BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019834
(335 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P43138|APEX1_RAT DNA-(apurinic or apyrimidinic site) lyase OS=Rattus norvegicus
GN=Apex1 PE=1 SV=2
Length = 317
Score = 130 bits (328), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 98/323 (30%), Positives = 163/323 (50%), Gaps = 45/323 (13%)
Query: 6 KPIEKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSN 65
K EKE + + P L D +T+ + K LK +WN + L +K + +
Sbjct: 30 KKTEKEAAGEGPVLYEDPPDQKTSASG-----KSATLKICSWNVDGLRAWIKK---KGLD 81
Query: 66 FITTFDPDVIALQ-------ILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPK 117
++ PD++ LQ L L P +Q W + +D + Y+G LL ++C P
Sbjct: 82 WVKEEAPDILCLQETKCSENKLPAELQELPGLTHQYWSAPSDKEGYSGVGLLSRQC--PL 139
Query: 118 KVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV 177
KVS+ + + +++ +GRVI+AEFE+F L+ Y PN G + R++WD+ ++F+
Sbjct: 140 KVSYGIGEE--EHDQEGRVIVAEFESFILVTAYVPNAG--RGLVRLEYRQRWDEAFRKFL 195
Query: 178 LQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFG 236
S KPL+ CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG
Sbjct: 196 KDLASRKPLVLCGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFG 240
Query: 237 AILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEM 296
+L+ L D++R L+ F W+ + + R+DYF++S L + ++
Sbjct: 241 EMLQAVPLADSFRHLYPNTAYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKI 299
Query: 297 QGHGIELEGFYGSDHCPVSLELS 319
+ + GSDHCP++L L+
Sbjct: 300 RSKAL------GSDHCPITLYLA 316
>sp|P28352|APEX1_MOUSE DNA-(apurinic or apyrimidinic site) lyase OS=Mus musculus GN=Apex1
PE=1 SV=2
Length = 317
Score = 130 bits (328), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 98/323 (30%), Positives = 163/323 (50%), Gaps = 45/323 (13%)
Query: 6 KPIEKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSN 65
K EKE + + P L D +T+ + K LK +WN + L +K + +
Sbjct: 30 KKTEKEAAGEGPVLYEDPPDQKTSPSG-----KSATLKICSWNVDGLRAWIKK---KGLD 81
Query: 66 FITTFDPDVIALQ-------ILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPK 117
++ PD++ LQ L L P +Q W + +D + Y+G LL ++C P
Sbjct: 82 WVKEEAPDILCLQETKCSENKLPAELQELPGLTHQYWSAPSDKEGYSGVGLLSRQC--PL 139
Query: 118 KVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV 177
KVS+ + + +++ +GRVI+AEFE+F L+ Y PN G + R++WD+ ++F+
Sbjct: 140 KVSYGIGEE--EHDQEGRVIVAEFESFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFL 195
Query: 178 LQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFG 236
S KPL+ CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG
Sbjct: 196 KDLASRKPLVLCGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFG 240
Query: 237 AILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEM 296
+L+ L D++R L+ F W+ + + R+DYF++S L + ++
Sbjct: 241 ELLQAVPLADSFRHLYPNTAYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKI 299
Query: 297 QGHGIELEGFYGSDHCPVSLELS 319
+ + GSDHCP++L L+
Sbjct: 300 RSKAL------GSDHCPITLYLA 316
>sp|A2T6Y4|APEX1_PANTR DNA-(apurinic or apyrimidinic site) lyase OS=Pan troglodytes
GN=APEX1 PE=3 SV=1
Length = 318
Score = 128 bits (321), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 96/320 (30%), Positives = 164/320 (51%), Gaps = 45/320 (14%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 DKEAAGEGPALYEDPPDQKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQ-------ILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVS 120
PD++ LQ L L P ++Q W + +D + Y+G LL ++C P KVS
Sbjct: 86 EEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVS 143
Query: 121 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ- 179
+ + + +++ +GRVI+AEF++F L+ Y PN G + R++WD+ ++F+
Sbjct: 144 YGIGEE--EHDQEGRVIVAEFDSFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGL 199
Query: 180 CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 239
S KPL+ CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L
Sbjct: 200 ASRKPLVLCGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELL 244
Query: 240 KEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGH 299
+ L D++R L+ F W+ + + R+DYF++S L + +++
Sbjct: 245 QAVPLADSFRHLYPNTPYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSK 303
Query: 300 GIELEGFYGSDHCPVSLELS 319
+ GSDHCP++L L+
Sbjct: 304 AL------GSDHCPITLYLA 317
>sp|A1YFZ3|APEX1_PANPA DNA-(apurinic or apyrimidinic site) lyase OS=Pan paniscus GN=APEX1
PE=3 SV=1
Length = 318
Score = 128 bits (321), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 96/320 (30%), Positives = 164/320 (51%), Gaps = 45/320 (14%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 DKEAAGEGPALYEDPPDQKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQ-------ILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVS 120
PD++ LQ L L P ++Q W + +D + Y+G LL ++C P KVS
Sbjct: 86 EEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVS 143
Query: 121 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ- 179
+ + + +++ +GRVI+AEF++F L+ Y PN G + R++WD+ ++F+
Sbjct: 144 YGIGEE--EHDQEGRVIVAEFDSFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGL 199
Query: 180 CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 239
S KPL+ CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L
Sbjct: 200 ASRKPLVLCGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELL 244
Query: 240 KEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGH 299
+ L D++R L+ F W+ + + R+DYF++S L + +++
Sbjct: 245 QAVPLADSFRHLYPNTPYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSK 303
Query: 300 GIELEGFYGSDHCPVSLELS 319
+ GSDHCP++L L+
Sbjct: 304 AL------GSDHCPITLYLA 317
>sp|A2T7I6|APEX1_PONPY DNA-(apurinic or apyrimidinic site) lyase OS=Pongo pygmaeus
GN=APEX1 PE=3 SV=1
Length = 318
Score = 128 bits (321), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 96/320 (30%), Positives = 163/320 (50%), Gaps = 45/320 (14%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 DKEAAGEGPALYEDPPDQKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQ-------ILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVS 120
PD++ LQ L L P ++Q W + +D + Y+G LL ++C P KVS
Sbjct: 86 EEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVS 143
Query: 121 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ- 179
+ + + +++ +GRVI+AEF++F L+ Y PN G + R++WD+ + F+
Sbjct: 144 YGIGEE--EHDQEGRVIVAEFDSFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRRFLKGL 199
Query: 180 CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 239
S KPL+ CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L
Sbjct: 200 ASRKPLVLCGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELL 244
Query: 240 KEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGH 299
+ L D++R L+ F W+ + + R+DYF++S L + +++
Sbjct: 245 QAVPLADSFRHLYPNTPYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLTALCDSKIRSK 303
Query: 300 GIELEGFYGSDHCPVSLELS 319
+ GSDHCP++L L+
Sbjct: 304 AL------GSDHCPITLYLA 317
>sp|P27695|APEX1_HUMAN DNA-(apurinic or apyrimidinic site) lyase OS=Homo sapiens GN=APEX1
PE=1 SV=2
Length = 318
Score = 127 bits (320), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 96/320 (30%), Positives = 163/320 (50%), Gaps = 45/320 (14%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 DKEAAGEGPALYEDPPDQKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQ-------ILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVS 120
PD++ LQ L L P ++Q W + +D + Y+G LL ++C P KVS
Sbjct: 86 EEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVS 143
Query: 121 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ- 179
+ + +++ +GRVI+AEF++F L+ Y PN G + R++WD+ ++F+
Sbjct: 144 YGIGDE--EHDQEGRVIVAEFDSFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGL 199
Query: 180 CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 239
S KPL+ CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L
Sbjct: 200 ASRKPLVLCGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELL 244
Query: 240 KEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGH 299
+ L D++R L+ F W+ + + R+DYF++S L + +++
Sbjct: 245 QAVPLADSFRHLYPNTPYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSK 303
Query: 300 GIELEGFYGSDHCPVSLELS 319
+ GSDHCP++L L+
Sbjct: 304 AL------GSDHCPITLYLA 317
>sp|A1YES6|APEX1_GORGO DNA-(apurinic or apyrimidinic site) lyase OS=Gorilla gorilla
gorilla GN=APEX1 PE=3 SV=1
Length = 318
Score = 127 bits (318), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 98/321 (30%), Positives = 162/321 (50%), Gaps = 47/321 (14%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 DKEAAGEGPALYEDPPDQKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQ-------ILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKV 119
PD++ LQ L L P +YQ +WS K Y+G LL ++C P KV
Sbjct: 86 EEAPDILCLQETKCSENKLPAELQELPGLSYQ-YWSAPXXKEGYSGVGLLSRQC--PLKV 142
Query: 120 SFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ 179
S+ + + +++ +GRVI+AEF++F L+ Y PN G + R++WD+ + F+
Sbjct: 143 SYGIGEE--EHDQEGRVIVAEFDSFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRRFLKG 198
Query: 180 -CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAI 238
S KPL+ CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +
Sbjct: 199 LASRKPLVLCGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGEL 243
Query: 239 LKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQG 298
L+ L D++R L+ F W+ + + R+DYF++S L + +++
Sbjct: 244 LQAVPLADSFRHLYPNTPYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRS 302
Query: 299 HGIELEGFYGSDHCPVSLELS 319
+ GSDHCP++L L+
Sbjct: 303 KAL------GSDHCPITLYLA 317
>sp|P51173|APEA_DICDI DNA-(apurinic or apyrimidinic site) lyase OS=Dictyostelium
discoideum GN=apeA PE=2 SV=2
Length = 361
Score = 126 bits (317), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 89/291 (30%), Positives = 145/291 (49%), Gaps = 39/291 (13%)
Query: 34 EENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQIL------MRALSSP 87
E +++ +K ++WN + F+ ++ +PDV+ LQ ++ P
Sbjct: 97 EPKVEENQMKIISWNVAGFKSVLSKG---FTEYVEKENPDVLCLQETKINPSNIKKDQMP 153
Query: 88 PFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYL 146
K Y+ + AD K + GT +L KK +P ++F + K++ +GRVI E++ FY+
Sbjct: 154 --KGYEYHFIEADQKGHHGTGVLTKK--KPNAITFGI--GIAKHDNEGRVITLEYDQFYI 207
Query: 147 LNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEF 205
+NTY PN G + + R ++WD Q ++ + + KP+IWCGDLNV+H EID+ +P
Sbjct: 208 VNTYIPNAGTRGLQRLDYRIKEWDVDFQAYLEKLNATKPIIWCGDLNVAHTEIDLKNP-- 265
Query: 206 FAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSG 265
K + GFTI ER F L++G +D+YR + K+ F WS
Sbjct: 266 -------------KTNKKSAGFTIEERTSFSNFLEKG-YVDSYRHFNPGKEGSYTF-WSY 310
Query: 266 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
G+ + R+DYF+VS+ L D I + GSDHCP+ +
Sbjct: 311 LGGGRSKNVGWRLDYFVVSKRLMDSIKISPFHRTSV-----MGSDHCPIGV 356
>sp|P37454|EXOA_BACSU Exodeoxyribonuclease OS=Bacillus subtilis (strain 168) GN=exoA PE=1
SV=1
Length = 252
Score = 122 bits (306), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 146/281 (51%), Gaps = 39/281 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ---ILMRALSSPPFKNYQIWWSL 98
+K ++WN N L R +F +++ D D+I LQ I + P ++Y ++W+
Sbjct: 1 MKLISWNVNGL--RAVMRKMDFLSYLKEEDADIICLQETKIQDGQVDLQP-EDYHVYWNY 57
Query: 99 ADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWK 157
A K Y+GTA+ K+ +P +V + + +++ +GRVI EFE +++ Y PN+
Sbjct: 58 AVKKGYSGTAVFSKQ--EPLQVIYGI--GVEEHDQEGRVITLEFENVFVMTVYTPNSRRG 113
Query: 158 EEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVP 216
E + R +W++ + ++L+ K P+I CGDLNV+H+EID+ +P
Sbjct: 114 LERIDY--RMQWEEALLSYILELDQKKPVILCGDLNVAHQEIDLKNP------------- 158
Query: 217 PNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG-KYRGKR 275
K + GF+ ER+ F L+ G +D++R H D++ +SW G + R
Sbjct: 159 --KANRNNAGFSDQEREAFTRFLEAG-FVDSFR--HVYPDLEGAYSWWSYRAGARDRNIG 213
Query: 276 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
RIDYF+VSE LK++I + + GSDHCPV L
Sbjct: 214 WRIDYFVVSESLKEQIEDASISADVM------GSDHCPVEL 248
>sp|P23196|APEX1_BOVIN DNA-(apurinic or apyrimidinic site) lyase OS=Bos taurus GN=APEX1
PE=1 SV=2
Length = 318
Score = 119 bits (299), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 91/320 (28%), Positives = 162/320 (50%), Gaps = 45/320 (14%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
EKE + L D +T+ + K LK +WN + L +K + +++
Sbjct: 34 EKEAVGEGAVLYEDPPDQKTSPSG-----KSATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQILMRALSSPPFK-------NYQIWWSLADSK-YAGTALLVKKCFQPKKVS 120
PD++ LQ + + P + ++Q W + +D + Y+G LL ++C P KVS
Sbjct: 86 EEAPDILCLQETKCSENKLPVELQELSGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVS 143
Query: 121 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ- 179
+ + + +++ +GRVI+AE++ F L+ Y PN G + R++WD+ ++F+
Sbjct: 144 YGIGEE--EHDQEGRVIVAEYDAFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGL 199
Query: 180 CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 239
S KPL+ CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L
Sbjct: 200 ASRKPLVLCGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELL 244
Query: 240 KEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGH 299
+ L D++R L+ F W+ + + R+DYF++S+ + + +++
Sbjct: 245 QAVPLTDSFRHLYPNTAYAYTF-WTYMMNARSKNVGWRLDYFLLSQSVLPALCDSKIRSK 303
Query: 300 GIELEGFYGSDHCPVSLELS 319
+ GSDHCP++L L+
Sbjct: 304 AL------GSDHCPITLYLA 317
>sp|P45951|ARP_ARATH Apurinic endonuclease-redox protein OS=Arabidopsis thaliana GN=ARP
PE=2 SV=2
Length = 536
Score = 112 bits (279), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 94/295 (31%), Positives = 146/295 (49%), Gaps = 54/295 (18%)
Query: 42 LKFVTWNANSL--LLRVKN----NWPEFSNFITTFDPDVIALQ-ILMRALSSPPFKNYQI 94
+K +TWN N L LL+ ++ + NF D++ LQ ++ K I
Sbjct: 276 VKVMTWNVNGLRGLLKFESFSALQLAQRENF------DILCLQETKLQVKDVEEIKKTLI 329
Query: 95 ------WWSLADSK--YAGTALLVKKCFQPKKVSFSLEKTALK-YEPDGRVILAEFETFY 145
+WS + SK Y+GTA++ + +P V + T L ++ +GR++ AEF++FY
Sbjct: 330 DGYDHSFWSCSVSKLGYSGTAIISR--IKPLSVRYG---TGLSGHDTEGRIVTAEFDSFY 384
Query: 146 LLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPE 204
L+NTY PN+G + S+ R +WD+ + + + KP++ GDLN +HEEID+ +P
Sbjct: 385 LINTYVPNSGDGLKRLSY-RIEEWDRTLSNHIKELEKSKPVVLTGDLNCAHEEIDIFNP- 442
Query: 205 FFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-W 263
NK GFTI ER+ FGA L + +D +R K+ G++ W
Sbjct: 443 -----------AGNKR---SAGFTIEERQSFGANLLDKGFVDTFR---KQHPGVVGYTYW 485
Query: 264 SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
G+ K R+DYF+VS+ IA + I L GSDHCP+ L L
Sbjct: 486 GYRHGGRKTNKGWRLDYFLVSQS-----IAANVHDSYI-LPDINGSDHCPIGLIL 534
>sp|P27864|RRP1_DROME Recombination repair protein 1 OS=Drosophila melanogaster GN=Rrp1
PE=1 SV=2
Length = 679
Score = 110 bits (275), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 81/281 (28%), Positives = 129/281 (45%), Gaps = 38/281 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPP-----FKNYQIWW 96
LK +WN L +K + I +PD+ LQ A P Y +W
Sbjct: 427 LKICSWNVAGLRAWLKKDG---LQLIDLEEPDIFCLQETKCANDQLPEEVTRLPGYHPYW 483
Query: 97 SLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 156
YAG A+ K P V + + +++ GR+I AE+E FYL+N Y PN+G
Sbjct: 484 LCMPGGYAGVAIYSK--IMPIHVEYGIGNE--EFDDVGRMITAEYEKFYLINVYVPNSGR 539
Query: 157 KEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 215
K + + R +W+K Q +V + KP++ CGD+NVSH ID+ +P
Sbjct: 540 K--LVNLEPRMRWEKLFQAYVKKLDALKPVVICGDMNVSHMPIDLENP------------ 585
Query: 216 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 275
K + GFT ER + +L G +D +R L+ ++ F W+ + R
Sbjct: 586 ---KNNTKNAGFTQEERDKMTELLGLG-FVDTFRHLYPDRKGAYTF-WTYMANARARNVG 640
Query: 276 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 316
R+DY +VSE +++ E++ + GSDHCP+++
Sbjct: 641 WRLDYCLVSERFVPKVVEHEIRSQCL------GSDHCPITI 675
>sp|A0MTA1|APEX1_DANRE DNA-(apurinic or apyrimidinic site) lyase OS=Danio rerio GN=apex1
PE=1 SV=1
Length = 310
Score = 107 bits (267), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 82/299 (27%), Positives = 143/299 (47%), Gaps = 41/299 (13%)
Query: 30 ETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ-------ILMR 82
E + ++ + +K +WN + L VK N +++ DPD++ LQ L
Sbjct: 43 EKLTSKDGRAANMKITSWNVDGLRAWVKKNG---LDWVRKEDPDILCLQETKCAEKALPA 99
Query: 83 ALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEF 141
++ P ++ W D + Y+G A+L K +P V++ + K +++ +GRVI AEF
Sbjct: 100 DITGMPEYPHKYWAGSEDKEGYSGVAMLCKT--EPLNVTYGIGKE--EHDKEGRVITAEF 155
Query: 142 ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDV 200
F+L+ Y PN R+ WD + ++ KPL+ CGDLNV+H+EID+
Sbjct: 156 PDFFLVTAYVPNA--SRGLVRLDYRKTWDVDFRAYLCGLDARKPLVLCGDLNVAHQEIDL 213
Query: 201 SHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCG 260
+P K + GFT ER+ F +L+ G D++R L+ ++
Sbjct: 214 KNP---------------KGNRKNAGFTPEEREGFTQLLEAG-FTDSFRELYPDQAYAYT 257
Query: 261 FSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319
F W+ + + R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 258 F-WTYMMNARSKNVGWRLDYFVLSSALLPGLCDSKIRNTAM------GSDHCPITLFLA 309
>sp|P0A2X4|EXOA_STRR6 Exodeoxyribonuclease OS=Streptococcus pneumoniae (strain ATCC
BAA-255 / R6) GN=exoA PE=3 SV=1
Length = 275
Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 79/300 (26%), Positives = 129/300 (43%), Gaps = 50/300 (16%)
Query: 42 LKFVTWNANSLLLRVKNNWP------EFSNFITTFDPDVIALQILMRALSSPPFKNYQIW 95
+K ++WN +SL + ++ E + + D+IA+Q + P K+ +I
Sbjct: 1 MKLISWNIDSLNAALTSDSARAKLSQEVLQTLVAENADIIAIQETKLSAKGPTKKHVEIL 60
Query: 96 WSL--------------ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEF 141
L A YAGT L KK P +SF + +GR+I EF
Sbjct: 61 EELFPGYENTWRSSQEPARKGYAGTMFLYKKELTPT-ISFPEIGAPSTMDLEGRIITLEF 119
Query: 142 ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDV 200
+ F++ Y PN G + + R+ WD + E++ + KP++ GD NV+H EID+
Sbjct: 120 DAFFVTQVYTPNAG--DGLKRLEERQVWDAKYAEYLAELDKEKPVLATGDYNVAHNEIDL 177
Query: 201 SHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCG 260
++P N+ PGFT ER F +L G D +R +H D+
Sbjct: 178 ANP------------ASNRR---SPGFTDEERAGFTNLLATG-FTDTFRHVH--GDVPER 219
Query: 261 FSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
++W + K RIDY++ S + D++ +M G DH P+ LE+
Sbjct: 220 YTWWAQRSKTSKINNTGWRIDYWLTSNRIADKVTKSDMIDSGAR------QDHTPIVLEI 273
>sp|P0A2X3|EXOA_STRPN Exodeoxyribonuclease OS=Streptococcus pneumoniae serotype 4 (strain
ATCC BAA-334 / TIGR4) GN=exoA PE=3 SV=1
Length = 275
Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 79/300 (26%), Positives = 129/300 (43%), Gaps = 50/300 (16%)
Query: 42 LKFVTWNANSLLLRVKNNWP------EFSNFITTFDPDVIALQILMRALSSPPFKNYQIW 95
+K ++WN +SL + ++ E + + D+IA+Q + P K+ +I
Sbjct: 1 MKLISWNIDSLNAALTSDSARAKLSQEVLQTLVAENADIIAIQETKLSAKGPTKKHVEIL 60
Query: 96 WSL--------------ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEF 141
L A YAGT L KK P +SF + +GR+I EF
Sbjct: 61 EELFPGYENTWRSSQEPARKGYAGTMFLYKKELTPT-ISFPEIGAPSTMDLEGRIITLEF 119
Query: 142 ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDV 200
+ F++ Y PN G + + R+ WD + E++ + KP++ GD NV+H EID+
Sbjct: 120 DAFFVTQVYTPNAG--DGLKRLEERQVWDAKYAEYLAELDKEKPVLATGDYNVAHNEIDL 177
Query: 201 SHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCG 260
++P N+ PGFT ER F +L G D +R +H D+
Sbjct: 178 ANP------------ASNRR---SPGFTDEERAGFTNLLATG-FTDTFRHVH--GDVPER 219
Query: 261 FSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
++W + K RIDY++ S + D++ +M G DH P+ LE+
Sbjct: 220 YTWWAQRSKTSKINNTGWRIDYWLTSNRIADKVTKSDMIDSGAR------QDHTPIVLEI 273
>sp|P44318|EX3_HAEIN Exodeoxyribonuclease III OS=Haemophilus influenzae (strain ATCC
51907 / DSM 11121 / KW20 / Rd) GN=xthA PE=3 SV=1
Length = 267
Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 72/289 (24%), Positives = 128/289 (44%), Gaps = 43/289 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPFK-----NYQIWW 96
+KF+++N N L R + I + PDVI LQ + A + P++ Y ++
Sbjct: 1 MKFISFNINGLRARPH----QLEAIIEKYQPDVIGLQEIKVADEAFPYEITENLGYHVFH 56
Query: 97 SLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFY----LLNTYAP 152
Y G ALL K+ +PK + + R+I+A+ ET + ++N Y P
Sbjct: 57 HGQKGHY-GVALLTKQ--EPKVIRRGFPTD--NEDAQKRIIMADLETEFGLLTVINGYFP 111
Query: 153 NNGWKEEENSFQRRRKWDKRIQEFVLQCSGK--PLIWCGDLNVSHEEIDVSHPEFFAAAK 210
+ E F + K+ +Q+++ + K P++ GD+N+S ++D+
Sbjct: 112 QGESRAHETKFPAKEKFYADLQQYLEKEHDKSNPILIMGDMNISPSDLDI---------- 161
Query: 211 LNGYVPPNKEDW---GQPGFTIAERKRFGAILKEGRLIDAYRFLH-KEKDMDCGFSWSGN 266
G N++ W G+ F ER + + G L D++R L+ D F +
Sbjct: 162 --GIGDENRKRWLRTGKCSFLPEERAWYQRLYDYG-LEDSFRKLNPTANDKFSWFDYRSK 218
Query: 267 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG-SDHCPV 314
RG +RID+ +VS++L +R C G +++ SDH P+
Sbjct: 219 GFDDNRG--LRIDHILVSQKLAER---CVDVGIALDIRAMEKPSDHAPI 262
>sp|Q9UBZ4|APEX2_HUMAN DNA-(apurinic or apyrimidinic site) lyase 2 OS=Homo sapiens
GN=APEX2 PE=1 SV=1
Length = 518
Score = 55.1 bits (131), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 85/346 (24%), Positives = 127/346 (36%), Gaps = 87/346 (25%)
Query: 42 LKFVTWNANSL---LLRVKNNWPE------FSNFITTFDPDVIALQ---ILMRALSSP-- 87
L+ V+WN N + L V N P + D D++ LQ + AL+ P
Sbjct: 2 LRVVSWNINGIRRPLQGVANQEPSNCAAVAVGRILDELDADIVCLQETKVTRDALTEPLA 61
Query: 88 PFKNYQIWWSLAD--SKYAGTALLVKKCFQPKKVSFSL---------------------- 123
+ Y ++S + S Y+G A K P L
Sbjct: 62 IVEGYNSYFSFSRNRSGYSGVATFCKDNATPVAAEEGLSGLFATQNGDVGCYGNMDEFTQ 121
Query: 124 -EKTALKYEPDGRVILAEFE---------TFYLLNTYAPN-NGWKEEENSFQRRRKWDKR 172
E AL E GR +L + + T L+N Y P+ + + E F+ R +
Sbjct: 122 EELRALDSE--GRALLTQHKIRTWEGKEKTLTLINVYCPHADPGRPERLVFKMRFYRLLQ 179
Query: 173 IQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAER 232
I+ L +G +I GDLN +H ID + A L + +ED G R
Sbjct: 180 IRAEALLAAGSHVIILGDLNTAHRPID-----HWDAVNLECF----EEDPG--------R 222
Query: 233 KRFGAILKE---------GRLIDAYRFLH--KEKDMDCGFSWSGNPIGKYRGKRMRIDYF 281
K ++L G ID+YR +E C WS ++ R+DY
Sbjct: 223 KWMDSLLSNLGCQSASHVGPFIDSYRCFQPKQEGAFTC---WSAVTGARHLNYGSRLDYV 279
Query: 282 IVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEASSDSEK 327
L DR + + L GSDHCPV LS +S +++
Sbjct: 280 -----LGDRTLVIDTFQASFLLPEVMGSDHCPVGAVLSVSSVPAKQ 320
>sp|P0A1A9|EX3_SALTY Exodeoxyribonuclease III OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=xthA PE=3 SV=1
Length = 268
Score = 55.1 bits (131), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 73/290 (25%), Positives = 120/290 (41%), Gaps = 45/290 (15%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQIL-----MRALSSPPFKNYQIWW 96
+KFV++N N L R + + PDVI LQ M L Y +++
Sbjct: 1 MKFVSFNINGLRARPH----QLEAIVEKHQPDVIGLQETKVHDEMFPLEEVAKLGYNVFY 56
Query: 97 SLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFET----FYLLNTYAP 152
Y G ALL K + F + E R+I+AE + ++N Y P
Sbjct: 57 HGQKGHY-GVALLTKATPISVRRGFPDDGE----EAQRRIIMAEIPSPLGNITVINGYFP 111
Query: 153 NNGWKEEENSFQRRRKWDKRIQEFV---LQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAA 209
++ F + ++ + +Q ++ L+C P++ GD+N+S ++D+
Sbjct: 112 QGESRDHPLKFPAKAQFYQNLQNYLETELKCD-NPVLIMGDMNISPTDLDI--------- 161
Query: 210 KLNGYVPPNKEDW---GQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSW-SG 265
G N++ W G+ F ER+ +LK G L+D +R + + MD FSW
Sbjct: 162 ---GIGEENRKRWLRTGKCSFLPEEREWMSRLLKWG-LVDTFRQANPQT-MD-KFSWFDY 215
Query: 266 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG-SDHCPV 314
G + +RID + S L +R C G ++ SDH PV
Sbjct: 216 RSKGFVDNRGLRIDLLLASAPLAER---CAETGIDYDIRSMEKPSDHAPV 262
>sp|P0A1B0|EX3_SALTI Exodeoxyribonuclease III OS=Salmonella typhi GN=xthA PE=3 SV=1
Length = 268
Score = 55.1 bits (131), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 73/290 (25%), Positives = 120/290 (41%), Gaps = 45/290 (15%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQIL-----MRALSSPPFKNYQIWW 96
+KFV++N N L R + + PDVI LQ M L Y +++
Sbjct: 1 MKFVSFNINGLRARPH----QLEAIVEKHQPDVIGLQETKVHDEMFPLEEVAKLGYNVFY 56
Query: 97 SLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFET----FYLLNTYAP 152
Y G ALL K + F + E R+I+AE + ++N Y P
Sbjct: 57 HGQKGHY-GVALLTKATPISVRRGFPDDGE----EAQRRIIMAEIPSPLGNITVINGYFP 111
Query: 153 NNGWKEEENSFQRRRKWDKRIQEFV---LQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAA 209
++ F + ++ + +Q ++ L+C P++ GD+N+S ++D+
Sbjct: 112 QGESRDHPLKFPAKAQFYQNLQNYLETELKCD-NPVLIMGDMNISPTDLDI--------- 161
Query: 210 KLNGYVPPNKEDW---GQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSW-SG 265
G N++ W G+ F ER+ +LK G L+D +R + + MD FSW
Sbjct: 162 ---GIGEENRKRWLRTGKCSFLPEEREWMSRLLKWG-LVDTFRQANPQT-MD-KFSWFDY 215
Query: 266 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG-SDHCPV 314
G + +RID + S L +R C G ++ SDH PV
Sbjct: 216 RSKGFVDNRGLRIDLLLASAPLAER---CAETGIDYDIRSMEKPSDHAPV 262
>sp|P38207|APN2_YEAST DNA-(apurinic or apyrimidinic site) lyase 2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=APN2 PE=1
SV=1
Length = 520
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 89/223 (39%), Gaps = 43/223 (19%)
Query: 124 EKTALKYEPDGRVILAEFET-FYLLNTYAPNNGWKEEENSFQRRRKWD---KRIQEFVLQ 179
EK+AL+ + +GR ++ E +++ Y P N EE R R +R++ L
Sbjct: 154 EKSALELDSEGRCVMVELACGIVIISVYCPANSNSSEEGEMFRLRFLKVLLRRVRN--LD 211
Query: 180 CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQP-----------GFT 228
GK ++ GD+NV + ID +A L + P + G F
Sbjct: 212 KIGKKIVLMGDVNVCRDLID-------SADTLEQFSIPITDPMGGTKLEAQYRDKAIQFI 264
Query: 229 I----AERKRFGAIL---------KEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 275
I R+ F IL K G LID R + + W+ +
Sbjct: 265 INPDTPHRRIFNQILADSLLPDASKRGILIDTTRLIQTRNRLKMYTVWNMLKNLRPSNYG 324
Query: 276 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318
RID+ +VS +L+ I A ++ L GSDHCPV +L
Sbjct: 325 SRIDFILVSLKLERCIKAADI------LPDILGSDHCPVYSDL 361
>sp|Q5E9N9|APEX2_BOVIN DNA-(apurinic or apyrimidinic site) lyase 2 OS=Bos taurus GN=APEX2
PE=2 SV=1
Length = 514
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 85/341 (24%), Positives = 126/341 (36%), Gaps = 87/341 (25%)
Query: 42 LKFVTWNANSL---LLRVKNNWPE------FSNFITTFDPDVIALQ---ILMRALSSP-- 87
L+ V+WN N + L V+ P + D D++ LQ + L+ P
Sbjct: 2 LRLVSWNINGIRSPLQGVRCEEPSSCSAMAMGRILDKLDADIVCLQETKVTRDVLTEPLA 61
Query: 88 PFKNYQIWWSLAD--SKYAGTALLVKKCFQPKKVSFSL---------------------- 123
+ Y ++S + S Y+G A K P L
Sbjct: 62 IIEGYNSYFSFSRNRSGYSGVATFCKDSATPVAAEEGLSGLLSTQNGDVGCYGNMDDFTQ 121
Query: 124 -EKTALKYEPDGRVILAEFE---------TFYLLNTYAPN-NGWKEEENSFQRRRKWDKR 172
E AL E GR +L + + T L+N Y P+ + K E +F+ R +
Sbjct: 122 EELRALDSE--GRALLTQHKICTWEGKEKTLTLINVYCPHADPGKPERLTFKMRFYRLLQ 179
Query: 173 IQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAER 232
I+ L +G +I GDLN +H ID + A + + +ED G R
Sbjct: 180 IRAEALLAAGSHVIILGDLNTAHRPID-----HWDAVNMECF----EEDPG--------R 222
Query: 233 KRFGAILKE---------GRLIDAYR-FLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYF 281
K +L G ID+YR F K+K F+ WS ++ R+DY
Sbjct: 223 KWMDGLLSNLGCESGSHMGPFIDSYRCFQPKQKG---AFTCWSTVSGARHLNYGSRLDYV 279
Query: 282 IVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEAS 322
L DR + + L GSDHCPV LS +S
Sbjct: 280 -----LGDRTLVIDTFQSSFLLPEVMGSDHCPVGAVLSVSS 315
>sp|Q68G58|APEX2_MOUSE DNA-(apurinic or apyrimidinic site) lyase 2 OS=Mus musculus
GN=Apex2 PE=1 SV=1
Length = 516
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 86/208 (41%), Gaps = 37/208 (17%)
Query: 124 EKTALKYEPDGRVILAEFETFYLLNTYAPN-NGWKEEENSFQRRRKWDKRIQEFVLQCSG 182
E AL + R + + +T L+N Y P+ + K E +F+ R +++ L +G
Sbjct: 129 EGRALLTQHKIRTLEGKEKTLTLINVYCPHADPGKPERLTFKMRFYRLLQMRAEALLAAG 188
Query: 183 KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE- 241
+I GDLN +H ID A+ L + +ED G RK +L
Sbjct: 189 SHVIILGDLNTAHRPID-----HCDASSLECF----EEDPG--------RKWMDGLLSNP 231
Query: 242 --------GRLIDAYRFLH--KEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRI 291
G +D+YR+LH +++ C WS ++ R+DY L DR
Sbjct: 232 GDEAGPHIGLFMDSYRYLHPKQQRAFTC---WSVVSGARHLNYGSRLDYV-----LGDRA 283
Query: 292 IACEMQGHGIELEGFYGSDHCPVSLELS 319
+ + L GSDHCPV L+
Sbjct: 284 LVIDTFQASFLLPEVMGSDHCPVGAVLN 311
>sp|P09030|EX3_ECOLI Exodeoxyribonuclease III OS=Escherichia coli (strain K12) GN=xthA
PE=1 SV=4
Length = 268
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 70/290 (24%), Positives = 116/290 (40%), Gaps = 45/290 (15%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQIL-----MRALSSPPFKNYQIWW 96
+KFV++N N L R + + PDVI LQ M L Y +++
Sbjct: 1 MKFVSFNINGLRARPH----QLEAIVEKHQPDVIGLQETKVHDDMFPLEEVAKLGYNVFY 56
Query: 97 SLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFY----LLNTYAP 152
Y G ALL K+ + F + E R+I+AE + ++N Y P
Sbjct: 57 HGQKGHY-GVALLTKETPIAVRRGFPGDDE----EAQRRIIMAEIPSLLGNVTVINGYFP 111
Query: 153 NNGWKEEENSFQRRRKWDKRIQEFVLQCSGK---PLIWCGDLNVSHEEIDVSHPEFFAAA 209
++ F + ++ + +Q + L+ K P++ GD+N+S ++D+
Sbjct: 112 QGESRDHPIKFPAKAQFYQNLQNY-LETELKRDNPVLIMGDMNISPTDLDI--------- 161
Query: 210 KLNGYVPPNKEDW---GQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 266
G N++ W G+ F ER+ ++ G L+D +R H FSW
Sbjct: 162 ---GIGEENRKRWLRTGKCSFLPEEREWMDRLMSWG-LVDTFR--HANPQTADRFSWFDY 215
Query: 267 PIGKYRGKR-MRIDYFIVSEELKDRIIACEMQGHGIELEGFYG-SDHCPV 314
+ R +RID + S+ L + C G E+ SDH PV
Sbjct: 216 RSKGFDDNRGLRIDLLLASQPLAE---CCVETGIDYEIRSMEKPSDHAPV 262
>sp|P87175|APN2_SCHPO DNA-(apurinic or apyrimidinic site) lyase 2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=apn2 PE=1 SV=1
Length = 523
Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 89/211 (42%), Gaps = 28/211 (13%)
Query: 114 FQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRI 173
F PK + KTA + +GR IL +F+ F L+ Y P N EN + RR + K +
Sbjct: 118 FFPKDID---RKTANWIDSEGRCILLDFQMFILIGVYCPVNS---GENRLEYRRAFYKAL 171
Query: 174 QEFV---LQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIA 230
+E + ++ + +I GD+N+ ID + + L + +++ W + +
Sbjct: 172 RERIERLIKEGNRKIILVGDVNILCNPIDTADQKDIIRESLIPSIMESRQ-WIRDLLLPS 230
Query: 231 ERKRFGAILKEGRLIDAYRFLHKEKDM-DCGFSWSGNPIGKYRGKRMRIDYFIVSEELKD 289
I GR+ R K M C W+ + RIDY + + +L
Sbjct: 231 RLGLLLDI---GRIQHPTR-----KGMFTC---WNTRLNTRPTNYGTRIDYTLATPDLLP 279
Query: 290 RIIACEMQGHGIELEGFYGSDHCPVSLELSE 320
+ ++ + GSDHCPV L+L E
Sbjct: 280 WVQDADIMAEVM------GSDHCPVYLDLKE 304
>sp|Q9XWG3|TYDP2_CAEEL 5'-tyrosyl-DNA phosphodiesterase OS=Caenorhabditis elegans
GN=Y63D3A.4 PE=1 SV=1
Length = 362
Score = 36.6 bits (83), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 81/181 (44%), Gaps = 27/181 (14%)
Query: 33 SEENSKKDPLKFVTWNAN-----SLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSP 87
+ E+ K + ++WN + SLL R+K ++ + +PD++ LQ ++ +P
Sbjct: 111 TAEDLKGFEVSVMSWNIDGLDGRSLLTRMK----AVAHIVKNVNPDILFLQEVVDRDLAP 166
Query: 88 PFKN---YQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRV-ILAEFE- 142
K Y+I++S +Y TA+LV K F +K + ++ G L E
Sbjct: 167 IDKLQSLYKIYYSNKGCQYY-TAILVSKMFDVEK------HDVIHFQNSGMYRTLQILEG 219
Query: 143 -----TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEE 197
+LLNT+ + + Q DK ++E + Q G + + GDLN+ EE
Sbjct: 220 SIGGLKVFLLNTHLESTREHRPQRCAQFGFCMDK-VREIIAQNPGALVFFGGDLNLRDEE 278
Query: 198 I 198
+
Sbjct: 279 V 279
>sp|Q8BTF7|DNLI4_MOUSE DNA ligase 4 OS=Mus musculus GN=Lig4 PE=2 SV=2
Length = 911
Score = 35.8 bits (81), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 256 DMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 309
D++C +SW +P+ +R + +D + V +L RI A + +EL F+G+
Sbjct: 798 DLECRYSWDHSPLSMFRHYTIYLDLYAVINDLSSRIEATRLGITALELR-FHGA 850
>sp|Q5SSE9|ABCAD_MOUSE ATP-binding cassette sub-family A member 13 OS=Mus musculus GN=Abca13
PE=2 SV=1
Length = 5034
Score = 35.4 bits (80), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 214 YVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 269
++P N DW Q G T+ GA+L E R++++ R + GFS IG
Sbjct: 4393 HLPANAVDWRQYGITLYSHPYGGALLNEDRILESIRQCGVALCIVLGFSILSASIG 4448
>sp|Q9UTK6|YKR3_SCHPO G-patch domain-containing protein C1486.03 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC1486.03c PE=3
SV=1
Length = 797
Score = 32.0 bits (71), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 10/59 (16%)
Query: 238 ILKEGRLIDAYRFLHKEKDM--------DCGFSWSGNPIGKYRGKRMRIDYFIVSEELK 288
IL+EGRL ++R KE+DM + GF SG IG R +R I + SE++K
Sbjct: 20 ILEEGRLRPSFRGQQKERDMLGIFGEEDEDGFHNSG--IGSARLRRKNISFVEKSEQVK 76
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.135 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 133,083,957
Number of Sequences: 539616
Number of extensions: 5826114
Number of successful extensions: 13202
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 13135
Number of HSP's gapped (non-prelim): 33
length of query: 335
length of database: 191,569,459
effective HSP length: 118
effective length of query: 217
effective length of database: 127,894,771
effective search space: 27753165307
effective search space used: 27753165307
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)