNSS--RGLVRLDYRQRWDVDFRAYLKGLDSKKPLILCGDLNVAHQE 216
Query: 198 IDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDM 257
ID+ +P K + PGFT ER+ FG +L EG L D++R L+ +K
Sbjct: 217 IDLKNP---------------KTNKKTPGFTPQERQGFGELLAEGYL-DSFRELYPDKPS 260
Query: 258 DCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLE 317
F W+ + + R+DYF++S+ L+ + +++ GSDHCP++L
Sbjct: 261 AYTF-WTYMMNARAKNVGWRLDYFVLSKALRPALCDSKVRSK------IMGSDHCPITLL 313
Query: 318 LS 319
++
Sbjct: 314 MA 315
>gi|317501545|ref|ZP_07959741.1| exodeoxyribonuclease III Xth [Lachnospiraceae bacterium 8_1_57FAA]
gi|331088593|ref|ZP_08337504.1| exodeoxyribonuclease [Lachnospiraceae bacterium 3_1_46FAA]
gi|336440482|ref|ZP_08620069.1| exodeoxyribonuclease [Lachnospiraceae bacterium 1_1_57FAA]
gi|316897056|gb|EFV19131.1| exodeoxyribonuclease III Xth [Lachnospiraceae bacterium 8_1_57FAA]
gi|330407550|gb|EGG87050.1| exodeoxyribonuclease [Lachnospiraceae bacterium 3_1_46FAA]
gi|336012927|gb|EGN42818.1| exodeoxyribonuclease [Lachnospiraceae bacterium 1_1_57FAA]
Length = 250
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 85/281 (30%), Positives = 139/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+KFV+WN N + V+ F +F T D D+ +Q + Y +W+ A
Sbjct: 1 MKFVSWNVNGIRACVQKG---FLDFFTEADADIFCIQESKMQEGQLELDLPGYHQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ KK +P V++ + +++ +GRVI EFE FY + Y PN+ +
Sbjct: 58 VKKGYSGTAVFTKK--EPLSVTYGI--GIEEHDQEGRVITCEFEDFYFVTVYTPNS--QN 111
Query: 159 EENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R +W+ + ++ + KP+I GD+NV+H+EID+ +P
Sbjct: 112 ELARLDYRMRWEDDFRMYLKKLEEKKPVIVTGDMNVAHKEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GFT ER +F +L G ID +R+ + +++ + WS + + R
Sbjct: 158 -KTNRKNAGFTDEERGKFTELLDAG-FIDTFRYFYPDREGIYSW-WSYRFSARAKNAGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF VSE LK+R+ ++ L GSDHCP+ L++
Sbjct: 215 IDYFCVSESLKERLKDAKI------LTDVMGSDHCPIELDM 249
>gi|406882429|gb|EKD30227.1| hypothetical protein ACD_78C00115G0011 [uncultured bacterium (gcode
4)]
Length = 254
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 87/285 (30%), Positives = 141/285 (49%), Gaps = 40/285 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPFK------NYQIW 95
+KFV+WN N + + F ++ PDVI LQ + P YQ++
Sbjct: 1 MKFVSWNVNGVRSVLTKG---FLEYLEKESPDVIGLQEVKATEEQFPAGLDLQSLGYQVY 57
Query: 96 WSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNN 154
W+ A+ K Y+GTA+ K +P V + +++ +GR+I EFE ++ + Y PN
Sbjct: 58 WNAAERKGYSGTAVFSK--IKPLSVRYGY--GMAEHDTEGRIITLEFEEYFFVTVYTPNA 113
Query: 155 GWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNG 213
K E + R+ WD +++ + KP+I GDLNV+H++ID+S+P
Sbjct: 114 --KRELERLEYRQLWDSLFFDYLKRLEAEKPVIVSGDLNVAHKDIDLSNP---------- 161
Query: 214 YVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRG 273
K + G GFT ER FG L +G ID +R + K + + WS + R
Sbjct: 162 -----KANRGSAGFTDEERDGFGKFLSDG-FIDTFRHFYPNKTEEYTW-WSNFFHARDRN 214
Query: 274 KRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
R+DYF++SE L++R+ + ++ + GSDHCPV +E+
Sbjct: 215 IGWRLDYFLISEWLRERLKSAFIR------QEIRGSDHCPVGVEI 253
>gi|392960130|ref|ZP_10325603.1| exodeoxyribonuclease III Xth [Pelosinus fermentans DSM 17108]
gi|392455642|gb|EIW32426.1| exodeoxyribonuclease III Xth [Pelosinus fermentans DSM 17108]
Length = 250
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 85/281 (30%), Positives = 136/281 (48%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F T D D+ +Q + + Y+ +W+ A
Sbjct: 1 MKLISWNVNGLRACLSKG---FEDFFNTADADIFCIQETKMHPDQAEIGLIGYEKYWNSA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ + P V++ L +++ +GR+I EFE F+L+N Y PN+ K
Sbjct: 58 VKKGYSGTAVFTR--ITPLSVTYGLNIE--EHDQEGRIITLEFEDFFLVNVYTPNS--KR 111
Query: 159 EENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R +W+ + ++ KP+I CGD+NV+H+EID+ +P
Sbjct: 112 ELLRLDYRMRWEDEFRTYLTALDQSKPVIICGDINVAHQEIDIKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GFT ER + A+L+ G D +R ++ +K +D WS + R R
Sbjct: 158 -KTNRRNAGFTDEERDKMTALLEAG-FTDTFRHIYPDK-IDAYTWWSYMMNARARNIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+VS L+D I + GSDHCP+ LE+
Sbjct: 215 IDYFLVSNTLRDAIKEATI------YPDVMGSDHCPIGLEI 249
>gi|303234331|ref|ZP_07320970.1| exodeoxyribonuclease III [Finegoldia magna BVS033A4]
gi|302494447|gb|EFL54214.1| exodeoxyribonuclease III [Finegoldia magna BVS033A4]
Length = 253
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 86/284 (30%), Positives = 141/284 (49%), Gaps = 38/284 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ-ILMRALSSPPFKNYQIW----W 96
+K ++WN N +K F + + + D+ LQ I M+ N + + +
Sbjct: 1 MKLISWNVNGYRAVMKKG---FMDAFNSLNADIFCLQEIKMKENQMTDEMNIEGYHRYSY 57
Query: 97 SLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 156
S + Y+GT + K +P VSF + +++ +GRVI E+E F+L+N Y PN+
Sbjct: 58 SANKAGYSGTLVYTK--VEPIGVSFGIGID--EHDTEGRVITCEYEDFFLVNVYTPNSKQ 113
Query: 157 KEEENSFQRRRKWDKRIQEFV-LQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 215
K E + R W+ ++ + KP+I CGDLNV+H EID+ +P+
Sbjct: 114 KLERLDY--RMVWEDEFHNYLNILRDRKPVIVCGDLNVAHNEIDLKNPQ----------- 160
Query: 216 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 275
N+ GFT ER + +L +G ID +R+ + +K + + WS + R
Sbjct: 161 -SNRR---SAGFTDEERNKMSLLLNDG-YIDTFRYFYPDKTDEYSY-WSYFAKARERNAG 214
Query: 276 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
RIDYFIVS++LKD ++ ++ + GSDHCPV LE++
Sbjct: 215 WRIDYFIVSDDLKDNLVDAKIH------QSIMGSDHCPVELEIN 252
>gi|385249934|ref|YP_005778153.1| exodeoxyribonuclease [Helicobacter pylori F57]
gi|420402627|ref|ZP_14901815.1| exodeoxyribonuclease III [Helicobacter pylori CPY6081]
gi|317182729|dbj|BAJ60513.1| exodeoxyribonuclease [Helicobacter pylori F57]
gi|393016094|gb|EJB17254.1| exodeoxyribonuclease III [Helicobacter pylori CPY6081]
Length = 250
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 86/281 (30%), Positives = 137/281 (48%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGINME--EHDKEGRVVTCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER +F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEERGKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKNIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK + + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTHL------KDALIYKDILGSDHCPVGLEL 249
>gi|188585577|ref|YP_001917122.1| exodeoxyribonuclease III [Natranaerobius thermophilus JW/NM-WN-LF]
gi|179350264|gb|ACB84534.1| exodeoxyribonuclease III [Natranaerobius thermophilus JW/NM-WN-LF]
Length = 251
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 87/283 (30%), Positives = 143/283 (50%), Gaps = 38/283 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L +K + E+ N ++ D+ +Q L Y +W+ A
Sbjct: 1 MKLISWNVNGLRACLKKGFLEYFNEVS---GDIFCVQETKLQEGQIDLELPGYFQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K QP V + + + K++ +GRVI EF +YL+N Y PN+ +
Sbjct: 58 EKKGYSGTAIFTK--IQPLTVQYGIGEA--KHDKEGRVITLEFCDYYLVNVYTPNS--QR 111
Query: 159 EENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R +W+ + +++ S KP+I CGDLNV+H+EID+ +P+
Sbjct: 112 ELARLDYRLQWEDAFKNYLVNLDSEKPVIVCGDLNVAHKEIDLKNPK------------N 159
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
NK + GFT ER + +L G ID +R+ + D + ++ WS + R
Sbjct: 160 NKRN---AGFTEEERNKLTELLNAG-FIDTFRYFY--PDTEGAYTWWSYITKARERNAGW 213
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
RIDYF+ S++L + + E+ GSDHCPV+L+L+
Sbjct: 214 RIDYFLASQKLDNWLTDAEIHAD------IMGSDHCPVALKLA 250
>gi|153815015|ref|ZP_01967683.1| hypothetical protein RUMTOR_01232 [Ruminococcus torques ATCC 27756]
gi|145847583|gb|EDK24501.1| exodeoxyribonuclease III [Ruminococcus torques ATCC 27756]
Length = 252
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 85/281 (30%), Positives = 139/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+KFV+WN N + V+ F +F T D D+ +Q + Y +W+ A
Sbjct: 3 MKFVSWNVNGIRACVQKG---FLDFFTEADADIFCIQESKMQEGQLELDLPGYHQYWNYA 59
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ KK +P V++ + +++ +GRVI EFE FY + Y PN+ +
Sbjct: 60 VKKGYSGTAVFTKK--EPLSVTYGI--GIEEHDQEGRVITCEFEDFYFVTVYTPNS--QN 113
Query: 159 EENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R +W+ + ++ + KP+I GD+NV+H+EID+ +P
Sbjct: 114 ELARLDYRMRWEDDFRMYLKKLEEKKPVIVTGDMNVAHKEIDLKNP-------------- 159
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GFT ER +F +L G ID +R+ + +++ + WS + + R
Sbjct: 160 -KTNRKNAGFTDEERGKFTELLDAG-FIDTFRYFYPDREGIYSW-WSYRFSARAKNAGWR 216
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF VSE LK+R+ ++ L GSDHCP+ L++
Sbjct: 217 IDYFCVSESLKERLKDAKI------LTDVMGSDHCPIELDM 251
>gi|296330017|ref|ZP_06872501.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305676741|ref|YP_003868413.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
spizizenii str. W23]
gi|296153056|gb|EFG93921.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305414985|gb|ADM40104.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
spizizenii str. W23]
Length = 252
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 86/284 (30%), Positives = 145/284 (51%), Gaps = 39/284 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ---ILMRALSSPPFKNYQIWWSL 98
+K ++WN N L R +F +++ D D+I LQ I + P Y ++W+
Sbjct: 1 MKLISWNVNGL--RAVMRKMDFLSYLKEEDADIICLQETKIQDGQVDLQP-DGYHVYWNY 57
Query: 99 ADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWK 157
A K Y+GTA+ K+ +P +V + + +++ +GRVI EFE +++ Y PN+ K
Sbjct: 58 AVKKGYSGTAVFSKQ--EPLRVMYGI--GIEEHDQEGRVITLEFENLFVMTVYTPNS--K 111
Query: 158 EEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVP 216
R +W++ + ++L+ K P+I CGDLNV+H+EID+ +P
Sbjct: 112 RGLERIDYRMQWEEALLSYILELDKKKPVILCGDLNVAHQEIDLKNP------------- 158
Query: 217 PNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG-KYRGKR 275
K + GF+ ER F +L+ G +D++R H D++ +SW G + R
Sbjct: 159 --KANRNNAGFSDQERGAFTRLLEAG-FVDSFR--HVYPDLEGAYSWWSYRAGARDRNIG 213
Query: 276 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
R+DYF+VSE L+++I + + GSDHCPV L ++
Sbjct: 214 WRLDYFVVSERLEEQIEDASISADVM------GSDHCPVELMIN 251
>gi|227498619|ref|ZP_03928763.1| conserved hypothetical protein [Acidaminococcus sp. D21]
gi|226904075|gb|EEH89993.1| conserved hypothetical protein [Acidaminococcus sp. D21]
Length = 251
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 88/280 (31%), Positives = 138/280 (49%), Gaps = 36/280 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K VTWN N L + F + D D+I++Q + R +S F Y +W+ A
Sbjct: 1 MKLVTWNVNGLRACMNKG---FKESMEKLDADIISIQETKMQREQASFDFPGYYEYWNSA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ + +P V++ L +++ +GRVI AE++ FYL+N Y PN+ +
Sbjct: 58 VKKGYSGTAIFSR--IKPLSVTYGL--GIEEHDQEGRVITAEYDDFYLVNVYTPNS--QR 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R W+ Q + S K I CGD+NV+HE ID+ +P+
Sbjct: 112 ELARLSYRMAWEDAFQAYCEDLSKKKTTIVCGDMNVAHEPIDLKNPD------------- 158
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
+ GF+ ER++ A L G +D++R L+ +++ + WS + R R
Sbjct: 159 --SNHHNAGFSDEERQKLDAFLARG-FVDSFRMLYPDREGAYTW-WSYMFKARERNAGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLE 317
IDYF+VSE +D+I + + GSDHCPV LE
Sbjct: 215 IDYFLVSEAGRDKIRDVTI------MNEIMGSDHCPVVLE 248
>gi|187735459|ref|YP_001877571.1| exodeoxyribonuclease III Xth [Akkermansia muciniphila ATCC BAA-835]
gi|187425511|gb|ACD04790.1| exodeoxyribonuclease III Xth [Akkermansia muciniphila ATCC BAA-835]
Length = 253
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 92/286 (32%), Positives = 138/286 (48%), Gaps = 44/286 (15%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ-ILMRA-------LSSPPFKNYQ 93
+K V+WN N L + ++ + +PDV+ LQ I R +SS P +Q
Sbjct: 1 MKLVSWNVNGLRAVLGKG---MADAVDALEPDVLCLQEIKARPEQVKDLWISSWP---HQ 54
Query: 94 IWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPN 153
+W + Y+G +L + + +S S+ +++ +GRV EFE FYL+N Y PN
Sbjct: 55 LWNPAEKAGYSGVLILSRV----RPLSTSVGIGWPEHDREGRVCTMEFEGFYLVNCYTPN 110
Query: 154 NGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLN 212
+ + E R +WD +E+V + KP+++CGDLNV+HEEID++ P
Sbjct: 111 S--QNELVRLPYREQWDAAFREYVAGLAETKPVVFCGDLNVAHEEIDIARP--------- 159
Query: 213 GYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYR 272
KE+ GF+ ER F +L+ G D +R LH E+ + WS + R
Sbjct: 160 ------KENRFSAGFSDQERAGFTLLLEAG-FTDTFRALHPEEPGWYSW-WSYRAGARAR 211
Query: 273 GKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF VS L R+ + GSDHCPVSLE+
Sbjct: 212 NIGWRIDYFCVSNPLASRVKDAAIH------PDVTGSDHCPVSLEI 251
>gi|423076274|ref|ZP_17064987.1| exodeoxyribonuclease III [Desulfitobacterium hafniense DP7]
gi|361852634|gb|EHL04857.1| exodeoxyribonuclease III [Desulfitobacterium hafniense DP7]
Length = 250
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 133/281 (47%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPFK--NYQIWWSLA 99
+K ++WN N L + F +F D+ LQ PF+ Y +W+ A
Sbjct: 1 MKLISWNVNGLRACLNKG---FMDFFQQEQADIFCLQETKLQEEQIPFQLEGYHAYWNFA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ K+ +P VS+ + + +++ +GRVI EF+TFYL+ Y PN+ +
Sbjct: 58 QKKGYSGTAVFAKQ--EPLSVSYGIGQE--EHDQEGRVITLEFDTFYLVTVYTPNS--QR 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++ KP+I CGDLNV+H EID+ +P
Sbjct: 112 DLARLDYRMIWEAEFLGYLKNLEKSKPVILCGDLNVAHTEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GFT ER +F +LK G ID +R + +K + WS + R
Sbjct: 158 -KTNRKNAGFTDEERAKFSELLKNG-FIDTFRHFNPDKK-EAYTWWSYMFNARANNAGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF VSE LK+ + + + GSDHCPV LE+
Sbjct: 215 IDYFCVSESLKNEL------KDAMIYDQIMGSDHCPVGLEI 249
>gi|442804155|ref|YP_007372304.1| exodeoxyribonuclease III [Clostridium stercorarium subsp.
stercorarium DSM 8532]
gi|442740005|gb|AGC67694.1| exodeoxyribonuclease III [Clostridium stercorarium subsp.
stercorarium DSM 8532]
Length = 251
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 85/281 (30%), Positives = 144/281 (51%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K V+WN N + + + +F N ++ D+ +Q + + + Y +W+ A
Sbjct: 1 MKLVSWNVNGIRACLAKGFMDFFNSVS---ADIFCIQETKVQQGQVQLDLEGYYQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTAL ++ +P V + +++ +GRV+ AE++ FYL+ Y PN+ +
Sbjct: 58 IRKGYSGTALFTRE--KPLSVVDGIGMN--EHDNEGRVLTAEYDKFYLVTVYTPNS--QR 111
Query: 159 EENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R KW+ +E++ + + KP+I CGDLNV+H EID+ +PE A + N
Sbjct: 112 GLTRLDYRMKWEDDFREYLKRLDTTKPVIICGDLNVAHREIDIKNPE---ANRRNA---- 164
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
GFT ER++ +++ G D++R+L+ +K D WS + + R
Sbjct: 165 --------GFTDEEREKMTMLIQSG-FTDSFRYLYPDK-TDAYTWWSYMFNAREKNIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+VS+ ++D+I M YGSDHCPV LE+
Sbjct: 215 IDYFLVSDRIRDKIRDAGMYSE------IYGSDHCPVFLEI 249
>gi|336420229|ref|ZP_08600467.1| exodeoxyribonuclease III [Fusobacterium sp. 11_3_2]
gi|336161634|gb|EGN64634.1| exodeoxyribonuclease III [Fusobacterium sp. 11_3_2]
Length = 253
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 90/287 (31%), Positives = 143/287 (49%), Gaps = 48/287 (16%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N + +K F ++ + D+ LQ L K Y +W+ A
Sbjct: 1 MKLISWNVNGIRAAIKKG---FLDYFNEQNADIFCLQETKLSAGQLDLELKGYHQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K+ +P VS+ L +++ +GRVI EFE FY++ Y PN+ K+
Sbjct: 58 EKKGYSGTAIFTKQ--EPLSVSYGL--GIEEHDKEGRVITLEFEKFYMVTVYTPNS--KD 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R W+ ++++ K P++ CGDLNV+H+EID+ +P
Sbjct: 112 ELLRLDYRMIWEDEFRKYLKNLEKKKPVVVCGDLNVAHKEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
K + GFT ER +F +L G ID +R+ + +++ +SW YRG+
Sbjct: 158 -KTNRRNAGFTDEERGKFTELLDSG-FIDTFRYFY--PNLEQVYSWWS-----YRGRARE 208
Query: 277 -----RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF+VS+ L+ ++ E+ IE GSDHCPV L L
Sbjct: 209 NNAGWRIDYFVVSKGLEKNLVDAEIHTQ-IE-----GSDHCPVVLFL 249
>gi|312898827|ref|ZP_07758215.1| exodeoxyribonuclease III [Megasphaera micronuciformis F0359]
gi|310619989|gb|EFQ03561.1| exodeoxyribonuclease III [Megasphaera micronuciformis F0359]
Length = 250
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 85/281 (30%), Positives = 133/281 (47%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+KF++WN N L +K +PE D D+ LQ L Y+ +W+ A
Sbjct: 1 MKFISWNVNGLRAVMKKGFPEI---FKELDADIFCLQETKLQAGQIEMDLPGYEQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
D K Y+GTA+ + +P VS+ + +++ +GR+I EFE FY + Y PN+ +
Sbjct: 58 DKKGYSGTAIFTR--IKPLSVSYGMNID--EHDHEGRLITLEFEDFYFITCYTPNS--QS 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R +W+ + +V + + KP+I+CGDLNV+HEEID+ +P
Sbjct: 112 ELARLDYRMRWEDDFRNYVTELNRTKPVIFCGDLNVAHEEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER + +L G D +R+ + +K+ + WS + R
Sbjct: 158 -KTNRKNAGFSDEERAKMTELLAAG-FTDTWRYFYPDKEGVYSW-WSYRFKARQNNSGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYFI S L R+ + GSDHCPV L +
Sbjct: 215 IDYFITSSALDSRL------KEALIYTNIEGSDHCPVGLVI 249
>gi|384888368|ref|YP_005762879.1| exodeoxyribonuclease [Helicobacter pylori 52]
gi|261840198|gb|ACX99963.1| exodeoxyribonuclease [Helicobacter pylori 52]
Length = 250
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 137/281 (48%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D DV +Q + + + FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQQEQNIFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGINID--EHDKEGRVVTCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER +F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEERGKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKDIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|317056539|ref|YP_004105006.1| exodeoxyribonuclease III Xth [Ruminococcus albus 7]
gi|315448808|gb|ADU22372.1| exodeoxyribonuclease III Xth [Ruminococcus albus 7]
Length = 250
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 137/281 (48%), Gaps = 37/281 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPF--KNYQIWWSLA 99
+KF++WN N ++ F +F T D D+ +Q F + Y ++ A
Sbjct: 1 MKFISWNVNGFRACLQKG---FGDFFTAADADIFCIQETKMQPDQADFSPEGYLKYFHSA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ KK +P +V F L T + +GRVI EFE +Y + Y PN +
Sbjct: 58 VKKGYSGTAVYTKK--EPLEVKFGLNGT---HTDEGRVITCEFEDYYFVCCYVPNA--QN 110
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R +++ ++ ++ Q KP+++CGDLNV+HEEID+ +P
Sbjct: 111 ELKRIDYRMEFEDDMRAYLSQLDKTKPVVYCGDLNVAHEEIDLKNP-------------- 156
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + G GF+ ER +F +L G D +R L+ +K + WS + R
Sbjct: 157 -KSNAGNAGFSDEERGKFTELLGAG-FADTFRRLYPDKAGAYSW-WSYRFNARKNNAGWR 213
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+VSE L D++ ++ L GSDHCPV L++
Sbjct: 214 IDYFVVSERLMDKVKDSKI------LSDITGSDHCPVELDI 248
>gi|291276452|ref|YP_003516224.1| exodeoxyribonuclease [Helicobacter mustelae 12198]
gi|290963646|emb|CBG39478.1| putative exodeoxyribonuclease [Helicobacter mustelae 12198]
Length = 250
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 88/284 (30%), Positives = 142/284 (50%), Gaps = 40/284 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
++ ++WN N L + F +F D D+ +Q + + F Y +W+ A
Sbjct: 1 MRLISWNVNGLRACMNKG---FMDFFRQIDADIFCIQESKMHPDQADFVFDGYHGYWNSA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+G +L K+ +P V + + ++ +GRVI AE+ FYL+N Y PN+ K
Sbjct: 58 EKKGYSGVVVLSKQ--EPLCVEYDM--GIEHHDKEGRVICAEYPDFYLINVYTPNS--KR 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E + R +W+ F+ KPLI CGDLNV+H+EID+ +P
Sbjct: 112 ELERLEYRMQWEDDFLNFLKNLERKKPLIICGDLNVAHKEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
K + GFT ER++ +L+ G ID +R+ + D++ +SW + +G+ R
Sbjct: 158 -KTNRRNAGFTDEEREKMTTLLENG-FIDTFRYFY--PDLEGAYSW-WSYMGRARQNNTG 212
Query: 277 -RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
RIDYF+ SE L+ R+I ++ + GSDHCPV L +S
Sbjct: 213 WRIDYFLCSEILQKRLIEAKIYSEIL------GSDHCPVGLVIS 250
>gi|260589662|ref|ZP_05855575.1| exodeoxyribonuclease III [Blautia hansenii DSM 20583]
gi|331083093|ref|ZP_08332210.1| exodeoxyribonuclease [Lachnospiraceae bacterium 6_1_63FAA]
gi|260539902|gb|EEX20471.1| exodeoxyribonuclease III [Blautia hansenii DSM 20583]
gi|330405095|gb|EGG84632.1| exodeoxyribonuclease [Lachnospiraceae bacterium 6_1_63FAA]
Length = 251
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 83/281 (29%), Positives = 136/281 (48%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPFK--NYQIWWSLA 99
+KF++WN N L VK F+ F D D +Q F+ Y +W+ A
Sbjct: 1 MKFISWNVNGLRACVKKG---FTEFFEQTDADFFCIQETKLQEGQIDFEPEGYFCYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ KK +P V + + +++ +GRVI E+E FY++ Y PN+ +
Sbjct: 58 VKKGYSGTAIFAKK--EPLSVQYGI--GIEEHDQEGRVITLEYENFYMVTVYTPNS--QS 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R +W+ + ++ Q KP+I CGDLNV+H+EID+ +P
Sbjct: 112 ELARLSYRMQWEDDFRAYLQQLDEKKPVIMCGDLNVAHQEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GFT ER++F L G D +R+ + +K + WS + + R
Sbjct: 158 -KTNRHNAGFTDEEREKFTTFLDAG-FTDTFRYFYPDKTEIYSW-WSYRFKAREKNAGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF S+ L +++++ + +GSDHCPV +++
Sbjct: 215 IDYFCTSKRLDEKLLSASIHT------DIFGSDHCPVEVQI 249
>gi|365904744|ref|ZP_09442503.1| Exodeoxyribonuclease III [Lactobacillus versmoldensis KCTC 3814]
Length = 253
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 87/282 (30%), Positives = 134/282 (47%), Gaps = 37/282 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L VK+ +F + D D+ ++Q L Y +++ A
Sbjct: 1 MKLISWNVNGLRAVVKH---DFKDTFEKLDADIFSIQETKLQEGQIDLDLPGYHQYFNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
D K Y+GTA+ K+ +P + L+ +E GR I E+ FYL+N+Y PN+ K
Sbjct: 58 DRKGYSGTAVFSKQ--EPLNIETGLDDDEFNHE--GRTITLEYPDFYLINSYTPNSQPKL 113
Query: 159 EENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPN 218
+ F R D + KP+I CGDLNV+H EID+ + +
Sbjct: 114 KRLDF-RMGYNDAMWKHMQTLSKKKPVILCGDLNVAHNEIDIKN---------------D 157
Query: 219 KEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMR 277
K + PGF+ ER +F +L G D +R+LH E+ +S WS + R
Sbjct: 158 KTNHKNPGFSDEERNKFSELLDSG-FTDTFRYLHPEE---VKYSWWSYRFNARKNNAGWR 213
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
IDYF++S +D I ++ L YGSDHCP+ L+L+
Sbjct: 214 IDYFVISNNGQDLIQNADI------LNDVYGSDHCPIQLDLN 249
>gi|350268379|ref|YP_004879686.1| exodeoxyribonuclease III [Bacillus subtilis subsp. spizizenii
TU-B-10]
gi|349601266|gb|AEP89054.1| exodeoxyribonuclease III [Bacillus subtilis subsp. spizizenii
TU-B-10]
Length = 252
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 87/284 (30%), Positives = 144/284 (50%), Gaps = 39/284 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ---ILMRALSSPPFKNYQIWWSL 98
+K ++WN N L R +F +++ D D+I LQ I + P + Y ++W+
Sbjct: 1 MKLISWNVNGL--RAVMRKMDFLSYLKEEDADIICLQETKIQDGQVDLQP-EGYHVYWNY 57
Query: 99 ADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWK 157
A K Y+GTA+ K+ +P V + + +++ +GRVI EFE +++ Y PN+ K
Sbjct: 58 AVKKGYSGTAVFSKQ--KPLHVMYGI--GIEEHDQEGRVITLEFENLFVMTVYTPNS--K 111
Query: 158 EEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVP 216
R +W++ + ++L+ K P+I CGDLNV+H+EID+ +P
Sbjct: 112 RGLERIDYRMQWEEALLSYILELDKKKPVILCGDLNVAHQEIDLKNP------------- 158
Query: 217 PNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG-KYRGKR 275
K + GF+ ER F L+ G +D++R H D++ +SW G + R
Sbjct: 159 --KANRNNAGFSEQERGAFTRFLEAG-FVDSFR--HVYPDLEGAYSWWSYRAGARDRNIG 213
Query: 276 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
R+DYF+VSE LK++I + + GSDHCPV L ++
Sbjct: 214 WRLDYFVVSERLKEQIEDASISADVM------GSDHCPVELMIN 251
>gi|357054575|ref|ZP_09115657.1| exodeoxyribonuclease [Clostridium clostridioforme 2_1_49FAA]
gi|355384175|gb|EHG31244.1| exodeoxyribonuclease [Clostridium clostridioforme 2_1_49FAA]
Length = 251
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 86/281 (30%), Positives = 138/281 (49%), Gaps = 38/281 (13%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLAD 100
K ++WN N L V F +F D +V +Q L Y +W+ A
Sbjct: 3 KLISWNVNGLRACVGKG---FLDFFREADANVFCIQESKLQEGQIELDLPGYHQYWNYAR 59
Query: 101 SK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEE 159
K Y+GTA+ K+ +P VS+ + +++ +GRVI AEF +Y++ Y PN+ ++
Sbjct: 60 KKGYSGTAMFTKE--EPMSVSYGIGME--EHDTEGRVITAEFPEYYVVTCYTPNS--QDG 113
Query: 160 ENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPN 218
R KW+ ++ + KP+++CGDLNV+H+EID+ +P
Sbjct: 114 LARLDYRMKWEDDFLAYLKKLEKNKPVVFCGDLNVAHKEIDLKNP--------------- 158
Query: 219 KEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMR 277
K + GFT ER +F +L G +D +R+ + D++ +S WS + + R
Sbjct: 159 KTNRKNAGFTDEERGKFTDLLAAG-FVDTFRYFY--PDLEGIYSWWSYRFSARAKNAGWR 215
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF VSE LKDR+++ + + GSDHCPV L +
Sbjct: 216 IDYFCVSESLKDRLVSASIHNTVM------GSDHCPVELVI 250
>gi|113983|sp|P23196.2|APEX1_BOVIN RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; AltName: Full=REF-1; AltName: Full=Redox
factor-1; Contains: RecName: Full=DNA-(apurinic or
apyrimidinic site) lyase, mitochondrial
gi|118|emb|CAA40014.1| BAP 1 [Bos taurus]
Length = 318
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 91/320 (28%), Positives = 162/320 (50%), Gaps = 45/320 (14%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
EKE + L D +T+ + K LK +WN + L +K + +++
Sbjct: 34 EKEAVGEGAVLYEDPPDQKTSPSG-----KSATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQILMRALSSPPFK-------NYQIWWSLADSK-YAGTALLVKKCFQPKKVS 120
PD++ LQ + + P + ++Q W + +D + Y+G LL ++C P KVS
Sbjct: 86 EEAPDILCLQETKCSENKLPVELQELSGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVS 143
Query: 121 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ- 179
+ + + +++ +GRVI+AE++ F L+ Y PN G + R++WD+ ++F+
Sbjct: 144 YGIGEE--EHDQEGRVIVAEYDAFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGL 199
Query: 180 CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 239
S KPL+ CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L
Sbjct: 200 ASRKPLVLCGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELL 244
Query: 240 KEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGH 299
+ L D++R L+ F W+ + + R+DYF++S+ + + +++
Sbjct: 245 QAVPLTDSFRHLYPNTAYAYTF-WTYMMNARSKNVGWRLDYFLLSQSVLPALCDSKIRSK 303
Query: 300 GIELEGFYGSDHCPVSLELS 319
+ GSDHCP++L L+
Sbjct: 304 AL------GSDHCPITLYLA 317
>gi|336435960|ref|ZP_08615673.1| exodeoxyribonuclease [Lachnospiraceae bacterium 1_4_56FAA]
gi|336008000|gb|EGN38019.1| exodeoxyribonuclease [Lachnospiraceae bacterium 1_4_56FAA]
Length = 250
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/281 (30%), Positives = 138/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K V+WN N L V+ F + D D+ +Q + Y +W+ A
Sbjct: 1 MKLVSWNVNGLRACVQKG---FQDIFREIDADIFCVQETKMQEGQLDLELDGYYQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ K+ +P V++ + +++ +GRVI EFE FY + Y PN+ +
Sbjct: 58 VKKGYSGTAVFTKQ--EPIGVTYGI--GIEEHDQEGRVITCEFEDFYFVTVYTPNS--QN 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R +W+ + ++ KP++ GD+NV+H EID+ +P+
Sbjct: 112 ELKRLDYRMRWEDDFRAYLKALDEKKPVVVTGDMNVAHAEIDLKNPK------------S 159
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
N+++ GFT ER +F +L G ID +R+ + +++ + WS + + R
Sbjct: 160 NRQN---AGFTDEERGKFTELLDAG-FIDTFRYFYPDQEGIYSW-WSYRFKAREKNAGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF VSE +KDR+ ++ L YGSDHCPV LEL
Sbjct: 215 IDYFCVSERMKDRLSDAKI------LTDIYGSDHCPVCLEL 249
>gi|386746941|ref|YP_006220158.1| exodeoxyribonuclease III [Helicobacter pylori HUP-B14]
gi|384553190|gb|AFI08138.1| exodeoxyribonuclease III [Helicobacter pylori HUP-B14]
Length = 250
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 86/281 (30%), Positives = 138/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGINME--EHDKEGRVVTCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLNYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER++F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEEREKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKDIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK + + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTCL------KDALIYKDILGSDHCPVGLEL 249
>gi|409386093|ref|ZP_11238562.1| Exodeoxyribonuclease III [Lactococcus raffinolactis 4877]
gi|399206574|emb|CCK19477.1| Exodeoxyribonuclease III [Lactococcus raffinolactis 4877]
Length = 277
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 93/304 (30%), Positives = 139/304 (45%), Gaps = 58/304 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWP--EFSNFITT----FDPDVIALQILMRALSSPP------- 88
+KF++WN +SL + ++ P + S + T D DVIALQ + P
Sbjct: 3 MKFISWNIDSLNAALTSDSPRAQLSQAVLTHLASLDADVIALQETKLSAKGPTKKHLEIL 62
Query: 89 ---FKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVSFSLEKTAL----KYEPDGRVI 137
F Y I W A YAGT L K+ ++S ++E + + +GR+I
Sbjct: 63 AERFPGYAIAWRSSVEPARKGYAGTMFLYKQ-----ELSVTIETPEIGAPSTMDSEGRII 117
Query: 138 LAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHE 196
EF+ FYL Y PN G + R+ WD++ ++++L+ KP+I GD NV+H
Sbjct: 118 TLEFDNFYLTQVYTPNAG--DGLKRLAERQIWDEKYRDYLLELDAKKPVIATGDYNVAHF 175
Query: 197 EIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKD 256
EID++HP + PGFT ER+ F +L G D +R +H +
Sbjct: 176 EIDLAHP---------------NNNRNSPGFTDEERQGFTNLLSAG-FTDTFRHVHGQ-- 217
Query: 257 MDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPV 314
+ +SW + K RIDYFI SE + D+I A EM G DH P+
Sbjct: 218 VPNVYSWWAQRSKTSKINNAGWRIDYFIASERIADKICASEMIDSGAR------QDHTPI 271
Query: 315 SLEL 318
LE+
Sbjct: 272 LLEI 275
>gi|404371536|ref|ZP_10976840.1| exodeoxyribonuclease III (xth) [Clostridium sp. 7_2_43FAA]
gi|226912337|gb|EEH97538.1| exodeoxyribonuclease III (xth) [Clostridium sp. 7_2_43FAA]
Length = 251
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 83/282 (29%), Positives = 140/282 (49%), Gaps = 36/282 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N + V + E+ D D+ +Q L + Y +W+ A
Sbjct: 1 MKLISWNVNGIRSCVTKGFLEY---FKEMDADIFCIQESKLQEGQIDLELEGYHQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K+ +P VS+ L +++ +GRVI EFE FY++ Y PN+ K
Sbjct: 58 EKKGYSGTAIFTKE--KPLSVSYGL--GIEEHDKEGRVITLEFENFYMVTVYTPNS--KN 111
Query: 159 EENSFQRRRKWDKRIQEFV-LQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R W+ ++++ + KP+I CGDLNV+H+EID+ +P
Sbjct: 112 ELARLDYRMVWEDAFRDYLKVLDEKKPVIVCGDLNVAHKEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GFT ER +F +L G +D +R+ + + ++ WS + + R
Sbjct: 158 -KTNLRNAGFTEEERSKFTELLNAG-FVDTFRYFYPD-EVGAYSWWSYRFNARAKNAGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
IDYF+VS +KD++ ++ + GSDHCPV L+++
Sbjct: 215 IDYFLVSNSVKDKLEDAKIHSEVL------GSDHCPVELKIN 250
>gi|345314093|ref|XP_001516262.2| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like
[Ornithorhynchus anatinus]
Length = 320
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 90/296 (30%), Positives = 152/296 (51%), Gaps = 40/296 (13%)
Query: 33 SEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSS--PPFK 90
S + + LK +WN + L VK + +++ PD++ LQ A S P K
Sbjct: 55 SSSSGQPATLKICSWNVDGLRAWVKK---KGLDWVREEAPDILCLQETKCAESKLPPELK 111
Query: 91 N-----YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETF 144
+ ++ W + AD + Y+G LL ++ +P VS+ + + +++ +GRVI+AEFE F
Sbjct: 112 DLSDFPHRYWAAPADKEGYSGVGLLSRR--RPLSVSYGIGEE--EHDQEGRVIVAEFEAF 167
Query: 145 YLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV-LQCSGKPLIWCGDLNVSHEEIDVSHP 203
L+ Y PN+G + R++WD+ + F+ Q + KPL+ CGDLNV+HEEID+ +P
Sbjct: 168 VLVTVYVPNSGRGLVRLDY--RQRWDQAFRRFLQAQAARKPLVLCGDLNVAHEEIDLRNP 225
Query: 204 EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSW 263
+ NK++ GFT ER+ FG +L L D++R L+ F W
Sbjct: 226 KG------------NKKN---AGFTPQERQGFGELLGTVDLADSFRHLYPAAAYAYTF-W 269
Query: 264 SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
+ + + R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 270 TYMMNARSKNVGWRLDYFLLSRALLPSLCDSKIRSAAL------GSDHCPITLYLA 319
>gi|260663817|ref|ZP_05864702.1| exodeoxyribonuclease III [Lactobacillus fermentum 28-3-CHN]
gi|260551578|gb|EEX24765.1| exodeoxyribonuclease III [Lactobacillus fermentum 28-3-CHN]
Length = 279
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 89/306 (29%), Positives = 138/306 (45%), Gaps = 50/306 (16%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNF------ITTFDPDVIALQILMRALSSPP------- 88
++F++WN +S+ + I PDVIA+Q + S P
Sbjct: 1 MRFISWNIDSINAALTGTSARAEETRAVLEKIKAAAPDVIAIQETKLSKSGPTKKHQGVL 60
Query: 89 ---FKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEF 141
F Y + W A YAGT L K+ PK V++ + +GR+I EF
Sbjct: 61 AELFAGYTVVWRSSVEPARKGYAGTMYLYKESLTPK-VTYPTIGAPEPMDEEGRIITLEF 119
Query: 142 ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDV 200
+ FYL Y PN+G + R++WD R +E++ + KP+I GD NV+HEEID+
Sbjct: 120 KNFYLTEVYTPNSGTGLKR--LAERQEWDDRYREYLTELDRQKPVIASGDFNVAHEEIDL 177
Query: 201 SHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCG 260
+HP + GFT ER++F A+L G D++R LH D
Sbjct: 178 AHP---------------ANNHHSAGFTDEEREKFTALLAAG-FTDSFRSLH--PDETGA 219
Query: 261 FSWSGN--PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
+SW K RIDY++VS+ L D++++ M G DH P+ L++
Sbjct: 220 YSWWAQRAVTSKVNNSGWRIDYWLVSDRLADQVVSSTMIDSGER------RDHAPIQLDI 273
Query: 319 SEASSD 324
+ ++D
Sbjct: 274 NIPAAD 279
>gi|339448653|ref|ZP_08652209.1| exodeoxyribonuclease III Xth [Lactobacillus fructivorans KCTC 3543]
Length = 256
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 88/285 (30%), Positives = 135/285 (47%), Gaps = 47/285 (16%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFI---------TTFDPDVIALQILMRALSSPPFKNY 92
+ F++WN N L VK N+ EF N I T + IAL++ P Y
Sbjct: 1 MNFISWNVNGLRSAVKKNFYEFFNEIDADFFNVQETRVHENDIALEV--------PGNYY 52
Query: 93 QIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAP 152
Q W S YAG K + + V + ++ T E GR + E+ FYL+NTY P
Sbjct: 53 QYWDSAERPGYAGVTTFTKH--KAQNVIYGVDGTDTDVE--GRCLTLEYPDFYLINTYVP 108
Query: 153 NNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKL 211
N+G EE R WD++ FV + +G KP+I GD++V+++ ID+ PE
Sbjct: 109 NSG--EELQRLDYRLDWDQKFITFVNKLTGTKPVIIGGDMSVAYQPIDIDDPE------- 159
Query: 212 NGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKY 271
ED + G+T ER FG +L G +D +R LH + + WS +
Sbjct: 160 --------EDHHKAGYTQQERDDFGRLLASG-FVDTFRALHPHQSGAYTW-WSYRYDERA 209
Query: 272 RGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
R + R+DYF+VS+ +++ + + G+ + GSDH P+ L
Sbjct: 210 RDRGWRMDYFLVSDSIQNDVAESNILGNVM------GSDHAPIQL 248
>gi|257789897|ref|YP_003180503.1| exodeoxyribonuclease III Xth [Eggerthella lenta DSM 2243]
gi|317489355|ref|ZP_07947868.1| exodeoxyribonuclease III [Eggerthella sp. 1_3_56FAA]
gi|325832619|ref|ZP_08165417.1| exodeoxyribonuclease III [Eggerthella sp. HGA1]
gi|257473794|gb|ACV54114.1| exodeoxyribonuclease III Xth [Eggerthella lenta DSM 2243]
gi|316911526|gb|EFV33122.1| exodeoxyribonuclease III [Eggerthella sp. 1_3_56FAA]
gi|325485940|gb|EGC88400.1| exodeoxyribonuclease III [Eggerthella sp. HGA1]
Length = 285
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 94/319 (29%), Positives = 145/319 (45%), Gaps = 78/319 (24%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
++FV+WN N L +K F + + D D++ALQ L ++ Y+ +WS A
Sbjct: 1 MRFVSWNVNGLRAVLKKG---FEDIVCELDADIVALQETKLQEGQATLDLPQYREYWSYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K+ QP + L L E GR++ EF F+ ++ Y PN +
Sbjct: 58 EKKGYSGTAIFCKE--QPLQALHGLGFPHLDTE--GRIVALEFPKFWFVDVYTPNA--QN 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG------------------------------------ 182
E R +WD ++F C G
Sbjct: 112 ELARIDHRMEWDDAFRDF---CKGLEEGVLPAGVPVERPALGEGHVAISELPLTQPGETA 168
Query: 183 --KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 240
KP++ CGD NV+H+EID+ +P PN+ G+ GF+ ER +F +L+
Sbjct: 169 DPKPVVMCGDFNVAHQEIDLKNPG------------PNR---GKAGFSDEERGKFTDLLE 213
Query: 241 EGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGH 299
G +D++R LH D+ +S WS + RIDYF+VS+EL +I + +
Sbjct: 214 VG-FVDSFRHLH--PDVTGAYSWWSYRFKARQTNAGWRIDYFLVSDELAPKIQSACI--- 267
Query: 300 GIELEGFYGSDHCPVSLEL 318
+ YGSDHCPV +EL
Sbjct: 268 ---YDEVYGSDHCPVGIEL 283
>gi|403071080|ref|ZP_10912412.1| exodeoxyribonuclease [Oceanobacillus sp. Ndiop]
Length = 253
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 88/283 (31%), Positives = 141/283 (49%), Gaps = 36/283 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K V+WN N + VK + ++ N I D D+ +Q L + Y +W+ A
Sbjct: 1 MKLVSWNVNGIRACVKKGFLDYFNEI---DADIFCIQESKLQEGQINLELDGYHQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ KK +P V + L K + +GR+I EF F+L+N Y PN+ K
Sbjct: 58 IRKGYSGTAVFTKK--KPLHVRYGLGKE--DNQEEGRIITLEFNEFFLVNVYTPNS--KR 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R +W+ + ++ + KP+I+CGDLNV+H+EID+ +
Sbjct: 112 DLTRLDYRLEWEDELYSYLRELDEEKPVIYCGDLNVAHQEIDLKN--------------- 156
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
+K + G GFT ER + +L G +D R H +K+ + WS + R R
Sbjct: 157 HKTNHGNSGFTAQERGKMTRLLDSG-FVDTLRHFHPDKEGIYSW-WSYMKTIRERNIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 320
IDYFIVS+ L + ++ H + + GSDHCPV+L++ +
Sbjct: 215 IDYFIVSKRLVPYLKNSDV--HSLVM----GSDHCPVALDMDD 251
>gi|160915303|ref|ZP_02077516.1| hypothetical protein EUBDOL_01312 [Eubacterium dolichum DSM 3991]
gi|158433102|gb|EDP11391.1| exodeoxyribonuclease III [Eubacterium dolichum DSM 3991]
Length = 252
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 89/283 (31%), Positives = 141/283 (49%), Gaps = 36/283 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K V+WN N + +K F +F D D+ +Q + Y + + A
Sbjct: 1 MKLVSWNVNGIRACMKKG---FMDFFQAIDADIFCIQETKMQPGQLEIETDGYVQYMNSA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
D K Y+G + KK +P VS+ L +++ +GRVI E++TFYL+ Y PN+ K+
Sbjct: 58 DKKGYSGVMVFSKK--EPLSVSYGLGID--EHDHEGRVITCEYDTFYLVCVYTPNS--KD 111
Query: 159 EENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R +W+ + ++ + K ++ CGDLNV+H+EID+ +P
Sbjct: 112 GLLRLDYRMQWEDAFRAYLQRLKESKSVVVCGDLNVAHQEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GFT ER++ +L G +D+YR+L+ +K+ + WS + + R
Sbjct: 158 -KTNRRNAGFTDEEREKMTTLLSSG-FVDSYRYLYPDKENVYSW-WSYRFSAREKNAGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 320
IDYF+VSE+ K+RI E Q H YGSDHCPVSL +
Sbjct: 215 IDYFLVSEDAKERIE--EAQIH----TDIYGSDHCPVSLSFKD 251
>gi|365854004|ref|ZP_09394256.1| exodeoxyribonuclease III [Lactobacillus parafarraginis F0439]
gi|363711540|gb|EHL95270.1| exodeoxyribonuclease III [Lactobacillus parafarraginis F0439]
Length = 250
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 89/282 (31%), Positives = 135/282 (47%), Gaps = 38/282 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+KF++WN N L VK +F+ D D ++Q + Y +++ A
Sbjct: 1 MKFISWNVNGLRAVVKK---DFAATFNKLDADFFSIQETKMQEGQLELDLPGYHQYFNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTAL K+ +P V + ++ +E GR I E+ FYL+ +Y PN+G
Sbjct: 58 ERKGYSGTALFAKQ--EPMSVMYGIQSDEFDHE--GRAITLEYPDFYLVTSYVPNSGAGL 113
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ F R WD Q+++ + KP+I CGDLNV+H+ ID+ +P+
Sbjct: 114 KRLDF--RMGWDAAFQDYLSRLDKEKPVILCGDLNVAHKTIDLKNPQ------------- 158
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
+ GFT ER F L G +D++R H DM+ +S WS + R
Sbjct: 159 --SNHHNAGFTDEERDSFTRFLDMG-FMDSFR--HFYPDMEDIYSWWSYRFHARDRNAGW 213
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF+ S L +I ++ L YGSDHCPV+L L
Sbjct: 214 RIDYFVTSNRLAPKIADSKI------LTDIYGSDHCPVALIL 249
>gi|420427852|ref|ZP_14926893.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-9]
gi|393040038|gb|EJB41059.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-9]
Length = 248
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/278 (30%), Positives = 137/278 (49%), Gaps = 36/278 (12%)
Query: 45 VTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLADSK 102
++WN N L + F +F + D D+ +Q + + ++ FK Y +W+ A K
Sbjct: 2 ISWNVNGLRACMTKG---FMDFFNSVDADIFCIQESKMQQEQNTFEFKGYFDFWNCAIKK 58
Query: 103 -YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEEN 161
Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+N Y PN+ ++ +
Sbjct: 59 GYSGVVTFTKK--EPLSVSYGI--NIEEHDKEGRVVTCEFESFYLVNVYTPNS--QQALS 112
Query: 162 SFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKE 220
R W+ ++F+ KP+I CGDLNV+H EID+ +P K
Sbjct: 113 RLSYRMSWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENP---------------KT 157
Query: 221 DWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDY 280
+ GF+ ER++F +L G ID +R+ + K+ + WS + + RIDY
Sbjct: 158 NRKNAGFSDEEREKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKDIGWRIDY 215
Query: 281 FIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
F+ S LK R+ + + GSDHCPV LEL
Sbjct: 216 FLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 247
>gi|163814023|ref|ZP_02205416.1| hypothetical protein COPEUT_00176 [Coprococcus eutactus ATCC 27759]
gi|158450717|gb|EDP27712.1| exodeoxyribonuclease III [Coprococcus eutactus ATCC 27759]
Length = 257
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/280 (28%), Positives = 137/280 (48%), Gaps = 36/280 (12%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLAD 100
K ++WN N + F +F + D D+ +Q + + Y +W+ AD
Sbjct: 8 KLISWNVNGIRACAGKG---FMDFFNSIDADIFCIQESKMQEGQLTLDMPGYYQYWNYAD 64
Query: 101 SK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEE 159
K Y+GTA+ K+ K +S + +++ +GRVI E+E FY++ Y PN+ + E
Sbjct: 65 KKGYSGTAIFTKE----KSLSETKGIGIDEHDHEGRVITLEYENFYMVTVYTPNS--QNE 118
Query: 160 ENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPN 218
R KW+ + ++ + KP+I CGD+NV+H EID+ +P
Sbjct: 119 LARLDYRMKWEDDFRAYLKKLEENKPVIVCGDMNVAHNEIDLKNP--------------- 163
Query: 219 KEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRI 278
K + GFT ER++ +L +G ID +R+ + +++ + WS + + RI
Sbjct: 164 KTNRKNAGFTDEEREKMTVLLDDG-FIDTFRYFYPDQENIYSW-WSYRFKAREKNAGWRI 221
Query: 279 DYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
DYF+ SE LKD++I ++ GSDHCPV L++
Sbjct: 222 DYFLTSESLKDKLIDAKIH------TDIMGSDHCPVELDI 255
>gi|297824099|ref|XP_002879932.1| apurinic endonuclease-redox protein [Arabidopsis lyrata subsp.
lyrata]
gi|297325771|gb|EFH56191.1| apurinic endonuclease-redox protein [Arabidopsis lyrata subsp.
lyrata]
Length = 550
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 94/294 (31%), Positives = 148/294 (50%), Gaps = 50/294 (17%)
Query: 42 LKFVTWNANSL--LLRVKN----NWPEFSNFITTFDPDVIALQ-ILMRALSSPPFKNYQI 94
+K +TWN N L LL++++ + NF D++ LQ ++ KN I
Sbjct: 288 VKVMTWNVNGLRALLKLESFSALQLAQRENF------DILCLQETKLQVKDVEEIKNTLI 341
Query: 95 ------WWSLADSK--YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYL 146
+WS + SK Y+GTA++ + +P V + + ++ +GR++ AEF++FYL
Sbjct: 342 DGYDHSFWSCSVSKLGYSGTAIISR--IKPLSVRYGTGLSGSDHDMEGRIVTAEFDSFYL 399
Query: 147 LNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEF 205
+NTY PN+G + S+ R +WD+ + + + KP++ GDLN +HEEID+ +P
Sbjct: 400 INTYVPNSGDGLKRLSY-RIEEWDRTLSNHIKELEKSKPVVLTGDLNCAHEEIDIFNP-- 456
Query: 206 FAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSG 265
A K N GFTI ER+ FGA + +D +R K+ G+++ G
Sbjct: 457 -AGNKRNA------------GFTIEERQSFGANFLDKGFVDTFR---KQHPGVVGYTYWG 500
Query: 266 NPIGKYRGKRM-RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
G + R R+DYF+VSE IA + I L GSDHCP+ L L
Sbjct: 501 YRHGGRKTNRGWRLDYFLVSES-----IAANVHDSYI-LPDINGSDHCPIGLIL 548
>gi|167771017|ref|ZP_02443070.1| hypothetical protein ANACOL_02371 [Anaerotruncus colihominis DSM
17241]
gi|167666687|gb|EDS10817.1| exodeoxyribonuclease III [Anaerotruncus colihominis DSM 17241]
Length = 250
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/282 (30%), Positives = 139/282 (49%), Gaps = 38/282 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K V+WN N L + F +F + D D + LQ + + + YQ +W+ A
Sbjct: 1 MKLVSWNVNGLRACLGKG---FLDFFSAADADAVCLQETKMHQEQADLELPGYQQFWNSA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ + P V++ + +++ +GRVI E+E FYL+N Y PN +
Sbjct: 58 EKKGYSGTAVFTR--VPPLNVTYGIGMA--EHDSEGRVITVEYEPFYLVNCYTPNA--QR 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E + R KW+ + +++ K P++ CGDLNV+H+EID+ +P
Sbjct: 112 ELARLEYRMKWEDDFRAYLMSLDAKKPVVLCGDLNVAHQEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
K + GF+ ER + +L G +D +R L+ D+ ++ WS +
Sbjct: 158 -KTNRRNAGFSDEERAKMTELLAGG-FVDTFRALY--PDVTGAYTWWSYLRRARDTNAGW 213
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYFIVSE L+ + ++ + GSDHCPV L+L
Sbjct: 214 RIDYFIVSERLRGAVHDSRIRADVM------GSDHCPVELDL 249
>gi|313144803|ref|ZP_07806996.1| exodeoxyribonuclease LexA [Helicobacter cinaedi CCUG 18818]
gi|313129834|gb|EFR47451.1| exodeoxyribonuclease LexA [Helicobacter cinaedi CCUG 18818]
gi|396078071|dbj|BAM31447.1| exodeoxyribonuclease [Helicobacter cinaedi ATCC BAA-847]
Length = 251
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/283 (30%), Positives = 141/283 (49%), Gaps = 40/283 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D+ +Q + + F+ Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMNKG---FMDFFNEVNADIFCIQESKMQKDQGDFSFQGYSEYWNSA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+G +L K +P +V++ + + ++ +GR+I AE+E FYL+N Y PN K
Sbjct: 58 EKKGYSGVVVLSK--IKPLQVTYDMGIS--HHDKEGRIITAEYERFYLVNVYTPNA--KR 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E + R +W+ + FV + KP++ CGDLNV+H+EID+ +P
Sbjct: 112 ELERLEYRMEWEDDFRAFVKKLKKHKPVVICGDLNVAHKEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
K + GFT ER + +L+ G ID +R H ++ +SW + +GK R
Sbjct: 158 -KTNRRNAGFTDEERGKMSELLESG-FIDTFR--HFYPTLEGAYSW-WSYMGKARENNTG 212
Query: 277 -RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF+ S L+ + ++ H +GSDHCPV L +
Sbjct: 213 WRIDYFLCSTSLESHLKDAKIYPH------IFGSDHCPVGLSM 249
>gi|336429860|ref|ZP_08609818.1| exodeoxyribonuclease [Lachnospiraceae bacterium 3_1_57FAA_CT1]
gi|336001765|gb|EGN31900.1| exodeoxyribonuclease [Lachnospiraceae bacterium 3_1_57FAA_CT1]
Length = 252
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 90/285 (31%), Positives = 144/285 (50%), Gaps = 38/285 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K V+WN N L + F +F D D+ +Q L S Y +W+ A
Sbjct: 1 MKLVSWNVNGLRACMGKG---FMDFFKEADADIFCIQESKLQEGQISLELPGYHQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ K+ +P VS+ L +++ +GRVI EF FY++ Y PN+ ++
Sbjct: 58 VKKGYSGTAIFTKE--EPLSVSYGLGLE--EHDQEGRVITLEFPDFYMVTVYTPNS--QD 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R W++ +++ + K P+I+CGDLNV+H+EID+ +P
Sbjct: 112 GLARLDYRMTWEEEFLKYLKKLEEKKPVIFCGDLNVAHKEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
K + GFT ER++F +L+ G ID +R+ + D+ +S WS + +
Sbjct: 158 -KTNRKNAGFTDEEREKFSVLLENG-FIDTFRYFY--PDLKDAYSWWSYRFHAREKNAGW 213
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEA 321
RIDYF+VS +LK+R+ + + +GSDHCPV+L L EA
Sbjct: 214 RIDYFLVSPQLKERL------EDAVIYKDVFGSDHCPVALILKEA 252
>gi|167748893|ref|ZP_02421020.1| hypothetical protein ANACAC_03667 [Anaerostipes caccae DSM 14662]
gi|317470265|ref|ZP_07929659.1| exodeoxyribonuclease III [Anaerostipes sp. 3_2_56FAA]
gi|167651863|gb|EDR95992.1| exodeoxyribonuclease III [Anaerostipes caccae DSM 14662]
gi|316902238|gb|EFV24158.1| exodeoxyribonuclease III [Anaerostipes sp. 3_2_56FAA]
Length = 251
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 90/282 (31%), Positives = 136/282 (48%), Gaps = 38/282 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
++ V+WN N L VK F + + D D+ +Q L +Y +W+ A
Sbjct: 2 IQLVSWNVNGLRACVKKG---FLDVMEQLDADIFCIQETKLQEGQIDLELPDYYQYWNYA 58
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K +P V + +E GRVI EF+ ++L+ Y PN+ +
Sbjct: 59 EKKGYSGTAVFTK--IKPLSVKNGIGVDEFDHE--GRVITLEFDDYFLVTCYTPNS--QS 112
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R W++ +E++L+ KP+I CGDLNV+H EID+ +P
Sbjct: 113 ELARLSYRMDWEENFREYLLKLEEDKPVILCGDLNVAHTEIDLKNP-------------- 158
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
K + GFT ER++F +L+ G ID +R H D+ +S WS + +
Sbjct: 159 -KTNRKNAGFTDEEREKFTKLLEAG-FIDTFR--HFYPDVTEAYSWWSYRFRAREKNAGW 214
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF VSE L++R+ + YGSDHCPV L L
Sbjct: 215 RIDYFCVSEGLEERL------AEAVIHTDIYGSDHCPVGLYL 250
>gi|386760994|ref|YP_006234629.1| exodeoxyribonuclease LexA [Helicobacter cinaedi PAGU611]
gi|385146010|dbj|BAM11518.1| exodeoxyribonuclease LexA [Helicobacter cinaedi PAGU611]
Length = 251
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/283 (30%), Positives = 141/283 (49%), Gaps = 40/283 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D+ +Q + + F+ Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMNKG---FMDFFNEVNADIFCIQESKMQKDQGDFSFQGYSEYWNSA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+G +L K +P +V++ + + ++ +GR+I AE+E FYL+N Y PN K
Sbjct: 58 EKKGYSGVVVLSK--IKPLQVAYDMGIS--HHDKEGRIITAEYERFYLVNVYTPNA--KR 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E + R +W+ + FV + KP++ CGDLNV+H+EID+ +P
Sbjct: 112 ELERLEYRMEWEDDFRAFVKKLKKHKPVVICGDLNVAHKEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
K + GFT ER + +L+ G ID +R H ++ +SW + +GK R
Sbjct: 158 -KTNRRNAGFTDEERGKMSELLESG-FIDTFR--HFYPTLEGAYSW-WSYMGKARENNTG 212
Query: 277 -RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF+ S L+ + ++ H +GSDHCPV L +
Sbjct: 213 WRIDYFLCSTSLESHLKDAKIYPH------IFGSDHCPVGLSM 249
>gi|420407656|ref|ZP_14906820.1| exodeoxyribonuclease III [Helicobacter pylori CPY6311]
gi|393021114|gb|EJB22248.1| exodeoxyribonuclease III [Helicobacter pylori CPY6311]
Length = 250
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 86/281 (30%), Positives = 137/281 (48%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGINID--EHDKEGRVVTCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER +F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEERGKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKNIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK + + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLK------TLLKDALIYKDILGSDHCPVGLEL 249
>gi|223985143|ref|ZP_03635238.1| hypothetical protein HOLDEFILI_02544 [Holdemania filiformis DSM
12042]
gi|223962889|gb|EEF67306.1| hypothetical protein HOLDEFILI_02544 [Holdemania filiformis DSM
12042]
Length = 252
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 89/281 (31%), Positives = 139/281 (49%), Gaps = 35/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L ++ F +F D D+ ALQ L Y +W A
Sbjct: 1 MKLISWNVNGLRACIQKG---FMDFFNEQDADIFALQETKLQPHQIELELPGYHQYWHSA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K+ +P V + ++ ++ +GRVI EFE FY + Y PN+ KE
Sbjct: 58 ERKGYSGTAVFTKQ--KPLSVRYDFDEAEGEHPKEGRVITLEFEQFYFVTAYVPNS--KE 113
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R +W+ + + + + KP+++ GDLNV+ EEID+ +P K N +
Sbjct: 114 ELARLDYRMQWEDAMARHLAKLNETKPVVYTGDLNVAVEEIDLKNP------KTNHF--- 164
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
PGF+ ER++ +L G D +R L+ EK +S+ N K G R
Sbjct: 165 ------NPGFSDQERQKMRDLLSLG-FADTFRTLYPEKVEYSWWSYRFNSRAKNVG--WR 215
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYFIVS+ L +++ + G + GSDHCPV +E+
Sbjct: 216 IDYFIVSQRLMNQVKDSVIYGDIL------GSDHCPVGVEI 250
>gi|345861274|ref|ZP_08813541.1| exodeoxyribonuclease III [Desulfosporosinus sp. OT]
gi|344325629|gb|EGW37140.1| exodeoxyribonuclease III [Desulfosporosinus sp. OT]
Length = 250
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/281 (30%), Positives = 137/281 (48%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPFK--NYQIWWSLA 99
+K ++WN N + VKN F +F + D+ +Q PF+ Y +W+ A
Sbjct: 1 MKLISWNVNGIRACVKNG---FLDFFAKENADIFCIQETKVQEEQIPFRVEGYYQYWNFA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ K +P K+ + + K +++ +GRVI EF +Y++ Y PN+ +
Sbjct: 58 QKKGYSGTAIFSK--MEPNKIVYGMGKE--EHDQEGRVITLEFGEYYVVTVYTPNS--QR 111
Query: 159 EENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R KW++ ++ + KP+I CGDLNV+H EID+ +P
Sbjct: 112 GLARLEYRMKWEEDFLNYLKDLENSKPVIVCGDLNVAHTEIDLKNP------------ST 159
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
N+++ GF+ ER +F ++ G +D +RF + K + WS + R
Sbjct: 160 NRKN---AGFSAEERNKFDELMNNG-FVDTFRFFYPNK-TEAYTWWSYMFNARANNAGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF VS LKD++ I + GSDHCPV LE+
Sbjct: 215 IDYFCVSAGLKDQL------KEAIIYKNVLGSDHCPVGLEI 249
>gi|420446253|ref|ZP_14945154.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-42]
gi|393059442|gb|EJB60322.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-42]
Length = 236
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 84/260 (32%), Positives = 131/260 (50%), Gaps = 33/260 (12%)
Query: 63 FSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKV 119
F +F + D DV +Q + + ++ FK Y +W+ A K Y+G KK +P V
Sbjct: 5 FMDFFNSVDADVFCIQESKMQQEQNTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSV 62
Query: 120 SFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ 179
S+ ++ +++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+
Sbjct: 63 SYGID--IKEHDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKA 118
Query: 180 CS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAI 238
KP+I CGDLNV+H EID+ +P K + GF+ ERK+F +
Sbjct: 119 LELKKPVIVCGDLNVAHNEIDLENP---------------KTNRKNAGFSDEERKKFSEL 163
Query: 239 LKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQG 298
L G ID +R+ + K+ + WS + + RIDYF+ S LK R+
Sbjct: 164 LNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------K 215
Query: 299 HGIELEGFYGSDHCPVSLEL 318
+ + GSDHCPV LEL
Sbjct: 216 DALIYKDILGSDHCPVGLEL 235
>gi|295110263|emb|CBL24216.1| exodeoxyribonuclease III [Ruminococcus obeum A2-162]
Length = 253
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 137/281 (48%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N + + F + + DV LQ + Y +W+ A
Sbjct: 1 MKLISWNVNGIRACITKG---FEDRFKELNADVFCLQETKCQQGQVELELPGYHQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ + Y+GTA+ KK +P V + A ++ +GRVI EFE FY + Y PN+ +
Sbjct: 58 NRRGYSGTAVFTKK--EPLSVVNGIGIEA--HDKEGRVITLEFEEFYFVTVYTPNS--QS 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E + R +W++ ++L+ KP+I CGD+NV+H+EID+ +P
Sbjct: 112 ELRRLEYRMEWERDFLAYLLKLQEKKPVICCGDMNVAHQEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GFT ER F +L+ G +D +R+ + +K+ + WS + + R
Sbjct: 158 -KTNRKNAGFTDEERACFSRMLESG-FVDTFRYFYPDKEGIYSW-WSYRFKAREKNAGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYFIVS LKDR +Q I E GSDHCPV L++
Sbjct: 215 IDYFIVSPSLKDR-----LQDASIHTE-IMGSDHCPVELDI 249
>gi|332654136|ref|ZP_08419880.1| exodeoxyribonuclease III [Ruminococcaceae bacterium D16]
gi|332517222|gb|EGJ46827.1| exodeoxyribonuclease III [Ruminococcaceae bacterium D16]
Length = 252
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 90/283 (31%), Positives = 142/283 (50%), Gaps = 39/283 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPF---KNYQIWWSL 98
+K ++WN N L +K F +F PD LQ +N +W+
Sbjct: 1 MKLISWNVNGLRACLKKG---FLDFYQEQKPDFCCLQETKMEQGQADVDLGENMLEYWNS 57
Query: 99 ADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWK 157
A+ K Y+GTA+ QP V + + K +++ +GR+I E+E FYL+ Y PN+ +
Sbjct: 58 AEKKGYSGTAVFTPH--QPLAVRYGMGKE--EHDHEGRLITLEYEKFYLVCCYTPNS--Q 111
Query: 158 EEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVP 216
E R +W+ ++ ++++ KP+I+CGDLNV+H EID+ +P+ ++N
Sbjct: 112 SELKRLDYRMEWEDDLRAYLMELDKVKPVIYCGDLNVAHREIDLKNPK---TNRMNA--- 165
Query: 217 PNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKR 275
GFT ER++ +L G D +RFL+ D++ +S WS + +
Sbjct: 166 ---------GFTDQEREKMTTLLSSG-FTDTFRFLY--PDLEGVYSWWSYRFQARKKNAG 213
Query: 276 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYFIVS+ L++ I E+ L GSDHCPV LEL
Sbjct: 214 WRIDYFIVSDRLQNAIKRAEI------LTQVEGSDHCPVLLEL 250
>gi|340751024|ref|ZP_08687853.1| exodeoxyribonuclease [Fusobacterium mortiferum ATCC 9817]
gi|229421274|gb|EEO36321.1| exodeoxyribonuclease [Fusobacterium mortiferum ATCC 9817]
Length = 251
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 86/281 (30%), Positives = 140/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L V F ++ D+ LQ L Y +W+ A
Sbjct: 1 MKLISWNVNGLRACVGKG---FLDYFKEQQADIFCLQETKLQEGQIELELDGYHQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K+ +P V + + +++ +GRVI EFE FY++ Y PN+ +E
Sbjct: 58 EKKGYSGTAIFTKE--KPISVHYGI--GIEEHDKEGRVITLEFEKFYMITVYTPNS--QE 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R KW++ + ++L+ K P+I CGDLNV+H+EID+ +P
Sbjct: 112 KLARLDYRMKWEEDFKNYLLELDKKKPVIVCGDLNVAHKEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER++ +L+ G +D++R+ + K D WS + + R
Sbjct: 158 -KTNRKNAGFSDEEREKMTKLLESG-FVDSFRYFYPNK-TDIYSWWSYRFSARAKNAGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+VS+ +K+ M+G I E GSDHCPV L +
Sbjct: 215 IDYFLVSDRIKEN-----MKGAEIHTE-ILGSDHCPVLLNI 249
>gi|373461425|ref|ZP_09553165.1| exodeoxyribonuclease III (xth) [Prevotella maculosa OT 289]
gi|371952383|gb|EHO70222.1| exodeoxyribonuclease III (xth) [Prevotella maculosa OT 289]
Length = 251
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 135/281 (48%), Gaps = 39/281 (13%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLAD 100
KFV+WN N L V +F+ T + D LQ + F Y +W+ AD
Sbjct: 3 KFVSWNVNGLRACVSK---DFAQTFETLNADFFCLQETKMQAGQLDLQFPGYTSFWNYAD 59
Query: 101 SK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEE 159
K Y+GTA+ +K +P V++ + +++ +GRVI E+E FYL+N Y PN ++
Sbjct: 60 KKGYSGTAIYARK--EPLSVAYGIGID--EHDHEGRVITLEYEDFYLVNVYTPNA--QDG 113
Query: 160 ENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPN 218
R W+ Q ++ + KP+I CGD+NV+HEEID+ +P
Sbjct: 114 LRRLDYRMTWEDDFQAYLHRLDARKPVIVCGDMNVAHEEIDLKNP--------------- 158
Query: 219 KEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMR 277
K + GFT ER + +L G D +R L+ E +S WS + + R
Sbjct: 159 KTNHRNAGFTDEERAKMTQLLGNG-FTDTFRNLYPEA---IKYSWWSYRFRAREKNTGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF++S+ L+ R+ + +GSDHCPV ++L
Sbjct: 215 IDYFLISDRLRPRLKEAAIHNE------IFGSDHCPVEVDL 249
>gi|269216697|ref|ZP_06160551.1| exodeoxyribonuclease III [Slackia exigua ATCC 700122]
gi|269129931|gb|EEZ61014.1| exodeoxyribonuclease III [Slackia exigua ATCC 700122]
Length = 264
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 90/296 (30%), Positives = 134/296 (45%), Gaps = 51/296 (17%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
++ ++WN N L VK F+ D DV ALQ L Y WS A
Sbjct: 1 MRLISWNVNGLRAVVKKG---FNEAFAALDADVFALQETKLQEGQIELDLPGYVQNWSYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ ++ +P +V + AL E GR+ EFE F+ ++ Y PN +
Sbjct: 58 EKKGYSGTAVFSRE--EPLQVVHHVGTPALDTE--GRICACEFEKFWFVDVYTPNA--QP 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG--------------KPLIWCGDLNVSHEEIDVSHPE 204
E + R WD +EF KP+I CGD NV+H+EID+ +P
Sbjct: 112 ELARLEHRMAWDAAFREFCKNLEAGVVPEGLGYASAEPKPVIMCGDFNVAHQEIDLKNP- 170
Query: 205 FFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-W 263
+ + G PGF+ ER F ++L G D +R LH D++ +S W
Sbjct: 171 --------------RSNRGNPGFSDEERSSFTSLLDAG-FADTFRMLH--PDLEGAYSWW 213
Query: 264 SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
S + RIDYF+VS+ L+ I + + + GSDHCPV L+++
Sbjct: 214 SYRFNARKNNAGWRIDYFLVSDALRGAIESASI------YDEVMGSDHCPVGLDIA 263
>gi|386748979|ref|YP_006222186.1| exodeoxyribonuclease III [Helicobacter cetorum MIT 00-7128]
gi|384555222|gb|AFI03556.1| exodeoxyribonuclease III [Helicobacter cetorum MIT 00-7128]
Length = 250
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 88/282 (31%), Positives = 137/282 (48%), Gaps = 36/282 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F T+ D D+ +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMNKG---FMDFFTSVDADIFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G K +P VS+ + +++ +GRVI EF+ FYL+N Y PN+ +
Sbjct: 58 LKKGYSGVVTFSKT--KPLNVSYGI--GIEEHDTEGRVITCEFDKFYLVNVYTPNS--QR 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALARLEYRMSWEIEFRKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER++F +L G ID +R + K+ + WS + R R
Sbjct: 158 -KANRKNAGFSDEEREKFSELLNAG-FIDTFRHFYPTKEKAYTW-WSYMQQSRERNIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
IDYF+ S LK I ++ E GSDHCPV LEL+
Sbjct: 215 IDYFLCSNSLKIEIKDAKI------YESILGSDHCPVGLELN 250
>gi|422339748|ref|ZP_16420705.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp.
polymorphum F0401]
gi|355370591|gb|EHG17971.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp.
polymorphum F0401]
Length = 253
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 86/282 (30%), Positives = 139/282 (49%), Gaps = 38/282 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N + +K F ++ + D+ LQ L K Y +W+ A
Sbjct: 1 MKLISWNVNGIRAAIKKG---FLDYFNEQNADIFCLQETKLSEGQLDLELKGYYQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K+ +P VS+ L +++ +GRVI EFE FY++ Y PN+ K+
Sbjct: 58 EKKGYSGTAIFTKQ--EPLSVSYGL--GIEEHDKEGRVITLEFEKFYMVTVYTPNS--KD 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R W+ ++++ K P++ CGDLNV+H+EID+ +P
Sbjct: 112 ELLRLDYRMVWEDEFRKYLKNLEKKKPVVVCGDLNVAHKEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
K + GFT ER +F +L G ID +R+ + +++ +S WS +
Sbjct: 158 -KTNRRNAGFTDEERGKFTELLDSG-FIDTFRYFY--PNLEQVYSWWSYRANARKNNAGW 213
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF+VS+ L+ ++ E+ GSDHCPV L L
Sbjct: 214 RIDYFVVSKGLEKNLVDAEIHSQT------EGSDHCPVVLFL 249
>gi|224543695|ref|ZP_03684234.1| hypothetical protein CATMIT_02905 [Catenibacterium mitsuokai DSM
15897]
gi|224523348|gb|EEF92453.1| exodeoxyribonuclease III [Catenibacterium mitsuokai DSM 15897]
Length = 248
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 90/280 (32%), Positives = 134/280 (47%), Gaps = 36/280 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K+V+WN N + +K F + D D+ ALQ + Y ++ + A
Sbjct: 1 MKYVSWNVNGIRACLKKG---FLESFKSLDADIFALQETKAQKDQIDLDIPGYTLYTNDA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+L + +P VS+ + +Y+ +GRVI EFE +Y + Y PN+ K+
Sbjct: 58 IKKGYSGTAILTR--MKPLSVSYGI--GIEEYDQEGRVITLEFEDYYFVPCYTPNS--KK 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPN 218
E R +W+ + L KP+I CGDLNV+H EID+ +P
Sbjct: 112 ELARIDYRMEWEDAFLAY-LDALNKPVILCGDLNVAHHEIDLKNP--------------- 155
Query: 219 KEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRI 278
+ GF+ ER + +L G ID +R+L+ +K D WS + R RI
Sbjct: 156 SSNHHNAGFSDQERSKMTELLSHG-YIDTFRYLYPDKK-DAYTWWSYMFKSRERNAGWRI 213
Query: 279 DYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
DYFIVSE LK+RI + GSDHCP+ LE+
Sbjct: 214 DYFIVSESLKERI------KESLIYSDILGSDHCPIGLEM 247
>gi|210135690|ref|YP_002302129.1| exodeoxyribonuclease III [Helicobacter pylori P12]
gi|210133658|gb|ACJ08649.1| exodeoxyribonuclease [Helicobacter pylori P12]
Length = 250
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 86/281 (30%), Positives = 137/281 (48%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + D DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P V++ + +++ +GRVI EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVNYGINME--EHDKEGRVITCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER +F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEERGKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKNIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK + + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTCL------KDALIYKDILGSDHCPVGLEL 249
>gi|257870107|ref|ZP_05649760.1| exodeoxyribonuclease [Enterococcus gallinarum EG2]
gi|257804271|gb|EEV33093.1| exodeoxyribonuclease [Enterococcus gallinarum EG2]
Length = 261
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 86/287 (29%), Positives = 135/287 (47%), Gaps = 38/287 (13%)
Query: 38 KKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIW 95
++ +KF++WN N L VK N F TFD D LQ L Y +
Sbjct: 8 RRTNMKFISWNVNGLRAIVKKN---FLEAFETFDADFFCLQETKLQAGQIELDLPGYTQY 64
Query: 96 WSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNN 154
W+ A+ K Y+GTA+ K+ +E+ ++ +GRVI E+ F+L+ Y PN
Sbjct: 65 WNYAEKKGYSGTAIFAKEPALAAHYGIGIEE----HDAEGRVITLEYPEFFLVTCYTPNA 120
Query: 155 GWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNG 213
+ E R W+ + ++ KP+I CGDLNV+H+ ID+ +
Sbjct: 121 --QNELRRLDYRMTWEDAFRAYLTDLKQQKPVILCGDLNVAHQNIDLKNW---------- 168
Query: 214 YVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYR 272
K + GFT ER++F +L G D +R+ + D + +S WS +
Sbjct: 169 -----KTNQKNAGFTPEEREKFSTLLSAG-FTDTFRYFY--PDAEGIYSWWSYRFNARKN 220
Query: 273 GKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
RIDYF+VS++L DR++ ++ + GSDHCPV L+L+
Sbjct: 221 NAGWRIDYFVVSDDLNDRLVDAKIHTEIL------GSDHCPVELQLN 261
>gi|312870577|ref|ZP_07730692.1| exodeoxyribonuclease III [Lactobacillus oris PB013-T2-3]
gi|417885012|ref|ZP_12529173.1| exodeoxyribonuclease III [Lactobacillus oris F0423]
gi|311093892|gb|EFQ52221.1| exodeoxyribonuclease III [Lactobacillus oris PB013-T2-3]
gi|341596968|gb|EGS39554.1| exodeoxyribonuclease III [Lactobacillus oris F0423]
Length = 275
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 90/303 (29%), Positives = 134/303 (44%), Gaps = 56/303 (18%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNF------ITTFDPDVIALQILMRALSSPP------- 88
+KF++WN +S+ + I+ +PD +A+Q + + P
Sbjct: 1 MKFISWNIDSINAALTGTSTRAGETRAVLKKISALEPDAVAIQETKLSKNGPTKKHLQVL 60
Query: 89 ---FKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEF 141
F YQI W A YAGT L + +QP V++ + +GR+I EF
Sbjct: 61 ADLFPGYQIAWRSSVEPARKGYAGTMYLYRDQYQPT-VTYPQIGAPEPMDSEGRIITLEF 119
Query: 142 ETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEE 197
F+L Y PN+G N +R R +WD ++++ Q KP+I GD NV+HEE
Sbjct: 120 HDFFLTEVYTPNSG-----NGLKRLADREQWDDCYRDYLHQLDEQKPVIASGDFNVAHEE 174
Query: 198 IDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDM 257
ID++HP + GFT ER FG +L G D++RFLH E+
Sbjct: 175 IDLAHP---------------ANNHHSAGFTDEERSHFGQLLAAG-FTDSFRFLHPEE-- 216
Query: 258 DCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVS 315
+SW + K RIDY++VS L DR+ + M G DH P+
Sbjct: 217 AGAYSWWAQRVLTSKQNNSGWRIDYWLVSNRLADRVSSSSMIDSGER------RDHTPIM 270
Query: 316 LEL 318
LE+
Sbjct: 271 LEI 273
>gi|402828442|ref|ZP_10877330.1| exodeoxyribonuclease III [Slackia sp. CM382]
gi|402286525|gb|EJU34996.1| exodeoxyribonuclease III [Slackia sp. CM382]
Length = 264
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 90/296 (30%), Positives = 133/296 (44%), Gaps = 51/296 (17%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
++ ++WN N L VK F D DV ALQ L Y WS A
Sbjct: 1 MRLISWNVNGLRAVVKKG---FDEAFAALDADVFALQETKLQEGQIELDLPGYVQNWSYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ ++ +P +V + AL E GR+ EFE F+ ++ Y PN +
Sbjct: 58 EKKGYSGTAVFSRE--EPLQVVHHVGTPALDTE--GRICACEFEKFWFVDVYTPNA--QP 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG--------------KPLIWCGDLNVSHEEIDVSHPE 204
E + R WD +EF KP+I CGD NV+H+EID+ +P
Sbjct: 112 ELARLEHRMAWDAAFREFCKNLEAGVVPEGLGYASAEPKPVIMCGDFNVAHQEIDLKNP- 170
Query: 205 FFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-W 263
+ + G PGF+ ER F ++L G D +R LH D++ +S W
Sbjct: 171 --------------RSNRGSPGFSDEERSSFTSLLDAG-FADTFRMLH--PDLEGAYSWW 213
Query: 264 SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
S + RIDYF+VS+ L+ I + + + GSDHCPV L+++
Sbjct: 214 SYRFNARKNNAGWRIDYFLVSDALRGAIESASI------YDEVMGSDHCPVGLDIA 263
>gi|402301696|ref|ZP_10820957.1| exodeoxyribonuclease [Bacillus alcalophilus ATCC 27647]
gi|401723230|gb|EJS96766.1| exodeoxyribonuclease [Bacillus alcalophilus ATCC 27647]
Length = 250
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 90/281 (32%), Positives = 133/281 (47%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+KFV+WN N + VK F ++ D D A+Q + Y+ +W+ A
Sbjct: 1 MKFVSWNVNGIRACVKKG---FLDYFHQVDADFFAIQETKCQKGQIELQLDGYEQYWNDA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K P V + + + + + +GRVI E+ FYL+ Y PN+ K
Sbjct: 58 ERKGYSGTAIFTKHT--PLSVQYGIGEDLI--DQEGRVIALEYSKFYLVTCYTPNS--KR 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ + R W++ ++ KP+I CGDLNV+H EID+ +
Sbjct: 112 DLSRLPYRLSWEEHFLAYLKNLEEKKPVILCGDLNVAHTEIDLKNA-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + G GFT ER + +L G D++R+L+ E D WS + R R
Sbjct: 158 -KSNHGNSGFTQEERGKMTTLLSSG-FTDSFRYLYPET-TDKYSWWSYMNKVRERNIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYFIVS EL + I E+ + GSDHCPV LEL
Sbjct: 215 IDYFIVSNELTNSIKKAEIHNEIL------GSDHCPVFLEL 249
>gi|383754456|ref|YP_005433359.1| putative exodeoxyribonuclease III [Selenomonas ruminantium subsp.
lactilytica TAM6421]
gi|381366508|dbj|BAL83336.1| putative exodeoxyribonuclease III [Selenomonas ruminantium subsp.
lactilytica TAM6421]
Length = 250
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 89/284 (31%), Positives = 137/284 (48%), Gaps = 42/284 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQIL-----MRALSSPPFKNYQIWW 96
+KF++WN N L +K F D DV LQ L P +K Y W
Sbjct: 1 MKFISWNVNGLRACLKKG---FMESFCKLDADVFCLQETKMQPEQAILDLPGYKQY---W 54
Query: 97 SLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNG 155
+ A+ K Y+GTA+ + +P V++ L +++ +GRVI EF +L+ Y PN+
Sbjct: 55 NSAEKKGYSGTAVFSR--IEPLHVTYGL--GIEEHDHEGRVITLEFPEMFLVTVYTPNS- 109
Query: 156 WKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY 214
K E R +W+ + ++++ KP+I CGDLNV+H+EID+ +P
Sbjct: 110 -KRELERLAYRMEWEDAFRAYLMKLDEQKPVIVCGDLNVAHQEIDLKNP----------- 157
Query: 215 VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGK 274
K + GFT ER +FG +L G ID +R L+ ++ + WS +
Sbjct: 158 ----KTNHHNAGFTDEERGKFGELLDAG-FIDTFRTLYPDRTGIYTW-WSYLRKARDNNA 211
Query: 275 RMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF+ S+ L+++I + +GSDHCPV LEL
Sbjct: 212 GWRIDYFVASKRLQEKIQDATIHNE------IFGSDHCPVGLEL 249
>gi|257413807|ref|ZP_04744296.2| exodeoxyribonuclease III [Roseburia intestinalis L1-82]
gi|257202214|gb|EEV00499.1| exodeoxyribonuclease III [Roseburia intestinalis L1-82]
gi|291538795|emb|CBL11906.1| exodeoxyribonuclease III [Roseburia intestinalis XB6B4]
Length = 256
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 80/284 (28%), Positives = 139/284 (48%), Gaps = 36/284 (12%)
Query: 39 KDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWW 96
++ +K ++WN N L ++ F +F D D+ +Q L P Y +W
Sbjct: 2 ENTMKLISWNVNGLRACIQKG---FLDFFHETDADIFCIQESKLQEGQIDLPLPGYFSYW 58
Query: 97 SLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNG 155
+ A K Y+GTA+ KK +P V++ + +++ +GRVI E+ FY++ Y PN+
Sbjct: 59 NYAKKKGYSGTAIFTKK--EPLNVTYGI--GIEEHDKEGRVITLEYPDFYMVTCYTPNS- 113
Query: 156 WKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY 214
+ E R +W+ + ++ + G KP+I CGDLNV+HEEID+ +P
Sbjct: 114 -QNELARLPYRMQWEDDFRAYLKRLDGSKPVILCGDLNVAHEEIDLKNP----------- 161
Query: 215 VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGK 274
K + GF+ ER++ +L G D +R+ + + + + WS + +
Sbjct: 162 ----KTNRKNAGFSDEEREKMTKLLDAG-FTDTFRYFYPDTEQIYSW-WSYRFRAREKNA 215
Query: 275 RMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYFI S+ + D++ ++ +GSDHCPV L++
Sbjct: 216 GWRIDYFITSKRMNDKLTGAKIH------TDVFGSDHCPVELDI 253
>gi|45358575|ref|NP_988132.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis S2]
gi|44921333|emb|CAF30568.1| exonuclease III [Methanococcus maripaludis S2]
Length = 249
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 83/279 (29%), Positives = 138/279 (49%), Gaps = 37/279 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N + +KN F NF+ PD++ +Q + Y +W+ A
Sbjct: 1 MKMLSWNVNGIRACLKNG---FMNFLERESPDIMCIQETKVQSGQVQLGLDGYFQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K +P V +E + ++ +GRVI EF+ +YL+N Y PN+ +
Sbjct: 58 ERKGYSGTAIFTK--IKPNNVILGMENS--EHNNEGRVITLEFDEYYLVNVYTPNS--QR 111
Query: 159 EENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R+KWD+ ++ + KP+++CGDLNV+H+EID+ +P
Sbjct: 112 GLTRLEYRQKWDEDFLSYIKTLETKKPVVFCGDLNVAHKEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GFT ER F I+ G +D +R + E D +S+ N + R R
Sbjct: 158 -KTNVKNAGFTPEERNGFDNIVNSG-FLDTFREFNNEPDNYSWWSYRFN--ARARNIGWR 213
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
IDYF +S+ L++ + + + GSDHCPV +
Sbjct: 214 IDYFCISKSLRNNLKDAYI------MPEVMGSDHCPVGI 246
>gi|153812982|ref|ZP_01965650.1| hypothetical protein RUMOBE_03389 [Ruminococcus obeum ATCC 29174]
gi|149830929|gb|EDM86019.1| exodeoxyribonuclease III [Ruminococcus obeum ATCC 29174]
Length = 252
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 85/281 (30%), Positives = 136/281 (48%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N + + F + D D+ LQ + Y +W+ A
Sbjct: 1 MKCISWNVNGIRACITKG---FEDRFRELDADIFCLQETKCQQGQVELELPGYHQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ + Y+GTA+ KK K +E+ ++ +GRVI EF+ FY + Y PN+ +
Sbjct: 58 NRRGYSGTAVFTKKEPISVKNGIGIEE----HDKEGRVITLEFKEFYFVTVYTPNS--QS 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E + R +W++ ++L+ KP+I CGDLNV+HEEID+ +P
Sbjct: 112 ELRRLEYRMEWERDFLAYLLKLQESKPVICCGDLNVAHEEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GFT ER F +L+ G ID +R+ + +K+ + WS + + R
Sbjct: 158 -KTNRKNAGFTDEERACFTKVLESG-FIDTFRYFYPDKEGIYSW-WSYRFKAREKNAGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYFI S LK++ +QG I E GSDHCP+ L++
Sbjct: 215 IDYFITSPSLKEK-----LQGAAIHTE-IMGSDHCPIELDI 249
>gi|421145619|ref|ZP_15605476.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp. fusiforme
ATCC 51190]
gi|395487984|gb|EJG08882.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp. fusiforme
ATCC 51190]
Length = 253
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 89/287 (31%), Positives = 142/287 (49%), Gaps = 48/287 (16%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N + +K F ++ + D+ LQ L K Y +W+ A
Sbjct: 1 MKLISWNVNGIRAAIKKG---FLDYFNEQNADIFCLQETKLSAGQLDLELKGYHQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K+ +P VS+ L +++ +GRVI EFE FY++ Y PN+ K+
Sbjct: 58 EKKGYSGTAIFTKQ--EPLTVSYGL--GIEEHDKEGRVITLEFEKFYMVTVYTPNS--KD 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++++ K ++ CGDLNV+HEEID+ +P
Sbjct: 112 KLLRLDYRMTWEDEFRKYLKNLEKKKAVVVCGDLNVAHEEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
K + GFT ER +F +L G ID +R+ + +++ +SW YRG+
Sbjct: 158 -KTNRRNAGFTDEERGKFTELLDSG-FIDTFRYFY--PNLEQVYSW-----WSYRGRARE 208
Query: 277 -----RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF+VS+ L+ ++ E+ IE GSDHCPV L L
Sbjct: 209 NNAGWRIDYFVVSKGLEKNLVDAEIHTQ-IE-----GSDHCPVVLIL 249
>gi|167767320|ref|ZP_02439373.1| hypothetical protein CLOSS21_01839 [Clostridium sp. SS2/1]
gi|429761671|ref|ZP_19294088.1| exodeoxyribonuclease III [Anaerostipes hadrus DSM 3319]
gi|167711295|gb|EDS21874.1| exodeoxyribonuclease III [Clostridium sp. SS2/1]
gi|291559374|emb|CBL38174.1| exodeoxyribonuclease III [butyrate-producing bacterium SSC/2]
gi|429183247|gb|EKY24313.1| exodeoxyribonuclease III [Anaerostipes hadrus DSM 3319]
Length = 250
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 136/281 (48%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+KF++WN N + VK F +F D D+ +Q + Y +W+ A
Sbjct: 1 MKFISWNVNGIRACVKKG---FLDFFNETDADIFCIQESKMQEGQLDLNLPGYHQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GT + K+ +P V + L +++ +GRVI EF+ +Y + Y PN+ +
Sbjct: 58 VKKGYSGTGIFTKE--EPISVFYGL--GIEEHDQEGRVITLEFKDYYFITVYTPNS--QS 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R KW++ ++ + KP+I+CGDLNV+ EEID+ +P
Sbjct: 112 ELARLSYRMKWEEDFLAYLKKLEEKKPVIFCGDLNVAVEEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GFT ER++ IL G ID +R+L+ ++ + WS + R
Sbjct: 158 -KTNRKNAGFTDEEREKMRTILSNG-FIDTFRYLYPDQTGIYSW-WSYRFNARKNNAGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYFIVSE LKDRI ++ L GSDHCP+ L+
Sbjct: 215 IDYFIVSECLKDRISDAKI------LTDVMGSDHCPIELDF 249
>gi|156543084|ref|XP_001605156.1| PREDICTED: recombination repair protein 1-like isoform 1 [Nasonia
vitripennis]
gi|345493726|ref|XP_003427141.1| PREDICTED: recombination repair protein 1-like isoform 2 [Nasonia
vitripennis]
Length = 391
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 142/281 (50%), Gaps = 43/281 (15%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPP----FKNYQIWWS 97
+K TWN + + +K N ++ D D+IALQ P K Y ++
Sbjct: 140 IKICTWNVSGIRAVLKKNG---MTYLEREDADIIALQETKCETKKIPDEVKLKGYTRYF- 195
Query: 98 LADSK---YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNN 154
DSK Y G AL KK +P +S L++ +++ +GR+I AE+E FYL+N Y PN
Sbjct: 196 -LDSKKAGYCGMALYSKK--EPIDISMGLDE---EFDDEGRLITAEYEHFYLVNVYVPNA 249
Query: 155 GWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNG 213
G K + +R KW++ ++ + KP+I CGD+NV+H+EID+ +P
Sbjct: 250 GNKLV--TLPKRLKWNEAFKKHIQDLDKKKPVIICGDMNVAHQEIDLKNP---------- 297
Query: 214 YVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRG 273
K + GFT ER L+ G +D +R L+ +K D W+ + +
Sbjct: 298 -----KTNTKNAGFTKEERDGMTDFLQAG-FVDTFRLLYPDK-TDAYTFWAYFNNARSKN 350
Query: 274 KRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPV 314
R+DY+IVSE++K+++ C++ + + +GSDHCPV
Sbjct: 351 IGWRLDYYIVSEKIKNKV--CDV----VNRDQVFGSDHCPV 385
>gi|325970995|ref|YP_004247186.1| exodeoxyribonuclease III Xth [Sphaerochaeta globus str. Buddy]
gi|324026233|gb|ADY12992.1| exodeoxyribonuclease III Xth [Sphaerochaeta globus str. Buddy]
Length = 250
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 89/282 (31%), Positives = 135/282 (47%), Gaps = 37/282 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K V+WN N L K F ++ + D+ LQ L S + Y +WS A
Sbjct: 1 MKLVSWNVNGLRAIQKKG---FDEYLKQSNADIFCLQETKLQEDQISLVTEGYHTYWSFA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTAL K+ +P V + + +GR + AEFE FY++ Y PN+ +E
Sbjct: 58 EKKGYSGTALFSKQ--EPVSVQRGI---GHPLDNEGRTVTAEFEQFYVVCCYTPNS--QE 110
Query: 159 EENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R WD+ + +V S KP+I CGDLNV+H+ ID+ HP
Sbjct: 111 ALARLDTRMDWDEAFRSYVCSLASMKPVIICGDLNVAHQSIDLRHP-------------- 156
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + G++I ER +F ++L G ID +R+L+ ++ + WS + R
Sbjct: 157 -KANERNAGYSIEERNQFTSLLDAG-FIDTFRYLYPNREGIYSW-WSYRFKARENNAGWR 213
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
IDY++VSEEL+ I+ + GSDH PV L L+
Sbjct: 214 IDYWLVSEELRQSILDSTIDTET------QGSDHAPVILYLN 249
>gi|169823955|ref|YP_001691566.1| exodeoxyribonuclease III [Finegoldia magna ATCC 29328]
gi|417925665|ref|ZP_12569084.1| exodeoxyribonuclease III [Finegoldia magna SY403409CC001050417]
gi|167830760|dbj|BAG07676.1| exodeoxyribonuclease III [Finegoldia magna ATCC 29328]
gi|341591291|gb|EGS34499.1| exodeoxyribonuclease III [Finegoldia magna SY403409CC001050417]
Length = 253
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 84/284 (29%), Positives = 141/284 (49%), Gaps = 38/284 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ-ILMRALSSPPFKNYQIW----W 96
+K ++WN N +K F + + + D+ LQ I M+ N + + +
Sbjct: 1 MKLISWNVNGYRAVMKKG---FMDAFNSLNADIFCLQEIKMKENQMTDEMNIEGYHRYSY 57
Query: 97 SLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 156
S + Y+GT + K +P VS+ + +++ +GRVI E+E F+L+N Y PN+
Sbjct: 58 SANKAGYSGTLVYTK--VEPIGVSYGIGID--EHDTEGRVITCEYEDFFLVNVYTPNSKQ 113
Query: 157 KEEENSFQRRRKWDKRIQEFV-LQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 215
K E + R W+ ++ + KP+I CGDLNV+H EID+ +P+
Sbjct: 114 KLERLDY--RMVWEDEFHNYLNILRDRKPVIVCGDLNVAHNEIDLKNPQ----------- 160
Query: 216 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 275
N+ GFT ER + +L +G ID +R+ + +K + + WS + R
Sbjct: 161 -SNRR---SAGFTDEERNKMSLLLNDG-YIDTFRYFYPDKTDEYSY-WSYFAKARERNAG 214
Query: 276 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
RIDYF+VS++LKD ++ ++ + GSDHCPV LE++
Sbjct: 215 WRIDYFLVSDDLKDNLVDAKIH------QSIMGSDHCPVELEIN 252
>gi|317497391|ref|ZP_07955713.1| exodeoxyribonuclease III [Lachnospiraceae bacterium 5_1_63FAA]
gi|316895311|gb|EFV17471.1| exodeoxyribonuclease III [Lachnospiraceae bacterium 5_1_63FAA]
Length = 250
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 136/281 (48%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+KF++WN N + VK F +F D D+ +Q + Y +W+ A
Sbjct: 1 MKFISWNVNGIRACVKKG---FLDFFNETDADIFCIQESKMQEGQLDLNLPEYHQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GT + K+ +P V + L +++ +GRVI EF+ +Y + Y PN+ +
Sbjct: 58 VKKGYSGTGIFTKE--EPISVFYGL--GIEEHDQEGRVITLEFKDYYFITVYTPNS--QS 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R KW++ ++ + KP+I+CGDLNV+ EEID+ +P
Sbjct: 112 ELARLSYRMKWEEDFLAYLKKLEEKKPVIFCGDLNVAVEEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GFT ER++ IL G ID +R+L+ ++ + WS + R
Sbjct: 158 -KTNRKNAGFTDEEREKMRTILNNG-FIDTFRYLYPDQTGIYSW-WSYRFNARKNNAGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYFIVSE LKDRI ++ L GSDHCP+ L+
Sbjct: 215 IDYFIVSECLKDRISDAKI------LTDVMGSDHCPIELDF 249
>gi|421053769|ref|ZP_15516741.1| exodeoxyribonuclease III Xth [Pelosinus fermentans B4]
gi|421061178|ref|ZP_15523542.1| exodeoxyribonuclease III Xth [Pelosinus fermentans B3]
gi|421066246|ref|ZP_15527876.1| exodeoxyribonuclease III Xth [Pelosinus fermentans A12]
gi|421070869|ref|ZP_15531997.1| exodeoxyribonuclease III Xth [Pelosinus fermentans A11]
gi|392441646|gb|EIW19276.1| exodeoxyribonuclease III Xth [Pelosinus fermentans B4]
gi|392447774|gb|EIW24993.1| exodeoxyribonuclease III Xth [Pelosinus fermentans A11]
gi|392450902|gb|EIW27905.1| exodeoxyribonuclease III Xth [Pelosinus fermentans B3]
gi|392457143|gb|EIW33851.1| exodeoxyribonuclease III Xth [Pelosinus fermentans A12]
Length = 250
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 84/281 (29%), Positives = 136/281 (48%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F T D D+ +Q + + Y+ +W+ A
Sbjct: 1 MKLISWNVNGLRACLSKG---FEDFFNTADADIFCIQETKMHPDQAEIGLIGYEKYWNSA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ + P V++ L +++ +GR+I EFE F+L+N Y PN+ K
Sbjct: 58 VKKGYSGTAVFTR--IAPLSVTYGLNIE--EHDQEGRIITLEFEDFFLVNVYTPNS--KR 111
Query: 159 EENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R +W+ + ++ KP+I CGD+NV+H+EID+ +P
Sbjct: 112 ELLRLDYRMRWEDEFRTYLTALDQSKPVIICGDINVAHQEIDIKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GFT ER + A+L+ G D +R ++ +K +D WS + R R
Sbjct: 158 -KTNRRNAGFTDEERDKMTALLEAG-FTDTFRHIYPDK-IDAYTWWSYMMNARARNIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+VS L++ I + GSDHCP+ LE+
Sbjct: 215 IDYFLVSNALREAIKEATI------YPDVMGSDHCPIGLEI 249
>gi|320354727|ref|YP_004196066.1| exodeoxyribonuclease III Xth [Desulfobulbus propionicus DSM 2032]
gi|320123229|gb|ADW18775.1| exodeoxyribonuclease III Xth [Desulfobulbus propionicus DSM 2032]
Length = 481
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 89/290 (30%), Positives = 145/290 (50%), Gaps = 50/290 (17%)
Query: 39 KDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQIL----------MRALSSPP 88
+D K ++WN N L KN F + + D D++ALQ + +R +S
Sbjct: 227 RDERKLISWNVNGLRAVAKNG---FLDVLHELDADILALQEIKAHPDQLDDQLRNVSG-- 281
Query: 89 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 147
YQ +W A K YAGTA+ K P +V + +E+ +++ +GRV+ E+ FYL+
Sbjct: 282 ---YQSFWHSAKKKGYAGTAVFSK--IPPLRVLYGMEQP--QFDDEGRVLTLEYPDFYLI 334
Query: 148 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFF 206
NTY+PN + E ++++++ + ++ + S K ++ CGDLNV+H+EID+++P
Sbjct: 335 NTYSPNA--QPELKRLAFKQEFNRTLLAYMDRLRSEKTVVLCGDLNVAHKEIDLANP--- 389
Query: 207 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 266
K + PGF+ ER ++ G +D +R ++E +S+ N
Sbjct: 390 ------------KANVKNPGFSEQERAWMDELIAAG-YVDTFRQFNQEAGQYTWWSYRFN 436
Query: 267 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
K G RIDYFIV +DR++ + G GSDHCPVSL
Sbjct: 437 ARAKNIG--WRIDYFIVDGSSRDRVLEAAIHGE------ITGSDHCPVSL 478
>gi|332882010|ref|ZP_08449645.1| exodeoxyribonuclease III [Capnocytophaga sp. oral taxon 329 str.
F0087]
gi|357048168|ref|ZP_09109722.1| exodeoxyribonuclease III [Paraprevotella clara YIT 11840]
gi|332679934|gb|EGJ52896.1| exodeoxyribonuclease III [Capnocytophaga sp. oral taxon 329 str.
F0087]
gi|355528751|gb|EHG98229.1| exodeoxyribonuclease III [Paraprevotella clara YIT 11840]
Length = 250
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 85/281 (30%), Positives = 140/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+KF++WN N L + F D D LQ + F+ Y+ +W+ A
Sbjct: 1 MKFISWNVNGLRACCEKG---FKESFAALDADFFCLQETKMQEGQLDLEFEGYRSYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ + P V++ L +++ +GRVI E F+L+ Y PN+ ++
Sbjct: 58 EKKGYSGTAIFSRHA--PLNVTYGLGLE--EHDKEGRVITLEMPDFFLVTVYTPNS--QD 111
Query: 159 EENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R +W++ + ++LQ + KP+I CGDLNV+H EID+ +P
Sbjct: 112 GLKRLDYRMQWEEAFRAYLLQLDTRKPVIVCGDLNVAHREIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GFT ER++FG +L G D +RF + +++ + WS + + R
Sbjct: 158 -KSNRKNAGFTDEEREKFGILLDSG-FTDTFRFFYPDREGIYSW-WSYRFKAREKNAGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+VS+ L+ +++ I E F GSDHCPV ++L
Sbjct: 215 IDYFLVSKRLE-----AQLKSATIHTEIF-GSDHCPVEVDL 249
>gi|402846244|ref|ZP_10894559.1| exodeoxyribonuclease III [Porphyromonas sp. oral taxon 279 str.
F0450]
gi|402268322|gb|EJU17703.1| exodeoxyribonuclease III [Porphyromonas sp. oral taxon 279 str.
F0450]
Length = 250
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 134/281 (47%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+KF++WN N L +P+ I D D + LQ + +Y +W+ A
Sbjct: 1 MKFISWNVNGLRAVFTKGFPDI---IKELDADFVCLQETKMQAGQLDADLPSYISYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ + +P VS+ + +++ +GRVI E+ F+L+ Y PN+ ++
Sbjct: 58 VKKGYSGTAIYTRH--EPLSVSYGI--GIEEHDQEGRVITLEYPEFFLVTVYTPNS--QD 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ + ++ K P+I CGDLNV+H+EID+ +P
Sbjct: 112 DLRRLDYRMTWEDAFRSYLKGLDAKKPVIICGDLNVAHKEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GFT ER + +L G ID +R+ + ++ D WS + R R
Sbjct: 158 -KSNRRNAGFTDEERGKLQELLDAG-FIDTFRYFYPDQ-ADIYSWWSYRFKARERNSGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ SE L R +QG I E YGSDHCPV L L
Sbjct: 215 IDYFVASERLAPR-----LQGAAIHTE-IYGSDHCPVELIL 249
>gi|357050363|ref|ZP_09111563.1| exodeoxyribonuclease [Enterococcus saccharolyticus 30_1]
gi|355381448|gb|EHG28572.1| exodeoxyribonuclease [Enterococcus saccharolyticus 30_1]
Length = 250
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 86/283 (30%), Positives = 133/283 (46%), Gaps = 38/283 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+KF++WN N L VK N F TFD D LQ L Y +W+ A
Sbjct: 1 MKFISWNVNGLRAIVKKN---FLEAFETFDADFFCLQETKLQAGQIELDLPGYTQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K+ +E+ ++ +GRVI E+ F+L+ Y PN +
Sbjct: 58 EKKGYSGTAIFAKEPALAAHYGIGIEE----HDAEGRVITLEYPEFFLVTCYTPNA--QN 111
Query: 159 EENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R W+ + ++ KP+I CGDLNV+H+ ID+ +
Sbjct: 112 ELRRLDYRMTWEDAFRAYLTDLKQQKPVILCGDLNVAHQNIDLKNW-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
K + GFT ER++F +L G D +R+ + D + +S WS +
Sbjct: 158 -KTNQKNAGFTPEEREKFSTLLSAG-FTDTFRYFY--PDAEGIYSWWSYRFNARKNNAGW 213
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
RIDYF+VS++L DR++ ++ + GSDHCPV L+L+
Sbjct: 214 RIDYFVVSDDLNDRLVDAKIHTEIL------GSDHCPVELQLN 250
>gi|420469789|ref|ZP_14968500.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-11]
gi|393086835|gb|EJB87505.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-11]
Length = 250
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 85/281 (30%), Positives = 138/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F + + D+ +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVNADIFCIQESKMQQEQNTFEFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G KK +P VS+ + +++ +GRVI EFE+FYL+N Y PN+ ++
Sbjct: 58 IKKGYSGVVTFTKK--EPLSVSYGINME--EHDKEGRVITCEFESFYLVNVYTPNS--QQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER++F +L G ID +R+ + K+ + WS + + R
Sbjct: 158 -KTNRKNAGFSDEEREKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKDIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S LK + + + GSDHCPV LEL
Sbjct: 215 IDYFLCSNPLKTCL------KDALIYKDILGSDHCPVGLEL 249
>gi|339446107|ref|YP_004712111.1| hypothetical protein EGYY_27130 [Eggerthella sp. YY7918]
gi|338905859|dbj|BAK45710.1| hypothetical protein EGYY_27130 [Eggerthella sp. YY7918]
Length = 285
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 93/319 (29%), Positives = 142/319 (44%), Gaps = 78/319 (24%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
++F++WN N L + F + + D D++ALQ L ++ Y+ +WS A
Sbjct: 1 MRFISWNVNGLRAVLNKG---FEDIVCEIDADIVALQETKLQEGQATLDLPQYREYWSYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ K+ QP +V L L E GR++ EF F+ ++ Y PN +
Sbjct: 58 QKKGYSGTAVFCKE--QPLQVLHGLGSDYLDAE--GRIVALEFPGFWFVDVYTPNA--QN 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG------------------------------------ 182
E R +WD ++F C G
Sbjct: 112 ELARIAHRMQWDDAFRDF---CKGLEEGVLPAGVPVQRPAPGEGHVTISELPLTQPGEST 168
Query: 183 --KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 240
KP++ CGD NV+H+EID+ +P PN+ G+ GF+ ER +F +L
Sbjct: 169 DPKPVVMCGDFNVAHQEIDLKNPG------------PNR---GKAGFSDEERGKFTDLLD 213
Query: 241 EGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGH 299
G +D++R LH D+ +S WS + RIDYF+VSE L +I + +
Sbjct: 214 AG-FVDSFRHLH--PDVTGAYSWWSYRFKARQTNAGWRIDYFLVSEALAPKIESACI--- 267
Query: 300 GIELEGFYGSDHCPVSLEL 318
+ YGSDHCPV +EL
Sbjct: 268 ---YDEVYGSDHCPVGIEL 283
>gi|420491640|ref|ZP_14990218.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-13]
gi|393104853|gb|EJC05407.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-13]
Length = 236
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 83/260 (31%), Positives = 131/260 (50%), Gaps = 33/260 (12%)
Query: 63 FSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKV 119
F +F + D DV +Q + + ++ FK Y +W+ A K Y+G KK +P V
Sbjct: 5 FMDFFNSVDADVFCIQESKMQQEQNTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSV 62
Query: 120 SFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ 179
S+ ++ +++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+
Sbjct: 63 SYGIDME--EHDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKA 118
Query: 180 CS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAI 238
KP+I CGDLNV+H EID+ +P K + GF+ ER++F +
Sbjct: 119 LELKKPVIVCGDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNEL 163
Query: 239 LKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQG 298
L G ID +R+ + K+ + WS + + RIDYF+ S LK R+
Sbjct: 164 LNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------K 215
Query: 299 HGIELEGFYGSDHCPVSLEL 318
+ + GSDHCPV LEL
Sbjct: 216 DALIYKDILGSDHCPVGLEL 235
>gi|409045646|gb|EKM55126.1| hypothetical protein PHACADRAFT_120160 [Phanerochaete carnosa
HHB-10118-sp]
Length = 347
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 89/295 (30%), Positives = 144/295 (48%), Gaps = 41/295 (13%)
Query: 38 KKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIAL-QILMRALSSPPF--KNY-Q 93
K D ++ TWN L K F ++ D DV+ L + + + P K Y
Sbjct: 76 KADSIRIATWNICGLAASSKKG---FKYYVEAEDADVLILTETKVNDSPADPLLTKRYPH 132
Query: 94 IWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAP 152
+WS++ K Y+GTA+L K +P V ++L GR++ EFE Y++ TY
Sbjct: 133 RYWSISAKKTYSGTAILCK--VKPLSVDYTLPGHPDPEHVRGRILTLEFENVYVVGTYVV 190
Query: 153 NNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKL 211
N G + +R W+K ++ K P+IW GDLNV+ E+D+++P
Sbjct: 191 NAG--TGLKTLPEKRTWNKHFHAYIHSLDAKKPVIWTGDLNVAPTELDLANP-------- 240
Query: 212 NGYVPPNKEDWGQ-PGFTIAERKRFGAIL---KEG--RLIDAYRFLHKEKDMDCGFSWSG 265
K +W + PG+T E F +L +EG ++ID +R LH + FS+
Sbjct: 241 -------KPNWNKTPGYTEDETSAFKRVLGPEEEGQKKMIDVWRHLHPKLRHYTYFSYRQ 293
Query: 266 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 320
N + +G R+D+F+VSE L +++ CE++ E + SDHCPV+LE+ +
Sbjct: 294 N--CRSKGVGWRLDHFVVSERLLEKVDMCEIRS-----EIYGASDHCPVTLEIGK 341
>gi|373501432|ref|ZP_09591789.1| exodeoxyribonuclease [Prevotella micans F0438]
gi|371949088|gb|EHO66962.1| exodeoxyribonuclease [Prevotella micans F0438]
Length = 250
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 88/285 (30%), Positives = 140/285 (49%), Gaps = 43/285 (15%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+KF++WN N L V F TF D LQ + F Y+ +W+ A
Sbjct: 1 MKFISWNVNGLRAVVGKG---FVESFETFGADFFCLQETKMQAGQLDISFPGYESYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K ++P V++ + +++ +GR+I E E F+L+ Y PN+ ++
Sbjct: 58 EKKGYSGTAIFTK--YKPLSVTYGMNID--EHDHEGRIITLEMEQFFLVTVYTPNS--QD 111
Query: 159 EENSFQRRRKWDKRIQEFV--LQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVP 216
R +W+ ++ L C KP+I CGD+NV+HEEID+ +P+
Sbjct: 112 GLRRLDYRMQWESDFLAYLTSLDCR-KPVIVCGDMNVAHEEIDLKNPQ------------ 158
Query: 217 PNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM 276
N+ + GFT ER++ +L G +D +R LH E+ +SW K R K +
Sbjct: 159 NNRRN---AGFTDEERQKMTTLLASG-FVDTFRTLHPEEQ---KYSWWSYRF-KAREKNV 210
Query: 277 --RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
RIDYF++SE L +++ + GSDHCPV L L+
Sbjct: 211 GWRIDYFLISERLVPQLVEATIHAE------IMGSDHCPVELVLN 249
>gi|392531481|ref|ZP_10278618.1| exodeoxyribonuclease III [Carnobacterium maltaromaticum ATCC 35586]
Length = 251
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 86/283 (30%), Positives = 137/283 (48%), Gaps = 38/283 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPFK--NYQIWWSLA 99
+K ++WN N L VK F + D D LQ F+ Y +W+ A
Sbjct: 1 MKLISWNVNGLRAVVKKG---FIDIFNQLDADFFCLQETKLQAGQIDFELPGYHQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K +P +V + L K +++ +GRVI + +Y++ Y PN+ +
Sbjct: 58 EKKGYSGTAIFTKH--EPDEVFYGLGKE--EHDQEGRVITLSYPDYYVVTCYTPNS--QN 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R W++ ++ Q KP+I CGDLNV+HE ID+ +
Sbjct: 112 ELKRLNYRMTWEEDFLAYLNQLDAEKPVIVCGDLNVAHENIDIKNW-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
K + GFT ER +F L+ G ID +R+ + E ++ +S WS +
Sbjct: 158 -KTNRKNAGFTDEERGKFTEFLENG-YIDTFRYFYPE--LEGAYSWWSYRFNARANNAGW 213
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
RIDYFIVSE L++++++ + L GSDHCPV L+++
Sbjct: 214 RIDYFIVSERLQEKLVSAAI------LNEVVGSDHCPVELQIN 250
>gi|335047397|ref|ZP_08540418.1| exodeoxyribonuclease III [Parvimonas sp. oral taxon 110 str. F0139]
gi|333761205|gb|EGL38760.1| exodeoxyribonuclease III [Parvimonas sp. oral taxon 110 str. F0139]
Length = 250
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 81/281 (28%), Positives = 144/281 (51%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPFK--NYQIWWSLA 99
++FV+WN N L +K + ++ N I + D LQ + + + Y+ +++ A
Sbjct: 1 MRFVSWNVNGLRACIKKGFLDYFNEI---NADFFCLQEIKMSEGQLDLELEGYETYYNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ K + P V + + +++ +GR+I E+E F+L+ Y PN+ K+
Sbjct: 58 QRKGYSGTAIFTK--YTPLSVKYGM--GIEEHDNEGRLITLEYEDFFLVTCYTPNS--KQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R W+ + ++L+ + K +I CGDLNV+H+EID+ +P
Sbjct: 112 ELLRLDYRMVWEDAFRNYLLELNKTKSVIVCGDLNVAHKEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GFT ER++ +L G D +R+ + +K+ + + WS + R R
Sbjct: 158 -KTNRKNAGFTDQEREKMSILLDSG-FTDTFRYFYPDKENEYSW-WSYFGKSRERNTGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S+++ DR++ ++ + GSDHCPV LE+
Sbjct: 215 IDYFLTSKDMDDRLVDAQIH------QRILGSDHCPVYLEI 249
>gi|225420139|ref|ZP_03762442.1| hypothetical protein CLOSTASPAR_06482 [Clostridium asparagiforme
DSM 15981]
gi|225041196|gb|EEG51442.1| hypothetical protein CLOSTASPAR_06482 [Clostridium asparagiforme
DSM 15981]
Length = 251
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 84/278 (30%), Positives = 136/278 (48%), Gaps = 36/278 (12%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLAD 100
K ++WN N L V F ++ D DV LQ L Y +W+ A
Sbjct: 3 KLISWNVNGLRACVGKG---FLDYFKEADADVFCLQETKLQEGQIDLDLPGYHQYWNYAQ 59
Query: 101 SK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEE 159
K Y+GTA+ K+ +P V + L +++ +GRVI AEF+ ++++ Y PN+ ++
Sbjct: 60 KKGYSGTAMFTKE--EPVSVRYGL--GIEEHDMEGRVIAAEFQEYFVVTCYTPNS--QDG 113
Query: 160 ENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPN 218
R +W+ ++ + KP+I+CGDLNV+H+EID+ +P
Sbjct: 114 LARLDYRMEWENAFLAYLKKLEEEKPVIFCGDLNVAHKEIDLKNP--------------- 158
Query: 219 KEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRI 278
K + GFT ER +F +L G ID +R+ + +++ + WS + + RI
Sbjct: 159 KSNRKNAGFTDEERGKFTDLLGAG-FIDTFRYFYPDREGIYSW-WSYRFSARAKNAGWRI 216
Query: 279 DYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
DYF SE LKDR+++ ++ + GSDHCPV L
Sbjct: 217 DYFCASESLKDRLVSADIHTEVM------GSDHCPVEL 248
>gi|330996654|ref|ZP_08320532.1| exodeoxyribonuclease III [Paraprevotella xylaniphila YIT 11841]
gi|329572726|gb|EGG54359.1| exodeoxyribonuclease III [Paraprevotella xylaniphila YIT 11841]
Length = 250
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 85/281 (30%), Positives = 140/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+KF++WN N L + F D D LQ + F+ Y+ +W+ A
Sbjct: 1 MKFISWNVNGLRACCEKG---FKESFAALDADFFCLQETKMQEGQLDLEFEGYRSYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ + P V++ L +++ +GRVI E F+L+ Y PN+ ++
Sbjct: 58 EKKGYSGTAIFSRHA--PLNVTYGLGLE--EHDREGRVITLEMPDFFLVTVYTPNS--QD 111
Query: 159 EENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R +W++ + ++LQ + KP+I CGDLNV+H EID+ +P
Sbjct: 112 GLKRLDYRMQWEEAFRAYLLQLDTRKPVIVCGDLNVAHREIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GFT ER++FG +L G D +RF + +++ + WS + + R
Sbjct: 158 -KSNRKNAGFTDEEREKFGILLDSG-FTDTFRFFYPDREGIYSW-WSYRFKAREKNAGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+VS+ L+ +++ I E F GSDHCPV ++L
Sbjct: 215 IDYFLVSKRLE-----AQLKSATIHTEIF-GSDHCPVEVDL 249
>gi|350410618|ref|XP_003489091.1| PREDICTED: recombination repair protein 1-like [Bombus impatiens]
Length = 334
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 88/284 (30%), Positives = 146/284 (51%), Gaps = 38/284 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPFK---NYQIWWSL 98
LK +WN + + +K N E+ + D D+IALQ + P + N ++ L
Sbjct: 82 LKISSWNVSGIRAVIKKNGMEY---MLKEDADIIALQETKCDKNKLPEEVKLNGYHYYFL 138
Query: 99 ADSK--YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 156
K Y G AL K+ +P + + L+ ++++ +GR+I AE+ FYL+N Y PN G
Sbjct: 139 ESKKPGYCGVALYTKE--KPIDIKYGLDN--VEFDSEGRLITAEYSNFYLVNVYVPNAGQ 194
Query: 157 KEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 215
K + +R KW++ + +V KP+I CGD+NV+H++ID+ +P+
Sbjct: 195 KLI--TLPKRLKWNEAFKAYVKNLDEKKPVIICGDMNVAHQKIDLKNPD----------- 241
Query: 216 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 275
NK++ GFT ER L G +D +R L+ +K+ F WS + +
Sbjct: 242 -TNKKN---AGFTQEERSGMTDFLDAG-FVDTFRALYPDKEGAYTF-WSYFANARSKNIG 295
Query: 276 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
R+DYF+VSE++KD + C+ + + YGSDHCP+ L ++
Sbjct: 296 WRLDYFLVSEQIKDNV--CD----NVIRDEVYGSDHCPIVLYIN 333
>gi|288929660|ref|ZP_06423504.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 317 str. F0108]
gi|288329165|gb|EFC67752.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 317 str. F0108]
Length = 249
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 87/282 (30%), Positives = 134/282 (47%), Gaps = 39/282 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+KF++WN N L V +F N D D LQ + F Y +W+ A
Sbjct: 1 MKFISWNVNGLRAVVG---KDFENTFKALDADFFCLQETKMQAGQLDLQFDGYDSFWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
D K Y+GTA+ + +P VS+ + +++ +GRVI E TF+L+ Y PN+ +E
Sbjct: 58 DKKGYSGTAIYTRH--KPLNVSYGIGID--QHDHEGRVITLEMPTFFLVTVYTPNS--QE 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R +W+ Q ++ KP+I CGD+NV+H+EID+ +P
Sbjct: 112 ELRRLDYRMQWEDDFQAYLHNLDKCKPVIVCGDMNVAHQEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
K + GFT ER++ +L G D +R+ + E + +S WS + R
Sbjct: 158 -KTNRRNAGFTDEERQKMTQLLDAG-FTDTFRWKYPE---EVTYSWWSYRFKARERNTGW 212
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF+VS L+ ++ ++ GSDHCPV L L
Sbjct: 213 RIDYFLVSNRLQAEVLDAKIH------TDILGSDHCPVELLL 248
>gi|432328166|ref|YP_007246310.1| exodeoxyribonuclease III [Aciduliprofundum sp. MAR08-339]
gi|432134875|gb|AGB04144.1| exodeoxyribonuclease III [Aciduliprofundum sp. MAR08-339]
Length = 257
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 84/284 (29%), Positives = 145/284 (51%), Gaps = 40/284 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPP-----FKNYQIWW 96
L ++WN N + V+N F F+ ++PD++ALQ + P ++ Y+ ++
Sbjct: 5 LLLMSWNVNGIRAAVRNG---FLKFLEKYNPDILALQEIKAREDDIPLEVRYYEGYRKFF 61
Query: 97 SLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNG 155
+ A K YAGTAL K +P+ VSF + +++ +GRVI AE+E FYL+N Y PN+
Sbjct: 62 NPARRKGYAGTALFTK--IEPESVSFGIGDE--RFDSEGRVITAEYERFYLVNAYFPNS- 116
Query: 156 WKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY 214
+ + ++D++I ++ + KP++ CGD NV+H+EID+++P
Sbjct: 117 -QHGLTRLDFKIEFDRKIHAYLNELRRSKPVVLCGDFNVAHKEIDLANP----------- 164
Query: 215 VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGK 274
K++ GFT ER L +G +D +R KE +++ N + R
Sbjct: 165 ----KQNEKNAGFTPEERAWMDEFLNDG-YVDTFRMFTKEGGHYTWWTYRFN--ARARNI 217
Query: 275 RMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
R+DYF+VS++L + + + YGSDH P+++ L
Sbjct: 218 GWRVDYFVVSKDLVPHVKKSWI------MSDVYGSDHAPIAMIL 255
>gi|266623165|ref|ZP_06116100.1| exodeoxyribonuclease III [Clostridium hathewayi DSM 13479]
gi|288865076|gb|EFC97374.1| exodeoxyribonuclease III [Clostridium hathewayi DSM 13479]
Length = 251
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 84/278 (30%), Positives = 136/278 (48%), Gaps = 36/278 (12%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLAD 100
K ++WN N L V F ++ D D+ +Q L Y +W+ A+
Sbjct: 3 KLISWNVNGLRACVGKG---FLDYFKEVDADIFCIQESKLSEGQIELELSGYHQYWNYAE 59
Query: 101 SK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEE 159
K Y+GTA+ K+ +P V++ + +++ +GRVI AEF +Y++ Y PN+ K+
Sbjct: 60 KKGYSGTAMFTKE--EPLSVAYGI--GIEEHDHEGRVITAEFSDYYVVTCYTPNS--KDG 113
Query: 160 ENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPN 218
R W+ ++ KP+I+CGDLNV+H+EID+ +P
Sbjct: 114 LARLPYRMVWEDAFLRYLKGLEEKKPVIFCGDLNVAHKEIDLKNP--------------- 158
Query: 219 KEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRI 278
K + GFT ER +F +L G ID +R+ + +++ + WS + + RI
Sbjct: 159 KTNRKNAGFTDEERGKFTDLLDAG-FIDTFRWFYPDREEIYSW-WSYRFSARSKNAGWRI 216
Query: 279 DYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
DYF VSE LKDR+++ ++ + GSDHCPV L
Sbjct: 217 DYFCVSEALKDRLVSADIHTEVL------GSDHCPVEL 248
>gi|150017217|ref|YP_001309471.1| exodeoxyribonuclease III Xth [Clostridium beijerinckii NCIMB 8052]
gi|149903682|gb|ABR34515.1| exodeoxyribonuclease III Xth [Clostridium beijerinckii NCIMB 8052]
Length = 254
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 89/282 (31%), Positives = 140/282 (49%), Gaps = 38/282 (13%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLAD 100
K ++WN N L VK F + D D+ +Q L Y +W+ A+
Sbjct: 5 KLISWNVNGLRACVKKG---FLEYFKEIDADIFCIQESKLQEGQIDLELDGYTSYWNYAE 61
Query: 101 SK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEE 159
K Y+GTA+ K+ K +E+ ++ +GRV+ E+ FYL+N Y PN+ K+
Sbjct: 62 KKGYSGTAVFTKEEPLTVKRGIGIEE----HDNEGRVLTLEYGNFYLVNVYTPNS--KQG 115
Query: 160 ENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPN 218
R W+ ++++ + KP+I CGDLNV+H+EID+ +P N
Sbjct: 116 LERLDYRMVWEDVFRKYLKELEKNKPVIICGDLNVAHKEIDLKNP------------TSN 163
Query: 219 KEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKD-MDCGFSWSGNPIGKYRGKRMR 277
+++ GFT ER + +L+ G ID YR+ + +K+ M +S+ N G R
Sbjct: 164 RKN---AGFTDEERSKISELLEAG-FIDTYRYFYPDKEGMYSWWSYRFNARANNAG--WR 217
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
IDYF+VSE LKD+ ++ I +E GSDHCPV L ++
Sbjct: 218 IDYFLVSESLKDK-----LEDAKIHME-VTGSDHCPVELTIN 253
>gi|303232423|ref|ZP_07319115.1| exodeoxyribonuclease III [Atopobium vaginae PB189-T1-4]
gi|302481507|gb|EFL44575.1| exodeoxyribonuclease III [Atopobium vaginae PB189-T1-4]
Length = 259
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 87/287 (30%), Positives = 133/287 (46%), Gaps = 34/287 (11%)
Query: 37 SKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQI 94
S+K + +WN N L +K + P F + + + + D+I +Q L + Y
Sbjct: 2 SQKHTYRLASWNVNGLRAVMKKD-PNFIDVVQSLNVDIIGIQETKLQEGQIALDLPGYTQ 60
Query: 95 WWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPN 153
WS A+ K Y+GTA+ K+ P + ++ +A E GRV EF F+ +N Y PN
Sbjct: 61 TWSYAERKGYSGTAVFSKEA--PLQTIHTIGCSAADNE--GRVCALEFNDFWFVNVYTPN 116
Query: 154 NGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLN 212
+ K E R +WD+ + F+ K P+I CGD N +HEEID+ +P
Sbjct: 117 S--KNELARLDERMEWDEAYRSFLHTLDAKKPVITCGDFNCAHEEIDLKNP--------- 165
Query: 213 GYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYR 272
N ++ GF+ ER F +L G D +R H D WS + R
Sbjct: 166 ---ATNHQN---AGFSDEERASFTKLLNTG-FTDTFRAAHPTL-TDAYSWWSYRMRSRER 217
Query: 273 GKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
RIDYF+VS+ +K+++ + YGSDHCPV L ++
Sbjct: 218 NAGWRIDYFLVSDRIKNQVSDARIHA------DVYGSDHCPVGLTIT 258
>gi|160947302|ref|ZP_02094469.1| hypothetical protein PEPMIC_01235 [Parvimonas micra ATCC 33270]
gi|343520435|ref|ZP_08757404.1| exodeoxyribonuclease III [Parvimonas sp. oral taxon 393 str. F0440]
gi|158446436|gb|EDP23431.1| exodeoxyribonuclease III [Parvimonas micra ATCC 33270]
gi|343397393|gb|EGV09927.1| exodeoxyribonuclease III [Parvimonas sp. oral taxon 393 str. F0440]
Length = 250
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 80/281 (28%), Positives = 144/281 (51%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPFK--NYQIWWSLA 99
++F++WN N L +K + ++ N I + D LQ + + + Y+ +++ A
Sbjct: 1 MRFISWNVNGLRACIKKGFLDYFNEI---NADFFCLQEIKMSEGQLDLELEGYETFYNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ K F+P V + + +++ +GR+I E++ F+L+ Y PN+ K+
Sbjct: 58 QRKGYSGTAIFTK--FKPLSVKYGMGME--EHDNEGRLITLEYDDFFLVTCYTPNS--KQ 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R W+ + ++L + K +I CGDLNV+H+EID+ +P
Sbjct: 112 ELLRLDYRMVWEDAFRNYLLDLNKTKSVIVCGDLNVAHKEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GFT ER++ +L G D +R+ + +K+ + + WS + R R
Sbjct: 158 -KTNRKNAGFTDEEREKMSILLDSG-FTDTFRYFYPDKENEYSW-WSYFGKSRERNTGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S+++ DR++ ++ + GSDHCPV LE+
Sbjct: 215 IDYFLTSKDMDDRLVDAQIH------QSILGSDHCPVYLEI 249
>gi|326804146|ref|YP_004321964.1| exodeoxyribonuclease III [Aerococcus urinae ACS-120-V-Col10a]
gi|326650889|gb|AEA01072.1| exodeoxyribonuclease III [Aerococcus urinae ACS-120-V-Col10a]
Length = 281
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 90/305 (29%), Positives = 138/305 (45%), Gaps = 56/305 (18%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFSN----FITTFDPDVIALQILMRALSSPP------- 88
+KF++WN +SL L +N + S I +DPD+IA+Q + P
Sbjct: 1 MKFISWNIDSLNAALTSDSNRAQLSRQVLETIDQYDPDLIAIQETKLSAKGPTKKHQEAL 60
Query: 89 ---FKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEF 141
F +Y W A YAG +L KK +P +++ + +GR+I +F
Sbjct: 61 EEWFPDYNNAWVSSVEPARKSYAGNMVLYKKSLEPI-ITYPKIGAPEPMDSEGRIITLDF 119
Query: 142 ETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEE 197
FY Y PN G N +R R+ WD++ +++ Q KPLI GD NV+H+E
Sbjct: 120 GAFYFTQVYTPNAG-----NGLKRLAERQVWDEKYAQYLSQLDQEKPLIATGDFNVAHKE 174
Query: 198 IDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDM 257
ID++HPE + GFT ER F +L +G D +R +H D+
Sbjct: 175 IDLAHPE---------------NNHKSAGFTDEERSGFTKLLDQG-FTDTFRHIH--GDV 216
Query: 258 DCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVS 315
+ +SW + K RIDYF+VS+ + + + EM G DH P+
Sbjct: 217 EGVYSWWAQRVKTSKINNSGWRIDYFLVSDRIANAVEKSEMIDSGTR------QDHTPIY 270
Query: 316 LELSE 320
LE+S+
Sbjct: 271 LEISD 275
>gi|308179822|ref|YP_003923950.1| exodeoxyribonuclease III [Lactobacillus plantarum subsp. plantarum
ST-III]
gi|308045313|gb|ADN97856.1| exodeoxyribonuclease III [Lactobacillus plantarum subsp. plantarum
ST-III]
Length = 254
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 87/286 (30%), Positives = 135/286 (47%), Gaps = 46/286 (16%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTF---DPDVIALQ--ILMRALSSPPFKNYQIWW 96
+K ++WN N L VK+ F+TTF D D +Q L F Y +W
Sbjct: 1 MKLISWNVNGLRAAVKHG------FVTTFNELDADFFCVQETKLQAGQIELDFPGYYQYW 54
Query: 97 SLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNG 155
+ A+ K Y+GTA+ K +P V++ + +++ +GRVI E+ +Y+L Y PN+G
Sbjct: 55 NYAERKGYSGTAIFTKH--EPLNVTYGI--GVPEFDDEGRVITLEYADYYVLTCYTPNSG 110
Query: 156 WKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVS--HPEFFAAAKLN 212
E R++W+ ++ S KPLI+CGDLNV+HE ID+ H +A
Sbjct: 111 --GELKRLDYRQQWEDAFLTYINSLSANKPLIFCGDLNVAHENIDLKNWHSNHHSA---- 164
Query: 213 GYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYR 272
GFT ER +F +L G F + D+ +S+ G+
Sbjct: 165 -------------GFTDEERTKFDRLLAAGYTDTFRHFYPDQTDIYSWWSYRGHARDNNS 211
Query: 273 GKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
G RIDYFI S++L +++ + +GSDHCPV L++
Sbjct: 212 G--WRIDYFITSQQLDSQLLNARIHNE------IFGSDHCPVELDI 249
>gi|427413104|ref|ZP_18903296.1| exodeoxyribonuclease III (xth) [Veillonella ratti ACS-216-V-Col6b]
gi|425715920|gb|EKU78906.1| exodeoxyribonuclease III (xth) [Veillonella ratti ACS-216-V-Col6b]
Length = 251
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 87/286 (30%), Positives = 137/286 (47%), Gaps = 44/286 (15%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ-----ILMRALSSPPFKNYQIWW 96
+K ++WN N L V F D D+ LQ + L P ++ Y W
Sbjct: 1 MKLISWNVNGLRAAVTKG---FMESFEKLDADMFCLQETKLQLHQIELELPGYEQY--WN 55
Query: 97 SLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 156
S Y+GTA+ + +P V + + +++ +GRVI AE++ FYL+ Y PN+
Sbjct: 56 SAVKKGYSGTAIFTR--VKPLNVIYGI--GIEEHDQEGRVITAEYDNFYLVTCYTPNS-- 109
Query: 157 KEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 215
+ E + R W+ + ++L+ K P+I CGDLNV+H EID+ +P
Sbjct: 110 QRELARLEYRMTWEDAFRAYLLELDAKKPVILCGDLNVAHNEIDLKNP------------ 157
Query: 216 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 275
K + GFT ER++ +L G D +R L+ D+ +SW + +GK R +
Sbjct: 158 ---KTNRKNAGFTDEEREKMTELLNAG-FTDTFRKLY--PDVTDAYSW-WSYMGKARDRN 210
Query: 276 M--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
+ RIDYFI S L I+ ++ +GSDHCPV LE++
Sbjct: 211 VGWRIDYFITSARLDKDIVEAKIH------PDIFGSDHCPVELEIN 250
>gi|421077946|ref|ZP_15538906.1| exodeoxyribonuclease III Xth [Pelosinus fermentans JBW45]
gi|392523930|gb|EIW47096.1| exodeoxyribonuclease III Xth [Pelosinus fermentans JBW45]
Length = 250
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 84/281 (29%), Positives = 136/281 (48%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F F T D D+ +Q + + Y+ +W+ A
Sbjct: 1 MKLISWNVNGLRACLSKG---FEGFFNTADADIFCIQETKMHPDQAEIGLIGYEKYWNSA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ + P V + L +++ +GR+I EFE F+L+N Y PN+ K
Sbjct: 58 VKKGYSGTAVFTR--ITPLSVIYGLNIE--EHDQEGRLITLEFENFFLVNVYTPNS--KR 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R +W+ + +++ + KP+I CGD+NV+H+EID+ +P
Sbjct: 112 ELLRLDYRMRWEDEFRTYLITLNQSKPVIICGDINVAHQEIDIKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GFT ER + A+L+ G D +R ++ +K +D WS + R R
Sbjct: 158 -KTNRRNAGFTDEERDKMTALLEAG-FTDTFRHIYPDK-IDAYTWWSYMMNARARNIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+VS L++ I + GSDHCP+ LE+
Sbjct: 215 IDYFLVSNTLREAIKEATI------YPDVMGSDHCPIGLEI 249
>gi|340719564|ref|XP_003398220.1| PREDICTED: LOW QUALITY PROTEIN: recombination repair protein 1-like
[Bombus terrestris]
Length = 357
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 88/285 (30%), Positives = 144/285 (50%), Gaps = 40/285 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPP----FKNYQIWWS 97
LK +WN + + +K N E+ + D D+IALQ + P Y ++
Sbjct: 105 LKISSWNVSGIRAVIKKNGMEY---MLKEDADIIALQETKCDKNKLPEEVKLNGYH-YYF 160
Query: 98 LADSK--YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNG 155
L K Y G AL K+ +P + + L+ ++++ +GR+I AE+ FYL+N Y PN G
Sbjct: 161 LESKKPGYCGVALYTKE--KPIDIKYGLDN--VEFDSEGRLITAEYSNFYLINVYVPNAG 216
Query: 156 WKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY 214
K + +R KW++ + +V KP+I CGD+NV+H++ID+ +P+
Sbjct: 217 QKLI--TLPKRLKWNEAFKAYVKNLDEKKPVIICGDMNVAHQKIDLKNPD---------- 264
Query: 215 VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGK 274
NK++ GFT ER L G +D +R L+ K+ F WS + +
Sbjct: 265 --TNKKN---AGFTQEERSGMTDFLDAG-FVDTFRALYPNKEGAYTF-WSYFANARSKNI 317
Query: 275 RMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
R+DYF+VSE++KD + C+ + + YGSDHCP+ L ++
Sbjct: 318 GWRLDYFLVSEQIKDNV--CD----NVIRDKVYGSDHCPIVLYIN 356
>gi|225376286|ref|ZP_03753507.1| hypothetical protein ROSEINA2194_01924 [Roseburia inulinivorans DSM
16841]
gi|225211932|gb|EEG94286.1| hypothetical protein ROSEINA2194_01924 [Roseburia inulinivorans DSM
16841]
Length = 255
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 87/279 (31%), Positives = 136/279 (48%), Gaps = 36/279 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+KF++WN N L ++ F +F D D +Q L + Y +W+ A
Sbjct: 5 MKFISWNVNGLRACMQKG---FLDFFNEVDADFFCVQETKLQEGQIALDLPGYHQFWNYA 61
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K +P VS+ + +++ +GRVI E++ FYL+ Y PN+ +
Sbjct: 62 EKKGYSGTAIFTKH--EPLSVSYGI--GIPEHDHEGRVITLEYDAFYLVTCYTPNS--QN 115
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R +W++ F+ + KP+I CGDLNV+HEEID+ +P
Sbjct: 116 ELARLPYRMQWEEDFLAFLKRLDEVKPVIVCGDLNVAHEEIDLKNP-------------- 161
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER + +L G D +R+ + +K+ + WS + + R
Sbjct: 162 -KTNRKNAGFSDEERAKMTTLLNSG-FTDTFRYFYPDKEGIYSW-WSYRFKAREKNAGWR 218
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
IDYFI S L ++ +Q GI E YGSDHCPV L
Sbjct: 219 IDYFITSRCLDEK-----LQSAGIHTE-VYGSDHCPVEL 251
>gi|347531556|ref|YP_004838319.1| exodeoxyribonuclease [Roseburia hominis A2-183]
gi|345501704|gb|AEN96387.1| exodeoxyribonuclease [Roseburia hominis A2-183]
Length = 255
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 88/282 (31%), Positives = 133/282 (47%), Gaps = 38/282 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPF--KNYQIWWSLA 99
+K ++WN N L ++ F+ F T D D+ +Q F + Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMQKG---FAEFFTASDADIFCIQESKLQEGQIDFAPEGYYAYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ +K +P V + + +++ +GRVI EF FY++ Y PN+ +
Sbjct: 58 QKKGYSGTAIFTRK--EPLSVHYGIGIP--QHDTEGRVITLEFPDFYMVTCYTPNS--QN 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R +W+ ++ KPLI CGDLNV+HEEID+ +P
Sbjct: 112 ELARLSYRMEWEDAFLSYLKGLDRNKPLILCGDLNVAHEEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
K + GFT ER + A+L G D +R H D + +S WS + +
Sbjct: 158 -KTNRKNAGFTDEERTKMTALLSAG-FTDTFR--HFYPDTEGIYSWWSYRFHAREKNAGW 213
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYFI S L DR++ + L GSDHCPV+L +
Sbjct: 214 RIDYFITSSALDDRLVDAGI------LTDVTGSDHCPVTLTV 249
>gi|328958150|ref|YP_004375536.1| apurinic/apyrimidinic endonuclease [Carnobacterium sp. 17-4]
gi|328674474|gb|AEB30520.1| apurinic/apyrimidinic endonuclease [Carnobacterium sp. 17-4]
Length = 253
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 89/285 (31%), Positives = 134/285 (47%), Gaps = 38/285 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+KF++WN N L VK F D D LQ L F Y +W+ A
Sbjct: 1 MKFISWNVNGLRAIVKKG---FVEIFEELDADFFCLQETKLQEGQIELDFPGYYDYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K +P VS+ + K +++ +GRVI + +Y++ Y PN+ K
Sbjct: 58 EKKGYSGTAIFTKH--KPLDVSYGIGKP--EHDQEGRVITLSYPNYYVVTCYTPNS--KS 111
Query: 159 EENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R +W+ Q ++ + S KP+I CGDLNV+HE ID+ +
Sbjct: 112 ELKRLDYRMQWEDDFQLYLKKLDSEKPVILCGDLNVAHENIDLKNW-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI-GKYRGKRM 276
K + GF+ ER +F A+L G ID +R+ + D++ ++W +
Sbjct: 158 -KTNQLSAGFSKEERMKFSALLDAG-FIDTFRYFY--PDLEGAYTWWNYRFNARKTNAGW 213
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEA 321
RIDYF VS L+D + + L+ GSDHCPV L L E
Sbjct: 214 RIDYFCVSTRLQDHLQEARI------LDDIVGSDHCPVELILKET 252
>gi|399925203|ref|ZP_10782561.1| exodeoxyribonuclease III [Peptoniphilus rhinitidis 1-13]
Length = 254
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 89/284 (31%), Positives = 145/284 (51%), Gaps = 38/284 (13%)
Query: 40 DPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWS 97
+ +K ++WN N L VK F + D D+ ALQ L +Y +++
Sbjct: 2 EEIKMISWNVNGLRAVVKKG---FMDEFKKLDADLFALQEIKLQEGQIEIDLPHYYEFYN 58
Query: 98 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 156
A+ K Y+GTA+ KK +P V++ + +++ +GRVI EFE FY + Y PN+
Sbjct: 59 YAEKKGYSGTAIFSKK--EPISVNYGI--GIDEHDKEGRVITLEFENFYFVTCYTPNSKR 114
Query: 157 KEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 215
K E + R+ W+ + ++ + K +I CGDLNV+H+EID+++P
Sbjct: 115 KLERLDY--RQVWEDDFRNYLNELRKNKEVILCGDLNVAHKEIDLANP------------ 160
Query: 216 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGK 274
N++ GFT ER++F +LK G ID +R+ + D+ +S WS + R
Sbjct: 161 STNRK---SAGFTDEEREKFTELLKNG-YIDTFRYFY--PDLKDEYSWWSYFAKSRERNV 214
Query: 275 RMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF+VSE L+ ++ ++ + GSDHCPV L++
Sbjct: 215 GWRIDYFVVSEGLEKHLVDAKIHQEVM------GSDHCPVELKI 252
>gi|328956310|ref|YP_004373643.1| exodeoxyribonuclease III Xth [Coriobacterium glomerans PW2]
gi|328456634|gb|AEB07828.1| exodeoxyribonuclease III Xth [Coriobacterium glomerans PW2]
Length = 283
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 89/306 (29%), Positives = 144/306 (47%), Gaps = 50/306 (16%)
Query: 32 SSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPF 89
S E + + +F +WN N L +K P+FS + + D++A+Q L
Sbjct: 9 SQPERADERIYRFASWNVNGLRALMKKE-PDFSEIAASLNADILAIQETKLQEGQIDLDL 67
Query: 90 KNYQIWWSLADSK-YAGTALLVKKCFQPKKV-----SFSLEKTALKYEP---DGRVILAE 140
Y WS A K Y+GTA+ ++ QP + + + EP +GRV E
Sbjct: 68 AGYHQTWSYAARKGYSGTAVFSRE--QPIRTLRADAMLDVVEGGELLEPAIREGRVCALE 125
Query: 141 FETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC---SGKPLIWCGDLNVSHEE 197
FE F+ + Y PN+ ++ R WD+ + F+ Q KP++ CGD NV+H E
Sbjct: 126 FERFWFADVYTPNS--QDGLARLPVRLAWDEAYRAFLKQLERMGDKPVVTCGDFNVAHNE 183
Query: 198 IDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDM 257
ID+ +P K + G GF+ ER F +L+ G D +R+L+ D+
Sbjct: 184 IDLRNP---------------KSNRGNAGFSDEERASFSRLLEAG-FTDTFRYLY--PDV 225
Query: 258 DCGFSWSGNPIGKYRGKRM----RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCP 313
+SW ++ +R RIDYF+VS+ ++DRI+ ++ + +GSDHCP
Sbjct: 226 RDAYSWWSY---RFHARRTNAGWRIDYFLVSDSVRDRIVEATIR------QDVFGSDHCP 276
Query: 314 VSLELS 319
V L ++
Sbjct: 277 VELVIA 282
>gi|254555843|ref|YP_003062260.1| exodeoxyribonuclease III [Lactobacillus plantarum JDM1]
gi|380031793|ref|YP_004888784.1| exodeoxyribonuclease III [Lactobacillus plantarum WCFS1]
gi|418274434|ref|ZP_12889932.1| exodeoxyribonuclease III [Lactobacillus plantarum subsp. plantarum
NC8]
gi|448820389|ref|YP_007413551.1| Exodeoxyribonuclease III [Lactobacillus plantarum ZJ316]
gi|254044770|gb|ACT61563.1| exodeoxyribonuclease III [Lactobacillus plantarum JDM1]
gi|342241036|emb|CCC78270.1| exodeoxyribonuclease III [Lactobacillus plantarum WCFS1]
gi|376010000|gb|EHS83326.1| exodeoxyribonuclease III [Lactobacillus plantarum subsp. plantarum
NC8]
gi|448273886|gb|AGE38405.1| Exodeoxyribonuclease III [Lactobacillus plantarum ZJ316]
Length = 254
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 85/284 (29%), Positives = 135/284 (47%), Gaps = 42/284 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTF---DPDVIALQ--ILMRALSSPPFKNYQIWW 96
+K ++WN N L VK+ F+TTF D D +Q L F Y +W
Sbjct: 1 MKLISWNVNGLRAAVKHG------FVTTFNELDADFFCVQETKLQAGQIELDFPGYYQYW 54
Query: 97 SLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNG 155
+ A+ K Y+GTA+ K +P V++ + +++ +GRVI E+ +Y+L Y PN+G
Sbjct: 55 NYAERKGYSGTAIFTKH--EPLNVTYGI--GVPEFDDEGRVITLEYADYYVLTCYTPNSG 110
Query: 156 WKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY 214
E R++W+ ++ S KPLI+CGDLNV+HE ID+ +
Sbjct: 111 --GELKRLDYRQQWEDAFLTYINSLSANKPLIFCGDLNVAHENIDLKNW----------- 157
Query: 215 VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGK 274
+ + GFT ER +F +L G F + D+ +S+ G+ G
Sbjct: 158 ----RSNHHSAGFTDEERTKFDRLLAAGYTDTFRHFYPDQTDIYSWWSYRGHARDNNSG- 212
Query: 275 RMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYFI S++L +++ + +GSDHCPV L++
Sbjct: 213 -WRIDYFITSQQLDSQLLNARIHNE------IFGSDHCPVELDI 249
>gi|456012224|gb|EMF45930.1| Exodeoxyribonuclease III [Planococcus halocryophilus Or1]
Length = 252
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 137/281 (48%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
LK ++WN N L +K F +F T + DV LQ L Y +W+ A
Sbjct: 2 LKLISWNVNGLRAVMKKG---FMDFFTEVNADVFCLQEIKLQEGQIEMDLPGYYTYWNYA 58
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ K+ +P + + L L + +GR+I EF+ +Y++ Y PN+ +
Sbjct: 59 HKKGYSGTAIFTKQ--KPLSIQYGLGLEEL--DTEGRIITLEFDNYYVITVYTPNS--QH 112
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R W+ I FV KP++ CGDLNV+HEEID+ +P+
Sbjct: 113 GLLRLDYRLLWEDAILSFVKALDNHKPVLLCGDLNVAHEEIDLRNPK------------A 160
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
NK++ GFT+ ER + L++G +D +R H E++ + WS + + R
Sbjct: 161 NKKN---SGFTLEERGKMTQFLEKG-FVDTFRHFHPEEEGHYSW-WSYRSNCREKNVGWR 215
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S+ L +Q I ++ +GSDHCPV L++
Sbjct: 216 IDYFLASQRL-----VPALQSAKIHID-IWGSDHCPVELQV 250
>gi|325261710|ref|ZP_08128448.1| exodeoxyribonuclease III [Clostridium sp. D5]
gi|324033164|gb|EGB94441.1| exodeoxyribonuclease III [Clostridium sp. D5]
Length = 250
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 86/282 (30%), Positives = 140/282 (49%), Gaps = 36/282 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+KF++WN N + V+ F F + D D+ +Q + S + Y +W+ A
Sbjct: 1 MKFISWNVNGIRACVQKG---FLEFFSQADADIFCIQETKMQEGQLSLELEGYHQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ K +P V + + +++ +GRVI E+E FY + Y PN +
Sbjct: 58 VKKGYSGTAVFSK--IEPLSVVYGI--GIEEHDQEGRVITLEYEDFYFVTVYTPNA--QN 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R KW+ + ++ + KP++ GD+NV+H+EID+ +P
Sbjct: 112 ELARLDYRMKWEDDFRAWLKKLEENKPVVVTGDMNVAHKEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER++F +L G ID +R+ + +++ + WS + + R
Sbjct: 158 -KTNRKSAGFSDEERQKFTELLDAG-FIDTFRYFYPDQEGIYSW-WSYRFRAREKNAGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
IDYF VSE LKDR++ GI L GSDHCPV LE++
Sbjct: 215 IDYFCVSECLKDRLVDA-----GI-LTDIMGSDHCPVVLEMN 250
>gi|297587792|ref|ZP_06946436.1| exodeoxyribonuclease III [Finegoldia magna ATCC 53516]
gi|302380031|ref|ZP_07268510.1| exodeoxyribonuclease III [Finegoldia magna ACS-171-V-Col3]
gi|297574481|gb|EFH93201.1| exodeoxyribonuclease III [Finegoldia magna ATCC 53516]
gi|302312257|gb|EFK94259.1| exodeoxyribonuclease III [Finegoldia magna ACS-171-V-Col3]
Length = 253
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 86/285 (30%), Positives = 141/285 (49%), Gaps = 40/285 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPE-FSNFITTFDPDVIALQ-ILMR---ALSSPPFKNYQIW- 95
+K ++WN N + W + F + + D+ LQ I M+ + Y +
Sbjct: 1 MKLISWNVNGY----RAVWKKGFKEAFDSLNADIFCLQEIKMKENQMTDEMEIEGYHRYS 56
Query: 96 WSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNG 155
+S + Y+GT + K +P VSF + +++ +GRVI E+E F+L+N Y PN+
Sbjct: 57 YSANKAGYSGTLVYTKT--EPIGVSFGI--GIDEHDTEGRVITCEYEDFFLVNVYTPNSK 112
Query: 156 WKEEENSFQRRRKWDKRIQEFV-LQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY 214
K E + R W+ ++ + KP+I CGDLNV+H EID+ +P+
Sbjct: 113 QKLERLDY--RMVWEDEFHNYLNILRDRKPVIVCGDLNVAHNEIDLKNPQ---------- 160
Query: 215 VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGK 274
N+ GFT ER + +L +G ID +R+ + +K + + WS + R
Sbjct: 161 --SNRR---SAGFTDEERNKMSLLLNDG-YIDTFRYFYPDKTDEYSY-WSYFAKARERNA 213
Query: 275 RMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
RIDYFIVS++LKD ++ ++ + GSDHCPV LE++
Sbjct: 214 GWRIDYFIVSDDLKDNLVDAKIH------QSIMGSDHCPVELEIN 252
>gi|373115658|ref|ZP_09529827.1| exodeoxyribonuclease III (xth) [Lachnospiraceae bacterium
7_1_58FAA]
gi|371670180|gb|EHO35266.1| exodeoxyribonuclease III (xth) [Lachnospiraceae bacterium
7_1_58FAA]
Length = 250
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 90/285 (31%), Positives = 138/285 (48%), Gaps = 44/285 (15%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
++ VTWN N L + F +F D DV+ LQ L + Y+++W+ A
Sbjct: 1 MRLVTWNVNGLRACLGKG---FLDFFQRVDADVVCLQETKLQPDQIALELPGYRLFWNSA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ + +P V+ + A +E GRVI AEF+ F+L+ Y PN +
Sbjct: 58 EKKGYSGTAVFTR--VEPLSVTCGIGLDAHDHE--GRVITAEFDGFFLVCCYTPNA--QN 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R +W+ + ++++ K P++ CGDLNV+HEEID+ +P
Sbjct: 112 ELARIDYRMQWEDDFRAYLMELDKKKPVVLCGDLNVAHEEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + G GF+ ER + +L G D +R L+ ++ + WS + R
Sbjct: 158 -KSNRGSAGFSDQERGKMTELLSSG-FTDTFRALYPDRTGAYTW-WSYRFNARKNNAGWR 214
Query: 278 IDYFIVSEEL----KDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYFIVS+ L +D II E++ GSDHCPV L L
Sbjct: 215 IDYFIVSDRLLPRVRDNIIHAEVE----------GSDHCPVELVL 249
>gi|420432830|ref|ZP_14931843.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-16]
gi|393046920|gb|EJB47899.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-16]
Length = 236
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 82/260 (31%), Positives = 131/260 (50%), Gaps = 33/260 (12%)
Query: 63 FSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKV 119
F +F + D DV +Q + + ++ FK Y +W+ A K Y+G KK +P V
Sbjct: 5 FMDFFNSVDADVFCIQESKMQQEQNTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSV 62
Query: 120 SFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ 179
S+ ++ +++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+
Sbjct: 63 SYGIDIE--EHDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKA 118
Query: 180 CS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAI 238
KP+I CGDLNV+H EID+ +P K + GF+ ER++F +
Sbjct: 119 LELKKPVIVCGDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSEL 163
Query: 239 LKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQG 298
L G ID +R+ + K+ + WS + + RIDYF+ S LK R+
Sbjct: 164 LNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------K 215
Query: 299 HGIELEGFYGSDHCPVSLEL 318
+ + GSDHCPV LEL
Sbjct: 216 DALIYKDILGSDHCPVGLEL 235
>gi|363896773|ref|ZP_09323322.1| exodeoxyribonuclease [Oribacterium sp. ACB7]
gi|361960338|gb|EHL13587.1| exodeoxyribonuclease [Oribacterium sp. ACB7]
Length = 251
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 139/281 (49%), Gaps = 39/281 (13%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLAD 100
K ++WN N L + N F D D+ LQ L Y +W+ A
Sbjct: 3 KLISWNVNGLRAVMGKN---FMEDFRKLDADIFCLQETKLQAGQIELDLPGYFQYWNYAV 59
Query: 101 SK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEE 159
K Y+GTA+ K+ +P VS+ + +++ +GRVI AEF+ FYL+ Y PN+ + E
Sbjct: 60 KKGYSGTAIFTKE--EPLSVSYGI--GVEEHDQEGRVITAEFKDFYLITVYVPNS--QGE 113
Query: 160 ENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPN 218
R +++ ++L K P+++CGDLNV+HEEID+ +P+
Sbjct: 114 LKRLPYRMEFEDAFLNYILNLEKKKPVVYCGDLNVAHEEIDLKNPD-------------- 159
Query: 219 KEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMR 277
+ GF+ ER +F +L G L D++R+ + EK+ +S WS + R R
Sbjct: 160 -TNHLSAGFSDEERAKFSRVLDNGYL-DSFRYFYPEKE---EYSWWSYRTKARERNVGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+VS++L+ ++ + + + GSDHCPV L L
Sbjct: 215 IDYFVVSKQLEKKLHSASIHTEVM------GSDHCPVELIL 249
>gi|406931444|gb|EKD66730.1| hypothetical protein ACD_49C00017G0002 [uncultured bacterium (gcode
4)]
Length = 255
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 84/285 (29%), Positives = 145/285 (50%), Gaps = 40/285 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPFKN------YQIW 95
+K +++N N + ++ F +++ + +PD+I LQ + + P K Y+I+
Sbjct: 1 MKLISFNVNGIRSNIQKG---FLDYLISENPDIIGLQEVKAQENELPIKIDLASLWYEIY 57
Query: 96 WSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNN 154
W+ A+ K Y+GTA+ K +P VS+ L +++ + R+I EFE FY +N Y PN
Sbjct: 58 WNSANKKWYSGTAIFTK--IKPLSVSYWL--WLAEHDEEWRIITLEFENFYFVNVYTPNA 113
Query: 155 GWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNG 213
K E R+ WD +++ + KP+I C D NV+H+EID+++P+ K N
Sbjct: 114 --KRELERLDYRQLWDSLFLDYLKRLEQNKPVITCWDFNVAHQEIDLTNPK---TNKWNA 168
Query: 214 YVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRG 273
GFT ER+ F + G ID +R+ + +K + + WS + R
Sbjct: 169 ------------GFTPEEREWFSKFISSG-FIDTFRYFYPDKTWEYSW-WSNFANSRARN 214
Query: 274 KRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF++S LK+++ + ++ + SDHCPV +E+
Sbjct: 215 IGWRIDYFLISNTLKNKLKSAFIK------QEVRWSDHCPVGIEI 253
>gi|389816348|ref|ZP_10207511.1| exodeoxyribonuclease III [Planococcus antarcticus DSM 14505]
gi|388465341|gb|EIM07660.1| exodeoxyribonuclease III [Planococcus antarcticus DSM 14505]
Length = 251
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 88/284 (30%), Positives = 137/284 (48%), Gaps = 40/284 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L +K F +F T D DV LQ L Y +W+ A
Sbjct: 1 MKLISWNVNGLRAVMKKG---FMDFFTEADADVFCLQEIKLQEGQIEMDLPGYYTYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ K+ +P + + L +++ +GR+I EF+ Y++ Y PN+ +
Sbjct: 58 HKKGYSGTAIFTKE--EPLSIQYGLGSE--EHDTEGRMIALEFDGHYVVTVYTPNS--QH 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R W++ I FV KP+I CGDLNV+HEEID+ +P+
Sbjct: 112 GLLRLDYRLLWEEAILSFVKTLDNQKPVILCGDLNVAHEEIDLKNPK------------A 159
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS--WSGNPIGKYRGKR 275
NK++ GFT ER + L +G +D +R H + GF WS + +
Sbjct: 160 NKKN---SGFTPDERGKMTQFLTDG-FVDTFRHFHP---TETGFYSWWSYRSNCREKNVG 212
Query: 276 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
RIDYFI S++L R+ + ++ +GSDHCPV L+++
Sbjct: 213 WRIDYFIASQKLLPRLKSAKIHA------DVWGSDHCPVELQIA 250
>gi|354558981|ref|ZP_08978234.1| exodeoxyribonuclease III [Desulfitobacterium metallireducens DSM
15288]
gi|353545305|gb|EHC14757.1| exodeoxyribonuclease III [Desulfitobacterium metallireducens DSM
15288]
Length = 251
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 82/281 (29%), Positives = 135/281 (48%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPFK--NYQIWWSLA 99
+K ++WN N + V F +F + D+ ++Q PF+ Y +W+ A
Sbjct: 1 MKLISWNVNGIRACVNKG---FLDFFNKENADIFSIQETKVQEEQIPFQLEGYYQYWNFA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ KK +P + + + +++ +GRVI EFE FY++ Y PN+ +
Sbjct: 58 QKKGYSGTAIFSKK--EPLNIRYGI--GIEEHDQEGRVITLEFEKFYMVTVYTPNS--QR 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E + R KW+ ++ KP+I+CGDLNV+H+EID+ +P
Sbjct: 112 ELARLEYRMKWEDDFLHYLRDLEQLKPVIFCGDLNVAHKEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER + ++ +G D +R+ + E+ + WS + R
Sbjct: 158 -KANKNNAGFSAEERGKLTRVMDQG-FTDTFRYFYPEQ-TEAYTWWSYMFNARANNAGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF VS ELKD++ + GSDHCP+ LE+
Sbjct: 215 IDYFCVSAELKDQL------KDAVIYNDVLGSDHCPIGLEI 249
>gi|257877428|ref|ZP_05657081.1| exodeoxyribonuclease [Enterococcus casseliflavus EC20]
gi|325568814|ref|ZP_08145107.1| exodeoxyribonuclease III [Enterococcus casseliflavus ATCC 12755]
gi|257811594|gb|EEV40414.1| exodeoxyribonuclease [Enterococcus casseliflavus EC20]
gi|325157852|gb|EGC70008.1| exodeoxyribonuclease III [Enterococcus casseliflavus ATCC 12755]
Length = 250
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 85/283 (30%), Positives = 134/283 (47%), Gaps = 38/283 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+KF++WN N L VK N FS D D LQ L Y +W+ A
Sbjct: 1 MKFISWNVNGLRAIVKKN---FSEVFEALDADFFCLQETKLQEGQIELDLPGYHQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K+ + +E+ ++ +GRVI E+ F+L+ Y PN+ +
Sbjct: 58 EKKGYSGTAIFAKEPALSVRYGLGIEE----HDTEGRVITLEYPEFFLITCYTPNS--QN 111
Query: 159 EENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R W+ ++ + KP+I CGDLNV+H+ ID+ +
Sbjct: 112 ELRRLDYRMTWEDAFLAYLTELKQQKPVILCGDLNVAHKNIDIKNW-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
K + GFT ER++F +L G D +R+ + D + +S WS +
Sbjct: 158 -KTNQKSAGFTPEEREKFSTLLAAG-FTDTFRYFY--PDAEGIYSWWSYRFNARKNNAGW 213
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
RIDYF+VS++L +R++ ++ I GSDHCPV L+L+
Sbjct: 214 RIDYFVVSDDLNERLLDAKIHTDII------GSDHCPVELDLN 250
>gi|257783920|ref|YP_003179137.1| exodeoxyribonuclease III Xth [Atopobium parvulum DSM 20469]
gi|257472427|gb|ACV50546.1| exodeoxyribonuclease III Xth [Atopobium parvulum DSM 20469]
Length = 259
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 88/288 (30%), Positives = 138/288 (47%), Gaps = 38/288 (13%)
Query: 37 SKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQI 94
S+ K ++WN N L +K P F+ T + DV ALQ L Y
Sbjct: 2 SQTQEYKLISWNVNGLRAVLKKE-PSFTEIFETINADVFALQETKLQEGQVELDLPGYVQ 60
Query: 95 WWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPD-GRVILAEFETFYLLNTYAP 152
W+ AD K Y+GTA+ ++ P +V + + D GRV EFE F+ + Y P
Sbjct: 61 TWNYADRKGYSGTAVFSRET--PLQV---IRQIGCPVADDEGRVCALEFEKFWFVCVYTP 115
Query: 153 NNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKL 211
N+ K++ R +WD+ ++F+ + S KP+I CGD NV+H EID+ +P
Sbjct: 116 NS--KDQLARLDERLEWDQHYRDFLAELSKQKPVITCGDFNVAHNEIDLKNP-------- 165
Query: 212 NGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGK 270
N+++ GF+ ER+ F +L G D +R+ H D+ +S WS +
Sbjct: 166 ----SSNRQN---AGFSDEERESFTKLLDAG-FTDTFRYRH--PDITGAYSWWSYRFNAR 215
Query: 271 YRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF+VS+ + +++ + + L YGSDHCP+ L +
Sbjct: 216 KNNAGWRIDYFLVSDRIAEQVKSASI------LSEIYGSDHCPIELSI 257
>gi|403669653|ref|ZP_10934844.1| exodeoxyribonuclease [Kurthia sp. JC8E]
Length = 253
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 87/283 (30%), Positives = 135/283 (47%), Gaps = 40/283 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+KFV+WN N + +K W + D D +Q Y+ +W+ A
Sbjct: 1 MKFVSWNVNGIRACLKKGWL---TYFQEVDADFFCIQETKCQAGQVEIDLPGYEQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ K P V + + + E +GR+I E+E FY++ Y PN+ K
Sbjct: 58 LKKGYSGTAIFTKHT--PLSVKYGVGDH--ETEDEGRIITLEYENFYVVTVYTPNS--KR 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ + R W+ ++ ++ Q KP+I+CGDLNV+HEEID+ +
Sbjct: 112 DLARLEERLVWEDDLRVYLQQLDAQKPVIYCGDLNVAHEEIDLKNA-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
K + G GFT ER + +L G D++R HK F+W + + K R + +
Sbjct: 158 -KSNVGNSGFTDGERSKMTLLLNSG-FTDSFR--HKYPTESNRFTW-WSYMNKVRERNIG 212
Query: 277 -RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYFIVS+ L +I E+ + GSDHCP++L L
Sbjct: 213 WRIDYFIVSDRLVPQIETAEIHDQQL------GSDHCPIALTL 249
>gi|259047804|ref|ZP_05738205.1| exodeoxyribonuclease III [Granulicatella adiacens ATCC 49175]
gi|259035481|gb|EEW36736.1| exodeoxyribonuclease III [Granulicatella adiacens ATCC 49175]
Length = 254
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 84/285 (29%), Positives = 146/285 (51%), Gaps = 41/285 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILM----RALSSPPFKNYQIWWS 97
+K TWN N + R N ++ +PD++ LQ + F Y+++++
Sbjct: 1 MKLATWNVNGI--RSVLNKGALQEYVLESNPDILCLQETKAQQDQVELGMEFSEYEVFFN 58
Query: 98 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 156
A K Y+GTA+ K+ +P V + + +++ +GRVI AE+E FYL+ Y PN
Sbjct: 59 SAVKKGYSGTAIFTKE--KPLSVEYGI--GIEEHDQEGRVITAEYEKFYLVTVYTPNA-- 112
Query: 157 KEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 215
K + + + R+ W+ F+ + KP+I+CGDLNV+H+EID+++P
Sbjct: 113 KRDLSRLEYRQVWEDDFLAFIKKLEETKPVIFCGDLNVAHKEIDLANP------------ 160
Query: 216 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 275
K + GFT ER +F ++ L+DA+R+L+ D +SW + +G R +
Sbjct: 161 ---KTNTMNAGFTKEERAKFDQVVN-NDLVDAFRYLY--PDTLGAYSW-WSYMGGARARN 213
Query: 276 M--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
+ RIDYF++S+ L + +++ GSDHCPV +++
Sbjct: 214 VGWRIDYFVISQPLTAFLQEVKIRSD------VTGSDHCPVEMKI 252
>gi|339521855|gb|AEJ84092.1| DNA-(apurinic or apyrimidinic site) lyase [Capra hircus]
Length = 318
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 93/323 (28%), Positives = 159/323 (49%), Gaps = 51/323 (15%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
EKE + L D +T+ + K LK WN + +K + ++I
Sbjct: 34 EKEAVGEGAVLYEDPADQKTSPSG-----KSATLKICPWNVDGRRAWIKK---KGVDWIK 85
Query: 69 TFDPDVIALQ----------ILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPK 117
PD++ LQ + ++ LS P +Q W + +D + Y+G LL ++C P
Sbjct: 86 EEAPDILCLQETKCSENKLPVELQELSGLP---HQYWSAPSDKEGYSGVGLLSRQC--PL 140
Query: 118 KVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV 177
KVS+ + + +++ +GRVI+A ++ F L+ Y PN G + R++WD+ ++F+
Sbjct: 141 KVSYGIGEE--EHDQEGRVIVAGYDAFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFL 196
Query: 178 LQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFG 236
S KPL+ CGDLNV+HEE DV +P+ NK++ GFT ER+ FG
Sbjct: 197 KGLASRKPLVLCGDLNVAHEESDVRNPKG------------NKKN---AGFTPQERQGFG 241
Query: 237 AILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEM 296
+L+ L D++R L+ F W+ + + R+DYF++S+ L + ++
Sbjct: 242 ELLQAVPLTDSFRHLYPNTAYAYTF-WTYMMNARSKNVGWRLDYFLLSQSLLPAVCDSKI 300
Query: 297 QGHGIELEGFYGSDHCPVSLELS 319
+ + GSDHCP++L L+
Sbjct: 301 RSKAL------GSDHCPITLYLA 317
>gi|291546831|emb|CBL19939.1| exodeoxyribonuclease III [Ruminococcus sp. SR1/5]
Length = 251
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 81/281 (28%), Positives = 138/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+KF++WN N + + F D D+ LQ + Y +W+ A
Sbjct: 1 MKFISWNVNGIRACITKG---FEERFHELDADIFCLQETKCQQGQVKLELPGYHQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ + Y+GTA+ K+ +P ++ + +++ +GRVI EF+ +Y + Y PN+ +
Sbjct: 58 NRRGYSGTAIFTKR--EPLSAAYGI--GIEEHDKEGRVITLEFDEYYFVTVYTPNS--QS 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E + R KW++ ++L+ KP+I CGDLNV+H+EID+ +P
Sbjct: 112 ELRRLEYRMKWEEDFLAYLLKLQEKKPVICCGDLNVAHQEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GFT ER F L+ G ID +R+ + +K+ + WS + + R
Sbjct: 158 -KTNRKNAGFTDEERACFTRALESG-FIDTFRYFYPDKEGVYSW-WSYRFRAREKNAGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+VS LK+++ ++ G + GSDHCPV L++
Sbjct: 215 IDYFLVSPSLKEKLQDAKIHGEIM------GSDHCPVELDI 249
>gi|328947089|ref|YP_004364426.1| exodeoxyribonuclease III Xth [Treponema succinifaciens DSM 2489]
gi|328447413|gb|AEB13129.1| exodeoxyribonuclease III Xth [Treponema succinifaciens DSM 2489]
Length = 251
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 88/282 (31%), Positives = 137/282 (48%), Gaps = 38/282 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+KF++WN N L + N F + D D LQ L +Y +W+ A
Sbjct: 1 MKFISWNVNGLRAVMGKN---FMEAFGSLDADFFCLQETKLQAGQIQMELPDYHQFWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K +P S+ + +++ +GRVI E+E F+L+ Y PN+ ++
Sbjct: 58 EKKGYSGTAVFTKH--EPISASYGI--GIAEHDTEGRVITLEYEKFFLVTVYTPNS--QD 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E + R KW+ + ++ + K +I CGD+NV+HEEID+ +P
Sbjct: 112 ELRRLEYRMKWEDDFRAYLKTLALKKGVIVCGDMNVAHEEIDIKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
K + GFT ER + +L G D++R H D +S WS + +
Sbjct: 158 -KTNRRNAGFTDEERGKMTELLSSG-FTDSFR--HFYPDTAGVYSWWSYRFHAREKNTGW 213
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF+VS+ +KD+ M G I E GSDHCPV L++
Sbjct: 214 RIDYFLVSDSIKDK-----MTGAKIHTE-ILGSDHCPVELDM 249
>gi|402813355|ref|ZP_10862950.1| exodeoxyribonuclease ExoA [Paenibacillus alvei DSM 29]
gi|402509298|gb|EJW19818.1| exodeoxyribonuclease ExoA [Paenibacillus alvei DSM 29]
Length = 263
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 88/297 (29%), Positives = 147/297 (49%), Gaps = 41/297 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ---ILMRALSSPPFKNYQIWWSL 98
+K ++WN N L V F ++ D D+ +Q + + + Y+ +W+
Sbjct: 1 MKLISWNVNGLRACVNKG---FLDYFREMDADIFCVQETKLQEGQIDLDLGEEYEQYWNY 57
Query: 99 ADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWK 157
A K Y+GTA+ KK +P V + +E+ EP+GR++ EFE+F+L+N Y PN+
Sbjct: 58 ALKKGYSGTAVFTKK--KPLSVRYGIEENE---EPEGRILTLEFESFFLVNVYTPNS--- 109
Query: 158 EEENSFQRRRKWDKRIQEFVLQ--CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 215
+ + S R + F LQ + KP+I CGDLNV+H+ ID+ +
Sbjct: 110 KRDLSRLEERLEWEERFRFYLQKLDACKPVIVCGDLNVAHQVIDLKN------------- 156
Query: 216 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 275
+K + G GFT ER++ IL++ D +R + ++ D WS P + R
Sbjct: 157 --SKSNHGNSGFTTEEREKM-TILQDAGFTDTFRHFYPDQ-TDAYTWWSYMPKVRERNIG 212
Query: 276 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEASS-DSEKREKK 331
RIDYF+VS L+D ++ + + GSDHCP+ L +++ + SE + K+
Sbjct: 213 WRIDYFLVSSRLRDFLVDARIDSN------ILGSDHCPIHLIMNDCDTPQSEDKAKE 263
>gi|386747928|ref|YP_006221136.1| exodeoxyribonuclease III [Helicobacter cetorum MIT 99-5656]
gi|384554170|gb|AFI05926.1| exodeoxyribonuclease III [Helicobacter cetorum MIT 99-5656]
Length = 250
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 85/282 (30%), Positives = 138/282 (48%), Gaps = 36/282 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F T+ + DV +Q + + ++ FK Y +W+ A
Sbjct: 1 MKLISWNVNGLRACMNKG---FMDFFTSVNADVFCIQESKMQQEQNTFDFKGYFDFWNCA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G K +P VS+ + +++ +GRV+ EF+ FYL+N Y PN+ +
Sbjct: 58 IKKGYSGVVTFSKT--EPLNVSYGI--GIEEHDTEGRVVTCEFDKFYLVNVYTPNS--QR 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 112 ALARLEYRMSWEVEFRKFLKNLELQKPVIVCGDLNVAHNEIDLENP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER++F +L G ID +R + K+ + WS + + R
Sbjct: 158 -KANRKNAGFSDEEREKFSELLNAG-FIDTFRHFYPTKEKAYTW-WSYMQQARDKNIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
IDYF+ S+ LK + ++ E GSDHCPV LEL+
Sbjct: 215 IDYFLCSKSLKTELKDAKI------YENILGSDHCPVGLELA 250
>gi|348679732|gb|EGZ19548.1| hypothetical protein PHYSODRAFT_408364 [Phytophthora sojae]
Length = 280
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 94/298 (31%), Positives = 139/298 (46%), Gaps = 42/298 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWP-EFSNFITTFDPDVIALQI-------LMRALSSPPFKNYQ 93
+K V WN N L +K + ++ DPD+ L L + P +Q
Sbjct: 1 IKIVAWNVNGLRAILKRDESVHLRAYVAQEDPDIFCLSETKICRDELQKIEDFLPQYEHQ 60
Query: 94 IWWSLADSKYAGTALLVKKCFQPKKV----------SFSLEKTA-LKYEPDGRVILAEFE 142
W YA TA+ K +P V S + K+A + +GR + E+
Sbjct: 61 YWSCAVKKGYASTAIFSKT--KPLSVKDEIIVGDHDSKGVSKSANSGKDQEGRFLALEYP 118
Query: 143 TFYLLNTYAPNNGWKEEENSFQRRRKWDK-RIQEFVLQCSGKPLIWCGDLNVSHEEIDVS 201
F+L++TY PN G K E F R +WDK ++E KP++WCGDLNV+H+EID+
Sbjct: 119 KFWLVHTYVPNAGGKLERLDF-RTNQWDKAMLREMKEMEKTKPVVWCGDLNVAHQEIDIH 177
Query: 202 HPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGF 261
+P+ NK GFT ER+ FG IL+ G +D +R LH +K F
Sbjct: 178 NPK------------GNKR---SAGFTDEERESFGNILENG-FVDTFRHLHPDKVEYSYF 221
Query: 262 SWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEG-FYGSDHCPVSLEL 318
+ N + +G R+DYF+VSE+L +++ + G GSDH P+ LEL
Sbjct: 222 GYRHNMRAQNKG--WRLDYFVVSEKLMPNVVSVFGWERSSYIRGSVVGSDHLPIGLEL 277
>gi|373851837|ref|ZP_09594637.1| exodeoxyribonuclease III Xth [Opitutaceae bacterium TAV5]
gi|391230369|ref|ZP_10266575.1| exodeoxyribonuclease III [Opitutaceae bacterium TAV1]
gi|372474066|gb|EHP34076.1| exodeoxyribonuclease III Xth [Opitutaceae bacterium TAV5]
gi|391220030|gb|EIP98450.1| exodeoxyribonuclease III [Opitutaceae bacterium TAV1]
Length = 251
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 90/287 (31%), Positives = 138/287 (48%), Gaps = 47/287 (16%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQIL------MRALSSPPFKNYQIW 95
+K V+WN N + ++ ++I DVI LQ ++ + P Y+ W
Sbjct: 1 MKLVSWNVNGVRAVLQKG---LLDYIAASGADVICLQETKCQPGDVQHVVWP--AGYRAW 55
Query: 96 WSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNN 154
W+ A K Y+GTA+ + +P VS L ++ +GRV+ AEF FYL+N Y PN
Sbjct: 56 WNAAQKKGYSGTAIFSR--VEPVAVSCGLGLP--DHDNEGRVLTAEFADFYLVNVYVPNA 111
Query: 155 GWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNG 213
+ E RR+W+ ++ K P++ CGD+NV+H+EID++ P
Sbjct: 112 --QHELVRLPYRRRWNADFLSYLRSLEKKKPVVVCGDMNVAHQEIDLARP---------- 159
Query: 214 YVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRG 273
KE+ G GF+ ER+ F +L+ G +D +R K +SW G RG
Sbjct: 160 -----KENVGNAGFSNEEREDFSTMLRAG-FVDTFREFEKGPGH---YSWWTYRAGA-RG 209
Query: 274 KRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
+ + RIDYF+ S L+ R+ ++ GSDHCPV LEL
Sbjct: 210 RNIGWRIDYFLASAALRPRLKRAWIE------PTVMGSDHCPVGLEL 250
>gi|182413315|ref|YP_001818381.1| exodeoxyribonuclease III Xth [Opitutus terrae PB90-1]
gi|177840529|gb|ACB74781.1| exodeoxyribonuclease III Xth [Opitutus terrae PB90-1]
Length = 253
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 94/294 (31%), Positives = 137/294 (46%), Gaps = 59/294 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ-----------ILMRALSSPPFK 90
+K V+WN N + +K F +++ D DVI LQ + A +P
Sbjct: 1 MKLVSWNVNGVRAVLKKG---FLDYMGKVDADVICLQETKAHPGDVQHVAWTAGYTPH-- 55
Query: 91 NYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 150
W+S Y+GTAL + P KV+F + ++ +GRVI AEF F+L+N Y
Sbjct: 56 ----WYSAVKKGYSGTALFTR--VAPLKVNFGIGLPG--HDDEGRVITAEFADFFLVNVY 107
Query: 151 APNNGWKEEENSFQRRRKWDKRIQEFV--LQCSGKPLIWCGDLNVSHEEIDVSHPEFFAA 208
PN+ + R +WD F+ L+ GKP+++CGDLNV+H+EID+++P
Sbjct: 108 QPNSQRGLTRLKY-RTEEWDPAFLAFLKKLEKKGKPVVFCGDLNVAHQEIDLTNP----- 161
Query: 209 AKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI 268
K + GFT ER F +L G +D +R EK WS
Sbjct: 162 ----------KTNRRNAGFTDEERANFSKLLASG-FVDTFREF--EKGPGHYTWWSQMMN 208
Query: 269 GKYRGKRMRIDYFIVSEELKDRI----IACEMQGHGIELEGFYGSDHCPVSLEL 318
+ R R+DYF+ SE+LK + I+ E+ GSDHCPV LEL
Sbjct: 209 CRARNIGWRVDYFVASEKLKPALKRAWISPEVM----------GSDHCPVGLEL 252
>gi|311032922|ref|ZP_07711012.1| exodeoxyribonuclease III [Bacillus sp. m3-13]
Length = 254
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 91/286 (31%), Positives = 134/286 (46%), Gaps = 39/286 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRA-----LSSPPFKNYQIWW 96
+K V+WN N + VK F ++ D D+ +Q L +P + YQ W
Sbjct: 1 MKLVSWNVNGIRACVKKG---FMDYFNDMDADIFCIQETKLQEGQIDLDTPGY--YQYWN 55
Query: 97 SLADSKYAGTALLVKKCFQPKKVSFSL-EKTALKYEPDGRVILAEFETFYLLNTYAPNNG 155
Y+GTA+ K +P +V + L EK A + EP+GR++ E+E F+L+N Y PN+
Sbjct: 56 YAIKKGYSGTAVFTK--MKPLQVRYGLDEKKAEECEPEGRILTLEYEDFFLVNVYTPNS- 112
Query: 156 WKEEENSFQRRRKWDKRIQEFV-LQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY 214
+ + R W+ R ++ + K +I CGDLNV+H EID+ +P
Sbjct: 113 -QRDLARLPFRLDWEDRFLAYIKMLDQQKSVIVCGDLNVAHAEIDLKNP----------- 160
Query: 215 VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGK 274
K + GFT ER + +L EG D +R + E D WS + R
Sbjct: 161 ----KSNRNNSGFTEEERGKMTRLLGEG-FSDTFRHFYPEL-TDKYTWWSYMNKVRERNI 214
Query: 275 RMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 320
RIDYFIVS+ LK + E+ GSDHCPV L L++
Sbjct: 215 GWRIDYFIVSDNLKGSLKDAEIHSD------IMGSDHCPVVLILNK 254
>gi|389575850|ref|ZP_10165878.1| exodeoxyribonuclease III [Eubacterium cellulosolvens 6]
gi|389311335|gb|EIM56268.1| exodeoxyribonuclease III [Eubacterium cellulosolvens 6]
Length = 250
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 86/283 (30%), Positives = 142/283 (50%), Gaps = 39/283 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+KF++WN N L +K + F D D +Q L + + +W+ A
Sbjct: 1 MKFISWNVNGLRACMKKD---FDKTFRELDADFFCIQESKLQEGQIEYCPEGWNEYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ KK +V++ + + +++ +GRVI E++TF+L+ Y PN+ ++
Sbjct: 58 EKKGYSGTAIWAKK--PALQVTYGIGEE--EHDHEGRVITLEYDTFFLVTVYTPNS--QD 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R W+ + ++ + KP+I CGDLNV+HEEID+ +P
Sbjct: 112 GLKRLDYRMTWEDSFRAYLGKLDEKKPVIVCGDLNVAHEEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
K + GFT ER +F +L G D++R+LH E D +S WS + +
Sbjct: 158 -KTNRKNAGFTDEERGKFTELLDAG-FTDSFRYLHPE---DVEYSWWSYRFHAREKNAGW 212
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
RIDYF+ SE +K++I + + +GSDHCPV L++S
Sbjct: 213 RIDYFLTSERVKEKIEQAVIH------QEIFGSDHCPVELDIS 249
>gi|315452849|ref|YP_004073119.1| exodeoxyribonuclease [Helicobacter felis ATCC 49179]
gi|315131901|emb|CBY82529.1| exodeoxyribonuclease [Helicobacter felis ATCC 49179]
Length = 255
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 87/282 (30%), Positives = 139/282 (49%), Gaps = 36/282 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
++ V+WN N L ++ F +F+ D+ +Q + + F+NY +W+ A
Sbjct: 1 MRLVSWNVNGLRACMQKG---FKDFLLKSGADIFCVQETKMQPDQADFVFENYHAFWNSA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G L K + LE+ ++ +GRVI E+E FYL+N Y PN+ +
Sbjct: 58 QKKGYSGVLTLSKSAPLDVRYGLGLEE----HDTEGRVITCEYEYFYLVNVYTPNS--QR 111
Query: 159 EENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R +W+ +EF+ S K ++ CGDLNV+H EID+++P+
Sbjct: 112 GLLRLPYRLQWESVFREFLQNLASHKEVLICGDLNVAHTEIDLTNPQ------------S 159
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
N+ + GF+ ER FG +L+ G LID YR + +K + WS + R R
Sbjct: 160 NRYN---AGFSDPERNAFGQLLQLG-LIDTYRHFYPDK-TEVYTWWSYMNQSRARNIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
IDYF+ S+ L+ ++ + H + GSDHCPV LE+S
Sbjct: 215 IDYFLASQGLRSQLKDACIYAHIL------GSDHCPVGLEMS 250
>gi|406882207|gb|EKD30059.1| hypothetical protein ACD_78C00169G0004 [uncultured bacterium (gcode
4)]
Length = 267
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 88/285 (30%), Positives = 142/285 (49%), Gaps = 40/285 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPF------KNYQIW 95
+K V+WN N + + F ++ T +PD+I LQ + P Y I+
Sbjct: 13 MKAVSWNVNGVRSVLTKG---FLEYLATENPDIIGLQEVKATEEQFPAGFDLQSMGYHIY 69
Query: 96 WSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNN 154
W+ A+ K Y+GTA+ K +P V + L +++ +GR+I EFE ++ + Y PN
Sbjct: 70 WNAAERKGYSGTAVFSK--VEPISVRYGLGMK--EHDQEGRIITLEFEKYFFVTVYTPNA 125
Query: 155 GWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNG 213
K E + R+ WD +++ + KP+I CGDLNV+H+EID+++P+
Sbjct: 126 --KSELERLEYRQLWDSLFFDYLKRLEVEKPVIVCGDLNVAHQEIDLTNPK--------- 174
Query: 214 YVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRG 273
PN+ W GFT ER FG L G ID +R + +K + + WS + R
Sbjct: 175 ---PNR--W-NAGFTDEERAGFGHYLANG-FIDTFRHFYPDKTGEYTW-WSNFFKSRDRN 226
Query: 274 KRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF++SE L + + ++ + GSDHCPV +++
Sbjct: 227 IGWRIDYFLISERLVTNLKSAFIR------QEIRGSDHCPVGIKI 265
>gi|374710435|ref|ZP_09714869.1| apurinic/apyrimidinic endonuclease [Sporolactobacillus inulinus
CASD]
Length = 253
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/283 (29%), Positives = 138/283 (48%), Gaps = 39/283 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQIL-----MRALSSPPFKNYQIWW 96
+KF++WN N R + +++ D + +Q + +P + +Q W
Sbjct: 1 MKFISWNVNGF--RALQRKMDVFSWLKETGADALCIQETKLHQDQVQIDTPGY--HQFWN 56
Query: 97 SLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 156
Y+GTA+ K +P +V++ + ++ +GR+I E+E +YL+ Y PN
Sbjct: 57 DAVRKGYSGTAIFTKN--KPLRVTYGMGIEV--HDQEGRLITLEYEDYYLVTVYTPNA-- 110
Query: 157 KEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 215
K + R +W +++ + KP+I+CGDLNV+H+ ID+++P
Sbjct: 111 KRDLTRLAYRLEWGAAFTDYMKRLDEKKPVIFCGDLNVAHQAIDLTYP------------ 158
Query: 216 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 275
K + G GFTI ER+ F A+L G +D++R L+ E+ D WS + R
Sbjct: 159 ---KNNKGNSGFTIEEREDFTALLNNG-FVDSFRHLYPER-TDAYSWWSFLFNARERNIG 213
Query: 276 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF++S+ L I ++ L YGSDHCPV L+L
Sbjct: 214 WRIDYFVLSKCLSSSIRDAKL------LTEIYGSDHCPVELDL 250
>gi|293115606|ref|ZP_05792271.2| exodeoxyribonuclease III [Butyrivibrio crossotus DSM 2876]
gi|292809044|gb|EFF68249.1| exodeoxyribonuclease III [Butyrivibrio crossotus DSM 2876]
Length = 237
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/260 (31%), Positives = 137/260 (52%), Gaps = 37/260 (14%)
Query: 63 FSNFITTFDPDVIALQILMRALSSPPF--KNYQIWWSLADSK-YAGTALLVKKCFQPKKV 119
F +F + D D+ LQ + + + +NY +W+ A+ K Y+GTA+ K+ +P V
Sbjct: 5 FMDFFDSVDADIFCLQEIKLSEGQIEWNKENYYSYWNYAEKKGYSGTAVFSKE--KPLSV 62
Query: 120 SFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ 179
+ + +++ +GRVI EFE FY++ Y PN+ + E + R KW+ + F+
Sbjct: 63 KYGI--GIDEHDHEGRVITLEFENFYMVTVYTPNS--QRELTRLEYRMKWEDDFRNFLND 118
Query: 180 C-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAI 238
KP++ GD+NV+H+EID+ +P K + GFT ER++ +
Sbjct: 119 LRKTKPVVVTGDMNVAHKEIDLKNP---------------KTNRKNAGFTDEERQKMTEL 163
Query: 239 LKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEM 296
L G ID +R+ + D++ +SW + + K R K RIDYF+ S+EL+DR+I+ E+
Sbjct: 164 LDSG-FIDTFRYFY--PDVEQKYSW-WSYMFKSREKNAGWRIDYFLASKELEDRLISAEI 219
Query: 297 QGHGIELEGFYGSDHCPVSL 316
+ GSDHCP+ L
Sbjct: 220 HDKVL------GSDHCPIEL 233
>gi|323490286|ref|ZP_08095501.1| exodeoxyribonuclease III [Planococcus donghaensis MPA1U2]
gi|323395956|gb|EGA88787.1| exodeoxyribonuclease III [Planococcus donghaensis MPA1U2]
Length = 251
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 138/281 (49%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L +K F +F T + DV LQ L Y +W+ A
Sbjct: 1 MKLISWNVNGLRAVMKKG---FMDFFTEVNADVFCLQEIKLQEGQIEMDLPGYYTYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ K+ +P V + L L + +GR+I EF+++Y++ Y PN+ +
Sbjct: 58 HKKGYSGTAIFTKQ--KPVAVQYGLGLEEL--DTEGRIITLEFDSYYVITVYTPNS--QH 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R W++ I FV KP++ CGDLNV+HEEID+ +P+
Sbjct: 112 GLLRLDYRLLWEEAILSFVKTLDNHKPVLLCGDLNVAHEEIDLKNPK------------A 159
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
NK++ GFT ER + L+ G +D +R+ + E++ + WS + + R
Sbjct: 160 NKKN---SGFTPEERSKMTQFLESG-FVDTFRYFYPEEEGHYSW-WSYRSNCREKNVGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S+ L E+Q I + +GSDHCPV L++
Sbjct: 215 IDYFLASQRL-----VPELQNAKIH-KDIWGSDHCPVELQI 249
>gi|310659330|ref|YP_003937051.1| exodeoxyribonuclease III [[Clostridium] sticklandii]
gi|308826108|emb|CBH22146.1| exodeoxyribonuclease III [[Clostridium] sticklandii]
Length = 250
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 86/282 (30%), Positives = 145/282 (51%), Gaps = 38/282 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N + VK + E+ + + + D+ +Q L +Y+ +W+ A
Sbjct: 1 MKLISWNVNGIRACVKKGFLEYFDEV---EADIFCIQETKLQEGQIDLMLNDYEQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K +P V++ ++ ++ +GRVI E++ FYL+N Y PN +
Sbjct: 58 EKKGYSGTAVFTK--IKPISVAYGIDIE--HHDTEGRVITLEYDNFYLVNVYTPNA--QP 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ + R +W+ + ++ KP+I CGDLNV+H EID+ +P
Sbjct: 112 KLARLEYRMQWEDDFRRYLNDLDEKKPVIVCGDLNVAHNEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKE-KDMDCGFSWSGNPIGKYRGKRM 276
K + PGF+ ER +F +L G ID++RF + + +M +S+ N G
Sbjct: 158 -KSNRKNPGFSDEERGKFTNLLDSG-FIDSFRFFYPDATEMYTWWSYRFNARENNAG--W 213
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF VS +LK+ E++ I ++ GSDHCPV LE+
Sbjct: 214 RIDYFCVSNKLKN-----ELKNAEIHMD-ILGSDHCPVVLEI 249
>gi|365843219|ref|ZP_09384168.1| exodeoxyribonuclease III [Flavonifractor plautii ATCC 29863]
gi|364573045|gb|EHM50567.1| exodeoxyribonuclease III [Flavonifractor plautii ATCC 29863]
Length = 250
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 89/285 (31%), Positives = 138/285 (48%), Gaps = 44/285 (15%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
++ VTWN N L + F +F D DV+ LQ L + Y+++W+ A
Sbjct: 1 MRLVTWNVNGLRACLGKG---FLDFFQRVDADVVCLQETKLQPDQIALELPGYRLFWNSA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ + +P V+ + A +E GRVI AEF+ F+L+ Y PN +
Sbjct: 58 EKKGYSGTAVFTR--VEPLSVTCGIGLDAHDHE--GRVITAEFDGFFLVCCYTPNA--QN 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R +W+ + ++++ K P++ CGDLNV+HEEID+ +P
Sbjct: 112 ELARIDYRMQWEDDFRAYLMELDKKKPVVLCGDLNVAHEEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
+ + G GF+ ER + +L G D +R L+ ++ + WS + R
Sbjct: 158 -RSNRGNAGFSDQERGKMTELLSSG-FTDTFRALYPDRTGAYTW-WSYRFNARKNNAGWR 214
Query: 278 IDYFIVSEEL----KDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYFIVS+ L +D II E++ GSDHCPV L L
Sbjct: 215 IDYFIVSDRLLPRVRDNIIHAEVE----------GSDHCPVELVL 249
>gi|335045714|ref|ZP_08538737.1| exodeoxyribonuclease III [Oribacterium sp. oral taxon 108 str.
F0425]
gi|333759500|gb|EGL37057.1| exodeoxyribonuclease III [Oribacterium sp. oral taxon 108 str.
F0425]
Length = 251
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 139/281 (49%), Gaps = 39/281 (13%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLAD 100
K ++WN N L + N F D D+ LQ L Y +W+ A
Sbjct: 3 KLISWNVNGLRAVMGKN---FMEDFRKLDADIFCLQETKLQAGQIELDLPGYFQYWNYAV 59
Query: 101 SK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEE 159
K Y+GTA+ K+ +P VS+ + +++ +GRVI AEF+ FYL+ Y PN+ + E
Sbjct: 60 KKGYSGTAIFTKE--EPISVSYGI--GVEEHDQEGRVITAEFKDFYLITVYVPNS--QGE 113
Query: 160 ENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPN 218
R +++ ++L K P+++CGDLNV+HEEID+ +P+
Sbjct: 114 LKRLPYRMEFEDAFLSYILNLEKKKPVVYCGDLNVAHEEIDLKNPD-------------- 159
Query: 219 KEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMR 277
+ GF+ ER +F +L G L D++R+ + EK+ +S WS + R R
Sbjct: 160 -TNHLSAGFSDEERAKFSRVLDSGYL-DSFRYFYPEKE---EYSWWSYRTKARERNVGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+VS++L+ ++ + + + GSDHCPV L L
Sbjct: 215 IDYFVVSKKLEKKLHSASIHTEIM------GSDHCPVELIL 249
>gi|392947967|ref|ZP_10313585.1| Exodeoxyribonuclease III [Lactobacillus pentosus KCA1]
gi|392436819|gb|EIW14725.1| Exodeoxyribonuclease III [Lactobacillus pentosus KCA1]
Length = 254
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 84/281 (29%), Positives = 132/281 (46%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L VK+ F + D D +Q L F YQ +W+ A
Sbjct: 1 MKLISWNVNGLRAAVKHG---FIDIFNEQDADFFCVQETKLQAGQIDLDFPGYQQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K P V++ + +++ +GRVI E+ +Y+L Y PN+G
Sbjct: 58 ERKGYSGTAIFTKHT--PLNVTYGI--GVPEFDTEGRVITLEYADYYVLTCYTPNSG--G 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R+ W+ ++ S KPLI+CGDLNV+HE ID+ +
Sbjct: 112 ELKRLDYRQHWEDAFLTYINSLSANKPLIFCGDLNVAHENIDLKNW-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
+ + GFT ER +F +L G D +R + ++ D WS + R
Sbjct: 158 -RSNHHSAGFTDEERGKFDRLLANG-YTDTFRHFYPDQ-TDIYSWWSYRGHARDNNSGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYFI S++L +++ + L +GSDHCPV L++
Sbjct: 215 IDYFITSQQLDGQLLNARI------LNDVFGSDHCPVELDI 249
>gi|198276716|ref|ZP_03209247.1| hypothetical protein BACPLE_02915 [Bacteroides plebeius DSM 17135]
gi|198270241|gb|EDY94511.1| exodeoxyribonuclease III [Bacteroides plebeius DSM 17135]
Length = 252
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/281 (29%), Positives = 136/281 (48%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L F + T D D LQ + F+ Y +W+ A
Sbjct: 2 IKLISWNVNGLRACCDKG---FRDIFTQLDADFFCLQETKMQEGQLDLSFEGYTSYWNYA 58
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K QP +V++ L +++ +GRVI E E F+L+ Y PN+ ++
Sbjct: 59 EKKGYSGTAIFTKH--QPLQVTYGLGID--EHDHEGRVITLEMEKFFLVTVYTPNS--QD 112
Query: 159 EENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R WD + ++ + KP++ CGDLNV+H+EID+ +P+ ++N
Sbjct: 113 GLKRLDYRMTWDDDFRAYLQKLDQSKPVLVCGDLNVAHKEIDLKNPK---TNRMNA---- 165
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
GFT ER++F +L G ID +R+ + E+ + WS + + R
Sbjct: 166 --------GFTDQEREKFQLLLDAG-FIDTFRYFYPEQTNIYSW-WSYRFKAREKNAGWR 215
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S L D++ ++ +GSDHCPV + +
Sbjct: 216 IDYFLASASLADKLKEAKIHTE------IFGSDHCPVEVTV 250
>gi|16082631|ref|NP_394956.1| exonuclease III [Thermoplasma acidophilum DSM 1728]
Length = 250
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 92/285 (32%), Positives = 136/285 (47%), Gaps = 49/285 (17%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPD---VIALQILMRALSSPPFKNYQIWWSLA 99
KF++WN N L VKN ++ F D IALQ +S P + Y + + L
Sbjct: 4 KFLSWNVNGLRAAVKNG------AVSVFKQDDYFGIALQETKADSTSVPEEMYHLGYYLY 57
Query: 100 DS-----KYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNN 154
++ Y+GT LV++ +P VS+ E +GR++ EF+ FY +N Y PN
Sbjct: 58 NNPAKKKGYSGTMSLVRE--KPIDVSYGFEN------EEGRILNLEFDKFYFINVYFPNA 109
Query: 155 GWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNG 213
+ + +D++ E+ + KPLI CGD NV+HEEID++ P
Sbjct: 110 --QHGLTRLDMKLDFDEKFLEYSNELRKKKPLIICGDFNVAHEEIDIARP---------- 157
Query: 214 YVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRG 273
K++ GFT ER L G +D YR KE +S+ N K G
Sbjct: 158 -----KDNENNAGFTKQERDWMTKFLDSG-YVDTYRIFMKEGGHYSWWSYRFNARAKNIG 211
Query: 274 KRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF+VS++++DR+ E+ LE GSDH PV+LE+
Sbjct: 212 --WRIDYFVVSDDIRDRVKKAEI------LETVTGSDHAPVTLEV 248
>gi|336399679|ref|ZP_08580479.1| exodeoxyribonuclease III Xth [Prevotella multisaccharivorax DSM
17128]
gi|336069415|gb|EGN58049.1| exodeoxyribonuclease III Xth [Prevotella multisaccharivorax DSM
17128]
Length = 267
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 92/294 (31%), Positives = 134/294 (45%), Gaps = 46/294 (15%)
Query: 42 LKFVTWNANSLLLRVKNNWPE--------FSNFITTFDPDVIALQ--ILMRALSSPPFKN 91
+KF++WN N L VK + F + D D LQ + + F
Sbjct: 1 MKFISWNVNGLRACVKPKTDDEGNVKSKGFEAYFKDLDADFFCLQETKMQKGQLDLQFDG 60
Query: 92 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 150
YQ +W+ A+ K Y+GTA+ + P V + + +E GRVI E FYL+ Y
Sbjct: 61 YQSYWNYAERKGYSGTAIYTRHT--PLSVVYGMGIEEHGHE--GRVITMEMPEFYLVCVY 116
Query: 151 APNNGWKEEENSFQRR----RKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEF 205
PN+ E RR +W+ + ++ K P+I CGD+NV+HEEID+ +P+
Sbjct: 117 TPNSQEAETTGGKPRRLPYRMQWEDDFRAYLQALDQKKPVIVCGDMNVAHEEIDIKNPK- 175
Query: 206 FAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WS 264
LN GFT ER + +L G D++R LH + + +S WS
Sbjct: 176 --TNHLNA------------GFTDEERDKMTTLLDSG-FTDSFRALHPD---EVTYSWWS 217
Query: 265 GNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
+ RIDYF+ S+ L+D I G I E YGSDHCP+ L+L
Sbjct: 218 YRFRSREHNTGWRIDYFLTSDRLRDHIT-----GASIHTE-IYGSDHCPIELDL 265
>gi|225016166|ref|ZP_03705370.1| hypothetical protein CLOSTMETH_00081 [Clostridium methylpentosum
DSM 5476]
gi|224951039|gb|EEG32248.1| hypothetical protein CLOSTMETH_00081 [Clostridium methylpentosum
DSM 5476]
Length = 253
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/283 (30%), Positives = 136/283 (48%), Gaps = 36/283 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + F +F D DV +Q + + + + Y+ +W A
Sbjct: 1 MKLISWNVNGLRACLNKG---FLDFFQEADADVFCVQETKMQQGQAELALEGYEQFWCSA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ + P V++ + +++ +GRVI EFE F L+N Y PN +
Sbjct: 58 EKKGYSGTAVFTR--IPPVSVAYGI--GIPEFDTEGRVITVEFEKFTLINVYTPNA--QR 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R +W+ + ++L+ KP++ CGDLNV+H EID+ +
Sbjct: 112 GLTRIDFRMQWEDAFRVYLLRLQESKPVVVCGDLNVAHNEIDLKN--------------- 156
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + G GF+ ER + +L+ G L D++R+L+ EK C WS + R
Sbjct: 157 YKTNRGNAGFSDEERGKMTELLQSG-LTDSFRYLYPEK-TGCYTWWSYMFNARANNAGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 320
IDYF+ S+ LKD+I + GSDHCP+ L L E
Sbjct: 215 IDYFLTSDVLKDQI------EDSVIYSEVLGSDHCPIGLFLRE 251
>gi|417838439|ref|ZP_12484677.1| exodeoxyribonuclease III [Lactobacillus johnsonii pf01]
gi|338761982|gb|EGP13251.1| exodeoxyribonuclease III [Lactobacillus johnsonii pf01]
Length = 275
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 87/302 (28%), Positives = 136/302 (45%), Gaps = 52/302 (17%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFS------NFITTFDPDVIALQILMRALSSPP------- 88
++ ++WN +SL + ++ P N I D D+IA+Q + P
Sbjct: 1 MRLISWNIDSLNAALTSDSPRAQLTRSVLNTIKEKDADIIAIQETKLRSTGPTKKHQEVL 60
Query: 89 ---FKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVSFSL-EKTALKYEPDGRVILAE 140
F NY W A YAGT L K P+ ++ + YE GR++ E
Sbjct: 61 AEMFPNYDYVWRSSEEPARKGYAGTMFLYKNTLTPEVTKPAIGAPDTMDYE--GRILTLE 118
Query: 141 FETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEID 199
F+ +Y+ Y PN+G E + R+ WD++ E++ + GKP+I GD NV+H ID
Sbjct: 119 FDNYYVTQVYTPNSG--NELKRLEDRQIWDEKYTEYLQKLDKGKPVIASGDYNVAHTPID 176
Query: 200 VSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDC 259
+ HPE + GFT ER+ F +LK G D +R +H +++
Sbjct: 177 LKHPE---------------NNHHNAGFTDEERQDFDKLLKLG-FTDTFRKVH--GNIEG 218
Query: 260 GFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLE 317
+SW + K RIDY+IVS+ + D++ EM G DHCP+ LE
Sbjct: 219 VYSWWAQRVRTSKANNSGWRIDYYIVSDRIADQVTKSEMIDTGER------KDHCPIMLE 272
Query: 318 LS 319
++
Sbjct: 273 IN 274
>gi|47213945|emb|CAF94476.1| unnamed protein product [Tetraodon nigroviridis]
Length = 320
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 91/313 (29%), Positives = 157/313 (50%), Gaps = 48/313 (15%)
Query: 17 PALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIA 76
P L D T+ + N+K +WN + L VK + +++ +PDV+
Sbjct: 45 PILYEDPPDKMTSRDGRDANTK-----ITSWNVDGLRAWVKK---KGLDWVREENPDVLC 96
Query: 77 LQ-------ILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKVSFSLEKTA 127
LQ L ++S P Y+ +W+ +D K Y+G A+L K +P KV++ + K
Sbjct: 97 LQETKCAEKSLPADITSMPEYPYK-YWAGSDDKEGYSGVAMLCKT--EPVKVTYGIGKE- 152
Query: 128 LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLI 186
+++ +GRVI AEF F+L+ Y PN+G R+ WD + ++ + KP++
Sbjct: 153 -EHDKEGRVITAEFPGFFLVTAYVPNSG--RGLVRLDYRKTWDADFRTYLSELDVQKPVV 209
Query: 187 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLID 246
CGDLNV+H+EID+ +P+ NK++ GFT ER+ FG +L+ G +D
Sbjct: 210 LCGDLNVAHQEIDLKNPK------------GNKKN---AGFTAEEREGFGQLLEAG-FVD 253
Query: 247 AYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 306
++R L+ E+ F W+ + + R+DYF++S L + +++
Sbjct: 254 SFRELYPEQSHAYSF-WTYMMNARDKNVGWRLDYFVLSSSLLPGLCDSKIRNQ------V 306
Query: 307 YGSDHCPVSLELS 319
GSDHCP++L ++
Sbjct: 307 KGSDHCPITLHMA 319
>gi|451821030|ref|YP_007457231.1| exodeoxyribonuclease ExoA [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
gi|451787009|gb|AGF57977.1| exodeoxyribonuclease ExoA [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
Length = 252
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 87/282 (30%), Positives = 139/282 (49%), Gaps = 38/282 (13%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLAD 100
K ++WN N L F +F D D+ +Q L + Y+ +W+ A+
Sbjct: 3 KLISWNVNGLRACAGKG---FLDFFKEVDADIFCIQESKLQEGQIDLDLEGYKSYWNYAE 59
Query: 101 SK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEE 159
K Y+GTA+ K+ +P V + + +++ +GRVI AE++ FYL+ Y PN+ K+
Sbjct: 60 KKGYSGTAVFTKE--EPISVKKGIGIS--EHDNEGRVITAEYDDFYLVTVYTPNS--KQA 113
Query: 160 ENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPN 218
R W+ ++++ + KP+I CGDLNV+H+EID+ +P
Sbjct: 114 LERLDYRMVWEDVFRKYLKELEEKKPVIVCGDLNVAHKEIDLKNP--------------- 158
Query: 219 KEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMR 277
K + GFT ER + +L+ G ID YR H D++ +S WS + R
Sbjct: 159 KANRRNAGFTDEERDKMSELLEAG-FIDTYR--HFYPDVEGVYSWWSYRFNARANNAGWR 215
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
IDYF+ SE LKD++ A ++ + GSDHCPV L ++
Sbjct: 216 IDYFLTSESLKDKLEAAKIHTEVM------GSDHCPVELVIN 251
>gi|366166303|ref|ZP_09466058.1| exodeoxyribonuclease III [Acetivibrio cellulolyticus CD2]
Length = 251
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 84/281 (29%), Positives = 137/281 (48%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
LK ++WN N + + F++F D D+ +Q + PF+ Y +W+ A
Sbjct: 2 LKMISWNVNGIRAVMGKG---FTDFFQKEDADIFCIQETKVQEGQIEIPFEGYYKYWNYA 58
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+G A+ K +P VS+ + +++ +GRVI EF+ +Y++ Y PN+ +
Sbjct: 59 EKKGYSGVAVFTK--IKPITVSYGI--GIEEHDKEGRVITLEFDEYYVVTVYTPNS--QR 112
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R KW+ ++ KP+I CGDLNV+H+EID+ +P+
Sbjct: 113 GLTRLHYRMKWEDDFLSYLKSLERYKPVIVCGDLNVAHKEIDLKNPQ------------S 160
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
NK++ GFT ER +F + + G ID +R+ + ++ + WS + R
Sbjct: 161 NKKN---AGFTEEERSKFDSYVNNG-FIDTFRYFYPDR-IGVYTWWSYMFNSRQNNAGWR 215
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYFIVSE +KDR+ + GSDHCPV + L
Sbjct: 216 IDYFIVSERIKDRL------KDALVYSEITGSDHCPVGILL 250
>gi|390345498|ref|XP_789515.3| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like
[Strongylocentrotus purpuratus]
Length = 342
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 93/311 (29%), Positives = 160/311 (51%), Gaps = 39/311 (12%)
Query: 16 KPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVI 75
KP ++ K+ T E+ + LK WN + +K +++T PD+
Sbjct: 63 KPEVAEEPKEEVYTTDRKSESGEACNLKISAWNVGGMKAWIKKGG---IDYLTKESPDIF 119
Query: 76 -ALQILMRALSSPP---FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKY 130
A + + A PP +Y I ++ A+ K Y+G AL KK +P V+ + ++
Sbjct: 120 FAQETKIDATKPPPEADLDDYHITYNAAEKKGYSGVALFSKK--EPLSVTKGM--GIEEH 175
Query: 131 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCG 189
+ +GR+I AE+++FY + Y PN+ K + R++WDK ++ + K P+I CG
Sbjct: 176 DKEGRLITAEYDSFYFVGVYVPNSSRKLVRLDY--RQEWDKDFHAYLKKLDAKKPVICCG 233
Query: 190 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 249
D+NV+HEEID+ +P+ N+ PGFT ER+ F ++L G +D++R
Sbjct: 234 DMNVAHEEIDLKNPK------------SNRNK--TPGFTDQEREGFTSLLDMG-FVDSFR 278
Query: 250 FLH-KEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 308
L+ +E D +++ GN K G R+DY ++S+ L ++ C+ Q + L+ F G
Sbjct: 279 HLYPEEADAYSFWTYMGNCRAKNVG--WRLDYGVISKALVPKL--CDNQ---MRLQTF-G 330
Query: 309 SDHCPVSLELS 319
SDHCP+ + L+
Sbjct: 331 SDHCPMVVSLA 341
>gi|194466723|ref|ZP_03072710.1| exodeoxyribonuclease III Xth [Lactobacillus reuteri 100-23]
gi|194453759|gb|EDX42656.1| exodeoxyribonuclease III Xth [Lactobacillus reuteri 100-23]
Length = 253
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 85/283 (30%), Positives = 140/283 (49%), Gaps = 44/283 (15%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTF---DPDVIALQILMRALSSPPFK--NYQIWW 96
+KF++W+ N L + + F+ F D D LQ PF+ NY +W
Sbjct: 1 MKFISWSVNGLKSAINHG------FVEDFKRQDADFFCLQRTRLDKGEEPFQIPNYYQYW 54
Query: 97 SLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNG 155
+ A+ K Y+GTA+ K ++P+ V + + + ++ +GR+I E+ FYL++ Y P +G
Sbjct: 55 NYAEKKGYSGTAIFTK--YKPENVIYGMNNSI--FDKEGRLITLEYPNFYLIDVYVPVSG 110
Query: 156 WKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY 214
E+ R WD+ ++V S KP+I GD++V+++ ID++ P
Sbjct: 111 --EKLQHLDYRLDWDRAFLDYVTNLQSSKPVIIGGDMSVAYQPIDLAEP----------- 157
Query: 215 VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRG 273
ED + GFT ER FG +L G L D +R+LH ++ ++ WS + R
Sbjct: 158 ----TEDHHKAGFTKQERSDFGKLLDAG-LTDTFRYLH--PNLHGAYTWWSYRYDARERN 210
Query: 274 KRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
R+DYF+VS+ K+RI ++ L GS HCP+ L
Sbjct: 211 VGWRLDYFLVSDVWKERIEEAKI------LSDVKGSSHCPIEL 247
>gi|309775417|ref|ZP_07670420.1| exodeoxyribonuclease III [Erysipelotrichaceae bacterium 3_1_53]
gi|308916806|gb|EFP62543.1| exodeoxyribonuclease III [Erysipelotrichaceae bacterium 3_1_53]
Length = 254
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 85/283 (30%), Positives = 138/283 (48%), Gaps = 40/283 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQIL-----MRALSSPPFKNYQIWW 96
++ V+WN N + ++ F +F D D+ +Q + +P + Y
Sbjct: 1 MRLVSWNVNGIRACMQKG---FMDFFNEIDADIFCIQETKMQPGQLEIETPLYHQYMN-- 55
Query: 97 SLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 156
S Y+GT + K+ +P VS+ L +++ +GRVI E+E FYL+ Y PN+
Sbjct: 56 SAEKKGYSGTMVFSKQ--EPIHVSYGL--GIEEHDHEGRVITCEYEDFYLVCVYTPNS-- 109
Query: 157 KEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 215
K+ R +W+ + ++ + + K ++ CGDLNV+H+EID+ +P
Sbjct: 110 KDGLLRLDYRMEWEDAFRTYLHKLNETKSVLVCGDLNVAHKEIDLKNP------------ 157
Query: 216 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 275
K + GFT ER + +L G ID+YR+L+ E++ + WS + +
Sbjct: 158 ---KTNRRNAGFTDEERNKMSVLLDSG-FIDSYRYLYPEQEGVYSW-WSYRFKAREKNAG 212
Query: 276 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF+VSE+ KD I ++ YGSDHCPVSLE
Sbjct: 213 WRIDYFLVSEDAKDGIREAKIH------TDIYGSDHCPVSLEF 249
>gi|414085431|ref|YP_006994142.1| exodeoxyribonuclease III [Carnobacterium maltaromaticum LMA28]
gi|412999018|emb|CCO12827.1| exodeoxyribonuclease III [Carnobacterium maltaromaticum LMA28]
Length = 251
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 86/283 (30%), Positives = 135/283 (47%), Gaps = 38/283 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L VK F + D D LQ L Y +W+ A
Sbjct: 1 MKLISWNVNGLRAVVKKG---FIDIFNQLDADFFCLQETKLQADQIDLELPGYHQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K +P V + L K +++ +GRVI + +Y++ Y PN+ +
Sbjct: 58 EKKGYSGTAIFTKH--EPDDVFYGLGKE--EHDQEGRVITLSYPDYYVVTCYTPNS--QN 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R W++ ++ Q KP+I CGDLNV+HE ID+ +
Sbjct: 112 ELKRLDYRMTWEEDFLAYLNQLDAEKPVIVCGDLNVAHENIDIKNW-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
K + GFT ER +F L+ G ID +R+ + E ++ +S WS +
Sbjct: 158 -KTNRKNAGFTDEERGKFTEFLENG-YIDTFRYFYPE--LEGAYSWWSYRFNARANNAGW 213
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
RIDYFIVSE L++++++ + L GSDHCPV L+++
Sbjct: 214 RIDYFIVSERLQEKLVSAAI------LNEVVGSDHCPVELQIN 250
>gi|118375590|ref|XP_001020979.1| exodeoxyribonuclease III family protein [Tetrahymena thermophila]
gi|89302746|gb|EAS00734.1| exodeoxyribonuclease III family protein [Tetrahymena thermophila
SB210]
Length = 396
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 91/291 (31%), Positives = 135/291 (46%), Gaps = 45/291 (15%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ---------ILMRALSSPPFKNY 92
+K WN N L +K + +I +PD++ L I + P Y
Sbjct: 117 IKIACWNVNGLRAVLKR--EDLQKYIKQENPDILCLNETKIDESNFIKEKVYKDIPSGYY 174
Query: 93 QIW-WSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 150
Q W + + K Y+G ++ K+ K +S ++E +GRV+ AEF+ FYL+ Y
Sbjct: 175 QYWNFCIPPIKGYSGVSIFSKE----KVISIKKGIDIAEHENEGRVLTAEFDKFYLVVVY 230
Query: 151 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 209
PN G + + R +DK Q ++ Q K +I CGDLNV+H+EID+++P
Sbjct: 231 VPNAGSELVRLDY-RVNSFDKDFQNYLNQLKLKKNVILCGDLNVAHQEIDIANP------ 283
Query: 210 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPI 268
K + PGFTI ER F L+ G ID +RFL+ E +S WS
Sbjct: 284 ---------KSNRNSPGFTIEERNSFSKFLESG-WIDTFRFLYPET---IKYSWWSVRTK 330
Query: 269 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
+ RIDYF+V++E K I + + YGSDHCPV L+
Sbjct: 331 ARESNIGWRIDYFVVNKEFKSSIKDSMINNN------IYGSDHCPVEFILN 375
>gi|359412352|ref|ZP_09204817.1| exodeoxyribonuclease III Xth [Clostridium sp. DL-VIII]
gi|357171236|gb|EHI99410.1| exodeoxyribonuclease III Xth [Clostridium sp. DL-VIII]
Length = 252
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 85/282 (30%), Positives = 142/282 (50%), Gaps = 38/282 (13%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLAD 100
K ++WN N L V + E+ D D+ +Q L + Y+ +W+ A+
Sbjct: 3 KLISWNVNGLRACVNKGFLEY---FKEADADIFCIQESKLQEGQIDLKLEGYKDYWNYAE 59
Query: 101 SK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEE 159
K Y+GTA+ K+ +P V + + +++ +GRVI EF+ FYL+N Y PN+ K+
Sbjct: 60 KKGYSGTAVFTKE--EPISVKNGIGIS--EHDTEGRVITLEFKEFYLVNVYTPNS--KQG 113
Query: 160 ENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPN 218
R W+ ++++ + KP+I CGDLNV+HE+ID+ +P
Sbjct: 114 LERLDYRMVWEDVFRKYLKELEEKKPVIICGDLNVAHEDIDLKNP--------------- 158
Query: 219 KEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLH-KEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GFT ER + +L+ G ID YR+ + + + +S+ N G G R
Sbjct: 159 KANRKNAGFTDEERNKISELLEAG-FIDTYRYFYPNTEGVYSWWSYRFNARGNNAG--WR 215
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
IDYF+ SE LKD+++ ++ + + GSDHCPV + ++
Sbjct: 216 IDYFLASESLKDKLVDAKIHMNVM------GSDHCPVEVMVN 251
>gi|420437930|ref|ZP_14936910.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-28]
gi|393050857|gb|EJB51811.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-28]
Length = 243
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 83/260 (31%), Positives = 129/260 (49%), Gaps = 33/260 (12%)
Query: 63 FSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKV 119
F +F + D DV +Q + + ++ FK Y +W+ A K Y+G KK +P V
Sbjct: 12 FMDFFNSVDADVFCIQESKMQQEQNTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSV 69
Query: 120 SFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ 179
S+ + +++ +GRVI EFE+FYL+N Y PN+ ++ R W+ ++F+
Sbjct: 70 SYGI--NIEEHDKEGRVITCEFESFYLVNVYTPNS--QQALFRLSYRMSWEVEFKKFLKA 125
Query: 180 CS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAI 238
KP+I CGDLNV+H EID+ +P K + GF+ ER++F +
Sbjct: 126 LELKKPVIVCGDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSEL 170
Query: 239 LKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQG 298
L G ID +R+ + K+ + WS + + RIDYF+ S LK R+
Sbjct: 171 LNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------K 222
Query: 299 HGIELEGFYGSDHCPVSLEL 318
+ + GSDHCPV LEL
Sbjct: 223 DALIYKDILGSDHCPVGLEL 242
>gi|229366136|gb|ACQ58048.1| DNA-apurinic or apyrimidinic site lyase [Anoplopoma fimbria]
Length = 310
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 91/289 (31%), Positives = 153/289 (52%), Gaps = 45/289 (15%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ-------ILMRALSSPPFKNYQI 94
+K +WN + L VK N +++ PDV+ LQ L ++S P ++
Sbjct: 55 MKITSWNVDGLRAWVKKN---GLDWVREEAPDVLCLQETKCSEKALPAEITSMPEYPHK- 110
Query: 95 WWSLADSK--YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAP 152
+W+ +D K Y+G A+L K +P KV++ + K +++ +GRVI AEF FYL+ TY P
Sbjct: 111 YWAASDEKQGYSGVAMLCKT--EPLKVTYGIGKE--EHDKEGRVITAEFPNFYLVTTYVP 166
Query: 153 NNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKL 211
N+ + R+ WD+ + ++ + KPL+ CGDLNV+H+EID+ +P+
Sbjct: 167 NS--SKGLVRLDYRKTWDEDFRAYLSELDMQKPLVLCGDLNVAHQEIDLKNPK------- 217
Query: 212 NGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGF-SWSGNPIGK 270
NK++ GFT+ ER+ FG +L G D++R L+ E+ F ++ N GK
Sbjct: 218 -----GNKKN---AGFTVEEREGFGQLLGSG-FADSFRELYPEQANAYTFWTYMMNSRGK 268
Query: 271 YRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
G R+DYF++S L + +++ + GSDHCP++L ++
Sbjct: 269 NVG--WRLDYFLLSSSLLPGLCDSKIRSKAL------GSDHCPITLHIA 309
>gi|410622567|ref|ZP_11333400.1| exodeoxyribonuclease III [Glaciecola pallidula DSM 14239 = ACAM
615]
gi|410157921|dbj|GAC28774.1| exodeoxyribonuclease III [Glaciecola pallidula DSM 14239 = ACAM
615]
Length = 255
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 84/288 (29%), Positives = 144/288 (50%), Gaps = 45/288 (15%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ-------ILMRALSSPPFKNYQI 94
+K V+WN N + +K +F + + + DV+ LQ ++ AL K Y +
Sbjct: 1 MKLVSWNVNGVRAAIKK---DFFQSLASLECDVLCLQETKAQDDQVIEALCD--LKGYHV 55
Query: 95 WWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPN 153
+ + A K Y+GT+++ + K + + + +++ +GRV+ AEF+ FYL+ Y PN
Sbjct: 56 FTNSAIKKGYSGTSIITR----VKPIDVTRDIGIEEHDQEGRVLCAEFDAFYLVTVYTPN 111
Query: 154 NGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLN 212
+G + S+ R +WD +V Q KP++ CGDLNV+H +ID++ P+
Sbjct: 112 SGDSLKRLSY--RTQWDADFLSYVKQLEALKPVVVCGDLNVAHRDIDIARPK-------- 161
Query: 213 GYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKY 271
PN G+T E +++ G +D +R L + +S WS +
Sbjct: 162 ----PNYNK--SAGYTQKEIDGIDSLIAAG-YVDTFRHLFPDT---VKYSWWSYRAGARE 211
Query: 272 RGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
R R+DYF+VS +LK++I ++ +GSDHCPVS++LS
Sbjct: 212 RNVGWRLDYFLVSHKLKEQISGADIH------NDIHGSDHCPVSVQLS 253
>gi|295397847|ref|ZP_06807910.1| exodeoxyribonuclease III [Aerococcus viridans ATCC 11563]
gi|294973892|gb|EFG49656.1| exodeoxyribonuclease III [Aerococcus viridans ATCC 11563]
Length = 275
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 88/300 (29%), Positives = 131/300 (43%), Gaps = 50/300 (16%)
Query: 42 LKFVTWNANSLLLRVKNNWP------EFSNFITTFDPDVIALQILMRALSSPPFK----- 90
+K ++WN +SL + P E I PDVIA+Q + P K
Sbjct: 1 MKLISWNIDSLNAALTGASPRAELSREVLKMIREHQPDVIAIQETKLSAKGPTKKHLDII 60
Query: 91 -----NYQIWWSL----ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEF 141
+Y++ W A YAGT L KK + P+ V+F + +GR+I EF
Sbjct: 61 EADVPDYKVVWVSSVEPARKGYAGTMFLYKKDYTPE-VTFPQIGAPTTMDYEGRMITLEF 119
Query: 142 ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDV 200
FY+ N Y PN G + R+ WD + ++ K P+I CGD NV+H EID+
Sbjct: 120 TDFYVTNVYTPNAG--SALARLEDRQVWDVQYANYLADLDAKKPVIACGDFNVAHTEIDL 177
Query: 201 SHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCG 260
+HP K + GFT ER F +L G D +R +H D++
Sbjct: 178 AHP---------------KNNHFSAGFTDEERAGFTNLLNRG-FTDTFRHIH--GDVEGV 219
Query: 261 FSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
++W + K RIDY++VS+ + D++ EM G DH P+ LE+
Sbjct: 220 YTWWAQRVKTSKINNSGWRIDYWLVSDRIADKVQKSEMLDSGTR------QDHTPILLEI 273
>gi|401680683|ref|ZP_10812594.1| exodeoxyribonuclease III [Veillonella sp. ACP1]
gi|400218294|gb|EJO49178.1| exodeoxyribonuclease III [Veillonella sp. ACP1]
Length = 251
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 87/285 (30%), Positives = 138/285 (48%), Gaps = 44/285 (15%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQIL-----MRALSSPPFKNYQIWW 96
+K ++WN N L V F + D D+ LQ L P ++ Q W
Sbjct: 1 MKLISWNVNGLRAAVTKG---FIDSFNELDADIFCLQETKLQPHQIELELPGYE--QFWN 55
Query: 97 SLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 156
S Y+GTA+ + +P V+ + +++ +GRVI AEF+ FYL+ Y PN+
Sbjct: 56 SAVKKGYSGTAVFTR--IKPIAVTNGI--GIEEHDQEGRVITAEFDNFYLVCCYTPNS-- 109
Query: 157 KEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 215
+ E R W+ + ++L+ K P+I CGDLNV+H EID+ +P
Sbjct: 110 QRELARLDYRMAWEDAFRAYLLELDKKKPVILCGDLNVAHNEIDLKNP------------ 157
Query: 216 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 275
K + GF+ ER + +L+ G D +R+L+ D +SW + +GK R +
Sbjct: 158 ---KTNRKNAGFSDEERAKMTTLLESG-FTDTFRYLY--PDAVDEYSW-WSYMGKARDRN 210
Query: 276 M--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
+ RIDYFI S+ L D+I ++ + +GSDHCPV L++
Sbjct: 211 VGWRIDYFITSKRLDDKINEAKIH------QQIFGSDHCPVELDI 249
>gi|182416804|ref|ZP_02948195.1| exodeoxyribonuclease III [Clostridium butyricum 5521]
gi|237669009|ref|ZP_04528993.1| exodeoxyribonuclease III [Clostridium butyricum E4 str. BoNT E
BL5262]
gi|182379266|gb|EDT76765.1| exodeoxyribonuclease III [Clostridium butyricum 5521]
gi|237657357|gb|EEP54913.1| exodeoxyribonuclease III [Clostridium butyricum E4 str. BoNT E
BL5262]
Length = 254
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 84/282 (29%), Positives = 141/282 (50%), Gaps = 38/282 (13%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLAD 100
K ++WN N L VK F ++ D D+ +Q L + Y +W+ A+
Sbjct: 5 KLISWNVNGLRACVKKG---FLDYFNEMDADIFCVQETKLQEGQIDLELEGYYDYWNYAE 61
Query: 101 SK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEE 159
K Y+GTA+ K+ K +S + +++ +GRVI E++ F+L+N Y PN+ +++
Sbjct: 62 KKGYSGTAVFTKE----KPISVKMGLGIEEHDNEGRVITLEYDKFFLVNVYTPNS--QQK 115
Query: 160 ENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPN 218
+ R W+ + ++ KP+I CGDLNV+H+EID+ +P N
Sbjct: 116 LARLEYRMSWEDVFRNYLKDLEKNKPVILCGDLNVAHKEIDLKNP------------SSN 163
Query: 219 KEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMR 277
+++ GF+ ER + +L G D +R+ + D++ +S WS + R
Sbjct: 164 RKN---AGFSDEERSKMSELLNSG-FTDTFRYFY--PDIEGVYSWWSYRFNARANNAGWR 217
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
IDYFIVS+ L D++ ++ IE GSDHCPV LE++
Sbjct: 218 IDYFIVSQSLNDKLEDAKIHT-SIE-----GSDHCPVELEIN 253
>gi|420535388|ref|ZP_15033733.1| exodeoxyribonuclease III [Helicobacter pylori Hp M2]
gi|420539073|ref|ZP_15037392.1| exodeoxyribonuclease III [Helicobacter pylori Hp M5]
gi|393139673|gb|EJC40047.1| exodeoxyribonuclease III [Helicobacter pylori Hp M2]
gi|393146758|gb|EJC47083.1| exodeoxyribonuclease III [Helicobacter pylori Hp M5]
Length = 236
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 81/260 (31%), Positives = 131/260 (50%), Gaps = 33/260 (12%)
Query: 63 FSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKV 119
F +F + + DV +Q + + ++ FK Y +W+ A K Y+G KK +P V
Sbjct: 5 FMDFFNSVNADVFCIQESKMQQEQNTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSV 62
Query: 120 SFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ 179
S+ ++ +++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+
Sbjct: 63 SYGID--IKEHDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFRKFLKA 118
Query: 180 CS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAI 238
KP+I CGDLNV+H EID+ +P K + GF+ ER++F +
Sbjct: 119 LELKKPVIVCGDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNEL 163
Query: 239 LKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQG 298
L G ID +R+ + K+ + WS + + RIDYF+ S LK R+
Sbjct: 164 LNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------K 215
Query: 299 HGIELEGFYGSDHCPVSLEL 318
+ + GSDHCPV LEL
Sbjct: 216 DALIYKDILGSDHCPVGLEL 235
>gi|238018561|ref|ZP_04598987.1| hypothetical protein VEIDISOL_00388 [Veillonella dispar ATCC 17748]
gi|237865032|gb|EEP66322.1| hypothetical protein VEIDISOL_00388 [Veillonella dispar ATCC 17748]
Length = 251
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 84/287 (29%), Positives = 138/287 (48%), Gaps = 48/287 (16%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFI---------TTFDPDVIALQILMRALSSPPFKNY 92
+K ++WN N L V + E N + T PD I+L++ P ++ Y
Sbjct: 1 MKLISWNVNGLRAAVTKGFMESFNELDADIFCLQETKLQPDQISLEL-------PGYEQY 53
Query: 93 QIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAP 152
W S Y+GTA+ + +P V+ + +++ +GRVI AE++ FYL+ Y P
Sbjct: 54 --WNSAVKKGYSGTAVFTR--IKPLSVTNGI--GIEEHDQEGRVITAEYDNFYLVCCYTP 107
Query: 153 NNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKL 211
N+ + E + R W+ + ++L+ K P+I CGDLNV+H+EID+ +P
Sbjct: 108 NS--QRELARLEYRMAWEDAFRNYLLELDKKKPVILCGDLNVAHQEIDLKNP-------- 157
Query: 212 NGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKY 271
K + GF+ ER + +L G D +R L+ + + + WS +
Sbjct: 158 -------KTNRKNAGFSDEERAKMTELLGAG-FTDTFRHLYPDAIEEYSW-WSYMGKARE 208
Query: 272 RGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
R RIDYFI S+ L D+I ++ + +GSDHCPV L++
Sbjct: 209 RNTGWRIDYFITSKRLDDKIQEAKIH------QQIFGSDHCPVELDI 249
>gi|189460159|ref|ZP_03008944.1| hypothetical protein BACCOP_00795 [Bacteroides coprocola DSM 17136]
gi|189433149|gb|EDV02134.1| exodeoxyribonuclease III [Bacteroides coprocola DSM 17136]
Length = 253
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 85/282 (30%), Positives = 139/282 (49%), Gaps = 36/282 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L + E N D D LQ + F+ Y +W+ A
Sbjct: 3 MKLISWNVNGLRACCDKGFREIFN---ELDADFFCLQETKMQEGQLDLAFEGYTSYWNYA 59
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ + QP V++ L +++ +GRVI E E FYL+ Y PN+ ++
Sbjct: 60 EKKGYSGTAIFTRH--QPLSVTYGLGID--EHDHEGRVITLEMENFYLVTVYTPNS--QD 113
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R W++ ++++LQ KP++ CGDLNV+H+EID+ +P+ ++N
Sbjct: 114 GLKRLDYRMTWEEDFRKYLLQLDRQKPVLVCGDLNVAHKEIDLKNPK---TNRMNA---- 166
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
GFT ER++F +L G ID +R + ++ + WS + + R
Sbjct: 167 --------GFTDQEREKFQLLLDAG-FIDTFRHFYPTQENIYSW-WSYRFKAREKNAGWR 216
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
IDYF+ S + D+ +Q I E F GSDHCPV + ++
Sbjct: 217 IDYFLASSRIADK-----LQDAKIHTEIF-GSDHCPVEVTIN 252
>gi|148927710|ref|ZP_01811154.1| exodeoxyribonuclease III Xth [candidate division TM7 genomosp.
GTL1]
gi|147886940|gb|EDK72466.1| exodeoxyribonuclease III Xth [candidate division TM7 genomosp.
GTL1]
Length = 266
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 89/294 (30%), Positives = 135/294 (45%), Gaps = 43/294 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILM--RALSSPPFKNY-QIWWSL 98
+K +WN N + R N F F+ DPD++ LQ R + +Y + W S
Sbjct: 1 MKIYSWNVNGI--RAVVNKGAFQKFVKEHDPDILCLQETKAERGQAEIDLPHYIENWNSA 58
Query: 99 ADSKYAGTALLVKKCFQPKKVSFSLEKTALK---YEPD--------GRVILAEFETFYLL 147
Y+GTA+ K QP + + +K E D GRV+ AEFE FY++
Sbjct: 59 VKKGYSGTAIFSKT--QPLSIINGFPEDIIKKYKVEGDVYGDPNKEGRVMAAEFEDFYIV 116
Query: 148 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 206
Y PN+ +E R + WD +V Q KP+I+CGDLNV+H E D++ P+
Sbjct: 117 TVYTPNSK-RELTRLTLREKHWDPAFLAYVKQLEKTKPVIFCGDLNVAHTEDDLARPD-- 173
Query: 207 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 266
+ G+ GFT ER+ F L G +D +R + + + W+
Sbjct: 174 -------------TNHGEHGFTDEEREGFQKFLDAG-FVDTFRMFTPKGNGHYTW-WTHW 218
Query: 267 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 320
+ R RIDYF+VS LK ++ + ++ GSDHCP+S+EL +
Sbjct: 219 ANARARNVGWRIDYFLVSHALKSKVKSAKIHA------DVMGSDHCPISIELGK 266
>gi|116333326|ref|YP_794853.1| exonuclease III [Lactobacillus brevis ATCC 367]
gi|116098673|gb|ABJ63822.1| Exonuclease III [Lactobacillus brevis ATCC 367]
Length = 254
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 89/289 (30%), Positives = 139/289 (48%), Gaps = 44/289 (15%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTF---DPDVIALQ--ILMRALSSPPFKNYQIWW 96
+KF++WN N L VK F+ TF + D +Q L Y +W
Sbjct: 1 MKFISWNVNGLRAIVK------KGFVETFQELNADFFGIQETKLQAGQIELDLPGYYQYW 54
Query: 97 SLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNG 155
+ A+ K Y+GTAL K QP V + ++ A +++ +GR I E+ FY+L Y PN+G
Sbjct: 55 NYAERKGYSGTALFTKH--QPLNVIYGID--APEFDHEGRAITLEYPDFYVLTCYTPNSG 110
Query: 156 WKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY 214
+ F R W+ F+ + KP+I+CGDLNV+H EID+ +P
Sbjct: 111 SGLKRLDF--RLGWEHAFLTFIQKLDAQKPVIFCGDLNVAHTEIDLKNP----------- 157
Query: 215 VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRG 273
K + GFT ER + A+L G D +R+ + D+ +S WS +
Sbjct: 158 ----KTNHHNAGFTDEERAKMTALLAAG-YTDTFRYFN--PDVTERYSWWSYRFHARDNN 210
Query: 274 KRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEAS 322
RIDYFI S+ L++ + ++ L+ GSDHCPV L++++ +
Sbjct: 211 AGWRIDYFITSQRLQNHLQDAKI------LDQIMGSDHCPVELDVTDLT 253
>gi|408907629|emb|CCM11287.1| Exodeoxyribonuclease III [Helicobacter heilmannii ASB1.4]
Length = 251
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 86/283 (30%), Positives = 144/283 (50%), Gaps = 40/283 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
++ V+WN N L ++ F +F+ D+ +Q + ++ F+ Y +W+ A
Sbjct: 1 MRLVSWNVNGLRACMQKG---FKDFLEQSGADIFCVQETKMQPEQANFAFEGYHAFWNSA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G L K+ +P V + + +++ +GRV++ E+ FYL+N Y PN +
Sbjct: 58 VKKGYSGVLTLSKE--EPLSVRYGI--GIAEHDLEGRVVVCEYSQFYLVNVYVPNA--QR 111
Query: 159 EENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R W+K + F+ + K ++ CGDLNV+H EID+++P+ A + N
Sbjct: 112 GLLRLPYRLSWEKAFRGFLSGLVAHKGVLVCGDLNVAHTEIDLTNPQ---ANRYNA---- 164
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
GF+ ER F A+L+EG ID YR + E+ ++W + IG+ R + +
Sbjct: 165 --------GFSDPERHAFSALLQEG-FIDTYRHFYPEQKE--AYTWW-SYIGQARERNVG 212
Query: 277 -RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF+ S+ L+D + + H +GSDHCPV LEL
Sbjct: 213 WRIDYFLASQNLQDTLKNAHIYTH------IFGSDHCPVGLEL 249
>gi|332797757|ref|YP_004459257.1| exodeoxyribonuclease III Xth [Acidianus hospitalis W1]
gi|332695492|gb|AEE94959.1| exodeoxyribonuclease III Xth [Acidianus hospitalis W1]
Length = 247
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 87/280 (31%), Positives = 139/280 (49%), Gaps = 37/280 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPFKN--YQIWWSLA 99
++ ++WN N L + F + I +F+ D++ Q + + ++ Y+I+ A
Sbjct: 1 MRLISWNVNGLKAIMSKG---FIDIIKSFNADILMFQEIKTDVIPLDLQSLGYEIYVFPA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GT + + P VS+ L K +Y+ +GRVI+ E+ +Y++NTY PN G E
Sbjct: 58 KRKGYSGTMTMTR--IHPISVSYGLGKE--EYDSEGRVIILEYPEYYVINTYFPNAG--E 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPN 218
+ +++ ++FV+ KP I CGD NV+H+EID++ P
Sbjct: 112 GLKRLDFKLSFNRDFEKFVISLK-KPCIICGDFNVAHQEIDIARP--------------- 155
Query: 219 KEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRI 278
K++ GFT ER+ F L G +D YR KE +S+ + K G RI
Sbjct: 156 KDNVNHAGFTPQEREWFSHFLSLG-YVDTYRMFVKEGGHYSWWSYRFHAREKNIG--WRI 212
Query: 279 DYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
DY +VSE LK R+I ++ LE GSDH P+ LE+
Sbjct: 213 DYCVVSESLKGRVIKADI------LEKVMGSDHAPILLEI 246
>gi|300767631|ref|ZP_07077541.1| exodeoxyribonuclease III [Lactobacillus plantarum subsp. plantarum
ATCC 14917]
gi|300494616|gb|EFK29774.1| exodeoxyribonuclease III [Lactobacillus plantarum subsp. plantarum
ATCC 14917]
Length = 265
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 84/284 (29%), Positives = 134/284 (47%), Gaps = 42/284 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTF---DPDVIALQ--ILMRALSSPPFKNYQIWW 96
+K ++WN N L VK+ F+ TF D D +Q L F Y +W
Sbjct: 12 VKLISWNVNGLRAAVKHG------FVMTFNELDADFFCVQETKLQAGQIELDFPGYYQYW 65
Query: 97 SLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNG 155
+ A+ K Y+GTA+ K +P V++ + +++ +GRVI E+ +Y+L Y PN+G
Sbjct: 66 NYAERKGYSGTAIFTKH--EPLNVTYGI--GVPEFDDEGRVITLEYADYYVLTCYTPNSG 121
Query: 156 WKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY 214
E R++W+ ++ S KPLI+CGDLNV+HE ID+ +
Sbjct: 122 --GELKRLDYRQQWEDAFLTYINSLSANKPLIFCGDLNVAHENIDLKNW----------- 168
Query: 215 VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGK 274
+ + GFT ER +F +L G F + D+ +S+ G+ G
Sbjct: 169 ----RSNHHSAGFTDEERTKFDRLLAAGYTDTFRHFYPDQTDIYSWWSYRGHARDNNSG- 223
Query: 275 RMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYFI S++L +++ + +GSDHCPV L++
Sbjct: 224 -WRIDYFITSQQLDSQLLNARIHNE------IFGSDHCPVELDI 260
>gi|329895423|ref|ZP_08271004.1| Exodeoxyribonuclease III [gamma proteobacterium IMCC3088]
gi|328922306|gb|EGG29652.1| Exodeoxyribonuclease III [gamma proteobacterium IMCC3088]
Length = 256
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 87/290 (30%), Positives = 147/290 (50%), Gaps = 48/290 (16%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ-------ILMRALSSPPFKNYQI 94
++ V+WN N + K ++ F +F PDV+ LQ ++ AL+ Y++
Sbjct: 1 MRLVSWNVNGIRAVTKKDF--FESF-ERMAPDVLCLQETKAQDDQVLEALTELD-PAYKV 56
Query: 95 WWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPN 153
+ + A+ K Y+GTA++ + +P +S + + +++ +GRV+ AEFETFYL+ Y PN
Sbjct: 57 FSNSAEKKGYSGTAIITR--VEP--ISVTADMGMPEHDTEGRVLCAEFETFYLVTVYTPN 112
Query: 154 NGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLN 212
+G E R+ WDK +++ KP++ CGDLNV+H++ID++ P
Sbjct: 113 SG--SELKRLDYRQSWDKDFADYLKTLEQTKPVVVCGDLNVAHQDIDLARP--------- 161
Query: 213 GYVPPNKEDWGQ-PGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKY 271
K+++ + G+ AE F ++ G +D YR + +SW G
Sbjct: 162 ------KQNYNKSAGYMQAEIDGFDRLVDLG-FVDTYRHFNPNT---AKYSWWSYRAGA- 210
Query: 272 RGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
R K + RIDYF+V+ EL + E+ YGSDHCPV +++S
Sbjct: 211 REKNIGWRIDYFLVTPELTSSLTGAEI------YNDVYGSDHCPVGIDIS 254
>gi|300362953|ref|ZP_07059123.1| exodeoxyribonuclease III [Lactobacillus gasseri JV-V03]
gi|300353003|gb|EFJ68881.1| exodeoxyribonuclease III [Lactobacillus gasseri JV-V03]
Length = 268
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 86/293 (29%), Positives = 143/293 (48%), Gaps = 37/293 (12%)
Query: 30 ETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPF 89
E +S+ ++ +KF++WN N L +++ F N T D D+ A+Q +
Sbjct: 3 ELTSKLIERRIIMKFMSWNVNGLRAALRHG---FVNTFTDLDADIFAIQDTRVEANEVQI 59
Query: 90 K--NYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYL 146
Y +W+ A K YAGTA+ K+ K ++ + + + +GR I EF FY
Sbjct: 60 DLPGYYQYWNYAKRKGYAGTAVFTKE----KPITVANGFGVPEVDGEGRSITLEFPNFYF 115
Query: 147 LNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEF 205
++ P +G K + F R W + + +V + KP+I GD++V+HE+ID++ P+
Sbjct: 116 IDVQVPFSGEKLQRLDF--RELWAQTFRNYVTKLMQYKPVIIGGDMSVAHEKIDLAEPD- 172
Query: 206 FAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSG 265
++ GFT ERK F +L G ID +R+ H ++ +S+
Sbjct: 173 --------------DNHRHAGFTGIERKEFSELLNAG-FIDTFRYFHPDEAKYTYWSYRE 217
Query: 266 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
+ K G R+DYF+VS L+D+II ++ L GSDHCP+ L+L
Sbjct: 218 DARAKNIG--WRLDYFLVSHNLEDKIINTKI------LNNIMGSDHCPIELDL 262
>gi|302787589|ref|XP_002975564.1| hypothetical protein SELMODRAFT_103806 [Selaginella moellendorffii]
gi|300156565|gb|EFJ23193.1| hypothetical protein SELMODRAFT_103806 [Selaginella moellendorffii]
Length = 306
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 92/306 (30%), Positives = 149/306 (48%), Gaps = 46/306 (15%)
Query: 28 TTETSSEENSKKDPLKFVTWNANSL--LLRVKNNWPE----FSNFITTFDPDVIALQIL- 80
+T S S+K+ +K ++WN N L ++ KN E + + D DV+ LQ
Sbjct: 24 STMRPSSPPSEKNLVKVISWNVNGLRACMKRKNELEEEGSVLARLANSEDFDVLCLQETK 83
Query: 81 -----MRALSSPPFKNY-QIWWSLADSK--YAGTALLVKKCFQPKKVSFSLEKTALKYEP 132
+ A+ Y +W+ + SK Y+G AL+ + +P V++ L + +++
Sbjct: 84 LQEKDVEAIKQKILGGYSNSFWTCSSSKLGYSGCALISR--IKPVSVTYGLGIS--QHDG 139
Query: 133 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDL 191
+GRV+ AEF+TF+L++ Y PN+G + E ++ R +WD ++L+ KP+I GDL
Sbjct: 140 EGRVVTAEFDTFFLVSVYVPNSGQRLERLTY-RTTEWDPAFSTYLLELEKRKPVIVTGDL 198
Query: 192 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 251
N +HEEID+ P+ NK GFT ER F + L+D +R
Sbjct: 199 NCAHEEIDIYDPD------------GNKR---SAGFTCEERTSFQTNFIDKGLVDTFR-- 241
Query: 252 HKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 310
K+ + GF+ WS + + K R+DYF+VS+ L + L GSD
Sbjct: 242 -KQHPLAVGFTYWSYRSNARPQNKGWRLDYFLVSQGLVSNV------ADSYVLPQLDGSD 294
Query: 311 HCPVSL 316
HCP+ L
Sbjct: 295 HCPIGL 300
>gi|259503288|ref|ZP_05746190.1| exodeoxyribonuclease [Lactobacillus antri DSM 16041]
gi|259168743|gb|EEW53238.1| exodeoxyribonuclease [Lactobacillus antri DSM 16041]
Length = 275
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 86/303 (28%), Positives = 134/303 (44%), Gaps = 56/303 (18%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNF------ITTFDPDVIALQILMRALSSPP------- 88
+KF++WN +S+ + + +PD +A+Q + + P
Sbjct: 1 MKFISWNIDSINAALTGTSTRAGETRAVLKKLAALEPDAVAIQETKLSKNGPTKKHLQVL 60
Query: 89 ---FKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEF 141
F YQ+ W A YAGT L ++ +QP +S+ + +GR+I EF
Sbjct: 61 ADLFPGYQVAWRSSVEPARKGYAGTMYLYREQYQPT-ISYPQIGAPEPMDSEGRIITLEF 119
Query: 142 ETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEE 197
F+L Y PN+G N +R R +WD ++++ + KP+I GD NV+HEE
Sbjct: 120 PDFFLTEVYTPNSG-----NGLKRLAEREQWDDCYRDYLHELDQQKPVIASGDFNVAHEE 174
Query: 198 IDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDM 257
ID++HP + GFT ER FG +L G D++RFLH D
Sbjct: 175 IDLAHP---------------ANNHHSAGFTDEERTHFGKLLDAG-FTDSFRFLH--PDQ 216
Query: 258 DCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVS 315
+SW + K RIDY+++S+ L DR+ + M G DH P+
Sbjct: 217 AGAYSWWAQRVLTSKQNNSGWRIDYWLISDRLADRVSSSTMIDSGER------RDHTPIM 270
Query: 316 LEL 318
LE+
Sbjct: 271 LEI 273
>gi|307566413|ref|ZP_07628850.1| exodeoxyribonuclease III [Prevotella amnii CRIS 21A-A]
gi|307344885|gb|EFN90285.1| exodeoxyribonuclease III [Prevotella amnii CRIS 21A-A]
Length = 249
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 88/283 (31%), Positives = 138/283 (48%), Gaps = 41/283 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+KF++WN N L V N+ E F+ D D LQ + F Y+ +W+ A
Sbjct: 1 MKFISWNVNGLRACVGKNFKE--EFLA-LDADFFCLQETKMQEGQLDLSFPGYESYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
D K Y+GTA+ K P VS + +++ +GRVI E FYL+ Y PN+ ++
Sbjct: 58 DKKGYSGTAIFTKHT--PLSVSRGI--GIEEHDHEGRVITLEMADFYLVTVYTPNS--QD 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R +W+ Q ++ KP+I CGD+NV+HEEID+ +P
Sbjct: 112 QLKRLPYRMQWETDFQSYLHSLDKHKPVIVCGDMNVAHEEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
K + GF+ ER++ +L G D +RFL+ E+ +SW K R K +
Sbjct: 158 -KSNHFNAGFSDEEREKMTTLLSNG-FTDTFRFLYPEQ---VTYSWWSYRF-KAREKNIG 211
Query: 277 -RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF++S+ L++ + ++ + GSDHCPV + L
Sbjct: 212 WRIDYFLISDRLRESLEEAKIHTEIL------GSDHCPVEIIL 248
>gi|402308513|ref|ZP_10827517.1| exodeoxyribonuclease III [Prevotella sp. MSX73]
gi|400374964|gb|EJP27874.1| exodeoxyribonuclease III [Prevotella sp. MSX73]
Length = 242
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 81/261 (31%), Positives = 127/261 (48%), Gaps = 36/261 (13%)
Query: 63 FSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKV 119
F D D LQ + + F+ Y +W+ A+ K Y+GTA+ K +P V
Sbjct: 12 FEESFKALDADFFCLQETKMQEGQLNLQFEGYDSYWNYAEKKGYSGTAIYTKH--KPLNV 69
Query: 120 SFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ 179
++ L +++ +GRVI E E FYL+ Y PN+ ++E R W+ +++
Sbjct: 70 TYGL--GIEEHDHEGRVITLEMEDFYLITVYTPNS--QDELRRLDYRMTWEDDFLKYIQG 125
Query: 180 CSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAI 238
K P+I CGDLNV+HEEID+ +P K + GFT ER++
Sbjct: 126 LDAKKPVIVCGDLNVAHEEIDLKNP---------------KTNRRNAGFTDEEREKMTIT 170
Query: 239 LKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQ 297
L G D++R+ + E+ +S WS + + RIDYF++S L+DR++ ++
Sbjct: 171 LNSG-FTDSFRYKYPEQ---VTYSWWSYRFHAREKNAGWRIDYFLISNRLRDRLVDAKIH 226
Query: 298 GHGIELEGFYGSDHCPVSLEL 318
YGSDHCPV L+L
Sbjct: 227 TE------VYGSDHCPVELDL 241
>gi|329769257|ref|ZP_08260674.1| exodeoxyribonuclease [Gemella sanguinis M325]
gi|328839251|gb|EGF88834.1| exodeoxyribonuclease [Gemella sanguinis M325]
Length = 254
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 85/285 (29%), Positives = 142/285 (49%), Gaps = 38/285 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K +++N N L V N+ E +F D D LQ + F Y +++ A
Sbjct: 1 MKCISFNVNGLRAIVGKNFEE--DF-KKLDADFFCLQETKMQAGQLDLQFDGYYSYFNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K ++P V++ + +++ +GRVI E++ F+ + Y PN+G
Sbjct: 58 ERKGYSGTAIYTK--YKPLNVTYGI--GIEEHDTEGRVITLEYDNFFFITVYTPNSG--S 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E + R W+ ++++L + K +I CGDLNV+H EID+ +P
Sbjct: 112 ELKRLEYRMSWEDDFKDYLLTLNKDKGVIVCGDLNVAHTEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
K + GFT ER++F +L G ID +R+ + D+ +S WS +
Sbjct: 158 -KTNVKNAGFTPEEREKFTKLLDAG-FIDTFRYFN--PDLTGAYSWWSYRFNARKNNSGW 213
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEA 321
RIDYF+VS++LK +++ ++ +GSDHCPV L L E
Sbjct: 214 RIDYFLVSKDLKKYLVSAKIHND------IFGSDHCPVELVLDET 252
>gi|357405967|ref|YP_004917891.1| exodeoxyribonuclease [Methylomicrobium alcaliphilum 20Z]
gi|351718632|emb|CCE24306.1| Exodeoxyribonuclease [Methylomicrobium alcaliphilum 20Z]
Length = 254
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 96/293 (32%), Positives = 143/293 (48%), Gaps = 57/293 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ-------ILMRALSSPPFKNYQI 94
+K ++WN N + + F+ + D D I LQ + AL S +Y I
Sbjct: 1 MKIISWNVNGIRAVMGKG---FAESLEKLDADCILLQETKAQDDQVQTALES--IDSYHI 55
Query: 95 WWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL-KYEPDGRVILAEFETFYLLNTYAP 152
+ + A K Y+G ALL K+ +P ++ L+ + +++ +GRVI AEFE F LLN Y P
Sbjct: 56 YSNSAGRKGYSGVALLTKQ--EPIQI---LQDIGIDEHDQEGRVIAAEFENFILLNVYVP 110
Query: 153 NNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKL 211
N+G E+ R+ WDK + + Q S KPLI CGD NV+H+EID++ P+ A
Sbjct: 111 NSG--EKLVRLDYRKIWDKELLAYFQQLNSRKPLIACGDFNVAHQEIDIARPK----ANY 164
Query: 212 NGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKY 271
N G+T E +L+ G +D +R LH E +SW G
Sbjct: 165 N----------KSAGYTQTEIDGISRMLEAG-FVDTFRHLHPET---VAYSWWSYRAGA- 209
Query: 272 RGKRM--RIDYFIVSEEL----KDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
R K + RIDY + S+ L K+ IA ++ +GSDHCPV +E+
Sbjct: 210 RAKNIGWRIDYVLTSQALIGKVKNAFIAPDI----------FGSDHCPVGIEI 252
>gi|323483337|ref|ZP_08088727.1| hypothetical protein HMPREF9474_00476 [Clostridium symbiosum
WAL-14163]
gi|323691163|ref|ZP_08105441.1| exodeoxyribonuclease III [Clostridium symbiosum WAL-14673]
gi|355627198|ref|ZP_09049134.1| exodeoxyribonuclease [Clostridium sp. 7_3_54FAA]
gi|323403435|gb|EGA95743.1| hypothetical protein HMPREF9474_00476 [Clostridium symbiosum
WAL-14163]
gi|323504773|gb|EGB20557.1| exodeoxyribonuclease III [Clostridium symbiosum WAL-14673]
gi|354820443|gb|EHF04859.1| exodeoxyribonuclease [Clostridium sp. 7_3_54FAA]
Length = 251
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 90/279 (32%), Positives = 132/279 (47%), Gaps = 38/279 (13%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLAD 100
K ++WN N L V F + D D+ +Q L Y +WS A+
Sbjct: 3 KLISWNVNGLRACVGKG---FLDIFKELDADIFCIQESKLQGGQIDLELDGYYQYWSYAE 59
Query: 101 SK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEE 159
K Y+GTAL K+ +P V++ L A +E GRVI AEF +Y++ Y PN+ ++
Sbjct: 60 KKGYSGTALFTKE--EPLSVTYGLGIEAHDHE--GRVITAEFPDYYVITCYTPNS--QDG 113
Query: 160 ENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPN 218
R +W+ ++ + KP+I+CGDLNV+H EID+ +P
Sbjct: 114 LARLPYRMQWEDDFLSYLKKLEEHKPVIFCGDLNVAHREIDLKNP--------------- 158
Query: 219 KEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMR 277
K + GFT ER +F +L+ G ID YR H D + +S WS + + R
Sbjct: 159 KSNRKNAGFTDEERGKFTQLLESG-FIDTYR--HFYPDQEGIYSWWSYRFKAREKNAGWR 215
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
IDYF VS+ L+DR+ + + GSDHCPV L
Sbjct: 216 IDYFCVSKALEDRLESAMIHTE------IMGSDHCPVEL 248
>gi|116630243|ref|YP_815415.1| exonuclease III [Lactobacillus gasseri ATCC 33323]
gi|420148175|ref|ZP_14655447.1| Exonuclease III [Lactobacillus gasseri CECT 5714]
gi|116095825|gb|ABJ60977.1| Exonuclease III [Lactobacillus gasseri ATCC 33323]
gi|398400333|gb|EJN53898.1| Exonuclease III [Lactobacillus gasseri CECT 5714]
Length = 268
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 85/295 (28%), Positives = 142/295 (48%), Gaps = 41/295 (13%)
Query: 30 ETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMR-----AL 84
E +SE ++ +KF++WN N L +++ F N T D D+ A+Q +
Sbjct: 3 ELTSELIERRIIMKFMSWNVNGLRAALRHG---FVNTFTDLDADIFAIQDTRVEPNEVQI 59
Query: 85 SSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETF 144
P + YQ W YAGTA+ K+ K ++ + + + +GR I EF F
Sbjct: 60 DLPGY--YQYWNYAKRKGYAGTAVFTKE----KPITVANGFGVPEVDGEGRSITLEFSNF 113
Query: 145 YLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHP 203
Y ++ P +G K + F R W + + +V + KP+I GD++V+H++ID++ P
Sbjct: 114 YFIDVQVPFSGEKLQRLDF--RELWAQTFRNYVTKLMQYKPVIIGGDMSVAHDKIDLAEP 171
Query: 204 EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSW 263
+ ++ GFT ERK F +L G ID +R+ H ++ +S+
Sbjct: 172 D---------------DNHRHAGFTGIERKEFSELLNAG-FIDTFRYFHPDEAKYTYWSY 215
Query: 264 SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
+ K G R+DYF+VS L+D++I ++ L GSDHCP+ L+L
Sbjct: 216 REDARAKNIG--WRLDYFLVSNNLEDKMINAQI------LNNIMGSDHCPIELDL 262
>gi|299141239|ref|ZP_07034376.1| exodeoxyribonuclease III [Prevotella oris C735]
gi|298577199|gb|EFI49068.1| exodeoxyribonuclease III [Prevotella oris C735]
Length = 250
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 85/282 (30%), Positives = 139/282 (49%), Gaps = 39/282 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+KF++WN N L V +FS T + D LQ + F Y +W+ A
Sbjct: 1 MKFISWNVNGLRACVGK---DFSQSFETLNADFFCLQETKMQAGQLDLQFPGYTSYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
D K Y+GTA+ +K +P V++ + +++ +GRVI E++ F+L+ Y PN ++
Sbjct: 58 DKKGYSGTAIYARK--EPIAVTYGIGID--EHDHEGRVITLEYDNFFLVTVYTPNA--QD 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R W+ Q ++ + KP+I CGDLNV+H+EID+ +P
Sbjct: 112 GLRRLDYRMTWEDDFQAYLHRLDEQKPVIVCGDLNVAHQEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
K + GFT ER++ +L G D +R L+ E+ +S WS + +
Sbjct: 158 -KSNRRNAGFTDEEREKMTQLLSHG-FTDTFRTLYPEQ---VTYSWWSYRFRAREKNAGW 212
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF++S+ L+ +++ I E F GSDHCP+ ++L
Sbjct: 213 RIDYFLISDRLRP-----QLKDASIHTEIF-GSDHCPIEVDL 248
>gi|313894410|ref|ZP_07827975.1| exodeoxyribonuclease III [Veillonella sp. oral taxon 158 str.
F0412]
gi|313441234|gb|EFR59661.1| exodeoxyribonuclease III [Veillonella sp. oral taxon 158 str.
F0412]
Length = 251
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 84/283 (29%), Positives = 135/283 (47%), Gaps = 40/283 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQIL-----MRALSSPPFKNYQIWW 96
+K ++WN N L V + E N D D+ LQ +L P ++ Y W
Sbjct: 1 MKLISWNVNGLRAAVTKGFMESFN---ELDADIFCLQETKLQPEQISLELPGYEQY--WN 55
Query: 97 SLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 156
S Y+GTA+ + +P V+ + +++ +GRVI AE++ FYL+ Y PN+
Sbjct: 56 SAVKKGYSGTAVFTR--IKPLSVTNGI--GIEEHDQEGRVITAEYDNFYLVCCYTPNS-- 109
Query: 157 KEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 215
+ E + R W+ + ++L+ K P+I CGDLNV+H+EID+ +P
Sbjct: 110 QRELARLEYRMAWEDAFRNYLLELDKKKPVILCGDLNVAHQEIDLKNP------------ 157
Query: 216 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 275
K + GF+ ER + +L G D +R L+ + + WS + R
Sbjct: 158 ---KTNRKNAGFSDEERAKMTELLGAG-FTDTFRHLYPDAIEQYSW-WSYMGKARERNTG 212
Query: 276 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYFI S+ L D+I ++ + +GSDHCPV L++
Sbjct: 213 WRIDYFITSKRLDDKIQEAKIH------QQIFGSDHCPVELDI 249
>gi|325299788|ref|YP_004259705.1| exodeoxyribonuclease III Xth [Bacteroides salanitronis DSM 18170]
gi|324319341|gb|ADY37232.1| exodeoxyribonuclease III Xth [Bacteroides salanitronis DSM 18170]
Length = 251
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 84/279 (30%), Positives = 134/279 (48%), Gaps = 36/279 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L F + T + D LQ + F Y +W+ A
Sbjct: 1 MKLISWNVNGLRACCDKG---FRDAFTRLNADFFCLQETKMQAGQLDLAFDGYTSYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ + QP VS+ + +++ +GRVI E E FYL+ Y PN+ ++
Sbjct: 58 EKKGYSGTAIFTRH--QPLNVSYGMGID--EHDREGRVITLEMENFYLVTVYTPNS--QD 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R W+ + ++L+ K P++ CGDLNV+H+EID+ +P
Sbjct: 112 GLKRLDYRMTWEDAFRRYLLELDAKKPVLVCGDLNVAHKEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GFT ER++F +L G ID +R+ + E++ + WS + + R
Sbjct: 158 -KTNRMNAGFTDQEREKFQTLLDAG-FIDTFRYFYPEQEGIYSW-WSYRFRAREKNAGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
IDYF+ S L A +++ I E F GSDHCPV +
Sbjct: 215 IDYFLASARL-----AGKLESAAIHTEIF-GSDHCPVEV 247
>gi|257867352|ref|ZP_05647005.1| exodeoxyribonuclease [Enterococcus casseliflavus EC30]
gi|257873685|ref|ZP_05653338.1| exodeoxyribonuclease [Enterococcus casseliflavus EC10]
gi|257801408|gb|EEV30338.1| exodeoxyribonuclease [Enterococcus casseliflavus EC30]
gi|257807849|gb|EEV36671.1| exodeoxyribonuclease [Enterococcus casseliflavus EC10]
Length = 252
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 84/283 (29%), Positives = 133/283 (46%), Gaps = 38/283 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+KF++WN N L VK N FS D D LQ L Y +W+ A
Sbjct: 1 MKFISWNVNGLRAIVKKN---FSEVFEALDADFFCLQETKLQEGQIELDLPGYHQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K+ + +E+ ++ +GRVI E+ F+L+ Y PN+ +
Sbjct: 58 EKKGYSGTAIFAKEPALSVRYGLGIEE----HDTEGRVITLEYPEFFLITCYTPNS--QN 111
Query: 159 EENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R W+ ++ + KP+I CGDLNV+H+ ID+ +
Sbjct: 112 ELRRLDYRMTWEDAFLAYLTELKQQKPVILCGDLNVAHKNIDIKNW-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
K + GFT ER++F +L G D +R+ + D + +S WS +
Sbjct: 158 -KTNQKSAGFTPEEREKFSTLLAAG-FTDTFRYFY--PDAEGIYSWWSYRFNARKNNAGW 213
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
RIDYF+VS++L + ++ ++ I GSDHCPV L+L+
Sbjct: 214 RIDYFVVSDDLNESLLDAKIHTDII------GSDHCPVELDLN 250
>gi|294674336|ref|YP_003574952.1| exodeoxyribonuclease III [Prevotella ruminicola 23]
gi|294473057|gb|ADE82446.1| exodeoxyribonuclease III [Prevotella ruminicola 23]
Length = 249
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 83/282 (29%), Positives = 137/282 (48%), Gaps = 39/282 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L FS+ D D LQ + F+ Y+ +W+ A
Sbjct: 1 MKLISWNVNGLR---ACEGKGFSDTFRELDADFFCLQETKMQAGQLDLAFEGYESYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K P V++ + +++ +GRVI E E FYL+ Y PN+ ++
Sbjct: 58 EKKGYSGTAIFTKH--HPLSVTYGIGID--EHDHEGRVITLEMEDFYLVTCYTPNS--QD 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R W+ + ++ K P+I CGDLNV+H+EID+ +P+ ++N
Sbjct: 112 GLKRLDYRMTWENDFRAYLKGLDAKKPVILCGDLNVAHQEIDLKNPK---TNRMNA---- 164
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
GFT ER++F +L G D++R+ + E+ +S WS + +
Sbjct: 165 --------GFTDQEREQFSTLLASG-FTDSFRYKYPEQ---VTYSWWSYRFQARQKNAGW 212
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF++S+ L++R+ + + GSDHCPV L L
Sbjct: 213 RIDYFVISDRLRERMDDARIHTQIL------GSDHCPVELTL 248
>gi|348524661|ref|XP_003449841.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like
[Oreochromis niloticus]
Length = 310
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 84/296 (28%), Positives = 150/296 (50%), Gaps = 41/296 (13%)
Query: 33 SEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ-------ILMRALS 85
+ ++ + +K +WN + L VK + +++ DPD++ LQ L ++
Sbjct: 46 TSKDGRNANMKITSWNVDGLRAWVKK---KGLDWVREEDPDILCLQETKCAEKALPAEIT 102
Query: 86 SPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETF 144
S P ++ W + D + Y+G A+L K +P KV++ + K +++ +GRVI AEF +F
Sbjct: 103 SMPEYPHKYWAASGDKEGYSGVAMLCKT--EPIKVTYGIGKE--EHDKEGRVITAEFPSF 158
Query: 145 YLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHP 203
YL+ Y PN R+ WD + ++ + KPL+ CGDLNV+H+EID+ +P
Sbjct: 159 YLVTAYVPNAS--RGLVRLDYRKTWDVDFRAYLSELDMQKPLVLCGDLNVAHQEIDLKNP 216
Query: 204 EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSW 263
+ NK++ GFT ER+ F +L G +D++R L+ E+ F W
Sbjct: 217 K------------GNKKN---AGFTPEEREGFSQLLAAG-FVDSFRELYPEQTNAYTF-W 259
Query: 264 SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
+ + + R+DYF++S L + +++ + GSDHCP++L ++
Sbjct: 260 TYMMNARSKNVGWRLDYFVLSSSLLPGLCDSKIRNKAM------GSDHCPITLHIA 309
>gi|377809183|ref|YP_005004404.1| exodeoxyribonuclease III [Pediococcus claussenii ATCC BAA-344]
gi|361055924|gb|AEV94728.1| exodeoxyribonuclease III [Pediococcus claussenii ATCC BAA-344]
Length = 251
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 81/282 (28%), Positives = 135/282 (47%), Gaps = 38/282 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L V + F + D D +Q L + F Y +W+ A
Sbjct: 1 MKLISWNVNGLRAAVTHG---FEDTFKDLDADFFCVQETKLQKGQIEIDFPGYYQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K +P V++ + +Y+ +GR+I E+ +Y++ Y PN+ +
Sbjct: 58 ERKGYSGTAIFTKH--KPLNVTYGI--GIEEYDTEGRIITLEYANYYVITCYTPNS--QP 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ + R W+ + +V Q KP+I+CGDLNV+H EID+ +P
Sbjct: 112 KLKRLEYRMSWEDAFKNYVDQLKKDKPVIFCGDLNVAHNEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
K + GF+ ER +F +L+ G D +R H D+ +S WS +
Sbjct: 158 -KTNHKNAGFSDQERAKFTELLQSG-FTDTFR--HFYPDLTGIYSWWSYRFNARKNNAGW 213
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF+ S +L D++ ++ +GSDHCPV L++
Sbjct: 214 RIDYFVTSNDLDDKLKDAKIHTE------IFGSDHCPVELDI 249
>gi|346473687|gb|AEO36688.1| hypothetical protein [Amblyomma maculatum]
Length = 350
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 93/308 (30%), Positives = 147/308 (47%), Gaps = 41/308 (13%)
Query: 21 PSKKDGETTETSSEENSKKDP--LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ 78
P K E+ E K P LK +WN N + + E+ + PD+ A+Q
Sbjct: 74 PKKSKSESGEPCDGGEGDKKPWNLKLCSWNVNGVRAWLGKEGLEY---LKKEQPDIFAIQ 130
Query: 79 ILMRALSSPP-----FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEP 132
+ S P + Y ++ D + Y+G ALL K +P V + + K++
Sbjct: 131 ETKCSDSKLPPEMKSVEGYHSYFLAGDQEGYSGVALLAK--IKPLDVKYGIGME--KHDK 186
Query: 133 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKP-LIWCGDL 191
+GRVI AEF+ FYL+ Y PN G K + R +WDK + ++ + K ++ CGD+
Sbjct: 187 EGRVITAEFDKFYLVAVYVPNAGKKLVRLDY--RMEWDKDFRAYLKELEAKKHVVLCGDM 244
Query: 192 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 251
NV+H+EID+++P+ NK++ GFT ER F A+L+ G +D++R L
Sbjct: 245 NVAHQEIDLANPK------------TNKKN---AGFTQEERDGFTALLESG-FVDSFRHL 288
Query: 252 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 311
+ +K F W+ + + R+DYFI+S+ L I + GSDH
Sbjct: 289 YPDKKGAYTF-WTYMMNARAKNVGWRLDYFILSKALASNISDSLIHSQ------VMGSDH 341
Query: 312 CPVSLELS 319
CPV L L+
Sbjct: 342 CPVILLLN 349
>gi|421491432|ref|ZP_15938798.1| exodeoxyribonuclease III [Streptococcus anginosus SK1138]
gi|400371534|gb|EJP24493.1| exodeoxyribonuclease III [Streptococcus anginosus SK1138]
Length = 275
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 87/300 (29%), Positives = 132/300 (44%), Gaps = 50/300 (16%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFSNFI----TTFDPDVIALQILMRALSSPP------- 88
+K ++WN +SL L + + S + T D D+IA+Q + P
Sbjct: 1 MKLISWNIDSLNAALTSDSARAQLSQAVLQTLVTLDADIIAIQETKLSAKGPTKKHLTIL 60
Query: 89 ---FKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEF 141
F NYQ W A YAGT L K+ PK ++F + +GR+I EF
Sbjct: 61 EELFPNYQHTWRSSIEPARKGYAGTMFLYKENLSPK-ITFPEIGAPSTMDAEGRIITLEF 119
Query: 142 ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDV 200
E F++ Y PN G + + R+ WDK+ +++ KP++ GD NV+H EID+
Sbjct: 120 EKFFVTQVYTPNAG--DGLKRLEERQIWDKKYADYLTTLDKEKPVLATGDYNVAHNEIDL 177
Query: 201 SHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCG 260
+HP N+ PGFT ER F +L G D +R++H D+
Sbjct: 178 AHPS------------SNRR---SPGFTDEERSGFTNLLNRG-FTDTFRYIH--GDIPNV 219
Query: 261 FSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
+SW + K RIDY++ S + D++ EM G DH P+ LE+
Sbjct: 220 YSWWAQRSKTSKINNSGWRIDYWLTSNRIADKVTKSEMIDSGTR------QDHTPIVLEI 273
>gi|317133644|ref|YP_004092958.1| exodeoxyribonuclease III Xth [Ethanoligenens harbinense YUAN-3]
gi|315471623|gb|ADU28227.1| exodeoxyribonuclease III Xth [Ethanoligenens harbinense YUAN-3]
Length = 256
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 83/286 (29%), Positives = 139/286 (48%), Gaps = 36/286 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L ++ F++F + D+ +Q + + F YQ +W+ A
Sbjct: 1 MKLISWNVNGLRACMQKG---FADFFNREEADIFCVQETKMHPEQADFAFDGYQSFWNSA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ + P V + + + ++ +GRVI E E F+L+N Y PN+ +
Sbjct: 58 EKKGYSGTAVFTR--VPPLSVRYDMGEP--EHTGEGRVITVESEAFFLVNVYTPNS--QR 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R +W+ + ++L + KP++ CGD+NV+H EID+ +P
Sbjct: 112 DLVRLDYRMRWEDAFRAYLLTLNRDKPVVVCGDMNVAHREIDIKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GFT ER++ +L+ G ID +R L+ E+ D WS + R R
Sbjct: 158 -KSNIHNAGFTPEERQKMTDLLEAG-FIDTFRALYPEQK-DAYTWWSYMRKARERNAGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEASS 323
IDYF+VS+ L+ ++ + GSDHCPV L L S
Sbjct: 215 IDYFLVSDRLRGQVEDSTIYAD------VPGSDHCPVGLLLHTGGS 254
>gi|48477699|ref|YP_023405.1| exodeoxyribonuclease III [Picrophilus torridus DSM 9790]
gi|48430347|gb|AAT43212.1| exodeoxyribonuclease III [Picrophilus torridus DSM 9790]
Length = 250
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 94/287 (32%), Positives = 138/287 (48%), Gaps = 47/287 (16%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPP----FKNYQIWWS 97
+K ++WN N + VKN NFI +PD++ LQ + + P Y+I+ +
Sbjct: 1 MKILSWNVNGIRAAVKNG---ILNFINEENPDIVLLQEIKSGKNDLPEELHHMGYKIFIN 57
Query: 98 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 156
A+ K Y+GT L K +P + +S Y+ +GRV + +++ FY++NTY PN+
Sbjct: 58 PAEKKGYSGTMALSK--VEP--LDYSSGIGIKDYDSEGRVQILKYDNFYIINTYFPNS-- 111
Query: 157 KEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 215
+ + +D + EF + KPLI GD NV+HEEID++ P
Sbjct: 112 QHGLTRLDYKIDFDNKFLEFCEKLRKEKPLIITGDFNVAHEEIDIARP------------ 159
Query: 216 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 275
K++ GFTI ER L G ID YR+ HKE +S+ N K G
Sbjct: 160 ---KDNENNAGFTIQERNWMTEFLNHG-YIDTYRYFHKEPGHYSWWSYRFNARAKNIG-- 213
Query: 276 MRIDYFIVSEE----LKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYFIV+++ +KD II LE GSDH P+ L L
Sbjct: 214 WRIDYFIVTDDFIKNVKDSII----------LENVKGSDHAPLELLL 250
>gi|158321340|ref|YP_001513847.1| exodeoxyribonuclease III Xth [Alkaliphilus oremlandii OhILAs]
gi|158141539|gb|ABW19851.1| exodeoxyribonuclease III Xth [Alkaliphilus oremlandii OhILAs]
Length = 252
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 80/281 (28%), Positives = 136/281 (48%), Gaps = 36/281 (12%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLAD 100
K ++WN N + V F ++ D D+ +Q L + Y +W+ A+
Sbjct: 3 KLISWNVNGIRACVTKG---FLDYFKEVDADIFCIQESKLQAGQIDLELEGYHQYWNYAE 59
Query: 101 SK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEE 159
K Y+GTA+ K+ +P V + + +++ +GRVI EF +Y++ Y PN+ +++
Sbjct: 60 KKGYSGTAIFTKE--EPISVFYGI--GIEEHDKEGRVITLEFGDYYMVTVYTPNS--QQK 113
Query: 160 ENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPN 218
R W+ + ++ KP+I CGDLNV+H EID+ +P
Sbjct: 114 LARLDYRMTWEDCFRSYLNNLDKQKPIIVCGDLNVAHNEIDLKNP--------------- 158
Query: 219 KEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRI 278
K + GF+ ER +F L G ID YR+ + +++ + WS + RI
Sbjct: 159 KSNRKNAGFSDEERAKFTEFLGNG-YIDTYRYFYPDREGAYTW-WSYMFNARANNAGWRI 216
Query: 279 DYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
DYF VSE L+D++++ ++ H + GSDHCPV L ++
Sbjct: 217 DYFCVSERLQDKLVSADIHDHIL------GSDHCPVELVIN 251
>gi|281423696|ref|ZP_06254609.1| exodeoxyribonuclease III [Prevotella oris F0302]
gi|281402248|gb|EFB33079.1| exodeoxyribonuclease III [Prevotella oris F0302]
Length = 250
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 85/282 (30%), Positives = 138/282 (48%), Gaps = 39/282 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+KF++WN N L V +FS T + D LQ + F Y +W+ A
Sbjct: 1 MKFISWNVNGLRACVGK---DFSQSFETLNADFFCLQETKMQAGQLDLQFPGYTSYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
D K Y+GTA+ +K +P V++ + +++ +GRVI E++ F+L+ Y PN ++
Sbjct: 58 DKKGYSGTAIYARK--EPIAVTYGIGID--EHDHEGRVITLEYDNFFLVTVYTPNA--QD 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R W+ Q ++ + KP+I CGDLNV+H+EID+ +P
Sbjct: 112 GLRRLDYRMTWEDDFQAYLHRLDEQKPVIVCGDLNVAHQEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
K + GFT ER + +L G D +R L+ E+ +S WS + +
Sbjct: 158 -KSNRRNAGFTDEERDKMTQLLSHG-FTDTFRTLYPEQ---VTYSWWSYRFRAREKNAGW 212
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF++S+ L+ +++ I E F GSDHCP+ ++L
Sbjct: 213 RIDYFLISDRLRP-----QLKDASIHTEIF-GSDHCPIEVDL 248
>gi|432942680|ref|XP_004083030.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like isoform 1
[Oryzias latipes]
Length = 311
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 86/287 (29%), Positives = 144/287 (50%), Gaps = 41/287 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPFKNYQI------W 95
+K +WN + L VK +++ PDV+ LQ A P + + +
Sbjct: 56 MKITSWNVDGLRAWVKKG---GLDWVREEAPDVLCLQETKCAEKDLPAEITSMPEYPHKY 112
Query: 96 WSLADSK--YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPN 153
W+++D K Y+G A+L K +P KV++ + K +++ +GRVI AEF TF+L+ Y PN
Sbjct: 113 WAVSDDKEGYSGVAMLSKT--EPLKVTYGIGKE--EHDKEGRVITAEFPTFFLVTAYVPN 168
Query: 154 NGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLN 212
R+ WD Q ++ + KPL+ CGDLNV+H+EID+ +P+
Sbjct: 169 A--SRGLVRLDYRKTWDVDFQAYLTELDVQKPLVLCGDLNVAHQEIDLKNPK-------- 218
Query: 213 GYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYR 272
NK++ GFT ER+ F +L G +D++R L+ E+ F W+ + +
Sbjct: 219 ----GNKKN---AGFTPEEREGFSQLLAAG-FVDSFRELYPEQANAYTF-WTYMMNSRAK 269
Query: 273 GKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 270 NVGWRLDYFLLSSSLVPGLCDSKIRNKAM------GSDHCPITLHLA 310
>gi|358068175|ref|ZP_09154645.1| exodeoxyribonuclease [Johnsonella ignava ATCC 51276]
gi|356693719|gb|EHI55390.1| exodeoxyribonuclease [Johnsonella ignava ATCC 51276]
Length = 252
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 84/285 (29%), Positives = 143/285 (50%), Gaps = 46/285 (16%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRA-----LSSPPFKNYQIWWS 97
K ++WN N + ++ F + D D+ +Q + L P + +Y W+
Sbjct: 3 KMISWNVNGIRACIEKG---FLDVFKNMDADIFCIQESKVSEGQLELDLPGYYDY---WN 56
Query: 98 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 156
A K Y+G A+ K +P KV++ + +++ +GR+I AEFE +Y+L Y PN+
Sbjct: 57 YAQKKGYSGVAMFTKD--KPVKVTYGM--GIEEHDNEGRIITAEFENYYMLTCYTPNS-- 110
Query: 157 KEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 215
+ + + R W+ +++ S KPLI+CGDLNV+ +ID+ +P
Sbjct: 111 QRQLTRLEYRMDWEDAFLDYIKNLSQKKPLIYCGDLNVAFADIDLKNP------------ 158
Query: 216 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 275
K + GFT ER++ A+++ D++R+L+ D++ +SW + +G R K
Sbjct: 159 ---KTNRKNAGFTDEERQKM-AVVQASGFTDSFRYLY--PDLEGVYSW-WSYMGGARSKN 211
Query: 276 M--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
+ RIDYF+VS+ LK+ I + GSDHCPV LE+
Sbjct: 212 IGWRIDYFMVSDSLKNCIKQARIH------TDIMGSDHCPVELEI 250
>gi|225159347|ref|ZP_03725644.1| DNA-(apurinic or apyrimidinic site) lyase [Diplosphaera
colitermitum TAV2]
gi|224802053|gb|EEG20328.1| DNA-(apurinic or apyrimidinic site) lyase [Diplosphaera
colitermitum TAV2]
Length = 259
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 86/292 (29%), Positives = 135/292 (46%), Gaps = 47/292 (16%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQIL------MRALSSPPFKNYQIW 95
+K V+WN N + ++ ++I D I LQ ++ + P Y
Sbjct: 1 MKLVSWNVNGVRAVLQKG---LLDYIAASGADAICLQETKCQPGDVQHVEWP--AGYTAH 55
Query: 96 WSLADSK-YAGTALLVKK------CFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLN 148
W+ A + Y+GTA+ + P V+ + + +++ +GRV+ AEF FYL+N
Sbjct: 56 WNAAQKRGYSGTAIFTRMGAGSSPALTPLAVTAGIGRD--EHDTEGRVLTAEFPDFYLVN 113
Query: 149 TYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFA 207
Y PN + E R++WD ++ + KP++ CGDLNV+HEEID++ P
Sbjct: 114 AYVPNA--QPELARLPYRQRWDADFLAYLRGLETRKPVVMCGDLNVAHEEIDLARP---- 167
Query: 208 AAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNP 267
KE+ G PGF+ ER F L+ G +D +R K +S+
Sbjct: 168 -----------KENVGNPGFSNEERAGFREFLRAG-FLDTFREFEKGPGHYSWWSYRAGA 215
Query: 268 IGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
GK G RIDYF+ S L+ R+ ++ GSDHCP+ LEL+
Sbjct: 216 RGKNVG--WRIDYFLASASLRPRLKRAWIE------PAVMGSDHCPIGLELA 259
>gi|227874120|ref|ZP_03992326.1| exodeoxyribonuclease III [Oribacterium sinus F0268]
gi|227840032|gb|EEJ50456.1| exodeoxyribonuclease III [Oribacterium sinus F0268]
Length = 254
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 84/280 (30%), Positives = 137/280 (48%), Gaps = 36/280 (12%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLAD 100
K ++WN N L + N F D D+ LQ L Y +W+ A
Sbjct: 5 KLISWNVNGLRAVMGKN---FMEDFKRLDADMFCLQETKLQEGQIDLDLPGYFQYWNYAV 61
Query: 101 SK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEE 159
K Y+GTA+ K+ +P V + + +++ +GRVI E+ FYL+ Y PN+ + E
Sbjct: 62 KKGYSGTAIFTKE--EPLSVQYGI--GVEEHDQEGRVITLEYPEFYLITVYVPNS--QGE 115
Query: 160 ENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPN 218
R K++ ++L K P+I+CGDLNV+HEEID+ +P+ + +N
Sbjct: 116 LKRLPYRMKFEDAFLNYILTLEKKKPVIYCGDLNVAHEEIDLKNPD---SNHMNA----- 167
Query: 219 KEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRI 278
GF+ ER +F +L G L D++R + K+ + + WS + R RI
Sbjct: 168 -------GFSDEERAKFSRVLDSGYL-DSFRHFYPNKEEEYSW-WSYRTKARDRNVGWRI 218
Query: 279 DYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
DYF+VS++L+ ++++ + + GSDHCPV + L
Sbjct: 219 DYFVVSKQLEKKLLSASIH------QEVMGSDHCPVEITL 252
>gi|354806768|ref|ZP_09040248.1| exodeoxyribonuclease III [Lactobacillus curvatus CRL 705]
gi|354514743|gb|EHE86710.1| exodeoxyribonuclease III [Lactobacillus curvatus CRL 705]
Length = 254
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 85/289 (29%), Positives = 143/289 (49%), Gaps = 48/289 (16%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTF---DPDVIALQ-ILMRA----LSSPPFKNYQ 93
+KF++WN N L +K +F+TTF D D LQ M+A L P + Y
Sbjct: 1 MKFISWNVNGLRAVLK------KDFMTTFNQLDADFFCLQETKMQAGQVELDLPGYHQY- 53
Query: 94 IWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAP 152
++ A+ K Y+GTA+ K +P ++ + + +++ +GRVI E+ TFYL+ Y P
Sbjct: 54 --FNYAEKKGYSGTAIFTKH--KPLTATYGIGQP--EHDQEGRVITLEYPTFYLITCYTP 107
Query: 153 NNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKL 211
N+ +++ R +W+ Q ++ S KP+I+CGDLNV+HE ID+ +
Sbjct: 108 NS--QDKLKRLDYRMRWENAFQTYIADLSTQKPVIFCGDLNVAHEPIDLKN--------- 156
Query: 212 NGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKY 271
+K + GF+ ER + +L G D +R+ + ++ D WS +
Sbjct: 157 ------DKTNHHNAGFSDEERGQMTTLLNRG-FTDTFRYFYPDQP-DIYSWWSYRFHARD 208
Query: 272 RGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 320
RIDYFI S +L+ +++ ++ +GSDHCPV L+ +
Sbjct: 209 NNAGWRIDYFITSNDLQPKLVDAKIHTE------IFGSDHCPVELDTQD 251
>gi|336392108|ref|ZP_08573507.1| exodeoxyribonuclease III [Lactobacillus coryniformis subsp.
torquens KCTC 3535]
Length = 257
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 83/284 (29%), Positives = 143/284 (50%), Gaps = 43/284 (15%)
Query: 40 DPLKFVTWNANSLLLRVKNNWPEF-----SNFITTFDPDVIALQILMRALSSPPFKNYQI 94
+ LKF++WN N L VK N+ EF ++F + + A QI L+ P + Y
Sbjct: 2 NALKFISWNVNGLRAVVKKNFMEFFEQQDADFFCIQETKLQAGQI---ELTLPGYYQY-- 56
Query: 95 WWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPN 153
W+ A+ K Y+GTA+ K +P V++ + +++ +GR+I E++ FYLL Y PN
Sbjct: 57 -WNYAERKGYSGTAIFTKH--EPLNVTYGM--GVAEHDQEGRLITLEYKDFYLLTCYTPN 111
Query: 154 NGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLN 212
+ K + + R W+ + ++ + K P+I+CGDLNV+HE ID+ +
Sbjct: 112 SQTKLKRLDY--RMSWEDAFRSYISTLNQKKPVIFCGDLNVAHEPIDLKN---------- 159
Query: 213 GYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYR 272
+K + GF+ ER +F +L G D++R+ + ++ +S+ N +
Sbjct: 160 -----DKTNHHNAGFSDEERAKFSQLLSAG-FTDSFRYFYPDQVTYSWWSYRFN--ARQN 211
Query: 273 GKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
RIDYF+ +++L+ ++ + L GSDHCPV L
Sbjct: 212 NAGWRIDYFVTADQLQPQLADAAI------LTDVLGSDHCPVML 249
>gi|408411522|ref|ZP_11182670.1| Exodeoxyribonuclease III [Lactobacillus sp. 66c]
gi|409350015|ref|ZP_11233286.1| Exodeoxyribonuclease III [Lactobacillus equicursoris CIP 110162]
gi|407874302|emb|CCK84476.1| Exodeoxyribonuclease III [Lactobacillus sp. 66c]
gi|407877730|emb|CCK85344.1| Exodeoxyribonuclease III [Lactobacillus equicursoris CIP 110162]
Length = 275
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 87/301 (28%), Positives = 138/301 (45%), Gaps = 50/301 (16%)
Query: 42 LKFVTWNANSLLLRVKNNWP--EFSNFITT----FDPDVIALQILMRALSSPPFKNYQIW 95
++ ++WN +SL + P E + I T DPD++A+Q S P K+ ++
Sbjct: 1 MRLISWNIDSLNAALTGTSPRAEMTRGILTKLHDLDPDILAIQETKLPASGPSKKHQKLL 60
Query: 96 WSL--------------ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEF 141
L A YAGT L KK +P V++ + +GR+I EF
Sbjct: 61 AELFPEYTYVWRSSVEPARKGYAGTMYLYKKDLEPT-VTYPEIGAPEPMDAEGRMITLEF 119
Query: 142 ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDV 200
FY+ Y PN+G + R++WD+ + ++ + KP++ GD N +++EID+
Sbjct: 120 PDFYVTEVYTPNSGTGLKR--LDERQEWDQCYRTYLEKLDAQKPVLASGDFNAAYQEIDL 177
Query: 201 SHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCG 260
HPE + GFT ER FG +L G +D +R LH + ++
Sbjct: 178 KHPE---------------NNHHSAGFTDEERAGFGQLLGSG-FVDTFRLLHGQ--VEGV 219
Query: 261 FSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
+SW + K RIDY++VSE L D++ EM G +DHCP+ LE+
Sbjct: 220 YSWWAQRVRSAKANNSGWRIDYWLVSERLADKVTKSEMIDTGER------ADHCPILLEV 273
Query: 319 S 319
S
Sbjct: 274 S 274
>gi|226322793|ref|ZP_03798311.1| hypothetical protein COPCOM_00565 [Coprococcus comes ATCC 27758]
gi|225208774|gb|EEG91128.1| exodeoxyribonuclease III [Coprococcus comes ATCC 27758]
Length = 231
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 82/260 (31%), Positives = 125/260 (48%), Gaps = 37/260 (14%)
Query: 65 NFITTFDPDVIALQIL-----MRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKV 119
+F D D+ LQ L P + +Q W S Y+GTA+ KK +P V
Sbjct: 2 DFFKEADADIFCLQETKMQEGQLVLDLPEY--HQYWNSAVKKGYSGTAIFTKK--EPLSV 57
Query: 120 SFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ 179
++ L +++ +GRVI EFE FY + Y PN+ + E R W+ ++ +
Sbjct: 58 TYGL--GIEEHDQEGRVITLEFEDFYFITVYTPNS--QSELARLDYRMTWEDAFLAYLKK 113
Query: 180 CS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAI 238
KP+I+CGDLNV+H+EID+ +P K + GFT ER +F A+
Sbjct: 114 LEETKPVIFCGDLNVAHKEIDLKNP---------------KTNRKNAGFTDEERAKFSAL 158
Query: 239 LKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQG 298
L G ID YR+ + +K+ + WS + + RIDYF S+ L+ R+ ++
Sbjct: 159 LDAG-FIDTYRYFYPDKEGIYSW-WSYRFKAREKNAGWRIDYFCTSKALESRLEDAKI-- 214
Query: 299 HGIELEGFYGSDHCPVSLEL 318
L +GSDHCPV L+
Sbjct: 215 ----LTNVFGSDHCPVELDF 230
>gi|333394549|ref|ZP_08476368.1| exodeoxyribonuclease III [Lactobacillus coryniformis subsp.
coryniformis KCTC 3167]
Length = 257
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 83/284 (29%), Positives = 143/284 (50%), Gaps = 43/284 (15%)
Query: 40 DPLKFVTWNANSLLLRVKNNWPEF-----SNFITTFDPDVIALQILMRALSSPPFKNYQI 94
+ LKF++WN N L VK N+ EF ++F + + A QI L+ P + Y
Sbjct: 2 NALKFISWNVNGLRAVVKKNFMEFFEQQDADFFCIQETKLQAGQI---ELTLPGYYQY-- 56
Query: 95 WWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPN 153
W+ A+ K Y+GTA+ K +P V++ + +++ +GR+I E++ FYLL Y PN
Sbjct: 57 -WNYAERKGYSGTAIFTKH--EPLNVTYGM--GVAEHDQEGRLITLEYKDFYLLTCYTPN 111
Query: 154 NGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLN 212
+ K + + R W+ + ++ + K P+I+CGDLNV+HE ID+ +
Sbjct: 112 SQTKLKRLDY--RMSWEDAFRSYISTLNQKKPVIFCGDLNVAHEPIDLKN---------- 159
Query: 213 GYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYR 272
+K + GF+ ER +F +L G D++R+ + ++ +S+ N +
Sbjct: 160 -----DKTNHHNAGFSDEERAKFSQLLAAG-FTDSFRYFYPDQVTYSWWSYRFN--ARQN 211
Query: 273 GKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
RIDYF+ +++L+ ++ + L GSDHCPV L
Sbjct: 212 NAGWRIDYFVTADQLQPQLADAAI------LTDVLGSDHCPVML 249
>gi|302783529|ref|XP_002973537.1| hypothetical protein SELMODRAFT_99746 [Selaginella moellendorffii]
gi|300158575|gb|EFJ25197.1| hypothetical protein SELMODRAFT_99746 [Selaginella moellendorffii]
Length = 306
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 91/297 (30%), Positives = 148/297 (49%), Gaps = 46/297 (15%)
Query: 37 SKKDPLKFVTWNANSL--LLRVKNNWPE----FSNFITTFDPDVIALQIL------MRAL 84
S+K+ +K ++WN N L ++ KN E + + D DV+ LQ + A+
Sbjct: 33 SEKNLVKVISWNVNGLRACMKRKNELEEEGSALARLADSEDFDVLCLQETKLQEKDVEAI 92
Query: 85 SSPPFKNY-QIWWSLADSK--YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEF 141
Y +W+ + SK Y+G AL+ + +P V++ L + +++ +GRV+ AEF
Sbjct: 93 KQKILGGYSNSFWTCSTSKLGYSGCALISR--IKPLSVTYGLGIS--QHDGEGRVVTAEF 148
Query: 142 ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDV 200
+TF+L++ Y PN+G + E ++ R +WD ++L+ KP+I GDLN +HEEID+
Sbjct: 149 DTFFLVSVYVPNSGQRLERLTY-RTTEWDPAFSTYLLELEKRKPVIVTGDLNCAHEEIDI 207
Query: 201 SHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCG 260
P+ NK GFT ER F + L+D +R K+ + G
Sbjct: 208 YDPD------------GNKR---SAGFTSEERTSFQTNFIDKGLVDTFR---KQHPLAVG 249
Query: 261 FS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
F+ WS + + K R+DYF+VS+ L C + + L GSDHCP+ L
Sbjct: 250 FTYWSYRSNARPQNKGWRLDYFLVSQGL-----VCSVADSYV-LPQLDGSDHCPIGL 300
>gi|224024813|ref|ZP_03643179.1| hypothetical protein BACCOPRO_01544 [Bacteroides coprophilus DSM
18228]
gi|224018043|gb|EEF76047.1| hypothetical protein BACCOPRO_01544 [Bacteroides coprophilus DSM
18228]
Length = 251
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 81/282 (28%), Positives = 135/282 (47%), Gaps = 36/282 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L F T D D LQ + F+ Y +W+ A
Sbjct: 1 MKLISWNVNGLRACCDKG---FREAFQTLDADFFCLQETKMQEGQLDLSFEGYTSYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ +P V++ L ++ +GRVI E + FYL+ Y PN+ ++
Sbjct: 58 EKKGYSGTAIFTH--LKPLNVTYGLGIDV--HDHEGRVITLEMDNFYLVTVYTPNS--QD 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R W+ + ++L+ K P++ CGDLNV+H+EID+ +P+ ++N
Sbjct: 112 GLKRLDYRMTWEDDFRNYLLELDKKKPVLVCGDLNVAHKEIDLKNPK---TNRMNA---- 164
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
GFT ER++F +L G ID +R+ + E+ + WS + + R
Sbjct: 165 --------GFTDQEREKFQILLDAG-FIDTFRYFYPEQTGIYSW-WSYRFKAREKNAGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
IDYF+ S L D++ + ++ +GSDHCPV + L+
Sbjct: 215 IDYFLASRRLADKLESAKIHTE------IFGSDHCPVEVTLN 250
>gi|427393372|ref|ZP_18887150.1| exodeoxyribonuclease III (xth) [Alloiococcus otitis ATCC 51267]
gi|425730590|gb|EKU93424.1| exodeoxyribonuclease III (xth) [Alloiococcus otitis ATCC 51267]
Length = 275
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 87/301 (28%), Positives = 134/301 (44%), Gaps = 50/301 (16%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFSN----FITTFDPDVIALQILMRALSSPP------- 88
+KF++WN +SL L +N + S I + PDV+A+Q + P
Sbjct: 1 MKFISWNIDSLNAALTSDSNRAQMSRQVLETIQDYQPDVLAIQETKLSAKGPTKKHAKRL 60
Query: 89 ---FKNYQIWW----SLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEF 141
F +Y W A YAG + KK P+ V++ + +GR+I EF
Sbjct: 61 EEWFPDYDYAWVSSVEPARKGYAGNMVFYKKDLSPE-VTYPRIDAPEPMDSEGRMITLEF 119
Query: 142 ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDV 200
+ FY Y PN G + R++WDK+ ++ + KP+I GD NV+H+EID+
Sbjct: 120 DNFYFTQVYTPNAG--SQLARLGERQEWDKQYANYLTSLDAAKPVIAAGDFNVAHQEIDL 177
Query: 201 SHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCG 260
+HPE + GFT ER+ F +L G D++R H D++
Sbjct: 178 AHPE---------------NNHHSAGFTDEEREGFSHLLSRG-FTDSFR--HVNGDVEGV 219
Query: 261 FSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
+SW + K RIDYF+ S+ L D++ EM G DH P+ LE+
Sbjct: 220 YSWWAQRVKTSKENNSGWRIDYFLTSDRLSDQVEKSEMVDSGPR------QDHTPIYLEI 273
Query: 319 S 319
+
Sbjct: 274 N 274
>gi|81428949|ref|YP_395949.1| exodeoxyribonuclease III [Lactobacillus sakei subsp. sakei 23K]
gi|78610591|emb|CAI55642.1| Exodeoxyribonuclease III [Lactobacillus sakei subsp. sakei 23K]
Length = 254
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 86/292 (29%), Positives = 146/292 (50%), Gaps = 54/292 (18%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTF---DPDVIALQ-ILMRA----LSSPPFKNYQ 93
+KF++WN N L +K +F+TTF D D LQ M+A L P + Y
Sbjct: 1 MKFISWNVNGLRAVLK------KDFMTTFEQFDADFFCLQETKMQAGQVELDLPGYHQY- 53
Query: 94 IWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAP 152
++ A+ K Y+G A+ K +P V++ +++ +++ +GRVI E+ F+L+ Y P
Sbjct: 54 --FNYAEKKGYSGAAIFTKH--EPLNVTYGIQQP--EHDHEGRVITLEYPQFFLITCYTP 107
Query: 153 NNGWKEEENSFQR---RRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAA 208
N+ +N +R R W+ + +V Q + KP+I+CGDLNV+HE ID+ +
Sbjct: 108 NS-----QNQLKRLDYRMTWENAFRAYVQQLGTQKPVIFCGDLNVAHEAIDLKN------ 156
Query: 209 AKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI 268
++ + GF+ ER + +L+ G D +R+ + ++ D WS
Sbjct: 157 ---------DRTNHKSAGFSDEERVQMTTLLQSG-FTDTFRYFYPDQ-TDIYSWWSYRFH 205
Query: 269 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 320
+ RIDYFI S+EL+ +++ ++ YGSDHCPV L+ +
Sbjct: 206 ARDNNAGWRIDYFITSDELQPKLMDAKIHTE------IYGSDHCPVELDTQD 251
>gi|366090151|ref|ZP_09456517.1| exodeoxyribonuclease [Lactobacillus acidipiscis KCTC 13900]
Length = 275
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 88/300 (29%), Positives = 136/300 (45%), Gaps = 50/300 (16%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFSN----FITTFDPDVIALQILMRALSSPP------- 88
+K ++WN +SL L +N S I+T+D DVIA+Q + P
Sbjct: 1 MKLISWNIDSLNAALTSDSNRALLSRDVLKTISTYDADVIAIQETKLSAKGPTKKHVEVL 60
Query: 89 ---FKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEF 141
F +Y + W A YAGT + KK P V++ + +GR+ EF
Sbjct: 61 NDFFPDYALAWRSSEEPARKSYAGTMFIYKKSLDPT-VTYPQIGAPATMDQEGRITTLEF 119
Query: 142 ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDV 200
E ++ Y PN+G K + R+ WD++ E++ KP+I GD N +HEEID+
Sbjct: 120 EKCFVTQVYTPNSGNKLDR--LSDRQVWDQKYIEYLQTLDQQKPVISSGDFNCAHEEIDL 177
Query: 201 SHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCG 260
+HP+ + GFT ER F +L+ G D++R +H ++
Sbjct: 178 AHPD---------------RNHRSAGFTDEERIDFTKLLESG-FNDSFRTVH--GNVTGA 219
Query: 261 FSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
+SW + K RIDY++VS+ +KD+II EM G DH P+ LE+
Sbjct: 220 YSWWAQRVKTSKTNNSGWRIDYYLVSDRIKDKIIKSEMIDSGTR------QDHTPIYLEI 273
>gi|157127237|ref|XP_001654881.1| ap endonuclease [Aedes aegypti]
gi|108872984|gb|EAT37209.1| AAEL010781-PA [Aedes aegypti]
Length = 612
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 86/284 (30%), Positives = 134/284 (47%), Gaps = 40/284 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPP-----FKNYQIWW 96
K +WN L V +F PD++ +Q P K Y +W
Sbjct: 360 FKISSWNVAGLRSWVGKGG---LDFFEHEKPDILCIQETKCVDDQLPEEVRHIKGYHPYW 416
Query: 97 SLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 156
YAG A+ KK P V++ L + + DGR++ AE+E F+L+ Y PN G
Sbjct: 417 LCKPGGYAGVAIYSKK--MPFNVTYGLGDE--EQDADGRLLTAEYEKFFLVCVYVPNAG- 471
Query: 157 KEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 215
+ +R +WD++ +++ K P+I CGD+NV+HEEID+++P+
Sbjct: 472 -RGLVTLPKRMRWDEKFHKYLKDLDAKKPVILCGDMNVAHEEIDLANPKT---------- 520
Query: 216 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGF-SWSGNPIGKYRGK 274
NK++ GFT ER+ +L G +D +R L+ E+ F ++ GN K G
Sbjct: 521 --NKKNA---GFTPEEREGMTKLLSLG-FVDTFRQLYPEQSGAYTFWTYMGNARAKNVG- 573
Query: 275 RMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
R+DYFI SE +++ + G YGSDHCP++L L
Sbjct: 574 -WRLDYFITSERFVGKVV------DNVIRSGVYGSDHCPLTLFL 610
>gi|291528729|emb|CBK94315.1| exodeoxyribonuclease III [Eubacterium rectale M104/1]
Length = 251
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/282 (28%), Positives = 135/282 (47%), Gaps = 38/282 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+KF++WN N L V+ F +F + D D +Q L Y +W+ A
Sbjct: 1 MKFISWNVNGLRACVQKG---FLDFFNSIDADFFCIQESKLQAGQIDLDLPGYHQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K +P VS+ + +++ +GRVI E++ FYL+ Y PN+ +
Sbjct: 58 EKKGYSGTAIFAKN--EPLSVSYGI--GIEEHDKEGRVITLEYDNFYLVTCYTPNS--QN 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R +W+ +E++ K P++ CGDLNV+H EID+ +P
Sbjct: 112 ELKRLPYRMQWEDDFREYLKTLDAKKPVVLCGDLNVAHNEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
K + GF+ ER + +L G D +R+ + D + +S WS + +
Sbjct: 158 -KTNRKNAGFSDEERAKMTELLGSG-FTDTFRYFY--PDAEGIYSWWSYRFKAREKNAGW 213
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYFI S+ + D++ + + GSDHCPV +++
Sbjct: 214 RIDYFITSKRINDKLQKAAIHTDVL------GSDHCPVEVDI 249
>gi|238922913|ref|YP_002936426.1| exodeoxyribonuclease [Eubacterium rectale ATCC 33656]
gi|238874585|gb|ACR74292.1| exodeoxyribonuclease [Eubacterium rectale ATCC 33656]
Length = 251
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/282 (28%), Positives = 135/282 (47%), Gaps = 38/282 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+KF++WN N L V+ F +F + D D +Q L Y +W+ A
Sbjct: 1 MKFISWNVNGLRACVQKG---FLDFFNSIDADFFCIQESKLQAGQIDLDLPGYHQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K +P VS+ + +++ +GRVI E++ FYL+ Y PN+ +
Sbjct: 58 EKKGYSGTAIFAKN--EPLSVSYGI--GIEEHDKEGRVITLEYDNFYLVTCYTPNS--QN 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R +W+ +E++ K P++ CGDLNV+H EID+ +P
Sbjct: 112 ELKRLPYRMQWEDDFREYLKTLDAKKPVVLCGDLNVAHNEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
K + GF+ ER + +L G D +R+ + D + +S WS + +
Sbjct: 158 -KTNRKNAGFSDEERAKMTELLGSG-FTDTFRYFY--PDAEGIYSWWSYRFKAREKNAGW 213
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYFI S+ + D++ + + GSDHCPV +++
Sbjct: 214 RIDYFITSKRINDKLKKAAIHTDVL------GSDHCPVEVDI 249
>gi|441499473|ref|ZP_20981659.1| Exodeoxyribonuclease III [Fulvivirga imtechensis AK7]
gi|441437006|gb|ELR70364.1| Exodeoxyribonuclease III [Fulvivirga imtechensis AK7]
Length = 258
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 93/287 (32%), Positives = 139/287 (48%), Gaps = 44/287 (15%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--------ILMRALSSPPFKNYQ 93
L V+WN N L +K F + + DPD++ LQ I P +K Y
Sbjct: 4 LSLVSWNVNGLRAIIKKG---FITSLKSLDPDILCLQETKGQVEDIKTALQLLPDYKAY- 59
Query: 94 IWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPN 153
+ S Y+GTA+L KK +P +++ L +++ +GRVI AEF+ F+L+N Y PN
Sbjct: 60 VNCSKLKKGYSGTAILSKK--EPLDITYDLGHE--EHDQEGRVITAEFDHFFLVNVYTPN 115
Query: 154 NGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLN 212
+G + N + R+ WD + KP++ CGDLNV+HEEID+ A AK N
Sbjct: 116 SG--QGLNRLEYRQAWDVIFLNHLRSLEQRKPVVLCGDLNVAHEEIDI------ARAKQN 167
Query: 213 GYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKY 271
NK G+T E F + L+ G +D +R E + ++ W+ +
Sbjct: 168 ----YNKS----AGYTQQEIDGFKSYLEHG-FVDTFRHFFPE---EVKYTYWNQMFNSRA 215
Query: 272 RGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
R RIDYF+VS L ++ + + F+GSDHCPV L L
Sbjct: 216 RNVGWRIDYFLVSPALLGQVKTAAIH------DQFHGSDHCPVELVL 256
>gi|333984917|ref|YP_004514127.1| exodeoxyribonuclease III [Methylomonas methanica MC09]
gi|333808958|gb|AEG01628.1| exodeoxyribonuclease III Xth [Methylomonas methanica MC09]
Length = 254
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 90/290 (31%), Positives = 139/290 (47%), Gaps = 47/290 (16%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ-------ILMRALSSPPFKNYQI 94
+K ++WN N + + F + + FD D I LQ + +AL +Y +
Sbjct: 1 MKIISWNVNGIRAVQEKG---FRDSLQHFDADCILLQETKAQDDQVHKALEG--IDHYHV 55
Query: 95 WWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPN 153
+ + A+ K Y+G ALL + P +V + +++ +GRV++AEFE+FYLLN Y PN
Sbjct: 56 YCNSAERKGYSGVALLTRN--PPLRVVHDM--GIAEHDQEGRVLVAEFESFYLLNVYVPN 111
Query: 154 NGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLN 212
+G + R+ WD + ++ Q KP+I CGD NV+H+ ID++ P+ A N
Sbjct: 112 SG--DGLARLDYRQTWDAALLAYLQQLQNQKPVIACGDFNVAHQAIDIARPK----ANYN 165
Query: 213 GYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYR 272
G+T E F + G ID++R H E +SW G R
Sbjct: 166 ----------KSAGYTQTEIDGFSRFTEAG-FIDSFRHFHPET---VAYSWWSYRAGA-R 210
Query: 273 GKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 320
K + RIDY + S+ L RI + L GSDHCPV +++SE
Sbjct: 211 AKNIGWRIDYVLTSQALLPRIQDSFI------LPEIMGSDHCPVGIQISE 254
>gi|225569150|ref|ZP_03778175.1| hypothetical protein CLOHYLEM_05230 [Clostridium hylemonae DSM
15053]
gi|225161949|gb|EEG74568.1| hypothetical protein CLOHYLEM_05230 [Clostridium hylemonae DSM
15053]
Length = 250
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 85/284 (29%), Positives = 138/284 (48%), Gaps = 42/284 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQIL-----MRALSSPPFKNYQIWW 96
+K ++WN N + V+ F +F D D+ +Q L +P + Y W
Sbjct: 1 MKCISWNVNGIRACVQKG---FMDFFQEADADIFCIQETKMQEGQLELETPGYFQY---W 54
Query: 97 SLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNG 155
+ A+ K Y+GTA+ KK + +SF+ +++ +GRVI EFE FY + Y PN+
Sbjct: 55 NYAERKGYSGTAVFTKK----EPLSFTCGIGIEEHDKEGRVITLEFEEFYFVTVYTPNS- 109
Query: 156 WKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY 214
+ E R +W+ ++ + KP+I+CGDLNV+ EEID+ +P
Sbjct: 110 -QSELARLSYRMEWEDAFLAYLKKLEEKKPVIFCGDLNVAAEEIDLKNP----------- 157
Query: 215 VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGK 274
K + GFT ER++F I G +D +R+ + +++ + WS + +
Sbjct: 158 ----KTNRKNAGFTDEEREKFRKIKASG-FVDTFRYFYPDEEGIYSW-WSYRFRAREKNA 211
Query: 275 RMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF VS+ LK+R+ + + GSDHCPV L+L
Sbjct: 212 GWRIDYFCVSQSLKERLEDARIHTDVM------GSDHCPVELDL 249
>gi|325679379|ref|ZP_08158964.1| exodeoxyribonuclease III [Ruminococcus albus 8]
gi|324108976|gb|EGC03207.1| exodeoxyribonuclease III [Ruminococcus albus 8]
Length = 250
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 84/282 (29%), Positives = 133/282 (47%), Gaps = 37/282 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPF--KNYQIWWSLA 99
+K ++WN N ++ F +F + D D+ +Q F + Y ++ A
Sbjct: 1 MKLISWNVNGFRACLQKG---FEDFFKSADADIFCIQETKMQPDQADFSPEGYHKYFHSA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ K +PK V++ L + +GRVI E++ FY + Y PN +
Sbjct: 58 VKKGYSGTAVYTKN--EPKAVTYGLNGA---HTDEGRVITCEYDDFYFVCCYVPNA--QN 110
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R +++ ++ ++ KP+I+CGDLNV+HEEID+ +P
Sbjct: 111 ELKRIDYRMEFEDDMRAYLCGLDKLKPVIYCGDLNVAHEEIDLKNP-------------- 156
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + G GF+ ER +F +L G D +R L+ E + WS + R
Sbjct: 157 -KSNVGNAGFSDQERGKFTELLAAG-FADTFRRLYPETTGVYSW-WSYRFNARKNNAGWR 213
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
IDYF+VSE L D++ G L GSDHCPV L+++
Sbjct: 214 IDYFVVSERLMDKV------GDSKILTDVMGSDHCPVQLDIT 249
>gi|303229843|ref|ZP_07316620.1| exodeoxyribonuclease III [Veillonella atypica ACS-134-V-Col7a]
gi|303231217|ref|ZP_07317955.1| exodeoxyribonuclease III [Veillonella atypica ACS-049-V-Sch6]
gi|302514124|gb|EFL56128.1| exodeoxyribonuclease III [Veillonella atypica ACS-049-V-Sch6]
gi|302515473|gb|EFL57438.1| exodeoxyribonuclease III [Veillonella atypica ACS-134-V-Col7a]
Length = 251
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 86/285 (30%), Positives = 138/285 (48%), Gaps = 44/285 (15%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQIL-----MRALSSPPFKNYQIWW 96
+K ++WN N L V F + D D+ LQ L P ++ Q W
Sbjct: 1 MKLISWNVNGLRAAVTKG---FIDSFNELDADIFCLQETKLQPHQIELELPGYE--QFWN 55
Query: 97 SLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 156
S Y+GTA+ + +P V+ + +++ +GRVI AE++ FYL+ Y PN+
Sbjct: 56 SAVKKGYSGTAVFTR--IKPIAVTNGI--GIEEHDQEGRVITAEYDNFYLVCCYTPNS-- 109
Query: 157 KEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 215
+ E R W+ + ++L+ K P+I CGDLNV+H EID+ +P
Sbjct: 110 QRELARLDYRMTWEDAFRAYLLELDKKKPVILCGDLNVAHNEIDLKNP------------ 157
Query: 216 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 275
K + GF+ ER + +L+ G D +R+L+ D +SW + +GK R +
Sbjct: 158 ---KTNRKNAGFSDEERAKMTELLESG-FTDTFRYLY--PDAVDEYSW-WSYMGKARDRN 210
Query: 276 M--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
+ RIDYFI S+ L D+I ++ + +GSDHCPV L++
Sbjct: 211 VGWRIDYFITSKRLDDKIKEAKIH------QQIFGSDHCPVELDI 249
>gi|268318601|ref|YP_003292257.1| exodeoxyribonuclease [Lactobacillus johnsonii FI9785]
gi|262396976|emb|CAX65990.1| exodeoxyribonuclease [Lactobacillus johnsonii FI9785]
Length = 275
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 86/302 (28%), Positives = 135/302 (44%), Gaps = 52/302 (17%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFS------NFITTFDPDVIALQILMRALSSPP------- 88
++ ++WN +SL + ++ P N I D D+IA+Q + P
Sbjct: 1 MRLISWNIDSLNAALTSDSPRAQLTRSVLNTIKEKDADIIAIQETKLRSTGPTKKHQEVL 60
Query: 89 ---FKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVSFSL-EKTALKYEPDGRVILAE 140
F NY W A YAGT L K P+ ++ + YE GR++ E
Sbjct: 61 AEMFPNYDYVWRSSEEPARKGYAGTMFLYKNTLTPEVTKPAIGAPDTMDYE--GRILTLE 118
Query: 141 FETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEID 199
F+ +Y+ Y PN+G E + R+ WD++ E++ + KP+I GD NV+H ID
Sbjct: 119 FDNYYVTQVYTPNSG--NELKRLEDRQIWDEKYTEYLQKLDKSKPVIASGDYNVAHTPID 176
Query: 200 VSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDC 259
+ HPE + GFT ER+ F +LK G D +R +H +++
Sbjct: 177 LKHPE---------------NNHHNAGFTDEERQDFDKLLKLG-FTDTFRKVH--GNIEG 218
Query: 260 GFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLE 317
+SW + K RIDY+IVS+ + D++ EM G DHCP+ LE
Sbjct: 219 VYSWWAQRVRTSKANNSGWRIDYYIVSDRIADQVTKSEMIDTGDR------KDHCPIMLE 272
Query: 318 LS 319
++
Sbjct: 273 IN 274
>gi|256847688|ref|ZP_05553133.1| exodeoxyribonuclease III [Lactobacillus coleohominis 101-4-CHN]
gi|256715377|gb|EEU30353.1| exodeoxyribonuclease III [Lactobacillus coleohominis 101-4-CHN]
Length = 275
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 88/300 (29%), Positives = 134/300 (44%), Gaps = 50/300 (16%)
Query: 42 LKFVTWNANSL---LLRVKNNWPEFSNF---ITTFDPDVIALQILMRALSSPP------- 88
+KF++WN +S+ L E + I PDVIA+Q + + P
Sbjct: 1 MKFISWNIDSINAALTGTSTRAGETRDVLHKIADLVPDVIAIQETKLSKNGPTKKHFTVL 60
Query: 89 ---FKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEF 141
F +YQ+ W A YAGT L + PK +S+ + +GR+I EF
Sbjct: 61 NELFPDYQVAWRSSVEPARKGYAGTMYLYRTGLTPK-ISYPQIGAPEPMDNEGRMITLEF 119
Query: 142 ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDV 200
F++ Y PN+G R+ WD R +E++ Q KP+I GD NV+HE ID+
Sbjct: 120 PYFFVTEVYTPNSG--TGLRRLAERQIWDDRYREYLQQLDQQKPVIASGDFNVAHEPIDL 177
Query: 201 SHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCG 260
+HPE + GFT ER+ F +LK G D++R LH E+
Sbjct: 178 AHPE---------------NNHHSAGFTDEEREHFTKLLKAG-FTDSFRHLHPEE--KGA 219
Query: 261 FSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
+SW + K RIDY++VS+ + D+++ M G DH P+ L++
Sbjct: 220 YSWWAQRVITSKQNNSGWRIDYWLVSDRIADKVVKSSMIDTGAR------RDHTPIELDI 273
>gi|350645454|emb|CCD59806.1| ap endonuclease, putative [Schistosoma mansoni]
Length = 281
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/220 (35%), Positives = 113/220 (51%), Gaps = 29/220 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ----ILMRALSSPPFKNYQIWWS 97
K V+WN N + +KNN E+ I + D+ +Q L + S +YQ +WS
Sbjct: 65 FKIVSWNVNGIRAVIKNNGMEY---IKKENADIFCIQETKCPLHKIPSEAKVPSYQSFWS 121
Query: 98 LAD-SKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 156
AD + YAGTAL K P KV++ + K ++ +GRVI AE++ FYL+ Y PN+G
Sbjct: 122 SADKAGYAGTALFSK--ISPIKVTYGIGKKM--HDDEGRVITAEYDKFYLVTAYVPNSGQ 177
Query: 157 KEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 215
+ R ++WD E++ + S KP+I CGDLNV+HEEID++ PE
Sbjct: 178 GLIRLPY-REKEWDPDFLEYLRKLDSTKPVIVCGDLNVAHEEIDLARPE----------- 225
Query: 216 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEK 255
+ GFT ER F +L LID YR + ++
Sbjct: 226 ----TNHKTAGFTDQERSGFTKLLSSANLIDTYRHFYPDR 261
>gi|403385824|ref|ZP_10927881.1| exodeoxyribonuclease [Kurthia sp. JC30]
Length = 252
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 85/283 (30%), Positives = 136/283 (48%), Gaps = 40/283 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+KFV+WN N + +K F + D D +Q Y+ +W+ A
Sbjct: 1 MKFVSWNVNGIRACLKKG---FLAYFEQVDADFFCIQESKCQAGQVEIDLPGYEQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ K P V + + E +GR+I E+E FY++ Y PN+ K
Sbjct: 58 LRKGYSGTAIFTKHT--PLSVKYGVGDRDT--EDEGRIITLEYERFYVVTVYTPNS--KR 111
Query: 159 EENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R +W+ ++ ++++ KP+I+CGDLNV+HE ID+ + + P
Sbjct: 112 DLARLDERLEWEDNLRAYLIELDQQKPVIYCGDLNVAHEAIDLKNAK------------P 159
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
N G GFT ER + +L G D +R ++ ++D F+W + + K R + +
Sbjct: 160 NV---GNSGFTNEERGKMTLLLNSG-FTDTFRAMYPQEDNR--FTW-WSYMNKVRERNIG 212
Query: 277 -RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYFIVS+ L + ++ + GSDHCPV LEL
Sbjct: 213 WRIDYFIVSDRLNQHVTNADIHDQQL------GSDHCPVVLEL 249
>gi|189238676|ref|XP_969559.2| PREDICTED: similar to ap endonuclease [Tribolium castaneum]
Length = 1246
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 84/285 (29%), Positives = 140/285 (49%), Gaps = 45/285 (15%)
Query: 44 FVTWNANSLLLRVKNNWPEFSNFITTFD-PDVIALQILMRALSSPP-----FKNYQIWWS 97
TWN + L +K + I +D PD++ +Q A+ P + Y+ W
Sbjct: 995 ITTWNVDGLRSWLKKGCLD----ILKYDKPDILCIQETKCAVYKLPEEVKTIEGYETLWC 1050
Query: 98 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 156
+D YAG ++VK +P V + ++ + +++ +GR I E+ETF+++N Y P+ G
Sbjct: 1051 CSDKDGYAGVGIMVKD--KPLNVIYGID--SKEHDTEGRCITVEYETFFVVNVYVPHAG- 1105
Query: 157 KEEEN--SFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNG 213
N + +R W+++ ++F+ S KP+I CGD+NV+H+EID+++P
Sbjct: 1106 ---RNLVTLPKRLDWNEQFEKFIKNLDSQKPVIICGDMNVAHKEIDLANP---------- 1152
Query: 214 YVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRG 273
K + GF++ ER A L G +D YR L+ EK+ F W +
Sbjct: 1153 -----KTNTNSAGFSVEERDGMTAFLGNG-YVDIYRHLYPEKEKAYTF-WIYMRNARPNN 1205
Query: 274 KRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
R+DYF+VS+ D + C+ H GSDHCP+SL +
Sbjct: 1206 VGWRLDYFLVSQRFVDNV--CDNIIHS----DVMGSDHCPLSLHI 1244
>gi|325285209|ref|YP_004260999.1| exodeoxyribonuclease III Xth [Cellulophaga lytica DSM 7489]
gi|324320663|gb|ADY28128.1| exodeoxyribonuclease III Xth [Cellulophaga lytica DSM 7489]
Length = 254
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 82/287 (28%), Positives = 141/287 (49%), Gaps = 45/287 (15%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQI-------LMRALSSPPFKNYQI 94
+ V+WN N + VK EF + +PD++ +Q + +ALS P +N+ +
Sbjct: 1 MHIVSWNVNGVRAVVK---KEFFESVKYMNPDILCIQETKAQDNEVAKALS--PLENFSL 55
Query: 95 WWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPN 153
+ A+ K Y+GTA L K +E ++ +GRV+ E+E FYL+N Y PN
Sbjct: 56 ASNSANKKGYSGTATLSSTKPLTIKADIGIEA----HDTEGRVLCTEYENFYLVNVYVPN 111
Query: 154 NGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLN 212
+G K + + R++WDK +++ KP+I CGD NV+H+ ID+ +
Sbjct: 112 SGQKLDR--LEYRKQWDKDFLDYLKNLEKKKPVIACGDFNVAHKAIDLKN---------- 159
Query: 213 GYVPPNKEDWGQ-PGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKY 271
+K ++ + G+T E + +G +D++R LH ++ + WS +
Sbjct: 160 -----DKSNYNKTAGYTQTEIDGMNNFIADG-FVDSFRMLHPDEVVYT--FWSYRFKSRE 211
Query: 272 RGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
R RIDYF+VS+ +KD++ + GSDHCP+ L++
Sbjct: 212 RNTGWRIDYFLVSQSIKDKVKEVTV------FSDIMGSDHCPIGLKI 252
>gi|328870805|gb|EGG19178.1| transcription factor IIIC-gamma subunit [Dictyostelium
fasciculatum]
Length = 1238
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 85/285 (29%), Positives = 129/285 (45%), Gaps = 40/285 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPFK------NYQIW 95
+K V+WN K F +++ PD++ LQ A++ P Y
Sbjct: 115 IKIVSWNVAGFGACTKKG---FKDYLIKEQPDIVCLQETKIAVAKVPKSEIPEGYTYHFN 171
Query: 96 WSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNG 155
+ + + GTALL K K +S + K++ +GRV+ AEFE FY++N Y PN+G
Sbjct: 172 PCIEKTGHHGTALLTK----IKPISITSGIGISKHDQEGRVVTAEFEDFYVVNAYVPNSG 227
Query: 156 WKEEE---NSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKL 211
+E R ++WD +++ + KP++WCGDLNV+H EID+++P
Sbjct: 228 VDRKEPLKRLGYRTKEWDVDFFKYMSDLNTKKPVVWCGDLNVAHTEIDLANP-------- 279
Query: 212 NGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKY 271
K + GFTI ER F L G ID +R + K F WS +
Sbjct: 280 -------KSNSRTAGFTIEERTSFSGHLNSG-FIDTHRHFNPGKTGTYTF-WSYMGGARA 330
Query: 272 RGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
+ R+DYFIV I A ++ GSDHCP+ +
Sbjct: 331 KNAGWRLDYFIVPATFIGSIAASFIRSK------VQGSDHCPIGI 369
>gi|384108936|ref|ZP_10009823.1| exodeoxyribonuclease III [Treponema sp. JC4]
gi|383869507|gb|EID85119.1| exodeoxyribonuclease III [Treponema sp. JC4]
Length = 276
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 92/302 (30%), Positives = 139/302 (46%), Gaps = 56/302 (18%)
Query: 43 KFVTWNANSLLLRVKNNWP------EFSNFITTFDPDVIALQILMRALSSPP-------- 88
KF++WN +SL + + + I +D D+IA+Q P
Sbjct: 3 KFISWNIDSLNAALTSTSARAVMSQDVLRKIAAYDADIIAIQETKLPAEGPSATHVELLK 62
Query: 89 --FKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFE 142
F Y W A YAGT +L K+ + +K+ L + +GR+I EF+
Sbjct: 63 SYFTGYHFEWVSSVPPAKKGYAGTMILYKEGLKAEKIVPKLGAPD-TMDDEGRLIALEFD 121
Query: 143 TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVS 201
FY +N Y PN+G + + R+ WD +++ K +I CGD NV+H+EID++
Sbjct: 122 NFYFVNVYTPNSG--DGLKRLKERQLWDSLYADYLSSLDQKKAVIACGDFNVAHKEIDLA 179
Query: 202 HP--EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKE-KDMD 258
+P F+A GFT ER+ F +L +G D++RF+H + KD+
Sbjct: 180 NPASNHFSA-----------------GFTDEEREGFTNLLAKG-FTDSFRFIHGDVKDI- 220
Query: 259 CGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
+SW G I K RIDYFIVS+ +KD+I EM G DH P+ L
Sbjct: 221 --YSWWGQRIKTSKINNSGWRIDYFIVSDRIKDKIQKSEMIDSGPR------QDHTPILL 272
Query: 317 EL 318
E+
Sbjct: 273 EI 274
>gi|328702292|ref|XP_001952290.2| PREDICTED: recombination repair protein 1-like [Acyrthosiphon
pisum]
Length = 317
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 85/279 (30%), Positives = 138/279 (49%), Gaps = 37/279 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPP----FKNYQIWWS 97
LK ++WN L +K + E+ + DPD+I LQ + P Y+I+ +
Sbjct: 64 LKIISWNVAGLRAWLKKDVVEY---LKKEDPDIICLQEIKCTEKQMPDEAKLPGYKIYIN 120
Query: 98 LAD-SKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 156
D + Y+G AL K +P V E L + +GRVI AE+E F+L++TY PN G
Sbjct: 121 SGDKAGYSGVALYSKT--KPISVRMGKEIKDLD-DNEGRVIEAEYEQFFLVSTYIPNAGA 177
Query: 157 KEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 215
+ + +R KWD+ ++++ + + KP++ GDLNV+HEEID+++P
Sbjct: 178 GLK--TLPKRMKWDEAFRKYLKELDTKKPVVLTGDLNVAHEEIDIANP------------ 223
Query: 216 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 275
K + GFT ER +L++G +D +R L+ EK F W+ + +
Sbjct: 224 ---KTNTKSAGFTKEERDNMSLLLEQG-FVDTFRTLNPEKTGAYTF-WTYFHNSRAKNVG 278
Query: 276 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPV 314
R+DYFI S+ D + ++ + GSDHCP+
Sbjct: 279 WRLDYFITSKRFMDNVCDSTIRNEVL------GSDHCPI 311
>gi|424779917|ref|ZP_18206803.1| Exodeoxyribonuclease III [Catellicoccus marimammalium M35/04/3]
gi|422843456|gb|EKU27893.1| Exodeoxyribonuclease III [Catellicoccus marimammalium M35/04/3]
Length = 253
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 94/285 (32%), Positives = 130/285 (45%), Gaps = 40/285 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+KF++WN N L VK F + D D LQ L P + Y +W+ A
Sbjct: 1 MKFISWNVNGLRAAVKKG---FLDVFNQLDADFFCLQETKLQEGQIDLPLEGYTQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPK-KVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWK 157
+ K Y+GTA+ K QP V + L L +E GR+I E+ FYL+ Y PN +
Sbjct: 58 EKKGYSGTAIFAK---QPALSVQYGLGIEELDHE--GRLITLEYPEFYLVTCYTPNA--Q 110
Query: 158 EEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVP 216
E R +W+ +E++ Q KP+I CGDLNV+H+ ID+ +
Sbjct: 111 SELKRIDFRLQWEAAFREYLHQLDEKKPVIICGDLNVAHQNIDLKNWR------------ 158
Query: 217 PNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM 276
PN+ G+ GF+ ER F +L G D +R+L+ E + WS +
Sbjct: 159 PNR---GKAGFSDEERNAFTELLNTG-FTDTFRYLYPETTGVYSW-WSYRFHARENNAGW 213
Query: 277 RIDYFIVSEEL-KDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 320
RIDYF+VS L KD AC GSDHCPV L L
Sbjct: 214 RIDYFLVSNRLQKDIQEACIYT-------DILGSDHCPVGLTLDH 251
>gi|406897912|gb|EKD41704.1| hypothetical protein ACD_73C00569G0001 [uncultured bacterium]
Length = 250
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 88/285 (30%), Positives = 133/285 (46%), Gaps = 48/285 (16%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ-------ILMRALSSPPFKNYQI 94
+K ++WN N + + F +F+ + D+I LQ + L+ P +
Sbjct: 1 MKMISWNVNGIRSILGKG---FLDFVGSSCADIICLQETKAHPEQVDLTLNDYP---HHY 54
Query: 95 WWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNN 154
W S Y+GTA+ K QP ++ L +++ +GRVI EF +YL+N Y PN
Sbjct: 55 WNSAIKKGYSGTAIFCK--VQP--IASQLGIGIEEHDNEGRVITLEFSDYYLVNVYTPNA 110
Query: 155 GWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNG 213
+ E R KWD ++ + S KP+I+CGDLNV+H+EID+++P
Sbjct: 111 --QRELTRLDYRMKWDADFLNYLKKLESHKPVIFCGDLNVAHKEIDLANP---------- 158
Query: 214 YVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS--WSGNPIGKY 271
K + G GFT ER F IL+ G +D +R + GF WS +
Sbjct: 159 -----KTNQGNAGFTPQERDGFSKILESG-FVDTFRLFNNSG----GFYTWWSYMAGARP 208
Query: 272 RGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
R RIDYF S LK+++ + + + GSDHCPV L
Sbjct: 209 RNIGWRIDYFCTSYNLKNKVKSSAIHAQVM------GSDHCPVEL 247
>gi|205373614|ref|ZP_03226417.1| exodeoxyribonuclease [Bacillus coahuilensis m4-4]
Length = 195
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/219 (32%), Positives = 116/219 (52%), Gaps = 31/219 (14%)
Query: 103 YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENS 162
Y+GTA+ K +P KV++ +++ + +GR+I EF FY++ Y PN+ K + +
Sbjct: 7 YSGTAIFTKS--KPLKVTYGMDE---ERNSEGRMITLEFSDFYVVTMYTPNS--KRDLSR 59
Query: 163 FQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKED 221
+ R +W+ +Q ++ + + K P+I+CGDLNV+H E+DV + ++ +
Sbjct: 60 LEERLEWEDLVQGYLDKLNQKKPVIFCGDLNVAHTELDVKN---------------DRAN 104
Query: 222 WGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYF 281
G GFT ER++ +L G D YR+ + +D D WS + R RIDYF
Sbjct: 105 QGNSGFTQVEREKMNGLLDLG-FTDTYRYFNPARD-DQFTWWSYMKGVRERNIGWRIDYF 162
Query: 282 IVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 320
IVS + I ++ H YGSDHCP+ LELS+
Sbjct: 163 IVSTSFMNTISNSDIHDH------VYGSDHCPIVLELSK 195
>gi|330834656|ref|YP_004409384.1| exodeoxyribonuclease III Xth [Metallosphaera cuprina Ar-4]
gi|329566795|gb|AEB94900.1| exodeoxyribonuclease III Xth [Metallosphaera cuprina Ar-4]
Length = 256
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 92/284 (32%), Positives = 141/284 (49%), Gaps = 40/284 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ-----ILMRALSSPPFKNYQIWW 96
LK ++WN NSL + E I + + DV+ Q L S P++ Y I
Sbjct: 8 LKILSWNVNSLKSAIAKGLMEI---IKSEEYDVLMFQEIKTNQLPLDFQSLPYRAY-INP 63
Query: 97 SLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 156
S Y+GT L + +P V++ + K +++ +GRVI EF++ +++N Y PN G
Sbjct: 64 SKQKRGYSGTLTLTR--IEPISVTYGIGKE--EFDVEGRVISTEFKSMFVINVYFPNAGE 119
Query: 157 KEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVP 216
+ F+ R +++ QE+V GKP + CGD NV+HEEID++ P
Sbjct: 120 GLKRLDFKLR--FNRAFQEYVASL-GKPSVICGDFNVAHEEIDIARP------------- 163
Query: 217 PNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM 276
K++ GFT ERK F L G +D +R KE +S+ + K G
Sbjct: 164 --KDNVNHAGFTPEERKWFHEFLLSG-FVDTFRLFVKEPGHYSWWSYRFHAREKNIG--W 218
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 320
RIDY +VS+EL+ ++ E+ LE GSDH PV++E+SE
Sbjct: 219 RIDYCVVSKELESKVKKAEI------LEKVMGSDHAPVTVEISE 256
>gi|430751698|ref|YP_007214606.1| exodeoxyribonuclease III [Thermobacillus composti KWC4]
gi|430735663|gb|AGA59608.1| exodeoxyribonuclease III [Thermobacillus composti KWC4]
Length = 258
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 86/290 (29%), Positives = 140/290 (48%), Gaps = 38/290 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ---ILMRALSSPPFKNYQIWWSL 98
+K ++WN N L V F ++ D D++ +Q + L + Y+ +W+
Sbjct: 1 MKLISWNVNGLRSCVGKG---FLDYFRRADADIVCVQETKLQEGQLELELPEGYRQYWNC 57
Query: 99 ADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWK 157
A+ K Y+GTA+ + F+P V L +P+GRV+ EF F+L+N Y PN +
Sbjct: 58 AEKKGYSGTAVFTR--FEPLSVRKGLSDGD---DPEGRVLTLEFPAFFLVNVYTPNA--R 110
Query: 158 EEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVP 216
+ + + R W++R + ++ + KP++ CGDLNV+H EID+ + +F
Sbjct: 111 RDLSRLEYRIAWEERFRAYLKELDARKPVVVCGDLNVAHREIDLKNAKF----------- 159
Query: 217 PNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM 276
+ G GFT ER+ +L+ G D +R + ++ D WS P + R
Sbjct: 160 ----NRGNAGFTDEEREAMTRLLEAG-FTDTFRHFYPDR-TDAYTWWSFMPKVRERNIGW 213
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEASSDSE 326
RIDYF+VS L A ++ I+ G GSDHCPV L + + E
Sbjct: 214 RIDYFLVSARL-----APYLEDALID-SGIMGSDHCPVGLLMRDPGEQPE 257
>gi|410918464|ref|XP_003972705.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like [Takifugu
rubripes]
Length = 314
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 89/311 (28%), Positives = 154/311 (49%), Gaps = 46/311 (14%)
Query: 17 PALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIA 76
P L D T++ + N +K +WN + L VK + +++ +PDV+
Sbjct: 39 PILYEDPPDKMTSKDGRDAN-----MKITSWNVDGLRAWVKK---KGLDWVREENPDVLC 90
Query: 77 LQILMRALSSPPFKNYQI------WWSLADSK--YAGTALLVKKCFQPKKVSFSLEKTAL 128
LQ A S P + +W+ +D K Y+G A+L K +P KV++ + K
Sbjct: 91 LQETKCAEKSLPADITSMPEYPFKYWAGSDDKEGYSGVAMLSKT--EPIKVTYGIGKE-- 146
Query: 129 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 187
+++ +GRVI AEF +F+L+ Y PN+G R+ WD + ++ + KP++
Sbjct: 147 EHDKEGRVITAEFSSFFLVTVYVPNSG--RGLVRLDYRKTWDVDFRTYLSELDIQKPVVL 204
Query: 188 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 247
CGDLNV+H+EID+ +P+ NK++ GFT ER+ F +L+ G +D+
Sbjct: 205 CGDLNVAHQEIDLKNPK------------GNKKN---AGFTAEEREGFSQLLEAG-FVDS 248
Query: 248 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 307
+R L+ E+ F W+ + + R+DYF++S L + +++
Sbjct: 249 FRELYPEQTHAYSF-WTYMMNARDKNVGWRLDYFVLSSSLLPALCDSKIRNQ------VR 301
Query: 308 GSDHCPVSLEL 318
GSDHCP++L +
Sbjct: 302 GSDHCPITLHI 312
>gi|429759794|ref|ZP_19292289.1| exodeoxyribonuclease III [Veillonella atypica KON]
gi|429179014|gb|EKY20276.1| exodeoxyribonuclease III [Veillonella atypica KON]
Length = 251
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 86/285 (30%), Positives = 138/285 (48%), Gaps = 44/285 (15%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQIL-----MRALSSPPFKNYQIWW 96
+K ++WN N L V F + D D+ LQ L P ++ Q W
Sbjct: 1 MKVISWNVNGLRAAVTKG---FIDSFNELDADIFCLQETKLQPHQIELELPGYE--QFWN 55
Query: 97 SLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 156
S Y+GTA+ + +P V+ + +++ +GRVI AE++ FYL+ Y PN+
Sbjct: 56 SAVKKGYSGTAVFTR--IKPIAVTNGI--GIEEHDQEGRVITAEYDNFYLVCCYTPNS-- 109
Query: 157 KEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 215
+ E R W+ + ++L+ K P+I CGDLNV+H EID+ +P
Sbjct: 110 QRELARLDYRMTWEDAFRAYLLELDKKKPVILCGDLNVAHNEIDLKNP------------ 157
Query: 216 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 275
K + GF+ ER + +L+ G D +R+L+ D +SW + +GK R +
Sbjct: 158 ---KTNRKNAGFSDEERAKMTELLESG-FTDTFRYLY--PDAVDEYSW-WSYMGKARDRN 210
Query: 276 M--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
+ RIDYFI S+ L D+I ++ + +GSDHCPV L++
Sbjct: 211 VGWRIDYFITSKRLDDKIKEAKIH------QQIFGSDHCPVELDI 249
>gi|311110171|ref|ZP_07711568.1| exodeoxyribonuclease III [Lactobacillus gasseri MV-22]
gi|311065325|gb|EFQ45665.1| exodeoxyribonuclease III [Lactobacillus gasseri MV-22]
Length = 265
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 84/293 (28%), Positives = 141/293 (48%), Gaps = 41/293 (13%)
Query: 32 SSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMR-----ALSS 86
+SE ++ +KF++WN N L +++ F N T D D+ A+Q +
Sbjct: 2 TSELIERRIIMKFMSWNVNGLRAALRHG---FVNTFTDLDADIFAIQDTRVEPNEVQIDL 58
Query: 87 PPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYL 146
P + YQ W YAGTA+ K+ K ++ + + + +GR I EF FY
Sbjct: 59 PGY--YQYWNYAKRKGYAGTAVFTKE----KPITVANGFGVPEVDGEGRSITLEFSNFYF 112
Query: 147 LNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEF 205
++ P +G K + F R W + + +V + KP+I GD++V+H++ID++ P+
Sbjct: 113 IDVQVPFSGEKLQRLDF--RELWAQTFRNYVTKLMQYKPVIIGGDMSVAHDKIDLAEPD- 169
Query: 206 FAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSG 265
++ GFT ERK F +L G ID +R+ H ++ +S+
Sbjct: 170 --------------DNHRHAGFTGIERKEFSELLNAG-FIDTFRYFHPDEAKYTYWSYRE 214
Query: 266 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
+ K G R+DYF+VS L+D++I ++ L GSDHCP+ L+L
Sbjct: 215 DARAKNIG--WRLDYFLVSNNLEDKMINAQI------LNNIMGSDHCPIELDL 259
>gi|227499267|ref|ZP_03929379.1| exodeoxyribonuclease III [Anaerococcus tetradius ATCC 35098]
gi|227218676|gb|EEI83907.1| exodeoxyribonuclease III [Anaerococcus tetradius ATCC 35098]
Length = 273
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 88/300 (29%), Positives = 138/300 (46%), Gaps = 50/300 (16%)
Query: 42 LKFVTWNANSLLLRVKNNWP------EFSNFITTFDPDVIALQILMRALSSPP------- 88
+KF++WN +SL + ++ + + I D D+IALQ + P
Sbjct: 1 MKFISWNIDSLNAALTSDSARAKLSRDVLDTIKNEDADIIALQETKLPATGPSKKHKEKL 60
Query: 89 ---FKNYQIWW----SLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEF 141
F +Y +W A YAGT L KK + K+ SF + +GR++ E
Sbjct: 61 FEFFPDYDYFWVSSRDSARKSYAGTMTLYKKGLKVKE-SFPEIGAPDTMDLEGRILTLEL 119
Query: 142 ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDV 200
+ +Y + Y PN G E N R WD + +++ + KP+I GD NV+HEEID+
Sbjct: 120 DDYYFVQVYTPNAG--GELNRLPLREIWDLKFADYLEELDKIKPVIATGDFNVAHEEIDL 177
Query: 201 SHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCG 260
+HPE N ++ GFT ER+ F +L G D++R+L+ KD++
Sbjct: 178 AHPE-------NNHM--------SAGFTDEERRGFTNLLNRG-FTDSFRYLN--KDLEGA 219
Query: 261 FSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
++W + K RIDYF+VS+ L D++ M G DH P+ LE+
Sbjct: 220 YTWWAQRVKTSKINNSGWRIDYFLVSDRLIDKVKDSTMIDSGQR------QDHTPIMLEI 273
>gi|256545331|ref|ZP_05472695.1| exodeoxyribonuclease III [Anaerococcus vaginalis ATCC 51170]
gi|256399012|gb|EEU12625.1| exodeoxyribonuclease III [Anaerococcus vaginalis ATCC 51170]
Length = 275
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 94/300 (31%), Positives = 134/300 (44%), Gaps = 50/300 (16%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFSN----FITTFDPDVIALQILMRALSSPPFKNYQI- 94
+KF++WN +SL L +N S I + D DVI LQ + P K+ +I
Sbjct: 1 MKFISWNIDSLNAALTSDSNRAVMSRDVLKTIISEDADVICLQETKLPRTGPSKKHQKIL 60
Query: 95 ----------WWSL---ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEF 141
W S A YAG L KK Q K ++F + + + R+I EF
Sbjct: 61 EEYFPSYDYAWVSSQEPARKSYAGCLTLYKKNLQTK-ITFPVLDAPDTMDQEARIITLEF 119
Query: 142 ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDV 200
E FYL Y PN G N R+ WD++ ++ K +I CGD NV+H+EID+
Sbjct: 120 EKFYLTQVYTPNAG--NGLNRLGLRQIWDEKFANYLENLDKNKAVIACGDFNVAHKEIDL 177
Query: 201 SHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCG 260
HPE N E GFT ER F +L +G +D +R++H D++
Sbjct: 178 KHPE------------NNHE---SAGFTDEERNGFTNLLNKG-FVDTFRYIH--GDVEGK 219
Query: 261 FSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
++W + K RIDYFIVS+ +KD+I M G DH P+ L +
Sbjct: 220 YTWWAQRVKTSKINNSGWRIDYFIVSDRIKDKIKESNMIDSGDR------QDHTPIYLSI 273
>gi|420263761|ref|ZP_14766397.1| exodeoxyribonuclease [Enterococcus sp. C1]
gi|394769203|gb|EJF49066.1| exodeoxyribonuclease [Enterococcus sp. C1]
Length = 250
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 84/282 (29%), Positives = 131/282 (46%), Gaps = 38/282 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+KF++WN N L VK N FS D D LQ L Y +W+ A
Sbjct: 1 MKFISWNVNGLRAIVKKN---FSEVFEALDADFFCLQETKLQEGQIELDLPGYHQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K+ + +E+ ++ +GRVI E+ F+L+ Y PN+ +
Sbjct: 58 EKKGYSGTAIFAKEPALSVRYGLGIEE----HDTEGRVITLEYPEFFLITCYTPNS--QN 111
Query: 159 EENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R W+ ++ + K +I CGDLNV+H+ ID+ +
Sbjct: 112 ELRRLDYRMTWEDAFLAYLTELKQQKSVILCGDLNVAHKNIDIKNW-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
K + GFT ER++F +L G D +R+ + D + +S WS +
Sbjct: 158 -KTNQKSAGFTPEEREKFSTLLAAG-FTDTFRYFY--PDAEGIYSWWSYRFNARKNNAGW 213
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF+VS+ L +R++ ++ I GSDHCPV L+L
Sbjct: 214 RIDYFVVSDNLNERLLDAKIHTDII------GSDHCPVELDL 249
>gi|451344782|ref|YP_007443413.1| exodeoxyribonuclease III [Bacillus amyloliquefaciens IT-45]
gi|449848540|gb|AGF25532.1| exodeoxyribonuclease III [Bacillus amyloliquefaciens IT-45]
Length = 252
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 85/282 (30%), Positives = 137/282 (48%), Gaps = 37/282 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L +K + + ++ D++ LQ + S + Y +W+ A
Sbjct: 1 MKLISWNVNGLRAVMKK--IDINTYVQETKADILCLQETKVQDGQVSLQLEGYHDYWNYA 58
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ K+ +P V + L ++ +GRVI EFE +++N Y PN K
Sbjct: 59 VKKGYSGTAVFSKE--KPLHVFYGLGID--DHDQEGRVITLEFENLFVVNCYTPNA--KR 112
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R +W+ +E++ + KP+I CGDLNV+H EID+ +P
Sbjct: 113 GLERIDYRLQWEADFKEYLQKLDRKKPVILCGDLNVAHREIDLKNP-------------- 158
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
K + GF+ ER+ F A+L G D++R+L+ D + G+S WS + +
Sbjct: 159 -KANRKNAGFSDQEREAFSALLNTG-FTDSFRYLY--PDREGGYSWWSYRTNAREKNIGW 214
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
R+DY IVS+ LK RI + GSDHCPV + +
Sbjct: 215 RLDYVIVSDRLKPRISEAAI------CADIMGSDHCPVEMTV 250
>gi|291523803|emb|CBK89390.1| exodeoxyribonuclease III [Eubacterium rectale DSM 17629]
Length = 251
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/282 (28%), Positives = 135/282 (47%), Gaps = 38/282 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+KF++WN N L V+ F +F + D D +Q L Y +W+ A
Sbjct: 1 MKFISWNVNGLRACVQKG---FLDFFNSIDVDFFCIQESKLQAGQIDLDLPGYHQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K +P VS+ + +++ +GRVI E++ FYL+ Y PN+ +
Sbjct: 58 EKKGYSGTAIFAKN--EPLSVSYGI--GIEEHDKEGRVITLEYDNFYLVTCYTPNS--QN 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R +W+ +E++ KP++ CGDLNV+H EID+ +P
Sbjct: 112 ELKRLPYRMQWEDDFREYLKALDAQKPVVLCGDLNVAHNEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
K + GF+ ER + +L G D +R+ + D + +S WS + +
Sbjct: 158 -KTNRKNAGFSDEERAKMTELLGSG-FTDTFRYFY--PDAEGIYSWWSYRFKAREKNAGW 213
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYFI S+ + D++ + + GSDHCPV +++
Sbjct: 214 RIDYFITSKRINDKLKKAAIHTDVL------GSDHCPVEVDI 249
>gi|429507371|ref|YP_007188555.1| ExoA protein [Bacillus amyloliquefaciens subsp. plantarum AS43.3]
gi|429488961|gb|AFZ92885.1| ExoA [Bacillus amyloliquefaciens subsp. plantarum AS43.3]
Length = 252
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 84/282 (29%), Positives = 137/282 (48%), Gaps = 37/282 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L +K + + ++ + D++ LQ + S + Y +W+ A
Sbjct: 1 MKLISWNVNGLRAVMKK--IDINTYVQETEADILCLQETKVQDGQVSLQLEGYHAYWNYA 58
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ K+ +P V + L ++ +GRVI EFE +++N Y PN K
Sbjct: 59 VKKGYSGTAVFSKE--KPLHVFYGLGID--DHDQEGRVITLEFEHVFVVNCYTPNA--KR 112
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R +W+ ++++ + KP+I CGDLNV+H EID+ +P
Sbjct: 113 GLERIDYRLQWEADFKDYLQKLDRKKPVILCGDLNVAHREIDLKNP-------------- 158
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
K + GF+ ER+ F A+L G D++R+L+ D + +S WS + +
Sbjct: 159 -KANRKNAGFSEQEREAFSALLNAG-FTDSFRYLY--PDQEGAYSWWSYRTNAREKNIGW 214
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
R+DY IVS+ LK RI + GSDHCPV + L
Sbjct: 215 RLDYVIVSDRLKQRISQAAI------CADIMGSDHCPVEMTL 250
>gi|290986733|ref|XP_002676078.1| predicted protein [Naegleria gruberi]
gi|284089678|gb|EFC43334.1| predicted protein [Naegleria gruberi]
Length = 340
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 85/288 (29%), Positives = 140/288 (48%), Gaps = 40/288 (13%)
Query: 42 LKFVTWNAN--SLLLRVKNNWPEFSNFITTFDPDVIALQ-------ILMRALSSPPFKNY 92
KF++WN N S + R + N+ + + +P + LQ + + ++ FKNY
Sbjct: 75 FKFISWNVNGISAVFRKEPNYLKM--LVEKEEPTCLCLQETKLSEDVKLSEMAQYKFKNY 132
Query: 93 --QIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 150
S A Y+GTA V K PK ++ K++ +GR I E+E FYL+NTY
Sbjct: 133 IGHFNTSRARKGYSGTACFVLK-HGPKVLNVKFGIGKDKHDLEGRTITVEYEDFYLVNTY 191
Query: 151 APNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAA 209
PN+G + + R ++WD + ++ + KP+IW GDLNV+ E+D+ P + +
Sbjct: 192 CPNSGQNLDRLEY-RTKEWDVDLLKYFEKLEKKKPIIWGGDLNVAISEMDIHDPLTLSKS 250
Query: 210 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEG-RLIDAYRFLHKEKDMDCGFSWSGNPI 268
PGFT+ ER+ + K ID++R+ + K + + +
Sbjct: 251 ---------------PGFTLEERQSSPLVTKASPPFIDSFRYKNPYKKQYTYYGYINDM- 294
Query: 269 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
+ + K RIDYF+ S LKD+I+ + LE ++GSDH P+ L
Sbjct: 295 -RLQKKGWRIDYFVCSNSLKDKIVNSYI------LEEYFGSDHLPIGL 335
>gi|420145437|ref|ZP_14652903.1| Exodeoxyribonuclease III [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
gi|398402932|gb|EJN56217.1| Exodeoxyribonuclease III [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
Length = 254
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 82/282 (29%), Positives = 142/282 (50%), Gaps = 43/282 (15%)
Query: 42 LKFVTWNANSLLLRVKNNWPEF-----SNFITTFDPDVIALQILMRALSSPPFKNYQIWW 96
+KF++WN N L VK N+ EF ++F + + A QI L+ P + Y W
Sbjct: 1 MKFISWNVNGLRAVVKKNFMEFFEQQDADFFCIQETKLQAGQI---ELTLPGYYQY---W 54
Query: 97 SLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNG 155
+ A+ K Y+GTA+ K +P V++ + +++ +GR+I E++ FYLL Y PN+
Sbjct: 55 NYAERKGYSGTAIFTKH--EPLNVTYGM--GVAEHDQEGRLITLEYKDFYLLTCYTPNSQ 110
Query: 156 WKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY 214
K + + R W+ + ++ + K P+I+CGDLNV+HE ID+ +
Sbjct: 111 TKLKRLDY--RMSWEDAFRSYISTLNQKKPVIFCGDLNVAHEPIDLKN------------ 156
Query: 215 VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGK 274
+K + GF+ ER +F +L G D++R+ + ++ +S+ N +
Sbjct: 157 ---DKTNHHNAGFSDEERAKFSQLLAAG-FTDSFRYFYPDQVTYSWWSYRFN--ARQNNA 210
Query: 275 RMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
RIDYF+ +++L+ ++ + L GSDHCPV L
Sbjct: 211 GWRIDYFVTADQLQPQLADAAI------LTDVLGSDHCPVML 246
>gi|261366200|ref|ZP_05979083.1| exodeoxyribonuclease III [Subdoligranulum variabile DSM 15176]
gi|282572018|gb|EFB77553.1| exodeoxyribonuclease III [Subdoligranulum variabile DSM 15176]
Length = 251
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 92/282 (32%), Positives = 130/282 (46%), Gaps = 38/282 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPF--KNYQIWWSLA 99
+KFV+WN N L +K F T D D +Q F + Y + A
Sbjct: 1 MKFVSWNVNGLRACLKKG---FEETFRTLDADFFCIQETKMQPGQADFAPEGYTEYIYSA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
D K Y+GTA+ + V + LE+ +E GR I E+ FYL+N Y PN+ +
Sbjct: 58 DKKGYSGTAIWART--PALSVRYGLEEDLHNHE--GRAITLEYPDFYLVNLYVPNS--QN 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R +W+ ++ ++ KP+I CGDLNV+H EID+ +P P
Sbjct: 112 ELARIDYRMQWEDDLRRYLQALDAQKPVILCGDLNVAHTEIDLKNP------------GP 159
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
N+ G GF+ ER + +L G D +R LH D +S WS + R
Sbjct: 160 NR---GAAGFSDQERGKLDELLAAG-FTDTFRHLH--PDATGIYSWWSMRFRARERNAGW 213
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF+VS L +I ++ L GSDHCPV+LEL
Sbjct: 214 RIDYFLVSNRLAPQIRKADI------LMDILGSDHCPVTLEL 249
>gi|42518122|ref|NP_964052.1| exodeoxyribonuclease [Lactobacillus johnsonii NCC 533]
gi|385824990|ref|YP_005861332.1| exodeoxyribonuclease III [Lactobacillus johnsonii DPC 6026]
gi|41582406|gb|AAS08018.1| exodeoxyribonuclease [Lactobacillus johnsonii NCC 533]
gi|329666434|gb|AEB92382.1| exodeoxyribonuclease III [Lactobacillus johnsonii DPC 6026]
Length = 275
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 86/302 (28%), Positives = 135/302 (44%), Gaps = 52/302 (17%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFS------NFITTFDPDVIALQILMRALSSPP------- 88
++ ++WN +SL + ++ P N I D D+IA+Q + P
Sbjct: 1 MRLISWNIDSLNAALTSDSPRAQLTRSVLNTIKEKDADIIAIQETKLRSTGPTKKHQEVL 60
Query: 89 ---FKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVSFSL-EKTALKYEPDGRVILAE 140
F NY W A YAGT L K P+ ++ + YE GR++ E
Sbjct: 61 AEMFPNYDYVWRSSEEPARKGYAGTMFLYKNTLTPEVTKPTIGAPDTMDYE--GRILTLE 118
Query: 141 FETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEID 199
F+ +Y+ Y PN+G E + R+ WD++ E++ + KP+I GD NV+H ID
Sbjct: 119 FDNYYVTQVYTPNSG--NELKRLEDRQIWDEKYTEYLQKLDKSKPVIASGDYNVAHTPID 176
Query: 200 VSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDC 259
+ HPE + GFT ER+ F +LK G D +R +H +++
Sbjct: 177 LKHPE---------------NNHHNAGFTDEERQGFDKLLKLG-FTDTFRKVH--GNVEG 218
Query: 260 GFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLE 317
+SW + K RIDY+IVS+ + D++ EM G DHCP+ LE
Sbjct: 219 VYSWWAQRVRTSKDNNSGWRIDYYIVSDRIADQVTKSEMIDTGDR------KDHCPIMLE 272
Query: 318 LS 319
++
Sbjct: 273 IN 274
>gi|338175515|ref|YP_004652325.1| exodeoxyribonuclease [Parachlamydia acanthamoebae UV-7]
gi|336479873|emb|CCB86471.1| exodeoxyribonuclease [Parachlamydia acanthamoebae UV-7]
Length = 251
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 88/283 (31%), Positives = 140/283 (49%), Gaps = 38/283 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPFK--NYQIWWSLA 99
+K ++WN N + +K F +FI +DPD++ LQ + + Y +W+ A
Sbjct: 1 MKIISWNVNGIRSILKKG---FLDFINKYDPDILCLQETKASQENVQLNLSQYHQYWNSA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GT + K+ +P V + ++ +GR I E+ TF+L+N Y PN+ K
Sbjct: 58 QKKGYSGTCVFTKE--KPLNVENGILLDL--HDKEGRTITLEYPTFFLVNVYVPNS--KR 111
Query: 159 EENSFQRR-RKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVP 216
+ + + R ++WD ++ KP+I+CGDLNV+H E D++ P+ A +N +
Sbjct: 112 DLSRLEYRCKQWDVDFLNYLKNIERKKPVIFCGDLNVAHTENDLAFPK----ANINNH-- 165
Query: 217 PNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM 276
GFT ER F I++ G +D +R EK WS + R
Sbjct: 166 ---------GFTAEERAGFDHIVESG-FVDIFREF--EKSSGHYTWWSQFNRCRERDIGW 213
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
RIDYF++S L+ RI + L+ GSDHCP++LELS
Sbjct: 214 RIDYFLISPSLRSRIKKASI------LKDVMGSDHCPITLELS 250
>gi|392987530|ref|YP_006486123.1| exodeoxyribonuclease [Enterococcus hirae ATCC 9790]
gi|392334950|gb|AFM69232.1| exodeoxyribonuclease [Enterococcus hirae ATCC 9790]
Length = 250
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 85/281 (30%), Positives = 132/281 (46%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+KF++WN N L V N F + D D LQ L Y +W+ A
Sbjct: 1 MKFISWNVNGLRAIVNKN---FLDVFHELDADFFCLQETKLQAGQIELDLPGYHQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K+ VS+ + ++ +GR+I E+ F+L+ Y PN+ +
Sbjct: 58 ERKGYSGTAIFAKE--PALNVSYGMGIDL--HDQEGRLITLEYPEFFLVTCYTPNS--QN 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R +W++ ++ + KP+I CGDLNV+H+EID+ +
Sbjct: 112 ELKRLDYRLQWEEAFYHYLEELKKQKPVIVCGDLNVAHQEIDLKNW-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GFT+ ER F +L G ID +R+ + E+ + WS + R
Sbjct: 158 -KTNQKNAGFTMEERTAFSHLLANG-FIDTFRYFYPEQTGIYSW-WSYRFNARKNNAGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ S+ELK R+I ++ GSDHCPV L+L
Sbjct: 215 IDYFLTSDELKPRLIDAKIH------TSIMGSDHCPVELDL 249
>gi|348027881|ref|YP_004870567.1| exodeoxyribonuclease III [Glaciecola nitratireducens FR1064]
gi|347945224|gb|AEP28574.1| Exodeoxyribonuclease III [Glaciecola nitratireducens FR1064]
Length = 254
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 85/288 (29%), Positives = 142/288 (49%), Gaps = 45/288 (15%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ-------ILMRALSSPPFKNYQI 94
+K V+WN N + +K +F + + D DV+ LQ ++ AL Y I
Sbjct: 1 MKLVSWNVNGVRAAIKK---DFLQSMASLDCDVLCLQETKAQDEQVIEALCE--LNGYHI 55
Query: 95 WWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPN 153
+ + A K Y+GT+++ + QP + + + +++ +GRV+ AEF YL+ Y PN
Sbjct: 56 FTNSAVKKGYSGTSIITR--IQP--IDVTKDMGIEEHDQEGRVLCAEFSDLYLVTVYTPN 111
Query: 154 NGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLN 212
+G + S+ R +WD ++ + KP++ CGDLN +H +ID++ P+
Sbjct: 112 SGNDLKRLSY--RAQWDADFLSYIKKLEEKKPVVICGDLNAAHRDIDLARPK-------- 161
Query: 213 GYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKY 271
PN G+T E ++ G +D +R++H EK +S WS +
Sbjct: 162 ----PNYNK--SAGYTQQEIDGIDNLVAAG-YVDTFRYVHPEK---VKYSWWSYRAGARE 211
Query: 272 RGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
R RIDYF+VS +L+ +I E+ +GSDHCPVS++LS
Sbjct: 212 RNVGWRIDYFLVSPKLQGQIHDAEIHN------DIHGSDHCPVSVQLS 253
>gi|416999368|ref|ZP_11939959.1| exodeoxyribonuclease III [Veillonella parvula ACS-068-V-Sch12]
gi|333976808|gb|EGL77670.1| exodeoxyribonuclease III [Veillonella parvula ACS-068-V-Sch12]
Length = 251
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 84/285 (29%), Positives = 134/285 (47%), Gaps = 48/285 (16%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFI---------TTFDPDVIALQILMRALSSPPFKNY 92
+K ++WN N L V + E N + T PD I+L++ P ++ Y
Sbjct: 1 MKLISWNVNGLRAAVTKGFMESFNELDADIFCLQETKLQPDQISLEL-------PGYEQY 53
Query: 93 QIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAP 152
W S Y+GTA+ + +P V+ + +++ +GRVI AE++ FYL+ Y P
Sbjct: 54 --WNSAVKKGYSGTAVFTR--IKPLSVTNGI--GIEEHDQEGRVITAEYDNFYLVCCYTP 107
Query: 153 NNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKL 211
N+ + E R W+ + ++L+ K P+I CGDLNV+H+EID+ +P
Sbjct: 108 NS--QRELARLDYRMNWEDAFRNYLLELDKKKPVILCGDLNVAHQEIDLKNP-------- 157
Query: 212 NGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKY 271
K + GF+ ER + +L G D +R L+ + + WS +
Sbjct: 158 -------KTNRKNAGFSDEERAKMTELLGAG-FTDTFRHLYPDAIEQYSW-WSYMGKARE 208
Query: 272 RGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
R RIDYFI S+ L D+I ++ + +GSDHCPV L
Sbjct: 209 RNTGWRIDYFITSKRLDDKIQEAKIH------QQIFGSDHCPVEL 247
>gi|269798609|ref|YP_003312509.1| exodeoxyribonuclease III Xth [Veillonella parvula DSM 2008]
gi|282849823|ref|ZP_06259207.1| exodeoxyribonuclease III [Veillonella parvula ATCC 17745]
gi|294792738|ref|ZP_06757885.1| exodeoxyribonuclease III [Veillonella sp. 6_1_27]
gi|269095238|gb|ACZ25229.1| exodeoxyribonuclease III Xth [Veillonella parvula DSM 2008]
gi|282580760|gb|EFB86159.1| exodeoxyribonuclease III [Veillonella parvula ATCC 17745]
gi|294456637|gb|EFG25000.1| exodeoxyribonuclease III [Veillonella sp. 6_1_27]
Length = 251
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 84/285 (29%), Positives = 134/285 (47%), Gaps = 48/285 (16%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFI---------TTFDPDVIALQILMRALSSPPFKNY 92
+K ++WN N L V + E N + T PD I+L++ P ++ Y
Sbjct: 1 MKLISWNVNGLRAAVTKGFMESFNELDADIFCLQETKLQPDQISLEL-------PGYEQY 53
Query: 93 QIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAP 152
W S Y+GTA+ + +P V+ + +++ +GRVI AE++ FYL+ Y P
Sbjct: 54 --WNSAVKKGYSGTAVFTR--IKPLSVTNGI--GIEEHDQEGRVITAEYDNFYLVCCYTP 107
Query: 153 NNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKL 211
N+ + E R W+ + ++L+ K P+I CGDLNV+H+EID+ +P
Sbjct: 108 NS--QRELARLDYRMTWEDAFRNYLLELDKKKPVILCGDLNVAHQEIDLKNP-------- 157
Query: 212 NGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKY 271
K + GF+ ER + +L G D +R L+ + + WS +
Sbjct: 158 -------KTNRKNAGFSDEERAKMTELLGAG-FTDTFRHLYPDAIEQYSW-WSYMGKARE 208
Query: 272 RGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
R RIDYFI S+ L D+I ++ + +GSDHCPV L
Sbjct: 209 RNTGWRIDYFITSKRLDDKIQEAKIH------QQIFGSDHCPVEL 247
>gi|227889124|ref|ZP_04006929.1| exodeoxyribonuclease III [Lactobacillus johnsonii ATCC 33200]
gi|227850353|gb|EEJ60439.1| exodeoxyribonuclease III [Lactobacillus johnsonii ATCC 33200]
Length = 275
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 86/302 (28%), Positives = 135/302 (44%), Gaps = 52/302 (17%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFS------NFITTFDPDVIALQILMRALSSPP------- 88
++ ++WN +SL + ++ P N I D D+IA+Q + P
Sbjct: 1 MRLISWNIDSLNAALTSDSPRAQLTRSVLNTIKEKDADIIAIQETKLRSTGPTKKHQEVL 60
Query: 89 ---FKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVSFSL-EKTALKYEPDGRVILAE 140
F NY W A YAGT L K P+ ++ + YE GR++ E
Sbjct: 61 AEIFPNYDYVWRSSEEPARKGYAGTMFLYKNTLTPEVTKPAIGAPDTMDYE--GRILTLE 118
Query: 141 FETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEID 199
F+ +Y+ Y PN+G E + R+ WD++ E++ + KP+I GD NV+H ID
Sbjct: 119 FDNYYVTQVYTPNSG--NELKRLKDRQIWDEKYTEYLQKLDKSKPVIASGDYNVAHTPID 176
Query: 200 VSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDC 259
+ HPE + GFT ER+ F +LK G D +R +H +++
Sbjct: 177 LKHPE---------------NNHHNAGFTDEERQGFDKLLKLG-FTDTFRKVH--GNVEG 218
Query: 260 GFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLE 317
+SW + K RIDY+IVS+ + D++ EM G DHCP+ LE
Sbjct: 219 VYSWWAQRVRTSKDNNSGWRIDYYIVSDRIADQVTKSEMIDTGDR------KDHCPIMLE 272
Query: 318 LS 319
++
Sbjct: 273 IN 274
>gi|406893678|gb|EKD38677.1| hypothetical protein ACD_75C00647G0002 [uncultured bacterium]
Length = 500
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 99/339 (29%), Positives = 153/339 (45%), Gaps = 61/339 (17%)
Query: 7 PIEKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNF 66
P+ EC K + P K G + +K+ +K ++WN N + K F++
Sbjct: 202 PLLPECPQK--GVRPRKIPGV-------KMTKEHVMKCISWNVNGIRAVAKKG---FADQ 249
Query: 67 ITTFDPDVIALQ-------ILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKK 118
+ TFD DV+ALQ L L + P Y +W A+ K Y+G A + P
Sbjct: 250 LRTFDADVVALQETKIQEDQLTDELKNIP--GYTSYWHCAERKGYSGVAFYTR--IPPVA 305
Query: 119 VSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVL 178
V + L +++ +GRV+ EF YL+N Y PN+ E+ + +++ R+ +
Sbjct: 306 VRYGLGDP--EFDCEGRVLTLEFADCYLINIYFPNSA--EKLVRLAHKLRFNDRLLGYAR 361
Query: 179 QC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGA 237
+ KP+I CGD NV+H+EID+ +P K + GFT ER +
Sbjct: 362 ELEQKKPVILCGDFNVAHKEIDLKNP---------------KTNVKNAGFTPEERAWMDS 406
Query: 238 ILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRI----IA 293
+ G +D +R ++ D +S+ N K G RIDYF VS DR+ I
Sbjct: 407 FVAAG-FVDTFRLFCEDPDQYTWWSYRFNARAKNVG--WRIDYFCVSGSAADRVRSATIL 463
Query: 294 CEMQGHGIELEGFYGSDHCPVSLELSEASSDSEKREKKN 332
CE+ GSDHCPV+LE SEK +++
Sbjct: 464 CEVM----------GSDHCPVALEFVSEGVKSEKSGERS 492
>gi|158298437|ref|XP_318609.4| AGAP009587-PA [Anopheles gambiae str. PEST]
gi|157013880|gb|EAA14571.4| AGAP009587-PA [Anopheles gambiae str. PEST]
Length = 606
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 87/286 (30%), Positives = 138/286 (48%), Gaps = 42/286 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPP-----FKNYQIWW 96
K +WN L V EF I PD++ +Q P K Y +W
Sbjct: 354 FKISSWNVAGLRSWVGKGGLEF---IEHEKPDILCVQETKCTEDQMPDEARHIKGYHPYW 410
Query: 97 SLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 156
+AG A+ KK P V++ L + + DGR++ AE+E FYL+ Y PN G
Sbjct: 411 LCKPGGHAGVAIYSKKM--PFHVAYGLGDE--EQDQDGRLLTAEYEKFYLVCVYVPNAGR 466
Query: 157 KEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 215
K + +R +W+++ +++ K P+I CGD+NV+HEEID+++P+
Sbjct: 467 KL--VTLPKRLRWNEKFHQYLRDLDAKKPVILCGDMNVAHEEIDLANPKT---------- 514
Query: 216 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 275
NK++ GFT ER+ +L G +D +R L+ ++ F W+ +G R K
Sbjct: 515 --NKKNA---GFTPEEREGMTELLSYG-FVDTFRKLYPDRTGAYTF-WTY--MGGARAKN 565
Query: 276 M--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
+ R+DYFI SE L ++ ++ +GSDHCPV+L L+
Sbjct: 566 VGWRLDYFITSERLAGKVTDNVIRSQ------VFGSDHCPVTLFLN 605
>gi|199436395|dbj|BAG70947.1| thermostable exonuclease III [Thermoplasma acidophilum]
Length = 250
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 90/282 (31%), Positives = 134/282 (47%), Gaps = 43/282 (15%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPFKNYQIWWSLADS- 101
KF++WN N L VKN + + D IALQ +S P + Y + + L ++
Sbjct: 4 KFLSWNVNGLRAAVKNG---AVSVLKQDDYFGIALQETKADSTSVPEEMYHLGYHLYNNP 60
Query: 102 ----KYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWK 157
Y+GT LV++ +P VS+ E +GR++ EF+ FY +N Y PN +
Sbjct: 61 AKKKGYSGTMSLVRE--KPIAVSYGFEN------EEGRILNLEFDKFYFINVYFPNA--Q 110
Query: 158 EEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVP 216
+ + ++ E+ + KPLI CGD NV+HEEID++ P
Sbjct: 111 HGLTRLDMKLDFGEKFLEYSNELRKKKPLIICGDFNVAHEEIDIARP------------- 157
Query: 217 PNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM 276
K++ GFT ER L G +D YR KE +S+ N K G
Sbjct: 158 --KDNENNAGFTKQERDWMTKFLDSG-YVDTYRIFMKEGGHYSWWSYRFNARAKNIG--W 212
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF+VS++++DR+ E+ LE GSDH PV+LE+
Sbjct: 213 RIDYFVVSDDIRDRVKKAEI------LETVTGSDHAPVTLEV 248
>gi|376316682|emb|CCG00067.1| exodeoxyribonuclease III [uncultured Flavobacteriia bacterium]
Length = 253
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 85/284 (29%), Positives = 138/284 (48%), Gaps = 39/284 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQIL-----MRALSSPPFKNYQIWW 96
+K V++N N + +K +F + DPDV+ +Q A + P Y I+
Sbjct: 1 MKIVSFNVNGIRAIMKK---DFHESLAMMDPDVLCIQETKAQDDQVAEALKPINGYHIFS 57
Query: 97 SLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNG 155
+ A K Y+GTA+L K+ K +S S + +++ +GRVI AEF ++++ Y PN+G
Sbjct: 58 NSAVKKGYSGTAILTKE----KPISVSYDINIEEHDTEGRVICAEFSAYFVVTVYVPNSG 113
Query: 156 WKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY 214
+ ++ R+ WDK ++ KP+I CGDLNV+H +ID+++P+
Sbjct: 114 SALKRLTY--RQTWDKAFLAYLKALEKKKPVIVCGDLNVAHRDIDLANPK---------- 161
Query: 215 VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGK 274
PN G+ E A L G +D +R H + D WS + R
Sbjct: 162 --PNYNK--SAGYMQEEIDGIDAYLSAG-FVDTFR--HFQPDTQKYSWWSYRAGARVRNV 214
Query: 275 RMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF++S +L ++ ++ + GSDHCPV+LEL
Sbjct: 215 GWRIDYFLISPDLLKKVKKADIYNEVM------GSDHCPVALEL 252
>gi|472869|emb|CAA54234.1| ARP protein [Arabidopsis thaliana]
Length = 527
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 94/295 (31%), Positives = 146/295 (49%), Gaps = 54/295 (18%)
Query: 42 LKFVTWNANSL--LLRVKN----NWPEFSNFITTFDPDVIALQ-ILMRALSSPPFKNYQI 94
+K +TWN N L LL+ ++ + NF D++ LQ ++ K I
Sbjct: 267 VKVMTWNVNGLRGLLKFESFSALQLAQRENF------DILCLQETKLQVKDVEEIKKTLI 320
Query: 95 ------WWSLADSK--YAGTALLVKKCFQPKKVSFSLEKTALK-YEPDGRVILAEFETFY 145
+WS + SK Y+GTA++ + +P V + T L ++ +GR++ AEF++FY
Sbjct: 321 DGYDHSFWSCSVSKLGYSGTAIISR--IKPLSVRYG---TGLSGHDTEGRIVTAEFDSFY 375
Query: 146 LLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPE 204
L+NTY PN+G + S+ R +WD+ + + + KP++ GDLN +HEEID+ +P
Sbjct: 376 LINTYVPNSGDGLKRLSY-RIEEWDRTLSNHIKELEKSKPVVLTGDLNCAHEEIDIFNP- 433
Query: 205 FFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-W 263
NK GFTI ER+ FGA L + +D +R K+ G++ W
Sbjct: 434 -----------AGNKR---SAGFTIEERQSFGANLLDKGFVDTFR---KQHPGVVGYTYW 476
Query: 264 SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
G+ K R+DYF+VS+ IA + I L GSDHCP+ L L
Sbjct: 477 GYRHGGRKTNKGWRLDYFLVSQS-----IAANVHDSYI-LPDINGSDHCPIGLIL 525
>gi|218283512|ref|ZP_03489502.1| hypothetical protein EUBIFOR_02092 [Eubacterium biforme DSM 3989]
gi|218215780|gb|EEC89318.1| hypothetical protein EUBIFOR_02092 [Eubacterium biforme DSM 3989]
Length = 249
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 83/288 (28%), Positives = 137/288 (47%), Gaps = 50/288 (17%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILM----RALSSPPFKNYQIWWS 97
+K ++WN N + +K F++ + D D + +Q + S YQ S
Sbjct: 1 MKLISWNVNGIRAVMKKG---FTDVLDELDADFVCIQETKAHPEQIESYTDNYPYQYINS 57
Query: 98 LADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWK 157
Y+GT +L KK +P + + + +++ +GR+I E+ FYL+ Y P +G
Sbjct: 58 AKRKGYSGTMVLCKK--KPLSIKYGI--NVPEFDDEGRIITLEYPEFYLVTVYTPTSG-- 111
Query: 158 EEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R +WD+ + L+ KP++ CGD NV++ EIDV +P+
Sbjct: 112 DGLMRLDYRLEWDEAFGNY-LKSLDKPVMACGDFNVANNEIDVPYPDMIR---------- 160
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR-- 275
G GF+ ER F L L+D YR L+ E +SW YRG+
Sbjct: 161 -----GTAGFSDEERDSFKENLL-SNLVDTYRVLNPET---IQYSW-----WSYRGQARE 206
Query: 276 ----MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
MR+DY++VS +LKD+I+ ++ L+ YGSDHCP+ L+++
Sbjct: 207 NNIGMRLDYWLVSNDLKDKIVDSKI------LDDIYGSDHCPIMLDIN 248
>gi|15227354|ref|NP_181677.1| apurinic endonuclease-redox protein [Arabidopsis thaliana]
gi|8488963|sp|P45951.2|ARP_ARATH RecName: Full=Apurinic endonuclease-redox protein; AltName:
Full=DNA-(apurinic or apyrimidinic site) lyase
gi|3241944|gb|AAC23731.1| DNA-(apurinic or apyrimidinic site) lyase (ARP) [Arabidopsis
thaliana]
gi|330254890|gb|AEC09984.1| apurinic endonuclease-redox protein [Arabidopsis thaliana]
Length = 536
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 94/295 (31%), Positives = 146/295 (49%), Gaps = 54/295 (18%)
Query: 42 LKFVTWNANSL--LLRVKN----NWPEFSNFITTFDPDVIALQ-ILMRALSSPPFKNYQI 94
+K +TWN N L LL+ ++ + NF D++ LQ ++ K I
Sbjct: 276 VKVMTWNVNGLRGLLKFESFSALQLAQRENF------DILCLQETKLQVKDVEEIKKTLI 329
Query: 95 ------WWSLADSK--YAGTALLVKKCFQPKKVSFSLEKTALK-YEPDGRVILAEFETFY 145
+WS + SK Y+GTA++ + +P V + T L ++ +GR++ AEF++FY
Sbjct: 330 DGYDHSFWSCSVSKLGYSGTAIISR--IKPLSVRYG---TGLSGHDTEGRIVTAEFDSFY 384
Query: 146 LLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPE 204
L+NTY PN+G + S+ R +WD+ + + + KP++ GDLN +HEEID+ +P
Sbjct: 385 LINTYVPNSGDGLKRLSY-RIEEWDRTLSNHIKELEKSKPVVLTGDLNCAHEEIDIFNP- 442
Query: 205 FFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-W 263
NK GFTI ER+ FGA L + +D +R K+ G++ W
Sbjct: 443 -----------AGNKR---SAGFTIEERQSFGANLLDKGFVDTFR---KQHPGVVGYTYW 485
Query: 264 SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
G+ K R+DYF+VS+ IA + I L GSDHCP+ L L
Sbjct: 486 GYRHGGRKTNKGWRLDYFLVSQS-----IAANVHDSYI-LPDINGSDHCPIGLIL 534
>gi|42519716|ref|NP_965646.1| exodeoxyribonuclease A [Lactobacillus johnsonii NCC 533]
gi|41584005|gb|AAS09612.1| exodeoxyribonuclease A [Lactobacillus johnsonii NCC 533]
Length = 261
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 82/283 (28%), Positives = 138/283 (48%), Gaps = 40/283 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPFK--NYQIWWSLA 99
+KF++WN N L +++ F N T D D+ +Q + Y +W+ A
Sbjct: 8 MKFMSWNVNGLRAALRHG---FVNTFTDLDADIFGIQDTRVEPNEVKIDLPGYYQYWNYA 64
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K YAGTA+ K+ K ++ + + + +GR I EF FY +N P +G K
Sbjct: 65 ERKGYAGTAVFTKE----KPITVANGFGVPEVDGEGRSITLEFSNFYFINVQVPFSGEKL 120
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ F R W + + +V + KP+I GD++V+HE ID++ P+
Sbjct: 121 QRLDF--RELWAQTFRNYVTKLMQYKPVIIGGDMSVAHERIDLAEPD------------- 165
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
++ +PGFT ERK F +L G ID +R+ H ++ +S+ + R + +
Sbjct: 166 --DNHHRPGFTGIERKEFSELLNAG-FIDTFRYFHPDEAKYTYWSYRDK---EARAENLG 219
Query: 277 -RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
R+DYF+VS L+DR+ ++ L GSDHCP+ L++
Sbjct: 220 WRLDYFLVSNNLEDRLTNAKI------LSNIMGSDHCPIELDV 256
>gi|148544535|ref|YP_001271905.1| exodeoxyribonuclease III Xth [Lactobacillus reuteri DSM 20016]
gi|184153898|ref|YP_001842239.1| exodeoxyribonuclease III [Lactobacillus reuteri JCM 1112]
gi|227363037|ref|ZP_03847174.1| exodeoxyribonuclease III Xth [Lactobacillus reuteri MM2-3]
gi|325682856|ref|ZP_08162372.1| exodeoxyribonuclease III [Lactobacillus reuteri MM4-1A]
gi|148531569|gb|ABQ83568.1| exodeoxyribonuclease III Xth [Lactobacillus reuteri DSM 20016]
gi|183225242|dbj|BAG25759.1| exodeoxyribonuclease III [Lactobacillus reuteri JCM 1112]
gi|227071921|gb|EEI10207.1| exodeoxyribonuclease III Xth [Lactobacillus reuteri MM2-3]
gi|324977206|gb|EGC14157.1| exodeoxyribonuclease III [Lactobacillus reuteri MM4-1A]
Length = 253
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 82/283 (28%), Positives = 140/283 (49%), Gaps = 44/283 (15%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTF---DPDVIALQILMRALSSPPFK--NYQIWW 96
+KF++W+ N L + + F+ F D D LQ P + NY +W
Sbjct: 1 MKFISWSVNGLKSAINHG------FVEDFKRQDADFFCLQRTRLDKGEEPIQIPNYYQYW 54
Query: 97 SLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNG 155
+ A+ K Y+GTA+ K ++P+ V + + + ++ +GR+I E+ FYL++ Y P +G
Sbjct: 55 NYAEKKGYSGTAIFTK--YKPENVIYGMNNSI--FDKEGRLITLEYPNFYLIDVYVPVSG 110
Query: 156 WKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY 214
E+ R WD+ ++V+ S KP+I GD++++++ ID++ P
Sbjct: 111 --EKLQHLDYRLDWDRAFLDYVINLQSSKPVIIGGDMSIAYQPIDLAEP----------- 157
Query: 215 VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRG 273
E+ + GFT ER FG +L G L D +R+LH ++ ++ WS + R
Sbjct: 158 ----TENHHKAGFTKQERADFGKLLNAG-LTDTFRYLH--PNLHGAYTWWSYRYDARERN 210
Query: 274 KRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
R+DYF+VS+ K+RI ++ L GS HCP+ L
Sbjct: 211 VGWRLDYFLVSDVWKERIEEAKI------LSDVKGSSHCPIEL 247
>gi|294794491|ref|ZP_06759627.1| exodeoxyribonuclease III [Veillonella sp. 3_1_44]
gi|294454821|gb|EFG23194.1| exodeoxyribonuclease III [Veillonella sp. 3_1_44]
Length = 251
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 84/285 (29%), Positives = 137/285 (48%), Gaps = 48/285 (16%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFI---------TTFDPDVIALQILMRALSSPPFKNY 92
+K ++WN N L V + E N + T PD I+L++ P ++ Y
Sbjct: 1 MKLISWNVNGLRAAVTKGFMESFNELDADIFCLQETKLQPDQISLEL-------PGYEQY 53
Query: 93 QIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAP 152
W S Y+GTA+ + +P V+ + +++ +GRVI AE++ FYL+ Y P
Sbjct: 54 --WNSAVKKGYSGTAVFTR--IKPLSVTNGI--GIEEHDQEGRVITAEYDNFYLVCCYTP 107
Query: 153 NNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKL 211
N+ + E R W+ + ++L+ K P+I CGDLNV+H+EID+ +P+
Sbjct: 108 NS--QRELARLDYRMTWEDAFRNYLLELDKKKPVILCGDLNVAHQEIDLKNPKM------ 159
Query: 212 NGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKY 271
N+++ GF+ ER + +L G D +R L+ + + WS +
Sbjct: 160 ------NRKN---AGFSDEERAKMTELLGAG-FTDTFRHLYPDAIEQYSW-WSYMGKARE 208
Query: 272 RGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
R RIDYFI S+ L D+I ++ + +GSDHCPV L
Sbjct: 209 RNTGWRIDYFITSKRLDDKIQEAKIH------QQIFGSDHCPVEL 247
>gi|346314587|ref|ZP_08856106.1| exodeoxyribonuclease III [Erysipelotrichaceae bacterium 2_2_44A]
gi|373124043|ref|ZP_09537885.1| exodeoxyribonuclease III (xth) [Erysipelotrichaceae bacterium 21_3]
gi|422327142|ref|ZP_16408169.1| exodeoxyribonuclease III (xth) [Erysipelotrichaceae bacterium
6_1_45]
gi|345906322|gb|EGX76051.1| exodeoxyribonuclease III [Erysipelotrichaceae bacterium 2_2_44A]
gi|371659875|gb|EHO25135.1| exodeoxyribonuclease III (xth) [Erysipelotrichaceae bacterium 21_3]
gi|371663836|gb|EHO29020.1| exodeoxyribonuclease III (xth) [Erysipelotrichaceae bacterium
6_1_45]
Length = 254
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 84/287 (29%), Positives = 140/287 (48%), Gaps = 40/287 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQIL-----MRALSSPPFKNYQIWW 96
++ V+WN N + ++ F +F D DV +Q + +P + YQ
Sbjct: 1 MRLVSWNVNGIRACMQKG---FMDFFKEIDADVFCIQETKMQPGQLEIETPGY--YQYMN 55
Query: 97 SLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 156
S Y+GT + K+ +P V++ L +++ +GRVI E+E FYL+ Y PN+
Sbjct: 56 SAEKKGYSGTMVFSKQ--KPLSVTYGL--GIEEHDHEGRVITCEYEDFYLVCVYTPNS-- 109
Query: 157 KEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 215
K+ R W+ + ++ + + K ++ CGDLNV+H+EID+ +P
Sbjct: 110 KDGLLRLDYRMVWEDAFRAYLHKLNETKSVLVCGDLNVAHKEIDLKNP------------ 157
Query: 216 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 275
K + GFT ER + +L+ G ID++R+L+ E++ + WS + +
Sbjct: 158 ---KTNRRNAGFTDEERGKMSVLLESG-FIDSFRYLYPEQEGIYSW-WSYRFKAREKNAG 212
Query: 276 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEAS 322
RIDYF+VSE+ K+ I + YGSDHCPVSLE + +
Sbjct: 213 WRIDYFLVSEDAKEAIREARIH------TDIYGSDHCPVSLEFDKKA 253
>gi|350565008|ref|ZP_08933806.1| exodeoxyribonuclease III [Peptoniphilus indolicus ATCC 29427]
gi|348664197|gb|EGY80712.1| exodeoxyribonuclease III [Peptoniphilus indolicus ATCC 29427]
Length = 250
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 84/281 (29%), Positives = 141/281 (50%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+KF++WN N L VK + E + +PD+I LQ L + Y+++++ A
Sbjct: 1 MKFISWNVNGLRAAVKKGFLEK---LAEMNPDIIGLQEIKLSEGQLELELEGYELYYNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K +P V++ + +++ +GRVI EFE +Y + Y PN+ K
Sbjct: 58 ERKGYSGTAVFTK--LKPISVTYGI--GIEEHDTEGRVITLEFEDYYFITCYTPNSKRKL 113
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E + R W+ + ++ + KP++ CGDLNV+H EID+++P+
Sbjct: 114 ERLDY--RVVWEDAFRNYLNELDKNKPIVLCGDLNVAHNEIDLANPD------------- 158
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
+ GF+ ER +F +L G +D +R + ++ + + WS + R R
Sbjct: 159 --TNHKSAGFSDEERAKFTELLASG-YVDTFRHFYPDRADEYSW-WSNFNKARERNIGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+VSE DRI ++ + GSDHCPV + L
Sbjct: 215 IDYFVVSERFLDRIEDSKIH------QSVMGSDHCPVEIIL 249
>gi|282852873|ref|ZP_06262214.1| exodeoxyribonuclease III [Lactobacillus gasseri 224-1]
gi|282555981|gb|EFB61602.1| exodeoxyribonuclease III [Lactobacillus gasseri 224-1]
Length = 254
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 82/283 (28%), Positives = 136/283 (48%), Gaps = 41/283 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMR-----ALSSPPFKNYQIWW 96
+KF++WN N L +++ F N T D D+ A+Q + P + YQ W
Sbjct: 1 MKFMSWNVNGLRAALRHG---FVNTFTDLDADIFAIQDTRVEPNEVQIDLPGY--YQYWN 55
Query: 97 SLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 156
YAGTA+ K+ K ++ + + + +GR I EF FY ++ P +G
Sbjct: 56 YAKRKGYAGTAVFTKE----KPITVANGFGVPEVDGEGRSITLEFSNFYFIDVQVPFSGE 111
Query: 157 KEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 215
K + F R W + + +V + KP+I GD++V+H++ID++ P+
Sbjct: 112 KLQRLDF--RELWAQTFRNYVTKLMQYKPVIIGGDMSVAHDKIDLAEPD----------- 158
Query: 216 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 275
++ GFT ERK F +L G ID +R+ H ++ +S+ + K G
Sbjct: 159 ----DNHRHAGFTGIERKEFSELLNAG-FIDTFRYFHPDEAKYTYWSYREDARAKNIG-- 211
Query: 276 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
R+DYF+VS L+D++I ++ L GSDHCP+ L+L
Sbjct: 212 WRLDYFLVSNNLEDKMINAQI------LNNIMGSDHCPIELDL 248
>gi|348027153|ref|YP_004766958.1| exodeoxyribonuclease III [Megasphaera elsdenii DSM 20460]
gi|341823207|emb|CCC74131.1| exodeoxyribonuclease III [Megasphaera elsdenii DSM 20460]
Length = 254
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 84/281 (29%), Positives = 131/281 (46%), Gaps = 38/281 (13%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLAD 100
KF++WN N L +K F + D DV LQ L Y+ +W+ AD
Sbjct: 6 KFISWNVNGLRAVMKKG---FLDIFQALDADVFCLQETKLQAGQIDLDLPGYEQYWNYAD 62
Query: 101 SK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEE 159
K Y+GTA+ + P V + + +++ +GR+I EF +Y + Y PN+ + E
Sbjct: 63 RKGYSGTAIFTR--LAPLSVRYGMGID--EHDHEGRLITLEFPDYYFVTCYTPNS--QSE 116
Query: 160 ENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPN 218
R KW+ ++++L KP+I CGDLNV+HEEID+ +P
Sbjct: 117 LARLPYRMKWEDDFRQYLLDLHQEKPVIVCGDLNVAHEEIDLKNP--------------- 161
Query: 219 KEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMR 277
K + GF+ ER++ +L G D +R+ + D+ +S WS + R
Sbjct: 162 KTNRKNAGFSDEERQKMTDLLAAG-FTDTWRYFY--PDVTGVYSWWSYRFKARQNNAGWR 218
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+ +++L R+ + GSDHCPV LEL
Sbjct: 219 IDYFLTTKDLDSRLAKASI------YTDITGSDHCPVGLEL 253
>gi|374338532|ref|YP_005095247.1| Exodeoxyribonuclease III [Streptococcus macedonicus ACA-DC 198]
gi|372284647|emb|CCF02936.1| Exodeoxyribonuclease III [Streptococcus macedonicus ACA-DC 198]
Length = 276
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 83/300 (27%), Positives = 134/300 (44%), Gaps = 49/300 (16%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQILMRALSSPPFKNYQI- 94
+K ++WN +SL + +N + + T + D+IA+Q + P K+ QI
Sbjct: 1 MKLISWNIDSLNAALTSNSARAIMSRAVIDTLVTENADIIAIQETKLSAKGPTKKHLQIL 60
Query: 95 ----------WWSL---ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEF 141
W S A YAGT L K P+ +S+ + +GR+I EF
Sbjct: 61 QDYFPEYEVSWRSSVEPARKGYAGTMFLYKSSLTPRSISYPEIGAPDNMDSEGRIITLEF 120
Query: 142 ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDV 200
+ F++ Y PN G + R+ WD++ +++ + KP++ GD NV+H+EID+
Sbjct: 121 DKFFVTQVYTPNAG--DGLKRLAERQIWDEKYADYLAELDQVKPVLATGDYNVAHKEIDL 178
Query: 201 SHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCG 260
+HP N+ PGFT ER F +L +G D +R++H D+
Sbjct: 179 AHPS------------SNRR---SPGFTDEERAGFTNLLAKG-FTDTFRYIH--GDVPGV 220
Query: 261 FSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
+SW + K RIDY++ S + D+I EM G DH P+ LE+
Sbjct: 221 YSWWAQRSKTSKINNSGWRIDYWLTSSRIADKITKSEMIDSGAR------QDHTPIVLEI 274
>gi|213512198|ref|NP_001135227.1| DNA-(apurinic or apyrimidinic site) lyase [Salmo salar]
gi|197631957|gb|ACH70702.1| APEX nuclease 1 [Salmo salar]
gi|209154634|gb|ACI33549.1| DNA-apurinic or apyrimidinic site lyase [Salmo salar]
gi|209154684|gb|ACI33574.1| DNA-apurinic or apyrimidinic site lyase [Salmo salar]
Length = 312
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 85/286 (29%), Positives = 141/286 (49%), Gaps = 41/286 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPFKNYQI------W 95
+K +WN + L VK + +++ PDV+ LQ A S P + + +
Sbjct: 57 MKITSWNVDGLRAWVKK---KGLDWVRDEAPDVLCLQETKCAEKSLPDEITSMPEFPHKY 113
Query: 96 WSLADSK--YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPN 153
W+ +D K Y+G A+L K +P KV++ + K +++ +GRVI AEF TF+L+ Y PN
Sbjct: 114 WAGSDEKEGYSGVAMLCKT--EPLKVTYGIGKE--EHDKEGRVITAEFPTFFLVTAYVPN 169
Query: 154 NGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLN 212
+G R+ WD + ++ KPL+ CGDLNV+HEEID+ +
Sbjct: 170 SG--RGLVRLDYRKTWDVEFKAYLSDLDKRKPLVLCGDLNVAHEEIDLKN---------- 217
Query: 213 GYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYR 272
+K + GFT ER+ F +L G D++R L+ E+ F W+ + +
Sbjct: 218 -----SKGNKKNAGFTAEEREGFNQLLAAG-FTDSFRELYPEQANAYTF-WTYMMNSRSK 270
Query: 273 GKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
R+DYF++S L + +++ + GSDHCP++L +
Sbjct: 271 NVGWRLDYFVLSSALLPGLCDSKIRNQAM------GSDHCPITLHM 310
>gi|313885686|ref|ZP_07819435.1| exodeoxyribonuclease III [Eremococcus coleocola ACS-139-V-Col8]
gi|312619051|gb|EFR30491.1| exodeoxyribonuclease III [Eremococcus coleocola ACS-139-V-Col8]
Length = 275
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 89/303 (29%), Positives = 133/303 (43%), Gaps = 56/303 (18%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFS----NFITTFDPDVIALQILMRALSSPP------- 88
+K ++WN +SL L +N S I +PD+IA+Q + P
Sbjct: 1 MKLISWNIDSLNAALTSDSNRALLSRDVLQTILNLNPDIIAIQETKLSAKGPTQKHLEIL 60
Query: 89 ---FKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEF 141
FK+Y + W A YAGT L K +PK V+F + + +GR+I EF
Sbjct: 61 ADLFKDYMVVWRSSEEPARKGYAGTMFLYKHDLEPK-VTFPEIEAPSPMDAEGRMITLEF 119
Query: 142 ETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEE 197
+ FY+ Y PN G N+ +R R+ WD++ ++ K ++ GD NV+H E
Sbjct: 120 DDFYVTQVYTPNAG-----NALKRLADRQIWDQQYAAYLASLDQDKIVLATGDFNVAHHE 174
Query: 198 IDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDM 257
ID++HPE + GFT ER F +L G D +R LH D+
Sbjct: 175 IDLAHPE---------------NNHHSAGFTDEERAGFTQLLAHG-FTDTFRHLH--GDV 216
Query: 258 DCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVS 315
++W + K RIDY++VS DR+I E+ G DH P+
Sbjct: 217 TGAYTWWAQRVKTSKINNSGWRIDYWLVSNRAVDRVIQSEIIDSGTR------QDHTPIL 270
Query: 316 LEL 318
LE+
Sbjct: 271 LEI 273
>gi|325846697|ref|ZP_08169612.1| exodeoxyribonuclease III [Anaerococcus hydrogenalis ACS-025-V-Sch4]
gi|325481455|gb|EGC84496.1| exodeoxyribonuclease III [Anaerococcus hydrogenalis ACS-025-V-Sch4]
Length = 275
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 89/300 (29%), Positives = 135/300 (45%), Gaps = 50/300 (16%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFS----NFITTFDPDVIALQILMRALSSPPFKNYQI- 94
+K ++WN +SL L +N + S + I D D+I LQ + P K+ QI
Sbjct: 1 MKIISWNIDSLNAALTSDSNRAKMSRDVLDTIIKEDADIICLQETKLPRTGPSKKHKQIL 60
Query: 95 ----------WWSL---ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEF 141
W S A YAG KK F+P +S+ + + R+I EF
Sbjct: 61 ESYFPQYNYAWISSQEPARKSYAGCLTFYKKEFEPI-ISYPTLDAPDTMDQEARIITLEF 119
Query: 142 ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDV 200
+ FYL Y PN G + R+ WDK+ ++ + KP+I CGD NV+H+EID+
Sbjct: 120 DNFYLTQVYTPNAG--SGLSRLDLRQVWDKKYANYLEKLDQNKPVIACGDFNVAHKEIDL 177
Query: 201 SHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCG 260
HPE + GFT ER F +L +G +D +R+LH D++
Sbjct: 178 KHPE---------------NNHKSAGFTDEERSGFTNLLNKG-FVDTFRYLH--GDVEGK 219
Query: 261 FSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
++W + K RIDYFIVS+ +K++I +M G DH P+ + +
Sbjct: 220 YTWWAQRVKTSKINNSGWRIDYFIVSDRIKEKIKESDMIDSGDR------QDHTPIYINI 273
>gi|301066021|ref|YP_003788044.1| exonuclease III [Lactobacillus casei str. Zhang]
gi|417980207|ref|ZP_12620888.1| exodeoxyribonuclease III [Lactobacillus casei 12A]
gi|300438428|gb|ADK18194.1| Exonuclease III [Lactobacillus casei str. Zhang]
gi|410525434|gb|EKQ00336.1| exodeoxyribonuclease III [Lactobacillus casei 12A]
Length = 252
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 89/283 (31%), Positives = 133/283 (46%), Gaps = 45/283 (15%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ-ILMRA----LSSPPFKNYQIWW 96
+K ++WN N L +K EF D D LQ M+A L P + Y +
Sbjct: 1 MKLISWNVNGLRAVLKK---EFMTIFNELDADWFCLQETKMQAGQVELDLPGYHQY---F 54
Query: 97 SLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNG 155
+ A+ K Y+GTA+ K +P V++ + +++ +GR+I E+ FYL+ Y PN+G
Sbjct: 55 NYAERKGYSGTAIFTKH--EPLNVTYGM--GVPEHDTEGRIITLEYPNFYLMTVYTPNSG 110
Query: 156 WKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY 214
E R++WDK + Q + K PL++CGDLNV+H+EID+ +
Sbjct: 111 --GELKRLDYRQQWDKDFLAYTNQLAAKKPLVYCGDLNVAHQEIDLKN------------ 156
Query: 215 VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRG 273
+K + GFT ER F L G ID +R L+ + +S WS +
Sbjct: 157 ---DKTNHHNAGFTDEERADFTKQLDSG-FIDTFRNLYPDT---VTYSWWSYRFHARANN 209
Query: 274 KRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
RIDYF+ S + K I ++ L GSDHCPV L
Sbjct: 210 AGWRIDYFVSSRDFKPYIQDAKI------LTDIMGSDHCPVEL 246
>gi|432942682|ref|XP_004083031.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like isoform 2
[Oryzias latipes]
Length = 298
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 84/281 (29%), Positives = 141/281 (50%), Gaps = 42/281 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPFKNYQIWWSLADS 101
+K +WN + L VK D A + L ++S P ++ +W+++D
Sbjct: 56 MKITSWNVDGLRAWVKKG---------GLDETKCAEKDLPAEITSMPEYPHK-YWAVSDD 105
Query: 102 K--YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEE 159
K Y+G A+L K +P KV++ + K +++ +GRVI AEF TF+L+ Y PN
Sbjct: 106 KEGYSGVAMLSKT--EPLKVTYGIGKE--EHDKEGRVITAEFPTFFLVTAYVPNA--SRG 159
Query: 160 ENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPN 218
R+ WD Q ++ + KPL+ CGDLNV+H+EID+ +P+ N
Sbjct: 160 LVRLDYRKTWDVDFQAYLTELDVQKPLVLCGDLNVAHQEIDLKNPK------------GN 207
Query: 219 KEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRI 278
K++ GFT ER+ F +L G +D++R L+ E+ F W+ + + R+
Sbjct: 208 KKN---AGFTPEEREGFSQLLAAG-FVDSFRELYPEQANAYTF-WTYMMNSRAKNVGWRL 262
Query: 279 DYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
DYF++S L + +++ + GSDHCP++L L+
Sbjct: 263 DYFLLSSSLVPGLCDSKIRNKAM------GSDHCPITLHLA 297
>gi|145529087|ref|XP_001450332.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124417943|emb|CAK82935.1| unnamed protein product [Paramecium tetraurelia]
Length = 348
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 88/288 (30%), Positives = 140/288 (48%), Gaps = 42/288 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILM--------RALSSPPFKNYQ 93
+K +WN N + R ++ D+I L L L + K+Y
Sbjct: 87 VKISSWNINGI--RAVTKHESAVQYLNDSKFDIICLNELKADQDVFDKENLGAKFGKHYF 144
Query: 94 IWWSLADSK--YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYA 151
++ + SK Y+G A+ K K +S + K++ +GR + AEFE FYL++ Y
Sbjct: 145 LYLNFCKSKAGYSGVAIASK----VKPLSVKCDIGVDKHDQEGRTLTAEFEQFYLVSCYV 200
Query: 152 PNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAK 210
PN+G K E + R ++WD Q ++ KP I CGDLNV+H EID+S+P
Sbjct: 201 PNSGQKLERLDY-RTKEWDIDFQNYLEGLRKKKPTILCGDLNVAHHEIDLSNP------- 252
Query: 211 LNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGK 270
NK+ GFT+ ER +F L++G +D++R LH ++ FS N +
Sbjct: 253 -----AGNKK---TAGFTLQERDQFSNYLQKG-WVDSFRHLHPKEVKYSFFSARSNSRSQ 303
Query: 271 YRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
+G R+DYFI+++E D I ++ + +E GSDH P+ E+
Sbjct: 304 NKG--WRLDYFIINKEASDAITVSDIN---LTVE---GSDHVPIECEV 343
>gi|293400493|ref|ZP_06644638.1| exodeoxyribonuclease III [Erysipelotrichaceae bacterium 5_2_54FAA]
gi|291305519|gb|EFE46763.1| exodeoxyribonuclease III [Erysipelotrichaceae bacterium 5_2_54FAA]
Length = 253
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 86/283 (30%), Positives = 140/283 (49%), Gaps = 40/283 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRA-----LSSPPFKNYQIWW 96
+K V+WN N + + F +F D D+ +Q +++P + YQ
Sbjct: 3 MKMVSWNVNGIRACMTKG---FMDFFQEIDADIFCIQETKMQPGQLDIATPGY--YQYIN 57
Query: 97 SLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 156
S Y+GT + K+ +P V++ L +++ +GRVI E+E FYL+ Y PN+
Sbjct: 58 SADKKGYSGTMVFTKE--KPIAVTYDLGID--EHDHEGRVITCEYENFYLVCVYTPNS-- 111
Query: 157 KEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 215
K+ R +W+ + ++ K +I CGDLNV+H+EID+ +P
Sbjct: 112 KDGLLRLDYRMQWEDDFRAYLNALKEKKSVIVCGDLNVAHKEIDLKNP------------ 159
Query: 216 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 275
K + GFT ER + + + G ID++R+L+ E++ + WS + +
Sbjct: 160 ---KTNRRNAGFTDEERAKMTTLQQSG-FIDSFRYLYPEQEGIYSW-WSYRFKAREKNAG 214
Query: 276 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF+VSE+ KD+I Q I + F GSDHCPVSL++
Sbjct: 215 WRIDYFLVSEDAKDKI-----QEASIHTDVF-GSDHCPVSLDI 251
>gi|29377212|ref|NP_816366.1| exodeoxyribonuclease [Enterococcus faecalis V583]
gi|227554220|ref|ZP_03984267.1| exodeoxyribonuclease [Enterococcus faecalis HH22]
gi|422714823|ref|ZP_16771549.1| exodeoxyribonuclease III [Enterococcus faecalis TX0309A]
gi|422717962|ref|ZP_16774635.1| exodeoxyribonuclease III [Enterococcus faecalis TX0309B]
gi|29344678|gb|AAO82436.1| exodeoxyribonuclease [Enterococcus faecalis V583]
gi|227176667|gb|EEI57639.1| exodeoxyribonuclease [Enterococcus faecalis HH22]
gi|315573773|gb|EFU85964.1| exodeoxyribonuclease III [Enterococcus faecalis TX0309B]
gi|315580287|gb|EFU92478.1| exodeoxyribonuclease III [Enterococcus faecalis TX0309A]
Length = 251
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 83/281 (29%), Positives = 133/281 (47%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L VK N F + D D LQ L Y +WS A
Sbjct: 1 MKCISWNVNGLRAVVKKN---FMDVFNELDADFFCLQETKLQAGQIDLELPGYHQYWSYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K+ + V + L A ++ +GRVI E+ F+++ Y PN+ +
Sbjct: 58 EKKGYSGTAIFAKE--EALSVRYGLGIEA--HDQEGRVITLEYPEFFMVTCYTPNS--QA 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R W+ + ++ + + KP+I CGDLNV+H+ ID+ +
Sbjct: 112 ELKRLAYRMTWEDAFRAYLNELNQEKPVILCGDLNVAHQNIDLKNW-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GFT ER++F +L G D +R+ + E + + WS + R
Sbjct: 158 -KTNQKNAGFTPEERQKFTELLDSG-FTDTFRYFYPEAEGIYSW-WSYRFNARKNNAGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+VSE L +R+++ ++ + GSDHCPV + L
Sbjct: 215 IDYFVVSESLNERLVSAKIHTDIL------GSDHCPVEVVL 249
>gi|123487248|ref|XP_001324898.1| exodeoxyribonuclease III family protein [Trichomonas vaginalis G3]
gi|121907789|gb|EAY12675.1| exodeoxyribonuclease III family protein [Trichomonas vaginalis G3]
Length = 289
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 94/286 (32%), Positives = 136/286 (47%), Gaps = 48/286 (16%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ-ILMRALSSPPFKNYQI------ 94
+K TWN SL R K+N F+ +I + PD+I +Q KN+++
Sbjct: 9 IKIATWNVASLRARWKDN---FTFYINSSKPDIICIQETKFHVDMKESLKNFKLDGYKGY 65
Query: 95 WWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNN 154
++ + YAGT + K ++P V S +PDGR I EF+ FYL+NTY N
Sbjct: 66 FFHAKKAGYAGTCIYTK--YKPVSVKRSFA------DPDGRCITMEFKNFYLINTYVVNA 117
Query: 155 GWKEEENSFQRR-RKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLN 212
G E+ + ++W+ +I+ +++ KP+IW GDLNV+H+ ID+ E K+
Sbjct: 118 G--EDLGRLDYKIKEWNPKIRNHIMELEKKKPVIWTGDLNVAHKPIDIWQAE--GHEKIA 173
Query: 213 GYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYR 272
GY T ERK F L EG ID YR LH E F++ G K +
Sbjct: 174 GY-------------TDEERKWFDDFLNEGH-IDIYRELHPESHEFTFFNYRGQAKSKNQ 219
Query: 273 GKRMRIDYFIVSEELKDR--IIACEMQGHGIELEGFYGSDHCPVSL 316
G RIDYFI + ++ I C ++G GSDH PV L
Sbjct: 220 G--WRIDYFITGKGNIEKLGISDCVIEG------TIDGSDHQPVIL 257
>gi|430362273|ref|ZP_19427003.1| exonuclease III [Enterococcus faecalis OG1X]
gi|430366851|ref|ZP_19427621.1| exonuclease III [Enterococcus faecalis M7]
gi|429512184|gb|ELA01799.1| exonuclease III [Enterococcus faecalis OG1X]
gi|429516857|gb|ELA06332.1| exonuclease III [Enterococcus faecalis M7]
Length = 271
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 87/296 (29%), Positives = 140/296 (47%), Gaps = 38/296 (12%)
Query: 29 TETSSEENSKK--DPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRAL 84
TETS + K +K ++WN N L VK N F + D D LQ L
Sbjct: 6 TETSKSVSYLKGVSTMKCISWNVNGLRAVVKKN---FMDVFNELDADFFCLQETKLQAGQ 62
Query: 85 SSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFET 143
Y +W+ A+ K Y+GTA+ K+ + V + L A ++ +GRVI E+
Sbjct: 63 IDLELPGYHQYWNYAEKKGYSGTAIFAKE--EALSVRYGLGIEA--HDQEGRVITLEYPE 118
Query: 144 FYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSH 202
F+++ Y PN+ + E R W+ + ++ + + KP+I CGDLNV+H++ID+ +
Sbjct: 119 FFMVTCYTPNS--QAELKRLAYRMTWEDAFRAYLNELNQEKPVILCGDLNVAHQKIDLKN 176
Query: 203 PEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS 262
K + GFT ER++F +L G D +R+ + E + +
Sbjct: 177 W---------------KTNQKNAGFTPEERQKFTELLDSG-FTDTFRYFYPEAEGIYSW- 219
Query: 263 WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
WS + RIDYF+VSE L +R+++ ++ + GSDHCPV + L
Sbjct: 220 WSYRFNARKNNAGWRIDYFVVSESLNERLVSAKIHTDIL------GSDHCPVEVVL 269
>gi|406837825|ref|ZP_11097419.1| exodeoxyribonuclease, partial [Lactobacillus vini DSM 20605]
Length = 181
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 71/193 (36%), Positives = 105/193 (54%), Gaps = 26/193 (13%)
Query: 129 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 187
+++ +GRVI E+E FYL++ Y PN+ K + F R KW+ Q ++ + KP+I
Sbjct: 14 EFDHEGRVITLEYEQFYLVDCYTPNSQQKLKRLDF--RLKWELAFQTYLKKLDQTKPVIL 71
Query: 188 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 247
CGDLNV+H++ID+ + K + GF+ ER+ ++L +G ID+
Sbjct: 72 CGDLNVAHQKIDLKNW---------------KTNRHNAGFSDQERQAMTSLLDKG-FIDS 115
Query: 248 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 307
+RFLH E + WS + RIDYFIVS+ LK+RI+ ++ L Y
Sbjct: 116 FRFLHPETTGIYSW-WSYRFHARENNAGWRIDYFIVSDRLKNRILKADI------LTNIY 168
Query: 308 GSDHCPVSLELSE 320
GSDHCPV LEL E
Sbjct: 169 GSDHCPVELELKE 181
>gi|238854034|ref|ZP_04644388.1| exodeoxyribonuclease III [Lactobacillus gasseri 202-4]
gi|238833354|gb|EEQ25637.1| exodeoxyribonuclease III [Lactobacillus gasseri 202-4]
Length = 254
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 82/281 (29%), Positives = 136/281 (48%), Gaps = 37/281 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPFK--NYQIWWSLA 99
+KF++WN N L +++ F N T D D+ A+Q + Y +W+ A
Sbjct: 1 MKFMSWNVNGLRAALRHG---FVNTFTDLDADIFAIQDTRVEANEVQIDLPGYYQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K YAGTA+ K+ K ++ + + + +GR I EF FY ++ P +G K
Sbjct: 58 KRKGYAGTAVFTKE----KPITVANGFGVPEVDGEGRSITLEFPNFYFIDVQVPFSGEKL 113
Query: 159 EENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ F R W + + +V + KP+I GD++V+HE+ID++ P+
Sbjct: 114 QRLDF--RELWAQTFRNYVTKLMQYKPVIIGGDMSVAHEKIDLAEPD------------- 158
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
++ GFT ERK F +L G ID +R+ H ++ +S+ + K G R
Sbjct: 159 --DNHRHAGFTGIERKEFSELLNAG-FIDTFRYFHPDEAKYTYWSYREDARAKNIG--WR 213
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
+DYF+ S L+D++I ++ L GSDHCP+ L+L
Sbjct: 214 LDYFLASHNLEDKMINTKI------LNNIMGSDHCPIELDL 248
>gi|221330655|ref|NP_001137776.1| recombination repair protein 1, isoform B [Drosophila melanogaster]
gi|220901923|gb|ACL82983.1| recombination repair protein 1, isoform B [Drosophila melanogaster]
Length = 706
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 81/281 (28%), Positives = 129/281 (45%), Gaps = 38/281 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPP-----FKNYQIWW 96
LK +WN L +K + I +PD+ LQ A P Y +W
Sbjct: 454 LKICSWNVAGLRAWLKKDG---LQLIDLEEPDIFCLQETKCANDQLPEEVTRLPGYHPYW 510
Query: 97 SLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 156
YAG A+ K P V + + +++ GR+I AE+E FYL+N Y PN+G
Sbjct: 511 LCMPGGYAGVAIYSK--IMPIHVEYGIGNE--EFDDVGRMITAEYEKFYLINVYVPNSGR 566
Query: 157 KEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 215
K + + R +W+K Q +V + KP++ CGD+NVSH ID+ +P
Sbjct: 567 K--LVNLEPRMRWEKLFQAYVKKLDALKPVVICGDMNVSHMPIDLENP------------ 612
Query: 216 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 275
K + GFT ER + +L G +D +R L+ ++ F W+ + R
Sbjct: 613 ---KNNTKNAGFTQEERDKMTELLGLG-FVDTFRHLYPDRKGAYTF-WTYMANARARNVG 667
Query: 276 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
R+DY +VSE +++ E++ + GSDHCP+++
Sbjct: 668 WRLDYCLVSERFVPKVVEHEIRSQCL------GSDHCPITI 702
>gi|257420126|ref|ZP_05597120.1| exonuclease III [Enterococcus faecalis T11]
gi|257161954|gb|EEU91914.1| exonuclease III [Enterococcus faecalis T11]
Length = 251
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 82/281 (29%), Positives = 135/281 (48%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L VK N F + + D D LQ L Y +W+ A
Sbjct: 1 MKCISWNVNGLRAVVKKN---FMDVFSELDADFFCLQETKLQAGQIDLELPGYHQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K+ + V + L A ++ +GRVI E+ F+++ Y PN+ +
Sbjct: 58 EKKGYSGTAIFAKE--EALSVRYGLGVEA--HDQEGRVITLEYPEFFMVTCYTPNS--QA 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R W+ + ++ + + KP+I CGDLNV+H++ID+ +
Sbjct: 112 ELKRLAYRMTWEDAFRAYLNELNQEKPVILCGDLNVAHQKIDLKNW-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GFT ER++F +L G D +R+ + E + + WS + R
Sbjct: 158 -KTNQKNAGFTPEERQKFTELLDSG-FTDTFRYFYPEAEGIYSW-WSYRFNARKNNAGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+VSE L +R+++ ++ + GSDHCPV + L
Sbjct: 215 IDYFVVSESLNERLVSAKIHTDIL------GSDHCPVEVVL 249
>gi|417838206|ref|ZP_12484444.1| exodeoxyribonuclease III [Lactobacillus johnsonii pf01]
gi|338761749|gb|EGP13018.1| exodeoxyribonuclease III [Lactobacillus johnsonii pf01]
Length = 254
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 81/283 (28%), Positives = 138/283 (48%), Gaps = 40/283 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPFK--NYQIWWSLA 99
+KF++WN N L +++ F N T D D+ +Q + Y +W+ A
Sbjct: 1 MKFMSWNVNGLRAALRHG---FVNTFTDLDADIFGIQDTRVEPNEVKIDLPGYYQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K YAGTA+ K+ K ++ + + + +GR I EF FY +N P +G K
Sbjct: 58 ERKGYAGTAVFTKE----KPITVANGFGVPEVDGEGRSITLEFSNFYFINVQVPFSGEKL 113
Query: 159 EENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ F R W + + +V + KP+I GD++V+HE ID++ P+
Sbjct: 114 QRLDF--RELWAQTFRNYVTKLMQYKPVIIGGDMSVAHERIDLAEPD------------- 158
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
++ +PGFT ERK F +L G ID +R+ H ++ +S+ + R + +
Sbjct: 159 --DNHHRPGFTGIERKEFSELLNAG-FIDTFRYFHPDEAKYTYWSYRDK---EARAENLG 212
Query: 277 -RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
R+DYF+VS L+D++ ++ L GSDHCP+ L++
Sbjct: 213 WRLDYFLVSNNLEDKLTNAKI------LSNIMGSDHCPIELDV 249
>gi|212697551|ref|ZP_03305679.1| hypothetical protein ANHYDRO_02124 [Anaerococcus hydrogenalis DSM
7454]
gi|212675454|gb|EEB35061.1| hypothetical protein ANHYDRO_02124 [Anaerococcus hydrogenalis DSM
7454]
Length = 275
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 89/300 (29%), Positives = 135/300 (45%), Gaps = 50/300 (16%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFS----NFITTFDPDVIALQILMRALSSPPFKNYQI- 94
+K ++WN +SL L +N + S + I D D+I LQ + P K+ +I
Sbjct: 1 MKIISWNIDSLNAALTSDSNRAKMSRDVLDTIIKEDADIICLQETKLPRTGPSKKHKEIL 60
Query: 95 ----------WWSL---ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEF 141
W S A YAG KK F+P +S+ + + R+I EF
Sbjct: 61 ESYFPQYNYAWISSQEPARKSYAGCLTFYKKEFEPI-ISYPTLDAPDTMDQEARLITLEF 119
Query: 142 ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDV 200
E FYL Y PN G + R+ WDK+ ++ + KP+I CGD NV+H+EID+
Sbjct: 120 ENFYLTQVYTPNAG--SGLSRLDLRQVWDKKYANYLEKLDQNKPVIACGDFNVAHKEIDL 177
Query: 201 SHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCG 260
HPE + GFT ER F +L +G +D +R+LH D++
Sbjct: 178 KHPE---------------NNHKSAGFTDEERSGFTNLLNKG-FVDTFRYLH--GDVEGK 219
Query: 261 FSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
++W + K RIDYFIVS+ +K++I +M G DH P+ + +
Sbjct: 220 YTWWAQRVKTSKINNSGWRIDYFIVSDRIKEKIKESDMIDSGDR------QDHTPIYINM 273
>gi|238853021|ref|ZP_04643416.1| exodeoxyribonuclease III [Lactobacillus gasseri 202-4]
gi|238834359|gb|EEQ26601.1| exodeoxyribonuclease III [Lactobacillus gasseri 202-4]
Length = 275
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 86/302 (28%), Positives = 138/302 (45%), Gaps = 52/302 (17%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQILMRALSSPPFKNYQ-- 93
++ ++WN +SL + ++ N I DPD+IA+Q + S+ P K +Q
Sbjct: 1 MRLISWNIDSLNAALTSDSARAKLTRGVLNTIKEKDPDIIAIQ-ETKLRSTGPTKKHQEI 59
Query: 94 ----------IWWSL---ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAE 140
+W S A YAGT L K P+ V+ + + +GR++ E
Sbjct: 60 LAEMFPDYDYVWRSSEEPARKGYAGTMFLYKNTLAPE-VTKPVIAAPEPMDHEGRILTLE 118
Query: 141 FETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEID 199
F+ +Y+ Y PN+G E R+ WD++ E++ + KP+I GD NV+H ID
Sbjct: 119 FDNYYVTQVYTPNSG--NELKRLDDRQVWDEKYTEYLQKLDQNKPVIASGDYNVAHTPID 176
Query: 200 VSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDC 259
+ HPE + GFT ER+ F +LK G D +R +H +++
Sbjct: 177 LKHPE---------------SNHHNAGFTDEERQDFDKLLKLG-FTDTFRKVH--GNVEG 218
Query: 260 GFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLE 317
+SW + K RIDY+IVS + D++ EM L+ DHCP+ LE
Sbjct: 219 VYSWWAQRVRTSKANNSGWRIDYYIVSNRIADQVTKSEM------LDTGERKDHCPIMLE 272
Query: 318 LS 319
++
Sbjct: 273 IN 274
>gi|373452187|ref|ZP_09544104.1| exodeoxyribonuclease III (xth) [Eubacterium sp. 3_1_31]
gi|371967081|gb|EHO84557.1| exodeoxyribonuclease III (xth) [Eubacterium sp. 3_1_31]
Length = 251
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 87/284 (30%), Positives = 141/284 (49%), Gaps = 42/284 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRA-----LSSPPFKNYQIWW 96
+K V+WN N + + F +F D D+ +Q + +P + Y
Sbjct: 1 MKMVSWNVNGIRACMTKG---FMDFFQEIDADIFCIQETKMQPGQLDIVTPGYYQYM--- 54
Query: 97 SLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNG 155
+ AD K Y+GT + K+ +P V++ L +++ +GRVI E+E FYL+ Y PN+
Sbjct: 55 NSADKKGYSGTMVFTKE--KPIAVTYDLGID--EHDHEGRVITCEYENFYLVCVYTPNS- 109
Query: 156 WKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY 214
K+ R +W+ + ++ K +I CGDLNV+H+EID+ +P
Sbjct: 110 -KDGLLRLDYRMQWEDDFRAYLNALKEKKSVIVCGDLNVAHKEIDLKNP----------- 157
Query: 215 VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGK 274
K + GFT ER + + + G ID++R+L+ E++ + WS + +
Sbjct: 158 ----KTNRRNAGFTDEERAKMTTLQQSG-FIDSFRYLYPEQEGIYSW-WSYRFKAREKNA 211
Query: 275 RMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF+VSE+ KD+I Q I + F GSDHCPVSL++
Sbjct: 212 GWRIDYFLVSEDAKDKI-----QEASIHTDVF-GSDHCPVSLDI 249
>gi|158340|gb|AAA62769.1| recombination repair protein [Drosophila melanogaster]
gi|3342457|gb|AAC27621.1| recombination repair protein 1 [Drosophila melanogaster]
Length = 679
Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 81/281 (28%), Positives = 129/281 (45%), Gaps = 38/281 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPP-----FKNYQIWW 96
LK +WN L +K + I +PD+ LQ A P Y +W
Sbjct: 427 LKICSWNVAGLRAWLKKDG---LQLIDLEEPDIFCLQETKCANDQLPEEVTRLPGYHPYW 483
Query: 97 SLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 156
YAG A+ K P V + + +++ GR+I AE+E FYL+N Y PN+G
Sbjct: 484 LCMPGGYAGVAIYSK--IMPIHVEYGIGNE--EFDDVGRMITAEYEKFYLINVYVPNSGR 539
Query: 157 KEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 215
K + + R +W+K Q +V + KP++ CGD+NVSH ID+ +P
Sbjct: 540 K--LVNLEPRMRWEKLFQAYVKKLDALKPVVICGDMNVSHMPIDLENP------------ 585
Query: 216 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 275
K + GFT ER + +L G +D +R L+ ++ F W+ + R
Sbjct: 586 ---KNNTKNAGFTQEERDKMTELLGLG-FVDTFRHLYPDRKGAYTF-WTYMANARARNVG 640
Query: 276 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
R+DY +VSE +++ E++ + GSDHCP+++
Sbjct: 641 WRLDYCLVSERFVPKVVEHEIRSQCL------GSDHCPITI 675
>gi|375364493|ref|YP_005132532.1| exodeoxyribonuclease III [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|421729528|ref|ZP_16168658.1| exodeoxyribonuclease III [Bacillus amyloliquefaciens subsp.
plantarum M27]
gi|371570487|emb|CCF07337.1| exodeoxyribonuclease III [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|407076498|gb|EKE49481.1| exodeoxyribonuclease III [Bacillus amyloliquefaciens subsp.
plantarum M27]
Length = 252
Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 84/282 (29%), Positives = 136/282 (48%), Gaps = 37/282 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L +K + + ++ D++ LQ + S + Y +W+ A
Sbjct: 1 MKLISWNVNGLRAVMKK--IDINTYVQETKADILCLQETKVQDGQVSLQLEGYHDYWNYA 58
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ K+ +P V + L ++ +GRVI EFE +++N Y PN K
Sbjct: 59 VKKGYSGTAVFSKE--KPLHVFYGLGID--DHDQEGRVITLEFENLFVVNCYTPNA--KR 112
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R +W+ +E++ + KP+I CGDLNV+H EID+ +P
Sbjct: 113 GLERIDYRLQWEADFKEYLQKLDRKKPVILCGDLNVAHREIDLKNP-------------- 158
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
K + GF+ ER+ F A+L G D++R+L+ D + +S WS + +
Sbjct: 159 -KANRKNAGFSDQEREAFSALLNTG-FTDSFRYLY--PDREGAYSWWSYRTNAREKNIGW 214
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
R+DY IVS+ LK RI + GSDHCPV + +
Sbjct: 215 RLDYVIVSDRLKPRISEAAI------CADIMGSDHCPVEMTV 250
>gi|170665740|gb|ACB29409.1| apurinic endonuclease-redox protein [Arabidopsis thaliana]
Length = 538
Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 90/294 (30%), Positives = 143/294 (48%), Gaps = 50/294 (17%)
Query: 42 LKFVTWNANSL--LLRVKN----NWPEFSNFITTFDPDVIALQ-ILMRALSSPPFKNYQI 94
+K +TWN N L LL+ ++ + NF D++ LQ ++ K I
Sbjct: 276 VKVMTWNVNGLRGLLKFESFSALQLAQRENF------DILCLQETKLQVKDVEEIKKTLI 329
Query: 95 ------WWSLADSK--YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYL 146
+WS + SK Y+GTA++ + +P V + + ++ +GR++ AEF++FYL
Sbjct: 330 DGYDHSFWSCSVSKLGYSGTAIISR--IKPLSVRYGTGLSGSDHDTEGRIVTAEFDSFYL 387
Query: 147 LNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEF 205
+NTY PN+G + S+ R +WD+ + + + KP++ GDLN +HEEID+ +P
Sbjct: 388 INTYVPNSGDGLKRLSY-RIEEWDRTLSNHIKELEKSKPVVLTGDLNCAHEEIDIFNP-- 444
Query: 206 FAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WS 264
NK GFT ER+ FGA + +D +R K+ G++ W
Sbjct: 445 ----------AGNKR---SAGFTEEERQSFGANFLDKGFVDTFR---KQHPGVVGYTYWG 488
Query: 265 GNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
G+ K R+DYF+VS+ IA + I L GSDHCP+ L L
Sbjct: 489 YRHGGRKTNKGWRLDYFLVSQS-----IAANVHDSYI-LPDINGSDHCPIGLIL 536
>gi|17136678|ref|NP_476841.1| recombination repair protein 1, isoform A [Drosophila melanogaster]
gi|150421656|sp|P27864.2|RRP1_DROME RecName: Full=Recombination repair protein 1; AltName:
Full=DNA-(apurinic or apyrimidinic site) lyase
gi|7295875|gb|AAF51175.1| recombination repair protein 1, isoform A [Drosophila melanogaster]
gi|21428628|gb|AAM49974.1| LP05366p [Drosophila melanogaster]
Length = 679
Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 81/281 (28%), Positives = 129/281 (45%), Gaps = 38/281 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPP-----FKNYQIWW 96
LK +WN L +K + I +PD+ LQ A P Y +W
Sbjct: 427 LKICSWNVAGLRAWLKKDG---LQLIDLEEPDIFCLQETKCANDQLPEEVTRLPGYHPYW 483
Query: 97 SLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 156
YAG A+ K P V + + +++ GR+I AE+E FYL+N Y PN+G
Sbjct: 484 LCMPGGYAGVAIYSK--IMPIHVEYGIGNE--EFDDVGRMITAEYEKFYLINVYVPNSGR 539
Query: 157 KEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 215
K + + R +W+K Q +V + KP++ CGD+NVSH ID+ +P
Sbjct: 540 K--LVNLEPRMRWEKLFQAYVKKLDALKPVVICGDMNVSHMPIDLENP------------ 585
Query: 216 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 275
K + GFT ER + +L G +D +R L+ ++ F W+ + R
Sbjct: 586 ---KNNTKNAGFTQEERDKMTELLGLG-FVDTFRHLYPDRKGAYTF-WTYMANARARNVG 640
Query: 276 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
R+DY +VSE +++ E++ + GSDHCP+++
Sbjct: 641 WRLDYCLVSERFVPKVVEHEIRSQCL------GSDHCPITI 675
>gi|395333468|gb|EJF65845.1| hypothetical protein DICSQDRAFT_77688 [Dichomitus squalens LYAD-421
SS1]
Length = 280
Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 83/294 (28%), Positives = 141/294 (47%), Gaps = 47/294 (15%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPF------KNYQIW 95
++ TWN L K F + D D++ L +++PP + +
Sbjct: 15 VRIATWNICGLAAAQKKG---FKVYFDAEDADILILT--ETKVNNPPADPEFTQRYPHRY 69
Query: 96 WSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNN 154
W+++D K Y+GTA+L K +P V + L K GR++ EFE+ Y++ TY N
Sbjct: 70 WAISDKKTYSGTAILSK--IEPLSVKYDLPGHPDKSAVKGRIVTLEFESCYVIGTYVTNA 127
Query: 155 GWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNG 213
G + +++W+K + ++ + K P+IW GDLNV+ +D+++P
Sbjct: 128 G--TGLKTLDAKKEWNKHFEVYIRELDKKKPVIWTGDLNVAPTALDLANP---------- 175
Query: 214 YVPPNKEDWGQ-PGFTIAERKRFGAILKEG-------RLIDAYRFLHKEKDMDCGFSWSG 265
K +W + PG+T AE F +L E + +D +R H + FS+
Sbjct: 176 -----KTNWNKTPGYTEAETSAFARVLNEDGAEPDAPKFVDVWRKRHPDLRHYTYFSYRF 230
Query: 266 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
N + +G R+D F+VSE L++++ CE++ E + SDHCPV LEL+
Sbjct: 231 N--CREKGLGWRLDMFVVSERLEEKVQMCEIRS-----EIYGASDHCPVVLELA 277
>gi|452857678|ref|YP_007499361.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens
subsp. plantarum UCMB5036]
gi|452081938|emb|CCP23712.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens
subsp. plantarum UCMB5036]
Length = 252
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 84/283 (29%), Positives = 139/283 (49%), Gaps = 39/283 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ---ILMRALSSPPFKNYQIWWSL 98
+K ++WN N L +K + + ++ + D++ LQ + +S P + Y +W+
Sbjct: 1 MKLISWNVNGLRAVMKK--IDINTYVQETEADILCLQETKVQDGQVSLQP-EGYHAYWNY 57
Query: 99 ADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWK 157
A K Y+GTA+ K+ +P V + L ++ +GRVI EFE +++N Y PN K
Sbjct: 58 AVKKGYSGTAVFSKE--KPLHVFYGLGID--DHDQEGRVITLEFENVFVVNCYTPNA--K 111
Query: 158 EEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVP 216
R +W+ ++++ + KP+I CGDLNV+H EID+ +P
Sbjct: 112 RGLERIDYRLQWEADFKDYLQKLDRKKPVILCGDLNVAHREIDLKNP------------- 158
Query: 217 PNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKR 275
K + GF+ ER+ F A+L G D++R+L+ D + +S WS + +
Sbjct: 159 --KANRKNAGFSEQEREAFSALLNAG-FTDSFRYLY--PDREGAYSWWSYRTNAREKNIG 213
Query: 276 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
R+DY IVS+ LK RI + GSDHCPV + +
Sbjct: 214 WRLDYVIVSDRLKQRISQAAI------CADIMGSDHCPVEMTV 250
>gi|395244503|ref|ZP_10421467.1| Exodeoxyribonuclease III [Lactobacillus hominis CRBIP 24.179]
gi|394483150|emb|CCI82475.1| Exodeoxyribonuclease III [Lactobacillus hominis CRBIP 24.179]
Length = 265
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 83/289 (28%), Positives = 138/289 (47%), Gaps = 44/289 (15%)
Query: 38 KKDPLKFVTWNANSLLLRVKNNWPEFSNFITTF---DPDVIALQILMRA---LSSPPFKN 91
++ +KF++WN N +++ F+ TF + D+ +Q + + +S
Sbjct: 8 RRITMKFISWNVNGFRAAMRHG------FLDTFKELNADIFGMQDIRLSPNEVSIDTTGY 61
Query: 92 YQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYA 151
YQ W + + GTA+ K +P V+ + + +++ GR I E+ FY + TY
Sbjct: 62 YQYWNYSKEKSFDGTAIFTK--IKPLAVANGIGVS--EFDQQGRTITLEYPNFYFVTTYV 117
Query: 152 PNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAK 210
P +G E+ R WD+ ++++L+ + KP+I GD++V+HE ID++ P
Sbjct: 118 PFSG--EQLQRLDFRIAWDQAFRKYLLKLEANKPVIIGGDMSVAHEPIDLAQP------- 168
Query: 211 LNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLH-KEKDMDCGFSWSGNPIG 269
E+ GFT ER F +L G D +R+LH EKD+ WS G
Sbjct: 169 --------SENHHHAGFTEQERDDFTKLLNSG-FTDTFRYLHPNEKDIYS--YWSYRYHG 217
Query: 270 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
+ + + R+DY +VS L +I + L GSDHCPVSLE+
Sbjct: 218 REKNEGWRLDYILVSNSLDSKIKKANI------LTEIPGSDHCPVSLEM 260
>gi|90962461|ref|YP_536377.1| exodeoxyribonuclease III [Lactobacillus salivarius UCC118]
gi|301299216|ref|ZP_07205503.1| exodeoxyribonuclease III [Lactobacillus salivarius ACS-116-V-Col5a]
gi|90821655|gb|ABE00294.1| Exodeoxyribonuclease III [Lactobacillus salivarius UCC118]
gi|300853176|gb|EFK80773.1| exodeoxyribonuclease III [Lactobacillus salivarius ACS-116-V-Col5a]
Length = 275
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 84/302 (27%), Positives = 136/302 (45%), Gaps = 52/302 (17%)
Query: 42 LKFVTWNANSL-------LLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPP------ 88
+K ++WN +SL R K + + I +PD+IA+Q + + P
Sbjct: 1 MKLISWNIDSLNAALTSDSARAKQSREVLATIIDE-NPDIIAIQETKLSATGPTKKHQTI 59
Query: 89 ----FKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAE 140
F +Y+I W A YAGT L K P +S+ + +GR+I E
Sbjct: 60 LAEQFPDYEIAWRSSQEPARKGYAGTMFLYKNNLNPT-ISYPEIDAPEPMDSEGRIITLE 118
Query: 141 FETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEID 199
F++FY+ Y PN G + R+ WD++ ++++ KPL+ GD NV+H+EID
Sbjct: 119 FDSFYVTQVYTPNAG--DGLRRLAERQVWDEKYADYLVSLDQNKPLLSSGDFNVAHKEID 176
Query: 200 VSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDC 259
++HP + GFT ER F +L +G D +R++H D+
Sbjct: 177 LAHP---------------GNNHHSAGFTDEERAGFTNLLNKG-FTDTFRYVH--GDVKD 218
Query: 260 GFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLE 317
+SW + K RIDY++ S + D+I+ EM L+ DH P+ LE
Sbjct: 219 VYSWWAQRSRTSKINNSGWRIDYWLASNRIADKIVRSEM------LDSGERRDHTPIVLE 272
Query: 318 LS 319
++
Sbjct: 273 IN 274
>gi|418001612|ref|ZP_12641751.1| exodeoxyribonuclease III [Lactobacillus casei UCD174]
gi|410546206|gb|EKQ20470.1| exodeoxyribonuclease III [Lactobacillus casei UCD174]
Length = 252
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 88/283 (31%), Positives = 134/283 (47%), Gaps = 45/283 (15%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ-ILMRA----LSSPPFKNYQIWW 96
+K ++WN N L +K +F D D LQ M+A L P + Y +
Sbjct: 1 MKLISWNVNGLRAVLKK---DFMTIFNELDADWFCLQETKMQAGQVELDLPGYHQY---F 54
Query: 97 SLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNG 155
+ A+ K Y+GTA+ K +P V++ + +++ +GR+I E+ FYL+ Y PN+G
Sbjct: 55 NYAERKGYSGTAIFTKH--EPLNVTYGM--GVPEHDTEGRIITLEYPNFYLMTVYTPNSG 110
Query: 156 WKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY 214
E R++WDK + Q + K PL++CGDLNV+H+EID+ +
Sbjct: 111 --GELKRLDYRQQWDKDFLAYTNQLAAKKPLVYCGDLNVAHQEIDLKN------------ 156
Query: 215 VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRG 273
+K + GFT ER F L +G ID +R L+ + +S WS +
Sbjct: 157 ---DKTNHHNAGFTDEERADFTKQL-DGGFIDTFRNLYPDT---VTYSWWSYRFHARANN 209
Query: 274 KRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
RIDYF+ S + K I ++ L GSDHCPV L
Sbjct: 210 AGWRIDYFVSSRDFKPYIQDAKI------LTDIMGSDHCPVEL 246
>gi|422696461|ref|ZP_16754419.1| exodeoxyribonuclease III [Enterococcus faecalis TX1346]
gi|315174931|gb|EFU18948.1| exodeoxyribonuclease III [Enterococcus faecalis TX1346]
Length = 251
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 82/281 (29%), Positives = 135/281 (48%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L VK N F + D D LQ L Y +W+ A
Sbjct: 1 MKCISWNVNGLRAVVKKN---FMDVFNELDADFFCLQETKLQAGQIDLELPGYHQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA++ K+ + V + L A ++ +GRVI E+ F+++ Y PN+ +
Sbjct: 58 EKKGYSGTAIVAKE--EALSVRYGLGIEA--HDQEGRVITLEYPEFFMVTCYTPNS--QA 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R W+ + ++ + + KP+I CGDLNV+H++ID+ +
Sbjct: 112 ELKRLAYRMTWEDAFRAYLNELNQEKPVILCGDLNVAHQKIDLKNW-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GFT ER++F +L G D +R+ + E + + WS + R
Sbjct: 158 -KTNQKNAGFTPEERQKFTELLDSG-FTDTFRYFYPEAEGIYSW-WSYRFNARKNNAGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+VSE L +R+++ ++ + GSDHCPV + L
Sbjct: 215 IDYFVVSESLNERLVSAKIHTDIL------GSDHCPVEVVL 249
>gi|297583616|ref|YP_003699396.1| exodeoxyribonuclease III [Bacillus selenitireducens MLS10]
gi|297142073|gb|ADH98830.1| exodeoxyribonuclease III [Bacillus selenitireducens MLS10]
Length = 254
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 81/283 (28%), Positives = 138/283 (48%), Gaps = 37/283 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L ++ F +F D+ A+Q L + Y+ +W+ A
Sbjct: 1 MKLISWNVNGLRACIRKG---FLSFFEEAGADLFAVQEIKLQEGQVDLDLQGYRQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K +P +V F + + +GR++ EF +F+L+N Y PN+ +
Sbjct: 58 EKKGYSGTAVFTK--VEPLRV-FRNGVGNERQQSEGRILTLEFASFFLVNVYTPNS--QR 112
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R +W+ ++ + KP+I CGD+NV+HEEID+ +
Sbjct: 113 DLARLHERLQWEDAFYAYLQELENEKPVIVCGDMNVAHEEIDLRNA-------------- 158
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
K + G GFT ER + + E LID+YR+ + D + ++ WS + R
Sbjct: 159 -KSNRGNSGFTTEERAKMTRLQSEW-LIDSYRYYY--PDQEGAYTWWSYMKTVRERNIGW 214
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
RIDYF+VS++LK + + + GSDHCP+ L ++
Sbjct: 215 RIDYFLVSDKLKSAMNDVSIYSDVL------GSDHCPIGLTMA 251
>gi|308175792|ref|YP_003922497.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens DSM
7]
gi|384161680|ref|YP_005543753.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens
TA208]
gi|384166602|ref|YP_005547981.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens LL3]
gi|384170793|ref|YP_005552171.1| 5'3'-exonuclease [Bacillus amyloliquefaciens XH7]
gi|307608656|emb|CBI45027.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens DSM
7]
gi|328555768|gb|AEB26260.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens
TA208]
gi|328914157|gb|AEB65753.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens LL3]
gi|341830072|gb|AEK91323.1| 5'3'-exonuclease [Bacillus amyloliquefaciens XH7]
Length = 252
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 85/283 (30%), Positives = 137/283 (48%), Gaps = 39/283 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ---ILMRALSSPPFKNYQIWWSL 98
+K ++WN N L +K + + + D++ LQ + +S P + Y +W+
Sbjct: 1 MKLISWNVNGLRAVMKK--IDINTCLQETKADILCLQETKVQDGQVSLQP-EGYHDYWNY 57
Query: 99 ADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWK 157
A K Y+GTA+ K +P +VS+ L ++ +GRVI EFE +++N Y PN K
Sbjct: 58 AVKKGYSGTAVFSK--VKPLQVSYGLGID--DHDQEGRVITLEFENVFVVNCYTPNA--K 111
Query: 158 EEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVP 216
R +W+ ++++ + K P+I CGDLNV+H EID+ +P
Sbjct: 112 RGLERIDYRLQWEADFKDYLQKLDQKKPVILCGDLNVAHREIDLKNP------------- 158
Query: 217 PNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKR 275
K + GF+ ER+ F +L G D++R+L+ D + +S WS + +
Sbjct: 159 --KANRKNAGFSDQEREAFSVLLNAG-FTDSFRYLY--PDQEGAYSWWSYRTNAREKNIG 213
Query: 276 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
R+DY IVS+ LK RI + GSDHCPV + L
Sbjct: 214 WRLDYVIVSDRLKQRITQAAI------CADIMGSDHCPVEMTL 250
>gi|257066091|ref|YP_003152347.1| exodeoxyribonuclease III Xth [Anaerococcus prevotii DSM 20548]
gi|256797971|gb|ACV28626.1| exodeoxyribonuclease III Xth [Anaerococcus prevotii DSM 20548]
Length = 274
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 93/311 (29%), Positives = 135/311 (43%), Gaps = 72/311 (23%)
Query: 42 LKFVTWNANSL-----------------LLRVKNNWPEFSNFITTFDPDVIALQILMRAL 84
+KF++WN +SL LL +KN +PDVIALQ
Sbjct: 1 MKFISWNIDSLNAALTSDSKRAVMSRDVLLTIKNE-----------NPDVIALQETKLPA 49
Query: 85 SSPPFKNYQ-----------IWWSL---ADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 130
+ P K+ + +W S A YAGT L KK K+ SF
Sbjct: 50 NGPSKKHVEKLSEFFPDYDYVWISSRPGARKSYAGTMTLYKKGLDVKE-SFPEIGAPDTM 108
Query: 131 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 189
+ +GR++ EFE FY Y PN G E R +WDK +++ + KP+I G
Sbjct: 109 DLEGRILTLEFEDFYFTQVYTPNAG--GELKRLPLREEWDKLYADYLAELDKNKPVIATG 166
Query: 190 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 249
D NV+HEEID++HPE N ++ GFT ER+ F +L G D +R
Sbjct: 167 DFNVAHEEIDLAHPE-------NNHM--------SAGFTDEERRGFTNLLNRG-FTDTFR 210
Query: 250 FLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 307
H K+++ ++W + K RIDYF+VS+ L + +I + G
Sbjct: 211 --HLNKNLEGAYTWWAQRVKTSKINNSGWRIDYFLVSDRLMEDVIDSTIIDSGDR----- 263
Query: 308 GSDHCPVSLEL 318
DH P+ LE+
Sbjct: 264 -QDHTPIMLEI 273
>gi|256961018|ref|ZP_05565189.1| exonuclease III [Enterococcus faecalis Merz96]
gi|293384592|ref|ZP_06630458.1| exodeoxyribonuclease III [Enterococcus faecalis R712]
gi|293386821|ref|ZP_06631392.1| exodeoxyribonuclease III [Enterococcus faecalis S613]
gi|312906418|ref|ZP_07765426.1| exodeoxyribonuclease III [Enterococcus faecalis DAPTO 512]
gi|312979423|ref|ZP_07791111.1| exodeoxyribonuclease III [Enterococcus faecalis DAPTO 516]
gi|422701088|ref|ZP_16758929.1| exodeoxyribonuclease III [Enterococcus faecalis TX1342]
gi|256951514|gb|EEU68146.1| exonuclease III [Enterococcus faecalis Merz96]
gi|291078138|gb|EFE15502.1| exodeoxyribonuclease III [Enterococcus faecalis R712]
gi|291083824|gb|EFE20787.1| exodeoxyribonuclease III [Enterococcus faecalis S613]
gi|310627572|gb|EFQ10855.1| exodeoxyribonuclease III [Enterococcus faecalis DAPTO 512]
gi|311287794|gb|EFQ66350.1| exodeoxyribonuclease III [Enterococcus faecalis DAPTO 516]
gi|315170467|gb|EFU14484.1| exodeoxyribonuclease III [Enterococcus faecalis TX1342]
Length = 251
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 82/281 (29%), Positives = 134/281 (47%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L VK N F + D D LQ L Y +W+ A
Sbjct: 1 MKCISWNVNGLRAVVKKN---FMDVFNELDADFFCLQETKLQAGQIDLELPGYHQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K+ + V + L A ++ +GRVI E+ F+++ Y PN+ +
Sbjct: 58 EKKGYSGTAIFAKE--EALSVRYGLGVEA--HDQEGRVITLEYPEFFMVTCYTPNS--QA 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R W+ + ++ + + KP+I CGDLNV+H++ID+ +
Sbjct: 112 ELKRLAYRMTWEDAFRAYLNELNQEKPVILCGDLNVAHQKIDLKNW-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GFT ER++F +L G D +R+ + E + + WS + R
Sbjct: 158 -KTNQKNAGFTPEERQKFTELLDSG-FTDTFRYFYPEAEGIYSW-WSYRFNARKNNAGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+VSE L +R+++ ++ + GSDHCPV + L
Sbjct: 215 IDYFVVSESLNERLVSAKIHTDIL------GSDHCPVEVVL 249
>gi|227891490|ref|ZP_04009295.1| exodeoxyribonuclease III [Lactobacillus salivarius ATCC 11741]
gi|227866637|gb|EEJ74058.1| exodeoxyribonuclease III [Lactobacillus salivarius ATCC 11741]
Length = 275
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 85/302 (28%), Positives = 135/302 (44%), Gaps = 52/302 (17%)
Query: 42 LKFVTWNANSL-------LLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPP------ 88
+K ++WN +SL R K + + I +PD+IA+Q + + P
Sbjct: 1 MKLISWNIDSLNAALTSDSARAKQSREVLATIIDE-NPDIIAIQETKLSATGPTKKHQTI 59
Query: 89 ----FKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAE 140
F +Y+I W A YAGT L K P VS+ + +GR+I E
Sbjct: 60 LAEQFPDYEITWRSSQEPARKGYAGTMFLYKNNLNPT-VSYPEIDAPEPMDSEGRIITLE 118
Query: 141 FETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEID 199
F+ FY+ Y PN G + R+ WD++ ++++ KPL+ GD NV+H+EID
Sbjct: 119 FDNFYVTQVYTPNAG--DGLRRLAERQVWDEKYADYLVSLDQNKPLLSSGDFNVAHKEID 176
Query: 200 VSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDC 259
++HP + GFT ER F +L +G D +R++H D+
Sbjct: 177 LAHP---------------GNNHHSAGFTDEERAGFTNLLNKG-FTDTFRYVH--GDVKD 218
Query: 260 GFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLE 317
+SW + K RIDY++ S + D+I+ EM L+ DH P+ LE
Sbjct: 219 VYSWWAQRSRTSKINNSGWRIDYWLASNRIADKIVRSEM------LDSGERRDHTPIVLE 272
Query: 318 LS 319
++
Sbjct: 273 IN 274
>gi|116628715|ref|YP_813887.1| exonuclease III [Lactobacillus gasseri ATCC 33323]
gi|282852356|ref|ZP_06261698.1| exodeoxyribonuclease III [Lactobacillus gasseri 224-1]
gi|311111551|ref|ZP_07712948.1| exodeoxyribonuclease III [Lactobacillus gasseri MV-22]
gi|116094297|gb|ABJ59449.1| Exonuclease III [Lactobacillus gasseri ATCC 33323]
gi|282556098|gb|EFB61718.1| exodeoxyribonuclease III [Lactobacillus gasseri 224-1]
gi|311066705|gb|EFQ47045.1| exodeoxyribonuclease III [Lactobacillus gasseri MV-22]
Length = 275
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 86/302 (28%), Positives = 138/302 (45%), Gaps = 52/302 (17%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQILMRALSSPPFKNYQ-- 93
++ ++WN +SL + ++ N I DPD+IA+Q + S+ P K +Q
Sbjct: 1 MRLISWNIDSLNAALTSDSARAKLTRGVLNTIKEKDPDIIAIQ-ETKLRSTGPTKKHQEI 59
Query: 94 ----------IWWSL---ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAE 140
+W S A YAGT L K P+ V+ + + +GR++ E
Sbjct: 60 LAEMFPDYDYVWRSSEEPARKGYAGTMFLYKNTLAPE-VTKPVIGAPEPMDHEGRILTLE 118
Query: 141 FETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEID 199
F+ +Y+ Y PN+G E R+ WD++ E++ + KP+I GD NV+H ID
Sbjct: 119 FDNYYVTQVYTPNSG--NELKRLDDRQVWDEKYTEYLQKLDQNKPVIASGDYNVAHTPID 176
Query: 200 VSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDC 259
+ HPE + GFT ER+ F +LK G D +R +H +++
Sbjct: 177 LKHPE---------------SNHHNAGFTDEERQDFDKLLKLG-FTDTFRKVH--GNVEG 218
Query: 260 GFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLE 317
+SW + K RIDY+IVS + D++ EM L+ DHCP+ LE
Sbjct: 219 VYSWWAQRVRTSKANNSGWRIDYYIVSNRIADQVTKSEM------LDTGERKDHCPIMLE 272
Query: 318 LS 319
++
Sbjct: 273 IN 274
>gi|301096360|ref|XP_002897277.1| exodeoxyribonuclease [Phytophthora infestans T30-4]
gi|262107161|gb|EEY65213.1| exodeoxyribonuclease [Phytophthora infestans T30-4]
Length = 362
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 96/302 (31%), Positives = 137/302 (45%), Gaps = 48/302 (15%)
Query: 6 KPIEKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWP-EFS 64
+PI E AK A PS +D S ++ K V WN N L +K +
Sbjct: 81 EPISAELQAKIDAF-PSFED------VSRRSADDIDTKIVAWNVNGLRAVLKRDESVHLR 133
Query: 65 NFITTFDPDVIALQI-------LMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPK 117
++ DPD+ L L + P +Q W YA TA+ K +P
Sbjct: 134 AYVAQEDPDIFCLSETKICRDELQKLEDFLPQYEHQYWSCAIKKGYASTAIFTKT--KPL 191
Query: 118 KV----------SFSLEKTA-LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRR 166
V S + K+A + +GR + EF F+L++TY PN G K E F R
Sbjct: 192 SVKDEIVVGDHDSKGVAKSANGGKDQEGRFLALEFPKFWLVHTYVPNAGGKLERLDF-RT 250
Query: 167 RKWDKRI-QEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQP 225
+WDK + +E KP+IWCGDLNV+H+EID+ +P K +
Sbjct: 251 TQWDKAMHREMKEMEKTKPVIWCGDLNVAHQEIDIHNP---------------KGNHKSA 295
Query: 226 GFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSE 285
GFT ER+ FG IL++G +D +R LH + F + N K +G R+DYF+VSE
Sbjct: 296 GFTDEERESFGEILEDG-FVDTFRHLHPDTVEYSYFGYRHNMRAKNKG--WRLDYFVVSE 352
Query: 286 EL 287
+L
Sbjct: 353 KL 354
>gi|422731891|ref|ZP_16788239.1| exodeoxyribonuclease III [Enterococcus faecalis TX0645]
gi|315162099|gb|EFU06116.1| exodeoxyribonuclease III [Enterococcus faecalis TX0645]
Length = 251
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 82/281 (29%), Positives = 134/281 (47%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L VK N F + D D LQ L Y +W+ A
Sbjct: 1 MKCISWNVNGLRAVVKKN---FMDVFNELDADFFCLQETKLQAGQIDLELPGYHQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K+ + V + L A ++ +GRVI E+ F+++ Y PN+ +
Sbjct: 58 EKKGYSGTAIFAKE--EALSVRYGLGIEA--HDQEGRVITLEYPEFFMVTCYTPNS--QA 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R W+ + ++ + + KP+I CGDLNV+H++ID+ +
Sbjct: 112 ELKRLAYRMTWEDAFRAYLNELNQEKPVILCGDLNVAHQKIDLKNW-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GFT ER++F +L G D +R+ + E + + WS + R
Sbjct: 158 -KTNQKNAGFTPEERQKFTGLLDSG-FTDTFRYFYPEAEGIYSW-WSYRFNARKNNAGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+VSE L +R+++ ++ + GSDHCPV + L
Sbjct: 215 IDYFVVSESLNERLVSAKIHTDIL------GSDHCPVEVVL 249
>gi|116494506|ref|YP_806240.1| exonuclease III [Lactobacillus casei ATCC 334]
gi|191637944|ref|YP_001987110.1| exodeoxyribonuclease III [Lactobacillus casei BL23]
gi|227535523|ref|ZP_03965572.1| exodeoxyribonuclease III [Lactobacillus paracasei subsp. paracasei
ATCC 25302]
gi|385819687|ref|YP_005856074.1| Exodeoxyribonuclease III [Lactobacillus casei LC2W]
gi|385822845|ref|YP_005859187.1| Exodeoxyribonuclease III [Lactobacillus casei BD-II]
gi|417983078|ref|ZP_12623720.1| exodeoxyribonuclease III [Lactobacillus casei 21/1]
gi|417989182|ref|ZP_12629696.1| exodeoxyribonuclease III [Lactobacillus casei A2-362]
gi|417992549|ref|ZP_12632904.1| exodeoxyribonuclease III [Lactobacillus casei CRF28]
gi|417995780|ref|ZP_12636067.1| exodeoxyribonuclease III [Lactobacillus casei M36]
gi|417998717|ref|ZP_12638932.1| exodeoxyribonuclease III [Lactobacillus casei T71499]
gi|418004708|ref|ZP_12644721.1| exodeoxyribonuclease III [Lactobacillus casei UW1]
gi|418013374|ref|ZP_12653018.1| exodeoxyribonuclease III [Lactobacillus casei Lpc-37]
gi|116104656|gb|ABJ69798.1| Exonuclease III [Lactobacillus casei ATCC 334]
gi|190712246|emb|CAQ66252.1| Exodeoxyribonuclease III [Lactobacillus casei BL23]
gi|227186845|gb|EEI66912.1| exodeoxyribonuclease III [Lactobacillus paracasei subsp. paracasei
ATCC 25302]
gi|327382014|gb|AEA53490.1| Exodeoxyribonuclease III [Lactobacillus casei LC2W]
gi|327385172|gb|AEA56646.1| Exodeoxyribonuclease III [Lactobacillus casei BD-II]
gi|410528859|gb|EKQ03697.1| exodeoxyribonuclease III [Lactobacillus casei 21/1]
gi|410533128|gb|EKQ07815.1| exodeoxyribonuclease III [Lactobacillus casei CRF28]
gi|410536484|gb|EKQ11077.1| exodeoxyribonuclease III [Lactobacillus casei M36]
gi|410539278|gb|EKQ13814.1| exodeoxyribonuclease III [Lactobacillus casei A2-362]
gi|410540321|gb|EKQ14836.1| exodeoxyribonuclease III [Lactobacillus casei T71499]
gi|410548944|gb|EKQ23126.1| exodeoxyribonuclease III [Lactobacillus casei UW1]
gi|410555900|gb|EKQ29831.1| exodeoxyribonuclease III [Lactobacillus casei Lpc-37]
Length = 252
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 88/283 (31%), Positives = 133/283 (46%), Gaps = 45/283 (15%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ-ILMRA----LSSPPFKNYQIWW 96
+K ++WN N L +K +F D D LQ M+A L P + Y +
Sbjct: 1 MKLISWNVNGLRAVLKK---DFMTIFNELDADWFCLQETKMQAGQVELDLPGYHQY---F 54
Query: 97 SLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNG 155
+ A+ K Y+GTA+ K +P V++ + +++ +GR+I E+ FYL+ Y PN+G
Sbjct: 55 NYAERKGYSGTAIFTKH--EPLNVTYGM--GVPEHDTEGRIITLEYPNFYLMTVYTPNSG 110
Query: 156 WKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY 214
E R++WDK + Q + K PL++CGDLNV+H+EID+ +
Sbjct: 111 --GELKRLDYRQQWDKDFLAYTNQLAAKKPLVYCGDLNVAHQEIDLKN------------ 156
Query: 215 VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRG 273
+K + GFT ER F L G ID +R L+ + +S WS +
Sbjct: 157 ---DKTNHHNAGFTDEERADFTKQLDSG-FIDTFRNLYPDT---VTYSWWSYRFHARANN 209
Query: 274 KRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
RIDYF+ S + K I ++ L GSDHCPV L
Sbjct: 210 AGWRIDYFVSSRDFKPYIQDAKI------LTDIMGSDHCPVEL 246
>gi|407016220|gb|EKE29973.1| Exodeoxyribonuclease III Xth [uncultured bacterium (gcode 4)]
Length = 255
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 84/285 (29%), Positives = 139/285 (48%), Gaps = 40/285 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPFKN------YQIW 95
+KF++WN N + ++ F ++I PD+IALQ + P + Y ++
Sbjct: 1 MKFISWNVNWIRAAIQKG---FLDYINNEKPDIIALQEVKATEDQFPARMDMEMMWYSVY 57
Query: 96 W-SLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNN 154
W S + + Y+ TA+ K+ +P VS+ L +++ + R+I E+E FY + Y PN+
Sbjct: 58 WNSASKNWYSWTAVFTKE--KPLSVSYWLWME--EHDNEWRIITVEYEKFYFVTVYTPNS 113
Query: 155 GWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNG 213
K E + R+ WD + + + KP+ C DLNV+H+EID+++P+
Sbjct: 114 --KRELERLEYRQLWDSLFLDHMRRLEAIKPIFVCWDLNVAHKEIDLTNPK--------- 162
Query: 214 YVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRG 273
PN+ FT ER F L G ID +RF + +K + + WS + R
Sbjct: 163 ---PNR---WNAWFTDEERMGFQKFLDAG-FIDTFRFFYPDKAGEYSW-WSNFANARSRN 214
Query: 274 KRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF+ S LK+ + + ++ GSDHCPV +E+
Sbjct: 215 IGWRIDYFLASWILKENL------KNAFIMQQTLGSDHCPVWIEV 253
>gi|409996804|ref|YP_006751205.1| exodeoxyribonuclease [Lactobacillus casei W56]
gi|406357816|emb|CCK22086.1| Exodeoxyribonuclease [Lactobacillus casei W56]
Length = 290
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 88/283 (31%), Positives = 133/283 (46%), Gaps = 45/283 (15%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ-ILMRA----LSSPPFKNYQIWW 96
+K ++WN N L +K +F D D LQ M+A L P + Y +
Sbjct: 39 MKLISWNVNGLRAVLK---KDFMTIFNELDADWFCLQETKMQAGQVELDLPGYHQY---F 92
Query: 97 SLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNG 155
+ A+ K Y+GTA+ K +P V++ + +++ +GR+I E+ FYL+ Y PN+G
Sbjct: 93 NYAERKGYSGTAIFTKH--EPLNVTYGM--GVPEHDTEGRIITLEYPNFYLMTVYTPNSG 148
Query: 156 WKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY 214
E R++WDK + Q + K PL++CGDLNV+H+EID+ +
Sbjct: 149 --GELKRLDYRQQWDKDFLAYTNQLAAKKPLVYCGDLNVAHQEIDLKN------------ 194
Query: 215 VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRG 273
+K + GFT ER F L G ID +R L+ + +S WS +
Sbjct: 195 ---DKTNHHNAGFTDEERADFTKQLDSG-FIDTFRNLYPDT---VTYSWWSYRFHARANN 247
Query: 274 KRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
RIDYF+ S + K I ++ L GSDHCPV L
Sbjct: 248 AGWRIDYFVSSRDFKPYIQDAKI------LTDIMGSDHCPVEL 284
>gi|418010415|ref|ZP_12650192.1| exodeoxyribonuclease III [Lactobacillus casei Lc-10]
gi|410553904|gb|EKQ27892.1| exodeoxyribonuclease III [Lactobacillus casei Lc-10]
Length = 252
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 88/283 (31%), Positives = 133/283 (46%), Gaps = 45/283 (15%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ-ILMRA----LSSPPFKNYQIWW 96
+K ++WN N L +K +F D D LQ M+A L P + Y +
Sbjct: 1 MKLISWNVNGLRAVLKK---DFMTIFNELDADWFCLQETKMQAGQVKLDLPGYHQY---F 54
Query: 97 SLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNG 155
+ A+ K Y+GTA+ K +P V++ + +++ +GR+I E+ FYL+ Y PN+G
Sbjct: 55 NYAERKGYSGTAIFTKH--EPLNVTYGM--GVPEHDTEGRIITLEYPNFYLMTVYTPNSG 110
Query: 156 WKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY 214
E R++WDK + Q + K PL++CGDLNV+H+EID+ +
Sbjct: 111 --GELKRLDYRQQWDKDFLAYTNQLAAKKPLVYCGDLNVAHQEIDLKN------------ 156
Query: 215 VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRG 273
+K + GFT ER F L G ID +R L+ + +S WS +
Sbjct: 157 ---DKTNHHNAGFTDEERADFTKQLDSG-FIDTFRNLYPDT---VTYSWWSYRFHARANN 209
Query: 274 KRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
RIDYF+ S + K I ++ L GSDHCPV L
Sbjct: 210 AGWRIDYFVSSRDFKPYIQDAKI------LTDIMGSDHCPVEL 246
>gi|229544881|ref|ZP_04433606.1| exodeoxyribonuclease [Enterococcus faecalis TX1322]
gi|256963841|ref|ZP_05568012.1| exonuclease III [Enterococcus faecalis HIP11704]
gi|257081702|ref|ZP_05576063.1| exonuclease III [Enterococcus faecalis E1Sol]
gi|257087702|ref|ZP_05582063.1| exonuclease III [Enterococcus faecalis D6]
gi|257416904|ref|ZP_05593898.1| exonuclease III [Enterococcus faecalis ARO1/DG]
gi|257421653|ref|ZP_05598643.1| exodeoxyribonuclease [Enterococcus faecalis X98]
gi|307271787|ref|ZP_07553058.1| exodeoxyribonuclease III [Enterococcus faecalis TX0855]
gi|307278718|ref|ZP_07559785.1| exodeoxyribonuclease III [Enterococcus faecalis TX0860]
gi|307288645|ref|ZP_07568626.1| exodeoxyribonuclease III [Enterococcus faecalis TX0109]
gi|384514063|ref|YP_005709156.1| exodeoxyribonuclease III [Enterococcus faecalis OG1RF]
gi|422703204|ref|ZP_16761029.1| exodeoxyribonuclease III [Enterococcus faecalis TX1302]
gi|422707239|ref|ZP_16764936.1| exodeoxyribonuclease III [Enterococcus faecalis TX0043]
gi|422720136|ref|ZP_16776759.1| exodeoxyribonuclease III [Enterococcus faecalis TX0017]
gi|422724491|ref|ZP_16780967.1| exodeoxyribonuclease III [Enterococcus faecalis TX2137]
gi|422734487|ref|ZP_16790776.1| exodeoxyribonuclease III [Enterococcus faecalis TX1341]
gi|422741447|ref|ZP_16795472.1| exodeoxyribonuclease III [Enterococcus faecalis TX2141]
gi|424672083|ref|ZP_18109064.1| exodeoxyribonuclease III [Enterococcus faecalis 599]
gi|229309982|gb|EEN75969.1| exodeoxyribonuclease [Enterococcus faecalis TX1322]
gi|256954337|gb|EEU70969.1| exonuclease III [Enterococcus faecalis HIP11704]
gi|256989732|gb|EEU77034.1| exonuclease III [Enterococcus faecalis E1Sol]
gi|256995732|gb|EEU83034.1| exonuclease III [Enterococcus faecalis D6]
gi|257158732|gb|EEU88692.1| exonuclease III [Enterococcus faecalis ARO1/DG]
gi|257163477|gb|EEU93437.1| exodeoxyribonuclease [Enterococcus faecalis X98]
gi|295113675|emb|CBL32312.1| exodeoxyribonuclease III [Enterococcus sp. 7L76]
gi|306500399|gb|EFM69735.1| exodeoxyribonuclease III [Enterococcus faecalis TX0109]
gi|306504579|gb|EFM73782.1| exodeoxyribonuclease III [Enterococcus faecalis TX0860]
gi|306511665|gb|EFM80664.1| exodeoxyribonuclease III [Enterococcus faecalis TX0855]
gi|315025498|gb|EFT37430.1| exodeoxyribonuclease III [Enterococcus faecalis TX2137]
gi|315032586|gb|EFT44518.1| exodeoxyribonuclease III [Enterococcus faecalis TX0017]
gi|315143871|gb|EFT87887.1| exodeoxyribonuclease III [Enterococcus faecalis TX2141]
gi|315155597|gb|EFT99613.1| exodeoxyribonuclease III [Enterococcus faecalis TX0043]
gi|315165304|gb|EFU09321.1| exodeoxyribonuclease III [Enterococcus faecalis TX1302]
gi|315168718|gb|EFU12735.1| exodeoxyribonuclease III [Enterococcus faecalis TX1341]
gi|327535952|gb|AEA94786.1| exodeoxyribonuclease III [Enterococcus faecalis OG1RF]
gi|402357128|gb|EJU91842.1| exodeoxyribonuclease III [Enterococcus faecalis 599]
Length = 251
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 82/281 (29%), Positives = 134/281 (47%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L VK N F + D D LQ L Y +W+ A
Sbjct: 1 MKCISWNVNGLRAVVKKN---FMDVFNELDADFFCLQETKLQAGQIDLELPGYHQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K+ + V + L A ++ +GRVI E+ F+++ Y PN+ +
Sbjct: 58 EKKGYSGTAIFAKE--EALSVRYGLGIEA--HDQEGRVITLEYPEFFMVTCYTPNS--QA 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R W+ + ++ + + KP+I CGDLNV+H++ID+ +
Sbjct: 112 ELKRLAYRMTWEDAFRAYLNELNQEKPVILCGDLNVAHQKIDLKNW-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GFT ER++F +L G D +R+ + E + + WS + R
Sbjct: 158 -KTNQKNAGFTPEERQKFTELLDSG-FTDTFRYFYPEAEGIYSW-WSYRFNARKNNAGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+VSE L +R+++ ++ + GSDHCPV + L
Sbjct: 215 IDYFVVSESLNERLVSAKIHTDIL------GSDHCPVEVVL 249
>gi|412987602|emb|CCO20437.1| predicted protein [Bathycoccus prasinos]
Length = 411
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 124/257 (48%), Gaps = 37/257 (14%)
Query: 89 FKNYQIWWSLADSKYAGTALLV--KKCFQPKKVS--FSLEKTALKYEPDGRVILAEF--- 141
+ Y +++ K AG LV ++ +P +V F+ E + P GRVI +F
Sbjct: 120 LRKYARYYNCFHQKSAGVLTLVNAEEVEKPNRVRLRFTNEDKGEEEWP-GRVIECQFGDD 178
Query: 142 ---ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC--SGKPLIWCGDLNVSHE 196
+L+TY+PNNG E S +RRR+WD + + + Q G IW GDLNV+ +
Sbjct: 179 EDANRLVVLSTYSPNNGSGAE--SRERRRRWDDSVLKRLTQLRKEGVDFIWNGDLNVAPD 236
Query: 197 EIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKD 256
IDV + A P D+G GFT E++RF IL+ DAYR ++ E+
Sbjct: 237 GIDVKFDDIKAMENKKASDP----DYGVAGFTRNEQRRFQNILEASEASDAYRVVNGERR 292
Query: 257 MDCGFSWSGNPIGKYRGK-------RMRIDYFIVSEELKDRIIAC--------EMQGHGI 301
++W + K GK MR+D +VS+ LK +I C + + +
Sbjct: 293 ---SYTWRAYTVNKVGGKVFNTVNPGMRLDLMVVSKNLKSKIQRCYHATDDLPDTEAMKM 349
Query: 302 ELEGFYGSDHCPVSLEL 318
+E F+GSDHC V LEL
Sbjct: 350 PMEKFFGSDHCAVHLEL 366
>gi|313897464|ref|ZP_07831007.1| exodeoxyribonuclease III [Clostridium sp. HGF2]
gi|312957834|gb|EFR39459.1| exodeoxyribonuclease III [Clostridium sp. HGF2]
Length = 254
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 83/287 (28%), Positives = 140/287 (48%), Gaps = 40/287 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQIL-----MRALSSPPFKNYQIWW 96
++ V+WN N + ++ F +F D DV +Q + +P + YQ
Sbjct: 1 MRLVSWNVNGIRACMQKG---FMDFFKEIDADVFCIQETKMQPGQLEIETPGY--YQYMN 55
Query: 97 SLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 156
S Y+GT + K+ +P V++ L +++ +GRVI E+E FYL+ Y PN+
Sbjct: 56 SAEKKGYSGTMVFSKQ--KPLSVTYGL--GIEEHDHEGRVITCEYEDFYLVCVYTPNS-- 109
Query: 157 KEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 215
K+ R W+ + ++ + + K ++ CGDLNV+H+EID+ +P
Sbjct: 110 KDGLLRLDYRMVWEDAFRAYLHKLNETKSVLVCGDLNVAHKEIDLKNP------------ 157
Query: 216 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 275
K + GFT ER + +L+ G ID++R+L+ +++ + WS + +
Sbjct: 158 ---KTNRRNAGFTDEERGKMSVLLESG-FIDSFRYLYPKQEGIYSW-WSYRFKAREKNAG 212
Query: 276 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEAS 322
RIDYF+VSE+ K+ I + YGSDHCPVSLE + +
Sbjct: 213 WRIDYFLVSEDAKEAIREARIH------TDIYGSDHCPVSLEFDKKA 253
>gi|255974862|ref|ZP_05425448.1| exonuclease III [Enterococcus faecalis T2]
gi|255967734|gb|EET98356.1| exonuclease III [Enterococcus faecalis T2]
Length = 257
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 82/281 (29%), Positives = 134/281 (47%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L VK N F + D D LQ L Y +W+ A
Sbjct: 7 MKCISWNVNGLRAVVKKN---FMDVFNELDADFFCLQETKLQAGQIDLELPGYHQYWNYA 63
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K+ + V + L A ++ +GRVI E+ F+++ Y PN+ +
Sbjct: 64 EKKGYSGTAIFAKE--EALSVRYGLGIEA--HDQEGRVITLEYPEFFMVTCYTPNS--QA 117
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R W+ + ++ + + KP+I CGDLNV+H++ID+ +
Sbjct: 118 ELKRLAYRMTWEDAFRAYLNELNQEKPVILCGDLNVAHQKIDLKNW-------------- 163
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GFT ER++F +L G D +R+ + E + + WS + R
Sbjct: 164 -KTNQKNAGFTPEERQKFTELLDSG-FTDTFRYFYPEAEGIYSW-WSYRFNARKNNAGWR 220
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+VSE L +R+++ ++ + GSDHCPV + L
Sbjct: 221 IDYFVVSESLNERLVSAKIHTDIL------GSDHCPVEVVL 255
>gi|256763359|ref|ZP_05503939.1| exonuclease III [Enterococcus faecalis T3]
gi|256684610|gb|EEU24305.1| exonuclease III [Enterococcus faecalis T3]
Length = 257
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 80/281 (28%), Positives = 132/281 (46%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L VK N F + D D LQ L Y +W+ A
Sbjct: 7 MKCISWNVNGLRAVVKKN---FMDVFNELDADFFCLQETKLQAGQIDLELPGYHQYWNYA 63
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K+ + +E ++ +GRVI E+ F+++ Y PN+ +
Sbjct: 64 EKKGYSGTAIFAKEEALSVRYGLGIES----HDQEGRVITLEYPEFFMVTCYTPNS--QA 117
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R W+ + ++ + + KP+I CGDLNV+H++ID+ +
Sbjct: 118 ELKRLAYRMTWEDAFRAYLNELNQEKPVILCGDLNVAHQKIDLKNW-------------- 163
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GFT ER++F +L G D +R+ + E + + WS + R
Sbjct: 164 -KTNQKNAGFTPEERQKFTELLDSG-FTDTFRYFYPEAEGIYSW-WSYRFNARKNNAGWR 220
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+VSE L +R+++ ++ + GSDHCPV + L
Sbjct: 221 IDYFVVSESLNERLVSAKIHTDIL------GSDHCPVEVVL 255
>gi|346311925|ref|ZP_08853923.1| exodeoxyribonuclease III [Collinsella tanakaei YIT 12063]
gi|345899662|gb|EGX69501.1| exodeoxyribonuclease III [Collinsella tanakaei YIT 12063]
Length = 277
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 88/294 (29%), Positives = 129/294 (43%), Gaps = 47/294 (15%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLAD 100
K +WN N L +K + P F + + D DVIALQ L Y WS A
Sbjct: 11 KLASWNVNGLRAVLKKD-PSFIDIVHQLDADVIALQETKLQEGQVEIDLPGYHQVWSYAQ 69
Query: 101 SK-YAGTALLVKKCFQPKKVSFSLEKTALKYE-----------PDGRVILAEFETFYLLN 148
K Y+GTA+ + +P V + E +GRV EF+ F+ ++
Sbjct: 70 RKGYSGTAVFTR--VEPLSVRHADSLLPFAGEGEAAELLAVAATEGRVCALEFDRFWFVD 127
Query: 149 TYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC---SGKPLIWCGDLNVSHEEIDVSHPEF 205
Y PN + E R WD + F+ +GKP+I CGD NV+H EID+ +P
Sbjct: 128 VYTPNA--QNELARIDTRMAWDDAYRAFLKSLEDETGKPVITCGDFNVAHNEIDLKNP-- 183
Query: 206 FAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WS 264
K + G GF+ ER +F +L G D +R L+ D++ +S WS
Sbjct: 184 -------------KSNRGNAGFSDEERSKFTELLDAG-FTDTWRSLN--PDVEGVYSWWS 227
Query: 265 GNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
+ RIDYF+VS+ + + ++ +GSDHCPV LE+
Sbjct: 228 YRFNARKNNAGWRIDYFLVSDAIASNVRDARIRND------IFGSDHCPVELEI 275
>gi|313232077|emb|CBY09188.1| unnamed protein product [Oikopleura dioica]
Length = 392
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 90/299 (30%), Positives = 149/299 (49%), Gaps = 60/299 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPP------------F 89
+ VTWN L +K + F + T D D++ LQ +L PP +
Sbjct: 131 FRIVTWNVAGLYACIKKD---FCKAVKTLDCDILCLQETKLSLKKPPPAEIAEQLKEWKY 187
Query: 90 KNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNT 149
+NY S + Y+GTA+L K +P V + KT K++ GR AEFE F+L+ +
Sbjct: 188 RNYAN--SEGKAGYSGTAILSKS--KPISVQRGIGKT--KHDDFGRSCTAEFEKFFLVTS 241
Query: 150 YAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAA 208
Y PN+G + N R +W+ ++ ++ + + KP+I+CGDLNV+H ID+ +
Sbjct: 242 YVPNSG-RGLVNLDYRTNEWESDLRNYLTKLNKDKPVIYCGDLNVAHTAIDLKN------ 294
Query: 209 AKLNGYVPPNKEDWGQ-PGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNP 267
+K ++ + G+T AE +L+ G +DAYR L+ ++ DC WS
Sbjct: 295 ---------DKSNYNKSAGYTQAEIDELEKLLELG-YVDAYRKLYPAEE-DCYTFWSY-- 341
Query: 268 IGKYRGKRM--RIDYFIV-----SEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
+G R K + R+DYF++ E ++D ++ ++Q GSDHCPV ++L+
Sbjct: 342 MGGARSKNVGWRLDYFLMKIKDCEEWIEDVVVHSKVQ----------GSDHCPVEIKLN 390
>gi|229549148|ref|ZP_04437873.1| exodeoxyribonuclease [Enterococcus faecalis ATCC 29200]
gi|256957962|ref|ZP_05562133.1| exonuclease III [Enterococcus faecalis DS5]
gi|257084299|ref|ZP_05578660.1| exonuclease III [Enterococcus faecalis Fly1]
gi|257090921|ref|ZP_05585282.1| exonuclease III [Enterococcus faecalis CH188]
gi|307276972|ref|ZP_07558082.1| exodeoxyribonuclease III [Enterococcus faecalis TX2134]
gi|312902560|ref|ZP_07761766.1| exodeoxyribonuclease III [Enterococcus faecalis TX0635]
gi|312951910|ref|ZP_07770798.1| exodeoxyribonuclease III [Enterococcus faecalis TX0102]
gi|384519525|ref|YP_005706830.1| exodeoxyribonuclease III [Enterococcus faecalis 62]
gi|421513270|ref|ZP_15960049.1| Exodeoxyribonuclease III [Enterococcus faecalis ATCC 29212]
gi|422687253|ref|ZP_16745435.1| exodeoxyribonuclease III [Enterococcus faecalis TX0630]
gi|422690983|ref|ZP_16749024.1| exodeoxyribonuclease III [Enterococcus faecalis TX0031]
gi|422710887|ref|ZP_16767822.1| exodeoxyribonuclease III [Enterococcus faecalis TX0027]
gi|422725430|ref|ZP_16781891.1| exodeoxyribonuclease III [Enterococcus faecalis TX0312]
gi|229305702|gb|EEN71698.1| exodeoxyribonuclease [Enterococcus faecalis ATCC 29200]
gi|256948458|gb|EEU65090.1| exonuclease III [Enterococcus faecalis DS5]
gi|256992329|gb|EEU79631.1| exonuclease III [Enterococcus faecalis Fly1]
gi|256999733|gb|EEU86253.1| exonuclease III [Enterococcus faecalis CH188]
gi|306506395|gb|EFM75555.1| exodeoxyribonuclease III [Enterococcus faecalis TX2134]
gi|310630099|gb|EFQ13382.1| exodeoxyribonuclease III [Enterococcus faecalis TX0102]
gi|310634230|gb|EFQ17513.1| exodeoxyribonuclease III [Enterococcus faecalis TX0635]
gi|315035107|gb|EFT47039.1| exodeoxyribonuclease III [Enterococcus faecalis TX0027]
gi|315154300|gb|EFT98316.1| exodeoxyribonuclease III [Enterococcus faecalis TX0031]
gi|315159607|gb|EFU03624.1| exodeoxyribonuclease III [Enterococcus faecalis TX0312]
gi|315579630|gb|EFU91821.1| exodeoxyribonuclease III [Enterococcus faecalis TX0630]
gi|323481658|gb|ADX81097.1| exodeoxyribonuclease III [Enterococcus faecalis 62]
gi|401673644|gb|EJS80023.1| Exodeoxyribonuclease III [Enterococcus faecalis ATCC 29212]
Length = 251
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/281 (29%), Positives = 133/281 (47%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L VK N F + D D LQ L Y +W+ A
Sbjct: 1 MKCISWNVNGLRAVVKKN---FMDVFNELDADFFCLQETKLQAGQIDLELPGYHQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K+ + V + L A ++ +GRVI E+ F+++ Y PN+ +
Sbjct: 58 EKKGYSGTAIFAKE--EALSVRYGLGIEA--HDQEGRVITLEYPEFFMVTCYTPNS--QA 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R W+ + ++ + + KP+I CGDLNV+H+ ID+ +
Sbjct: 112 ELKRLAYRMTWEDAFRAYLNELNQEKPVILCGDLNVAHQNIDLKNW-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GFT ER++F +L G D +R+ + E + + WS + R
Sbjct: 158 -KTNQKNAGFTPEERQKFTELLDSG-FTDTFRYFYPEAEGIYSW-WSYRFNARKNNAGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+VSE L +R+++ ++ + GSDHCPV + L
Sbjct: 215 IDYFVVSESLNERLVSAKIHTDIL------GSDHCPVEVVL 249
>gi|255971866|ref|ZP_05422452.1| exonuclease III [Enterococcus faecalis T1]
gi|255962884|gb|EET95360.1| exonuclease III [Enterococcus faecalis T1]
Length = 257
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/281 (29%), Positives = 133/281 (47%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L VK N F + D D LQ L Y +W+ A
Sbjct: 7 MKCISWNVNGLRAVVKKN---FMDVFNELDADFFCLQETKLQAGQIDLELPGYHQYWNYA 63
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K+ + V + L A ++ +GRVI E+ F+++ Y PN+ +
Sbjct: 64 EKKGYSGTAIFAKE--EALSVRYGLGIEA--HDQEGRVITLEYPEFFMVTCYTPNS--QA 117
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R W+ + ++ + + KP+I CGDLNV+H+ ID+ +
Sbjct: 118 ELKRLAYRMTWEDAFRAYLNELNQEKPVILCGDLNVAHQNIDLKNW-------------- 163
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GFT ER++F +L G D +R+ + E + + WS + R
Sbjct: 164 -KTNQKNAGFTPEERQKFTELLDSG-FTDTFRYFYPEAEGIYSW-WSYRFNARKNNAGWR 220
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+VSE L +R+++ ++ + GSDHCPV + L
Sbjct: 221 IDYFVVSESLNERLVSAKIHTDIL------GSDHCPVEVVL 255
>gi|422694022|ref|ZP_16752027.1| exodeoxyribonuclease III [Enterococcus faecalis TX4244]
gi|315148697|gb|EFT92713.1| exodeoxyribonuclease III [Enterococcus faecalis TX4244]
Length = 251
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 80/281 (28%), Positives = 132/281 (46%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L VK N F + D D LQ L Y +W+ A
Sbjct: 1 MKCISWNVNGLRAVVKKN---FMDVFNELDADFFCLQETKLQAGQIDLELPGYHQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K+ + +E ++ +GRVI E+ F+++ Y PN+ +
Sbjct: 58 EKKGYSGTAIFAKEEALSVRYGLGIES----HDQEGRVITLEYPEFFMVTCYTPNS--QA 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R W+ + ++ + + KP+I CGDLNV+H++ID+ +
Sbjct: 112 ELKRLAYRMTWEDAFRAYLNELNQEKPVILCGDLNVAHQKIDLKNW-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GFT ER++F +L G D +R+ + E + + WS + R
Sbjct: 158 -KTNQKNAGFTPEERQKFTELLDSG-FTDTFRYFYPEAEGIYSW-WSYRFNARKNNAGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+VSE L +R+++ ++ + GSDHCPV + L
Sbjct: 215 IDYFVVSESLNERLVSAKIHTDIL------GSDHCPVEVVL 249
>gi|385826522|ref|YP_005862864.1| exodeoxyribonuclease A [Lactobacillus johnsonii DPC 6026]
gi|329667966|gb|AEB93914.1| exodeoxyribonuclease A [Lactobacillus johnsonii DPC 6026]
Length = 260
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 81/283 (28%), Positives = 138/283 (48%), Gaps = 40/283 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPFK--NYQIWWSLA 99
+KF++WN N L +++ F N T D D+ +Q + Y +W+ A
Sbjct: 7 MKFMSWNVNGLRAALRHG---FVNTFTDLDADIFGIQDTRVEPNEVKIDLPGYYQYWNYA 63
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K YAGTA+ K+ K ++ + + + +GR I EF FY +N P +G K
Sbjct: 64 ERKGYAGTAVFTKE----KPITVANGFGVPEVDGEGRSITLEFSNFYFINVQVPFSGEKL 119
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ F R W + + +V + KP+I GD++V+HE ID++ P+
Sbjct: 120 QRLDF--RELWAQIFRNYVTKLMQYKPVIIGGDMSVAHERIDLAEPD------------- 164
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
++ +PGFT ERK F +L G ID +R+ H ++ +S+ + R + +
Sbjct: 165 --DNHHRPGFTGIERKEFSELLNAG-FIDTFRYFHPDEAKYTYWSYRDK---EARAENLG 218
Query: 277 -RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
R+DYF+VS L+D++ ++ L GSDHCP+ L++
Sbjct: 219 WRLDYFLVSNNLEDKLTNAKI------LNNIMGSDHCPIELDV 255
>gi|256854033|ref|ZP_05559398.1| exodeoxyribonuclease [Enterococcus faecalis T8]
gi|307290261|ref|ZP_07570177.1| exodeoxyribonuclease III [Enterococcus faecalis TX0411]
gi|422684833|ref|ZP_16743058.1| exodeoxyribonuclease III [Enterococcus faecalis TX4000]
gi|256710976|gb|EEU26019.1| exodeoxyribonuclease [Enterococcus faecalis T8]
gi|306498682|gb|EFM68183.1| exodeoxyribonuclease III [Enterococcus faecalis TX0411]
gi|315030444|gb|EFT42376.1| exodeoxyribonuclease III [Enterococcus faecalis TX4000]
Length = 251
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 80/281 (28%), Positives = 131/281 (46%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L VK N F + D D LQ L Y +W+ A
Sbjct: 1 MKCISWNVNGLRAVVKKN---FMDVFNELDADFFCLQETKLQAGQIDLELPGYHQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K+ + +E ++ +GRVI E+ F+++ Y PN+ +
Sbjct: 58 EKKGYSGTAIFAKEEALSVRYGLGIET----HDQEGRVITLEYPEFFMVTCYTPNS--QA 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R W+ + ++ + + KP+I CGDLNV+H+ ID+ +
Sbjct: 112 ELKRLAYRMTWEDAFRAYLNELNQEKPVILCGDLNVAHQNIDLKNW-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GFT ER++F +L G D +R+ + E + + WS + R
Sbjct: 158 -KTNQKNAGFTPEERQKFTELLDSG-FTDTFRYFYPEAEGIYSW-WSYRFNARKNNAGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+VSE L +R+++ ++ + GSDHCPV + L
Sbjct: 215 IDYFVVSESLNERLVSAKIHTDIL------GSDHCPVEVVL 249
>gi|385840954|ref|YP_005864278.1| Exodeoxyribonuclease III [Lactobacillus salivarius CECT 5713]
gi|417787595|ref|ZP_12435278.1| exodeoxyribonuclease III [Lactobacillus salivarius NIAS840]
gi|417809656|ref|ZP_12456337.1| Exodeoxyribonuclease III [Lactobacillus salivarius GJ-24]
gi|418960898|ref|ZP_13512785.1| exodeoxyribonuclease III [Lactobacillus salivarius SMXD51]
gi|300215075|gb|ADJ79491.1| Exodeoxyribonuclease III [Lactobacillus salivarius CECT 5713]
gi|334307772|gb|EGL98758.1| exodeoxyribonuclease III [Lactobacillus salivarius NIAS840]
gi|335350580|gb|EGM52076.1| Exodeoxyribonuclease III [Lactobacillus salivarius GJ-24]
gi|380344565|gb|EIA32911.1| exodeoxyribonuclease III [Lactobacillus salivarius SMXD51]
Length = 275
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 84/302 (27%), Positives = 135/302 (44%), Gaps = 52/302 (17%)
Query: 42 LKFVTWNANSL-------LLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPP------ 88
+K ++WN +SL R K + + I +PD+IA+Q + + P
Sbjct: 1 MKLISWNIDSLNAALTSDSARAKQSREVLATIIDE-NPDIIAIQETKLSATGPTKKHQTI 59
Query: 89 ----FKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAE 140
F +Y+I W A YAGT L K P +S+ + +GR+I E
Sbjct: 60 LAEQFPDYEIAWRSSQEPARKGYAGTMFLYKNNLNPT-ISYPEIDAPEPMDSEGRIITLE 118
Query: 141 FETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEID 199
F+ FY+ Y PN G + R+ WD++ ++++ KPL+ GD NV+H+EID
Sbjct: 119 FDNFYVTQVYTPNAG--DGLRRLAERQVWDEKYADYLVSLDQNKPLLSSGDFNVAHKEID 176
Query: 200 VSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDC 259
++HP + GFT ER F +L +G D +R++H D+
Sbjct: 177 LAHP---------------GNNHHSAGFTDEERAGFTNLLNKG-FTDTFRYVH--GDVKD 218
Query: 260 GFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLE 317
+SW + K RIDY++ S + D+I+ EM L+ DH P+ LE
Sbjct: 219 VYSWWAQRSRTSKINNSGWRIDYWLASNRIADKIVRSEM------LDSGERRDHTPIVLE 272
Query: 318 LS 319
++
Sbjct: 273 IN 274
>gi|395244636|ref|ZP_10421596.1| Exodeoxyribonuclease III [Lactobacillus hominis CRBIP 24.179]
gi|394483087|emb|CCI82604.1| Exodeoxyribonuclease III [Lactobacillus hominis CRBIP 24.179]
Length = 275
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 89/302 (29%), Positives = 136/302 (45%), Gaps = 54/302 (17%)
Query: 42 LKFVTWNANSL---LLRVKNNWPEFSNFITTF---DPDVIALQ-ILMRALSSPPFKNYQ- 93
++ ++WN +SL L N E + DPDVIA+Q +RA + P K +Q
Sbjct: 1 MRLISWNIDSLNAALTSDSNRAQETRQVLAAIKEKDPDVIAIQETKLRA--TGPTKKHQE 58
Query: 94 -----------IWWSL---ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILA 139
+W S A YAGT L K + PK V++ + +GR+I
Sbjct: 59 KLAEFFPEYSYVWRSSQEPARKGYAGTMFLYKNTYDPK-VTYPKIDAPEPMDDEGRIITL 117
Query: 140 EFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEI 198
EF+ Y+ Y PN+G E R+ WD++ + ++ + KP+I GD NV+H I
Sbjct: 118 EFDNCYVSQVYTPNSG--NELRRLDDRQIWDEKYRLYLQELDKNKPVIASGDYNVAHTPI 175
Query: 199 DVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMD 258
D+ HP+ + GFT ER+ F A+L G D +R +H +++
Sbjct: 176 DLKHPQ---------------NNHHNAGFTDEERRDFTALLDTG-FTDTFRKVH--GNIE 217
Query: 259 CGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
+SW + K RIDY+IVS + D++ EM G DHCP+ L
Sbjct: 218 GVYSWWAQRVRTSKQNNSGWRIDYYIVSNRIADKVTKSEMIDTGDR------KDHCPLIL 271
Query: 317 EL 318
E+
Sbjct: 272 EI 273
>gi|154688190|ref|YP_001423351.1| ExoA [Bacillus amyloliquefaciens FZB42]
gi|154354041|gb|ABS76120.1| ExoA [Bacillus amyloliquefaciens FZB42]
Length = 252
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 84/283 (29%), Positives = 138/283 (48%), Gaps = 39/283 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ---ILMRALSSPPFKNYQIWWSL 98
+K ++WN N L +K + + ++ D++ LQ + +S P + Y +W+
Sbjct: 1 MKLISWNVNGLRAVMKK--IDINTYVQETAADILCLQETKVQDGQVSLQP-EGYHAYWNY 57
Query: 99 ADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWK 157
A K Y+GTA+ K+ +P V + L ++ +GRVI EFE +++N Y PN K
Sbjct: 58 AVKKGYSGTAVFSKE--KPLHVLYGLGID--DHDQEGRVITLEFEHVFVVNCYTPNA--K 111
Query: 158 EEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVP 216
R +W+ ++++ + KP+I CGDLNV+H EID+ +P
Sbjct: 112 RGLERIDYRLQWEADFKDYLQKLDRKKPVILCGDLNVAHREIDLKNP------------- 158
Query: 217 PNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKR 275
K + GF+ ER+ F A+L G D++R+L+ D + +S WS + +
Sbjct: 159 --KANRKNAGFSEQEREAFSALLNAG-FTDSFRYLY--PDQEGAYSWWSYRTNAREKNIG 213
Query: 276 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
R+DY IVS+ LK RI + GSDHCPV + +
Sbjct: 214 WRLDYVIVSDRLKQRISQAAI------CADIMGSDHCPVEMTV 250
>gi|418007606|ref|ZP_12647486.1| exodeoxyribonuclease III [Lactobacillus casei UW4]
gi|410548624|gb|EKQ22818.1| exodeoxyribonuclease III [Lactobacillus casei UW4]
Length = 252
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 88/283 (31%), Positives = 132/283 (46%), Gaps = 45/283 (15%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ-ILMRA----LSSPPFKNYQIWW 96
+K ++WN N L +K +F D D LQ M+A L P + Y +
Sbjct: 1 MKLISWNVNGLRAVLKK---DFMTIFNELDADWFCLQETKMQAGQVELDLPGYHQY---F 54
Query: 97 SLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNG 155
+ A+ K Y+GTA+ K +P V++ + +++ +GR+I E+ FYL+ Y PN+G
Sbjct: 55 NYAERKGYSGTAIFTKH--EPLNVTYGM--GVPEHDTEGRIITLEYPNFYLMTVYTPNSG 110
Query: 156 WKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY 214
E R++WDK + Q + K PL++CGDLNV+H+EID+ +
Sbjct: 111 --GELKRLDYRQQWDKDFLAYTNQLAAKKPLVYCGDLNVAHQEIDLKN------------ 156
Query: 215 VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRG 273
+K + GFT ER F L G ID +R L+ + +S WS +
Sbjct: 157 ---DKTNHHNAGFTDEERADFTKQLDSG-FIDTFRNLYPDT---VTYSWWSYRFHARANN 209
Query: 274 KRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
RIDYF+ S K I ++ L GSDHCPV L
Sbjct: 210 AGWRIDYFVSSRNFKPYIQDAKI------LTDIMGSDHCPVEL 246
>gi|332522573|ref|ZP_08398825.1| exodeoxyribonuclease III [Streptococcus porcinus str. Jelinkova
176]
gi|332313837|gb|EGJ26822.1| exodeoxyribonuclease III [Streptococcus porcinus str. Jelinkova
176]
Length = 275
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 85/300 (28%), Positives = 136/300 (45%), Gaps = 50/300 (16%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQILMRALSSPP------- 88
+K ++WN +SL + P + + + D D+IA+Q + + P
Sbjct: 1 MKLISWNIDSLNAALTGESPRALLSRAVIDRLVSEDADIIAIQETKLSATGPTKKHLESI 60
Query: 89 ---FKNY-QIWWSL---ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEF 141
F NY +W S A YAGT L K+ P V+F + +GR+I EF
Sbjct: 61 LNYFPNYLHVWRSSVEPARKGYAGTMFLYKQTLNPV-VTFPEIGAPTTMDSEGRIITLEF 119
Query: 142 ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDV 200
+ F++ Y PN G + R++WD + E++ Q KP++ GD NV+H+EID+
Sbjct: 120 DDFFVTQVYTPNAG--DGLRRLADRQEWDIKYAEYLAQLDAQKPVLATGDYNVAHKEIDL 177
Query: 201 SHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCG 260
++P N+ PGFT ER F A+L++G D +R LH D+
Sbjct: 178 ANPA------------SNRR---SPGFTDEERAGFTALLEKG-FTDTFRHLH--GDIPNV 219
Query: 261 FSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
++W + K RIDY++ S + D+++ EM G DH P+ LE+
Sbjct: 220 YTWWAQRSKTSKMNNTGWRIDYWLTSNRVADKVLKSEMLDSGAR------QDHTPILLEI 273
>gi|374315128|ref|YP_005061556.1| exodeoxyribonuclease III [Sphaerochaeta pleomorpha str. Grapes]
gi|359350772|gb|AEV28546.1| exodeoxyribonuclease III [Sphaerochaeta pleomorpha str. Grapes]
Length = 271
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 88/292 (30%), Positives = 138/292 (47%), Gaps = 57/292 (19%)
Query: 41 PLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--------ILMRALSSPPFKNY 92
P+K ++WN N L K F +++ D D+ LQ I + LS Y
Sbjct: 22 PVKLISWNVNGLRACQKKG---FEEYLSRADADIFCLQETKLQEDQIALDKLS------Y 72
Query: 93 QIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYA 151
+WS A+ K Y+GTAL K QP VS + + +GR + AEFE ++++ Y
Sbjct: 73 HTFWSFAEKKGYSGTALFSK--IQPISVS---REIGHPLDSEGRTVTAEFEDYFVICCYT 127
Query: 152 PNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAK 210
PN+ +E+ + R WD +++V K P++ CGDLNV+H ID+ +P
Sbjct: 128 PNS--QEKLARIELRMDWDAAFRKYVSDLDKKKPVLICGDLNVAHNPIDLKNP------- 178
Query: 211 LNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGK 270
K++ G++I ER+ F +L G D++R+L+ +K D WS +
Sbjct: 179 --------KQNEQNAGYSIQERQGFSTLLASG-FTDSFRYLYPDK-TDAYSWWSYRFHAR 228
Query: 271 YRGKRMRIDYFIVS----EELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
+ RIDY++ S + +KD II ++ GSDH PV L L
Sbjct: 229 EKNIGWRIDYWLASKRFEQHIKDSIIEDQV----------LGSDHAPVVLVL 270
>gi|256616763|ref|ZP_05473609.1| exonuclease III [Enterococcus faecalis ATCC 4200]
gi|256596290|gb|EEU15466.1| exonuclease III [Enterococcus faecalis ATCC 4200]
Length = 251
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/281 (29%), Positives = 134/281 (47%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L VK N F + D D LQ L Y +W+ A
Sbjct: 1 MKCISWNINGLRAVVKKN---FMDVFNELDADFFCLQETKLQAGQIDLELPGYHQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K+ + V + L A ++ +GRVI E+ F+++ Y PN+ +
Sbjct: 58 EKKGYSGTAIFAKE--EALSVRYGLGIEA--HDQEGRVITLEYPEFFMVTCYTPNS--QA 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R W+ + ++ + + KP+I CGDLNV+H++ID+ +
Sbjct: 112 ELKRLAYRMTWEDAFRAYLNELNQEKPVILCGDLNVAHQKIDLKNW-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GFT ER++F +L G D +R+ + E + + WS + R
Sbjct: 158 -KTNQKNAGFTPEERQKFTELLDSG-FTDTFRYFYPEAEGIYSW-WSYRFNARKNNAGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+VSE L +R+++ ++ + GSDHCPV + L
Sbjct: 215 IDYFVVSESLNERLVSAKIHTDIL------GSDHCPVEVVL 249
>gi|409082189|gb|EKM82547.1| hypothetical protein AGABI1DRAFT_111155 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 326
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 85/295 (28%), Positives = 140/295 (47%), Gaps = 48/295 (16%)
Query: 40 DPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIAL-------QILMRALSSPPFKNY 92
D L+ TWN K F ++ D D++ L Q + AL + +
Sbjct: 58 DTLRIATWNICGWAASHKKG---FKYYVEAEDADILVLTETKVNEQPVDPALDA---RYP 111
Query: 93 QIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYA 151
+WS++ K Y+GTA+L K +P V+ +L GR+I EFE +YL+ TY
Sbjct: 112 YTYWSISSKKSYSGTAILSK--HKPLSVTKTLPNHPNPDLVKGRIITLEFEGYYLIGTYV 169
Query: 152 PNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAK 210
N G E + + +++W++ + ++ KP+IW GDLNV+ ID+++
Sbjct: 170 VNAG--VELKTLEDKKEWNQHFENYIRDLDKVKPVIWTGDLNVAPTAIDLAN-------- 219
Query: 211 LNGYVPPNKEDWGQ-PGFTIAERKRFGAIL------KEGRLIDAYRFLHKEKDMDCGFSW 263
K +W + PG+T AE F IL G+ +D +R LH + FS+
Sbjct: 220 -------AKRNWNKTPGYTEAETSSFKNILDPPEDVDAGKFVDVWRQLHPKDQHYTYFSY 272
Query: 264 SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
N + +G R+D F++SE + +R+ CE++ E + SDHCPV +E+
Sbjct: 273 RFN--CRLKGLGWRLDMFVLSERIAERVKMCEIRS-----EIYGASDHCPVVVEV 320
>gi|426200016|gb|EKV49940.1| hypothetical protein AGABI2DRAFT_190373 [Agaricus bisporus var.
bisporus H97]
Length = 326
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 85/295 (28%), Positives = 140/295 (47%), Gaps = 48/295 (16%)
Query: 40 DPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIAL-------QILMRALSSPPFKNY 92
D L+ TWN K F ++ D D++ L Q + AL + +
Sbjct: 58 DTLRIATWNICGWAASHKKG---FKYYVEAEDADILVLTETKVNEQPVDPALDA---RYP 111
Query: 93 QIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYA 151
+WS++ K Y+GTA+L K +P V+ +L GR+I EFE +YL+ TY
Sbjct: 112 YTYWSISSKKSYSGTAILSK--HKPLSVTKTLPNHPNPDLVKGRIITLEFEGYYLIGTYV 169
Query: 152 PNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAK 210
N G E + + +++W++ + ++ KP+IW GDLNV+ ID+++
Sbjct: 170 VNAG--VELKTLEDKKEWNQHFENYIRDLDKVKPVIWTGDLNVAPTAIDLAN-------- 219
Query: 211 LNGYVPPNKEDWGQ-PGFTIAERKRFGAIL------KEGRLIDAYRFLHKEKDMDCGFSW 263
K +W + PG+T AE F IL G+ +D +R LH + FS+
Sbjct: 220 -------AKRNWNKTPGYTEAETTSFKNILDPPEDVDAGKFVDVWRQLHPKDQHYTYFSY 272
Query: 264 SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
N + +G R+D F++SE + +R+ CE++ E + SDHCPV +E+
Sbjct: 273 RFN--CRLKGLGWRLDMFVLSERIAERVKMCEIRS-----EIYGASDHCPVVVEV 320
>gi|300860584|ref|ZP_07106671.1| exodeoxyribonuclease III [Enterococcus faecalis TUSoD Ef11]
gi|428767881|ref|YP_007153992.1| exodeoxyribonuclease III [Enterococcus faecalis str. Symbioflor 1]
gi|300849623|gb|EFK77373.1| exodeoxyribonuclease III [Enterococcus faecalis TUSoD Ef11]
gi|427186054|emb|CCO73278.1| exodeoxyribonuclease III [Enterococcus faecalis str. Symbioflor 1]
Length = 251
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/281 (29%), Positives = 133/281 (47%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L VK N F + D D LQ L Y +W+ A
Sbjct: 1 MKCISWNVNGLRAVVKKN---FLDVFNELDADFFCLQETKLQAGQIDLELPGYHQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K+ + V + L A ++ +GRVI E+ F+++ Y PN+ +
Sbjct: 58 EKKGYSGTAIFAKE--EALSVRYGLGIEA--HDQEGRVITLEYPEFFMVTCYTPNS--QA 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R W+ + ++ + + KP+I CGDLNV+H+ ID+ +
Sbjct: 112 ELKRLAYRMTWEDAFRAYLNELNQEKPVILCGDLNVAHQNIDLKNW-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GFT ER++F +L G D +R+ + E + + WS + R
Sbjct: 158 -KTNQKNAGFTPEERQKFTELLDSG-FTDTFRYFYPEAEGIYSW-WSYRFNARKNNAGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+VSE L +R+++ ++ + GSDHCPV + L
Sbjct: 215 IDYFVVSESLNERLVSAKIHTDIL------GSDHCPVEVVL 249
>gi|394994125|ref|ZP_10386855.1| ExoA [Bacillus sp. 916]
gi|393805011|gb|EJD66400.1| ExoA [Bacillus sp. 916]
Length = 252
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 84/283 (29%), Positives = 139/283 (49%), Gaps = 39/283 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ---ILMRALSSPPFKNYQIWWSL 98
+K ++WN N L +K + + ++ + D++ LQ + +S P + Y +W+
Sbjct: 1 MKLMSWNVNGLRAVMKK--IDINTYVQETEADILCLQETKVQDGQVSLQP-EGYHAYWNY 57
Query: 99 ADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWK 157
A K Y+GTA+ K+ +P V + L ++ +GRVI EFE +++N Y PN K
Sbjct: 58 AVKKGYSGTAVFSKE--KPLHVLYGLGID--DHDQEGRVITLEFEHVFVVNCYTPNA--K 111
Query: 158 EEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVP 216
R +W+ ++++ + KP+I CGDLNV+H EID+ +P
Sbjct: 112 RGLERIDYRLQWEADFKDYLQKLDRKKPVILCGDLNVAHREIDLKNP------------- 158
Query: 217 PNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKR 275
K + GF+ ER+ F A+L G D++R+L+ D + +S WS + +
Sbjct: 159 --KANRKNAGFSEQEREAFSALLNAG-FTDSFRYLY--PDREGAYSWWSYRTNAREKNIG 213
Query: 276 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
R+DY IVS+ LK RI + GSDHCPV + +
Sbjct: 214 WRLDYVIVSDRLKQRISQAAI------CADIMGSDHCPVEMTV 250
>gi|385267001|ref|ZP_10045088.1| ExoA [Bacillus sp. 5B6]
gi|385151497|gb|EIF15434.1| ExoA [Bacillus sp. 5B6]
Length = 252
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/282 (29%), Positives = 138/282 (48%), Gaps = 37/282 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ---ILMRALSSPPFKNYQIWWSL 98
+K ++WN N L +K + + ++ + D++ LQ + +S P + Y +W+
Sbjct: 1 MKLISWNVNGLRAVMKK--IDINTYVQETEADILCLQETKVQDGQVSLQP-EGYHAYWNY 57
Query: 99 ADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWK 157
A K Y+GTA+ K+ +P V + L ++ +GRVI EFE +++N Y PN K
Sbjct: 58 AVKKGYSGTAVFSKE--KPLHVFYGLGID--DHDQEGRVITLEFENVFVVNCYTPNA--K 111
Query: 158 EEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVP 216
R +W+ ++++ + KP+I CGDLNV+H EID+ +P
Sbjct: 112 RGLERIDYRLQWEADFKDYLQKLDRKKPVILCGDLNVAHREIDLKNP------------- 158
Query: 217 PNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM 276
K + GF+ ER+ F A+L G D +R+L+ +++ + WS + +
Sbjct: 159 --KANRKNAGFSEQEREAFSALLNAG-FTDTFRYLYPDREGAYSW-WSYRTNAREKNIGW 214
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
R+DY IVS+ LK RI + GSDHCPV + +
Sbjct: 215 RLDYVIVSDRLKPRINQAAI------CADIMGSDHCPVEMTV 250
>gi|218281326|ref|ZP_03487814.1| hypothetical protein EUBIFOR_00379 [Eubacterium biforme DSM 3989]
gi|218217511|gb|EEC91049.1| hypothetical protein EUBIFOR_00379 [Eubacterium biforme DSM 3989]
Length = 249
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 83/285 (29%), Positives = 133/285 (46%), Gaps = 46/285 (16%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPP-------FKNYQI 94
+K ++WN N + +K +F + D D+ +Q + P YQ
Sbjct: 1 MKCISWNVNGIRAVLKK---DFVEILYALDADIFCIQ---ETKAQPDQIEVDCELYPYQY 54
Query: 95 WWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNN 154
S Y+GT + K+ +P + + + +++ +GRVI E+ +Y++ Y PN+
Sbjct: 55 INSAQKKGYSGTMIFCKE--EPLSIRYGMNME--EHDTEGRVITLEYPEYYVVTVYTPNS 110
Query: 155 GWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY 214
G + R +WDK + L+ KP++ CGD NV++EEID+ +P
Sbjct: 111 G--DGLKRLDYRMEWDKAFSAY-LKSLDKPVMACGDFNVANEEIDIKNP----------- 156
Query: 215 VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRG 273
K + GFT ER F L +D YR L+ EK +S WS + +
Sbjct: 157 ----KTNHKNAGFTDEERNSFKENLL-AYFVDTYRSLYPEK---VEYSWWSYRFKAREKN 208
Query: 274 KRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDY++VS ELKD+I+ ++ L YGSDHCPV L++
Sbjct: 209 AGWRIDYWLVSPELKDKIVDAKI------LTDIYGSDHCPVQLDI 247
>gi|227519480|ref|ZP_03949529.1| exodeoxyribonuclease [Enterococcus faecalis TX0104]
gi|422727704|ref|ZP_16784135.1| exodeoxyribonuclease III [Enterococcus faecalis TX0012]
gi|424677217|ref|ZP_18114076.1| exodeoxyribonuclease III [Enterococcus faecalis ERV103]
gi|424679202|ref|ZP_18116030.1| exodeoxyribonuclease III [Enterococcus faecalis ERV116]
gi|424682483|ref|ZP_18119253.1| exodeoxyribonuclease III [Enterococcus faecalis ERV129]
gi|424686042|ref|ZP_18122715.1| exodeoxyribonuclease III [Enterococcus faecalis ERV25]
gi|424689047|ref|ZP_18125641.1| exodeoxyribonuclease III [Enterococcus faecalis ERV31]
gi|424692659|ref|ZP_18129142.1| exodeoxyribonuclease III [Enterococcus faecalis ERV37]
gi|424695850|ref|ZP_18132222.1| exodeoxyribonuclease III [Enterococcus faecalis ERV41]
gi|424699041|ref|ZP_18135281.1| exodeoxyribonuclease III [Enterococcus faecalis ERV62]
gi|424702698|ref|ZP_18138845.1| exodeoxyribonuclease III [Enterococcus faecalis ERV63]
gi|424705840|ref|ZP_18141862.1| exodeoxyribonuclease III [Enterococcus faecalis ERV65]
gi|424716100|ref|ZP_18145417.1| exodeoxyribonuclease III [Enterococcus faecalis ERV68]
gi|424719240|ref|ZP_18148416.1| exodeoxyribonuclease III [Enterococcus faecalis ERV72]
gi|424724426|ref|ZP_18153372.1| exodeoxyribonuclease III [Enterococcus faecalis ERV73]
gi|424726233|ref|ZP_18154907.1| exodeoxyribonuclease III [Enterococcus faecalis ERV81]
gi|424734642|ref|ZP_18163137.1| exodeoxyribonuclease III [Enterococcus faecalis ERV85]
gi|424746779|ref|ZP_18175000.1| exodeoxyribonuclease III [Enterococcus faecalis ERV93]
gi|227073092|gb|EEI11055.1| exodeoxyribonuclease [Enterococcus faecalis TX0104]
gi|315151770|gb|EFT95786.1| exodeoxyribonuclease III [Enterococcus faecalis TX0012]
gi|402355247|gb|EJU90024.1| exodeoxyribonuclease III [Enterococcus faecalis ERV103]
gi|402357580|gb|EJU92285.1| exodeoxyribonuclease III [Enterococcus faecalis ERV116]
gi|402367516|gb|EJV01856.1| exodeoxyribonuclease III [Enterococcus faecalis ERV129]
gi|402368116|gb|EJV02441.1| exodeoxyribonuclease III [Enterococcus faecalis ERV25]
gi|402369475|gb|EJV03753.1| exodeoxyribonuclease III [Enterococcus faecalis ERV31]
gi|402377670|gb|EJV11567.1| exodeoxyribonuclease III [Enterococcus faecalis ERV37]
gi|402377770|gb|EJV11662.1| exodeoxyribonuclease III [Enterococcus faecalis ERV62]
gi|402379084|gb|EJV12904.1| exodeoxyribonuclease III [Enterococcus faecalis ERV41]
gi|402386727|gb|EJV20225.1| exodeoxyribonuclease III [Enterococcus faecalis ERV63]
gi|402388863|gb|EJV22288.1| exodeoxyribonuclease III [Enterococcus faecalis ERV68]
gi|402389270|gb|EJV22670.1| exodeoxyribonuclease III [Enterococcus faecalis ERV65]
gi|402395163|gb|EJV28284.1| exodeoxyribonuclease III [Enterococcus faecalis ERV73]
gi|402396815|gb|EJV29860.1| exodeoxyribonuclease III [Enterococcus faecalis ERV72]
gi|402400257|gb|EJV33096.1| exodeoxyribonuclease III [Enterococcus faecalis ERV81]
gi|402406913|gb|EJV39456.1| exodeoxyribonuclease III [Enterococcus faecalis ERV85]
gi|402409191|gb|EJV41626.1| exodeoxyribonuclease III [Enterococcus faecalis ERV93]
Length = 251
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/281 (29%), Positives = 132/281 (46%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L VK N F + D D LQ L Y +W+ A
Sbjct: 1 MKCISWNVNGLRAVVKKN---FMDVFNELDADFFCLQETKLQAGQIDLELPGYHQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K+ + V + L A ++ +GRVI E+ F+++ Y PN+ +
Sbjct: 58 EKKGYSGTAIFAKE--EALSVRYGLGIEA--HDQEGRVITLEYPEFFIVTCYTPNS--QA 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R W+ ++ + + KP+I CGDLNV+H+ ID+ +
Sbjct: 112 ELKRLAYRMTWEDAFSAYLNELNQEKPVILCGDLNVAHQNIDLKNW-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GFT ER++F +L G D +R+ + E + + WS + R
Sbjct: 158 -KTNQKNAGFTPEERQKFTELLDSG-FTDTFRYFYPEAEGIYSW-WSYRFNARKNNAGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+VSE L +R+++ ++ + GSDHCPV + L
Sbjct: 215 IDYFVVSESLNERLVSAKIHTDIL------GSDHCPVEVVL 249
>gi|260881707|ref|ZP_05405068.2| exodeoxyribonuclease III [Mitsuokella multacida DSM 20544]
gi|260848221|gb|EEX68228.1| exodeoxyribonuclease III [Mitsuokella multacida DSM 20544]
Length = 253
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 87/284 (30%), Positives = 137/284 (48%), Gaps = 42/284 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQIL-----MRALSSPPFKNYQIWW 96
+K ++WN N L +K + E +F+ D DV ALQ L P ++ Y W
Sbjct: 3 MKCISWNVNGLRACLKKGFME--SFVK-LDADVFALQETKMQPEQAILDLPGYRQY---W 56
Query: 97 SLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNG 155
+ A+ K Y+GTA+ + +P V++ L +++ +GRVI EF Y + Y PN+
Sbjct: 57 NSAERKGYSGTAVFSR--IEPLAVTYGLGIE--EHDHEGRVITLEFPDCYFVTVYTPNSK 112
Query: 156 WKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY 214
E ++ R +W+ + +++ K P+I CGDLNV+H EID+ +P
Sbjct: 113 RGLERLAY--RMEWEDAFRAYLVALDAKKPVIVCGDLNVAHTEIDLKNP----------- 159
Query: 215 VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGK 274
K + GFT ER +F +L G ID +R L+ ++ + WS +
Sbjct: 160 ----KTNHHNAGFTDEERGKFTELLDAG-FIDTFRALYPDRTGIYTW-WSYLRKARDTNA 213
Query: 275 RMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF+ S L+++I + +GSDHCPV LEL
Sbjct: 214 GWRIDYFVTSARLREKIADATIHNE------VFGSDHCPVGLEL 251
>gi|145534702|ref|XP_001453095.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124420795|emb|CAK85698.1| unnamed protein product [Paramecium tetraurelia]
Length = 348
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 88/288 (30%), Positives = 135/288 (46%), Gaps = 42/288 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILM--------RALSSPPFKNYQ 93
+K +WN N + R + ++ DVI L L L + K+Y
Sbjct: 87 VKIASWNVNGI--RAATKREQAVKYLQDTKFDVICLNELKADQAVFDKENLGAQFGKHYF 144
Query: 94 IWWSLADSK--YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYA 151
++ + +K Y+G A+ K K +S + K++ +GR + AE+E FYL+ Y
Sbjct: 145 LYLNFCKNKGGYSGVAIASK----VKPISVKCDIGISKHDQEGRTLTAEYERFYLVACYV 200
Query: 152 PNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAK 210
PN G K E + R ++WD Q ++ KP I CGDLNVSH EID+++P
Sbjct: 201 PNAGQKLERLDY-RTKEWDVDFQNYLEDLRKKKPTILCGDLNVSHHEIDLANP------- 252
Query: 211 LNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGK 270
NK+ GFT ER +F L++G +D++R LH ++ FS N K
Sbjct: 253 -----AGNKK---TAGFTQEERDQFTNYLQKG-WVDSFRHLHPKEVKYSYFSARFNS--K 301
Query: 271 YRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
K R+DYFI+++E D II ++ GSDH P+ E+
Sbjct: 302 QSNKGWRLDYFIINKESTDAIIMSDIN------TAVEGSDHVPIECEV 343
>gi|344942649|ref|ZP_08781936.1| exodeoxyribonuclease III Xth [Methylobacter tundripaludum SV96]
gi|344259936|gb|EGW20208.1| exodeoxyribonuclease III Xth [Methylobacter tundripaludum SV96]
Length = 254
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 89/290 (30%), Positives = 134/290 (46%), Gaps = 51/290 (17%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ-------ILMRALSSPPFKNYQI 94
+K ++WN N + F+ + D D I LQ + +AL Y++
Sbjct: 1 MKIISWNVNGVRAVQSKG---FAETLALLDADCILLQETKAQADQIDKALEG--IDGYRV 55
Query: 95 WWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPN 153
+ + A+ K Y+G +L +K +P +V + ++++ +GRVI+AEFE F+LLN Y PN
Sbjct: 56 YSNCAERKGYSGVTILSRK--EPLQVISDI--GIVEHDREGRVIVAEFENFFLLNVYVPN 111
Query: 154 NGWKEEENSFQRRRKWDKRIQEFVLQC----SGKPLIWCGDLNVSHEEIDVSHPEFFAAA 209
+G E R+ WD EF+ C KPLI CGD NV+H+EID++ P+
Sbjct: 112 SG--EALARLDYRQTWDI---EFLAYCRQLQKKKPLIACGDFNVAHQEIDIARPK----- 161
Query: 210 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPI 268
PN G+T E F L G L+D +R H + +S WS
Sbjct: 162 -------PNYNK--SAGYTQVEIDGFSRFLDAG-LVDTFRHFHPDT---VAYSWWSFRGG 208
Query: 269 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
+ R RIDY + S+ L + L GSDHCPV +E+
Sbjct: 209 ARARNVGWRIDYVLTSKTLAGNV------KQAFILPEISGSDHCPVGIEI 252
>gi|418962582|ref|ZP_13514438.1| putative exodeoxyribonuclease III [Streptococcus anginosus subsp.
whileyi CCUG 39159]
gi|383345371|gb|EID23497.1| putative exodeoxyribonuclease III [Streptococcus anginosus subsp.
whileyi CCUG 39159]
Length = 275
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 85/300 (28%), Positives = 132/300 (44%), Gaps = 50/300 (16%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFSNFI----TTFDPDVIALQILMRALSSPP------- 88
+K ++WN +SL L + + S + D DVIA+Q + + P
Sbjct: 1 MKLISWNIDSLNAALTSDSARAQLSQAVLQTLVGLDADVIAIQETKLSANGPTKKHLKVL 60
Query: 89 ---FKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEF 141
F +Y+ W A YAGT L K+ PK ++F + +GR+I EF
Sbjct: 61 DELFPHYETTWRSSIEPARKGYAGTMFLYKENLSPK-ITFPEIGAPSTMDAEGRIITLEF 119
Query: 142 ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDV 200
E F++ Y PN G + + R+ WDK+ +++ KP++ GD NV+H EID+
Sbjct: 120 EKFFVTQVYTPNAG--DGLKRLEERQIWDKKYADYLTALDIEKPVLATGDYNVAHNEIDL 177
Query: 201 SHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCG 260
+HP N+ PGFT ER F +L G D +R++H D+
Sbjct: 178 AHPS------------SNRR---SPGFTDEERSGFTNLLNRG-FTDTFRYIH--GDIPNV 219
Query: 261 FSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
+SW + K RIDY++ S + D++ EM G DH P+ LE+
Sbjct: 220 YSWWAQRSKTSKINNSGWRIDYWLTSNRIADKVSKSEMIDSGTR------QDHTPIVLEI 273
>gi|379726888|ref|YP_005319073.1| exodeoxyribonuclease III [Melissococcus plutonius DAT561]
gi|376317791|dbj|BAL61578.1| exodeoxyribonuclease III [Melissococcus plutonius DAT561]
Length = 254
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 82/281 (29%), Positives = 130/281 (46%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L VK N F + D D +Q L Y +W A
Sbjct: 1 MKCISWNVNGLRAIVKKN---FIDVFNELDADFFCVQETKLQDGQIDLELPGYHQYWDYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G A+ KK Q ++E+ ++ +GR++ E+ FYL+N Y PN+ +
Sbjct: 58 IKKGYSGVAVFAKKAAQKVYYGLNMEE----HDQEGRLLTLEYPNFYLVNCYTPNS--QP 111
Query: 159 EENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R W+ ++++++ S KP+I CGDLNV+H+ ID+ +
Sbjct: 112 ELKRLAYRMTWENAFRDYLIKLKSKKPVILCGDLNVAHQPIDLKNW-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
+ + GF+ ER++ +L G ID YR+ + +K+ + WS + R
Sbjct: 158 -RTNQHSAGFSPEEREKMTQLLDNG-FIDTYRYFYPDKEGVYSW-WSYRFNARKNNAGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYFIVS+ LK + + GSDHCPV +EL
Sbjct: 215 IDYFIVSDNLKPTLKEATIYTE------ITGSDHCPVGVEL 249
>gi|424756722|ref|ZP_18184524.1| exodeoxyribonuclease III [Enterococcus faecalis R508]
gi|402408116|gb|EJV40605.1| exodeoxyribonuclease III [Enterococcus faecalis R508]
Length = 251
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 82/281 (29%), Positives = 132/281 (46%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L VK N F + D D LQ L Y +W+ A
Sbjct: 1 MKCISWNVNGLRAVVKKN---FMDVFNELDADFFCLQETKLQAGQIDLELPGYHQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K+ + V + L A ++ +GRVI E+ F+++ Y PN+ +
Sbjct: 58 EKKGYSGTAIFAKE--EALSVRYGLGIEA--HDQEGRVITLEYPEFFIVTCYTPNS--QA 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R W+ ++ + + KP+I CGDLNV+H+ ID+ +
Sbjct: 112 ELKRLAYRMTWEDAFSAYLNELNQEKPVILCGDLNVAHQNIDLKNW-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GFT ER++F +L G D +R+ + E + + WS + R
Sbjct: 158 -KTNQKNAGFTPEERQKFTDLLDSG-FTDTFRYFYPEAEGIYSW-WSYRFNARKNNAGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+VSE L +R+++ ++ + GSDHCPV + L
Sbjct: 215 IDYFVVSESLNERLVSAKIHTDIL------GSDHCPVEVVL 249
>gi|233305|gb|AAB19427.1| Rrp1=recombination repair protein 1 [Drosophila, Peptide, 253 aa]
Length = 253
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 81/281 (28%), Positives = 130/281 (46%), Gaps = 38/281 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPP-----FKNYQIWW 96
LK +WN L +K + + I +PD+ LQ A P Y +W
Sbjct: 1 LKICSWNVAGLRAWLKKDGLQL---IDLEEPDIFCLQETKCANDQLPEEVTRIPGYHPYW 57
Query: 97 SLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 156
YAG A+ K P V + + +++ GR+I AE+E FYL+N Y PN+G
Sbjct: 58 LCMPGGYAGVAIYSK--IMPIHVEYGIGNE--EFDDVGRMITAEYEKFYLINVYVPNSGR 113
Query: 157 KEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 215
K + + R +W+K Q +V + KP++ CGD+NVSH ID+ +P
Sbjct: 114 KLV--NLEPRMRWEKLFQAYVKKLDALKPVVICGDMNVSHMPIDLENP------------ 159
Query: 216 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 275
K + GFT ER + +L G +D +R L+ ++ F W+ + R
Sbjct: 160 ---KNNTKNAGFTQEERDKMTELLGLG-FVDTFRHLYPDRKGAYTF-WTYMANARARNVG 214
Query: 276 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
R+DY +VSE +++ E++ + GSDHCP+++
Sbjct: 215 WRLDYCLVSERFVPKVVEHEIRSQCL------GSDHCPITI 249
>gi|239631265|ref|ZP_04674296.1| exonuclease III [Lactobacillus paracasei subsp. paracasei 8700:2]
gi|239525730|gb|EEQ64731.1| exonuclease III [Lactobacillus paracasei subsp. paracasei 8700:2]
Length = 252
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 88/283 (31%), Positives = 132/283 (46%), Gaps = 45/283 (15%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ-ILMRA----LSSPPFKNYQIWW 96
+K ++WN N L +K EF D D LQ M+A L P + Y +
Sbjct: 1 MKLISWNVNGLRAVLKK---EFMTIFNELDADWFCLQETKMQAGQVELDLPGYHQY---F 54
Query: 97 SLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNG 155
+ A+ K Y+GTA+ K +P V++ + +++ +GR+I E+ FYL+ Y PN+G
Sbjct: 55 NYAERKGYSGTAIFTKH--EPLNVTYGM--GVPEHDTEGRIITLEYPNFYLMTVYTPNSG 110
Query: 156 WKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY 214
E R++WDK + Q + K PL++CGDLNV+H+EID+ +
Sbjct: 111 --GELKRLDYRQQWDKDFLAYTNQLAAKKPLVYCGDLNVAHQEIDLKN------------ 156
Query: 215 VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRG 273
+K + FT ER F L G ID +R L+ + +S WS +
Sbjct: 157 ---DKTNHHNASFTDEERADFTKQLDSG-FIDTFRNLYPDT---VTYSWWSYRFHARANN 209
Query: 274 KRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
RIDYF+ S + K I ++ L GSDHCPV L
Sbjct: 210 AGWRIDYFVSSRDFKPYIQDAKI------LTDIMGSDHCPVEL 246
>gi|417986286|ref|ZP_12626858.1| exodeoxyribonuclease III [Lactobacillus casei 32G]
gi|410526479|gb|EKQ01366.1| exodeoxyribonuclease III [Lactobacillus casei 32G]
Length = 252
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 88/283 (31%), Positives = 132/283 (46%), Gaps = 45/283 (15%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ-ILMRA----LSSPPFKNYQIWW 96
+K ++WN N L +K +F D D LQ M+A L P + Y +
Sbjct: 1 MKLISWNVNGLRAVLKK---DFMTIFNELDADWFCLQETKMQAGQVELDLPGYHQY---F 54
Query: 97 SLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNG 155
+ A+ K Y+GTA+ K +P V++ + +++ +GR+I E+ FYL+ Y PN+G
Sbjct: 55 NYAERKGYSGTAIFTKH--EPLNVTYGM--GVPEHDTEGRIITLEYPNFYLMTVYTPNSG 110
Query: 156 WKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY 214
E R++WDK + Q + K PL++CGDLNV+H+EID+ +
Sbjct: 111 --GELKRLDYRQQWDKDFLAYTNQLAAKKPLVYCGDLNVAHQEIDLKN------------ 156
Query: 215 VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRG 273
+K + GFT ER F L G ID +R L+ + +S WS +
Sbjct: 157 ---DKTNHHNAGFTDEERADFTKQLDSG-FIDTFRNLYPDT---VTYSWWSYRFHARANN 209
Query: 274 KRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
RIDYF+ S K I ++ L GSDHCPV L
Sbjct: 210 AGWRIDYFVSSRNFKPYIQDAKI------LTEIMGSDHCPVEL 246
>gi|392567192|gb|EIW60367.1| hypothetical protein TRAVEDRAFT_45617 [Trametes versicolor
FP-101664 SS1]
Length = 362
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 81/295 (27%), Positives = 139/295 (47%), Gaps = 49/295 (16%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIAL-------QILMRALSSPPFKNYQI 94
++ WN L K F ++ DPDV+ L + + AL+S +
Sbjct: 97 VRIAAWNICGLAAAQKKG---FKYYVEAEDPDVLVLTETKVNNEPVDPALAS---RFAHR 150
Query: 95 WWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPN 153
+W+++D K Y+GTA+L K P V ++L GR++ EF + Y++ TY N
Sbjct: 151 YWAISDKKTYSGTAILSK--VDPLSVDYTLPGHPDPKSVKGRIVTLEFASCYVVGTYVVN 208
Query: 154 NGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLN 212
G + + +++W+ + ++ + K P+IW GDLNV+ +D+++P
Sbjct: 209 AGTGLK--TLDAKKEWNTHFEAYIRELDAKKPVIWTGDLNVAPTALDLTNP--------- 257
Query: 213 GYVPPNKEDWGQ-PGFTIAERKRFGAILKEGR-------LIDAYRFLHKEKDMDCGFSWS 264
K +W + PG+T AE + IL + +D +R LH FS+
Sbjct: 258 ------KPNWNKTPGYTEAETSSYARILNTSKEEVDAPQFVDVWRKLHPALKHYTYFSYR 311
Query: 265 GNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
N + +G R+D F+VS L++R+ CE++ E + SDHCPV +EL+
Sbjct: 312 FN--CREKGIGWRLDMFVVSARLEERVKMCEIRS-----EVYGASDHCPVVMELA 359
>gi|312381587|gb|EFR27301.1| hypothetical protein AND_06082 [Anopheles darlingi]
Length = 517
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 87/283 (30%), Positives = 137/283 (48%), Gaps = 37/283 (13%)
Query: 65 NFITTFDPDVIALQILMRALSSPP-----FKNYQIWWSLADSKYAGTALLVKKCFQPKKV 119
+FI PD++ LQ P K Y +W YAG A+ +K P V
Sbjct: 44 DFIEHEQPDILCLQETKCTEDQLPDEARHIKGYHPYWLCKPGGYAGVAIYSRK--MPIHV 101
Query: 120 SFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ 179
S+ L + + DGR++ AE+E FYL+ Y PN G K + +R +WD++ +++ +
Sbjct: 102 SYGLGDE--EQDQDGRLLTAEYEKFYLVCVYVPNAGNKLV--TLPKRMRWDEKFHQYLRE 157
Query: 180 C-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAI 238
S KP+I CGD+NV+HEEID+++P+ NK++ GFT ER +
Sbjct: 158 LDSKKPVILCGDMNVAHEEIDLANPK------------TNKKN---AGFTQEERDGLSKL 202
Query: 239 LKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEM 296
L G +D +R L+ ++ F W+ +G R K + R+DYFIVS+ D++ M
Sbjct: 203 LSFG-FVDTFRQLYPDRKAAYSF-WTY--MGGARAKNVGWRLDYFIVSQRFTDKVTDNVM 258
Query: 297 QGHGIELE----GFYGSDHCPVSLELSEASSDSEKREKKNLDE 335
H G G ++ V ++L S + E + LDE
Sbjct: 259 AEHSASPTAPHGGAPGEEYGGVFIDLHFLSEEEETDLIRTLDE 301
>gi|139439406|ref|ZP_01772847.1| Hypothetical protein COLAER_01867 [Collinsella aerofaciens ATCC
25986]
gi|133775185|gb|EBA39005.1| exodeoxyribonuclease III [Collinsella aerofaciens ATCC 25986]
Length = 272
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 87/291 (29%), Positives = 128/291 (43%), Gaps = 43/291 (14%)
Query: 44 FVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLADS 101
F +WN N L +K + P F D D++ALQ L Y WS A+
Sbjct: 7 FASWNVNGLRAVLKKD-PSFIQIAQELDVDILALQETKLQEGQVDIDLPGYHQTWSYAER 65
Query: 102 K-YAGTALLVKK---------CFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYA 151
K Y+GTA+ ++ P + +GRV EF+ F+ ++ Y
Sbjct: 66 KGYSGTAVFSRQEPLRVLRADALLPYAGGGEAAVLVAQAATEGRVCALEFDKFWFVDVYT 125
Query: 152 PNNGWKEEENSFQRRRKWDKRIQEFVLQC---SGKPLIWCGDLNVSHEEIDVSHPEFFAA 208
PN + E R WD + F+ +GKP++ CGD NV+HEEID+ +P
Sbjct: 126 PNA--QNELARIDVRMAWDDAYRGFLNALERETGKPVVTCGDFNVAHEEIDLKNP----- 178
Query: 209 AKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNP 267
K + G GF+ ER +F +L G D +R D++ +S WS
Sbjct: 179 ----------KSNRGNAGFSDEERGKFTELLNAG-FTDTWR--AANPDVEGVYSWWSYRF 225
Query: 268 IGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
+ RIDYF+VS+ IA ++ GI + +GSDHCPV+L L
Sbjct: 226 NARKNNAGWRIDYFLVSDS-----IAANVRDTGIRGD-IFGSDHCPVTLTL 270
>gi|227544091|ref|ZP_03974140.1| exodeoxyribonuclease III [Lactobacillus reuteri CF48-3A]
gi|338202504|ref|YP_004648649.1| exodeoxyribonuclease [Lactobacillus reuteri SD2112]
gi|227185924|gb|EEI65995.1| exodeoxyribonuclease III [Lactobacillus reuteri CF48-3A]
gi|336447744|gb|AEI56359.1| exodeoxyribonuclease [Lactobacillus reuteri SD2112]
Length = 275
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 89/303 (29%), Positives = 132/303 (43%), Gaps = 56/303 (18%)
Query: 42 LKFVTWNANSLLLRVKNN------WPEFSNFITTFDPDVIALQILMRALSSPP------- 88
+KF++WN +S+ + E I PDVIA+Q + + P
Sbjct: 1 MKFISWNIDSINAALTGTSVRAGETREVLKKIAAMKPDVIAIQETKLSKNGPTKKHLTVL 60
Query: 89 ---FKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEF 141
F NY++ W A YAGT L ++PK V++ + +GR+I EF
Sbjct: 61 QELFPNYEVAWRSSVEPARKGYAGTMYLYLAQYEPK-VTYPKINAPEPMDDEGRIITLEF 119
Query: 142 ETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEE 197
FY+ Y PN+G N +R R+ WD ++++ + KP+I GD NV+HEE
Sbjct: 120 PDFYVTEVYTPNSG-----NGLKRLDERQTWDDCYRDYLHELDQQKPVIASGDFNVAHEE 174
Query: 198 IDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDM 257
ID++HP + GFT ER F +L G D++R LH D
Sbjct: 175 IDLAHP---------------ATNHHSAGFTDEERTHFSKLLAAG-FTDSFRHLH--PDE 216
Query: 258 DCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVS 315
+SW + K RIDY++VS+ L D+I M G DH P+
Sbjct: 217 KGVYSWWAQRVITSKQNNSGWRIDYWLVSDRLADKITEAGMIDSGER------RDHTPII 270
Query: 316 LEL 318
LE+
Sbjct: 271 LEI 273
>gi|218291327|ref|ZP_03495287.1| exodeoxyribonuclease III Xth [Alicyclobacillus acidocaldarius LAA1]
gi|218238773|gb|EED05987.1| exodeoxyribonuclease III Xth [Alicyclobacillus acidocaldarius LAA1]
Length = 174
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 99/191 (51%), Gaps = 26/191 (13%)
Query: 129 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIW 187
+++P+GR+I EF +FY++ Y PN K + + R +W+ + ++ KP+I
Sbjct: 7 RHDPEGRIITLEFPSFYVVTVYTPNA--KRDLSRLPYRLEWEDAFRAYLCALDREKPVIA 64
Query: 188 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 247
CGDLNV+HEEID+ + K + G GFT ER + +L G +D
Sbjct: 65 CGDLNVAHEEIDIKNA---------------KSNRGNSGFTDEERAKMTELLDAG-FVDT 108
Query: 248 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 307
+R L+ D WS P + R RIDYF+VSE L+DRI+ + H +
Sbjct: 109 FRALYPNV-TDKYTWWSNMPGVRERNIGWRIDYFLVSERLRDRILEARIDDHVL------ 161
Query: 308 GSDHCPVSLEL 318
GSDHCPV LE+
Sbjct: 162 GSDHCPVVLEV 172
>gi|268608445|ref|ZP_06142172.1| exodeoxyribonuclease [Ruminococcus flavefaciens FD-1]
Length = 248
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 86/281 (30%), Positives = 133/281 (47%), Gaps = 42/281 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPF--KNYQIWWSLA 99
+K ++WN N + F +F D D+ +Q F + Y ++ A
Sbjct: 1 MKLISWNVNGFRACLTKG---FGDFFAEADADIFCIQETKMQPDQADFSPEGYHKYFHSA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ KK +P V+F + ++ +GRVI E+E FY + Y PN +
Sbjct: 58 IKKGYSGTAVYTKK--EPLSVTFGING---EHTDEGRVITCEYEDFYFVGCYVPNA--QN 110
Query: 159 EENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R +++ ++ ++ + K P+I+CGDLNV+H EID+ +P
Sbjct: 111 ELKRIDYRMEFEDAMRGYLSELDKKKPVIYCGDLNVAHNEIDLKNP-------------- 156
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
K + G GF+ ER +F +L G D+YR L+ EK +SW K R K +
Sbjct: 157 -KSNVGNAGFSDEERGKFTELLAAG-FSDSYRSLYPEK---IEYSWWSYRF-KAREKNIG 210
Query: 277 -RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
RIDYF+VS+ R+ ++ L GSDHCPV L
Sbjct: 211 WRIDYFVVSDRFMPRVKDSQI------LTDVTGSDHCPVQL 245
>gi|242004144|ref|XP_002422991.1| Recombination repair protein, putative [Pediculus humanus corporis]
gi|212505907|gb|EEB10253.1| Recombination repair protein, putative [Pediculus humanus corporis]
Length = 332
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 87/283 (30%), Positives = 133/283 (46%), Gaps = 42/283 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPFKN-----YQIWW 96
K +WN SL N E+ + PDV+ Q + + P ++ ++ +
Sbjct: 78 FKISSWNVVSLKSITNKNGMEY---VRRESPDVMCFQETKCSEKNAPSESKLPGYHRYFA 134
Query: 97 SLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 156
+ YAG AL K +P V + +++ +GRVI AE+E FYL+ Y PN G
Sbjct: 135 AGVKEGYAGVALYSK--LKPLSVKIGIGHK--EHDTEGRVITAEYEDFYLVTAYVPNAG- 189
Query: 157 KEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 215
+ +R KWD + ++ + S KP+I CGDLNV+H EID+ +P
Sbjct: 190 -RGLVTLPKRLKWDVAFKGYLKKLDSEKPVILCGDLNVAHNEIDLKNPS----------- 237
Query: 216 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 275
+ GFT ER F +L G ID +R L+ K+ + W N IG R +
Sbjct: 238 ----TNTKTAGFTQEERDGFTKLLNAG-FIDTFRKLYPNKEGAYTY-W--NYIGNARSRN 289
Query: 276 M--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
R+DYF+VSE + + C+ + + YGSDHCP++L
Sbjct: 290 AGWRLDYFVVSERIMSTV--CD----SVIRKEVYGSDHCPITL 326
>gi|148544314|ref|YP_001271684.1| exodeoxyribonuclease III Xth [Lactobacillus reuteri DSM 20016]
gi|184153692|ref|YP_001842033.1| exodeoxyribonuclease [Lactobacillus reuteri JCM 1112]
gi|227365036|ref|ZP_03849073.1| exodeoxyribonuclease III Xth [Lactobacillus reuteri MM2-3]
gi|325681652|ref|ZP_08161172.1| exodeoxyribonuclease [Lactobacillus reuteri MM4-1A]
gi|148531348|gb|ABQ83347.1| exodeoxyribonuclease III Xth [Lactobacillus reuteri DSM 20016]
gi|183225036|dbj|BAG25553.1| exodeoxyribonuclease [Lactobacillus reuteri JCM 1112]
gi|227069924|gb|EEI08310.1| exodeoxyribonuclease III Xth [Lactobacillus reuteri MM2-3]
gi|324978964|gb|EGC15911.1| exodeoxyribonuclease [Lactobacillus reuteri MM4-1A]
Length = 275
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 89/303 (29%), Positives = 132/303 (43%), Gaps = 56/303 (18%)
Query: 42 LKFVTWNANSLLLRVKNN------WPEFSNFITTFDPDVIALQILMRALSSPP------- 88
+KF++WN +S+ + E I PDVIA+Q + + P
Sbjct: 1 MKFISWNIDSINAALTGTSVRAGETREVLKKIAVMKPDVIAIQETKLSKNGPTKKHLTVL 60
Query: 89 ---FKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEF 141
F NY++ W A YAGT L ++PK V++ + +GR+I EF
Sbjct: 61 QELFPNYEVAWRSSVEPARKGYAGTMYLYLAQYEPK-VTYPKINAPEPMDDEGRIITLEF 119
Query: 142 ETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEE 197
FY+ Y PN+G N +R R+ WD ++++ + KP+I GD NV+HEE
Sbjct: 120 PDFYVTEVYTPNSG-----NGLKRLDERQTWDDCYRDYLHELDQQKPVIASGDFNVAHEE 174
Query: 198 IDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDM 257
ID++HP + GFT ER F +L G D++R LH D
Sbjct: 175 IDLAHP---------------ATNHHSAGFTDEERTHFSKLLAAG-FTDSFRHLH--PDE 216
Query: 258 DCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVS 315
+SW + K RIDY++VS+ L D+I M G DH P+
Sbjct: 217 KGVYSWWAQRVITSKQNNSGWRIDYWLVSDRLADKITEAGMIDSGER------RDHTPII 270
Query: 316 LEL 318
LE+
Sbjct: 271 LEI 273
>gi|322378535|ref|ZP_08052983.1| exodeoxyribonuclease [Helicobacter suis HS1]
gi|321149049|gb|EFX43501.1| exodeoxyribonuclease [Helicobacter suis HS1]
Length = 306
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 84/286 (29%), Positives = 142/286 (49%), Gaps = 40/286 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
++ V+WN N L ++ F +F+ D+ +Q + + +S F+ Y+++W+ A
Sbjct: 52 MRLVSWNVNGLRACMQKG---FCDFLEQSQADIFCVQETKMQQEQASFCFEGYEVFWNSA 108
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G L K P +VS+ + +++ +GRVI E+ FYL+N Y PN +
Sbjct: 109 QKKGYSGVLTLSK--IAPLQVSYGIGIA--EHDTEGRVITCEYPNFYLVNVYTPNA--QR 162
Query: 159 EENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R +W++ + F+ K ++ CGDLNV+H EID+++P+
Sbjct: 163 GLLRLPYRLEWERSFRGFLQNLMQKKAVVVCGDLNVAHNEIDLTNPQ------------S 210
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM- 276
N+ + GF+ ER F +L G LID +R + K ++W + I + R K +
Sbjct: 211 NRYN---AGFSDPERDAFRQLLNLG-LIDTFRHFYPTKAE--SYTW-WSYINQARAKNIG 263
Query: 277 -RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEA 321
RIDYF+ S+ L + + + H + GSDHCPV L+L E
Sbjct: 264 WRIDYFLTSQTLNSCLQSAYIYNHIL------GSDHCPVGLDLHET 303
>gi|423335525|ref|ZP_17313300.1| unnamed protein product [Lactobacillus reuteri ATCC 53608]
gi|337728755|emb|CCC03874.1| unnamed protein product [Lactobacillus reuteri ATCC 53608]
Length = 275
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 89/303 (29%), Positives = 132/303 (43%), Gaps = 56/303 (18%)
Query: 42 LKFVTWNANSLLLRVKNN------WPEFSNFITTFDPDVIALQILMRALSSPP------- 88
+KF++WN +S+ + E I PDVIA+Q + + P
Sbjct: 1 MKFISWNIDSINAALTGTSVRAGETREVLRKIAAMKPDVIAIQETKLSKNGPTKKHLTVL 60
Query: 89 ---FKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEF 141
F NY++ W A YAGT L ++PK V++ + +GR+I EF
Sbjct: 61 QELFPNYEVAWRSSVEPARKGYAGTMYLYLAQYEPK-VTYPKINAPEPMDDEGRIITLEF 119
Query: 142 ETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEE 197
FY+ Y PN+G N +R R+ WD ++++ + KP+I GD NV+HEE
Sbjct: 120 PDFYVTEVYTPNSG-----NGLKRLDERQTWDDCYRDYLRELDQQKPVIASGDFNVAHEE 174
Query: 198 IDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDM 257
ID++HP + GFT ER F +L G D++R LH D
Sbjct: 175 IDLAHP---------------ATNHHSAGFTDEERTHFSKLLAAG-FTDSFRHLH--PDE 216
Query: 258 DCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVS 315
+SW + K RIDY++VS+ L D+I M G DH P+
Sbjct: 217 KGVYSWWAQRVITSKQNNSGWRIDYWLVSDRLADKITEAGMIDSGER------RDHTPII 270
Query: 316 LEL 318
LE+
Sbjct: 271 LEI 273
>gi|310831095|ref|YP_003969738.1| putative apurinic-apyrimidinic endonuclease 1 [Cafeteria
roenbergensis virus BV-PW1]
gi|309386279|gb|ADO67139.1| putative apurinic-apyrimidinic endonuclease 1 [Cafeteria
roenbergensis virus BV-PW1]
Length = 262
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 89/294 (30%), Positives = 138/294 (46%), Gaps = 48/294 (16%)
Query: 41 PLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPFKNYQ------- 93
P K + WN N + +K + + I T P +I + S PF + Q
Sbjct: 2 PTKIIAWNINGIKAHLKKD--NLFDLIETEKPHIICMG---ETKISCPFIDVQNQLKEKI 56
Query: 94 -----IWWS--LADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYL 146
+WS L Y+GTA+ K+ K +S L + +GR+I EF+ +YL
Sbjct: 57 KGYKYRYWSPCLVKKGYSGTAIFSKR----KPISTYLGMNQPGEDDEGRMITLEFKEYYL 112
Query: 147 LNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEF 205
++ Y PN+G + R +WDK +++ KP+I CGDLNV++E ID+++P
Sbjct: 113 IHVYTPNSGQGLVRLQY-RTEEWDKNFRKYCANLQKIKPIIICGDLNVANENIDLANPS- 170
Query: 206 FAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSG 265
NK++ GFT ERK F L + LID +R+L+ D+ F W+
Sbjct: 171 -----------SNKKN---AGFTDVERKSFKLTLTKLNLIDTFRYLY-PTDIKYSF-WTY 214
Query: 266 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
+ + RIDYF+VSE+L ++ + H GSDH PV L+L+
Sbjct: 215 YHNARPKNIGWRIDYFLVSEKLLPKVKDSNILTH------IMGSDHAPVILKLT 262
>gi|160945969|ref|ZP_02093195.1| hypothetical protein FAEPRAM212_03502 [Faecalibacterium prausnitzii
M21/2]
gi|158443700|gb|EDP20705.1| exodeoxyribonuclease III [Faecalibacterium prausnitzii M21/2]
gi|295103228|emb|CBL00772.1| exodeoxyribonuclease III [Faecalibacterium prausnitzii SL3/3]
Length = 250
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 81/282 (28%), Positives = 130/282 (46%), Gaps = 39/282 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPF--KNYQIWWSLA 99
+K ++WN N L + + F+ D D+ ++Q F + Y + A
Sbjct: 1 MKLISWNVNGLRACLTHG---FAESFAALDADIFSVQETKMQPGQADFAPEGYTEYTYSA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA K LE+ ++ +GRV+ E+ FYL+N Y PN+ ++
Sbjct: 58 EKKGYSGTACWCKTAPLAVTTGIGLEQ----HDHEGRVLTLEYPGFYLVNCYTPNS--QD 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R +W+ + ++L K P+I CGDLNV+H E+D+ +
Sbjct: 112 GLKRLDYRMEWEDAFRAYLLALDAKKPVILCGDLNVAHTEMDIKNA-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
K + GFT ER + +L G D++R +H + + +S WS + +
Sbjct: 158 -KTNRMSAGFTDQERAKMTELLAAG-FADSFRVVHPD---EVKYSWWSYRFHAREKNAGW 212
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYFIVS + DRI A E+ +GSDHCPV L++
Sbjct: 213 RIDYFIVSRRIADRIRAAEIHNE------IFGSDHCPVELQI 248
>gi|257079900|ref|ZP_05574261.1| exonuclease III [Enterococcus faecalis JH1]
gi|294779916|ref|ZP_06745298.1| exodeoxyribonuclease III [Enterococcus faecalis PC1.1]
gi|307269235|ref|ZP_07550589.1| exodeoxyribonuclease III [Enterococcus faecalis TX4248]
gi|397700923|ref|YP_006538711.1| exodeoxyribonuclease III [Enterococcus faecalis D32]
gi|422866830|ref|ZP_16913440.1| exodeoxyribonuclease III [Enterococcus faecalis TX1467]
gi|256987930|gb|EEU75232.1| exonuclease III [Enterococcus faecalis JH1]
gi|294453028|gb|EFG21448.1| exodeoxyribonuclease III [Enterococcus faecalis PC1.1]
gi|306514454|gb|EFM83015.1| exodeoxyribonuclease III [Enterococcus faecalis TX4248]
gi|329578016|gb|EGG59431.1| exodeoxyribonuclease III [Enterococcus faecalis TX1467]
gi|397337562|gb|AFO45234.1| exodeoxyribonuclease III [Enterococcus faecalis D32]
Length = 251
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 81/281 (28%), Positives = 133/281 (47%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L VK N F + D D LQ L Y +W+ A
Sbjct: 1 MKCISWNVNGLRAVVKKN---FMDVFNELDADFFCLQETKLQAGQIDLELPGYHQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K+ + V + L A ++ +GR+I E+ F+++ Y PN+ +
Sbjct: 58 EKKGYSGTAIFAKE--EALSVRYGLGIEA--HDQEGRMITLEYPEFFMVTCYTPNS--QA 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R W+ + ++ + + KP+I CGDLNV+H+ ID+ +
Sbjct: 112 ELKRLAYRMTWEDAFRAYLNELNQEKPVILCGDLNVAHQNIDLKNW-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GFT ER++F +L G D +R+ + E + + WS + R
Sbjct: 158 -KTNQKNAGFTPEERQKFTELLDSG-FTDTFRYFYPEAEGIYSW-WSYRFNARKNNAGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+VSE L +R+++ ++ + GSDHCPV + L
Sbjct: 215 IDYFVVSESLNERLVSAKIHTDIL------GSDHCPVEVVL 249
>gi|255578467|ref|XP_002530098.1| ap endonuclease, putative [Ricinus communis]
gi|223530409|gb|EEF32297.1| ap endonuclease, putative [Ricinus communis]
Length = 486
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 83/281 (29%), Positives = 138/281 (49%), Gaps = 37/281 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPFKNYQIWWSLADS 101
+K ++WN N L +K + DV+ Q L + ++N +W+ + S
Sbjct: 237 VKLMSWNVNGLRALLKLEGFSAVELAQRENFDVLCFQ--ETKLQAKGYENS--FWTCSHS 292
Query: 102 K--YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEE 159
K Y+GTA++ + +P VS+ L ++ +GR++ AEF++FYLLN Y PN+G +
Sbjct: 293 KLGYSGTAIVSR--VKPLSVSYGL--GIADHDSEGRLVTAEFDSFYLLNAYVPNSGDGLK 348
Query: 160 ENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPN 218
S+ R +WD + ++ + KP+I GDLN +H+EID+ +P A + N
Sbjct: 349 RLSY-RVSQWDLSLSNYMKELEKSKPVILNGDLNCAHQEIDIYNP---AGNRRNA----- 399
Query: 219 KEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMR 277
GFT ER+ F +D++R H + G++ W G+ K R
Sbjct: 400 -------GFTDEERQSFETNFLSRGFVDSFRKQHPDV---VGYTYWGYRHGGRKTNKGWR 449
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
+DYF+VSE + D++ + + GSDHCP+ L L
Sbjct: 450 LDYFLVSESISDQVHDSYI------VPDVTGSDHCPIGLVL 484
>gi|315641336|ref|ZP_07896412.1| exodeoxyribonuclease III [Enterococcus italicus DSM 15952]
gi|315482909|gb|EFU73429.1| exodeoxyribonuclease III [Enterococcus italicus DSM 15952]
Length = 252
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 84/283 (29%), Positives = 131/283 (46%), Gaps = 38/283 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L +K N F + T D D LQ L Y +W+ A
Sbjct: 1 MKLISWNVNGLRAVMKKN---FMDVFTQLDADFFCLQETKLQAGQIEMDLPGYTQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GTA+ K+ V + + K +++ +GRVI E+ FYL+ Y PN+ +
Sbjct: 58 VKKGYSGTAIFAKE--PADNVFYGIGKE--EHDQEGRVITLEYPQFYLVTCYTPNS--QN 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R +W+ ++ + +P+I CGDLNV+H+EID+ +
Sbjct: 112 ELKRLDYRMEWEDDFVAYLDELKKDRPVIVCGDLNVAHQEIDLKNW-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
K + GFT ER +F A+L G D +R + E + +S WS +
Sbjct: 158 -KTNQKNAGFTNEERAKFTALLDHG-YTDTFRHFYPE--LTGAYSWWSYRFNARKNNAGW 213
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
RIDYFIVS +L + + + + GSDHCPV L+++
Sbjct: 214 RIDYFIVSNDLTSHLTSASIHADIL------GSDHCPVELQVT 250
>gi|194467701|ref|ZP_03073688.1| exodeoxyribonuclease III Xth [Lactobacillus reuteri 100-23]
gi|194454737|gb|EDX43634.1| exodeoxyribonuclease III Xth [Lactobacillus reuteri 100-23]
Length = 275
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 88/303 (29%), Positives = 132/303 (43%), Gaps = 56/303 (18%)
Query: 42 LKFVTWNANSLLLRVKNN------WPEFSNFITTFDPDVIALQILMRALSSPP------- 88
+KF++WN +S+ + E I PDVIA+Q + + P
Sbjct: 1 MKFISWNIDSINAALTGTSVRAGETREVLQKIAAMKPDVIAIQETKLSKNGPTKKHLTVL 60
Query: 89 ---FKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEF 141
F NY++ W A YAGT L ++PK +++ + +GR+I EF
Sbjct: 61 QELFPNYEVAWRSSVEPARKGYAGTMYLYLAQYEPK-ITYPKINAPEPMDDEGRIITLEF 119
Query: 142 ETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEE 197
FY+ Y PN+G N +R R+ WD ++++ + KP+I GD NV+HEE
Sbjct: 120 PDFYVTEVYTPNSG-----NGLKRLDERQTWDDCYRDYLHELDQQKPVIASGDFNVAHEE 174
Query: 198 IDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDM 257
ID++HP + GFT ER F +L G D++R LH D
Sbjct: 175 IDLAHP---------------ATNHHSAGFTDEERTHFSKLLAAG-FTDSFRHLH--PDE 216
Query: 258 DCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVS 315
+SW + K RIDY++VS+ L D+I M G DH P+
Sbjct: 217 KGVYSWWAQRVITSKQNNSGWRIDYWLVSDRLADKITEAGMIDSGER------RDHTPII 270
Query: 316 LEL 318
LE+
Sbjct: 271 LEI 273
>gi|403335404|gb|EJY66875.1| Exonuclease III [Oxytricha trifallax]
gi|403370677|gb|EJY85206.1| Exonuclease III [Oxytricha trifallax]
Length = 583
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 93/297 (31%), Positives = 141/297 (47%), Gaps = 44/297 (14%)
Query: 35 ENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILM---RALSSPPF-- 89
E+ K D L WN N L + N F+ DPD++ + + S F
Sbjct: 68 EDFKSDQLNIWVWNINGLQAVI--NKGMLDVFLQGEDPDIVCFNEIKTDPEKIKSASFHT 125
Query: 90 ---KNYQIWWSLADSK--YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETF 144
K+Y+ +W+ + SK Y+GT L+ K +P KV+F + +++ +GRVI AEF F
Sbjct: 126 KIPKDYEQYWNCSKSKKGYSGTGLITK--IKPIKVTFDI--GIEEHDQEGRVITAEFSKF 181
Query: 145 YLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC---SGKPLIWCGDLNVSHEEIDVS 201
L+ Y PN+G S+ R ++WDK +++ + + KPLI GDLNV+ E+DV
Sbjct: 182 VLVAVYVPNSGDDLRRLSY-RTQEWDKAFFDYLDRTRIETNKPLILTGDLNVARNELDVF 240
Query: 202 HPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGF 261
+ K+ Y P ERK F + + G ID +R L+ +K F
Sbjct: 241 DTK--GKDKVACYTP-------------EERKSFESFINRG-YIDTFRHLYPDKREYTYF 284
Query: 262 SWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
S N K K RIDYF+V ++ D + ++ H + + GSDH PV L L
Sbjct: 285 SARFN--NKVTNKGWRIDYFVVHQD--DINMVTDVTIH----KDYNGSDHVPVCLHL 333
>gi|330836714|ref|YP_004411355.1| exodeoxyribonuclease III [Sphaerochaeta coccoides DSM 17374]
gi|329748617|gb|AEC01973.1| exodeoxyribonuclease III Xth [Sphaerochaeta coccoides DSM 17374]
Length = 252
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 85/280 (30%), Positives = 130/280 (46%), Gaps = 36/280 (12%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLAD 100
KFV+WN N + + F ++ + D D+ LQ L +Y +W+ A
Sbjct: 3 KFVSWNVNGIRSCLGKG---FLDYFFSTDADIFCLQETKLQEGQHDIELPDYHQYWNYAQ 59
Query: 101 SK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEE 159
K Y+GTAL K+ +P +V+F + + +GRVI AE+ ++L+ Y PN+ + E
Sbjct: 60 KKGYSGTALFSKE--KPVRVTFGI--APFIEDAEGRVITAEYPAYFLVCVYTPNS--QRE 113
Query: 160 ENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPN 218
R KWD + ++L KP+ CGDLNV+H+EID+ +P
Sbjct: 114 LLRLDYRMKWDDAFRAYILSLEAMKPVFVCGDLNVAHKEIDLKNP--------------- 158
Query: 219 KEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRI 278
K + GFT ER +F L G D++R L+ +D WS + + RI
Sbjct: 159 KSNVRNAGFTQEERDKFSLFLDAG-FTDSFRHLYPHV-IDRYSWWSYMANARAKNIGWRI 216
Query: 279 DYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
DY++ S D+I + H GSDH PV+L L
Sbjct: 217 DYWLTSNRYADKIHDSLIDDH------IPGSDHAPVALLL 250
>gi|196233332|ref|ZP_03132177.1| exodeoxyribonuclease III Xth [Chthoniobacter flavus Ellin428]
gi|196222637|gb|EDY17162.1| exodeoxyribonuclease III Xth [Chthoniobacter flavus Ellin428]
Length = 216
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 118/223 (52%), Gaps = 41/223 (18%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ---------ILMRALSSPPFKNY 92
+K ++WN N + +K F++FI + +PD++ALQ ++ +AL+ Y
Sbjct: 1 MKLISWNVNGIRAVLKKG---FTDFIESENPDILALQETKATPEDVVVPQALAE-----Y 52
Query: 93 QIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYA 151
+W++A+ K Y+GTA+ K K ++ +L +++ +GRVI AE+ F+L+N Y
Sbjct: 53 TSFWNIAEKKGYSGTAIFTKT----KPIAVTLGIGVAEHDREGRVITAEYADFFLVNVYV 108
Query: 152 PNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAK 210
PN+ K E R++WD+ ++ + KP+IWCGDLNV+H EID++ P
Sbjct: 109 PNS--KRELTRLAYRQQWDRDFLAYLKKLELKKPVIWCGDLNVAHTEIDLARP------- 159
Query: 211 LNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHK 253
K++ GFT ER F A + G +DA+R K
Sbjct: 160 --------KDNVKNHGFTPEERAGFDAFVGAG-FVDAFREFEK 193
>gi|300362647|ref|ZP_07058823.1| exodeoxyribonuclease III [Lactobacillus gasseri JV-V03]
gi|300353638|gb|EFJ69510.1| exodeoxyribonuclease III [Lactobacillus gasseri JV-V03]
Length = 275
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 83/301 (27%), Positives = 135/301 (44%), Gaps = 50/301 (16%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQILMRALSSPPFKNYQIW 95
++ ++WN +SL + ++ N I DPD+IA+Q + P K+ +I
Sbjct: 1 MRLISWNIDSLNAALTSDSARAKLTRGVLNTIKEKDPDIIAIQETKLRATGPTKKHQEIL 60
Query: 96 WSL--------------ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEF 141
+ A YAGT L K P+ V+ + + +GR++ EF
Sbjct: 61 AEMFPDYDYVWRSSEEPARKGYAGTMFLYKNTLTPE-VTKPVIGAPEPMDHEGRILTLEF 119
Query: 142 ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDV 200
+ +Y+ Y PN+G E R+ WD++ E++ + KP+I GD NV+H ID+
Sbjct: 120 DNYYVTQVYTPNSG--NELKRLDDRQVWDEKYTEYLQKLDQVKPVIASGDYNVAHTPIDL 177
Query: 201 SHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCG 260
HPE + GFT ER+ F +LK G D +R +H +++
Sbjct: 178 KHPE---------------NNHHNAGFTDEERQDFDKLLKLG-FTDTFRKIH--GNVEGV 219
Query: 261 FSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
+SW + K RIDY+IVS + ++I EM L+ DHCP+ LE+
Sbjct: 220 YSWWAQRVRTSKANNSGWRIDYYIVSNRIANQITKSEM------LDTGERKDHCPIMLEI 273
Query: 319 S 319
+
Sbjct: 274 N 274
>gi|315221911|ref|ZP_07863822.1| exodeoxyribonuclease III [Streptococcus anginosus F0211]
gi|315188877|gb|EFU22581.1| exodeoxyribonuclease III [Streptococcus anginosus F0211]
Length = 275
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 83/300 (27%), Positives = 132/300 (44%), Gaps = 50/300 (16%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFSNFI----TTFDPDVIALQILMRALSSPP------- 88
+K ++WN +SL L + + S + D D+IA+Q + + P
Sbjct: 1 MKLISWNIDSLNAALTSDSARAQLSQAVLQTLVRLDADIIAIQETKLSANGPTKKHLKVL 60
Query: 89 ---FKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEF 141
F +Y+ W A YAGT L K+ PK ++F + +GR+I EF
Sbjct: 61 DELFPHYETTWRSSIEPARKGYAGTMFLYKENLSPK-ITFPEIGAPSTMDSEGRIITLEF 119
Query: 142 ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDV 200
+ F++ Y PN G + + R+ WDK+ +++ KP++ GD NV+H EID+
Sbjct: 120 DNFFVTQVYTPNAG--DGLKRLEDRQIWDKKYADYLTALDIEKPVLATGDYNVAHNEIDL 177
Query: 201 SHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCG 260
+HP N+ PGFT ER F +L G D +R++H D+
Sbjct: 178 AHPS------------SNRR---SPGFTDEERSGFTNLLNRG-FTDTFRYIH--GDIPNV 219
Query: 261 FSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
+SW + K RIDY++ S + D++ EM G DH P+ LE+
Sbjct: 220 YSWWAQRSKTSKINNSGWRIDYWLTSNRIADKVTKSEMIDSGTR------QDHTPIVLEI 273
>gi|403365259|gb|EJY82409.1| Exonuclease III [Oxytricha trifallax]
Length = 645
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 93/300 (31%), Positives = 142/300 (47%), Gaps = 44/300 (14%)
Query: 32 SSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILM---RALSSPP 88
+ E+ K D L WN N L + N F+ DPD++ + + S
Sbjct: 65 AKHEDFKSDQLNIWVWNINGLQAVI--NKGMLDVFLQGEDPDIVCFNEIKTDPEKIKSAS 122
Query: 89 F-----KNYQIWWSLADSK--YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEF 141
F K+Y+ +W+ + SK Y+GT L+ K +P KV+F + +++ +GRVI AEF
Sbjct: 123 FHTKIPKDYEQYWNCSKSKKGYSGTGLITK--IKPIKVTFDI--GIEEHDQEGRVITAEF 178
Query: 142 ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC---SGKPLIWCGDLNVSHEEI 198
F L+ Y PN+G S+ R ++WDK +++ + + KPLI GDLNV+ E+
Sbjct: 179 SKFVLVAVYVPNSGDDLRRLSY-RTQEWDKAFFDYLDRTRIETNKPLILTGDLNVARNEL 237
Query: 199 DVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMD 258
DV + K+ Y P ERK F + + G ID +R L+ +K
Sbjct: 238 DVFDTK--GKDKVACYTP-------------EERKSFESFINRG-YIDTFRHLYPDKREY 281
Query: 259 CGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
FS N K K RIDYF+V ++ D + ++ H + + GSDH PV L L
Sbjct: 282 TYFSARFN--NKVTNKGWRIDYFVVHQD--DINMVTDVTIH----KDYNGSDHVPVCLHL 333
>gi|13540877|ref|NP_110565.1| exonuclease III [Thermoplasma volcanium GSS1]
gi|14324259|dbj|BAB59187.1| exodeoxyribonuclease [Thermoplasma volcanium GSS1]
Length = 252
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 85/282 (30%), Positives = 132/282 (46%), Gaps = 43/282 (15%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPFKNYQIWWSLADS- 101
KF++WN N L +K+ + I D IA+Q + S P + Y + + + ++
Sbjct: 6 KFLSWNVNGLRAVIKSGGLDL---IRNGDYFAIAMQETKVDVKSVPEEMYHLGYHVYNNP 62
Query: 102 ----KYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWK 157
Y+GT L ++ +P VS+ E +GR++ EF+ FY +N Y PN+ +
Sbjct: 63 AKRKGYSGTMTLSRE--KPIDVSYGFE------SEEGRILNLEFDNFYFINAYFPNS--Q 112
Query: 158 EEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVP 216
+ +DK+ + KPLI CGD NV+HEEID++ P
Sbjct: 113 HGLTRLDLKLDFDKKFLGYANDLRKKKPLIICGDFNVAHEEIDIARP------------- 159
Query: 217 PNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM 276
K++ GFTI ER L G +D +R + +S+ N K G
Sbjct: 160 --KDNEHNAGFTIEERTWMSQFLSSG-YVDTFRLFTTDGGHYSWWSYRFNAREKNIG--W 214
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF+VS+++KD++ A + LE GSDH PV LE+
Sbjct: 215 RIDYFVVSDDIKDKVKASRI------LENVKGSDHAPVELEI 250
>gi|312900096|ref|ZP_07759412.1| exodeoxyribonuclease III [Enterococcus faecalis TX0470]
gi|311292731|gb|EFQ71287.1| exodeoxyribonuclease III [Enterococcus faecalis TX0470]
Length = 251
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 81/281 (28%), Positives = 133/281 (47%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K ++WN N L K N F + D D LQ L Y +W+ A
Sbjct: 1 MKCISWNVNGLRAVFKKN---FMDVFNELDADFFCLQETKLQAGQIDLELPGYHQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K+ + V + L A ++ +GRVI E+ F+++ Y PN+ +
Sbjct: 58 EKKGYSGTAIFAKE--EALSVRYGLGIEA--HDQEGRVITLEYPEFFMVTCYTPNS--QA 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R W+ + ++ + + KP+I CGDLNV+H++ID+ +
Sbjct: 112 ELKRLAYRMTWEDAFRAYLNELNQEKPVILCGDLNVAHQKIDLKNW-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GFT ER++F +L G D +R+ + E + + WS + R
Sbjct: 158 -KTNQKNAGFTPEERQKFTELLDSG-FTDTFRYFYPEAEGIYSW-WSYRFNARKNNAGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYF+VSE L +R+++ ++ + GSDHCPV + L
Sbjct: 215 IDYFVVSESLNERLVSAKIHTDIL------GSDHCPVEVVL 249
>gi|449980965|ref|ZP_21817505.1| putative exodeoxyribonuclease III [Streptococcus mutans 5SM3]
gi|450134133|ref|ZP_21870968.1| putative exodeoxyribonuclease III [Streptococcus mutans NLML8]
gi|449149929|gb|EMB53710.1| putative exodeoxyribonuclease III [Streptococcus mutans NLML8]
gi|449176153|gb|EMB78512.1| putative exodeoxyribonuclease III [Streptococcus mutans 5SM3]
Length = 275
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 81/300 (27%), Positives = 135/300 (45%), Gaps = 50/300 (16%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQILMRALSSPP------- 88
+K ++WN +SL + ++ + +T D D++A+Q + P
Sbjct: 1 MKLISWNIDSLNAALTSDSARALLSRAVLDTLTEQDADILAIQETKLSAKGPTKKHLRIL 60
Query: 89 ---FKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEF 141
F +Y + W A YAGT L K QP +++ + +GR+I EF
Sbjct: 61 KDYFPDYDVVWRSSVEPARKGYAGTMFLYKSSLQPT-ITYPEIGAPATMDDEGRIITLEF 119
Query: 142 ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDV 200
+ F++ Y PN G + R+ WD++ ++ Q KP++ GD NV+H+EID+
Sbjct: 120 DDFFVTQVYTPNAG--DGLKRLDDRQIWDEKYAIYLAQLDKQKPVLATGDYNVAHKEIDL 177
Query: 201 SHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCG 260
+HP N+ PGFT ER F +L++G D +R++H D+
Sbjct: 178 AHPS------------SNRR---SPGFTDEERAGFTHLLEQG-FTDTFRYIH--GDVPNV 219
Query: 261 FSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
+SW + K RIDY+++S L D+I+ EM G DH P+ L++
Sbjct: 220 YSWWAQRSKTSKINNSGWRIDYWLISNRLSDKILKSEMIDSGTR------QDHTPILLKI 273
>gi|403366756|gb|EJY83183.1| Exodeoxyribonuclease III family protein [Oxytricha trifallax]
Length = 620
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 86/290 (29%), Positives = 136/290 (46%), Gaps = 44/290 (15%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ---ILMRALSSPPFKN-----YQ 93
L+ +WN N + +K N F +P ++ +Q I +++ K+ Y
Sbjct: 235 LQIWSWNVNGIRAILKKN--RIQEFFEQANPTILCVQESKIDEERMAADKVKDKFPADYL 292
Query: 94 IWWSLAD---SKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 150
+W+ YAGT + K K +S S + K++ +GR I EFE F+L+ Y
Sbjct: 293 QYWNCCKPPIKGYAGTIIFSK----IKPISVSYDIGVHKHDKEGRTITLEFEKFFLVGVY 348
Query: 151 APNNGWKEEENSFQRRRKWDKRIQEFV--LQCSGKPLIWCGDLNVSHEEIDVSHPEFFAA 208
PN+G + + + R +WD + ++ L+ GKP+I CGD+NV+H+EID+ P
Sbjct: 349 VPNSGATLKWHDY-RCSEWDLDFRAYLKGLERRGKPVILCGDMNVAHQEIDIFDP----- 402
Query: 209 AKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI 268
K + FT ER+ F K G +D +R L+ K + F W
Sbjct: 403 ----------KRNERMACFTNEERQSFSNFTKMG-FVDTFRELYPGK-IKYSF-WDIRDK 449
Query: 269 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
+ K R+DYF+VS ++K + E+ F+GSDHCPVSL L
Sbjct: 450 SRKENKGWRLDYFMVSRQIKHALTDAEIHNE------FWGSDHCPVSLTL 493
>gi|381395703|ref|ZP_09921398.1| exodeoxyribonuclease III [Glaciecola punicea DSM 14233 = ACAM 611]
gi|379328582|dbj|GAB56531.1| exodeoxyribonuclease III [Glaciecola punicea DSM 14233 = ACAM 611]
Length = 255
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 84/288 (29%), Positives = 138/288 (47%), Gaps = 45/288 (15%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ-------ILMRALSSPPFKNYQI 94
+K V+WN N + VK +F + D DV+ LQ ++ AL Y I
Sbjct: 1 MKLVSWNVNGIRAAVKK---DFLQSLAAMDCDVLCLQETKAQDEQVIEALCD--LHGYHI 55
Query: 95 WWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPN 153
+ + A K Y+GT+++ + +P V+ + + +++ +GRV+ AEF FYL+ Y PN
Sbjct: 56 FTNSAVKKGYSGTSVITR--VEPIDVTKDIGIS--EHDQEGRVLCAEFSDFYLVTVYTPN 111
Query: 154 NGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLN 212
+G E R +WD ++ KP++ CGDLN +H+++D++ P+
Sbjct: 112 SG--SELKRLGYRGQWDADFLTYIKALEAKKPVVICGDLNAAHKDLDLARPK-------- 161
Query: 213 GYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKY 271
PN G+T E ++ G ID++R +H + +S WS +
Sbjct: 162 ----PNYNK--SAGYTQQEIDGIDNLIAAG-FIDSFRHVHPDT---VKYSWWSYRAGARE 211
Query: 272 RGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
R RIDYF+VS L I E+ + +GSDHCPVS++L+
Sbjct: 212 RNVGWRIDYFLVSSALAANISDAEI------YDDIHGSDHCPVSVKLA 253
>gi|224137778|ref|XP_002322649.1| predicted protein [Populus trichocarpa]
gi|222867279|gb|EEF04410.1| predicted protein [Populus trichocarpa]
Length = 428
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 86/291 (29%), Positives = 141/291 (48%), Gaps = 41/291 (14%)
Query: 40 DPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQI--- 94
+ +K ++WN N L +K + DV+ LQ L + K I
Sbjct: 165 NSVKLMSWNVNGLRALLKFEGFSALELAQRENFDVLCLQETKLQASKDVDSIKQCLIDGY 224
Query: 95 ---WWSLADSK--YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNT 149
+W+ +++K Y+GTA++ + +P V + L ++ +GRV+ AEF++FYL+NT
Sbjct: 225 ENSFWTCSNAKLGYSGTAIVSR--IKPLSVCYGL--GIPDHDSEGRVVTAEFDSFYLVNT 280
Query: 150 YAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAA 208
Y PN+G + S+ R +WD + ++ + KP+I GDLN +H+EID+ +P A
Sbjct: 281 YVPNSGDGLKRLSY-RITQWDPSLSNYMKELEKSKPVILTGDLNCAHQEIDIFNP---AG 336
Query: 209 AKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNP 267
K + GFT ER+ FG+ L+D +R H G++ W
Sbjct: 337 NKRSA------------GFTEEERQSFGSNFLSKGLVDTFRKQHPNV---VGYTYWGYRH 381
Query: 268 IGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
G+ K R+DYF+VSE + D++ + + GSDHCP+ L L
Sbjct: 382 GGRKTNKGWRLDYFLVSESIADKVHDSYI------VPDVNGSDHCPIGLVL 426
>gi|451343821|ref|ZP_21912887.1| exodeoxyribonuclease III (xth) [Eggerthia catenaformis OT 569 = DSM
20559]
gi|449337396|gb|EMD16558.1| exodeoxyribonuclease III (xth) [Eggerthia catenaformis OT 569 = DSM
20559]
Length = 251
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 82/282 (29%), Positives = 133/282 (47%), Gaps = 36/282 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSP--PFKNYQIWWSLA 99
+ +WN N + + F + + D+ ALQ + F Y +++ A
Sbjct: 1 MLLASWNVNGIRACLTKG---FEDSFKKINADIFALQETKAQVDQIVLDFPEYHAFYNSA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+G A+L K +P V + ++ +++ +GRV+ EF+ FY + Y PN+ K
Sbjct: 58 VKKGYSGVAILTK--IKPNHVYYGIDIK--EHDQEGRVLTLEFDHFYFVGCYTPNS--KR 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R KW+ ++ + + KP+I CGDLNV+H+EID+ +P
Sbjct: 112 ELARLDYRMKWEDDFLAYLDKLNKTKPVILCGDLNVAHQEIDLKNPS------------- 158
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
+ GF+ ER++ +L G ID +R+ + ++ D WS + R R
Sbjct: 159 --SNHKNAGFSDEEREKMTQLLSHG-YIDTFRYFYPDQ-TDAYSWWSYMFKARERNAGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
IDYFI SE LKD++ + + GSDHCPV LE+S
Sbjct: 215 IDYFITSERLKDKLKDAYIYSDIL------GSDHCPVGLEIS 250
>gi|335031457|ref|ZP_08524893.1| exodeoxyribonuclease III [Streptococcus anginosus SK52 = DSM 20563]
gi|333769561|gb|EGL46670.1| exodeoxyribonuclease III [Streptococcus anginosus SK52 = DSM 20563]
Length = 275
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 84/300 (28%), Positives = 131/300 (43%), Gaps = 50/300 (16%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFSNFI----TTFDPDVIALQILMRALSSPP------- 88
+K ++WN +SL L + + S + D D+IA+Q + + P
Sbjct: 1 MKLISWNIDSLNAALTSDSARAQLSQAVLQTLVRLDADIIAIQETKLSANGPTKKHLKVL 60
Query: 89 ---FKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEF 141
F +Y+ W A YAGT L K+ PK ++F + +GR+I EF
Sbjct: 61 DELFPHYETTWRSSIEPARKGYAGTMFLYKENLSPK-ITFPEIGAPSTMDAEGRIITLEF 119
Query: 142 ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDV 200
E F++ Y PN G + + R+ WDK+ +++ KP++ GD NV+H EID+
Sbjct: 120 EKFFVTQVYTPNAG--DGLKRLEERQIWDKKYADYLTALDIEKPVLATGDYNVAHNEIDL 177
Query: 201 SHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCG 260
+HP N+ PGFT ER F +L G D +R++H D
Sbjct: 178 AHPS------------SNRR---SPGFTDEERSGFTNLLNRG-FTDTFRYIH--GDNPNV 219
Query: 261 FSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
+SW + K RIDY++ S + D++ EM G DH P+ LE+
Sbjct: 220 YSWWAQRSKTSKINNSGWRIDYWLTSNRIADKVTKSEMIDSGTR------QDHTPIVLEI 273
>gi|328767146|gb|EGF77197.1| hypothetical protein BATDEDRAFT_20862 [Batrachochytrium
dendrobatidis JAM81]
Length = 394
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 79/286 (27%), Positives = 138/286 (48%), Gaps = 36/286 (12%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQI---WWS 97
KF+ WN L +K + +I D DV+ LQ + +L + F Q +WS
Sbjct: 116 KFIAWNVAGLRASLKK---DMMRYIEAEDADVVCLQETKMNASLDTSMFSRKQYPHQYWS 172
Query: 98 LADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWK 157
+K + ++V +P V + + +A+ + +GR ++ E++ FY + Y N G
Sbjct: 173 HCTTKKGYSGVMVLSKVKPLSVEYKMGHSAI--DDEGRFVILEYQDFYYIGCYIMNAG-- 228
Query: 158 EEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVP 216
+ +R+ ++++F+ + S KP+IW GDLNV+H EID++ P
Sbjct: 229 ADLGRLDLKREHYVKLKKFMGELQSKKPVIWSGDLNVAHTEIDLARPA------------ 276
Query: 217 PNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLH-KEKDMDCGFSWSGNPIGKYRGKR 275
+ GFT ER+ FG +L + ++D++R H M +S+ N G
Sbjct: 277 ---TNTKSAGFTPEEREDFGNLLTDLDMVDSFRLKHPTATGMYSYYSFRHNSRANNVG-- 331
Query: 276 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEA 321
R+DYF+VS+ L+D II +++ E + SDH P+ L L+ +
Sbjct: 332 WRLDYFVVSKALQDDIIEADIRS-----EIYGASDHVPILLLLNRS 372
>gi|47087383|ref|NP_998586.1| DNA-(apurinic or apyrimidinic site) lyase [Danio rerio]
gi|33416367|gb|AAH55545.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Danio rerio]
Length = 310
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 82/299 (27%), Positives = 144/299 (48%), Gaps = 41/299 (13%)
Query: 30 ETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ-------ILMR 82
E + ++ + +K +WN + L VK N +++ DPD++ LQ L
Sbjct: 43 EKLTSKDGRAANMKITSWNVDGLRAWVKKNG---LDWVRKEDPDILCLQETKCAEKALPA 99
Query: 83 ALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEF 141
+++ P ++ W D + Y+G A+L K +P V++ + K +++ +GRVI AEF
Sbjct: 100 DITAMPEYPHKYWAGSEDKEGYSGVAMLCKT--EPLNVTYGIGKE--EHDKEGRVITAEF 155
Query: 142 ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDV 200
F+L+ Y PN R+ WD + ++ KPL+ CGDLNV+H+EID+
Sbjct: 156 PDFFLVTAYVPNA--SRGLVRLDYRKTWDVDFRAYLCGLDARKPLVLCGDLNVAHQEIDL 213
Query: 201 SHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCG 260
+P K + GFT ER+ F +L+ G D++R L+ ++
Sbjct: 214 KNP---------------KGNRKNAGFTPEEREGFTQLLEAG-FTDSFRELYPDQAYAYT 257
Query: 261 FSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
F W+ + + R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 258 F-WTYMMNARSKNVGWRLDYFVLSSALLPGLCDSKIRNTAM------GSDHCPITLFLA 309
>gi|403336088|gb|EJY67231.1| Exonuclease III [Oxytricha trifallax]
Length = 640
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 93/300 (31%), Positives = 142/300 (47%), Gaps = 44/300 (14%)
Query: 32 SSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILM---RALSSPP 88
+ E+ K D L WN N L + N F+ DPD++ + + S
Sbjct: 65 AKHEDFKSDQLNIWVWNINGLQAVI--NKGMLDVFLQGEDPDIVCFNEIKTDPEKIKSAS 122
Query: 89 F-----KNYQIWWSLADSK--YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEF 141
F K+Y+ +W+ + SK Y+GT L+ K +P KV+F + +++ +GRVI AEF
Sbjct: 123 FHTKIPKDYEQYWNCSKSKKGYSGTGLITK--IKPIKVTFDI--GIEEHDQEGRVITAEF 178
Query: 142 ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC---SGKPLIWCGDLNVSHEEI 198
F L+ Y PN+G S+ R ++WDK +++ + + KPLI GDLNV+ E+
Sbjct: 179 SKFVLVAVYVPNSGDDLRRLSY-RTQEWDKAFFDYLDRTRIETNKPLILTGDLNVARNEL 237
Query: 199 DVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMD 258
DV + K+ Y P ERK F + + G ID +R L+ +K
Sbjct: 238 DVFDTK--GKDKVACYTP-------------EERKSFESFINRG-YIDTFRHLYPDKREY 281
Query: 259 CGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
FS N K K RIDYF+V ++ D + ++ H + + GSDH PV L L
Sbjct: 282 TYFSARFN--NKVTNKGWRIDYFVVHQD--DINMVTDVTIH----KDYNGSDHVPVCLHL 333
>gi|222152632|ref|YP_002561807.1| exodeoxyribonuclease [Streptococcus uberis 0140J]
gi|222113443|emb|CAR41130.1| exodeoxyribonuclease [Streptococcus uberis 0140J]
Length = 275
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 83/300 (27%), Positives = 133/300 (44%), Gaps = 50/300 (16%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQILMRALSSPPFKNYQIW 95
+K ++WN +SL + P + + T DPD++A+Q + + P K+ +I
Sbjct: 1 MKLISWNIDSLNAALTGESPRALLSRAVLDTLVTEDPDILAIQETKLSATGPTKKHMEIL 60
Query: 96 WSL--------------ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEF 141
S A YAGT L + P V+F + +GR+I EF
Sbjct: 61 LSYFPNHLHVWRSSVEPARKGYAGTLFLYRNTLNPV-VTFPEIGAPDPMDAEGRIITLEF 119
Query: 142 ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDV 200
+ FY+ Y PN G ++ R++WD + E++ KP++ GD NV+H EID+
Sbjct: 120 DDFYVTQVYTPNAG--DQLRRLPERQEWDIKYAEYLASLDRNKPVLATGDYNVAHHEIDL 177
Query: 201 SHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCG 260
++P N+ GFT ER F A+L +G D +R+LH D+
Sbjct: 178 ANPA------------SNRR---SAGFTDEERAGFTALLAKG-FTDTFRYLH--GDIPNV 219
Query: 261 FSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
++W + K RIDY++ S + D++I EM G DH P+ LE+
Sbjct: 220 YTWWAQRSKTSKINNTGWRIDYWLTSNRIADKVIKSEMIHSGER------QDHTPILLEI 273
>gi|290562880|gb|ADD38834.1| DNA-apurinic or apyrimidinic site lyase [Lepeophtheirus salmonis]
Length = 317
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 98/313 (31%), Positives = 143/313 (45%), Gaps = 40/313 (12%)
Query: 14 AKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPD 73
KK SPS + + T+T ++ K LK +WN + +K S + T PD
Sbjct: 35 VKKETESPSDERPDCTQT--QKGKKSCNLKITSWNVAGVRAWIKKG--SLSYLLETEKPD 90
Query: 74 VIALQILMRALSSPP-----FKNY--QIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKT 126
+ LQ + + P K+Y Q W Y+G AL K +P V L+
Sbjct: 91 IFCLQETKCSETKIPCELKELKDYPHQFWAFAKKEGYSGVALFSK--VKPLDVQVGLQ-- 146
Query: 127 ALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQ-EFVLQCSGKPL 185
+ ++ +GR+I+AEFE F+LL TY PN G K + +R WD ++ + KP+
Sbjct: 147 SQDHDEEGRIIIAEFEFFFLLTTYVPNAGRKLV--TLDKRLDWDLLLRKKMKELNKKKPV 204
Query: 186 IWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLI 245
I GDLNV+H EID+++P K + GFT ER F +L G +
Sbjct: 205 IASGDLNVAHTEIDLANP---------------KTNQKNAGFTPEERAGFDDLLSLG-FV 248
Query: 246 DAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEG 305
D YR L+ EK F W+ + + R+DYF++S DR + I
Sbjct: 249 DTYRKLNPEKTGAYTF-WTYMMNARAKNVGWRLDYFLIS----DRWFESNVCDSVIR-SK 302
Query: 306 FYGSDHCPVSLEL 318
GSDHCP+SL L
Sbjct: 303 VLGSDHCPISLLL 315
>gi|319939581|ref|ZP_08013940.1| exodeoxyribonuclease III [Streptococcus anginosus 1_2_62CV]
gi|319811170|gb|EFW07476.1| exodeoxyribonuclease III [Streptococcus anginosus 1_2_62CV]
Length = 275
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 83/300 (27%), Positives = 130/300 (43%), Gaps = 50/300 (16%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFSNFI----TTFDPDVIALQILMRALSSPP------- 88
+K ++WN +SL L + + S + D D+IA+Q + + P
Sbjct: 1 MKLISWNIDSLNAALTSDSARAQLSQAVLQTLVRLDADIIAIQETKLSANGPTKKHLTIL 60
Query: 89 ---FKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEF 141
F NYQ+ W A YAGT L K P ++F + +GR+I EF
Sbjct: 61 EELFPNYQLTWRSSIDPARKGYAGTMFLYKNNLTPI-ITFPEIGAPSTMDAEGRIITLEF 119
Query: 142 ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDV 200
+ F++ Y PN G + R+ WD++ +++ KP++ GD NV+H EID+
Sbjct: 120 DNFFVTQVYTPNAG--DGLKRLVERQVWDQKYADYLTTLDEKKPVLATGDYNVAHNEIDL 177
Query: 201 SHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCG 260
+HP N+ PGFT ER F +L G D +R++H D+
Sbjct: 178 AHPS------------SNRR---SPGFTDEERSGFTNLLNRG-FTDTFRYIH--GDIPNV 219
Query: 261 FSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
+SW + K RIDY++ S + D++ EM G DH P+ LE+
Sbjct: 220 YSWWAQRSKTSKINNSGWRIDYWLTSNRIADKVTKSEMIDSGTR------QDHTPIVLEI 273
>gi|257437815|ref|ZP_05613570.1| exodeoxyribonuclease III [Faecalibacterium prausnitzii A2-165]
gi|257199738|gb|EEU98022.1| exodeoxyribonuclease III [Faecalibacterium prausnitzii A2-165]
Length = 263
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 83/286 (29%), Positives = 135/286 (47%), Gaps = 39/286 (13%)
Query: 38 KKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPF--KNYQIW 95
K+ +K ++WN N L + + +F+ D D+ ++Q F + Y +
Sbjct: 10 KEQDMKLISWNVNGLRACLTH---DFAASFAALDADIFSVQETKMQPGQADFAPEGYTEY 66
Query: 96 WSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNN 154
A+ K Y+GTA K P V+ + + +++ +GRV+ E+ FYL+N Y PN+
Sbjct: 67 TYSAEKKGYSGTACWCKTA--PLAVTTGIGRE--EHDHEGRVLTLEYPGFYLVNCYTPNS 122
Query: 155 GWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNG 213
++ R W+ + ++L+ K P+I CGDLNV+H EID+ + AK N
Sbjct: 123 --QDGLKRLDYRMTWEDAFRAYLLELDAKKPVILCGDLNVAHTEIDIKN------AKTNR 174
Query: 214 YVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYR 272
GFT ER + +L G D +R +H + + +S WS + +
Sbjct: 175 M---------SAGFTDQERAKMTELLAAG-FTDTFRAVHPD---EVKYSWWSYRFHAREK 221
Query: 273 GKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYFIVS + D++ A E+ +GSDHCPV L +
Sbjct: 222 NAGWRIDYFIVSNRIADKVTAAEIHNE------VFGSDHCPVELVI 261
>gi|162329921|pdb|2O3C|A Chain A, Crystal Structure Of Zebrafish Ape
gi|162329922|pdb|2O3C|B Chain B, Crystal Structure Of Zebrafish Ape
gi|162329923|pdb|2O3C|C Chain C, Crystal Structure Of Zebrafish Ape
Length = 282
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 82/299 (27%), Positives = 144/299 (48%), Gaps = 41/299 (13%)
Query: 30 ETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ-------ILMR 82
E + ++ + +K +WN + L VK N +++ DPD++ LQ L
Sbjct: 15 EKLTSKDGRAANMKITSWNVDGLRAWVKKNG---LDWVRKEDPDILCLQETKCAEKALPA 71
Query: 83 ALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEF 141
+++ P ++ W D + Y+G A+L K +P V++ + K +++ +GRVI AEF
Sbjct: 72 DITAMPEYPHKYWAGSEDKEGYSGVAMLCKT--EPLNVTYGIGKE--EHDKEGRVITAEF 127
Query: 142 ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDV 200
F+L+ Y PN R+ WD + ++ KPL+ CGDLNV+H+EID+
Sbjct: 128 PDFFLVTAYVPNA--SRGLVRLDYRKTWDVDFRAYLCGLDARKPLVLCGDLNVAHQEIDL 185
Query: 201 SHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCG 260
+P K + GFT ER+ F +L+ G D++R L+ ++
Sbjct: 186 KNP---------------KGNRKNAGFTPEEREGFTQLLEAG-FTDSFRELYPDQAYAYT 229
Query: 261 FSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
F W+ + + R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 230 F-WTYMMNARSKNVGWRLDYFVLSSALLPGLCDSKIRNTAM------GSDHCPITLFLA 281
>gi|329768092|ref|ZP_08259601.1| exodeoxyribonuclease III [Gemella haemolysans M341]
gi|328838247|gb|EGF87859.1| exodeoxyribonuclease III [Gemella haemolysans M341]
Length = 254
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 81/284 (28%), Positives = 137/284 (48%), Gaps = 38/284 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K +++N N L V N+ E D D LQ + F Y +++ A
Sbjct: 1 MKCISFNVNGLRAIVGKNFEED---FKKLDADFFCLQETKMQAGQLDLQFNGYYSYFNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K +P V++ + +++ +GRVI E++ F+ + Y PN+G
Sbjct: 58 ERKGYSGTAIYTKH--EPINVTYGI--GIEEHDTEGRVITLEYDKFFFITVYTPNSG--S 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E + R W++ + ++L+ + K ++ CGDLNV+H EID+ +P
Sbjct: 112 ELKRLEYRMSWEEDFKNYLLELNKTKGIVVCGDLNVAHTEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
K + GFT ER++F +L G ID +R+ + D+ +S WS +
Sbjct: 158 -KSNTKNAGFTQEEREKFTKLLDAG-FIDTFRYYN--PDLTGAYSWWSYRFNARKNNAGW 213
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 320
RIDYF+VS +L+ + + + +GSDHCPV L L +
Sbjct: 214 RIDYFLVSRDLEKYLESAAIHNE------IFGSDHCPVELVLKD 251
>gi|440793147|gb|ELR14342.1| exodeoxyribonuclease III, putative, partial [Acanthamoeba
castellanii str. Neff]
Length = 384
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 88/320 (27%), Positives = 136/320 (42%), Gaps = 71/320 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ-----------ILMRALSSPPFK 90
+K ++WN SL V+ ++I +PDV+ LQ + P
Sbjct: 89 VKLISWNVFSLNAIVEKG--SLQHYIKEEEPDVLCLQETKLTNSKIELFKGKTFHRPDIY 146
Query: 91 NYQIW-WSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNT 149
Y+ S A Y+G A+ K ++P +V + +++ +GRVI EF FYL+ +
Sbjct: 147 QYEFHNCSTAIKGYSGVAMYSK--YRPLRVHHGI--GVEEHDNEGRVITLEFAGFYLVGS 202
Query: 150 YAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS---------------------------- 181
Y PN+G +E + R++W++ ++ ++L S
Sbjct: 203 YIPNSG--DELKRLEYRQRWNRDMEAYLLSLSTSGLKAGLDVHPHGHELEYRVLDESERK 260
Query: 182 GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 241
GKP+IWCGDLNV+HEEID+ P N Y GFT ER F ++K
Sbjct: 261 GKPVIWCGDLNVAHEEIDLHDPAN------NHYT---------SGFTDEERDDFTRVIKT 305
Query: 242 GRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGI 301
+D+YR H+ WS + R R+DYF+ L + ++ +
Sbjct: 306 MDFVDSYR--HENPTRQSYSFWSYRSAARARNMGWRLDYFLYQRALTPYVRKAFIRNFVL 363
Query: 302 ELEGFYGSDHCPVSLELSEA 321
GSDHCPV L L A
Sbjct: 364 ------GSDHCPVGLLLDPA 377
>gi|319954545|ref|YP_004165812.1| exodeoxyribonuclease iii xth [Cellulophaga algicola DSM 14237]
gi|319423205|gb|ADV50314.1| exodeoxyribonuclease III Xth [Cellulophaga algicola DSM 14237]
Length = 254
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 81/289 (28%), Positives = 140/289 (48%), Gaps = 47/289 (16%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQI-------LMRALSSPPFKNYQI 94
+ V+WN N + VK +F + T PD++ LQ + +AL S N+ +
Sbjct: 1 MHIVSWNVNGIRAAVK---KDFFEAVKTMAPDILCLQETKAQDSEVAKALES--LSNFSL 55
Query: 95 WWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPN 153
+ AD K Y+GTA+L K+ + +E ++ +GR++ E+++FYL+N Y PN
Sbjct: 56 NSNSADKKGYSGTAILSKQAPISATPNMGIEV----HDTEGRILCTEYDSFYLVNVYVPN 111
Query: 154 NGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLN 212
+G K + + R++WDK ++ KP+I CGD NV+H+ ID+ +
Sbjct: 112 SGQKLDR--LEYRQQWDKDFLAYLKNLEKKKPVIACGDFNVAHQAIDLKN---------- 159
Query: 213 GYVPPNKEDWGQ-PGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGK 270
+K ++ + G+T E + +D++R LH + + ++ WS +
Sbjct: 160 -----DKANYNKTAGYTQIEIDGMDNFIAND-FVDSFRALHPD---EVAYTFWSYRFKSR 210
Query: 271 YRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
R RIDYF+VS+ + D+I + GSDHCP+ + LS
Sbjct: 211 ERNTGWRIDYFLVSKAIADKIKKVTIYA------DIMGSDHCPIGITLS 253
>gi|291545257|emb|CBL18366.1| exodeoxyribonuclease III [Ruminococcus champanellensis 18P13]
Length = 256
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 90/281 (32%), Positives = 126/281 (44%), Gaps = 40/281 (14%)
Query: 42 LKFVTWNANSL-LLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSL 98
+K ++WN N L R K F F D D +Q L Y +W
Sbjct: 1 MKLISWNVNGLRACREKG----FEAFFAQEDADFFCIQETKLQAGQIQLELPGYNQYWHY 56
Query: 99 ADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWK 157
AD K Y+GTA+ K + F L + +GRV+ E+ FYL+N Y PN+ K
Sbjct: 57 ADKKGYSGTAVFTKHIPLSVQRDFGLPA----HNGEGRVLTLEYPDFYLVNAYVPNS--K 110
Query: 158 EEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVP 216
E R +W+ +++++L KP+I+CGDLNV+H EID+ +P
Sbjct: 111 RELLRLDYRMEWEDALRQYLLGLDARKPVIYCGDLNVAHREIDLKNP------------- 157
Query: 217 PNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKR 275
K + GFT ER R +L G D +R L+ D ++ WS + +
Sbjct: 158 --KSNRRNAGFTDEERGRLSTLLDSG-FTDTFRLLY--PDTAGAYTWWSYMFHAREKNAG 212
Query: 276 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
RIDYFIVS IA +Q I + GSDHCPV L
Sbjct: 213 WRIDYFIVSNR-----IAPLVQDSLI-YKDVLGSDHCPVGL 247
>gi|403374064|gb|EJY86966.1| Exonuclease III [Oxytricha trifallax]
Length = 628
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 93/300 (31%), Positives = 142/300 (47%), Gaps = 44/300 (14%)
Query: 32 SSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILM---RALSSPP 88
+ E+ K D L WN N L + N F+ DPD++ + + S
Sbjct: 65 AKHEDFKSDQLNIWVWNINGLQAVI--NKGMLDVFLQGEDPDIVCFNEIKTDPEKIKSAS 122
Query: 89 F-----KNYQIWWSLADSK--YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEF 141
F K+Y+ +W+ + SK Y+GT L+ K +P KV+F + +++ +GRVI AEF
Sbjct: 123 FHTKIPKDYEQYWNCSKSKKGYSGTGLITK--IKPIKVTFDI--GIEEHDQEGRVITAEF 178
Query: 142 ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC---SGKPLIWCGDLNVSHEEI 198
F L+ Y PN+G S+ R ++WDK +++ + + KPLI GDLNV+ E+
Sbjct: 179 SKFVLVAVYVPNSGDDLRRLSY-RTQEWDKAFFDYLDRTRIETNKPLILTGDLNVARNEL 237
Query: 199 DVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMD 258
DV + K+ Y P ERK F + + G ID +R L+ +K
Sbjct: 238 DVFDTK--GKDKVACYTP-------------EERKSFESFINRG-YIDTFRHLYPDKREY 281
Query: 259 CGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
FS N K K RIDYF+V ++ D + ++ H + + GSDH PV L L
Sbjct: 282 TYFSARFN--NKVTNKGWRIDYFVVHQD--DINMVTDVTIH----KDYNGSDHVPVCLHL 333
>gi|384247332|gb|EIE20819.1| hypothetical protein COCSUDRAFT_18358, partial [Coccomyxa
subellipsoidea C-169]
Length = 246
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 82/252 (32%), Positives = 123/252 (48%), Gaps = 37/252 (14%)
Query: 71 DPDVIALQILMRALSSPPFKNYQIWW--SLADSKYAGTALLVKKCFQPKKVSFSLEKTAL 128
D DV A + L+R P +++ ++ S+A Y+G A+L + +P V+ L K
Sbjct: 22 DSDVAACEKLLR----PGLQDWHFYFNNSIAKKGYSGVAVLSRA--KPLSVTNGLGKE-- 73
Query: 129 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIW 187
++ +GRVI AE+ +FY++N Y PN+G + + R WD +++ KP+I
Sbjct: 74 DHDQEGRVITAEYPSFYVVNVYVPNSGEGLKRLEY-RVGSWDVAFADYLAGLGAKKPVIL 132
Query: 188 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 247
GDLN +H+EID+ P K + GFT ERK F A L + D
Sbjct: 133 TGDLNCAHQEIDIHDP---------------KRNLKSAGFTEEERKSFSAQLLQRGFKDT 177
Query: 248 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGI-ELEGF 306
+R K D+ W+ + R + R+DYF+VSE L +R+ H I L
Sbjct: 178 FR--EKYPDVVGYTYWNYRTGARVRNRGWRLDYFLVSEALAERV-------HDIFHLPDV 228
Query: 307 YGSDHCPVSLEL 318
GSDHCPV L L
Sbjct: 229 QGSDHCPVGLVL 240
>gi|317374848|sp|A0MTA1.1|APEX1_DANRE RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; Short=zAP1
gi|117549778|gb|ABK35081.1| apurinic/apyrimidinic endonuclease 1 [Danio rerio]
gi|117549788|gb|ABK35082.1| apurinic/apyrimidinic endonuclease 1 [Danio rerio]
gi|117549790|gb|ABK35083.1| apurinic/apyrimidinic endonuclease 1 [Danio rerio]
gi|117549792|gb|ABK35084.1| apurinic/apyrimidinic endonuclease 1 [Danio rerio]
Length = 310
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 82/299 (27%), Positives = 143/299 (47%), Gaps = 41/299 (13%)
Query: 30 ETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ-------ILMR 82
E + ++ + +K +WN + L VK N +++ DPD++ LQ L
Sbjct: 43 EKLTSKDGRAANMKITSWNVDGLRAWVKKNG---LDWVRKEDPDILCLQETKCAEKALPA 99
Query: 83 ALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEF 141
++ P ++ W D + Y+G A+L K +P V++ + K +++ +GRVI AEF
Sbjct: 100 DITGMPEYPHKYWAGSEDKEGYSGVAMLCKT--EPLNVTYGIGKE--EHDKEGRVITAEF 155
Query: 142 ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDV 200
F+L+ Y PN R+ WD + ++ KPL+ CGDLNV+H+EID+
Sbjct: 156 PDFFLVTAYVPNA--SRGLVRLDYRKTWDVDFRAYLCGLDARKPLVLCGDLNVAHQEIDL 213
Query: 201 SHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCG 260
+P K + GFT ER+ F +L+ G D++R L+ ++
Sbjct: 214 KNP---------------KGNRKNAGFTPEEREGFTQLLEAG-FTDSFRELYPDQAYAYT 257
Query: 261 FSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
F W+ + + R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 258 F-WTYMMNARSKNVGWRLDYFVLSSALLPGLCDSKIRNTAM------GSDHCPITLFLA 309
>gi|169347307|ref|ZP_02866245.1| hypothetical protein CLOSPI_00022 [Clostridium spiroforme DSM 1552]
gi|169293924|gb|EDS76057.1| exodeoxyribonuclease III [Clostridium spiroforme DSM 1552]
Length = 252
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 81/282 (28%), Positives = 135/282 (47%), Gaps = 38/282 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPFKN--YQIWWSLA 99
+K ++WN N + + F + + FD D+ +Q ++ Y ++ + A
Sbjct: 1 MKLISWNVNGIRACINKG---FYDILKDFDADIFCIQETKMQEGQIEIEDHGYYLYMNSA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
K Y+GT + K K +S+S +++ +GRVI E+ FYL+N Y PN+ ++
Sbjct: 58 VKKGYSGTLVFTK----VKPLSYSYGINIEEHDQEGRVITLEYNKFYLVNCYTPNS--QD 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
+ R+ W+ ++ KP+I CGDLNV+H+EID+ +P
Sbjct: 112 GLKRLEYRQVWEDDFLAYLKSLEEKKPVILCGDLNVAHQEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
K + GF+ ER + +L G ID +R+L+ D+ +S WS +
Sbjct: 158 -KTNRKNAGFSDEERAKMTQLLNHG-FIDTFRYLY--PDLQGAYSWWSYRFNARKNNAGW 213
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYFIVS+ LK++I + + GSDHCPV L++
Sbjct: 214 RIDYFIVSDCLKEKIKDAYI------FKDIMGSDHCPVGLDI 249
>gi|399215902|emb|CCF72590.1| unnamed protein product [Babesia microti strain RI]
Length = 459
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 90/268 (33%), Positives = 133/268 (49%), Gaps = 40/268 (14%)
Query: 84 LSSPPFKNYQIWWSLADSKYAGTALLVKKCFQ--------PKKVSFSL--EKTALKYEPD 133
L FK Y++ SLA + G +L+KK F PK++ ++L ++ A + +
Sbjct: 191 LMKTSFKKYKVIHSLASWRVRGQMILLKKSFTVSNSTFILPKRIRYNLNIKQNAKYHNHE 250
Query: 134 GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG--KPLIWCGDL 191
GRV++ EF++FYL++ P NGW E S ++R+KWD + F L+ S K +I G+L
Sbjct: 251 GRVVIIEFDSFYLMSLITPGNGWITE--SIKQRKKWDLELTTF-LKASKYIKAVIMVGNL 307
Query: 192 NVSHEEIDVSHPEFFAAAKL-NGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 250
N S E+IDVS+P AA KL V +E G PG +R F LK G L D YRF
Sbjct: 308 NCSPEDIDVSNP---AALKLEKTAVLHEEEQHGYPGTREVDRNGFEETLKAGDLWDVYRF 364
Query: 251 LH------KEKDMDCGFSWSGNP----IGK------YRGKR----MRIDYFIVSEELKDR 290
++ E D + S + NP IG G + +R ++S +
Sbjct: 365 MNPVEVEESESDSNALASTAKNPKYTSIGTGAIYLVQTGDKCKCAVRTTLALMSTKFLRN 424
Query: 291 IIACEMQGHGIELEGFYGSDHCPVSLEL 318
I +CE+ G +L+ F G H PV L L
Sbjct: 425 IKSCEILGTMADLKPF-GWRHLPVGLTL 451
>gi|366086404|ref|ZP_09452889.1| exodeoxyribonuclease III [Lactobacillus zeae KCTC 3804]
Length = 252
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 87/283 (30%), Positives = 132/283 (46%), Gaps = 45/283 (15%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ-ILMRA----LSSPPFKNYQIWW 96
+K ++WN N L +K +F D D LQ M+A L P + Y +
Sbjct: 1 MKLISWNVNGLRAVLKK---DFMTIFNELDADWFCLQETKMQAGQVKLDLPGYYQY---F 54
Query: 97 SLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNG 155
+ A+ K Y+GTA+ K +P V++ + +++ +GR+I E+ FYL+ Y PN+G
Sbjct: 55 NYAERKGYSGTAIFTKH--EPLNVTYGM--GIPEHDKEGRIITLEYPKFYLMTVYTPNSG 110
Query: 156 WKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY 214
E R++WDK + + Q + KPL++CGDLNV+HE ID+ +
Sbjct: 111 --GELKRLDYRQQWDKDFRAYTNQLAEKKPLVYCGDLNVAHEPIDLKN------------ 156
Query: 215 VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRG 273
+K + GFT ER F LK G ID +R L+ +S WS +
Sbjct: 157 ---DKTNHHNAGFTDEERADFTKQLKSG-FIDTFRHLYPNT---VTYSWWSYRFHARANN 209
Query: 274 KRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
RIDYF+ S + + ++ L GSDHCPV L
Sbjct: 210 AGWRIDYFVASSNFQPYVKDAKI------LTDVMGSDHCPVEL 246
>gi|420148029|ref|ZP_14655302.1| Exodeoxyribonuclease III [Lactobacillus gasseri CECT 5714]
gi|398400376|gb|EJN53933.1| Exodeoxyribonuclease III [Lactobacillus gasseri CECT 5714]
Length = 275
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 82/301 (27%), Positives = 135/301 (44%), Gaps = 50/301 (16%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQILMRALSSPPFKNYQIW 95
++ ++WN +SL + ++ N I DPD+IA+Q + P K+ +I
Sbjct: 1 MRLISWNIDSLNAALTSDSARAKLTRGVLNTIKEKDPDIIAIQETKLRATGPTKKHQEIL 60
Query: 96 WSL--------------ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEF 141
+ A YAGT L K P+ V+ + + +GR++ EF
Sbjct: 61 VEMFPDYDYVWRSSEEPARKGYAGTMFLYKNTLTPE-VTKPVIGAPEPMDHEGRILTLEF 119
Query: 142 ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDV 200
+ +Y+ Y PN+G E R+ WD++ E++ + KP+I GD NV+H ID+
Sbjct: 120 DNYYVTQVYTPNSG--NELKRLDDRQVWDEKYTEYLQKLDQVKPVIASGDYNVAHTPIDL 177
Query: 201 SHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCG 260
HPE + GFT ER+ F +LK G D +R +H +++
Sbjct: 178 KHPE---------------NNHHNAGFTDEERQDFDKLLKLG-FTDTFRKIH--GNVEGV 219
Query: 261 FSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
+SW + K RIDY+IVS + +++ EM L+ DHCP+ LE+
Sbjct: 220 YSWWAQRVRTSKANNSGWRIDYYIVSNRIANQVTKSEM------LDTGERKDHCPIMLEI 273
Query: 319 S 319
+
Sbjct: 274 N 274
>gi|313891277|ref|ZP_07824895.1| exodeoxyribonuclease III [Streptococcus pseudoporcinus SPIN 20026]
gi|416852294|ref|ZP_11909439.1| exodeoxyribonuclease III [Streptococcus pseudoporcinus LQ 940-04]
gi|313120344|gb|EFR43465.1| exodeoxyribonuclease III [Streptococcus pseudoporcinus SPIN 20026]
gi|356739783|gb|EHI65015.1| exodeoxyribonuclease III [Streptococcus pseudoporcinus LQ 940-04]
Length = 275
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 84/300 (28%), Positives = 135/300 (45%), Gaps = 50/300 (16%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQILMRALSSPP------- 88
+K ++WN +SL + P + + + D D+IA+Q + + P
Sbjct: 1 MKLISWNIDSLNAALTGESPRALLSRAVIDRLVSEDADIIAIQETKLSATGPTKKHLETI 60
Query: 89 ---FKNY-QIWWSL---ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEF 141
F NY +W S A YAGT L K+ P V+F + +GR+I EF
Sbjct: 61 LSYFPNYLHVWRSSVEPARKGYAGTMFLYKQTLNPV-VTFPEIGAPTTMDSEGRIITLEF 119
Query: 142 ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDV 200
E F++ Y PN G + R++WD + +++ Q KP++ GD NV+H+EID+
Sbjct: 120 EDFFVTQVYTPNAG--DGLRRLADRQEWDIKYADYLTQLDAQKPVLATGDYNVAHKEIDL 177
Query: 201 SHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCG 260
++P N+ GFT ER F A+L++G D +R LH D+
Sbjct: 178 ANPS------------SNRR---SAGFTDEERAGFTALLEKG-FTDTFRHLH--GDLPNV 219
Query: 261 FSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
++W + K RIDY++ S + D+++ EM G DH P+ LE+
Sbjct: 220 YTWWAQRSKTSKMNNTGWRIDYWLTSNRIADKVLKSEMIDSGAR------QDHTPILLEI 273
>gi|241888975|ref|ZP_04776279.1| exodeoxyribonuclease III [Gemella haemolysans ATCC 10379]
gi|241864224|gb|EER68602.1| exodeoxyribonuclease III [Gemella haemolysans ATCC 10379]
Length = 254
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 81/284 (28%), Positives = 137/284 (48%), Gaps = 38/284 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K +++N N L V N+ E D D LQ + F Y +++ A
Sbjct: 1 MKCISFNVNGLRAIVGKNFEED---FKQLDADFFCLQETKMQAGQLDLQFDGYYSYFNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ K +P V++ + +++ +GRVI E++ F+ + Y PN+G
Sbjct: 58 ERKGYSGTAIYTKH--EPLNVTYGI--GIEEHDTEGRVITLEYDKFFFITVYTPNSG--S 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E + R W++ + ++L + K ++ CGDLNV+H EID+ +P
Sbjct: 112 ELKRLEYRMSWEEDFKNYLLALNKTKGVVVCGDLNVAHTEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
K + GFT ER++F +L G ID +R+ + D+ +S WS +
Sbjct: 158 -KSNMKNAGFTPEEREKFTKLLDAG-FIDTFRYYN--PDLTGAYSWWSYRFNARKNNAGW 213
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 320
RIDYF+VS +L++ + + + +GSDHCPV L L +
Sbjct: 214 RIDYFLVSRDLEEYLESAAIHNE------IFGSDHCPVELVLKD 251
>gi|297569473|ref|YP_003690817.1| exodeoxyribonuclease III Xth [Desulfurivibrio alkaliphilus AHT2]
gi|296925388|gb|ADH86198.1| exodeoxyribonuclease III Xth [Desulfurivibrio alkaliphilus AHT2]
Length = 490
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 85/285 (29%), Positives = 130/285 (45%), Gaps = 39/285 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPP-----FKNYQIWW 96
L+ +WN N L K + E + D D++A+Q + P YQ +W
Sbjct: 238 LRLASWNVNGLRAIAKKGFAELAG---ELDADLLAIQEIKAHPDQLPAEARALPGYQAFW 294
Query: 97 SLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNG 155
A K Y+G A+ + +P KV + + + KYE +GRV+ EF F+L+N Y PN
Sbjct: 295 LPAKRKGYSGVAIYSR--LEPLKVLYGMGQEE-KYEQEGRVLTMEFADFFLVNAYLPNA- 350
Query: 156 WKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY 214
+ E + + + Q+F + K ++ CGDLNV+H EID++ P+
Sbjct: 351 -QPELARLPFKLDFCRHFQQFCENLATQKNVVVCGDLNVAHREIDLARPQ---------- 399
Query: 215 VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGK 274
E+ PGF+ AER L G D +R ++E +S+ G + R
Sbjct: 400 -----ENQQSPGFSPAERAWLDGFLANG-FTDTFRLFNQEGGNYTWWSYRGG--ARQRNV 451
Query: 275 RMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
RIDYF + + R+ + GI E GSDHCPV+L L
Sbjct: 452 GWRIDYFCIDSAGRRRV-----REAGIRPE-IMGSDHCPVTLTLG 490
>gi|170088468|ref|XP_001875457.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650657|gb|EDR14898.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 343
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 85/294 (28%), Positives = 139/294 (47%), Gaps = 34/294 (11%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIAL-QILMRALSSPPFKNYQI---WWS 97
++ TWN L K F ++ DPD++ L + + + + P + +WS
Sbjct: 63 VRLATWNICGLAASQKKG---FKYYVEAEDPDILVLTETKVNDVPNDPALTKRFPYAYWS 119
Query: 98 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 156
++ K Y+GTA+L K +P V+ L GR+I EFE FY++ TY N G
Sbjct: 120 ISSKKSYSGTAILSKH--EPLSVTRVLPGHPDPSHVKGRIITLEFENFYVVGTYVVNAG- 176
Query: 157 KEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDV--SH---PEFFAAAK 210
+ + +++W+ ++ S KP+IW GDLNV+ E+ + +H P AA
Sbjct: 177 -TDLKTLDEKKEWNVHFDAYIRDLDSKKPVIWTGDLNVAPTEMGMYCNHPFGPRLITAAD 235
Query: 211 LNGYVPPNKEDWGQPGFTIAERKRFGAILKE------GRLIDAYRFLHKEKDMDCGFSWS 264
L P K+ G+T AE F IL + +D +R LH E FS+
Sbjct: 236 LAN---PKKKWNKTAGYTEAETTAFRKILASPDDISANKFVDVWRQLHPEDRHYTYFSYR 292
Query: 265 GNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
N + +G R+D F++SE + +R+ CE++ E + SDHCP+ +E+
Sbjct: 293 FN--CRTKGLGWRLDMFVLSERMMERVKMCEIRS-----EIYGASDHCPLVMEI 339
>gi|440780818|ref|ZP_20959289.1| exodeoxyribonuclease III [Clostridium pasteurianum DSM 525]
gi|440221406|gb|ELP60611.1| exodeoxyribonuclease III [Clostridium pasteurianum DSM 525]
Length = 254
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 87/285 (30%), Positives = 139/285 (48%), Gaps = 41/285 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ---ILMRALSS--PPFKNYQIWW 96
+K +WN N L K + EF ++ +PD++ +Q + + LS K Y ++
Sbjct: 1 MKIYSWNVNGLRAVSKKGFFEF---VSYENPDILCIQETKLQLETLSEELKNIKEYYSYF 57
Query: 97 SLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNG 155
S A+ K Y+G A KK K VS K++ +GR+++ EF F L N Y P NG
Sbjct: 58 SFAERKGYSGVATYTKK----KPVSIKHGIGIEKFDKEGRILITEFNEFILFNIYFP-NG 112
Query: 156 WKEEENSFQRRRKWDKRIQEF-VLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY 214
K+EE + +D + L+ K +I CGD N++H EID+ + + A K++G+
Sbjct: 113 QKDEERLNYKLEFYDALFEYLDKLKIEDKKIIICGDYNIAHREIDIKNAK--ANEKISGF 170
Query: 215 VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRG 273
+P ERK + +G +D +R +H+E + +S WS + R
Sbjct: 171 LP-------------IERKLIDKFISKG-YVDTFRSIHRE---EIKYSWWSYRFKARERN 213
Query: 274 KRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF+V+E L + + ++ L GSDHCPVS+ L
Sbjct: 214 AGWRIDYFLVTENLLENVKEADI------LNDVMGSDHCPVSILL 252
>gi|402835045|ref|ZP_10883630.1| exodeoxyribonuclease III [Selenomonas sp. CM52]
gi|402276400|gb|EJU25510.1| exodeoxyribonuclease III [Selenomonas sp. CM52]
Length = 250
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 82/282 (29%), Positives = 133/282 (47%), Gaps = 36/282 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
++FV+WN N L + F D DV +Q + + Y+ +W+ A
Sbjct: 1 MRFVSWNVNGLRACLGKG---FMQSFKALDADVFGVQETKMQPEQAILELTGYKQYWNSA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ + +P VS+ L +++ +GRVI EF+ Y + Y PN+
Sbjct: 58 EKKGYSGTAVFSR--IEPLSVSYGLGIE--EHDHEGRVIALEFDDLYFVTVYTPNSQRGL 113
Query: 159 EENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E ++ R W++ ++++L K P++ CGDLNV+H EID+ +P
Sbjct: 114 ERLAY--RMTWEEAFRDYLLTLDAKKPVVVCGDLNVAHTEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GFT ER++ +L+ G D +R L+ +K + WS + R
Sbjct: 158 -KTNRKNAGFTDEEREKMTELLQAG-FTDTFRALYPDKTGIYTW-WSYLRKARETNAGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
IDYF+VS+ L +I + +GSDHCPV L L
Sbjct: 215 IDYFLVSDRLAPKIKEATIHNE------VFGSDHCPVGLVLG 250
>gi|418965268|ref|ZP_13517046.1| putative exodeoxyribonuclease III [Streptococcus constellatus
subsp. constellatus SK53]
gi|383342863|gb|EID21064.1| putative exodeoxyribonuclease III [Streptococcus constellatus
subsp. constellatus SK53]
Length = 275
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 83/300 (27%), Positives = 131/300 (43%), Gaps = 50/300 (16%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFSNFI----TTFDPDVIALQILMRALSSPP------- 88
+K ++WN +SL L + + S + D D+IA+Q + + P
Sbjct: 1 MKLISWNIDSLNAALTSDSARAQLSQAVLQTLVGLDADIIAIQETKLSANGPTKKHLKVL 60
Query: 89 ---FKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEF 141
F +Y+ W A YAGT L K+ PK ++F + +GR+I EF
Sbjct: 61 DELFPHYETTWRSSIEPARKGYAGTMFLYKENLSPK-ITFPEIGAPSTMDSEGRIITLEF 119
Query: 142 ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDV 200
+ F++ Y PN G + R+ WDK+ +++ KP++ GD NV+H EID+
Sbjct: 120 DNFFVTQVYTPNAG--DGLKRLVERQVWDKKYADYLTALDIEKPVLATGDYNVAHNEIDL 177
Query: 201 SHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCG 260
+HP N+ PGFT ER F +L G D +R++H D+
Sbjct: 178 AHPS------------SNRR---SPGFTDEERSGFTNLLNRG-FTDTFRYIH--GDIPNV 219
Query: 261 FSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
+SW + K RIDY++ S + D++ EM G DH P+ LE+
Sbjct: 220 YSWWAQRSKTSKINNSGWRIDYWLTSNRIADKVTKSEMIDSGTR------QDHTPIVLEI 273
>gi|169837263|ref|ZP_02870451.1| exonuclease III [candidate division TM7 single-cell isolate TM7a]
Length = 267
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 91/296 (30%), Positives = 140/296 (47%), Gaps = 52/296 (17%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQIL-----MRALSSPPFKNYQIWW 96
++ +WN N + +K F FI+ + PD++ LQ + P + ++IW
Sbjct: 3 MRLYSWNVNGIRAVIKKG--TFLPFISEYQPDILCLQETKAKKNQVEIDLPDY--FEIWN 58
Query: 97 SLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPD----------GRVILAEFETFYL 146
S + Y+GTA+ K + F E KY D GR+I AEF+ F +
Sbjct: 59 SAERAGYSGTAIFSKAKPLNTWLDFP-EDIVKKYNLDQDDYGNPNNEGRIIAAEFDNFIV 117
Query: 147 LNTYAPNNGWKEEENSFQ-RRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPE 204
Y PN+ K + + Q R +KWDK E++ + S KP+++CGDLNV+H E D+++P
Sbjct: 118 ATVYTPNS--KGDLSRLQLRHQKWDKAWLEYMKKLESIKPVLFCGDLNVAHTEDDLANP- 174
Query: 205 FFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-- 262
K + G+ GFT ER F A ++ G D +R K G+
Sbjct: 175 --------------KPNIGKHGFTNEERAGFDAFIQSG-FKDTFRIFTKGN----GYYSW 215
Query: 263 WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
W+ + R RIDY++ SE+L ++I E Q H GSDHCPVS+ +
Sbjct: 216 WTHWANARARNIGWRIDYWLASEKLANKI--TEAQIH----PDIMGSDHCPVSVTI 265
>gi|428184721|gb|EKX53575.1| apurinic/apyrimidinic endonuclease family member in base excision
repair [Guillardia theta CCMP2712]
Length = 447
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 94/337 (27%), Positives = 146/337 (43%), Gaps = 82/337 (24%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQIL------------MRALSSPPFK 90
K V+WN ++ +K N + PD+I Q M P +
Sbjct: 132 KIVSWNVTTIRSLMKKNPELLKKLMEQEQPDLICFQETKLKQEEHDEYEEMLKSQFPGDQ 191
Query: 91 NYQIWWS--LADSKYAGTALLVKKCFQ-------------------------------PK 117
Y+ +S L++ YAGT +LV+ P
Sbjct: 192 GYEAHFSSSLSNKSYAGTLVLVRSSKDKATAQKQTKMDSFFKGKDSKSAKKDEETACPPL 251
Query: 118 KVSFSLE-------KTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWD 170
KV+F L + A + +GR I EFE+F+++ TY PN+G K + F R + WD
Sbjct: 252 KVTFGLSTLSKDDGEIAAEVIQEGRTITVEFESFFVVATYVPNSGEKLQRLEF-RTKLWD 310
Query: 171 KRIQEFV--LQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFT 228
+++ E++ L+ SGKP+IWCGDLNV+H + D+ + K G P
Sbjct: 311 RKVVEYLKKLEASGKPVIWCGDLNVAHLDNDIWNVGAKHLVKSAGTTPE----------- 359
Query: 229 IAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEEL 287
ER F IL+EG +D +R LH E D FS WS + + +R+DYF+ S+ L
Sbjct: 360 --ERDSFSKILEEG-YVDCFRHLHGE-DAKGWFSYWSVRAGNRPWNRGLRLDYFVASKSL 415
Query: 288 --KD---RIIACEMQGHGIELEGFYGSDHCPVSLELS 319
+D R++ ++ + F DH +SL L+
Sbjct: 416 CSQDSLPRVVDADIH------DEFVAIDHAAISLTLA 446
>gi|167957331|ref|ZP_02544405.1| exonuclease III [candidate division TM7 single-cell isolate TM7c]
Length = 265
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 90/294 (30%), Positives = 139/294 (47%), Gaps = 48/294 (16%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQIL-----MRALSSPPFKNYQIWW 96
++ +WN N + +K F FI+ + PD++ LQ + P + ++IW
Sbjct: 1 MRLYSWNVNGIRAVIKKG--TFLPFISEYQPDILCLQETKAKKNQVEIDLPDY--FEIWN 56
Query: 97 SLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPD----------GRVILAEFETFYL 146
S + Y+GTA+ K + F E KY D GR+I AEF+ F +
Sbjct: 57 SAERAGYSGTAIFSKAKPLNTWLDFP-EDIVKKYNLDQDDYGNPNNEGRIIAAEFDNFIV 115
Query: 147 LNTYAPNNGWKEEENSFQ-RRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPE 204
Y PN+ K + + Q R +KWDK E++ + S KP+++CGDLNV+H E D+++P
Sbjct: 116 ATVYTPNS--KGDLSRLQLRHQKWDKAWLEYMKKLESIKPVLFCGDLNVAHTEDDLANP- 172
Query: 205 FFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWS 264
K + G+ GFT ER F A ++ G D +R K ++
Sbjct: 173 --------------KPNIGKHGFTNEERAGFDAFIQSG-FKDTFRIFTKGNGYYSWWTHW 217
Query: 265 GNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
N + R RIDY++ SE+L ++I E Q H GSDHCPVS+ +
Sbjct: 218 AN--ARARNIGWRIDYWLASEKLANKI--TEAQIH----PDIMGSDHCPVSVTI 263
>gi|296880312|ref|ZP_06904277.1| exodeoxyribonuclease III, partial [Clostridium difficile NAP07]
gi|296428755|gb|EFH14637.1| exodeoxyribonuclease III [Clostridium difficile NAP07]
Length = 181
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 108/205 (52%), Gaps = 28/205 (13%)
Query: 115 QPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQ 174
+P KV + + +++ +GRVI EFE FY + Y PN+ + E + R +W+
Sbjct: 3 EPLKVMYGI--NIEEHDKEGRVITLEFEDFYFVTVYTPNS--QSELKRLEYRTRWEDDFI 58
Query: 175 EFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERK 233
+++ + KP+I CGD+NV+H+EID+ +P K + GFT ER+
Sbjct: 59 DYLTKLDNHKPVIVCGDMNVAHKEIDLKNP---------------KNNMKNAGFTKEERE 103
Query: 234 RFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIA 293
+F +L G ID YR+ + +K+ + WS + RIDYF S++L+DR+I+
Sbjct: 104 KFSKLLDSG-FIDTYRYFNPDKEGVYSW-WSYRFNARKNNAGWRIDYFCASKKLEDRLIS 161
Query: 294 CEMQGHGIELEGFYGSDHCPVSLEL 318
++ + GSDHCPV LE+
Sbjct: 162 ADIHTEVL------GSDHCPVELEI 180
>gi|347359779|ref|YP_387047.2| exodeoxyribonuclease III [Desulfovibrio alaskensis G20]
gi|342906313|gb|ABB37352.2| exodeoxyribonuclease III [Desulfovibrio alaskensis G20]
Length = 255
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 90/287 (31%), Positives = 133/287 (46%), Gaps = 42/287 (14%)
Query: 42 LKFVTWNANSL-LLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKN---YQIW 95
+K +WN N +R K +W FS D DVI LQ M P +N Y +
Sbjct: 1 MKLYSWNVNGFRAIRQKPDWDWFSGC----DADVIGLQETKAMPEQIDPADRNPAGYHSY 56
Query: 96 WSLADSK--YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPN 153
W A K Y+G A ++ +P V++ L +Y+ +GRVI+ E++ FY N Y P
Sbjct: 57 WLGATVKKGYSGVAAFSRR--EPLSVAYDL--PVEQYQGEGRVIMLEYDAFYYFNIYFP- 111
Query: 154 NGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNG 213
NG +E + +D ++ KP++ CGD N +H +D++ P
Sbjct: 112 NGQSGDERLQYKLGFYDAFLEHAQTLRRKKPIVVCGDFNTAHRPVDLARP---------- 161
Query: 214 YVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYR 272
+E+ G GF ER + G +D +R +H D +S WS + R
Sbjct: 162 -----RENEGTSGFLPVERAWMDKFIDHG-YVDTFRLVH--PDAQAMYSWWSYRFKARDR 213
Query: 273 GKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
RIDYF VS+EL+ + + IE+E F GSDHCPV LEL+
Sbjct: 214 NVGWRIDYFFVSDELRHAV-----KDATIEMEVF-GSDHCPVGLELA 254
>gi|260887970|ref|ZP_05899233.1| exodeoxyribonuclease III [Selenomonas sputigena ATCC 35185]
gi|330838548|ref|YP_004413128.1| exodeoxyribonuclease III [Selenomonas sputigena ATCC 35185]
gi|260862221|gb|EEX76721.1| exodeoxyribonuclease III [Selenomonas sputigena ATCC 35185]
gi|329746312|gb|AEB99668.1| exodeoxyribonuclease III [Selenomonas sputigena ATCC 35185]
Length = 250
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 82/282 (29%), Positives = 132/282 (46%), Gaps = 36/282 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
++FV+WN N L + F D DV +Q + + Y+ +W+ A
Sbjct: 1 MRFVSWNVNGLRACLGKG---FMQSFKALDADVFGVQETKMQPEQAILELTGYKQYWNSA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA+ + +P VS+ L +++ +GRVI EF+ Y + Y PN+
Sbjct: 58 EKKGYSGTAVFSR--IEPLSVSYGLGIE--EHDHEGRVIALEFDDLYFVTVYTPNSQRGL 113
Query: 159 EENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E ++ R W++ ++++L K P++ CGDLNV+H EID+ +P
Sbjct: 114 ERLAY--RMTWEEAFRDYLLALDAKKPVVVCGDLNVAHTEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GFT ER++ +L G D +R L+ +K + WS + R
Sbjct: 158 -KTNRKNAGFTDEEREKMTELLAAG-FTDTFRALYPDKTGIYTW-WSYLRKARETNAGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
IDYF+VS+ L +I + +GSDHCPV L L
Sbjct: 215 IDYFLVSDRLAPKIKEATIHNE------VFGSDHCPVGLVLG 250
>gi|320528523|ref|ZP_08029680.1| exodeoxyribonuclease III [Solobacterium moorei F0204]
gi|320131109|gb|EFW23682.1| exodeoxyribonuclease III [Solobacterium moorei F0204]
Length = 251
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 88/289 (30%), Positives = 139/289 (48%), Gaps = 50/289 (17%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILM----RALSSPPFKNYQIWWS 97
+KF++WN N L +K F++F D D ALQ + + F+ Y ++ +
Sbjct: 1 MKFISWNVNGLRAAMKKG---FADFFHEQDADFFALQETKMQPDQLEDAMKFEGYHMYMN 57
Query: 98 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 156
A+ K Y+GT + K +P V++ +E K +GRVI E+ FY + Y PN+
Sbjct: 58 SAERKGYSGTLIYTKH--EPLSVTYEIEGDVTK---EGRVITLEYPDFYFVCAYVPNS-- 110
Query: 157 KEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 215
K+ R +W++ +++ +++ K P+I+ GDLNV+HEEID+ +P
Sbjct: 111 KDGLLRLPYRIEWEEMLRKHLMELDKKKPVIYTGDLNVAHEEIDLKNP------------ 158
Query: 216 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGK 274
+ PGF+ ER +L G D +R L+ + FS WS + R
Sbjct: 159 ---ATNHKNPGFSDEERAAMTKLLDSG-FSDTFRELYPDTQ---KFSWWSYRMKARERNV 211
Query: 275 RMRIDYFIVSEEL----KDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
RIDYF+VSE L +D +I E + GSDHCPV L ++
Sbjct: 212 GWRIDYFLVSERLLANVQDALIFDETE----------GSDHCPVGLNIN 250
>gi|313114917|ref|ZP_07800415.1| exodeoxyribonuclease III [Faecalibacterium cf. prausnitzii KLE1255]
gi|310622794|gb|EFQ06251.1| exodeoxyribonuclease III [Faecalibacterium cf. prausnitzii KLE1255]
Length = 250
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 81/282 (28%), Positives = 134/282 (47%), Gaps = 39/282 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPFK--NYQIWWSLA 99
+K ++WN N L + + F+ D D+ ++Q F Y + A
Sbjct: 1 MKLISWNVNGLRACLTHG---FAESFAALDADIFSVQETKMQPGQADFAPDGYTEYTYSA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ K Y+GTA ++ QP V+ + +++ +GRV+ E+ F+L+N Y PN+ ++
Sbjct: 58 EKKGYSGTACWCRE--QPLSVTTGIGIE--QHDHEGRVLTLEYPGFWLVNCYTPNS--QD 111
Query: 159 EENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
R +W+ + ++L K P+I CGDLNV+H EID+ +
Sbjct: 112 GLKRLDYRMEWEDAFRAYLLALDAKKPVILCGDLNVAHREIDIKN--------------- 156
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRM 276
+K + GFT ER + +L G D++R LH + + +S WS + +
Sbjct: 157 DKTNHMSAGFTDQERGKMTELLDAG-FADSFRVLHPD---EVKYSWWSYRFHAREKNAGW 212
Query: 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYFIVS + D+I A E+ +GSDHCPV L++
Sbjct: 213 RIDYFIVSRRIADKIRAAEIHNE------IFGSDHCPVELDI 248
>gi|406672108|ref|ZP_11079342.1| exodeoxyribonuclease III (xth) [Facklamia hominis CCUG 36813]
gi|405579418|gb|EKB53524.1| exodeoxyribonuclease III (xth) [Facklamia hominis CCUG 36813]
Length = 275
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 88/303 (29%), Positives = 134/303 (44%), Gaps = 54/303 (17%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFSNFI----TTFDPDVIALQILMRALSSPP------- 88
+K ++WN +SL L +N S + PDVIA+Q + P
Sbjct: 1 MKLISWNIDSLNAALTSDSNRALMSRAVLRDLVELKPDVIAIQETKLSTKGPTKKHLEIL 60
Query: 89 ---FKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEF 141
F YQ+ W A YAG L KK + + AL + +GR++ E
Sbjct: 61 KEQFPEYQLAWRSSCEPARKGYAGVMFLYKKSIDAQVTYPEIGGPAL-MDCEGRILTLEL 119
Query: 142 ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDV 200
E +L N Y PN G E R+ WD++ +++++ KP+I GD NV+HEEID+
Sbjct: 120 EDLFLTNVYTPNAG--SELKRLADRQIWDQKYADYLVELDQQKPVIAMGDFNVAHEEIDL 177
Query: 201 SHP--EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMD 258
++P F+A GFT ER+ F +L+ G D++R LH ++
Sbjct: 178 ANPASNHFSA-----------------GFTDEERQGFSRLLERG-FTDSFRHLHGP--VE 217
Query: 259 CGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
++W + K RIDYF+VS L+D+I M G DH P+ L
Sbjct: 218 GQYTWWAQRVKTSKINNSGWRIDYFVVSNRLRDQIKNSAMIDSGAR------QDHTPILL 271
Query: 317 ELS 319
E++
Sbjct: 272 EMT 274
>gi|294790372|ref|ZP_06755530.1| exodeoxyribonuclease III [Scardovia inopinata F0304]
gi|294458269|gb|EFG26622.1| exodeoxyribonuclease III [Scardovia inopinata F0304]
Length = 276
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 85/301 (28%), Positives = 132/301 (43%), Gaps = 49/301 (16%)
Query: 42 LKFVTWNANSL---LLRVKNNWPEFSNFITTF---DPDVIALQILMRALSSPP------- 88
+KFV+WN +SL LL + + + + +P+VIA+Q + P
Sbjct: 1 MKFVSWNIDSLNAALLGKSDRSVQSRQVLASIRGENPEVIAIQETKLPATGPSKKHLTAL 60
Query: 89 ---FKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEF 141
F +Y + W A YAGT L KK V+ + + +GR+ EF
Sbjct: 61 SQFFDDYDVHWRSSVEPARKGYAGTMCLSKKGLPLVAVTEPRIHSPEPMDCEGRLQTLEF 120
Query: 142 ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDV 200
FYL+N Y PN+G + R+ WD + ++ + KP++ CGD NV+H+EID+
Sbjct: 121 PDFYLVNVYTPNSG--DGLRRLSDRQLWDDAYRAYLTELDEAKPILACGDFNVAHQEIDL 178
Query: 201 SHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCG 260
+HP + GFT ER++F A+L G D YR+LH +
Sbjct: 179 AHP---------------ASNHHSAGFTDEERQKFTALLGAG-FTDTYRYLHPNQ--AGA 220
Query: 261 FSWSGN--PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
++W K RIDY++VS L R+ M G DH P+ L++
Sbjct: 221 YTWWAQRAVTSKANNSGWRIDYWLVSNRLNSRVKQSTMIDTGDR------RDHAPILLDI 274
Query: 319 S 319
+
Sbjct: 275 T 275
>gi|10640846|emb|CAC12624.1| probable apurinic/apyrimidinic endonuclease [Thermoplasma
acidophilum]
Length = 241
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 121/250 (48%), Gaps = 40/250 (16%)
Query: 75 IALQILMRALSSPPFKNYQIWWSLADS-----KYAGTALLVKKCFQPKKVSFSLEKTALK 129
IALQ +S P + Y + + L ++ Y+GT LV++ +P VS+ E
Sbjct: 24 IALQETKADSTSVPEEMYHLGYYLYNNPAKKKGYSGTMSLVRE--KPIDVSYGFEN---- 77
Query: 130 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 188
+GR++ EF+ FY +N Y PN + + +D++ E+ + KPLI C
Sbjct: 78 --EEGRILNLEFDKFYFINVYFPNA--QHGLTRLDMKLDFDEKFLEYSNELRKKKPLIIC 133
Query: 189 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 248
GD NV+HEEID++ P K++ GFT ER L G +D Y
Sbjct: 134 GDFNVAHEEIDIARP---------------KDNENNAGFTKQERDWMTKFLDSG-YVDTY 177
Query: 249 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 308
R KE +S+ N K G RIDYF+VS++++DR+ E+ LE G
Sbjct: 178 RIFMKEGGHYSWWSYRFNARAKNIG--WRIDYFVVSDDIRDRVKKAEI------LETVTG 229
Query: 309 SDHCPVSLEL 318
SDH PV+LE+
Sbjct: 230 SDHAPVTLEV 239
>gi|291536334|emb|CBL09446.1| exodeoxyribonuclease III [Roseburia intestinalis M50/1]
Length = 246
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 118/233 (50%), Gaps = 31/233 (13%)
Query: 88 PFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYL 146
P Y +W+ A K Y+GTA+ KK +P V++ + +++ +GRVI E+ FY+
Sbjct: 40 PLPGYFSYWNYAKKKGYSGTAIFTKK--EPLNVTYGI--GIEEHDKEGRVITLEYPDFYM 95
Query: 147 LNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEF 205
+ Y PN+ + E R +W+ + ++ + G KP+I CGDLNV+HEEID+ +P
Sbjct: 96 VTCYTPNS--QNELARLPYRMQWEDDFRAYLKRLDGSKPVILCGDLNVAHEEIDLKNP-- 151
Query: 206 FAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSG 265
K + GF+ ER++ +L G D +R+ + + + + WS
Sbjct: 152 -------------KTNRKNAGFSDEEREKMTKLLDAG-FTDTFRYFYPDTEQIYSW-WSY 196
Query: 266 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
+ + RIDYFI S+ + D++ ++ +GSDHCPV L++
Sbjct: 197 RFRAREKNAGWRIDYFITSKRMNDKLTGAKIH------TDVFGSDHCPVELDI 243
>gi|343524816|ref|ZP_08761774.1| exodeoxyribonuclease III [Streptococcus constellatus subsp.
pharyngis SK1060 = CCUG 46377]
gi|343398465|gb|EGV10998.1| exodeoxyribonuclease III [Streptococcus constellatus subsp.
pharyngis SK1060 = CCUG 46377]
Length = 275
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 83/300 (27%), Positives = 131/300 (43%), Gaps = 50/300 (16%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFSNFITTF----DPDVIALQILMRALSSPP------- 88
+K ++WN +SL L + + S + D+IA+Q + + P
Sbjct: 1 MKLISWNIDSLNAALTSDSARAQLSQAVLQTLQAEKADIIAIQETKLSANGPTKKHLKVL 60
Query: 89 ---FKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEF 141
F +Y+ W A YAGT L K+ PK ++F + +GR+I EF
Sbjct: 61 DELFPHYETTWRSSIEPARKGYAGTMFLYKENLSPK-ITFPEIGAPSTMDAEGRIITLEF 119
Query: 142 ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDV 200
E F++ Y PN G + + R+ WDK+ +++ KP++ GD NV+H EID+
Sbjct: 120 EKFFVTQVYTPNAG--DGLKRLEERQIWDKKYADYLTALDIEKPVLATGDYNVAHNEIDL 177
Query: 201 SHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCG 260
+HP N+ PGFT ER F +L G D +R++H D+
Sbjct: 178 AHPS------------SNRR---SPGFTDEERSGFANLLNRG-FTDTFRYIH--GDIPNV 219
Query: 261 FSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
+SW + K RIDY++ S + D++ EM G DH P+ LE+
Sbjct: 220 YSWWAQRSKTSKINNSGWRIDYWLTSNRIADKVTKSEMIDSGTR------QDHTPIVLEI 273
>gi|295099755|emb|CBK88844.1| exodeoxyribonuclease III [Eubacterium cylindroides T2-87]
Length = 249
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 84/285 (29%), Positives = 135/285 (47%), Gaps = 46/285 (16%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPP-------FKNYQI 94
+K ++WN N + + F + + T D D+ +Q + P YQ
Sbjct: 1 MKLISWNVNGIRAVLNKG---FIDILNTLDADIFCIQ---ETKAQPDQIEVDCDLYLYQY 54
Query: 95 WWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNN 154
S Y+GT + K +P V + ++ +++ +GRVI EF+++Y++ Y PN+
Sbjct: 55 INSAQRKGYSGTMIFSK--IEPLSVHYGIDIP--EHDTEGRVITLEFDSYYVVTVYTPNS 110
Query: 155 GWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY 214
G + + R +WDK ++ Q KP++ GDLNV++EEID+ +P
Sbjct: 111 G--DGLKRLEYRMEWDKAFSNYI-QSLDKPVLLTGDLNVANEEIDIKNP----------- 156
Query: 215 VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRG 273
K + GFT ER F L L D+YR L+ +K +S WS + +
Sbjct: 157 ----KTNRRNAGFTDEERDSFKKNLLT-ILKDSYRTLYPDK---VEYSWWSYRFKAREKN 208
Query: 274 KRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDY++VSEEL ++ ++ L YGSDHCPV LE+
Sbjct: 209 AGWRIDYWLVSEELMPKVKDSKI------LTDIYGSDHCPVQLEI 247
>gi|342218104|ref|ZP_08710730.1| exodeoxyribonuclease III [Megasphaera sp. UPII 135-E]
gi|341590909|gb|EGS34130.1| exodeoxyribonuclease III [Megasphaera sp. UPII 135-E]
Length = 249
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 83/281 (29%), Positives = 130/281 (46%), Gaps = 36/281 (12%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ--ILMRALSSPPFKNYQIWWSLA 99
+K+++WN N L +K F + T D D LQ L Y +W+ A
Sbjct: 1 MKYISWNVNGLRAIMKKG---FIDIFQTLDADFFCLQETKLQAGQIDLTLPGYHQYWNYA 57
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
D K Y+GTA+ K +P +V++ + A +E GR+I E+ Y++ Y PN+ +
Sbjct: 58 DRKGYSGTAIFTKH--EPLQVTYGMGIDAHDHE--GRLITLEYPDRYVVTCYTPNS--QN 111
Query: 159 EENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 217
E R +W+ + ++ Q K +I+CGDLNV+HEEID+ +P
Sbjct: 112 ELARLPYRMQWEDDCRHYLSQLKEQKSVIFCGDLNVAHEEIDLKNP-------------- 157
Query: 218 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 277
K + GF+ ER++ +L G D +R+ + + + WS + R
Sbjct: 158 -KNNRKNAGFSDEEREKMTNLLNSG-FTDTWRYFYPDT-ANVYSWWSYRFNARKNNAGWR 214
Query: 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
IDYFI S++L +C + H GSDHCPV L L
Sbjct: 215 IDYFITSDDLN----SCLKEAH--IYTDIMGSDHCPVGLIL 249
>gi|435851875|ref|YP_007313461.1| exodeoxyribonuclease III [Methanomethylovorans hollandica DSM
15978]
gi|433662505|gb|AGB49931.1| exodeoxyribonuclease III [Methanomethylovorans hollandica DSM
15978]
Length = 252
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 87/283 (30%), Positives = 126/283 (44%), Gaps = 41/283 (14%)
Query: 44 FVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPP-----FKNYQIWWSL 98
++WN N L K F T PD++ LQ P Y+ ++S
Sbjct: 1 MLSWNVNGLRAAYKKG---FMEIFTAHGPDILCLQETKAQEEQLPSALRHVDGYKAYFSS 57
Query: 99 ADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWK 157
A+ K Y+G L K+ +P +V + L K K++ +GRVI ++F F L N Y PN
Sbjct: 58 AEKKGYSGVGLYTKQ--EPLEVRYELGKA--KFDTEGRVIASDFGDFILFNVYFPNGKAS 113
Query: 158 EEENSFQRRRKWDKRIQEF-VLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVP 216
+E F + +D + L+ GK +I CGD+N +H+EID++ P
Sbjct: 114 KERLDF-KMEFYDAFLDHLDALKAQGKKIIICGDVNTAHKEIDLARP------------- 159
Query: 217 PNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKR 275
KE+ GF ER G ++ G L D R D ++ W + R
Sbjct: 160 --KENEKVSGFLPLERAWIGKLIDHGYL-DTLRMF---SDQPGQYTWWDMKTKARERNVG 213
Query: 276 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF S+ LKD II+ + L GSDHCP+ LEL
Sbjct: 214 WRIDYFFASDNLKDNIISAFI------LPDIMGSDHCPIGLEL 250
>gi|381150965|ref|ZP_09862834.1| exodeoxyribonuclease III [Methylomicrobium album BG8]
gi|380882937|gb|EIC28814.1| exodeoxyribonuclease III [Methylomicrobium album BG8]
Length = 254
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 85/284 (29%), Positives = 127/284 (44%), Gaps = 39/284 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALS-----SPPFKNYQIWW 96
+K V+WN N + F+ + D D + LQ + + Y I+
Sbjct: 1 MKIVSWNVNGIR---AVQGKGFAETLARLDADCLLLQETKAQVDQIEKVTADIDGYHIYS 57
Query: 97 SLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNG 155
+ A+ K Y+G +L+ + +P V + +++ +GRVI AEFE F+L+N Y PN+G
Sbjct: 58 NCAERKGYSGVSLMSRA--EPLAVVKDI--GIAEHDREGRVIAAEFEHFHLVNVYVPNSG 113
Query: 156 WKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY 214
+E RR WD ++L+ S KP+I CGD NV+H EID++ P+ A N
Sbjct: 114 --QELVRLDYRRTWDAEFLTYLLKLESRKPVIVCGDFNVAHREIDIARPK----ANYN-- 165
Query: 215 VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGK 274
G+T AE F L G +D +R H D WS +
Sbjct: 166 --------KSAGYTQAEIDGFSRFLDAG-FVDTFR--HHHPDTVAYSWWSFRANARANNI 214
Query: 275 RMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDY + S L D++ L GSDHCPV +E+
Sbjct: 215 GWRIDYALASRALADKV------KQAFILPEVTGSDHCPVGIEI 252
>gi|227432019|ref|ZP_03914038.1| exodeoxyribonuclease III [Leuconostoc mesenteroides subsp. cremoris
ATCC 19254]
gi|227352217|gb|EEJ42424.1| exodeoxyribonuclease III [Leuconostoc mesenteroides subsp. cremoris
ATCC 19254]
Length = 285
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 149/310 (48%), Gaps = 58/310 (18%)
Query: 36 NSKKDP-LKFVTWNANSL-------LLRVKNNWPEFSNFITTFDPDVIALQ---ILMRAL 84
NS+ D LKF++WN +S+ +R + W N I T PDV A+Q + L
Sbjct: 7 NSQGDENLKFISWNIDSINAAVEHKSVRGEMTWSTL-NEIATIRPDVFAIQETKLKSTGL 65
Query: 85 S-------SPPFKNYQIWW--SLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGR 135
+ + F Y ++ S A S Y+GT +L K +P +V + + +GR
Sbjct: 66 TKKQATAIAELFPEYHLYVNSSTARSGYSGTMVLSK--VEPIQVEYPTIGAPGPMDLEGR 123
Query: 136 VILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEFVLQC-SGKPLIWCGDL 191
+I EF TF+L Y PN+G +S R R +WD + +E++ + + KP+I+ GD+
Sbjct: 124 IITLEFPTFFLSTVYTPNSG-----SSLIRLPERGEWDDKYREYIKRLDATKPVIFSGDM 178
Query: 192 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 251
NV+H+EID+ +P+ PN+ GFT ER++F A+L G D +R L
Sbjct: 179 NVAHQEIDLKNPK------------PNRH---SAGFTDQEREKFSALLDAG-FTDTFRSL 222
Query: 252 HKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 309
+ D ++W + K RIDY++VS+ + + + + G
Sbjct: 223 N--PDTPSVYTWWAQISKTSKINNSGWRIDYYLVSDRIAENVTESCVIDTGAR------Q 274
Query: 310 DHCPVSLELS 319
DH P+ LE++
Sbjct: 275 DHAPILLEIN 284
>gi|440302801|gb|ELP95108.1| exodeoxyribonuclease III, putative [Entamoeba invadens IP1]
Length = 373
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 87/258 (33%), Positives = 130/258 (50%), Gaps = 36/258 (13%)
Query: 66 FITTFDPDVIALQ-ILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKVSFS 122
+I DPD+I Q ++ P Y ++S + +K YAGTA+L K+ +P V+
Sbjct: 145 YIKKEDPDIICFQETKLQDGVVPTVSGYNSYFSASTAKKGYAGTAILTKE--KPITVTMK 202
Query: 123 LEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS- 181
L+ K GR+I AE+E FYL+NTY N+G K EN +R WD +++ ++ S
Sbjct: 203 LDG---KLNEHGRIITAEYEKFYLVNTYVMNSGVK-LENLKKRVDTWDVSMKKHLIDLSK 258
Query: 182 GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 241
K +IWCGDLNV+ IDV+ P A +L GFT ER+ +L+E
Sbjct: 259 KKKVIWCGDLNVALRWIDVAKP----ATRLRC-----------AGFTKEERESASQLLEE 303
Query: 242 GRLIDAYRFLH-KEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHG 300
L+D+++ H KEK+ FS+ K + R+DYF VS+EL D I +
Sbjct: 304 VGLVDSFQVKHPKEKNFYTFFSFR----DKAKVSGWRLDYFDVSKELVDDITQIYRRKE- 358
Query: 301 IELEGFYGSDHCPVSLEL 318
SDH P+ + +
Sbjct: 359 -----VNISDHVPLVIHI 371
>gi|341882542|gb|EGT38477.1| CBN-EXO-3 protein [Caenorhabditis brenneri]
Length = 293
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 96/315 (30%), Positives = 153/315 (48%), Gaps = 43/315 (13%)
Query: 13 SAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDP 72
S + P L+ T+ S++ ++K KFV WN L VK + +FS + P
Sbjct: 11 STEAPKLASIFTKKPKTQIPSDDGNQKS-WKFVCWNVAGLRACVKKS--DFSEVLAE-QP 66
Query: 73 DVIALQILMRALSSPP-----FKNYQIWWSLADSK---YAGTALLVKKCFQPKKVSFSLE 124
D++ L + PP FK+Y ++ K YAG LL KC P K+ +
Sbjct: 67 DIVFLG-ETKCKEWPPEVEETFKDYSKTLVVSTEKNGGYAGVGLL-SKC-APLKIHKGIG 123
Query: 125 KTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 183
++ GR+I+AE+ FY + Y PN+G K + ++R KW+K + + + + + K
Sbjct: 124 DP--DFDSAGRLIIAEYSQFYFMGAYVPNSGAKLV--NLEKRGKWEKLLTDKLREMNEKK 179
Query: 184 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 243
P+I+ GDLNV+H EID+ +PE N+ GFT ER FG +L+ G
Sbjct: 180 PVIYGGDLNVAHNEIDLKNPE------------SNRNK--TAGFTDQERGWFGEMLEIG- 224
Query: 244 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 303
D++R LH E +S+ N K G R+DYF+VS+ + D + ++ +
Sbjct: 225 FTDSFRKLHPESKKYSFWSYLANSREKDVG--WRLDYFVVSDRIMDNVKKSDI------M 276
Query: 304 EGFYGSDHCPVSLEL 318
GSDH P+ ++L
Sbjct: 277 SAVKGSDHAPIVMQL 291
>gi|372324144|ref|ZP_09518733.1| Exodeoxyribonuclease III [Oenococcus kitaharae DSM 17330]
gi|366982952|gb|EHN58351.1| Exodeoxyribonuclease III [Oenococcus kitaharae DSM 17330]
Length = 274
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 85/303 (28%), Positives = 133/303 (43%), Gaps = 56/303 (18%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQILMRALSSPPFKNYQIW 95
+ F++WN +SL +++ P + I PD ++Q ++ K Q+
Sbjct: 1 MNFISWNIDSLNAAIEHKSPRGELTFALLSQIAAQKPDFFSIQESKLPVTGLNAKQTQVL 60
Query: 96 WSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEP----------------DGRVILA 139
L + G V+ P K ++ T K +P +GR+IL
Sbjct: 61 NDL----FPGYCTFVRNSTPPAKKGYAGVITLAKEQPISFNCPTIDAPDTMDEEGRIILL 116
Query: 140 EFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEI 198
E+ FYLLN Y PN+G + + R WD + +V Q + K +I+ GDLNV+HEEI
Sbjct: 117 EYPDFYLLNVYTPNSG--DGLKRLEMRGLWDDNFRVYVSQLAERKAVIFSGDLNVAHEEI 174
Query: 199 DVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMD 258
D+ +P + GFT ER +F +L+ G D +RF H + D
Sbjct: 175 DLKNPS---------------TNHQSAGFTDQERDKFTQLLEAG-FTDTWRFQHPD---D 215
Query: 259 CGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
+SW N + K RIDY++VS LKD+I M G +DH P+ L
Sbjct: 216 VAYSWWSQRNRMAKPNNAGWRIDYYLVSSTLKDKIKKSGMIDSGTR------ADHAPIYL 269
Query: 317 ELS 319
+++
Sbjct: 270 QMA 272
>gi|433449048|ref|ZP_20411913.1| exodeoxyribonuclease III [Weissella ceti NC36]
gi|429539437|gb|ELA07474.1| exodeoxyribonuclease III [Weissella ceti NC36]
Length = 275
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 82/300 (27%), Positives = 136/300 (45%), Gaps = 49/300 (16%)
Query: 42 LKFVTWNANSLLLRVKNNWPE----FSNF--ITTFDPDVIALQIL---MRALSSPP---- 88
++F++WN +SL +++ P +S I PDV+A+Q + ++ P
Sbjct: 1 MQFISWNIDSLNAAIQHKSPRGEMTWSTLVEIAAMAPDVLAIQETKSPITGMTGPQEKVI 60
Query: 89 ---FKNYQIWWSLADSK--YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFET 143
F Y I+ + + + Y+GT +L K +P ++ + +GR++ EFE
Sbjct: 61 KELFPEYHIYQNTSTERKGYSGTMMLSKT--EPLNITTPSIDAPEGMDTEGRILTLEFEN 118
Query: 144 FYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSH 202
++ Y PN+G E + R+ WD + Q ++ KP+I+ GD+NV+HE ID+ +
Sbjct: 119 AFVSTVYTPNSG--RELARLEDRQGWDAKYQAYIESLDAIKPVIFSGDMNVAHESIDLKN 176
Query: 203 PEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS 262
P K + GFT ER F ++L G +D +RF H D +S
Sbjct: 177 P---------------KANRRSAGFTDEERAGFTSLLSAG-FVDTFRFQH--PDTIEAYS 218
Query: 263 W--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 320
W + K RIDY++VS+ L D I + G DH PV+L L +
Sbjct: 219 WWAQMSKTSKINNTGWRIDYYLVSQRLADNIDETSILNTGDR------QDHAPVTLSLKD 272
>gi|116618622|ref|YP_818993.1| exonuclease III [Leuconostoc mesenteroides subsp. mesenteroides
ATCC 8293]
gi|116097469|gb|ABJ62620.1| Exonuclease III [Leuconostoc mesenteroides subsp. mesenteroides
ATCC 8293]
Length = 272
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 87/303 (28%), Positives = 144/303 (47%), Gaps = 57/303 (18%)
Query: 42 LKFVTWNANSL-------LLRVKNNWPEFSNFITTFDPDVIALQ---ILMRALS------ 85
+KF++WN +S+ +R + W N I T PDV A+Q + L+
Sbjct: 1 MKFISWNIDSINAAVEHKSVRGEMTWSTL-NEIATIRPDVFAIQETKLKSTGLTKKQATA 59
Query: 86 -SPPFKNYQIWW--SLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFE 142
+ F Y ++ S A S Y+GT +L K +P +V + + +GR+I EF
Sbjct: 60 IAELFPEYHLYVNSSTARSGYSGTMVLSK--VEPTQVEYPTIGAPGSMDLEGRIITLEFP 117
Query: 143 TFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEI 198
TF+L Y PN+G +S R R +WD + +E++ + KP+I+ GD+NV+H+EI
Sbjct: 118 TFFLSTVYTPNSG-----SSLIRLPERGEWDDKYREYIKTLDATKPVIFSGDMNVAHQEI 172
Query: 199 DVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMD 258
D+ +P+ PN+ GFT ER++F A+L G D +R L+ D
Sbjct: 173 DLKNPK------------PNRH---SAGFTDQEREKFSALLDAG-FTDTFRSLN--PDTP 214
Query: 259 CGFSWSG--NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
++W + K RIDY++VS+ + + + + G DH P+ L
Sbjct: 215 SVYTWWAQISKTSKINNSGWRIDYYLVSDRIAENVTESCVIDTGAR------QDHAPILL 268
Query: 317 ELS 319
E++
Sbjct: 269 EIN 271
>gi|450062698|ref|ZP_21844475.1| putative exodeoxyribonuclease III [Streptococcus mutans NLML5]
gi|449205430|gb|EMC06177.1| putative exodeoxyribonuclease III [Streptococcus mutans NLML5]
Length = 275
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 80/300 (26%), Positives = 134/300 (44%), Gaps = 50/300 (16%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQILMRALSSPP------- 88
+K ++WN +SL + ++ + + D D++A+Q + P
Sbjct: 1 MKLISWNIDSLNAALTSDSARALLSRAVLDTLMEQDADILAIQETKLSAKGPTKKHLRIL 60
Query: 89 ---FKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEF 141
F +Y + W A YAGT L K QP +++ + +GR+I EF
Sbjct: 61 KDYFPDYDVVWRSSVEPARKGYAGTMFLYKSSLQPT-ITYPEIGAPTTMDDEGRIITLEF 119
Query: 142 ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDV 200
+ F++ Y PN G + R+ WD++ ++ Q KP++ GD NV+H+EID+
Sbjct: 120 DDFFVTQVYTPNAG--DGLKRLDDRQIWDEKYAIYLAQLDKQKPVLATGDYNVAHKEIDL 177
Query: 201 SHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCG 260
+HP N+ PGFT ER F +L++G D +R++H D+
Sbjct: 178 AHPS------------SNRR---SPGFTDEERAGFTHLLEQG-FTDTFRYIH--GDVPNV 219
Query: 261 FSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
+SW + K RIDY+++S L D+I+ EM G DH P+ L++
Sbjct: 220 YSWWAQRSKTSKINNSGWRIDYWLISNRLSDKILKSEMIDSGTR------QDHTPILLKI 273
>gi|149200232|ref|ZP_01877254.1| exodeoxyribonuclease (ExoA) [Lentisphaera araneosa HTCC2155]
gi|149136674|gb|EDM25105.1| exodeoxyribonuclease (ExoA) [Lentisphaera araneosa HTCC2155]
Length = 258
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 84/285 (29%), Positives = 135/285 (47%), Gaps = 42/285 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ---ILMRALSSPPFK--NYQIWW 96
+K ++WN N + K F + + ++D DVI LQ LS NY +W
Sbjct: 3 VKLISWNVNGIRAVEKKG---FVDLMQSWDADVICLQETKAHKEQLSDELINIGNYTSYW 59
Query: 97 SLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK-YEPDGRVILAEFETFYLLNTYAPNN 154
+ K Y+ A+ + +P +V +E ++ ++ +GRVI+AE+ FYL Y PN
Sbjct: 60 HSGEKKGYSSVAIYSR--IEPIRV---IEGLGIEEFDREGRVIIAEYSDFYLFGVYFPNA 114
Query: 155 GWKEEENSFQRRRKW-DKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNG 213
+ E R ++ D I++ + S K + CGD NV+H+ ID+ +P
Sbjct: 115 --QAELKRIDYRLEFGDALIEQLKEKYSDKACVLCGDFNVAHKAIDLKNP---------- 162
Query: 214 YVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRG 273
K + PG++I ER L G +D +R ++ D +S+ G + R
Sbjct: 163 -----KANEKNPGYSIQERNWMDKFLAAGH-VDTFRMFNQNPDEYSWWSYRGGA--RSRN 214
Query: 274 KRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RIDYF VSE +DR++ + ++ GSDHCPVS+EL
Sbjct: 215 VGWRIDYFCVSESARDRVLDAGI------MQEVLGSDHCPVSIEL 253
>gi|417002268|ref|ZP_11941657.1| exodeoxyribonuclease III [Anaerococcus prevotii ACS-065-V-Col13]
gi|325479409|gb|EGC82505.1| exodeoxyribonuclease III [Anaerococcus prevotii ACS-065-V-Col13]
Length = 273
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 91/303 (30%), Positives = 133/303 (43%), Gaps = 56/303 (18%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFSN----FITTFDPDVIALQILMRALSSPP------- 88
+KF++WN +SL L +N S I D DVIALQ S P
Sbjct: 1 MKFISWNIDSLNAALTSDSNRAVMSREVLETIKREDADVIALQETKLPKSGPSKKHKEKL 60
Query: 89 ---FKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEF 141
F +Y W+ A YAGT L KK + +F + +GR++ EF
Sbjct: 61 AEFFPDYDYVWTCSCEGARKSYAGTMTLYKKGLDVTE-TFPKIDAPGTMDFEGRIVTLEF 119
Query: 142 ETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEE 197
+ FY Y PN G N R R+ WD++ +++ KP+I GD NV+H
Sbjct: 120 DDFYFTQVYTPNAG-----NGLVRLADRQIWDEKYADYLEGLDKIKPVIASGDFNVAHTP 174
Query: 198 IDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDM 257
ID++HPE N ++ PGFT ER+ F +L G D +R H KD+
Sbjct: 175 IDLAHPE-------NNHI--------SPGFTDEEREGFTRLLARG-FTDTFR--HLNKDL 216
Query: 258 DCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVS 315
+ ++W + K RIDYF+VS+ L +R+ + + G DH P+
Sbjct: 217 EGAYTWWAQRVKTSKINNSGWRIDYFLVSDRLMERVKSSTIINSGDR------QDHTPIM 270
Query: 316 LEL 318
LE+
Sbjct: 271 LEI 273
>gi|374631714|ref|ZP_09704088.1| exodeoxyribonuclease III [Metallosphaera yellowstonensis MK1]
gi|373525544|gb|EHP70324.1| exodeoxyribonuclease III [Metallosphaera yellowstonensis MK1]
Length = 245
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 87/280 (31%), Positives = 128/280 (45%), Gaps = 39/280 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPFK--NYQIWWSLA 99
++F++WN N L + D DV+ Q + + F+ Y ++ A
Sbjct: 1 MRFLSWNVNGLRSALGKGILGIIK-----DYDVVMFQEVKSDVVPLDFQFLPYHVYLFPA 55
Query: 100 DSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 158
+ Y+GT L ++ +SF +++ +GRVI EF FY++N Y PN+G E
Sbjct: 56 RKRGYSGTMTLSRQA----PLSFRYGIGREEFDSEGRVITLEFPDFYVVNAYFPNSG--E 109
Query: 159 EENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPN 218
Q + +D+ QEFV KPL+ CGD NV+HEEID++ PE
Sbjct: 110 GLRRLQFKLSFDEAFQEFVGSLR-KPLVVCGDFNVAHEEIDIARPE-------------- 154
Query: 219 KEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRI 278
E+ GFT ER+ F L G +D +R KE WS + R RI
Sbjct: 155 -ENEDHAGFTREEREWFHKFLLSG-FVDTFRMFVKEGGHYS--WWSYRTKARERNVGWRI 210
Query: 279 DYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
DY +VS EL R+ + LE GSDH P++L+L
Sbjct: 211 DYCLVSAELAGRVRRANI------LEDMMGSDHAPITLQL 244
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.135 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,612,146,624
Number of Sequences: 23463169
Number of extensions: 244789104
Number of successful extensions: 558409
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 3614
Number of HSP's that attempted gapping in prelim test: 549333
Number of HSP's gapped (non-prelim): 4600
length of query: 335
length of database: 8,064,228,071
effective HSP length: 143
effective length of query: 192
effective length of database: 9,003,962,200
effective search space: 1728760742400
effective search space used: 1728760742400
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 77 (34.3 bits)