Query 019834
Match_columns 335
No_of_seqs 121 out of 1341
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 04:54:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019834.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019834hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0708 XthA Exonuclease III [ 100.0 3.8E-47 8.2E-52 332.1 21.5 251 42-320 1-261 (261)
2 PRK13911 exodeoxyribonuclease 100.0 9.3E-43 2E-47 310.0 26.4 245 42-319 1-250 (250)
3 PRK11756 exonuclease III; Prov 100.0 5.1E-38 1.1E-42 284.3 25.1 256 42-320 1-268 (268)
4 TIGR00195 exoDNase_III exodeox 100.0 2.3E-35 5E-40 264.9 25.5 246 42-318 1-254 (254)
5 TIGR00633 xth exodeoxyribonucl 100.0 1E-32 2.2E-37 247.7 25.9 245 42-319 1-255 (255)
6 PRK05421 hypothetical protein; 99.9 3.8E-22 8.2E-27 179.8 19.0 213 36-321 38-262 (263)
7 COG3568 ElsH Metal-dependent h 99.8 3.1E-20 6.8E-25 162.5 16.5 224 41-321 9-258 (259)
8 TIGR03395 sphingomy sphingomye 99.8 2E-19 4.4E-24 163.2 16.9 155 42-197 1-192 (283)
9 PRK15251 cytolethal distending 99.8 3.3E-18 7.3E-23 150.9 19.6 148 38-198 21-200 (271)
10 PTZ00297 pantothenate kinase; 99.8 1E-17 2.2E-22 178.7 23.0 256 38-325 7-319 (1452)
11 PLN03144 Carbon catabolite rep 99.8 6E-18 1.3E-22 165.4 17.7 157 37-198 250-471 (606)
12 KOG2756 Predicted Mg2+-depende 99.8 5.4E-18 1.2E-22 145.8 11.3 239 36-319 94-348 (349)
13 KOG1294 Apurinic/apyrimidinic 99.7 5.9E-17 1.3E-21 147.8 15.9 262 37-320 59-335 (335)
14 KOG3873 Sphingomyelinase famil 99.7 6.2E-18 1.4E-22 151.1 9.1 256 36-328 3-300 (422)
15 PF03372 Exo_endo_phos: Endonu 99.7 5E-17 1.1E-21 143.1 9.7 148 45-197 1-171 (249)
16 smart00476 DNaseIc deoxyribonu 99.6 5.3E-14 1.1E-18 126.3 17.9 150 39-196 15-190 (276)
17 KOG2338 Transcriptional effect 99.5 1.5E-12 3.3E-17 121.9 15.2 152 40-198 115-308 (495)
18 COG3021 Uncharacterized protei 99.4 5.5E-13 1.2E-17 119.1 9.6 145 38-197 85-237 (309)
19 PF14529 Exo_endo_phos_2: Endo 99.4 5.3E-12 1.2E-16 99.5 10.2 119 144-315 1-119 (119)
20 COG5239 CCR4 mRNA deadenylase, 99.1 1E-09 2.2E-14 99.2 13.1 72 41-112 30-131 (378)
21 smart00128 IPPc Inositol polyp 99.0 1.1E-08 2.3E-13 94.3 15.8 145 41-196 4-195 (310)
22 KOG0620 Glucose-repressible al 99.0 1.6E-09 3.5E-14 100.8 8.8 73 41-113 19-116 (361)
23 COG2374 Predicted extracellula 98.7 3E-07 6.6E-12 90.5 15.7 240 36-324 458-792 (798)
24 KOG0566 Inositol-1,4,5-triphos 98.3 1.3E-05 2.9E-10 80.6 13.8 48 278-333 797-844 (1080)
25 COG5411 Phosphatidylinositol 5 96.3 0.015 3.3E-07 54.7 7.7 47 143-194 166-218 (460)
26 PLN03191 Type I inositol-1,4,5 95.9 0.1 2.2E-06 51.7 11.5 52 142-196 420-483 (621)
27 PTZ00312 inositol-1,4,5-tripho 89.4 0.99 2.1E-05 40.7 6.0 55 143-197 81-143 (356)
28 KOG1976 Inositol polyphosphate 68.5 11 0.00024 34.3 5.1 61 138-198 165-233 (391)
29 PLN03191 Type I inositol-1,4,5 64.7 5.8 0.00013 39.7 3.0 40 38-80 106-148 (621)
30 KOG1294 Apurinic/apyrimidinic 37.6 2.4E+02 0.0053 26.4 8.8 60 131-198 10-71 (335)
31 PLN02504 nitrilase 27.4 1.2E+02 0.0025 28.5 5.1 43 36-80 19-66 (346)
32 cd07391 MPP_PF1019 Pyrococcus 26.2 84 0.0018 25.9 3.5 27 167-193 27-53 (172)
33 PRK13286 amiE acylamide amidoh 21.1 1.2E+02 0.0026 28.5 3.8 45 37-81 8-61 (345)
34 COG1407 Predicted ICC-like pho 20.6 1.1E+02 0.0024 27.0 3.2 29 166-194 48-76 (235)
35 TIGR00228 ruvC crossover junct 20.5 1.3E+02 0.0028 24.8 3.4 42 40-81 21-67 (156)
No 1
>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair]
Probab=100.00 E-value=3.8e-47 Score=332.07 Aligned_cols=251 Identities=31% Similarity=0.544 Sum_probs=211.7
Q ss_pred cEEEEEecccchhhhcCChhHHHHHHhhcCCcEEEEeccccccCCCC-----CCCceEEEeccCCCcceEEEEEeecCCC
Q 019834 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPP-----FKNYQIWWSLADSKYAGTALLVKKCFQP 116 (335)
Q Consensus 42 lrI~swNv~~~~~~~~~~~~~l~~~i~~~~~DIv~LQEv~~~~~~~~-----~~~y~~~~~~~~~~~~Gvailsr~~l~~ 116 (335)
|||+||||||++.+. ..+.+++.+.+||||||||++..-.+++ ..||+.++..+.++|+||||+||.+ +
T Consensus 1 mkI~SwNVNgiRar~----~~~~~~l~~~~pDVlclQEtK~~~~~fp~~~~~~~GY~~~~~~gqKgysGVailsr~~--~ 74 (261)
T COG0708 1 MKIASWNVNGLRARL----KKLLDWLEEEQPDVLCLQETKAQDEQFPREELEALGYHHVFNHGQKGYSGVAILSKKP--P 74 (261)
T ss_pred CeeEEEehhhHHHHH----HHHHHHHHHhCCCEEEEEecccCcccCCHhHHhhCCceEEEecCcCCcceEEEEEccC--c
Confidence 799999999999999 5699999999999999999985443322 3699666666789999999999986 4
Q ss_pred ceEEeccccccccCCCCCCEEEEEeCcEEEEEEEcCCCCC-CcchhhHHHHHHHHHHHHHHHHhc--CCCCEEEEccCCC
Q 019834 117 KKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW-KEEENSFQRRRKWDKRIQEFVLQC--SGKPLIWCGDLNV 193 (335)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~r~i~~~~~~~~i~~~y~~~~~~-~~~~~~~~~r~~~~~~l~~~l~~~--~~~p~Il~GDFN~ 193 (335)
..+..+++. ....+.++|+|.+.+..+.|+|+|+|++.. +. +++.+|..|++.+..++.+. .+.|+|+|||||.
T Consensus 75 ~~v~~g~~~-~~~~d~e~R~I~a~~~~~~v~~~Y~PnG~~~~~--~k~~yKl~f~~~l~~~l~~l~~~~~~~vl~GD~NI 151 (261)
T COG0708 75 DDVRRGFPG-EEEDDEEGRVIEAEFDGFRVINLYFPNGSSIGL--EKFDYKLRFLDALRNYLEELLKKGKPVVLCGDFNI 151 (261)
T ss_pred hhhhcCCCC-CccccccCcEEEEEECCEEEEEEEcCCCCCCCC--cchHHHHHHHHHHHHHHHHHhhcCCCEEEeccccc
Confidence 456666653 123566899999999999999999999997 43 55888999999999999873 5699999999999
Q ss_pred CCCcccCcCc-hhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHHHhccCCeeEeeecccCCCCCCceeeeeCCCCCCc-
Q 019834 194 SHEEIDVSHP-EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKY- 271 (335)
Q Consensus 194 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~T~~~~~~~~~- 271 (335)
.|...|.+++ +.|. +.+.++++++++++|..+++.| |+|++|.++|... .||||+++...+
T Consensus 152 ap~~iDv~~~~~~~~-------------n~~~~~f~~eeR~~~~~ll~~G-~~D~~R~~~p~~~---~YTwW~YR~~~~~ 214 (261)
T COG0708 152 APEEIDVANPKKRWL-------------NEGNSGFLPEERAWFRRLLNAG-FVDTFRLFHPEPE---KYTWWDYRANAAR 214 (261)
T ss_pred CCchhcccCchhhhh-------------cCCCCCCCHHHHHHHHHHHHcc-hhhhhHhhCCCCC---cccccccccchhh
Confidence 9999999988 4442 2488999999999999999988 9999999999874 599999987744
Q ss_pred CCCcceeEEEEeChhhhcceeeeeeccCccccCCcCCCCccceEEEEec
Q 019834 272 RGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 320 (335)
Q Consensus 272 ~~~~~riD~i~~s~~~~~~~~~~~v~~~~~~~~~~~~SDH~pV~~~~~~ 320 (335)
.+.|.||||+++|+.+..+++++.+..+.. ....+|||+||.++|++
T Consensus 215 ~n~G~RID~~l~S~~L~~~~~~a~I~~~~r--g~e~pSDHaPV~~e~~~ 261 (261)
T COG0708 215 RNRGWRIDYILVSPALADRLKDAGIDREVR--GWEKPSDHAPVWVELDL 261 (261)
T ss_pred hcCceeEEEEEeCHHHHHHHHhcCccHHHh--cCCCCCCcCcEEEEecC
Confidence 568999999999999999999999986432 23578999999999974
No 2
>PRK13911 exodeoxyribonuclease III; Provisional
Probab=100.00 E-value=9.3e-43 Score=310.00 Aligned_cols=245 Identities=35% Similarity=0.660 Sum_probs=201.3
Q ss_pred cEEEEEecccchhhhcCChhHHHHHHhhcCCcEEEEeccccccCCC--CCCCceEEEecc-CCCcceEEEEEeecCCCce
Q 019834 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSP--PFKNYQIWWSLA-DSKYAGTALLVKKCFQPKK 118 (335)
Q Consensus 42 lrI~swNv~~~~~~~~~~~~~l~~~i~~~~~DIv~LQEv~~~~~~~--~~~~y~~~~~~~-~~~~~Gvailsr~~l~~~~ 118 (335)
|||+||||+|++.+.+ ..+.++|.+++||||||||++....+. ..+||+.++... .++|+||||++|.+ |..
T Consensus 1 mki~swNVNgir~~~~---~~~~~~l~~~~~DIiclQEtK~~~~~~~~~~~gY~~~~~~~~~kgy~GVAi~~k~~--~~~ 75 (250)
T PRK13911 1 MKLISWNVNGLRACMT---KGFMDFFNSVDADVFCIQESKMQQEQNTFEFKGYFDFWNCAIKKGYSGVVTFTKKE--PLS 75 (250)
T ss_pred CEEEEEEeCChhHhhh---hhHHHHHHhcCCCEEEEEeecccccccccccCCceEEEEecccCccceEEEEEcCC--chh
Confidence 7999999999998874 368899999999999999998543332 347998776533 56799999999985 556
Q ss_pred EEeccccccccCCCCCCEEEEEeCcEEEEEEEcCCCCCCcchhhHHHHHHHHHHHHHHHHhc-CCCCEEEEccCCCCCCc
Q 019834 119 VSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEE 197 (335)
Q Consensus 119 ~~~~~~~~~~~~~~~~r~i~~~~~~~~i~~~y~~~~~~~~~~~~~~~r~~~~~~l~~~l~~~-~~~p~Il~GDFN~~~~~ 197 (335)
+.+.++ ....+.+||+|.+++..+.|+|+|+|+++.+. +++..|.+|++.+.+++.+. .+.++|+|||||..|..
T Consensus 76 v~~~~~--~~~~d~eGR~I~~~~~~~~l~nvY~Pn~~~~~--~r~~~K~~~~~~~~~~l~~l~~~~~~Ii~GD~Nva~~~ 151 (250)
T PRK13911 76 VSYGIN--IEEHDKEGRVITCEFESFYLVNVYTPNSQQAL--SRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNE 151 (250)
T ss_pred eEEcCC--CCcccccCCEEEEEECCEEEEEEEecCCCCCC--cchHHHHHHHHHHHHHHHhcccCCCEEEEccccCCCCh
Confidence 666664 23446789999999999999999999998654 47778999999999999864 44799999999999999
Q ss_pred ccCcCchhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHHHhccCCeeEeeecccCCCCCCceeeeeCCCCCC-cCCCcc
Q 019834 198 IDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGK-YRGKRM 276 (335)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~T~~~~~~~~-~~~~~~ 276 (335)
.|..++.. ..+..++++.++++|+.+++.| |+|++|.++|... +.||||++..+. ..+.|.
T Consensus 152 ~D~~~~~~---------------~~~~~gf~~~er~~f~~~l~~g-l~D~~R~~~p~~~--~~yTww~~~~~~~~~n~g~ 213 (250)
T PRK13911 152 IDLENPKT---------------NRKNAGFSDEERGKFSELLNAG-FIDTFRYFYPNKE--KAYTWWSYMQQARDKNIGW 213 (250)
T ss_pred hhccChhh---------------cCCCCCcCHHHHHHHHHHHhcC-CeehhhhhCCCCC--CCCccCCCcCCccccCCcc
Confidence 99887652 3467899999999999999975 9999999999853 569999876543 357789
Q ss_pred eeEEEEeChhhhcceeeeeeccCccccCCcCCCCccceEEEEe
Q 019834 277 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319 (335)
Q Consensus 277 riD~i~~s~~~~~~~~~~~v~~~~~~~~~~~~SDH~pV~~~~~ 319 (335)
||||||+|+++..++..+.+.. ....|||+||.++|.
T Consensus 214 RIDyilvs~~~~~~~~~~~i~~------~~~~SDH~Pv~~~~~ 250 (250)
T PRK13911 214 RIDYFLCSNPLKTRLKDALIYK------DILGSDHCPVGLELV 250 (250)
T ss_pred eEEEEEEChHHhhhEEEEEECC------CCCCCCcccEEEEeC
Confidence 9999999999998888888764 246799999999873
No 3
>PRK11756 exonuclease III; Provisional
Probab=100.00 E-value=5.1e-38 Score=284.31 Aligned_cols=256 Identities=24% Similarity=0.366 Sum_probs=187.5
Q ss_pred cEEEEEecccchhhhcCChhHHHHHHhhcCCcEEEEeccccccCCC-----CCCCceEEEeccCCCcceEEEEEeecCCC
Q 019834 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSP-----PFKNYQIWWSLADSKYAGTALLVKKCFQP 116 (335)
Q Consensus 42 lrI~swNv~~~~~~~~~~~~~l~~~i~~~~~DIv~LQEv~~~~~~~-----~~~~y~~~~~~~~~~~~Gvailsr~~l~~ 116 (335)
|||+||||+|++.+. ..+.++|++.+|||||||||+..-... ...||++++. ...++.|+|||||+++
T Consensus 1 mri~T~Nv~g~~~~~----~~i~~~i~~~~pDIi~LQE~~~~~~~~~~~~~~~~gy~~~~~-~~~~~~GvailSr~p~-- 73 (268)
T PRK11756 1 MKFVSFNINGLRARP----HQLEAIIEKHQPDVIGLQETKVHDEMFPLEEVEALGYHVFYH-GQKGHYGVALLSKQTP-- 73 (268)
T ss_pred CEEEEEEcCCHHHHH----HHHHHHHHhcCCCEEEEEecccccccCCHHHHHhcCCEEEEe-CCCCCCEEEEEECCCh--
Confidence 799999999987755 679999999999999999996322111 1258877765 4567899999999974
Q ss_pred ceEEeccccccccCCCCCCEEEEEe----CcEEEEEEEcCCCCCCcchhhHHHHHHHHHHHHHHHHhc--CCCCEEEEcc
Q 019834 117 KKVSFSLEKTALKYEPDGRVILAEF----ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC--SGKPLIWCGD 190 (335)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~r~i~~~~----~~~~i~~~y~~~~~~~~~~~~~~~r~~~~~~l~~~l~~~--~~~p~Il~GD 190 (335)
......++. ......++++.+.+ ..+.++++|+|++.......+...|.+++..|.+++.+. .+.|+|+|||
T Consensus 74 ~~~~~~~~~--~~~~~~~r~l~~~i~~~~g~~~v~n~y~P~~~~~~~~~~~~~r~~~~~~l~~~l~~~~~~~~pvIl~GD 151 (268)
T PRK11756 74 IAVRKGFPT--DDEEAQRRIIMATIPTPNGNLTVINGYFPQGESRDHPTKFPAKRQFYQDLQNYLETELSPDNPLLIMGD 151 (268)
T ss_pred HHeEECCCC--ccccccCCEEEEEEEcCCCCEEEEEEEecCCCCCCcchhHHHHHHHHHHHHHHHHHHhccCCCEEEEee
Confidence 233333321 12234577877766 359999999999875433344555778899999888763 5679999999
Q ss_pred CCCCCCcccCcCchhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHHHhccCCeeEeeecccCCCCCCceeeeeCCCCCC
Q 019834 191 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGK 270 (335)
Q Consensus 191 FN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~T~~~~~~~~ 270 (335)
||..+.+.|..++..-. + .....+..++++.++++++.++..+ |+|+||..+|... ..|||++++.+.
T Consensus 152 fN~~~~~~D~~~~~~~~--~-------~~~~~~~~~~~~~er~~~~~l~~~~-l~D~~R~~~p~~~--~~~T~~~~~~~~ 219 (268)
T PRK11756 152 MNISPTDLDIGIGEENR--K-------RWLRTGKCSFLPEEREWLDRLMDWG-LVDTFRQLNPDVN--DRFSWFDYRSKG 219 (268)
T ss_pred cccCCChhhcCCcccCh--H-------HhcccCCccCCHHHHHHHHHHHhCC-cEeehhhhCCCCC--CcccCcCCcccc
Confidence 99999887775432000 0 0001245678888999999888755 9999999999743 579998876654
Q ss_pred c-CCCcceeEEEEeChhhhcceeeeeeccCccccCCcCCCCccceEEEEec
Q 019834 271 Y-RGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 320 (335)
Q Consensus 271 ~-~~~~~riD~i~~s~~~~~~~~~~~v~~~~~~~~~~~~SDH~pV~~~~~~ 320 (335)
+ .+.+.||||||+|+.+..++.++.+.... ..+.++|||+||.++|++
T Consensus 220 ~~~~~g~RIDyi~~s~~~~~~v~~~~i~~~~--~~~~~~SDH~PV~~~~~~ 268 (268)
T PRK11756 220 FDDNRGLRIDLILATQPLAERCVETGIDYDI--RGMEKPSDHAPIWATFKL 268 (268)
T ss_pred cccCCceEEEEEEeCHHHHhhheEeEEeHHH--hCCCCCCCcccEEEEEeC
Confidence 3 45789999999999999889999987532 123578999999999975
No 4
>TIGR00195 exoDNase_III exodeoxyribonuclease III. The model brings in reverse transcriptases at scores below 50, model also contains eukaryotic apurinic/apyrimidinic endonucleases which group in the same family
Probab=100.00 E-value=2.3e-35 Score=264.92 Aligned_cols=246 Identities=30% Similarity=0.594 Sum_probs=187.3
Q ss_pred cEEEEEecccchhhhcCChhHHHHHHhhcCCcEEEEeccccccCCC-----CCCCceEEEeccCCCcceEEEEEeecCCC
Q 019834 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSP-----PFKNYQIWWSLADSKYAGTALLVKKCFQP 116 (335)
Q Consensus 42 lrI~swNv~~~~~~~~~~~~~l~~~i~~~~~DIv~LQEv~~~~~~~-----~~~~y~~~~~~~~~~~~Gvailsr~~l~~ 116 (335)
|||+||||+|++.+. .++.++|..++||||||||++...... ...||..++.. ..++.|++|++|.. +
T Consensus 1 mri~t~Ni~g~~~~~----~~~~~~l~~~~~DIi~LQE~~~~~~~~~~~~~~~~g~~~~~~~-~~g~~Gvailsr~~--~ 73 (254)
T TIGR00195 1 MKIISWNVNGLRARL----HKGLAWLKENQPDVLCLQETKVQDEQFPLEPFHKEGYHVFFSG-QKGYSGVAIFSKEE--P 73 (254)
T ss_pred CEEEEEEcCcHHHhH----HHHHHHHHhcCCCEEEEEecccchhhCCHHHhhcCCcEEEEec-CCCcceEEEEEcCC--c
Confidence 799999999987665 568999999999999999996432111 12588777663 46788999999964 4
Q ss_pred ceEEeccccccccCCCCCCEEEEEeCcEEEEEEEcCCCCCCcchhhHHHHHHHHHHHHHHHHhc--CCCCEEEEccCCCC
Q 019834 117 KKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC--SGKPLIWCGDLNVS 194 (335)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~r~i~~~~~~~~i~~~y~~~~~~~~~~~~~~~r~~~~~~l~~~l~~~--~~~p~Il~GDFN~~ 194 (335)
+.+...+. ....+..+|++.+++..+.++++|+|++... ..++...|.++++.+.+++.+. .+.|+|+|||||..
T Consensus 74 ~~~~~~~~--~~~~~~~~r~i~~~~~~~~l~~~~~p~~~~~-~~~~~~~r~~~~~~l~~~~~~~~~~~~pvIi~GDfN~~ 150 (254)
T TIGR00195 74 LSVRRGFG--VEEEDAEGRIIMAEFDSFLVINGYFPNGSRD-DSEKLPYKLQWLEALQNYLEKLVDKDKPVLICGDMNIA 150 (254)
T ss_pred ceEEECCC--CcccccCCCEEEEEECCEEEEEEEccCCCCC-CCccHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecccC
Confidence 44444333 1223457889899999999999999996432 2245667889999999998774 45799999999999
Q ss_pred CCcccCcCchhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHHHhccCCeeEeeecccCCCCCCceeeeeCCCCCCc-CC
Q 019834 195 HEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKY-RG 273 (335)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~T~~~~~~~~~-~~ 273 (335)
+...|..++. ...+..++++.+++.++.+++.+ |+|+|+..+|.. +.|||++.+.... .+
T Consensus 151 ~~~~d~~~~~---------------~~~~~~~~~~~e~~~~~~l~~~~-l~D~~r~~~~~~---~~~T~~~~~~~~~~~~ 211 (254)
T TIGR00195 151 PTEIDLHSPD---------------ENRNHTGFLPEEREWLDRLLEAG-LVDTFRKFNPDE---GAYSWWDYRTKARDRN 211 (254)
T ss_pred CChhhccChh---------------hcCCCcCcChHHHHHHHHHHHcC-CEeeecccCCCC---CCCcccCCcCCccccC
Confidence 9887776543 22356678888899999998755 999999998864 5799987654332 35
Q ss_pred CcceeEEEEeChhhhcceeeeeeccCccccCCcCCCCccceEEEE
Q 019834 274 KRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 318 (335)
Q Consensus 274 ~~~riD~i~~s~~~~~~~~~~~v~~~~~~~~~~~~SDH~pV~~~~ 318 (335)
.+.||||||+|+++..++.++.+..... ...++|||+||.++|
T Consensus 212 ~g~RID~i~~s~~~~~~v~~~~i~~~~~--~~~~~SDH~Pv~~~~ 254 (254)
T TIGR00195 212 RGWRIDYFLVSEPLKERCVDCGIDYDIR--GSEKPSDHCPVVLEF 254 (254)
T ss_pred CceEEEEEEECHHHHhhhhEEEEcHHHh--cCCCCCCcccEEEeC
Confidence 6789999999999998899998875321 124789999999975
No 5
>TIGR00633 xth exodeoxyribonuclease III (xth). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1e-32 Score=247.69 Aligned_cols=245 Identities=33% Similarity=0.644 Sum_probs=177.8
Q ss_pred cEEEEEecccchhhhcCChhHH-HHHHhhcCCcEEEEeccccccCC-----CCCCCceEEEeccC-CCcceEEEEEeecC
Q 019834 42 LKFVTWNANSLLLRVKNNWPEF-SNFITTFDPDVIALQILMRALSS-----PPFKNYQIWWSLAD-SKYAGTALLVKKCF 114 (335)
Q Consensus 42 lrI~swNv~~~~~~~~~~~~~l-~~~i~~~~~DIv~LQEv~~~~~~-----~~~~~y~~~~~~~~-~~~~Gvailsr~~l 114 (335)
|||+||||+|++.+.+ ++ +++|.+.+||||||||++..... ....+|..++.... .++.|++|++|.++
T Consensus 1 lri~t~Nv~g~~~~~~----~~~~~~l~~~~~DIv~LQE~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~G~ailsr~~~ 76 (255)
T TIGR00633 1 MKIISWNVNGLRARLH----KLFLDWLKEEQPDVLCLQETKVADEQFPAELFEELGYHVFFHGAKSKGYSGVAILSKVEP 76 (255)
T ss_pred CEEEEEecccHHHHhh----ccHHHHHHhcCCCEEEEEeccCchhhCCHhHhccCCceEEEeecccCCcceEEEEEcCCc
Confidence 7999999999987663 45 89999999999999999754211 12358877665443 36789999999874
Q ss_pred CCceEEeccccccccCCCCCCEEEEEeCcEEEEEEEcCCCCCCcchhhHHHHHHHHHHHHHHHHh--cCCCCEEEEccCC
Q 019834 115 QPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ--CSGKPLIWCGDLN 192 (335)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~r~i~~~~~~~~i~~~y~~~~~~~~~~~~~~~r~~~~~~l~~~l~~--~~~~p~Il~GDFN 192 (335)
. .+...+. ....+..+|.+.+...++.|+++|+|+...... .+...|..+++.+.+.+.+ ..+.|+|+|||||
T Consensus 77 ~--~~~~~~~--~~~~~~~~r~l~~~~~~~~i~~vy~p~~~~~~~-~~~~~r~~~~~~l~~~~~~~~~~~~~~Il~GDFN 151 (255)
T TIGR00633 77 L--DVRYGFG--GEEHDEEGRVITAEFDGFTVVNVYVPNGGSRGL-ERLEYKLQFWDALFQYYEKELDAGKPVIICGDMN 151 (255)
T ss_pred c--eEEECCC--CCcccCCCcEEEEEECCEEEEEEEccCCCCCCc-hhHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecc
Confidence 3 2223222 122345678888888899999999998763222 3445577788888776644 2567999999999
Q ss_pred CCCCcccCcCchhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHHHhccCCeeEeeecccCCCCCCceeeeeCCCCCC-c
Q 019834 193 VSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGK-Y 271 (335)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~T~~~~~~~~-~ 271 (335)
+.+...|..++. .+.+..++.+.++..++.+++.+ |.|+|+..+|... +.|||++..... .
T Consensus 152 ~~~~~~d~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~-l~D~~~~~~~~~~--~~~T~~~~~~~~~~ 213 (255)
T TIGR00633 152 VAHTEIDLGNPK---------------ENKGNAGFTPEEREWFDELLEAG-LVDTFRHFNPDTE--GAYTWWDYRSGARD 213 (255)
T ss_pred cCCChHHccChh---------------hcCCCCCcCHHHHHHHHHHHHcC-CEecchhhCCCCC--CcCcCcCCccCccc
Confidence 998876665543 22355667777778899988854 9999999988753 469998765332 2
Q ss_pred CCCcceeEEEEeChhhhcceeeeeeccCccccCCcCCCCccceEEEEe
Q 019834 272 RGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319 (335)
Q Consensus 272 ~~~~~riD~i~~s~~~~~~~~~~~v~~~~~~~~~~~~SDH~pV~~~~~ 319 (335)
.+.+.||||||++.++..++.++.+... ...|||+||.++|+
T Consensus 214 ~~~~~rID~i~~s~~~~~~~~~~~i~~~------~~~SDH~pv~~~~~ 255 (255)
T TIGR00633 214 RNRGWRIDYFLVSEPLAERVVDSYIDSE------IRGSDHCPIVLELD 255 (255)
T ss_pred cCCceEEEEEEECHHHHhhhcEeEECCC------CCCCCcccEEEEEC
Confidence 3456899999999998877788877642 23499999999984
No 6
>PRK05421 hypothetical protein; Provisional
Probab=99.89 E-value=3.8e-22 Score=179.80 Aligned_cols=213 Identities=16% Similarity=0.161 Sum_probs=122.7
Q ss_pred CCCCCccEEEEEecccchhhhcCChhHHHHHHhhcCCcEEEEeccccccC--CC-CCCCceEEEec---cCCCcceEEEE
Q 019834 36 NSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALS--SP-PFKNYQIWWSL---ADSKYAGTALL 109 (335)
Q Consensus 36 ~~~~~~lrI~swNv~~~~~~~~~~~~~l~~~i~~~~~DIv~LQEv~~~~~--~~-~~~~y~~~~~~---~~~~~~Gvail 109 (335)
....++|||+||||++..... +....+.+ ..+|||||||||..... .. ...++++.+.. ...++.|++|+
T Consensus 38 ~~~~~~lri~t~NI~~~~~~~---~~~~l~~l-~~~~DiI~LQEv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvaiL 113 (263)
T PRK05421 38 LSTEERLRLLVWNIYKQQRAG---WLSVLKNL-GKDADLVLLQEAQTTPELVQFATANYLAADQAPAFVLPQHPSGVMTL 113 (263)
T ss_pred cCcCCceeEEEEEcccccccc---HHHHHHHh-ccCCCEEEEEecccCcchHHHhhcccchHHhccccccCCCccceeEe
Confidence 334578999999998776432 13455555 88999999999963221 11 11233322221 13457899999
Q ss_pred EeecCCCceEEeccccccccCCCCCC-EEEE--Ee---CcEEEEEEEcCCCCCCcchhhHHHHHHHHHHHHHHHHhcCCC
Q 019834 110 VKKCFQPKKVSFSLEKTALKYEPDGR-VILA--EF---ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK 183 (335)
Q Consensus 110 sr~~l~~~~~~~~~~~~~~~~~~~~r-~i~~--~~---~~~~i~~~y~~~~~~~~~~~~~~~r~~~~~~l~~~l~~~~~~ 183 (335)
||+++.. ...+..... ....+| ++.+ +. ..+.|+|+|+.+.... ...|..+++.+.+.+.+. ..
T Consensus 114 SR~pi~~---~~~~~~~~~-~~~~~r~~l~a~~~~~~g~~l~v~ntHl~~~~~~-----~~~r~~q~~~l~~~~~~~-~~ 183 (263)
T PRK05421 114 SKAHPVY---CCPLREREP-WLRLPKSALITEYPLPNGRTLLVVNIHAINFSLG-----VDVYSKQLEPIGDQIAHH-SG 183 (263)
T ss_pred eecccce---eeccCCCCc-cccCcceeEEEEEEeCCCCEEEEEEECccccCcC-----hHHHHHHHHHHHHHHHhC-CC
Confidence 9997432 121211000 011122 2222 22 2599999999765422 123667888888888654 46
Q ss_pred CEEEEccCCCCCCcccCcCchhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHHHhccCCeeEeeecccCCCCCCceeee
Q 019834 184 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSW 263 (335)
Q Consensus 184 p~Il~GDFN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~T~ 263 (335)
|+|+|||||..... ....+..+....++.+.+ .+... ..
T Consensus 184 p~Il~GDFN~~~~~---------------------------------~~~~l~~~~~~~~l~~~~---~~~~~---~~-- 222 (263)
T PRK05421 184 PVILAGDFNTWSRK---------------------------------RMNALKRFARELGLKEVR---FTDDQ---RR-- 222 (263)
T ss_pred CEEEEcccccCccc---------------------------------chHHHHHHHHHcCCCccC---cCCcc---cc--
Confidence 99999999973221 012334444433344431 11110 00
Q ss_pred eCCCCCCcCCCcceeEEEEeChhhhcceeeeeeccCccccCCcCCCCccceEEEEecC
Q 019834 264 SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEA 321 (335)
Q Consensus 264 ~~~~~~~~~~~~~riD~i~~s~~~~~~~~~~~v~~~~~~~~~~~~SDH~pV~~~~~~~ 321 (335)
..+ +.+|||||++ ++ .+.++.+.. ...|||+||+++|.+.
T Consensus 223 -----~~~---~~~ID~I~~~-~~--~v~~~~v~~-------~~~SDH~Pv~a~l~l~ 262 (263)
T PRK05421 223 -----RAF---GRPLDFVFYR-GL--NVSKASVLV-------TRASDHNPLLVEFSLK 262 (263)
T ss_pred -----ccc---CCCcceEEEC-Cc--EEEEEEcCC-------CCCCCccCEEEEEEec
Confidence 001 3699999985 43 466666653 3689999999999875
No 7
>COG3568 ElsH Metal-dependent hydrolase [General function prediction only]
Probab=99.85 E-value=3.1e-20 Score=162.51 Aligned_cols=224 Identities=19% Similarity=0.222 Sum_probs=128.8
Q ss_pred ccEEEEEecccc-hh-hhcCChhHHHHHHhhcCCcEEEEeccccccC--CCCC----------CCceEEEec------cC
Q 019834 41 PLKFVTWNANSL-LL-RVKNNWPEFSNFITTFDPDVIALQILMRALS--SPPF----------KNYQIWWSL------AD 100 (335)
Q Consensus 41 ~lrI~swNv~~~-~~-~~~~~~~~l~~~i~~~~~DIv~LQEv~~~~~--~~~~----------~~y~~~~~~------~~ 100 (335)
.++|+|||++.. .. ..+.++..+.+.|.+..+|||||||+..... ...+ .+.++++.. ..
T Consensus 9 ~~~v~TyNih~~~~~~d~r~~~~r~~~~i~~~~~Div~LQEv~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 88 (259)
T COG3568 9 RFKVLTYNIHKGFGAFDRRFDLPRIAEVIREVGADIVALQEVDGAFGRHRDGLLDLPHLLGRLGLAPYWWSGAAFGAVYG 88 (259)
T ss_pred eeEEEEEEEEEccCccCceecHHHHHHHHHhhccCeeeeecccccccccccccchhHHHHHHhcCCccccchhhhhhhcc
Confidence 389999999543 33 3444568899999999999999999974221 1100 111222221 12
Q ss_pred CCcceEEEEEeecCCCceEEeccccccccCCCCCC-EE--EEE---eCcEEEEEEEcCCCCCCcchhhHHHHHHHHHHHH
Q 019834 101 SKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGR-VI--LAE---FETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQ 174 (335)
Q Consensus 101 ~~~~Gvailsr~~l~~~~~~~~~~~~~~~~~~~~r-~i--~~~---~~~~~i~~~y~~~~~~~~~~~~~~~r~~~~~~l~ 174 (335)
.+..|++|||+.++..+. ...++. . ...+.| .+ .++ ++++.|+|+|+.-.. ..|.+++..|.
T Consensus 89 ~~~~GnaiLS~~pi~~v~-~~~lp~--~-~~~~~Rgal~a~~~~~~g~~l~V~~~HL~l~~--------~~R~~Q~~~L~ 156 (259)
T COG3568 89 EGQHGNAILSRLPIRDVE-NLALPD--P-TGLEPRGALLAEIELPGGKPLRVINAHLGLSE--------ESRLRQAAALL 156 (259)
T ss_pred cceeeeEEEecCcccchh-hccCCC--C-CCCCCceeEEEEEEcCCCCEEEEEEEeccccH--------HHHHHHHHHHH
Confidence 336799999988642221 222221 0 011222 23 223 248999999998332 23777888887
Q ss_pred HHHHhcCCCCEEEEccCCCCCCcccCcCchhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHHHhccCCeeEeeecccCC
Q 019834 175 EFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKE 254 (335)
Q Consensus 175 ~~l~~~~~~p~Il~GDFN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~ 254 (335)
+.+.-....|+|+|||||+.+.+.++.-.. .+.. .. ...+.+.+....+.
T Consensus 157 ~~~~l~~~~p~vl~GDFN~~p~s~~yr~~~-------------------~~~~--------~~---~~~~~~~~~~a~~~ 206 (259)
T COG3568 157 ALAGLPALNPTVLMGDFNNEPGSAEYRLAA-------------------RSPL--------NA---QAALTGAFAPAVGR 206 (259)
T ss_pred hhccCcccCceEEEccCCCCCCCccceecc-------------------CCch--------hh---ccccccccCcccCc
Confidence 743323445999999999998886653211 0000 00 01122333222211
Q ss_pred CCCCceeeeeCCCCCCcCCCcceeEEEEeChhhhcceeeeeeccCccccCCcCCCCccceEEEEecC
Q 019834 255 KDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEA 321 (335)
Q Consensus 255 ~~~~~~~T~~~~~~~~~~~~~~riD~i~~s~~~~~~~~~~~v~~~~~~~~~~~~SDH~pV~~~~~~~ 321 (335)
. .-||.+.+. ..+|||||+++++. +..+.+..+.. +...|||+||.++|.+.
T Consensus 207 ~----~~tfps~~p------~lriD~Ifvs~~~~--i~~~~v~~~~~---a~~aSDHlPl~aeL~~~ 258 (259)
T COG3568 207 T----IRTFPSNTP------LLRLDRIFVSKELA--IRSVHVLTDRL---ARVASDHLPLLAELRLK 258 (259)
T ss_pred c----cCCCCCCCc------cccccEEEecCccc--EEEEEeecCCC---ccccccccceEEEEecC
Confidence 0 124443211 25999999999886 44555554321 34689999999999875
No 8
>TIGR03395 sphingomy sphingomyelin phosphodiesterase. Members of this family are bacterial proteins that act as sphingomyelin phosphodiesterase (EC 3.1.4.12), also called sphingomyelinase. Some members of this family have been shown to act as hemolysins.
Probab=99.83 E-value=2e-19 Score=163.23 Aligned_cols=155 Identities=16% Similarity=0.098 Sum_probs=89.4
Q ss_pred cEEEEEecccchh------hhcCChhHHHHHHhhcCCcEEEEeccccc-----cCCCCCCCceEEE--ec----------
Q 019834 42 LKFVTWNANSLLL------RVKNNWPEFSNFITTFDPDVIALQILMRA-----LSSPPFKNYQIWW--SL---------- 98 (335)
Q Consensus 42 lrI~swNv~~~~~------~~~~~~~~l~~~i~~~~~DIv~LQEv~~~-----~~~~~~~~y~~~~--~~---------- 98 (335)
||||||||..+.. ....|.+.+...+...+||||||||+... +.+.....|.+.. ..
T Consensus 1 lkVmtyNv~~l~~~~~~~~g~~~R~~~i~~~~~~~~~DVV~LQEv~~~~~~~~l~~~L~~~yp~~~~~~g~~~~g~~~~~ 80 (283)
T TIGR03395 1 IKILSHNVYMLSTNLYPNWGQMERADLIASADYIKNQDVVILNEAFDTSASKRLLDNLREEYPYQTDVIGRSKKGWDKTL 80 (283)
T ss_pred CeEEEEEeeeecccccCCccHhHHHHHHHHhhcccCCCEEEEecccchHHHHHHHHHHHhhCCceEeecccccccchhcc
Confidence 6899999964321 12233366777777889999999999521 1111112231111 10
Q ss_pred -----cCCCcceEEEEEeecCCCceE-EeccccccccCCCCCCEEEEEe----CcEEEEEEEcCCCCCCcchhh-HHHHH
Q 019834 99 -----ADSKYAGTALLVKKCFQPKKV-SFSLEKTALKYEPDGRVILAEF----ETFYLLNTYAPNNGWKEEENS-FQRRR 167 (335)
Q Consensus 99 -----~~~~~~Gvailsr~~l~~~~~-~~~~~~~~~~~~~~~r~i~~~~----~~~~i~~~y~~~~~~~~~~~~-~~~r~ 167 (335)
......|++||||+||..... .+......+... ...++.+++ ..+.|+++|+.+......... ...|.
T Consensus 81 g~~~~~~~~~~G~~iLSr~Pi~~~~~~~f~~~~~~d~~~-~kg~l~a~i~~~g~~~~v~~THL~~~~~~~~~~~~~~~R~ 159 (283)
T TIGR03395 81 GNYSSSALEDGGVAIVSKWPIEEKIQYIFNKGCGADNLS-NKGFAYVKINKNGKKFHVIGTHLQAQDSMCSKLGPASIRA 159 (283)
T ss_pred ccccccCccCCEEEEEECCCccccEEEEccCCCCCcccc-CCceEEEEEecCCeEEEEEEeCCCCCcccccccccHHHHH
Confidence 012256999999998643321 122111111111 222443333 369999999987543211011 24588
Q ss_pred HHHHHHHHHHHhc---CCCCEEEEccCCCCCCc
Q 019834 168 KWDKRIQEFVLQC---SGKPLIWCGDLNVSHEE 197 (335)
Q Consensus 168 ~~~~~l~~~l~~~---~~~p~Il~GDFN~~~~~ 197 (335)
.+++.|.+++.+. .+.|+||+||||..+.+
T Consensus 160 ~Q~~~i~~~i~~~~~~~~~pvIl~GDfN~~~~s 192 (283)
T TIGR03395 160 NQLNEIQDFIDSKNIPKDETVLIGGDLNVNKGS 192 (283)
T ss_pred HHHHHHHHHHhhccCCCCceEEEEeeCCCCCCC
Confidence 9999999999753 35789999999987654
No 9
>PRK15251 cytolethal distending toxin subunit CdtB; Provisional
Probab=99.81 E-value=3.3e-18 Score=150.95 Aligned_cols=148 Identities=14% Similarity=0.162 Sum_probs=99.5
Q ss_pred CCCccEEEEEecccchhhhcCChh-HHHHHHhhc-CCcEEEEeccccc--c--------CCC----C------------C
Q 019834 38 KKDPLKFVTWNANSLLLRVKNNWP-EFSNFITTF-DPDVIALQILMRA--L--------SSP----P------------F 89 (335)
Q Consensus 38 ~~~~lrI~swNv~~~~~~~~~~~~-~l~~~i~~~-~~DIv~LQEv~~~--~--------~~~----~------------~ 89 (335)
.-..++++|||+.|-....+.+|. .+..++... .+||+++||+... . ... . .
T Consensus 21 ~~~~~~~~twn~qg~s~~~~~kw~~~v~~l~~~~~~~DIla~QEags~p~~a~~~~~~~~~~g~~~~v~ey~w~l~~~sr 100 (271)
T PRK15251 21 NLEDYKVATWNLQGSSASTESKWNVNVRQLLSGENPADILMVQEAGSLPSSAVPTGRHVQPGGVGIPIDEYTWNLGTRSR 100 (271)
T ss_pred ccccceEEEeecCCCCCCChhhhhhhHHHHhcCCCCCCEEEEEecCCCccccccccccccccccccCcccEEEEccCccC
Confidence 446789999999998766666676 467777764 6999999998411 0 110 1 1
Q ss_pred CCceEEEecc---CCCcceEEEEEeecCCCceEEeccccccccCCCCCCEEEEEeCcEEEEEEEcCCCCCCcchhhHHHH
Q 019834 90 KNYQIWWSLA---DSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRR 166 (335)
Q Consensus 90 ~~y~~~~~~~---~~~~~Gvailsr~~l~~~~~~~~~~~~~~~~~~~~r~i~~~~~~~~i~~~y~~~~~~~~~~~~~~~r 166 (335)
+++.++|... ..+..|+||+||.+.. ..+.++. . ....+.++.++++.+.++++|+.+.+.. ++
T Consensus 101 pgm~YiY~~aiD~~ggr~glAIlSr~~a~---~~~~l~~--p-~~~~Rpilgi~i~~~~ffstH~~a~~~~-------da 167 (271)
T PRK15251 101 PNQVYIYYSRVDVGANRVNLAIVSRRRAD---EVIVLRP--P-TVASRPIIGIRIGNDVFFSIHALANGGT-------DA 167 (271)
T ss_pred CCceEEEEecccCCCCceeEEEEeccccc---ceEEecC--C-CCcccceEEEEecCeEEEEeeecCCCCc-------cH
Confidence 2343333321 1246799999999732 2333331 1 2335567888888899999999988522 15
Q ss_pred HHHHHHHHHHHH-hcCCCCEEEEccCCCCCCcc
Q 019834 167 RKWDKRIQEFVL-QCSGKPLIWCGDLNVSHEEI 198 (335)
Q Consensus 167 ~~~~~~l~~~l~-~~~~~p~Il~GDFN~~~~~~ 198 (335)
..+++.+.++.. +....||+||||||..|.+.
T Consensus 168 ~aiV~~I~~~f~~~~~~~pw~I~GDFNr~P~sl 200 (271)
T PRK15251 168 GAIVRAVHNFFRPNMRHINWMIAGDFNRSPDRL 200 (271)
T ss_pred HHHHHHHHHHHhhccCCCCEEEeccCCCCCcch
Confidence 567778888876 45557999999999887763
No 10
>PTZ00297 pantothenate kinase; Provisional
Probab=99.79 E-value=1e-17 Score=178.73 Aligned_cols=256 Identities=14% Similarity=0.112 Sum_probs=130.6
Q ss_pred CCCccEEEEEecccchhh-hcCChhHHHHHHhhc-CCcEEEEeccccccC------CC-----------CCCCceEEE-e
Q 019834 38 KKDPLKFVTWNANSLLLR-VKNNWPEFSNFITTF-DPDVIALQILMRALS------SP-----------PFKNYQIWW-S 97 (335)
Q Consensus 38 ~~~~lrI~swNv~~~~~~-~~~~~~~l~~~i~~~-~~DIv~LQEv~~~~~------~~-----------~~~~y~~~~-~ 97 (335)
...+|||+|||++.+... ......++..+|+.+ ++|||||||+..... .. .-.+|.++. .
T Consensus 7 ~~~~l~VlTyNv~~~~~~~~~~~~~ri~~~i~~l~~~DIv~lQEvf~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 86 (1452)
T PTZ00297 7 GCAQARVLSYNFNILPRGCGGFQHERIETFLASVDAYDVVLLQEVYAASVLPYFLQKQLCFQKMLVDELKARGFHHYVIS 86 (1452)
T ss_pred CCCceEEEEEEccccCCCcccccHHHHHHHHHhccCCCEEEEecccccccccccccccchhhHHHHHHHHhcCCceeEee
Confidence 345899999999755311 111237788899885 789999999964210 00 012664333 2
Q ss_pred ccC---C-------CcceEEEEEeecCCCceEEeccccccccC-CCCCCE--EEEEe-------CcEEEEEEEcCCCCCC
Q 019834 98 LAD---S-------KYAGTALLVKKCFQPKKVSFSLEKTALKY-EPDGRV--ILAEF-------ETFYLLNTYAPNNGWK 157 (335)
Q Consensus 98 ~~~---~-------~~~Gvailsr~~l~~~~~~~~~~~~~~~~-~~~~r~--i~~~~-------~~~~i~~~y~~~~~~~ 157 (335)
... . ...|++|+||+||.... ...++...... ...+-+ ..++. ..++++++|+......
T Consensus 87 ~~~~~~~~~~~~~~~~~G~AILSR~PI~~~~-~~~l~~~~~~~~~~~RG~L~a~I~vp~~~g~~~~v~v~~tHL~~~~~~ 165 (1452)
T PTZ00297 87 KQPSYLTMLRYNVCSDNGLIIASRFPIWQRG-SYTFRNHERGEQSVRRGCLFAEVEVPLAEGGSQRIVFFNVHLRQEDSL 165 (1452)
T ss_pred cCccccccccCccccCCEEEEEECCChhhce-eeecCcccccccccccceEEEEEEccccCCCCceEEEEEeCCCCCCCc
Confidence 211 1 34699999999864322 23332100000 011112 23332 2699999999866532
Q ss_pred cchhhHHHHHHHHHHHHHHHHh-----------cCCCCEEEEccCCCCCCcccCcCchhhhhhhcCCCCCCCCCCCCCCC
Q 019834 158 EEENSFQRRRKWDKRIQEFVLQ-----------CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPG 226 (335)
Q Consensus 158 ~~~~~~~~r~~~~~~l~~~l~~-----------~~~~p~Il~GDFN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (335)
. .|.+++.++.+++.. ....|+||+||||....++ .+ ...
T Consensus 166 ~------~R~~Q~~ql~~~i~~~i~~~~~~~~~~~~~PvILaGDFN~~~~~~--~~---------------------~~~ 216 (1452)
T PTZ00297 166 P------STSSQVQETRRFVESVIANVYEQNNDGAEIPFVIAGDFNINGIDP--HN---------------------GGH 216 (1452)
T ss_pred c------hHHHHHHHHHHHHHHhhhhhcccccCCCCCCEEEEeeCCCccccc--cc---------------------cCC
Confidence 2 144555566666543 1456999999999742111 00 000
Q ss_pred CCHHHHHHHHHHhcc-CCeeEeeecccCCCC-CCceeeeeCCCC--CCcCCCcceeEEEEeChhhhcceeeeeeccCcc-
Q 019834 227 FTIAERKRFGAILKE-GRLIDAYRFLHKEKD-MDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGI- 301 (335)
Q Consensus 227 ~~~~~~~~~~~~~~~-~~l~D~~~~~~~~~~-~~~~~T~~~~~~--~~~~~~~~riD~i~~s~~~~~~~~~~~v~~~~~- 301 (335)
........+..+... .++.|++........ +-+..+|+.... ........||||||+++.+. +..+.+.....
T Consensus 217 ~s~e~~~ml~~l~~~~~~l~dv~~~~~~~~~~T~p~~~~fP~~~p~~~~~~~~~riD~Ifv~~~v~--v~~~~v~~~~~~ 294 (1452)
T PTZ00297 217 PTKRFQELLNELQDLGSGVREVIYDETGQHPPTRPPILFFPEQSKLERYSSTPQRQDYFFVTPCVQ--VEKPRIEKFVVS 294 (1452)
T ss_pred ccHHHHHHHHHhhhccccHhHHhHhhcCCCCCCCCccccccccCccccccCCCcceeEEEEeCCce--EEEEEEeccccc
Confidence 011111222222221 113333222211100 001223322110 01111236999999998764 55666632210
Q ss_pred -ccCCcCCCCccceEEEEecCCCch
Q 019834 302 -ELEGFYGSDHCPVSLELSEASSDS 325 (335)
Q Consensus 302 -~~~~~~~SDH~pV~~~~~~~~~~~ 325 (335)
...+.++|||+||.++|.++..++
T Consensus 295 ~~~~~~~~SDH~Pv~a~l~l~~~~~ 319 (1452)
T PTZ00297 295 SRRPYTYLSDHFGVSARLTLPLNPS 319 (1452)
T ss_pred CCCCCCCcCcCccEEEEEEeCCChh
Confidence 124568999999999999954443
No 11
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional
Probab=99.78 E-value=6e-18 Score=165.36 Aligned_cols=157 Identities=17% Similarity=0.203 Sum_probs=90.8
Q ss_pred CCCCccEEEEEecccch--------------hhhcCChhHHHHHHhhcCCcEEEEeccccc----cCCCCC--CCceEEE
Q 019834 37 SKKDPLKFVTWNANSLL--------------LRVKNNWPEFSNFITTFDPDVIALQILMRA----LSSPPF--KNYQIWW 96 (335)
Q Consensus 37 ~~~~~lrI~swNv~~~~--------------~~~~~~~~~l~~~i~~~~~DIv~LQEv~~~----~~~~~~--~~y~~~~ 96 (335)
+....+||+||||..-. .....|...|++.|...+||||||||+... +-...+ .||..++
T Consensus 250 ~~~~~frVmSYNILAd~ya~~dly~ycp~~aL~W~yRk~lIl~EI~~~~aDIICLQEV~~~~~~d~~~p~L~~~GY~Gv~ 329 (606)
T PLN03144 250 SSAGTFTVLSYNILSDLYATSDMYSYCPPWALSWTYRRQNLLREIVGYRADILCLQEVQSDHFEEFFAPELDKHGYQALY 329 (606)
T ss_pred CCCCCEEEEEeeeccccccCcccccCCCccccCHHHHHHHHHHHHHhcCCCEEEEeecCHHHHHHHHHhhhhhcCceEEE
Confidence 45679999999995210 112223478999999999999999999532 111122 4787666
Q ss_pred eccCC--------CcceEEEEEeec-CCCceE-Eec-----ccccccc------CCCCCC--------EEEEEeC-----
Q 019834 97 SLADS--------KYAGTALLVKKC-FQPKKV-SFS-----LEKTALK------YEPDGR--------VILAEFE----- 142 (335)
Q Consensus 97 ~~~~~--------~~~Gvailsr~~-l~~~~~-~~~-----~~~~~~~------~~~~~r--------~i~~~~~----- 142 (335)
..... ...|+|||+|.+ +..+.. .+. +...... .....| ++.++..
T Consensus 330 ~~Kt~~~~~~~~~~~DGcAIFyr~drFeLv~~~~ief~~~~lslt~~~~~s~~~~~~l~Rl~kdNVAliv~Le~k~~~~~ 409 (606)
T PLN03144 330 KKKTTEVYTGNTYVIDGCATFFRRDRFSLVKKYEVEFNKAAQSLTEALIPSAQKKAALNRLLKDNVALIVVLEAKFGNQG 409 (606)
T ss_pred eCCCCccccccccCCceeEEEEECcceEEEEeeeeeccchhhccCccccccccchhhhhhhccCcEEEEEEEEEeccccc
Confidence 53211 256999999987 222211 111 1000000 001112 1222221
Q ss_pred --------cEEEEEEEcCCCCCCcchhhHHHHHHHHHHHHHHHHhc---CCCCEEEEccCCCCCCcc
Q 019834 143 --------TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC---SGKPLIWCGDLNVSHEEI 198 (335)
Q Consensus 143 --------~~~i~~~y~~~~~~~~~~~~~~~r~~~~~~l~~~l~~~---~~~p~Il~GDFN~~~~~~ 198 (335)
.|.|+|+|+....... . .|..++..|.+.++.. .+.|+|||||||+.|.+.
T Consensus 410 ~~~~~~~~~l~VaNTHL~~~p~~~---d--vRl~Q~~~Ll~~l~~~~~~~~~PvIlcGDFNS~P~S~ 471 (606)
T PLN03144 410 ADNGGKRQLLCVANTHIHANQELK---D--VKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSA 471 (606)
T ss_pred ccCCCCccEEEEEEeeeccCCccc---h--hHHHHHHHHHHHHHHHhhcCCCceEEeccCCCCCCCh
Confidence 3889999995544221 1 2455556666665542 468999999999998763
No 12
>KOG2756 consensus Predicted Mg2+-dependent phosphodiesterase TTRAP [Signal transduction mechanisms]
Probab=99.76 E-value=5.4e-18 Score=145.83 Aligned_cols=239 Identities=19% Similarity=0.326 Sum_probs=134.3
Q ss_pred CCCCCccEEEEEecccchhh-hcCChhHHHHHHhhcCCcEEEEeccccccCCC--CCC-CceEEEeccCCCcceEEEEEe
Q 019834 36 NSKKDPLKFVTWNANSLLLR-VKNNWPEFSNFITTFDPDVIALQILMRALSSP--PFK-NYQIWWSLADSKYAGTALLVK 111 (335)
Q Consensus 36 ~~~~~~lrI~swNv~~~~~~-~~~~~~~l~~~i~~~~~DIv~LQEv~~~~~~~--~~~-~y~~~~~~~~~~~~Gvailsr 111 (335)
......+.+++||+.|+.-+ ...|..++..+|+-+.|||||||||....... .+. .|.+++. ....+.|.+++.+
T Consensus 94 d~~g~~~S~~~WnidgLdln~l~~RMrAv~H~i~l~sPdiiflQEV~p~~y~~~~K~~s~y~i~~~-~~~~~~~~~~l~~ 172 (349)
T KOG2756|consen 94 DTQGSMFSLITWNIDGLDLNNLSERMRAVCHYLALYSPDVIFLQEVIPPYYSYLKKRSSNYEIITG-HEEGYFTAIMLKK 172 (349)
T ss_pred hhcccEEEEEEeeccccccchHHHHHHHHHHHHHhcCCCEEEEeecCchhhHHHHHhhhheeEEEe-ccceeeeeeeeeh
Confidence 33456789999999887533 11223689999999999999999996332211 122 3444443 3344555555443
Q ss_pred ecCCCceE-EeccccccccCCCCC--CEEEEEe--CcEEEEEEEcCCCCCCcchhhHHHHHHHHHHHHHHHHhcCCCCEE
Q 019834 112 KCFQPKKV-SFSLEKTALKYEPDG--RVILAEF--ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLI 186 (335)
Q Consensus 112 ~~l~~~~~-~~~~~~~~~~~~~~~--r~i~~~~--~~~~i~~~y~~~~~~~~~~~~~~~r~~~~~~l~~~l~~~~~~p~I 186 (335)
..+..... ...++ ...+.+ .++.+.+ ..+.+++.|+.+...... ++.++-..-++.+.+.|+..++..||
T Consensus 173 s~~~Vks~~~i~F~----NS~M~R~L~I~Ev~v~G~Kl~l~tsHLEStr~h~P-~r~~qF~~~~~k~~EaIe~lPnA~Vi 247 (349)
T KOG2756|consen 173 SRVKVKSQEIIPFP----NSKMMRNLLIVEVNVSGNKLCLMTSHLESTRGHAP-ERMNQFKMVLKKMQEAIESLPNATVI 247 (349)
T ss_pred hhcCccccceeccC----cchhhheeEEEEEeecCceEEEEeccccCCCCCCh-HHHHHHHHHHHHHHHHHHhCCCceEE
Confidence 32211111 11111 111122 2333333 368999999988775432 22222223345556666667889999
Q ss_pred EEccCCCCCCcccCcCchhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHHHhccCCeeEeeecccCCCCCCceeeeeCC
Q 019834 187 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 266 (335)
Q Consensus 187 l~GDFN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~T~~~~ 266 (335)
++||.|.......... +-++ ++|+|..+..+.. ..|||...
T Consensus 248 FGGD~NlrD~ev~r~~------------------------------------lPD~-~vDvWE~lg~p~~--~~FTwDT~ 288 (349)
T KOG2756|consen 248 FGGDTNLRDREVTRCG------------------------------------LPDN-IVDVWEFLGKPKH--CQFTWDTQ 288 (349)
T ss_pred EcCcccchhhhcccCC------------------------------------CCch-HHHHHHHhCCCCc--Cceeeecc
Confidence 9999997543322111 1123 7899998884333 68999865
Q ss_pred CCCCcCC---CcceeEEEEeChhhh-c--ceeeeeeccCc-cccCCcCCCCccceEEEEe
Q 019834 267 PIGKYRG---KRMRIDYFIVSEELK-D--RIIACEMQGHG-IELEGFYGSDHCPVSLELS 319 (335)
Q Consensus 267 ~~~~~~~---~~~riD~i~~s~~~~-~--~~~~~~v~~~~-~~~~~~~~SDH~pV~~~~~ 319 (335)
.+...++ ...|+|+||...... . ........... .-....++|||++|.++|.
T Consensus 289 ~N~nl~G~~a~k~RfDRi~~r~~~~~G~~~~~~l~l~g~~kiRgc~~fPSDHwgll~Tl~ 348 (349)
T KOG2756|consen 289 MNSNLGGTAACKLRFDRIFFRAAAEEGHIIPRSLDLLGLEKLRGCGRFPSDHWGLLCTLD 348 (349)
T ss_pred cCcccchhHHHHHHHHHHhhhhhhhcCCcCccccchhhhhhhccCCCCCcccceeeeecc
Confidence 4433322 247999999843321 0 11222222110 0113468899999999986
No 13
>KOG1294 consensus Apurinic/apyrimidinic endonuclease and related enzymes [Replication, recombination and repair]
Probab=99.74 E-value=5.9e-17 Score=147.81 Aligned_cols=262 Identities=34% Similarity=0.502 Sum_probs=192.5
Q ss_pred CCCCccEEEEEecccchhhhcCChhHHHHHHhhcCCcEEEEeccccccCC-----CCCCCc-eEEEeccCC--CcceEEE
Q 019834 37 SKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSS-----PPFKNY-QIWWSLADS--KYAGTAL 108 (335)
Q Consensus 37 ~~~~~lrI~swNv~~~~~~~~~~~~~l~~~i~~~~~DIv~LQEv~~~~~~-----~~~~~y-~~~~~~~~~--~~~Gvai 108 (335)
.+.-.+.|+.||+.+++...+. .-..++.....|++|+||++..+.. ...++| +.++..... ++.|+..
T Consensus 59 g~~~~~~i~~~~i~~~~~~~~~---~~~~~~~~~l~d~~~~~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~ 135 (335)
T KOG1294|consen 59 GNRKVLNICPWDIAGLEACEKF---SGDPEISSELRDLQCLLETKCTIDSGPCSHPTEKGYTHSLLSCASKKDGYSGEID 135 (335)
T ss_pred CCeeEeecCchhhhhhhhhhcc---ccchhccccchhhhhhhhccceeccCcceecccCCcccceeecccccCCccceee
Confidence 3445668999999998876653 2445677788999999999754322 124688 666665543 4778888
Q ss_pred EEeecCCCceEEeccccccccCCCCCCEEEEEeCcEEEEEEEcCCCCCCcchhhHHHHHHHHHHHHHHHHhc-----CCC
Q 019834 109 LVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-----SGK 183 (335)
Q Consensus 109 lsr~~l~~~~~~~~~~~~~~~~~~~~r~i~~~~~~~~i~~~y~~~~~~~~~~~~~~~r~~~~~~l~~~l~~~-----~~~ 183 (335)
+++.. +..+.+.+..-.......++++.++.....+++.|.|+...+.....+.-+.+|...+...+.+. ...
T Consensus 136 ~~~~~--p~~v~~~~~~~~s~h~~~g~~i~~e~e~~~l~~~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~ 213 (335)
T KOG1294|consen 136 YSKFK--PLKVHYGFGAMGSDHRPVGRVIIAEFEIFILINTYVPNIGGGLVNLVYRILDRWDKEIEEKRKKQSSSKNLKA 213 (335)
T ss_pred eeecc--cceeeecccccCCccCccceEEEEeecceeeccccCcccccccchhhhhhhhhhHHHHHHHhhhccccccccC
Confidence 88874 77777766521233456789999999999999999999987654333332366777777777653 224
Q ss_pred CEEEEccCCCCCCcccCcCchhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHH-HHHhccCCeeEeeecccCCCCCCceee
Q 019834 184 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRF-GAILKEGRLIDAYRFLHKEKDMDCGFS 262 (335)
Q Consensus 184 p~Il~GDFN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~~~~~~~~~~~~~~T 262 (335)
+++++||.|..|...+... ++..+.......+++++.++.++ ..++..+.++|+++.++++.. ..||
T Consensus 214 ~~v~~gd~nvs~~~i~~~~----------~~~~~~~~~~~~~~~t~e~R~~~~~~~~~~~~~iDt~r~~~~~~~--~~~t 281 (335)
T KOG1294|consen 214 PVVICGDLNVSHEEIDPSK----------PLVSPAGNTLSNAGFTPEERDSFFAELLEKGPLIDTYRELHKDQK--KAYT 281 (335)
T ss_pred cceeccccccchhhccccc----------cccccccCCcCCCCCCHHHhhhHHHhhccCCcceeehhhhcCCcc--cccc
Confidence 7999999999988776321 11222334457889999999999 688888889999999998875 4677
Q ss_pred eeCC-CCCCcCCCcceeEEEEeChhhhcceeeeeeccCccccCCcCCCCccceEEEEec
Q 019834 263 WSGN-PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 320 (335)
Q Consensus 263 ~~~~-~~~~~~~~~~riD~i~~s~~~~~~~~~~~v~~~~~~~~~~~~SDH~pV~~~~~~ 320 (335)
+|.+ .++..++.+.|+||+.+++.......++.+..++ ...|||+||.+.|.+
T Consensus 282 ~Wk~~~~~r~~~~~~r~dy~~Vsk~~~n~~r~~~Ic~r~-----~~gsdh~pi~~~~~~ 335 (335)
T KOG1294|consen 282 FWKYMPNGRQRGHGERCDYILVSKPGPNNGRRFYICSRP-----IHGSDHCPITLEFFL 335 (335)
T ss_pred chhhccccccCCCCCceeEEEecCcCCCCCceeeeecCc-----cCCCCCCCeeeeecC
Confidence 7765 4455567789999999999999999999999753 477999999998864
No 14
>KOG3873 consensus Sphingomyelinase family protein [Signal transduction mechanisms]
Probab=99.74 E-value=6.2e-18 Score=151.09 Aligned_cols=256 Identities=18% Similarity=0.168 Sum_probs=143.7
Q ss_pred CCCCCccEEEEEecccchhhhcCC---hhHHHHHHhhcCCcEEEEecccc-----ccCCCCCC--CceEEEeccCCCcce
Q 019834 36 NSKKDPLKFVTWNANSLLLRVKNN---WPEFSNFITTFDPDVIALQILMR-----ALSSPPFK--NYQIWWSLADSKYAG 105 (335)
Q Consensus 36 ~~~~~~lrI~swNv~~~~~~~~~~---~~~l~~~i~~~~~DIv~LQEv~~-----~~~~~~~~--~y~~~~~~~~~~~~G 105 (335)
++.+-+|||++.|++|+.-..+.+ ...+-+.+....+||+.|||+-. .+.+..-+ -|.-+|+++-. ..|
T Consensus 3 n~~a~~lriltlN~Wgip~~Sk~R~~Rm~~~g~~l~~E~yDiv~LQEvWs~eD~~~L~~~~ss~yPysh~FHSGim-GaG 81 (422)
T KOG3873|consen 3 NMLALELRILTLNIWGIPYVSKDRRHRMDAIGDELASEKYDIVSLQEVWSQEDFEYLQSGCSSVYPYSHYFHSGIM-GAG 81 (422)
T ss_pred cchhheeeeeEeeccccccccchhHHHHHHHhHHHhhcccchhhHHHHHHHHHHHHHHHhccccCchHHhhhcccc-cCc
Confidence 456778999999999986444333 34566788888999999999931 12211111 23333332222 679
Q ss_pred EEEEEeecCCCceE-Eecccccccc------CCCCC-CE--EEEEeCcEEEEEEEcCCCCCCcchhhHHHHHHHHHHHHH
Q 019834 106 TALLVKKCFQPKKV-SFSLEKTALK------YEPDG-RV--ILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQE 175 (335)
Q Consensus 106 vailsr~~l~~~~~-~~~~~~~~~~------~~~~~-r~--i~~~~~~~~i~~~y~~~~~~~~~~~~~~~r~~~~~~l~~ 175 (335)
+++|||+||..... .+.+..-+.. ...++ .+ +.+....+.++++|+..........-...|..|.=.+.+
T Consensus 82 L~vfSK~PI~~t~~~~y~lNG~p~~i~rGDWf~GK~Vgl~~l~~~g~~v~~yntHLHAeY~rq~D~YL~HR~~QAwdlaq 161 (422)
T KOG3873|consen 82 LCVFSKHPILETLFHRYSLNGYPHAIHRGDWFGGKGVGLTVLLVGGRMVNLYNTHLHAEYDRQNDEYLCHRVAQAWDLAQ 161 (422)
T ss_pred eEEeecCchhhhhhhccccCCccceeeeccccccceeEEEEEeeCCEEeeeeehhccccccccCchhhhHHHHHHHHHHH
Confidence 99999998543221 2333210000 00111 01 222223566777776444332222345567777778888
Q ss_pred HHHhc--CCCCEEEEccCCCCCCcccCcCchhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHHHhccCCeeEeeecccC
Q 019834 176 FVLQC--SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHK 253 (335)
Q Consensus 176 ~l~~~--~~~p~Il~GDFN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 253 (335)
+|+.. .+.-+|++||||+.|.+....- +-..+|+|+|+.+++
T Consensus 162 fi~~t~q~~~vVI~~GDLN~~P~dl~~~l------------------------------------l~~a~l~daw~~~h~ 205 (422)
T KOG3873|consen 162 FIRATRQNADVVILAGDLNMQPQDLGHKL------------------------------------LLSAGLVDAWTSLHL 205 (422)
T ss_pred HHHHHhcCCcEEEEecCCCCCccccceee------------------------------------eeccchhhhHhhhch
Confidence 88873 5678999999999988753221 112335555554444
Q ss_pred CCCCC-------------------ceeeeeCCCCCCcCCCcceeEEEEeChhhh-cceeeeeeccCccccCCcCCCCccc
Q 019834 254 EKDMD-------------------CGFSWSGNPIGKYRGKRMRIDYFIVSEELK-DRIIACEMQGHGIELEGFYGSDHCP 313 (335)
Q Consensus 254 ~~~~~-------------------~~~T~~~~~~~~~~~~~~riD~i~~s~~~~-~~~~~~~v~~~~~~~~~~~~SDH~p 313 (335)
....+ ..-||.+.........+.||||+|++++.. .++..+...-.-.+......|||.+
T Consensus 206 ~q~e~~~~r~s~~~~l~~g~tcd~~~N~y~~aqk~~ddp~~~RiDYvl~k~~~~~~~~a~~~~t~~rvP~~d~s~SDH~A 285 (422)
T KOG3873|consen 206 DQCESDSFRLSEDKELVEGNTCDSPLNCYTSAQKREDDPLGKRIDYVLVKPGDCNAKIAEVEFTEPRVPGEDCSYSDHEA 285 (422)
T ss_pred hhhcCcccccchhhhhhcCCcccCcchhhhHHHhCCCCccceeeeEEEEcCcceEEEeeeEEecCCCCCCCCCCccchhh
Confidence 32110 112232210001112378999999988654 3444444443222333456799999
Q ss_pred eEEEEecCCCchHHH
Q 019834 314 VSLELSEASSDSEKR 328 (335)
Q Consensus 314 V~~~~~~~~~~~~~~ 328 (335)
++++|.+-..+.+.+
T Consensus 286 l~a~L~I~~~~~~~~ 300 (422)
T KOG3873|consen 286 LMATLKIFKQPPRSE 300 (422)
T ss_pred heeEEEeecCCCCCC
Confidence 999999776655443
No 15
>PF03372 Exo_endo_phos: Endonuclease/Exonuclease/phosphatase family Subset of Pfam family Subset of Pfam family; InterPro: IPR005135 This domain is found in a large number of proteins including magnesium dependent endonucleases and phosphatases involved in intracellular signalling []. Proteins this domain is found in include: AP endonuclease proteins (4.2.99.18 from EC), DNase I proteins (3.1.21.1 from EC), Synaptojanin an inositol-1,4,5-trisphosphate phosphatase (3.1.3.56 from EC) and Sphingomyelinase (3.1.4.12 from EC).; PDB: 2J63_A 2JC4_A 3TEB_B 3MTC_A 3N9V_B 1ZWX_A 2F1N_A 1Y21_A 1NTF_A 2IMQ_X ....
Probab=99.70 E-value=5e-17 Score=143.10 Aligned_cols=148 Identities=20% Similarity=0.226 Sum_probs=74.4
Q ss_pred EEEecccchhhh--cCChhHHHHHHhhcCCcEEEEecccccc-----CCC--CCCCceEEEeccCC-----CcceEEEEE
Q 019834 45 VTWNANSLLLRV--KNNWPEFSNFITTFDPDVIALQILMRAL-----SSP--PFKNYQIWWSLADS-----KYAGTALLV 110 (335)
Q Consensus 45 ~swNv~~~~~~~--~~~~~~l~~~i~~~~~DIv~LQEv~~~~-----~~~--~~~~y~~~~~~~~~-----~~~Gvails 110 (335)
+||||++...+. ..+...|.++|..++||||||||+.... ... ...++......... ...|++|++
T Consensus 1 ~T~Nv~~~~~~~~~~~~~~~i~~~i~~~~~Dii~LQEv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~ 80 (249)
T PF03372_consen 1 MTWNVRGWNYRSDNDRKRREIAQWIAELDPDIIALQEVRNDDLSELLEEQLRGYLGYYGSFWPGNSPPSDAGGYGVAILS 80 (249)
T ss_dssp EEEEESTHHHHHHHHHHHHHHHHHHHHHT-SEEEEEEEESHHHHHHHHHHHHTCTTHEEEEEETSSSTTCSSSEEEEEEE
T ss_pred CeEEeCcCcccccchhHHHHHHHHHHhcCCCEEEEecchhhhhhhhhhhhcccccccccceeccccccccccCceEEEEE
Confidence 799998843322 1112469999999999999999997321 100 11122222222222 246999999
Q ss_pred eecCCCceEEeccccccccCCCCC-CEE--------EEEeCcEEEEEEEcCCCCCCcchhhHHHHHHHHHHHHHHHHhcC
Q 019834 111 KKCFQPKKVSFSLEKTALKYEPDG-RVI--------LAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS 181 (335)
Q Consensus 111 r~~l~~~~~~~~~~~~~~~~~~~~-r~i--------~~~~~~~~i~~~y~~~~~~~~~~~~~~~r~~~~~~l~~~l~~~~ 181 (335)
|.++..... .............. ... ......+.|+++|+++... .+.....+++..+........
T Consensus 81 r~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~H~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 155 (249)
T PF03372_consen 81 RSPIFSSVS-YVFSLFSKPGIRIFRRSSKSKGIVPVSINGKPITVVNVHLPSSND----ERQEQWRELLARIQKIYADNP 155 (249)
T ss_dssp SSCCCEEEE-EEEEEESSSTTCEEEEEEEEEEEEEEEEETEEEEEEEEETTSHHH----HHHHHHHHHHHHHHHHHHTSS
T ss_pred ccccccccc-cccccccccccccccccccccccccccccceEEEeeeccccccch----hhhhhhhhhhhhhhhcccccc
Confidence 997432211 11110000000000 000 1113478899999888431 111112233444433333233
Q ss_pred CCCEEEEccCCCCCCc
Q 019834 182 GKPLIWCGDLNVSHEE 197 (335)
Q Consensus 182 ~~p~Il~GDFN~~~~~ 197 (335)
..|+|||||||..+..
T Consensus 156 ~~~~iv~GDfN~~~~~ 171 (249)
T PF03372_consen 156 NEPVIVMGDFNSRPDS 171 (249)
T ss_dssp CCEEEEEEE-SS-BSS
T ss_pred cceEEEEeecccCCcc
Confidence 3479999999997765
No 16
>smart00476 DNaseIc deoxyribonuclease I. Deoxyribonuclease I catalyzes the endonucleolytic cleavage of double-stranded DNA. The enzyme is secreted outside the cell and also involved in apoptosis in the nucleus.
Probab=99.60 E-value=5.3e-14 Score=126.33 Aligned_cols=150 Identities=11% Similarity=0.072 Sum_probs=80.8
Q ss_pred CCccEEEEEecccchhhhcC---ChhHHHHHHhhcCCcEEEEeccccc-----------cCCCCCCCceEEEeccC--CC
Q 019834 39 KDPLKFVTWNANSLLLRVKN---NWPEFSNFITTFDPDVIALQILMRA-----------LSSPPFKNYQIWWSLAD--SK 102 (335)
Q Consensus 39 ~~~lrI~swNv~~~~~~~~~---~~~~l~~~i~~~~~DIv~LQEv~~~-----------~~~~~~~~y~~~~~~~~--~~ 102 (335)
+..|+|+||||+.+...... +.+.|+++|+ .+|||++||+... +......+|.++.+... .+
T Consensus 15 ~~~l~I~SfNIr~fgd~k~~~~~r~~~i~~il~--~~DIiglQEV~d~q~~~l~~ll~~Ln~~~~~~Y~~v~s~r~gr~~ 92 (276)
T smart00476 15 AASLRICAFNIQSFGDSKMSNATLMSIIVKILS--RYDIALVQEVRDSDLSAVPKLMDQLNSDSPNTYSYVSSEPLGRNS 92 (276)
T ss_pred CCcEEEEEEECcccCCccccHHHHHHHHHHHhc--cCCEEEEEEeecchhHHHHHHHHHHhhcCCCCceEEecCCCCCCC
Confidence 35799999999866532211 2245666666 8999999999632 11111137877765321 11
Q ss_pred -cceEEEEEeecCCCceEEecccccc----ccCCCCCCEEEEEe-----CcEEEEEEEcCCCCCCcchhhHHHHHHHHHH
Q 019834 103 -YAGTALLVKKCFQPKKVSFSLEKTA----LKYEPDGRVILAEF-----ETFYLLNTYAPNNGWKEEENSFQRRRKWDKR 172 (335)
Q Consensus 103 -~~Gvailsr~~l~~~~~~~~~~~~~----~~~~~~~r~i~~~~-----~~~~i~~~y~~~~~~~~~~~~~~~r~~~~~~ 172 (335)
....++++|.+-......+.++... .......-++.+.. ..+.++++|+.+... ..+.....+-
T Consensus 93 ~~E~~a~~Yr~drv~v~~~~~f~d~~~~~~~~F~ReP~~~~F~~~~~~~~~F~li~~H~~p~~~------~~e~~aL~~v 166 (276)
T smart00476 93 YKEQYLFLYRSDLVSVLDSYLYDDGCECGNDVFSREPFVVKFSSPSTAVKEFVIVPLHTTPEAA------VAEIDALYDV 166 (276)
T ss_pred CCEEEEEEEecceEEEcccceecCCCCCccccccccceEEEEEeCCCCCccEEEEEecCChHHH------HHHHHHHHHH
Confidence 3458899988621110111121100 01111222333332 269999999977541 1111122222
Q ss_pred HHHHHHhcCCCCEEEEccCCCCCC
Q 019834 173 IQEFVLQCSGKPLIWCGDLNVSHE 196 (335)
Q Consensus 173 l~~~l~~~~~~p~Il~GDFN~~~~ 196 (335)
+.+.+++....++||+||||+..+
T Consensus 167 ~~~~~~~~~~~~villGDFNa~~~ 190 (276)
T smart00476 167 YLDVRQKWGTEDVIFMGDFNAGCS 190 (276)
T ss_pred HHHHHHhhccCCEEEEccCCCCCC
Confidence 334443346789999999998554
No 17
>KOG2338 consensus Transcriptional effector CCR4-related protein [Transcription]
Probab=99.46 E-value=1.5e-12 Score=121.88 Aligned_cols=152 Identities=20% Similarity=0.194 Sum_probs=90.5
Q ss_pred CccEEEEEecccch----------------hhhcCChhHHHHHHhhcCCcEEEEeccccccCC------CCCCCceEEEe
Q 019834 40 DPLKFVTWNANSLL----------------LRVKNNWPEFSNFITTFDPDVIALQILMRALSS------PPFKNYQIWWS 97 (335)
Q Consensus 40 ~~lrI~swNv~~~~----------------~~~~~~~~~l~~~i~~~~~DIv~LQEv~~~~~~------~~~~~y~~~~~ 97 (335)
-.++|+||||-... -....|...|+..|+..+|||+|||||...... ....||..++.
T Consensus 115 f~ftvmSYNILAQ~l~~~~~r~~~~~s~~~L~W~~R~~~Ll~EL~~~dpDIlCLQEVq~d~~~~~~~~~~~~lGy~~~~~ 194 (495)
T KOG2338|consen 115 FDFTVMSYNILAQDLLRDIRRLYFPESGPALKWLRRSQNLLNELKHYDPDVLCLQEVQEDHYPEFWQPLLGKLGYTGFFK 194 (495)
T ss_pred cceEEEEehHhHHHHHHHhHHhhccCChhhcchhHHhHHHHHHHhhcCCCeeeehhhhhhhhHHHHHHHHhhcCceEEEE
Confidence 38999999993210 011123467999999999999999999632111 12258877665
Q ss_pred ccC-CCcceEEEEEeecCCCceEE------ecccc-ccccCCCCCCEEEEEe-------CcEEEEEEEcCCCCCCcchhh
Q 019834 98 LAD-SKYAGTALLVKKCFQPKKVS------FSLEK-TALKYEPDGRVILAEF-------ETFYLLNTYAPNNGWKEEENS 162 (335)
Q Consensus 98 ~~~-~~~~Gvailsr~~l~~~~~~------~~~~~-~~~~~~~~~r~i~~~~-------~~~~i~~~y~~~~~~~~~~~~ 162 (335)
... .+-.||+|+++.. .+.+. +.... .....+..+.++.+.+ ..+.|+|+|+-....+..
T Consensus 195 r~t~~KthG~ai~w~~~--~F~lv~~~~l~y~~~~~~l~n~~NV~lvv~l~f~~~~~~sq~ilVanTHLl~np~~~~--- 269 (495)
T KOG2338|consen 195 RRTGTKTHGVAILWHSA--KFKLVNHSELNYFDSGSALANRDNVGLVVSLEFRLVDESSQGILVANTHLLFNPSRSD--- 269 (495)
T ss_pred eccCCCCceEEEEEecc--cceecccchhhcccccchhhcccceeEEEEEEecccCcccCceEEEeeeeeecCcccc---
Confidence 444 4467999999875 12111 11110 0001111233444444 269999999855542211
Q ss_pred HHHHHHHHHHHHHHHHhc-----CCCCEEEEccCCCCCCcc
Q 019834 163 FQRRRKWDKRIQEFVLQC-----SGKPLIWCGDLNVSHEEI 198 (335)
Q Consensus 163 ~~~r~~~~~~l~~~l~~~-----~~~p~Il~GDFN~~~~~~ 198 (335)
.|..+...|.+.+.+. ...|+++|||||+.+.+.
T Consensus 270 --vrL~Q~~iiL~~~~~~~~~~~~~~pi~l~GDfNt~p~~~ 308 (495)
T KOG2338|consen 270 --VRLAQVYIILAELEKMSKSSKSHWPIFLCGDFNTEPDSP 308 (495)
T ss_pred --hhhHHHHHHHHHHHHHHhhcccCCCeEEecCCCCCCCCC
Confidence 2555555565555542 356999999999988763
No 18
>COG3021 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.43 E-value=5.5e-13 Score=119.08 Aligned_cols=145 Identities=13% Similarity=0.056 Sum_probs=84.8
Q ss_pred CCCccEEEEEecccchhhhcCChhHHHHHHhhcCCcEEEEeccccccCCCC---CCCceEEEeccC-CCcceEEEEEeec
Q 019834 38 KKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPP---FKNYQIWWSLAD-SKYAGTALLVKKC 113 (335)
Q Consensus 38 ~~~~lrI~swNv~~~~~~~~~~~~~l~~~i~~~~~DIv~LQEv~~~~~~~~---~~~y~~~~~~~~-~~~~Gvailsr~~ 113 (335)
....+++++.|+..-+... ..+...+...++|+|.+||+..-..... ...|.++..+.. .+..+++++++..
T Consensus 85 ~~~~~~~l~~N~r~~n~~~----~k~Lsl~~~~~~D~v~~~E~~~~~~~~~~~l~~~yP~~~~~~~~~~~~~~a~~sr~~ 160 (309)
T COG3021 85 DQRLLWNLQKNVRFDNASV----AKLLSLIQQLDADAVTTPEGVQLWTAKVGALAAQYPAFILCQHPTGVFTLAILSRRP 160 (309)
T ss_pred cchhhhhhhhhccccCcCH----HHHHHHHhhhCcchhhhHHHHHHhHhHHHHHHHhCCceeecCCCCCeeeeeeccccc
Confidence 4557788888875433333 4577788888899999999853221111 124443333332 3567888888874
Q ss_pred CCCceEEeccccccccCCCCCCEEEEEe----CcEEEEEEEcCCCCCCcchhhHHHHHHHHHHHHHHHHhcCCCCEEEEc
Q 019834 114 FQPKKVSFSLEKTALKYEPDGRVILAEF----ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCG 189 (335)
Q Consensus 114 l~~~~~~~~~~~~~~~~~~~~r~i~~~~----~~~~i~~~y~~~~~~~~~~~~~~~r~~~~~~l~~~l~~~~~~p~Il~G 189 (335)
++......+ + .....++++..-. ..+.++++|..+.....+ .+| .++..+.+.+.. ..+|+|++|
T Consensus 161 --~~~~~~~e~--~-~~~pk~~~~t~~~~~~g~~l~v~~lh~~~~~~~~~----~~~-~ql~~l~~~i~~-~~gpvIlaG 229 (309)
T COG3021 161 --CCPLTEAEP--W-LRLPKSALATAYPLPDGTELTVVALHAVNFPVGTD----PQR-AQLLELGDQIAG-HSGPVILAG 229 (309)
T ss_pred --cccccccCc--c-ccCCccceeEEEEcCCCCEEEEEeeccccccCCcc----HHH-HHHHHHHHHHHc-CCCCeEEee
Confidence 111111111 1 1223444443332 478999999875443221 223 666677777644 348999999
Q ss_pred cCCCCCCc
Q 019834 190 DLNVSHEE 197 (335)
Q Consensus 190 DFN~~~~~ 197 (335)
|||+.|.+
T Consensus 230 DfNa~pWS 237 (309)
T COG3021 230 DFNAPPWS 237 (309)
T ss_pred cCCCcchh
Confidence 99997765
No 19
>PF14529 Exo_endo_phos_2: Endonuclease-reverse transcriptase ; PDB: 2EI9_A 1WDU_B.
Probab=99.36 E-value=5.3e-12 Score=99.52 Aligned_cols=119 Identities=23% Similarity=0.375 Sum_probs=66.1
Q ss_pred EEEEEEEcCCCCCCcchhhHHHHHHHHHHHHHHHHhcCCCCEEEEccCCCCCCcccCcCchhhhhhhcCCCCCCCCCCCC
Q 019834 144 FYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWG 223 (335)
Q Consensus 144 ~~i~~~y~~~~~~~~~~~~~~~r~~~~~~l~~~l~~~~~~p~Il~GDFN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (335)
+.|+++|.|+... +..+.+.|.+++......++||+||||..+..++....
T Consensus 1 i~i~~vY~pp~~~---------~~~~~~~l~~~~~~~~~~~~Ii~GDFN~~~~~w~~~~~-------------------- 51 (119)
T PF14529_consen 1 ITIISVYAPPSSE---------REEFFDQLRQLLKNLPPAPIIIGGDFNAHHPNWDSSNT-------------------- 51 (119)
T ss_dssp EEEEEEE--TTS----------CHHHHHHHHHHHHCCTTSSEEEEEE-----GGGT-SCH--------------------
T ss_pred CEEEEEECCCCcc---------HHHHHHHHHHHHHhCCCCCEEEEeECCCCchhhhhccc--------------------
Confidence 5799999998871 44567778888876555599999999997666443221
Q ss_pred CCCCCHHHHHHHHHHhccCCeeEeeecccCCCCCCceeeeeCCCCCCcCCCcceeEEEEeChhhhcceeeeeeccCcccc
Q 019834 224 QPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 303 (335)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~riD~i~~s~~~~~~~~~~~v~~~~~~~ 303 (335)
.....+.+..++...+|.+... +. ..+||..... ..+||++|++..+.... ......
T Consensus 52 ----~~~~~~~l~~~~~~~~l~~~~~---~~----~~~T~~~~~~------~s~iD~~~~s~~~~~~~-~~~~~~----- 108 (119)
T PF14529_consen 52 ----NSRRGEQLLDWLDSHNLVDLNP---PG----RPPTFISNSH------GSRIDLILTSDNLLSWC-VWVISS----- 108 (119)
T ss_dssp ----HHHHHHHHHHHHHHCTEEE------TT-------SEEECCC------EE--EEEEEECCGCCCE-EEEEET-----
T ss_pred ----cchhHHHHHHHhhhceeeeeec---CC----CCCcccCCCC------CceEEEEEECChHHhcC-cEEEeC-----
Confidence 0035566777777776877622 11 2478765432 47999999999987652 222221
Q ss_pred CCcCCCCccceE
Q 019834 304 EGFYGSDHCPVS 315 (335)
Q Consensus 304 ~~~~~SDH~pV~ 315 (335)
....|||+||.
T Consensus 109 -~~~~SDH~~I~ 119 (119)
T PF14529_consen 109 -DDSGSDHCPIT 119 (119)
T ss_dssp -TSSSSSB--EE
T ss_pred -CCCCCCccCCC
Confidence 24679999985
No 20
>COG5239 CCR4 mRNA deadenylase, exonuclease subunit and related nucleases [RNA processing and modification]
Probab=99.12 E-value=1e-09 Score=99.18 Aligned_cols=72 Identities=15% Similarity=0.161 Sum_probs=47.5
Q ss_pred ccEEEEEecccch-------------hhhcCChhHHHHHHhhcCCcEEEEeccccccCC------CCCCCceEEEeccCC
Q 019834 41 PLKFVTWNANSLL-------------LRVKNNWPEFSNFITTFDPDVIALQILMRALSS------PPFKNYQIWWSLADS 101 (335)
Q Consensus 41 ~lrI~swNv~~~~-------------~~~~~~~~~l~~~i~~~~~DIv~LQEv~~~~~~------~~~~~y~~~~~~~~~ 101 (335)
.++|+|||+-... -....|...|+..|...++||+|||||....-. ....||...+.....
T Consensus 30 ~ftimTYN~Laq~y~~r~~y~~s~~aL~W~~R~~~L~~EL~~Yn~Di~CLQEvd~~~~~~fw~~~l~~~gY~~if~~k~~ 109 (378)
T COG5239 30 DFTIMTYNVLAQTYATRKMYPYSGWALKWSYRSRLLLQELLYYNADILCLQEVDAEDFEDFWKDQLGKLGYDGIFIPKER 109 (378)
T ss_pred eeEEEehhhhhhhhccccccCCchhhhhhHHHHHHHHHHHhccCCceeeeehhhhhHHHHHHHHHhcccccceEEecCCC
Confidence 7999999993211 111223366888999999999999999743211 123478666554322
Q ss_pred -----------CcceEEEEEee
Q 019834 102 -----------KYAGTALLVKK 112 (335)
Q Consensus 102 -----------~~~Gvailsr~ 112 (335)
...|++|+.+.
T Consensus 110 k~~~m~~~d~t~~dGc~if~k~ 131 (378)
T COG5239 110 KVKWMIDYDTTKVDGCAIFLKR 131 (378)
T ss_pred cccccccccccccceEEEEEEe
Confidence 24699999988
No 21
>smart00128 IPPc Inositol polyphosphate phosphatase, catalytic domain homologues. Mg(2+)-dependent/Li(+)-sensitive enzymes.
Probab=99.02 E-value=1.1e-08 Score=94.31 Aligned_cols=145 Identities=17% Similarity=0.231 Sum_probs=79.6
Q ss_pred ccEEEEEecccchhhhcCChhHHHHHHhh-------cCCcE--EEEeccc-c---c----cCC----------CCC---C
Q 019834 41 PLKFVTWNANSLLLRVKNNWPEFSNFITT-------FDPDV--IALQILM-R---A----LSS----------PPF---K 90 (335)
Q Consensus 41 ~lrI~swNv~~~~~~~~~~~~~l~~~i~~-------~~~DI--v~LQEv~-~---~----~~~----------~~~---~ 90 (335)
.+-|+||||++...... ..+..+|.. ..||| |+|||+- . . ... ..+ .
T Consensus 4 ~v~v~TwNv~~~~~~p~---~~l~~~l~~~~~~~~~~~pDI~viglQEi~~~~~~~~~~~~~~~~~~W~~~i~~~l~~~~ 80 (310)
T smart00128 4 KVLVGTWNVGGLKADPK---VDVTSWLFQKIDVKQSEKPDIYVIGLQEVVDLENGVLLETIAGKERLWSKLIESSLNGDG 80 (310)
T ss_pred EEEEEEEECCCccCCCh---hhHHHhhccccccccCCCCCEEEEEeeeecccchhhhhhccchhHHHHHHHHHHhcCCCC
Confidence 56799999998642222 456666654 67999 6699982 0 0 000 111 2
Q ss_pred CceEEEeccCCCcceEEEEEeecCCCc----e---EEeccccccccCCCCCCEEEEEeC--cEEEEEEEcCCCCCCcchh
Q 019834 91 NYQIWWSLADSKYAGTALLVKKCFQPK----K---VSFSLEKTALKYEPDGRVILAEFE--TFYLLNTYAPNNGWKEEEN 161 (335)
Q Consensus 91 ~y~~~~~~~~~~~~Gvailsr~~l~~~----~---~~~~~~~~~~~~~~~~r~i~~~~~--~~~i~~~y~~~~~~~~~~~ 161 (335)
.|....+ ...+.-++.|+.|..+.+. . +..++.. ......+..+.+.+. .+.++++|++++...
T Consensus 81 ~Y~~v~~-~~l~gi~l~vf~~~~~~~~i~~v~~~~v~~G~~~--~~~nKG~v~i~~~~~~~~~~fv~~HL~a~~~~---- 153 (310)
T smart00128 81 QYNVLAK-VRLVGILVLVFVKANHLVYIKDVETFTVKTGMGG--LWGNKGAVAVRFKLSDTSFCFVNSHLAAGASN---- 153 (310)
T ss_pred ceEEEee-eeecceEEEEEEehhhcCccceeEeeeeeccccc--eeecCceEEEEEEEcCcEEEEEeeccccccch----
Confidence 3433322 2223445778888774221 1 1111110 011222344555554 499999999997742
Q ss_pred hHHHHHHHHHHHHHHHHh--------cCCCCEEEEccCCCCCC
Q 019834 162 SFQRRRKWDKRIQEFVLQ--------CSGKPLIWCGDLNVSHE 196 (335)
Q Consensus 162 ~~~~r~~~~~~l~~~l~~--------~~~~p~Il~GDFN~~~~ 196 (335)
...|...+..+...+.- .....+|++||||-.-.
T Consensus 154 -~~~R~~~~~~I~~~~~f~~~~~~~~~~~d~~f~~GDlNyRi~ 195 (310)
T smart00128 154 -VEQRNQDYKTILRALSFPERAELSQFDHDVVFWFGDLNFRLD 195 (310)
T ss_pred -hhhhHHHHHHHHHhcCCCCCccccccccceEEEecCcceeec
Confidence 34455555565444321 13578999999997544
No 22
>KOG0620 consensus Glucose-repressible alcohol dehydrogenase transcriptional effector CCR4 and related proteins [Transcription]
Probab=98.98 E-value=1.6e-09 Score=100.83 Aligned_cols=73 Identities=21% Similarity=0.224 Sum_probs=49.6
Q ss_pred ccEEEEEecccch--------------hhhcCChhHHHHHHhhcCCcEEEEecccc--ccCC--CCCCCceEEEecc---
Q 019834 41 PLKFVTWNANSLL--------------LRVKNNWPEFSNFITTFDPDVIALQILMR--ALSS--PPFKNYQIWWSLA--- 99 (335)
Q Consensus 41 ~lrI~swNv~~~~--------------~~~~~~~~~l~~~i~~~~~DIv~LQEv~~--~~~~--~~~~~y~~~~~~~--- 99 (335)
.++|+|||+.... .....+...+.+.|...++|++|||||.. .+-. ....||...+...
T Consensus 19 ~~~v~s~n~l~~~~~~~~~~~~~~~~~~~w~~r~~~~~~ei~~~~ad~icLqev~~~~~~~~p~l~~~gY~g~~~~k~~~ 98 (361)
T KOG0620|consen 19 TFTVLSYNILSQLYATSKLYMYCPSWALSWEYRRQLLLEEILNYNADILCLQEVDRYHDFFSPELEASGYSGIFIEKTRM 98 (361)
T ss_pred eEEeechhhhhhhhcccCCCcccchhhccHHHHHHHHHHHHhCCCcceeecchhhHHHHHccchhhhcCCcceeeccccc
Confidence 8999999994321 11222346788888889999999999831 1111 1224898777752
Q ss_pred ----CCCcceEEEEEeec
Q 019834 100 ----DSKYAGTALLVKKC 113 (335)
Q Consensus 100 ----~~~~~Gvailsr~~ 113 (335)
.+...|++|+.|.+
T Consensus 99 ~~~~~~~~dGcaiffk~s 116 (361)
T KOG0620|consen 99 GEVELEKIDGCAIFFKPS 116 (361)
T ss_pred chhhcccCceeeeeecch
Confidence 34478999999887
No 23
>COG2374 Predicted extracellular nuclease [General function prediction only]
Probab=98.75 E-value=3e-07 Score=90.45 Aligned_cols=240 Identities=18% Similarity=0.173 Sum_probs=131.0
Q ss_pred CCCCCccEEEEEecccc-h----------hh-----------hcCChhHHHHHHhhcCCcEEEEeccccc---------c
Q 019834 36 NSKKDPLKFVTWNANSL-L----------LR-----------VKNNWPEFSNFITTFDPDVIALQILMRA---------L 84 (335)
Q Consensus 36 ~~~~~~lrI~swNv~~~-~----------~~-----------~~~~~~~l~~~i~~~~~DIv~LQEv~~~---------~ 84 (335)
.-..+.|||.+|||.+. . .. .+.....++..|..+++||+.|-|+... +
T Consensus 458 ~~v~G~LkiasfNVlNyf~~~~~~g~~~~~~~d~rga~~~~e~~~Q~~k~v~ai~~ldaDV~GL~Eien~~~~~~s~~ai 537 (798)
T COG2374 458 PDVGGSLKIASFNVLNYFNKLSGDGGGASTFSDCRGANTTEEFARQRAKIVTAILTLDADVLGLMEIENNGYGTDSGDAI 537 (798)
T ss_pred cccCceeeeeeeehhhhhccCCCCCCCccccccccCccchhHHHHHHHHHHHHHhhcchhhheeeeeeccCCCCCcHHHH
Confidence 44567999999999321 0 00 1111366888899999999999998521 1
Q ss_pred C--------CCCCC-CceEEEeccCCC----cceEEEEEeecCCCceEEec----cccccccCC------CCCCE-E---
Q 019834 85 S--------SPPFK-NYQIWWSLADSK----YAGTALLVKKCFQPKKVSFS----LEKTALKYE------PDGRV-I--- 137 (335)
Q Consensus 85 ~--------~~~~~-~y~~~~~~~~~~----~~Gvailsr~~l~~~~~~~~----~~~~~~~~~------~~~r~-i--- 137 (335)
. +...+ .|.++......+ .-++++++|.. .+... ......+.. ...|. +
T Consensus 538 ~~lV~~lna~~G~~~~y~~v~p~~~~~lgtD~I~vg~iY~~~----~V~~~g~~~~~~~~a~~~v~~~~~~n~R~~laqt 613 (798)
T COG2374 538 AQLVNALNAKAGAGTRYAFVAPGRNGGLGTDAIRVGFIYKPS----AVSLVGKAAIVDNDAFLGVGEIDDNNARPPLAQT 613 (798)
T ss_pred HHHHHHHHhhcCCCceEEEEecCccCCcCCCceeEEEEeccc----eEEecccccccccccccccccccccccCcchhhh
Confidence 0 01112 454444322211 44688888764 11111 000000000 00111 0
Q ss_pred ---EEEeCcEEEEEEEcCCCCCCcc---------hhhHHHHHHHHHHHHHHHHhc----CCCCEEEEccCCCCCCcccCc
Q 019834 138 ---LAEFETFYLLNTYAPNNGWKEE---------ENSFQRRRKWDKRIQEFVLQC----SGKPLIWCGDLNVSHEEIDVS 201 (335)
Q Consensus 138 ---~~~~~~~~i~~~y~~~~~~~~~---------~~~~~~r~~~~~~l~~~l~~~----~~~p~Il~GDFN~~~~~~~~~ 201 (335)
......|+++.-|+.+.+.... ...-..|.++...|..|+... .+.+++|+||||.-..+.
T Consensus 614 F~~~~~~ekfvvVvNHfkSKgs~~p~~gd~~dgQg~~~~~R~~~AqaL~~~la~~~~~~~d~~~viLGD~N~y~~ed--- 690 (798)
T COG2374 614 FQDLSGGEKFVVVVNHFKSKGSDCPVDGDTQDGQGNSNQTRVRAAQALAAFLATNPTGKADADIVILGDFNDYAFED--- 690 (798)
T ss_pred hhhccCCcEEEEEEeeecccCCCCCCcccccccccchhhHHHHHHHHHHHHHhhCcccccCCCEEEEeccchhhhcc---
Confidence 0111358888889877655421 011123778889999999852 578999999999732221
Q ss_pred CchhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHHHhccCCeeEeeecccCCCCCCceeeeeCCCCCCcCCCcceeEEE
Q 019834 202 HPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYF 281 (335)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~riD~i 281 (335)
-++ .+..+++......+++.. ..|+|.. .+....+||+
T Consensus 691 --------------------------------pI~-~l~~aGy~~l~~~~~~~~---~~YSY~f------~G~~gtLDha 728 (798)
T COG2374 691 --------------------------------PIQ-ALEGAGYMNLAARFHDAG---DRYSYVF------NGQSGTLDHA 728 (798)
T ss_pred --------------------------------HHH-HHhhcCchhhhhhccCCC---CceEEEE------CCccchHhhh
Confidence 111 222223444444444322 3466542 2223699999
Q ss_pred EeChhhhcceeeeeecc-Cccc--------------------cCCcCCCCccceEEEEecCCCc
Q 019834 282 IVSEELKDRIIACEMQG-HGIE--------------------LEGFYGSDHCPVSLELSEASSD 324 (335)
Q Consensus 282 ~~s~~~~~~~~~~~v~~-~~~~--------------------~~~~~~SDH~pV~~~~~~~~~~ 324 (335)
|+|..+..++....... ++.+ ......|||=||++.|.+....
T Consensus 729 Las~sl~~~v~~a~ewHINAdE~~~ldYn~~Fk~q~~~~~~~~~~fR~SDHDPvvvglnL~~~a 792 (798)
T COG2374 729 LASASLAAQVSGATEWHINADEPDALDYNLEFKGQNVSLYKTTNPFRASDHDPVVVGLNLLGTA 792 (798)
T ss_pred hhhhhhhhhccCceeeeecccccchhhhhhhhccccccccccCCccccCCCCCeEEEEEecccc
Confidence 99999886664443321 1110 1234679999999999987543
No 24
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.29 E-value=1.3e-05 Score=80.60 Aligned_cols=48 Identities=19% Similarity=0.207 Sum_probs=32.2
Q ss_pred eEEEEeChhhhcceeeeeeccCccccCCcCCCCccceEEEEecCCCchHHHhhhcC
Q 019834 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEASSDSEKREKKNL 333 (335)
Q Consensus 278 iD~i~~s~~~~~~~~~~~v~~~~~~~~~~~~SDH~pV~~~~~~~~~~~~~~~~~~~ 333 (335)
-|+|+...+.... ..+. ......|||.||.+.|+........+++++|
T Consensus 797 TDRIL~r~e~~~~-l~Y~-------~~el~~SDHRPV~A~~~a~i~~Vd~~kk~~l 844 (1080)
T KOG0566|consen 797 TDRILWRGEKLEL-LSYK-------RAELKTSDHRPVYAIFRAEIFEVDEQKKLRL 844 (1080)
T ss_pred hhhheeccccccc-cccc-------cccccccCCCceEEEEEEEEEEEcHHHHHHH
Confidence 4888877765411 1111 1124679999999999988888777777654
No 25
>COG5411 Phosphatidylinositol 5-phosphate phosphatase [Signal transduction mechanisms]
Probab=96.31 E-value=0.015 Score=54.72 Aligned_cols=47 Identities=19% Similarity=0.272 Sum_probs=32.2
Q ss_pred cEEEEEEEcCCCCCCcchhhHHHHHHHHHHHHHHHHh------cCCCCEEEEccCCCC
Q 019834 143 TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ------CSGKPLIWCGDLNVS 194 (335)
Q Consensus 143 ~~~i~~~y~~~~~~~~~~~~~~~r~~~~~~l~~~l~~------~~~~p~Il~GDFN~~ 194 (335)
.+.+++.|+.++.. .+.+|..-.+.+...|.- .....++++||||..
T Consensus 166 ~~cFv~shlaag~~-----N~eeR~~Dy~~I~~~i~f~~g~~I~~hdti~w~GDlNyR 218 (460)
T COG5411 166 SFCFVNSHLAAGVN-----NIEERIFDYRSIASNICFSRGLRIYDHDTIFWLGDLNYR 218 (460)
T ss_pred CcEEEecchhcccc-----cHHHHHHHHHHHHHheecCCCceecccceEEEecccCce
Confidence 68888888887773 344566666666665542 244679999999963
No 26
>PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional
Probab=95.91 E-value=0.1 Score=51.68 Aligned_cols=52 Identities=19% Similarity=0.172 Sum_probs=29.8
Q ss_pred CcEEEEEEEcCCCCCCcchhhHHHHHHHHHHHHHHHH--h----------cCCCCEEEEccCCCCCC
Q 019834 142 ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVL--Q----------CSGKPLIWCGDLNVSHE 196 (335)
Q Consensus 142 ~~~~i~~~y~~~~~~~~~~~~~~~r~~~~~~l~~~l~--~----------~~~~p~Il~GDFN~~~~ 196 (335)
..+.++++|+.++.... ...+|...+..+...+. . .....+|++||||-.-.
T Consensus 420 Ts~cFVn~HLAAg~~~~---~~~rRN~D~~~I~~~l~F~~~~~~~~~~~I~dhD~vFWlGDLNYRId 483 (621)
T PLN03191 420 SRLCFVCSHLTSGHKDG---AEQRRNADVYEIIRRTRFSSVLDTDQPQTIPSHDQIFWFGDLNYRLN 483 (621)
T ss_pred cEEEEEEeccccccccc---hHHHHHHHHHHHHhccccCcccccCCCccccccceEEEecCcccccc
Confidence 46999999999876321 12223333333332210 0 12458999999997543
No 27
>PTZ00312 inositol-1,4,5-triphosphate 5-phosphatase; Provisional
Probab=89.41 E-value=0.99 Score=40.74 Aligned_cols=55 Identities=18% Similarity=0.101 Sum_probs=35.0
Q ss_pred cEEEEEEEcCCCCCCcch------hhHHHHHHHHHHHHHHHHh--cCCCCEEEEccCCCCCCc
Q 019834 143 TFYLLNTYAPNNGWKEEE------NSFQRRRKWDKRIQEFVLQ--CSGKPLIWCGDLNVSHEE 197 (335)
Q Consensus 143 ~~~i~~~y~~~~~~~~~~------~~~~~r~~~~~~l~~~l~~--~~~~p~Il~GDFN~~~~~ 197 (335)
.+.++|+|+-+...+-.. .-...|++-+....+.+.. ....++++.||||-..+.
T Consensus 81 ~fdfVNiHLFHDaSNl~A~~tSPSiYS~~RqrAL~~iL~r~~~~~~~~~~lF~fGDfNyRld~ 143 (356)
T PTZ00312 81 VVNVLNVHLYNDDDNRVAAASSPSLYTGQRQEALLEAIAECSAFISPSDPLFIFGDFNVRLDG 143 (356)
T ss_pred EEEEEEeeccCCcchhhHHhcCCchhHHHHHHHHHHHHHHHhhccCCCCcEEEeccceeeecc
Confidence 588999999877654221 1222355555555544433 367899999999986543
No 28
>KOG1976 consensus Inositol polyphosphate 5-phosphatase, type I [Lipid transport and metabolism]
Probab=68.46 E-value=11 Score=34.29 Aligned_cols=61 Identities=10% Similarity=0.036 Sum_probs=39.9
Q ss_pred EEEeCcEEEEEEEcCCCCCC-----cc-hhhHHHHHHHHHHHHHHHHhc--CCCCEEEEccCCCCCCcc
Q 019834 138 LAEFETFYLLNTYAPNNGWK-----EE-ENSFQRRRKWDKRIQEFVLQC--SGKPLIWCGDLNVSHEEI 198 (335)
Q Consensus 138 ~~~~~~~~i~~~y~~~~~~~-----~~-~~~~~~r~~~~~~l~~~l~~~--~~~p~Il~GDFN~~~~~~ 198 (335)
.+....+.++|+|+=+.... .. ......|.+.++.+.+.|.+. ....+++.||||...++.
T Consensus 165 ~I~~k~fdfVN~hLFhD~snla~~~sspt~ys~~R~~al~~vL~el~~~~~~~~~~fVfGdfNfrLds~ 233 (391)
T KOG1976|consen 165 RIHGKEFDFVNLHLFHDVSNLATKNSSPTKYSSKREQALEMVLKELDEEGLRNDAIFVFGDFNFRLDST 233 (391)
T ss_pred EEcCceeeeeehhhhcchhhhhhhcCChhhhhhhHHHHHHHHHHHHHhhccCceEEEEecccccccchH
Confidence 34446799999998554321 11 122334677788888777653 445788999999977663
No 29
>PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional
Probab=64.73 E-value=5.8 Score=39.66 Aligned_cols=40 Identities=25% Similarity=0.397 Sum_probs=26.5
Q ss_pred CCCccEEEEEecccchhhhcCChhHHHHHHhhcC-CcE--EEEecc
Q 019834 38 KKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFD-PDV--IALQIL 80 (335)
Q Consensus 38 ~~~~lrI~swNv~~~~~~~~~~~~~l~~~i~~~~-~DI--v~LQEv 80 (335)
..-.+-|+||||+|-..... -.|..+|...+ +|| |.|||+
T Consensus 106 ~~~rv~v~TWNV~g~~p~~~---l~l~~wl~~~~p~DiyviG~QE~ 148 (621)
T PLN03191 106 KDIRVTIGTWNVAGRLPSED---LEIEDWLSTEEPADIYIIGFQEV 148 (621)
T ss_pred cceEEEEEEeecCCCCCccc---CCHHHhccCCCCCCEEEEeeEEe
Confidence 33456688999998654332 34777777554 476 568997
No 30
>KOG1294 consensus Apurinic/apyrimidinic endonuclease and related enzymes [Replication, recombination and repair]
Probab=37.57 E-value=2.4e+02 Score=26.36 Aligned_cols=60 Identities=25% Similarity=0.446 Sum_probs=38.0
Q ss_pred CCCCCEEEEEeCcEEEEEEEcCCCCCCcchhhHHHHHHHHHHHHHHHHh--cCCCCEEEEccCCCCCCcc
Q 019834 131 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ--CSGKPLIWCGDLNVSHEEI 198 (335)
Q Consensus 131 ~~~~r~i~~~~~~~~i~~~y~~~~~~~~~~~~~~~r~~~~~~l~~~l~~--~~~~p~Il~GDFN~~~~~~ 198 (335)
+..++.+......+.+.++|.|......... +..+...+...++. ..+.++++ |..+...
T Consensus 10 ~~~~~~~~~~k~~~~~~~v~~~~~~~e~~~~----~~~~~~~l~~r~~~~~~~g~~~~~----~i~~~~i 71 (335)
T KOG1294|consen 10 DSEGRCVIVDKEMFVLINVYCPRNSPEISKR----RLRFAKVLHYRVEKLLKQGNRKVL----NICPWDI 71 (335)
T ss_pred hccCCeeeeecccccccceeccccCCcchhh----hhhhhhHHHHHHHHHHHhCCeeEe----ecCchhh
Confidence 4567777777777999999999887543221 44555555555544 24566666 6666553
No 31
>PLN02504 nitrilase
Probab=27.43 E-value=1.2e+02 Score=28.48 Aligned_cols=43 Identities=5% Similarity=0.120 Sum_probs=23.4
Q ss_pred CCCCCccE--EEEEecccchhhhcCChhHHHHHHh---hcCCcEEEEecc
Q 019834 36 NSKKDPLK--FVTWNANSLLLRVKNNWPEFSNFIT---TFDPDVIALQIL 80 (335)
Q Consensus 36 ~~~~~~lr--I~swNv~~~~~~~~~~~~~l~~~i~---~~~~DIv~LQEv 80 (335)
++....|| +++.++.-.. ..++...+.++|. +.++|+|+|+|.
T Consensus 19 ~~~~~~~kiAlvQ~~~~~~d--~~~nl~~~~~li~eAa~~gadLIVfPE~ 66 (346)
T PLN02504 19 DASSSTVRATVVQASTVFYD--TPATLDKAERLIAEAAAYGSQLVVFPEA 66 (346)
T ss_pred cccCCceEEEEEEcCcccCC--HHHHHHHHHHHHHHHHHCCCeEEEeCcc
Confidence 33344555 5566653211 1112234444444 667999999997
No 32
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=26.18 E-value=84 Score=25.89 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEccCCC
Q 019834 167 RKWDKRIQEFVLQCSGKPLIWCGDLNV 193 (335)
Q Consensus 167 ~~~~~~l~~~l~~~~~~p~Il~GDFN~ 193 (335)
++.++.+.+.+.+.....+|++||+=.
T Consensus 27 ~~~~~~l~~~~~~~~~d~lii~GDl~~ 53 (172)
T cd07391 27 EDTLERLDRLIEEYGPERLIILGDLKH 53 (172)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCcccc
Confidence 356677778877767788999999863
No 33
>PRK13286 amiE acylamide amidohydrolase; Provisional
Probab=21.13 E-value=1.2e+02 Score=28.48 Aligned_cols=45 Identities=18% Similarity=0.161 Sum_probs=25.4
Q ss_pred CCCCccEEEEEecc--cc--hhhhcCChhHHHHHHhh-----cCCcEEEEeccc
Q 019834 37 SKKDPLKFVTWNAN--SL--LLRVKNNWPEFSNFITT-----FDPDVIALQILM 81 (335)
Q Consensus 37 ~~~~~lrI~swNv~--~~--~~~~~~~~~~l~~~i~~-----~~~DIv~LQEv~ 81 (335)
+....|+|+..+.+ .+ ......+...+.+.|.+ ..+|+|+|+|..
T Consensus 8 ~~~~~l~va~vQ~~~p~~~~~~di~~Nl~~i~~~i~~a~~~~~gadLVVfPE~~ 61 (345)
T PRK13286 8 SSNDTVGVAVVNYKMPRLHTKAEVLENARKIADMIVGMKQGLPGMDLVIFPEYS 61 (345)
T ss_pred CCCCceEEEEEEcCCCccCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEcCCcc
Confidence 34455665554442 22 22233334566666644 359999999963
No 34
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=20.59 E-value=1.1e+02 Score=27.03 Aligned_cols=29 Identities=28% Similarity=0.355 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHhcCCCCEEEEccCCCC
Q 019834 166 RRKWDKRIQEFVLQCSGKPLIWCGDLNVS 194 (335)
Q Consensus 166 r~~~~~~l~~~l~~~~~~p~Il~GDFN~~ 194 (335)
+.+..+.+...+.......+|+.||+=..
T Consensus 48 ~~~~~~~l~~ii~~~~p~~lIilGD~KH~ 76 (235)
T COG1407 48 TDRILKRLDRIIERYGPKRLIILGDLKHE 76 (235)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCccccc
Confidence 45666677777777788899999998753
No 35
>TIGR00228 ruvC crossover junction endodeoxyribonuclease RuvC. Endonuclease that resolves Holliday junction intermediates in genetic recombination. The active form of the protein is a dimer. Structure studies reveals that the catalytic center, comprised of four acidic residues, lies at the bottom of a cleft that fits a DNA duplex. The model hits a single Synechocystis PCC6803 protein at a score of 30, below the trusted cutoff, that appears orthologous and may act as authentic RuvC.
Probab=20.47 E-value=1.3e+02 Score=24.80 Aligned_cols=42 Identities=21% Similarity=0.381 Sum_probs=29.1
Q ss_pred CccEEEEEecc-----cchhhhcCChhHHHHHHhhcCCcEEEEeccc
Q 019834 40 DPLKFVTWNAN-----SLLLRVKNNWPEFSNFITTFDPDVIALQILM 81 (335)
Q Consensus 40 ~~lrI~swNv~-----~~~~~~~~~~~~l~~~i~~~~~DIv~LQEv~ 81 (335)
..++++.+-+= .+..+.....+.|.++|.+++||.+++-++.
T Consensus 21 ~~~~~v~~G~I~t~~~~~~~RL~~I~~~l~~~i~~y~P~~~aiE~~F 67 (156)
T TIGR00228 21 RQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQPNYFAIEQVF 67 (156)
T ss_pred CeEEEEEeeEEECCCCCHHHHHHHHHHHHHHHHHHhCCCEEEEeHHh
Confidence 45666666551 2334444445778889999999999998874
Done!