Query 019834
Match_columns 335
No_of_seqs 121 out of 1341
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 07:47:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019834.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019834hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g91_A MTH0212, exodeoxyribonu 100.0 3.6E-37 1.2E-41 276.4 24.0 251 41-325 3-262 (265)
2 2j63_A AP-endonuclease; base e 100.0 2E-36 6.8E-41 291.0 26.2 258 39-321 147-467 (467)
3 2voa_A AF_EXO, XTHA, exodeoxyr 100.0 5.3E-34 1.8E-38 253.9 26.7 248 41-320 1-257 (257)
4 2o3h_A DNA-(apurinic or apyrim 100.0 1E-33 3.4E-38 256.4 27.8 252 36-320 23-285 (285)
5 1hd7_A DNA-(apurinic or apyrim 100.0 4.1E-34 1.4E-38 263.6 23.8 251 37-320 57-318 (318)
6 2jc4_A Exodeoxyribonuclease II 100.0 1.8E-33 6.1E-38 250.0 26.5 248 42-320 1-256 (256)
7 2jc5_A Exodeoxyribonuclease; h 100.0 9.4E-34 3.2E-38 252.2 24.5 249 41-322 1-258 (259)
8 1vyb_A ORF2 contains A reverse 100.0 2E-32 6.7E-37 240.5 22.1 227 38-319 4-238 (238)
9 1ako_A Exonuclease III; AP-end 100.0 1.5E-32 5.3E-37 245.6 20.8 251 42-319 1-267 (268)
10 4gew_A 5'-tyrosyl-DNA phosphod 100.0 8.2E-31 2.8E-35 245.6 15.3 233 34-319 112-361 (362)
11 4fva_A 5'-tyrosyl-DNA phosphod 100.0 2.1E-29 7.2E-34 222.9 17.0 232 36-319 8-255 (256)
12 2ei9_A Non-LTR retrotransposon 100.0 3.5E-29 1.2E-33 221.6 15.7 216 40-324 6-223 (240)
13 1wdu_A TRAS1 ORF2P; four-layer 100.0 5.9E-28 2E-32 213.9 21.8 222 39-321 17-244 (245)
14 4gz1_A Tyrosyl-DNA phosphodies 100.0 2E-28 6.7E-33 216.5 13.3 236 38-320 6-254 (256)
15 4f1h_A Tyrosyl-DNA phosphodies 100.0 1.2E-27 3.9E-32 209.4 15.6 234 40-320 2-250 (250)
16 3teb_A Endonuclease/exonucleas 99.9 7.5E-27 2.6E-31 208.3 19.0 233 39-320 1-266 (266)
17 3g6s_A Putative endonuclease/e 99.9 1.7E-25 5.9E-30 200.2 17.6 235 40-324 2-264 (267)
18 3l1w_A Uncharacterized protein 99.9 6.5E-25 2.2E-29 195.3 20.2 227 42-322 1-253 (257)
19 3mpr_A Putative endonuclease/e 99.9 6.8E-24 2.3E-28 193.3 16.5 235 39-323 4-292 (298)
20 1zwx_A SMCL, sphingomyelinase- 99.9 1.8E-23 6E-28 190.3 15.9 158 38-197 7-202 (301)
21 3i41_A Beta-hemolysin; beta to 99.9 1.2E-22 3.9E-27 187.0 14.4 159 37-197 25-221 (317)
22 2ddr_A Sphingomyelin phosphodi 99.9 1.2E-21 4.1E-26 178.4 20.3 159 38-197 6-202 (306)
23 2f1n_A CDT B, cytolethal diste 99.8 8.1E-20 2.8E-24 158.9 15.1 148 38-198 12-193 (262)
24 3ngq_A CCR4-NOT transcription 99.8 2.2E-19 7.4E-24 169.0 14.8 155 39-198 29-261 (398)
25 1sr4_B CDT B, cytolethal diste 99.8 2E-18 6.9E-23 151.8 18.1 144 40-194 3-181 (261)
26 2a40_B Deoxyribonuclease-1; WA 99.8 9.8E-18 3.3E-22 149.5 15.9 147 42-196 1-174 (260)
27 4b8c_D Glucose-repressible alc 99.7 9.5E-19 3.2E-23 177.8 4.9 155 38-198 391-611 (727)
28 2imq_X Salivary nitrophorin; f 99.5 1.4E-15 4.7E-20 137.3 -0.2 145 40-196 7-177 (282)
29 1i9z_A Synaptojanin, phosphati 99.5 4.8E-13 1.6E-17 123.5 14.2 141 40-194 25-211 (347)
30 2xsw_A 72 kDa inositol polypho 99.3 1.4E-11 4.9E-16 114.0 12.8 148 39-196 25-210 (357)
31 3mtc_A Type II inositol-1,4,5- 99.0 8.7E-09 3E-13 93.0 16.6 144 41-196 9-196 (313)
32 4a9c_A Phosphatidylinositol-3, 98.8 5.9E-08 2E-12 87.8 13.9 146 39-195 7-196 (316)
33 3p8k_A Hydrolase, carbon-nitro 39.5 18 0.00062 31.3 3.1 45 37-81 16-63 (281)
34 3hkx_A Amidase; alpha-beta-BET 33.9 24 0.00081 30.6 2.9 42 38-81 17-63 (283)
No 1
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=100.00 E-value=3.6e-37 Score=276.38 Aligned_cols=251 Identities=27% Similarity=0.531 Sum_probs=196.1
Q ss_pred ccEEEEEecccchhhhcCChhHHHHHHhhcCCcEEEEeccccccCCC-----CCCCceEEEecc-CCCcceEEEEEeecC
Q 019834 41 PLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSP-----PFKNYQIWWSLA-DSKYAGTALLVKKCF 114 (335)
Q Consensus 41 ~lrI~swNv~~~~~~~~~~~~~l~~~i~~~~~DIv~LQEv~~~~~~~-----~~~~y~~~~~~~-~~~~~Gvailsr~~l 114 (335)
.|||+||||+|++.+.+ ..+.++|++.+||||||||++...... ...+|..++... ..++.|++|++|.+
T Consensus 3 ~l~i~s~Nv~g~~~~~~---~~l~~~i~~~~~DIv~LQEt~~~~~~~~~~~~~~~gy~~~~~~~~~~~~~Gvail~k~~- 78 (265)
T 3g91_A 3 VLKIISWNVNGLRAVHR---KGFLKWFMEEKPDILCLQEIKAAPEQLPRKLRHVEGYRSFFTPAERKGYSGVAMYTKVP- 78 (265)
T ss_dssp EEEEEEEECSCHHHHHH---HTHHHHHHHHCCSEEEEECCCSCGGGSCHHHHCCTTCEEEEECBSSTTSCCEEEEESSC-
T ss_pred ccEEEEEEcCCchhhhh---hhHHHHHHhcCCCEEEEEeccccccccChhhhcccCCcEEEccCCCCCcCEEEEEEecC-
Confidence 69999999999988764 258999999999999999997432221 136898777643 35578999999986
Q ss_pred CCceEEeccccccccCCCCCCEEEEEeCcEEEEEEEcCCCCCCcchhhHHHHHHHHHHHHHHHHhc--CCCCEEEEccCC
Q 019834 115 QPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC--SGKPLIWCGDLN 192 (335)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~r~i~~~~~~~~i~~~y~~~~~~~~~~~~~~~r~~~~~~l~~~l~~~--~~~p~Il~GDFN 192 (335)
+..+...+. ....+..+|++.+....+.|+++|+|+.... ..++..|..+++.+.+++.+. .+.++|||||||
T Consensus 79 -~~~~~~~~~--~~~~d~~gr~i~~~~~~~~i~~vy~p~~~~~--~~~~~~r~~~~~~l~~~~~~~~~~~~~~ii~GDfN 153 (265)
T 3g91_A 79 -PSSLREGFG--VERFDTEGRIQIADFDDFLLYNIYFPNGAMS--EERLKYKLEFYDAFLEDVNRERDSGRNVIICGDFN 153 (265)
T ss_dssp -CSEEECCCS--CHHHHSBSCEEEEECSSCEEEEEECCCCTTC--HHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred -hHHhccCCC--CcccCCcCCEEEEEeCCEEEEEEEecCCCCC--chhHHHHHHHHHHHHHHHHHHHcCCCCEEEECccc
Confidence 333433332 1223467899999999999999999998863 356667889999999988764 368999999999
Q ss_pred CCCCcccCcCchhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHHHhccCCeeEeeecccCCCCCCceeeeeCCCCCCc-
Q 019834 193 VSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKY- 271 (335)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~T~~~~~~~~~- 271 (335)
+.+...|..++.. ..+..++.+.++..+..+++. +|+|+|+..+|.. ..|||+++..+..
T Consensus 154 ~~~~~~d~~~~~~---------------~~~~~~~~~~~~~~~~~l~~~-gl~D~~r~~~p~~---~~yT~~~~~~~~~~ 214 (265)
T 3g91_A 154 TAHREIDLARPKE---------------NSNVSGFLPVERAWIDKFIEN-GYVDTFRMFNSDP---GQYTWWSYRTRARE 214 (265)
T ss_dssp CCCSGGGBSCTGG---------------GTTSTTSCHHHHHHHHHHHHT-TEEETHHHHCCCS---CCCSBCCSSTTTTT
T ss_pred cCCchhhccCHhh---------------cCCCCccCHHHHHHHHHHHhc-CcEEeeHhhCCCC---CCCCCcCCCCCccc
Confidence 9998877776542 236778889899999999954 4999999999875 4799998766544
Q ss_pred CCCcceeEEEEeChhhhcceeeeeeccCccccCCcCCCCccceEEEEecCCCch
Q 019834 272 RGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEASSDS 325 (335)
Q Consensus 272 ~~~~~riD~i~~s~~~~~~~~~~~v~~~~~~~~~~~~SDH~pV~~~~~~~~~~~ 325 (335)
.+.+.||||||+|.++..++..+.+... ..+|||+||+++|..+..+.
T Consensus 215 ~~~~~rID~il~s~~~~~~~~~~~i~~~------~~~SDH~Pv~~~~~~~~~~~ 262 (265)
T 3g91_A 215 RNVGWRLDYFFVNEEFKGKVKRSWILSD------VMGSDHCPIGLEIELLEHHH 262 (265)
T ss_dssp TTCCBCCEEEEEEGGGGGGEEEEEECTT------CCSSSBCCEEEEEECCCCC-
T ss_pred cCceEEEEEEEECHHHHhhhcEEEEeCC------CCCCCcceEEEEhhhhhhcc
Confidence 4567899999999999988999998753 36799999999999776543
No 2
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=100.00 E-value=2e-36 Score=291.02 Aligned_cols=258 Identities=25% Similarity=0.385 Sum_probs=187.7
Q ss_pred CCccEEEEEecccchhhhcCChhHHHHHHhhcCCcEEEEeccccccC------CCC-CCCceEEEec--cCCCcceEEEE
Q 019834 39 KDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALS------SPP-FKNYQIWWSL--ADSKYAGTALL 109 (335)
Q Consensus 39 ~~~lrI~swNv~~~~~~~~~~~~~l~~~i~~~~~DIv~LQEv~~~~~------~~~-~~~y~~~~~~--~~~~~~Gvail 109 (335)
...|||+||||+|++...++++..|.++|++++||||||||++..-. ... +.+|++++.. ...++.|++||
T Consensus 147 ~~~LKI~TwNVnGl~~~~kr~~~~i~~~I~~~~pDIVcLQEtk~~~~~~~~~~~la~~~GY~~~~~~~~~~~g~~GVAIl 226 (467)
T 2j63_A 147 SRMYKFITWNVAGLRGLLKKNASALRAFMEAEKPDVLCLQETKLNVDEADANATLGVVDGYSFVDHPCAFKRGYSGTRTY 226 (467)
T ss_dssp TTEEEEEEEECSCHHHHHHHCTTHHHHHHHHHCCSEEEEECCCCCTTCHHHHHTSSCCTTEEEEEECCSSSTTSCCEEEE
T ss_pred CCCeEEEEEEcCCCcccccccHHHHHHHHHHcCCCEEEEEecccchhccchHHHHhhcCCceEEEecccCCCCcceEEEE
Confidence 45799999999999876644335799999999999999999974211 122 4689877764 24568899999
Q ss_pred EeecCCC--c--eEEeccccc---------------cccCCCCCCEEEEEe----------CcEEEEEEEcCCCCCCcch
Q 019834 110 VKKCFQP--K--KVSFSLEKT---------------ALKYEPDGRVILAEF----------ETFYLLNTYAPNNGWKEEE 160 (335)
Q Consensus 110 sr~~l~~--~--~~~~~~~~~---------------~~~~~~~~r~i~~~~----------~~~~i~~~y~~~~~~~~~~ 160 (335)
+|+++.+ + .....+... ....+..+|++.+.+ ..+.|+|+|+|+.....
T Consensus 227 sR~pi~~~~l~~~~~~~~~~p~~~~~~~~~gs~~~~~~~~D~egR~I~a~~~~~g~~~~~~~~~~vinvYlP~~~~~~-- 304 (467)
T 2j63_A 227 MKNSTTVKGLHARCTRGFALPSEPQADAAAGSRVLVEGAGDEEGRVLTTFLSPDPDSASSSSRIALVNTYVANSGMGL-- 304 (467)
T ss_dssp EECCCCCCTSCCEEEESSCCCCC-----------CCCCCCCTTCCEEEEEECSSCCC----CCEEEEEEECCCCCTTS--
T ss_pred EeCCccccccceeeeeccccccccccccccccccccccccCCCCcEEEEEEEeCCcccccCceEEEEEEECCCCCcch--
Confidence 9997521 0 122222210 012345789988887 67999999999987543
Q ss_pred hhHHHHH-HHHHHHHHHHHhc--------------------CCCCEEEEccCCCCCCcccCcC---chhhhhhhcCCCCC
Q 019834 161 NSFQRRR-KWDKRIQEFVLQC--------------------SGKPLIWCGDLNVSHEEIDVSH---PEFFAAAKLNGYVP 216 (335)
Q Consensus 161 ~~~~~r~-~~~~~l~~~l~~~--------------------~~~p~Il~GDFN~~~~~~~~~~---~~~~~~~~~~~~~~ 216 (335)
+++..|. .|++.|.+++... .+.|+|||||||+.+...|.++ +..
T Consensus 305 ~r~~~K~~~~~~~L~~~l~~l~~~~~~~~~~r~~~a~g~~~~~~pvIL~GDFN~~p~~~D~~~~~~~~~----------- 373 (467)
T 2j63_A 305 TRLPYRVQSFDPSMREYLHRLDTWATENAAVPSAAAMGSGSSPHGFIWAGDLNVAERDYDRYYAGTFKS----------- 373 (467)
T ss_dssp TTHHHHHHTHHHHHHHHHHHHHHHHTTTTC----------CCSCEEEEEEECCCCCSTTSBCCCSCHHH-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccccccchhhhhcccccCCcEEEeccccCCCchhhhccccchhh-----------
Confidence 3444454 3446665555432 3579999999999998877765 321
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhccCCeeEeeecccCCCCCCceeeeeCCCCCCc-CCCcceeEEEEeChhhhcceeeee
Q 019834 217 PNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKY-RGKRMRIDYFIVSEELKDRIIACE 295 (335)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~T~~~~~~~~~-~~~~~riD~i~~s~~~~~~~~~~~ 295 (335)
+.+..++++.++.+|..++...+|+|+|+.++|... +.||||++....+ .+.+.||||||+++.+..++.++.
T Consensus 374 ----~~~~~gf~~~er~~~~~lL~~~gL~DafR~~~p~~~--~~yTw~s~r~~~~~~n~g~RIDyIlvS~~l~~~v~~~~ 447 (467)
T 2j63_A 374 ----MQECSGFAPEERMSFRETMQRTNSVDIFRQLYPQAG--PVYSFWSQRINGRPRNLGWRLDYFVVSSRLASYVVDCF 447 (467)
T ss_dssp ----HTTSTTSCHHHHHHHHHHHHHTTEEEHHHHHCTTBC--SCCSBCCTTTTTTTTTCCBCCEEEEEEGGGGGGEEEEE
T ss_pred ----cccccccCHHHHHHHHHHHhhCCCEEehHhhCCCCC--CCccccCCCCCcccCCCCceeEEEEEcHHHHcceeEEE
Confidence 125578889999999998876669999999988643 4699998765443 456799999999999988889998
Q ss_pred eccCccccCCcCCCCccceEEEEecC
Q 019834 296 MQGHGIELEGFYGSDHCPVSLELSEA 321 (335)
Q Consensus 296 v~~~~~~~~~~~~SDH~pV~~~~~~~ 321 (335)
+... ..+|||+||+++|.++
T Consensus 448 I~~~------~~~SDH~PV~~~l~~p 467 (467)
T 2j63_A 448 PMPT------VMGSDHCPFQMWMRHP 467 (467)
T ss_dssp ECTT------CCSSSBCCEEEEEECC
T ss_pred ECCC------CCCCCcccEEEEEEcC
Confidence 8753 3689999999999863
No 3
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=100.00 E-value=5.3e-34 Score=253.91 Aligned_cols=248 Identities=24% Similarity=0.369 Sum_probs=180.6
Q ss_pred ccEEEEEecccchhhhcCChhHHHHHHhhcCCcEEEEeccccccCCC-----CCCCceEEEeccCCCcceEEEEEeecCC
Q 019834 41 PLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSP-----PFKNYQIWWSLADSKYAGTALLVKKCFQ 115 (335)
Q Consensus 41 ~lrI~swNv~~~~~~~~~~~~~l~~~i~~~~~DIv~LQEv~~~~~~~-----~~~~y~~~~~~~~~~~~Gvailsr~~l~ 115 (335)
+|||+||||+|++.+. ..++++|++.+||||||||+....... ...+|++++. +..++.|++|++|+++.
T Consensus 1 mlrv~t~Nv~g~~~~~----~~i~~~i~~~~~Dii~lQE~~~~~~~~~~~~~~~~gy~~~~~-~~~~~~G~ailsr~~~~ 75 (257)
T 2voa_A 1 MLKIATFNVNSIRSRL----HIVIPWLKENKPDILCMQETKVENRKFPEADFHRIGYHVVFS-GSKGRNGVAIASLEEPE 75 (257)
T ss_dssp CEEEEEEECSCGGGTH----HHHHHHHHHHCCSEEEEECCCCCGGGCCHHHHHTTTCEEEEE-EETTEEEEEEEESSCCE
T ss_pred CeEEEEEecCChHHHH----HHHHHHHhhcCCCEEEEEEeecchhhcCHHHhhhCCCcEEEc-CCCCccEEEEEEccChH
Confidence 4899999999987655 679999999999999999996421111 1358877665 34556799999999643
Q ss_pred CceEEeccccccccCCCCCCEEEEEeCcEEEEEEEcCCCCCCcchhhHHHHHHHHHHHHHHHHhc--CCCCEEEEccCCC
Q 019834 116 PKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC--SGKPLIWCGDLNV 193 (335)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~r~i~~~~~~~~i~~~y~~~~~~~~~~~~~~~r~~~~~~l~~~l~~~--~~~p~Il~GDFN~ 193 (335)
.+...++. ...+ .+|++.+.+..+.|+++|+|+...... .+...|.++++.|.+++++. .+.|+|||||||+
T Consensus 76 --~~~~~~~~--~~~~-~~r~l~~~~~~~~v~~~h~p~~~~~~~-~~~~~r~~~~~~l~~~~~~~~~~~~p~Il~GDFN~ 149 (257)
T 2voa_A 76 --DVSFGLDS--EPKD-EDRLIRAKIAGIDVINTYVPQGFKIDS-EKYQYKLQWLERLYHYLQKTVDFRSFAVWCGDMNV 149 (257)
T ss_dssp --EEEESCSS--SSCC-GGGEEEEEETTEEEEEEECCCCSCTTS-HHHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECSC
T ss_pred --HheecCCC--Cccc-cCcEEEEEECCEEEEEEEeCCCCCCCc-HHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeeCCC
Confidence 22233321 1123 678888888999999999998764211 34445667888888888763 5689999999999
Q ss_pred CCCcccCcCchhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHHHhccCCeeEeeecccCCCCCCceeeeeCC-CCCCc-
Q 019834 194 SHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN-PIGKY- 271 (335)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~T~~~~-~~~~~- 271 (335)
.+.+.|..++..| .+..++++.++..+..++..+ |.|+|+..+|.. ..|||++. ....+
T Consensus 150 ~~~~~d~~~~~~~---------------~~~~~~~~~~~~~~~~l~~~~-l~D~~~~~~p~~---~~~T~~~~~~~~~~~ 210 (257)
T 2voa_A 150 APEPIDVHSPDKL---------------KNHVCFHEDARRAYKKILELG-FVDVLRKIHPNE---RIYTFYDYRVKGAIE 210 (257)
T ss_dssp CCSGGGBSCGGGC---------------TTSTTTCHHHHHHHHHHHTTT-CEEHHHHHSTTC---CCCSBCCTTSTTTTT
T ss_pred CCchhhccChhHh---------------CCCCCCCHHHHHHHHHHHHcC-cEeeehhhCCCC---CCcceeccccCCcee
Confidence 9888776654322 245667777888888888654 999999888764 46999876 44333
Q ss_pred CCCcceeEEEEeChhhhcceeeeeeccCccccCCcCCCCccceEEEEec
Q 019834 272 RGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 320 (335)
Q Consensus 272 ~~~~~riD~i~~s~~~~~~~~~~~v~~~~~~~~~~~~SDH~pV~~~~~~ 320 (335)
.+.+.||||||+++++..++..+.+..... ....+|||+||.++|++
T Consensus 211 ~~~~~rID~i~~s~~~~~~~~~~~v~~~~~--~~~~~SDH~pv~~~l~~ 257 (257)
T 2voa_A 211 RGLGWRGDAILATPPLAERCVDCYADIKPR--LAEKPSDHLPLVAVFDV 257 (257)
T ss_dssp TTCCBCCEEEEECHHHHTTEEEEEECCHHH--HSSSCCSBCCEEEEECC
T ss_pred cCceEEEEEEEECHHHHhhhheeEeehhhc--cCCCCCCccCEEEEEeC
Confidence 245689999999999987788888764211 12368999999999974
No 4
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=100.00 E-value=1e-33 Score=256.36 Aligned_cols=252 Identities=31% Similarity=0.611 Sum_probs=181.7
Q ss_pred CCCCCccEEEEEecccchhhhcCChhHHHHHHhhcCCcEEEEeccccccCCC-----CCCCc-eEEEecc--CCCcceEE
Q 019834 36 NSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSP-----PFKNY-QIWWSLA--DSKYAGTA 107 (335)
Q Consensus 36 ~~~~~~lrI~swNv~~~~~~~~~~~~~l~~~i~~~~~DIv~LQEv~~~~~~~-----~~~~y-~~~~~~~--~~~~~Gva 107 (335)
......|||+||||++++...++ .++++|++.+||||||||+....... ...+| +.++... ..++.|++
T Consensus 23 ~~~~~~l~v~t~Ni~~~~~~~~~---~i~~~i~~~~~DIi~LQE~~~~~~~~~~~l~~~~gy~~~~~~~~~~~~g~~Gva 99 (285)
T 2o3h_A 23 SGKPATLKIASWNVDGLRAWIKK---KGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVG 99 (285)
T ss_dssp TSCBCCEEEEEEECSSHHHHHHT---THHHHHHHHCCSEEEEECCCCCTTSCCGGGGGCGGGCEEEEECBC--CCSCCEE
T ss_pred CCCccceEEEEEecccChhhhhh---hHHHHHHhcCCCEEEEEEeecchhhccHHHHhccCCcEEEEecccCCcccceEE
Confidence 34556899999999998766532 38999999999999999997432111 13588 5666542 23457999
Q ss_pred EEEeecCCCceEEeccccccccCCCCCCEEEEEeCcEEEEEEEcCCCCCCcchhhHHHHHHHHHHHHHHHHhc-CCCCEE
Q 019834 108 LLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLI 186 (335)
Q Consensus 108 ilsr~~l~~~~~~~~~~~~~~~~~~~~r~i~~~~~~~~i~~~y~~~~~~~~~~~~~~~r~~~~~~l~~~l~~~-~~~p~I 186 (335)
|++|++ ++.+...++. ...+..+|++.+.+..+.|+++|+|+..... .+...|.++++.|.++++.. ...|+|
T Consensus 100 ilsr~~--~~~~~~~~~~--~~~~~~~r~l~~~~~~~~v~~~h~p~~~~~~--~~~~~r~~~~~~l~~~l~~~~~~~p~I 173 (285)
T 2o3h_A 100 LLSRQC--PLKVSYGIGD--EEHDQEGRVIVAEFDSFVLVTAYVPNAGRGL--VRLEYRQRWDEAFRKFLKGLASRKPLV 173 (285)
T ss_dssp EEESSC--CSEEEESCSC--GGGSSBCCEEEEECSSCEEEEEECCCCCGGG--TTHHHHHHHHHHHHHHHHHHHTTSCEE
T ss_pred EEEccC--hHHeeeccCC--cccCCCCcEEEEEeCCEEEEEEEcCCCCCcc--hhHHHHHHHHHHHHHHHHhhccCCCEE
Confidence 999997 3333333321 1234567888888899999999998876432 34455778888888888763 458999
Q ss_pred EEccCCCCCCcccCcCchhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHH-HHHhccCCeeEeeecccCCCCCCceeeeeC
Q 019834 187 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRF-GAILKEGRLIDAYRFLHKEKDMDCGFSWSG 265 (335)
Q Consensus 187 l~GDFN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~~~~~~~~~~~~~~T~~~ 265 (335)
||||||+.+...|..++. ...+..++.+.++..+ ..++.. +|.|+|+..+|... ..|||++
T Consensus 174 l~GDFN~~~~~~D~~~~~---------------~~~~~~g~~~~~~~~~~~~~l~~-~l~D~~~~~~~~~~--~~~T~~~ 235 (285)
T 2o3h_A 174 LCGDLNVAHEEIDLRNPK---------------GNKKNAGFTPQERQGFGELLQAV-PLADSFRHLYPNTP--YAYTFWT 235 (285)
T ss_dssp EEEECSCCCSGGGBSCTT---------------TCTTSTTSCHHHHHHHHHHHHHT-TCEEHHHHHCTTCC--SCCSBCC
T ss_pred EEEECCCCCchhhccChh---------------hcCCCCCcCHHHHHHHHHHHhcC-CCEEEEEecCCCCC--CcEeEec
Confidence 999999988776654332 1124467777788888 888887 59999998887542 3599987
Q ss_pred CCCCCc-CCCcceeEEEEeChhhhcceeeeeeccCccccCCcCCCCccceEEEEec
Q 019834 266 NPIGKY-RGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 320 (335)
Q Consensus 266 ~~~~~~-~~~~~riD~i~~s~~~~~~~~~~~v~~~~~~~~~~~~SDH~pV~~~~~~ 320 (335)
.....+ .+.+.||||||+++++..++.++.+... ...|||+||+++|.+
T Consensus 236 ~~~~~~~~~~~~rID~i~~s~~~~~~v~~~~v~~~------~~~SDH~pv~~~l~l 285 (285)
T 2o3h_A 236 YMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSK------ALGSDHCPITLYLAL 285 (285)
T ss_dssp SSTTHHHHTCCBCCEEEEECGGGGGGEEEEEECTT------CCSSSBCCEEEEECC
T ss_pred CcCCccccCceeEEEEEEECHHHHhhhhheEeecc------CCCCCeecEEEEecC
Confidence 543321 2335799999999998877888888752 257999999999975
No 5
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Probab=100.00 E-value=4.1e-34 Score=263.62 Aligned_cols=251 Identities=31% Similarity=0.600 Sum_probs=179.6
Q ss_pred CCCCccEEEEEecccchhhhcCChhHHHHHHhhcCCcEEEEecccccc---CCC--CCCCc-eEEEecc--CCCcceEEE
Q 019834 37 SKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRAL---SSP--PFKNY-QIWWSLA--DSKYAGTAL 108 (335)
Q Consensus 37 ~~~~~lrI~swNv~~~~~~~~~~~~~l~~~i~~~~~DIv~LQEv~~~~---~~~--~~~~y-~~~~~~~--~~~~~Gvai 108 (335)
.....|||+||||+|++...+. .|+++|++.+||||||||+.... ... ...+| +.++... ..++.|++|
T Consensus 57 ~~~~~lrv~t~Nv~g~~~~~~~---~i~~~i~~~~~DIi~LQE~~~~~~~~~~~l~~~~gy~~~~~~~~~~~~g~~Gvai 133 (318)
T 1hd7_A 57 GKPATLKICSWNVDGLRAWIKK---KGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGL 133 (318)
T ss_dssp SCBCCEEEEEEECSSHHHHHHT---THHHHHHHHCCSEEEEECCCCCC-----------CCCEEEEECC-----CCCEEE
T ss_pred CCCCceEEEEEecCcchhhhhh---hHHHHHHhhCCCEEEEEEccCchhhccHHHHhcCCCceEEEecCCCCCccceEEE
Confidence 3556899999999998765532 38999999999999999997432 111 13588 6666532 234679999
Q ss_pred EEeecCCCceEEeccccccccCCCCCCEEEEEeCcEEEEEEEcCCCCCCcchhhHHHHHHHHHHHHHHHHhc-CCCCEEE
Q 019834 109 LVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 187 (335)
Q Consensus 109 lsr~~l~~~~~~~~~~~~~~~~~~~~r~i~~~~~~~~i~~~y~~~~~~~~~~~~~~~r~~~~~~l~~~l~~~-~~~p~Il 187 (335)
|||++ ++.+...++ ....+..+|++.+.+..+.|+++|+|+..... .+...|.+|++.|.+++... ...|+||
T Consensus 134 lsr~~--~~~~~~~~~--~~~~~~~~r~l~~~~~~~~v~~vh~p~~~~~~--~~~~~r~~~~~~l~~~l~~~~~~~pvIl 207 (318)
T 1hd7_A 134 LSRQC--PLKVSYGIG--DEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGL--VRLEYRQRWDEAFRKFLKGLASRKPLVL 207 (318)
T ss_dssp EESSC--CSEEEESCS--CGGGSSSSCEEEEECSSCEEEEEECCCCCGGG--TTHHHHHHHHHHHHHHHHHHHHHSCEEE
T ss_pred EEcCC--ceeEEecCC--CcccCCCCcEEEEEcCCEEEEEEEcCCCCCcc--ccHHHHHHHHHHHHHHHHhcccCCCEEE
Confidence 99997 333433332 11234567899999999999999999876432 34455778888888887653 2379999
Q ss_pred EccCCCCCCcccCcCchhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHH-HHHhccCCeeEeeecccCCCCCCceeeeeCC
Q 019834 188 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRF-GAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 266 (335)
Q Consensus 188 ~GDFN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~~~~~~~~~~~~~~T~~~~ 266 (335)
|||||+.+...|..++... .+..++++.++..+ ..++..+ |.|+|+..+|... ..|||++.
T Consensus 208 ~GDFN~~~~~~D~~~~~~~---------------~~~~g~~~~~~~~~~~~ll~~~-l~D~~r~~~p~~~--~~~T~~~~ 269 (318)
T 1hd7_A 208 CGDLNVAHEEIDLRNPKGN---------------KKNAGFTPQERQGFGELLQAVP-LADSFRHLYPNTP--YAYTFWTY 269 (318)
T ss_dssp EEECSCCCSGGGBSCHHHH---------------TTSTTSCHHHHHHHHHHHHHTT-CEEHHHHHCTTCT--TCCSBCCS
T ss_pred EeeCCCCChhhhccChhhc---------------CCCCCcCHHHHHHHHHHHhhCC-CEEeehhhCCCCC--CCcceECC
Confidence 9999998887766554321 24567788888888 8888874 9999998887642 35999875
Q ss_pred CCCCc-CCCcceeEEEEeChhhhcceeeeeeccCccccCCcCCCCccceEEEEec
Q 019834 267 PIGKY-RGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 320 (335)
Q Consensus 267 ~~~~~-~~~~~riD~i~~s~~~~~~~~~~~v~~~~~~~~~~~~SDH~pV~~~~~~ 320 (335)
....+ .+.+.||||||++.++...+..+.+... ...|||+||+++|.+
T Consensus 270 ~~~~~~~~~~~rID~il~s~~~~~~v~~~~v~~~------~~~SDH~Pv~~~l~l 318 (318)
T 1hd7_A 270 MMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSK------ALGSDHCPITLYLAL 318 (318)
T ss_dssp GGGHHHHTCCBCCEEEEECGGGGGGEEEEEECTT------CCSSSBCCEEEEECC
T ss_pred cCCCcccCCceEEEEEEECHHHHhhhhheEeecc------CCCCCccCEEEEecC
Confidence 43221 2345799999999999877888888742 246999999999975
No 6
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=100.00 E-value=1.8e-33 Score=250.00 Aligned_cols=248 Identities=27% Similarity=0.439 Sum_probs=181.4
Q ss_pred cEEEEEecccchhhhcCChhHHHHHHhhcCCcEEEEeccccccCCC-----CCCCceEEEeccCCCcceEEEEEeecCCC
Q 019834 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSP-----PFKNYQIWWSLADSKYAGTALLVKKCFQP 116 (335)
Q Consensus 42 lrI~swNv~~~~~~~~~~~~~l~~~i~~~~~DIv~LQEv~~~~~~~-----~~~~y~~~~~~~~~~~~Gvailsr~~l~~ 116 (335)
|||+||||++++.+. ..++++|++.+||||||||+....... ...+|++++. +..++.|++|++|+++.
T Consensus 1 lrv~t~Nv~~~~~~~----~~i~~~i~~~~~DIv~LQE~~~~~~~~~~~~~~~~gy~~~~~-~~~~~~G~ailsr~~~~- 74 (256)
T 2jc4_A 1 MKITTWNVNSLNVRL----PQVQNLLADNPPDILVLQELKLDQDKFPAAALQMMGWHCVWS-GQKTYNGVAIVSRSVPQ- 74 (256)
T ss_dssp CEEEEEECSCHHHHH----HHHHHHHHSSCCSEEEEECCCSCGGGSCHHHHHTTTCEEEEE-CCSSSCCEEEEESSCCE-
T ss_pred CEEEEEEcCCcHHHH----HHHHHHHHhcCCCEEEEEeeccchhcCCHhHHhhcCCeEEEC-CCCcceEEEEEECCChH-
Confidence 799999999988765 679999999999999999997432211 1258877765 34557899999999643
Q ss_pred ceEEeccccccccCCCCCCEEEEEeCcEEEEEEEcCCCCCCcchhhHHHHHHHHHHHHHHHHhc--CCCCEEEEccCCCC
Q 019834 117 KKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC--SGKPLIWCGDLNVS 194 (335)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~r~i~~~~~~~~i~~~y~~~~~~~~~~~~~~~r~~~~~~l~~~l~~~--~~~p~Il~GDFN~~ 194 (335)
.....++. ...+..++++.+.+..+.|+++|+|+...... .+...|..+++.|.+++++. .+.|+|||||||+.
T Consensus 75 -~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~-~~~~~r~~~~~~l~~~~~~~~~~~~~~il~GDFN~~ 150 (256)
T 2jc4_A 75 -DVHFGLPA--LPDDPQRRVIAATVSGVRVINVYCVNGEALDS-PKFKYKEQWFAALTEFVRDEMTRHGKLVLLGDFNIA 150 (256)
T ss_dssp -EEEESCTT--STTCCSCCEEEEEETTEEEEEEECCCCCSTTS-HHHHHHHHHHHHHHHHHHHHHTTCSSEEEEEECCCC
T ss_pred -HheecCCC--CccCCcCcEEEEEeCCEEEEEEEecCCCCCCc-HhHHHHHHHHHHHHHHHHHHhcCCCCEEEEeECCCC
Confidence 22223321 11235678888888999999999998874321 34555777888888888763 57899999999998
Q ss_pred CCcccCcCchhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHHHhccCCeeEeeecccCCCCCCceeeeeCCCCCCc-CC
Q 019834 195 HEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKY-RG 273 (335)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~T~~~~~~~~~-~~ 273 (335)
+.+.+..++..+ .+..++.+.+++.+..++..+ |.|+|+..+|.. +.|||++.....+ .+
T Consensus 151 ~~~~d~~~~~~~---------------~~~~~~~~~~~~~~~~l~~~~-l~D~~~~~~~~~---~~~T~~~~~~~~~~~~ 211 (256)
T 2jc4_A 151 PADADCYDPEKW---------------HEKIHCSSVERQWFQNLLDLG-LTDSLRQVHPEG---AFYTWFDYRGAMFQRK 211 (256)
T ss_dssp CSGGGBSSGGGG---------------TTCTTSCHHHHHHHHHHHTTT-CEEHHHHHCCSS---CCCCBCCTTTTHHHHT
T ss_pred CchhhccChhHh---------------CCCCCcCHHHHHHHHHHHhcC-cEEhhhhhCCCC---CceeeEcCCCCccccC
Confidence 887665544322 245677788888888888655 999999888764 4699987544322 23
Q ss_pred CcceeEEEEeChhhhcceeeeeeccCccccCCcCCCCccceEEEEec
Q 019834 274 KRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 320 (335)
Q Consensus 274 ~~~riD~i~~s~~~~~~~~~~~v~~~~~~~~~~~~SDH~pV~~~~~~ 320 (335)
.+.||||||+++++..++.++.+.... .....+|||+||+++|.+
T Consensus 212 ~~~rID~i~~s~~~~~~~~~~~v~~~~--~~~~~~SDH~pv~~~l~l 256 (256)
T 2jc4_A 212 LGLRIDHILVSPAMAAALKDVRVDLET--RALERPSDHAPVTAEFDW 256 (256)
T ss_dssp CCBCCEEEEECHHHHTTEEEEEECHHH--HTSSSCCSBCCEEEEECC
T ss_pred cEEEEEEEEECHHHHhheeEEEEEhhc--ccCCCCCCcccEEEEecC
Confidence 457999999999988778888886421 112478999999999975
No 7
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=100.00 E-value=9.4e-34 Score=252.24 Aligned_cols=249 Identities=22% Similarity=0.397 Sum_probs=180.8
Q ss_pred ccEEEEEecccchhhhcCChhHHHHHHhhcCCcEEEEeccccccCCC-----CCCCceEEEec-cCCCcceEEEEEeecC
Q 019834 41 PLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSP-----PFKNYQIWWSL-ADSKYAGTALLVKKCF 114 (335)
Q Consensus 41 ~lrI~swNv~~~~~~~~~~~~~l~~~i~~~~~DIv~LQEv~~~~~~~-----~~~~y~~~~~~-~~~~~~Gvailsr~~l 114 (335)
+|||+||||++++...++ .++++|++.+||||||||+....... ...+|.+++.. ...++.|++|++|+++
T Consensus 1 ml~v~t~Ni~~~~~~~~~---~i~~~i~~~~~DIi~LQE~~~~~~~~~~~l~~~~gy~~~~~~~~~~~~~G~ailsr~~~ 77 (259)
T 2jc5_A 1 MLKIISANVNGIRSAYKK---GFYEYIAASGADIVCVQELKAQEADLSADMKNPHGMHGHWHCAEKRGYSGVAVYSKRKP 77 (259)
T ss_dssp CEEEEEEECSSHHHHHHT---THHHHHHHTTCSEEEEECCCCCGGGCCHHHHSGGGCEEEEECCSSTTCCCEEEEESSCC
T ss_pred CcEEEEEeeccHHHHHHh---HHHHHHHhcCCCEEEEEEecchhhccChhhccccCCeEEEeccCCCCcceEEEEEecCc
Confidence 389999999998766531 49999999999999999997432111 13588877664 2345689999999974
Q ss_pred CCceEEeccccccccCCCCCCEEEEEeCcEEEEEEEcCCCCCCcchhhHHHHHHHHHHHHHHHHhc--CCCCEEEEccCC
Q 019834 115 QPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC--SGKPLIWCGDLN 192 (335)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~r~i~~~~~~~~i~~~y~~~~~~~~~~~~~~~r~~~~~~l~~~l~~~--~~~p~Il~GDFN 192 (335)
. .+...++. ...+..++++.+.+..+.|+++|+++..... .+..+|..+++.+.+.+++. .+.|+|||||||
T Consensus 78 ~--~~~~~~~~--~~~~~~~r~~~~~~~~~~v~~~h~~~~~~~~--~r~~~~~~~~~~l~~~~~~~~~~~~~~Il~GDFN 151 (259)
T 2jc5_A 78 D--NVQIGMGI--EEFDREGRFVRCDFGRLSVISLYLPSGSSAE--ERQQVKYRFLDAFYPMLEAMKNEGRDIVVCGDWN 151 (259)
T ss_dssp S--EEEESCSC--HHHHTTCCEEEEEETTEEEEEEECCCCTTCH--HHHHHHHHHHHHHHHHHHHHHHTCSEEEEEEECC
T ss_pred e--eEEeCCCC--CccCCCCeEEEEEcCCEEEEEEeccCCCCCc--HHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeeCC
Confidence 3 22222321 1123467888888999999999999887532 34445667888888888653 578999999999
Q ss_pred CCCCcccCcCchhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHHHhccCCeeEeeecccCCCCCCceeeeeCCCCCCc-
Q 019834 193 VSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKY- 271 (335)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~T~~~~~~~~~- 271 (335)
+.+...|..++. ......++.+.+...+..++...+|.|+|+..+|.. ..|||++.....+
T Consensus 152 ~~~~~~d~~~~~---------------~~~~~~~~~~~~~~~~~~~l~~~~l~d~~~~~~~~~---~~~T~~~~~~~~~~ 213 (259)
T 2jc5_A 152 IAHQNIDLKNWK---------------GNQKNSGFLPEEREWIGKVIHKLGWTDMWRTLYPDV---PGYTWWSNRGQAYA 213 (259)
T ss_dssp CCCSGGGBSCST---------------TCTTSTTSCHHHHHHHHHHHHTTCCEEHHHHHCTTC---CCCCEESCSSHHHH
T ss_pred CCCchhhccChh---------------hcCCCCCcCHHHHHHHHHHhccCCcEEeeHhhCCCC---CCccEECCcCCCcc
Confidence 998876654322 112445677777888888885566999999888754 3599987543221
Q ss_pred CCCcceeEEEEeChhhhcceeeeeeccCccccCCcCCCCccceEEEEecCC
Q 019834 272 RGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEAS 322 (335)
Q Consensus 272 ~~~~~riD~i~~s~~~~~~~~~~~v~~~~~~~~~~~~SDH~pV~~~~~~~~ 322 (335)
.+.+.||||||+++++..++.++.+... ..+|||+||.++|.+..
T Consensus 214 ~~~~~rID~i~~s~~~~~~~~~~~v~~~------~~~SDH~pv~~~l~~~~ 258 (259)
T 2jc5_A 214 KDVGWRIDYQMVTPELAAKAVSAHVYKD------EKFSDHAPLVVEYDYAA 258 (259)
T ss_dssp TTCEECCEEEEECHHHHTTEEEEEECCS------SCCSSBCCEEEEESCCC
T ss_pred CCCeeEEEEEEECHHHHhHHhheeecCC------CCCCCcccEEEEEeccc
Confidence 2345799999999998877888888742 47899999999998764
No 8
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=100.00 E-value=2e-32 Score=240.45 Aligned_cols=227 Identities=25% Similarity=0.343 Sum_probs=161.8
Q ss_pred CCCccEEEEEecccchhhhcCChhHHHHHHhhcCCcEEEEeccccc---cCCCCCCCceEEE-eccCCCcceEEEEEeec
Q 019834 38 KKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRA---LSSPPFKNYQIWW-SLADSKYAGTALLVKKC 113 (335)
Q Consensus 38 ~~~~lrI~swNv~~~~~~~~~~~~~l~~~i~~~~~DIv~LQEv~~~---~~~~~~~~y~~~~-~~~~~~~~Gvailsr~~ 113 (335)
...+|||+||||+|++...+. ..+.++|++.+||||||||+... +......+|.+++ ..+..+..|++|++|++
T Consensus 4 ~~~~lri~t~Nv~g~~~~~~~--~~~~~~i~~~~~DIv~LQE~~~~~~~~~~l~~~~y~~~~~~~~~~~~~Gvail~r~~ 81 (238)
T 1vyb_A 4 SNSHITILTLNINGLNSAIKR--HRLASWIKSQDPSVCCIQETHLTCRDTHRLKIKGWRKIYQANGKQKKAGVAILVSDK 81 (238)
T ss_dssp CCCCEEEEEEECSCCCSHHHH--HHHHHHHHHHCCSEEEEECCCCCTTSGGGCCCTTCCEEEEECCSSSSCCEEEEECTT
T ss_pred CCCcceEEEEecccCCchhhH--HHHHHHHHHcCCCEEEEecccCCCCCchhHhhCCCCeEEEccCCCCCceEEEEEeCC
Confidence 456899999999998765432 67999999999999999999632 2222345886543 43344567999999986
Q ss_pred CCCceEEeccccccccCCCCCCEEEEEe----CcEEEEEEEcCCCCCCcchhhHHHHHHHHHHHHHHHHhcCCCCEEEEc
Q 019834 114 FQPKKVSFSLEKTALKYEPDGRVILAEF----ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCG 189 (335)
Q Consensus 114 l~~~~~~~~~~~~~~~~~~~~r~i~~~~----~~~~i~~~y~~~~~~~~~~~~~~~r~~~~~~l~~~l~~~~~~p~Il~G 189 (335)
+. +.... . ..+..+|++.+.+ ..+.|+++|+|+... .++++.+.+.+.+..+.|+||||
T Consensus 82 ~~-~~~~~-~-----~~~~~~r~i~~~~~~~~~~~~v~~~y~p~~~~----------~~~~~~l~~~l~~~~~~~~Il~G 144 (238)
T 1vyb_A 82 TD-FKPTK-I-----KRDKEGHYIMVKGSIQQEELTILNIYAPNTGA----------PRFIKQVLSDLQRDLDSHTLIMG 144 (238)
T ss_dssp CC-CEEEE-E-----EECTTSSEEEEEEEETTEEEEEEEEECCSSSH----------HHHHHHHHHHTTTTCCTTEEEEE
T ss_pred CC-ccccc-e-----eEcCCCcEEEEEEEeCCCcEEEEEEecCCCCc----------HHHHHHHHHHHHhccCCCEEEEc
Confidence 42 22211 1 1234667766654 479999999998762 12455566666554568999999
Q ss_pred cCCCCCCcccCcCchhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHHHhccCCeeEeeecccCCCCCCceeeeeCCCCC
Q 019834 190 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 269 (335)
Q Consensus 190 DFN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~T~~~~~~~ 269 (335)
|||+.+..++... .++.+.+...+..++...+|.|+|+..+|.. ..|||++....
T Consensus 145 DFN~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~---~~~T~~~~~~~ 199 (238)
T 1vyb_A 145 DFNTPLSTLDRST----------------------RQKVNKDTQELNSALHQADLIDIYRTLHPKS---TEYTFFSAPHH 199 (238)
T ss_dssp ECSSCSSGGGBTT----------------------CCCCCHHHHHHHHHHHHTTEEEHHHHHCTTC---CCCSEEETTTT
T ss_pred cCCCCCCccccCC----------------------CCCCcHHHHHHHHHHhhCCCEEhhHhhCCCC---CceeEEcCCCC
Confidence 9999877654321 2334456678888886666999999888754 45999865432
Q ss_pred CcCCCcceeEEEEeChhhhcceeeeeeccCccccCCcCCCCccceEEEEe
Q 019834 270 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319 (335)
Q Consensus 270 ~~~~~~~riD~i~~s~~~~~~~~~~~v~~~~~~~~~~~~SDH~pV~~~~~ 319 (335)
.+.||||||+++++..++.++.+.. ..+|||+||.++|+
T Consensus 200 ----~~~rID~i~~s~~~~~~~~~~~v~~-------~~~SDH~pv~~~l~ 238 (238)
T 1vyb_A 200 ----TYSKIDHIVGSKALLSKCKRTEIIT-------NYLSDHSAIKLELR 238 (238)
T ss_dssp ----EEECCEEEEEEGGGGGGEEEEEEEC-------CSSSSSCEEEEEEC
T ss_pred ----cccceEEEEeCHHHHhhhhhceeec-------CCCCCcccEEEEeC
Confidence 2469999999999887788888774 26799999999984
No 9
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1
Probab=100.00 E-value=1.5e-32 Score=245.58 Aligned_cols=251 Identities=24% Similarity=0.377 Sum_probs=175.3
Q ss_pred cEEEEEecccchhhhcCChhHHHHHHhhcCCcEEEEeccccccCCCC---C--CCceEEEeccCCCcceEEEEEeecCCC
Q 019834 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPP---F--KNYQIWWSLADSKYAGTALLVKKCFQP 116 (335)
Q Consensus 42 lrI~swNv~~~~~~~~~~~~~l~~~i~~~~~DIv~LQEv~~~~~~~~---~--~~y~~~~~~~~~~~~Gvailsr~~l~~ 116 (335)
|||+||||++++.+. ..|+++|++.+||||||||+........ + .+|.+++. +..++.|++|++|+++
T Consensus 1 lrv~t~Nv~~~~~~~----~~i~~~i~~~~~Dii~LQE~~~~~~~~~~~~l~~~gy~~~~~-~~~~~~G~ailsr~~~-- 73 (268)
T 1ako_A 1 MKFVSFNINGLRARP----HQLEAIVEKHQPDVIGLQETKVHDDMFPLEEVAKLGYNVFYH-GQKGHYGVALLTKETP-- 73 (268)
T ss_dssp CEEEEEECSCGGGCH----HHHHHHHHHHCCSEEEEECCCCCGGGCCHHHHHHTTCEEEEE-EETTEEEEEEEESSCC--
T ss_pred CEEEEEehhHHHHHH----HHHHHHHHHcCCCEEEEEeccCChhhCCHhHhccCCCcEEEe-CCCCcceEEEEEecCc--
Confidence 799999999986644 7899999999999999999974322111 1 48877665 3456789999999973
Q ss_pred ceEEeccccccccCCCCCCEEEEEe----CcEEEEEEEcCCCCCCcchhhHHHHHHHHHHHHHHHHhc--CCCCEEEEcc
Q 019834 117 KKVSFSLEKTALKYEPDGRVILAEF----ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC--SGKPLIWCGD 190 (335)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~r~i~~~~----~~~~i~~~y~~~~~~~~~~~~~~~r~~~~~~l~~~l~~~--~~~p~Il~GD 190 (335)
..+...++. ......++++.+.+ ..+.|+++|+++........+...|..+++.+.+++++. .+.|+|||||
T Consensus 74 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~Il~GD 151 (268)
T 1ako_A 74 IAVRRGFPG--DDEEAQRRIIMAEIPSLLGNVTVINGYFPQGESRDHPIKFPAKAQFYQNLQNYLETELKRDNPVLIMGD 151 (268)
T ss_dssp SEEEESSTT--CCHHHHTTEEEEEEEETTEEEEEEEEECCCCCBTTCTTHHHHHHHHHHHHHHHHHHHCCTTSCEEEEEE
T ss_pred ceeeeCCCC--cccccCCCEEEEEEEcCCCeEEEEEEEecCCCCcccchhHHHHHHHHHHHHHHHHHhhhCCCCEEEEeE
Confidence 333333321 00122355665555 379999999998875433234556788899999988763 5689999999
Q ss_pred CCCCCCcccCcCch----hhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHHHhccCCeeEeeecccCCCCCCceeeeeCC
Q 019834 191 LNVSHEEIDVSHPE----FFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 266 (335)
Q Consensus 191 FN~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~T~~~~ 266 (335)
||+.+.+.+..... .|.. .+..++.+.++..+..+.+.+ |.|+|+..+|... +.|||+++
T Consensus 152 FN~~~~~~~~~~~~~~~~~w~~-------------~~~~~~~~~~~~~~~~l~~~g-l~D~~~~~~~~~~--~~~T~~~~ 215 (268)
T 1ako_A 152 MNISPTDLDIGIGEENRKRWLR-------------TGKCSFLPEEREWMDRLMSWG-LVDTFRHANPQTA--DRFSWFDY 215 (268)
T ss_dssp CCCCCSGGGBCSCHHHHHHHHH-------------HTBTTSCHHHHHHHHHHHHTT-EEEHHHHHSTTCC--SCCSBCCT
T ss_pred CCCCCchhcccCcccChhhhcc-------------CCCcCcCHHHHHHHHHHhcCC-CEEeEhhhCCCCC--CCeeEeCC
Confidence 99998876654321 0100 034566777777787777655 9999999888643 56999876
Q ss_pred CCCCc-CCCcceeEEEEeChhhhcceeeeeeccCccccCCcCCCCccceEEEEe
Q 019834 267 PIGKY-RGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 319 (335)
Q Consensus 267 ~~~~~-~~~~~riD~i~~s~~~~~~~~~~~v~~~~~~~~~~~~SDH~pV~~~~~ 319 (335)
....+ .+.+.||||||+++++...+..+.+.... .....+|||+||+++|+
T Consensus 216 ~~~~~~~~~~~riD~il~s~~~~~~~~~~~i~~~~--~~~~~~SDH~pv~~~l~ 267 (268)
T 1ako_A 216 RSKGFDDNRGLRIDLLLASQPLAECCVETGIDYEI--RSMEKPSDHAPVWATFR 267 (268)
T ss_dssp TTTHHHHTCCBCCEEEEEEHHHHTTEEEEEECHHH--HTSSSCCSBCCEEEEEC
T ss_pred cCCccccCceEEEEEEEeCHHHHHHHHhceechhh--cCCCCCCCcccEEEEcc
Confidence 44332 23457999999999988777777776421 11246899999999985
No 10
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=99.97 E-value=8.2e-31 Score=245.61 Aligned_cols=233 Identities=21% Similarity=0.259 Sum_probs=147.9
Q ss_pred ccCCCCCccEEEEEecccchhhh-cCChhHHHHHHhhcCCcEEEEeccccccC---CCCCCCceEEEeccCCCcceEEEE
Q 019834 34 EENSKKDPLKFVTWNANSLLLRV-KNNWPEFSNFITTFDPDVIALQILMRALS---SPPFKNYQIWWSLADSKYAGTALL 109 (335)
Q Consensus 34 ~~~~~~~~lrI~swNv~~~~~~~-~~~~~~l~~~i~~~~~DIv~LQEv~~~~~---~~~~~~y~~~~~~~~~~~~Gvail 109 (335)
.....+..|||+||||+|+.... +.|...|+++|++.+|||||||||..... ...+.+|.+++. +..++.|++||
T Consensus 112 ~~~~~~~~lkVlSWNI~Gl~~~~~~~R~~~I~~~I~~~~PDIV~LQEv~~~~~~~l~~~~~~y~~~~~-~~~~~~G~aIl 190 (362)
T 4gew_A 112 AEDLKGFEVSVMSWNIDGLDGRSLLTRMKAVAHIVKNVNPDILFLQEVVDRDLAPIDKLQSLYKIYYS-NKGCQYYTAIL 190 (362)
T ss_dssp -CTTTTCEEEEEEEECCTTCCTTHHHHHHHHHHHHHHHCCSEEEEEEECSTTCHHHHGGGGTEEEEES-STTSSSEEEEE
T ss_pred CCCCCCCeEEEEEEEeCCCCCcCHHHHHHHHHHHHHHcCCCEEEEEcCChhHhHHHHHhcCCceEEeC-CCCCCceEEEE
Confidence 34556779999999999874321 22336799999999999999999953211 112346655543 45567899999
Q ss_pred EeecCCCceEE-eccccccccCCCCCCEE--EEEe--CcEEEEEEEcCCCCCCcchhhHHHHHHHHHHHHHHHHh----c
Q 019834 110 VKKCFQPKKVS-FSLEKTALKYEPDGRVI--LAEF--ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ----C 180 (335)
Q Consensus 110 sr~~l~~~~~~-~~~~~~~~~~~~~~r~i--~~~~--~~~~i~~~y~~~~~~~~~~~~~~~r~~~~~~l~~~l~~----~ 180 (335)
+|+++...... ...+ .......++ .+.. ..+.|+++|+++... ....|..++..+...+.. .
T Consensus 191 sk~~i~~~~~~~~~~~----~~~~~r~~l~~~i~~~g~~l~v~ntHL~s~~~-----~~~~R~~Q~~~l~~~~~~~~~~~ 261 (362)
T 4gew_A 191 VSKMFDVEKHDVIHFQ----NSGMYRTLQILEGSIGGLKVFLLNTHLESTRE-----HRPQRCAQFGFCMDKVREIIAQN 261 (362)
T ss_dssp EETTEEEEEEEEEECT----TCSSCCEEEEEEEEETTEEEEEEEEECCCSGG-----GHHHHHHHHHHHHHHHHHHHHHC
T ss_pred EeccCccccccccCCC----CCcccceEEEEEEEECCEEEEEEEecCCcccc-----chhHHHHHHHHHHHHhHhhhhcC
Confidence 99864222211 1111 111122233 3333 369999999998763 223355555555555443 4
Q ss_pred CCCCEEEEccCCCCCCcccCcCchhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHHHhccCCeeEeeecccCCCCCCce
Q 019834 181 SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCG 260 (335)
Q Consensus 181 ~~~p~Il~GDFN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~ 260 (335)
.+.|+|||||||..+...... ..+|.|+|+.+.+... ..
T Consensus 262 ~~~pvIl~GDFN~~p~~~~~~---------------------------------------~~gl~Da~~~~~~~~~--~~ 300 (362)
T 4gew_A 262 PGALVFFGGDLNLRDEEVSRV---------------------------------------PDGVKDAWEAAGSDNK--TK 300 (362)
T ss_dssp TTCEEEEEEECCCCGGGCCCC---------------------------------------CTTCEEHHHHTTCCGG--GC
T ss_pred CCCCeEEeecCCCCCcccchh---------------------------------------cchHHHHHHHhCCCCC--CC
Confidence 678999999999866543211 1248999998876543 67
Q ss_pred eeeeCCCCCCcC---CCcceeEEEEeChhhhcceeeeeeccC-ccccCCcCCCCccceEEEEe
Q 019834 261 FSWSGNPIGKYR---GKRMRIDYFIVSEELKDRIIACEMQGH-GIELEGFYGSDHCPVSLELS 319 (335)
Q Consensus 261 ~T~~~~~~~~~~---~~~~riD~i~~s~~~~~~~~~~~v~~~-~~~~~~~~~SDH~pV~~~~~ 319 (335)
|||+...+.... ..+.||||||+++.+. +..+.+... .....+.++|||+||+++|+
T Consensus 301 ~Tw~~~~n~~~~~~~~~~~RIDyIf~s~~l~--~~~~~vi~~~ri~~~~~~pSDH~pV~A~FS 361 (362)
T 4gew_A 301 FTWDTFKNDNKQGFHGAKMRFDRLYWSGPLD--KVKFTLEGRQRIRSCLCFPSDHWAINATFF 361 (362)
T ss_dssp CSEETTTCTTSCCSSCCEECCEEEEEESSCC--EEEEEEECCSCCTTTSSCSCSSCEEEEEEE
T ss_pred cCcccccCcccccCCCCCcceEEEEEcCCcc--eeEEEEEeeeecCCCCCCCCcccCEEEEEc
Confidence 999876554332 2357999999998864 344444321 11123457899999999996
No 11
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=99.96 E-value=2.1e-29 Score=222.91 Aligned_cols=232 Identities=19% Similarity=0.262 Sum_probs=142.0
Q ss_pred CCCCCccEEEEEecccchhhh-cCChhHHHHHHhhcCCcEEEEeccccccCCC--CCCCceEEEeccCCCcceEEEEEee
Q 019834 36 NSKKDPLKFVTWNANSLLLRV-KNNWPEFSNFITTFDPDVIALQILMRALSSP--PFKNYQIWWSLADSKYAGTALLVKK 112 (335)
Q Consensus 36 ~~~~~~lrI~swNv~~~~~~~-~~~~~~l~~~i~~~~~DIv~LQEv~~~~~~~--~~~~y~~~~~~~~~~~~Gvailsr~ 112 (335)
..++.+|||+||||+|+.... ..+...|+++|++.+||||||||+....... ...++..++.....+..|++|+++.
T Consensus 8 ~~~~~~l~v~s~Ni~g~~~~~~~~r~~~i~~~i~~~~pDIi~LQEv~~~~~~~l~~~~~~~~~~~~~~~~~~g~~il~~~ 87 (256)
T 4fva_A 8 DLKGFEVSVMSWNIDGLDGRSLLTRMKAVAHIVKNVNPDILFLQEVVDRDLAPIDKLQSLYKIYYSNKGCQYYTAILVSK 87 (256)
T ss_dssp CCTTCEEEEEEEECCTTCCTTHHHHHHHHHHHHHHHCCSEEEEEEECSTTCHHHHGGGGTEEEEESSTTSSSEEEEEEET
T ss_pred cCCCCEEEEEEEecCCCCCcCHHHHHHHHHHHHHHcCCCEEEEEecChhHhHHHHHhcCCceEeecCCCCCcceEEEEee
Confidence 356679999999999874321 2233679999999999999999996322110 1123334444455567799999998
Q ss_pred cCCCceE-EeccccccccCCCCCCEEE--EEe--CcEEEEEEEcCCCCCCcchhhHHHHHHHHHHHHH----HHHhcCCC
Q 019834 113 CFQPKKV-SFSLEKTALKYEPDGRVIL--AEF--ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQE----FVLQCSGK 183 (335)
Q Consensus 113 ~l~~~~~-~~~~~~~~~~~~~~~r~i~--~~~--~~~~i~~~y~~~~~~~~~~~~~~~r~~~~~~l~~----~l~~~~~~ 183 (335)
++..... ...++ ........+. +.. ..+.|+++|+++..... ..+..++..+.+ ......+.
T Consensus 88 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~v~~~Hl~~~~~~~-----~~~~~q~~~~~~~~~~~~~~~~~~ 158 (256)
T 4fva_A 88 MFDVEKHDVIHFQ----NSGMYRTLQILEGSIGGLKVFLLNTHLESTREHR-----PQRCAQFGFCMDKVREIIAQNPGA 158 (256)
T ss_dssp TCEEEEEEEEECT----TCSSCCEEEEEEEEETTEEEEEEEEECCCSGGGH-----HHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred cccceecccccCC----CCcccceeEEEEEEeCCeEEEEEEecCCCCCcch-----HHHHHHHHHHHHHhhhhhhccCCC
Confidence 6432221 11111 1111222332 233 36999999998876322 223333333333 33335678
Q ss_pred CEEEEccCCCCCCcccCcCchhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHHHhccCCeeEeeecccCCCCCCceeee
Q 019834 184 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSW 263 (335)
Q Consensus 184 p~Il~GDFN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~T~ 263 (335)
|+|+|||||..+...... ..+|.|+|+...+... ..+||
T Consensus 159 ~vIl~GDfN~~~~~~~~~---------------------------------------~~~~~d~~~~~~~~~~--~~~T~ 197 (256)
T 4fva_A 159 LVFFGGDLNLRDEEVSRV---------------------------------------PDGVKDAWEAAGSDNK--TKFTW 197 (256)
T ss_dssp EEEEEEECCCCGGGCCCC---------------------------------------CTTCEEHHHHTTCCGG--GCCSE
T ss_pred cEEEeccCCCCcchhhhh---------------------------------------hcchhhHHHHhCCCCC--CCccc
Confidence 999999999865442211 1238899888776543 67899
Q ss_pred eCCCCCCc---CCCcceeEEEEeChhhhcceeeeeeccC-ccccCCcCCCCccceEEEEe
Q 019834 264 SGNPIGKY---RGKRMRIDYFIVSEELKDRIIACEMQGH-GIELEGFYGSDHCPVSLELS 319 (335)
Q Consensus 264 ~~~~~~~~---~~~~~riD~i~~s~~~~~~~~~~~v~~~-~~~~~~~~~SDH~pV~~~~~ 319 (335)
+...+... .....||||||+++.+. +..+.+... .....+.++|||+||.++|+
T Consensus 198 ~~~~~~~~~~~~~~~~RiD~I~~~~~~~--~~~~~~~~~~~~~~~~~~~SDH~pv~a~Fs 255 (256)
T 4fva_A 198 DTFKNDNKQGFHGAKMRFDRLYWSGPLD--KVKFTLEGRQRIRSCLCFPSDHWAINATFF 255 (256)
T ss_dssp ETTTCCSSCSCCSCEECCEEEEEESSCC--EEEEEEECCSCCTTTCSCSCSSCEEEEEEE
T ss_pred ccccCcccccCCCCCcCeEEEEEcCCce--eeEEEEEeeEecCCCCCCcCcccCEEEEEc
Confidence 76544332 22357999999998864 344444321 11122457899999999996
No 12
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=99.96 E-value=3.5e-29 Score=221.57 Aligned_cols=216 Identities=12% Similarity=0.059 Sum_probs=139.7
Q ss_pred CccEEEEEecccchhhhcCChhHHHHHHhhcCCcEEEEeccccccCCCCCCCceEEEeccCCCcceEEEEEeecCCCceE
Q 019834 40 DPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKV 119 (335)
Q Consensus 40 ~~lrI~swNv~~~~~~~~~~~~~l~~~i~~~~~DIv~LQEv~~~~~~~~~~~y~~~~~~~~~~~~Gvailsr~~l~~~~~ 119 (335)
..|||+||||+|++.+. ..+.++|++.+||||||||++. ..+|+ +. ..++.|+||+++.+..++..
T Consensus 6 ~~mki~s~Nvn~~r~~~----~~l~~~l~~~~~DIl~LQEt~~------~~gy~--~~--~~~~~gvail~~~~~~~~~~ 71 (240)
T 2ei9_A 6 PRLRIGQINLGGAEDAT----RELPSIARDLGLDIVLVQEQYS------MVGFL--AQ--CGAHPKAGVYIRNRVLPCAV 71 (240)
T ss_dssp CEEEEEEEECTTCHHHH----HTHHHHHHHHTCSEEEEESCCT------TSSSE--EC--CSSSCSEEEEESSTTSCEEE
T ss_pred ccceEEEEecCccHHHH----HHHHHHHHHcCCCEEEeecceE------cCCce--Ee--ccCCCCEEEEEecCCcceee
Confidence 35999999999999877 5699999999999999999963 23776 32 23478999999975333322
Q ss_pred EeccccccccCCCCCCEEEEEeCcEEEEEEEcCCCCCCcchhhHHHHHHHHHHHHHHHHhcCCCCEEEEccCCCCCCccc
Q 019834 120 SFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEID 199 (335)
Q Consensus 120 ~~~~~~~~~~~~~~~r~i~~~~~~~~i~~~y~~~~~~~~~~~~~~~r~~~~~~l~~~l~~~~~~p~Il~GDFN~~~~~~~ 199 (335)
...+ ....++++.++...++|+|+|+|++... .++..+++.+...+ ...++|||||||+.+..++
T Consensus 72 ~~~~------~~~~~~~i~i~~~~i~i~svY~P~~~~~------~~~~~~l~~l~~~~---~~~~~Ii~GDfN~~~~~w~ 136 (240)
T 2ei9_A 72 LHHL------SSTHITVVHIGGWDLYMVSAYFQYSDPI------DPYLHRLGNILDRL---RGARVVICADTNAHSPLWH 136 (240)
T ss_dssp CGGG------CCSSEEEEEETTTTEEEEEEECCTTSCS------HHHHHHHHHHHHHT---TTSCEEEEEECCCCCGGGT
T ss_pred eccc------CCCCEEEEEEeeccEEEEEEEcCCCCch------hHHHHHHHHHHHhc---CCCcEEEEEeccccccccc
Confidence 1111 1233456666667899999999998742 23556666665433 3479999999999875432
Q ss_pred CcCchhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHHHhccCCeeEeee--cccCCCCCCceeeeeCCCCCCcCCCcce
Q 019834 200 VSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR--FLHKEKDMDCGFSWSGNPIGKYRGKRMR 277 (335)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~--~~~~~~~~~~~~T~~~~~~~~~~~~~~r 277 (335)
+.. ...++.+.++......+. +|.|.++ .+++.. ..|||+++.. ++|
T Consensus 137 ---~~~-----------------~~~~~~~~~r~~~~~~l~--~~~d~~~l~~~~~~~---~~~T~~s~~~------~~r 185 (240)
T 2ei9_A 137 ---SLP-----------------RHYVGRGQEVADRRAKME--DFIGARRLVVHNADG---HLPTFSTANG------ESY 185 (240)
T ss_dssp ---CCH-----------------HHHSSSCHHHHHHHHHHH--HHHHHTTCEECCCTT---CCCSEEETTE------EEC
T ss_pred ---CCC-----------------CCCCCcchhhHHHHHHHH--HHHHhcCCEecCCCC---CCceEeCCCC------ceE
Confidence 110 000222222222222232 2555555 334422 3599997432 479
Q ss_pred eEEEEeChhhhcceeeeeeccCccccCCcCCCCccceEEEEecCCCc
Q 019834 278 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEASSD 324 (335)
Q Consensus 278 iD~i~~s~~~~~~~~~~~v~~~~~~~~~~~~SDH~pV~~~~~~~~~~ 324 (335)
|||+|+|+.+.. ..+.+.. ..+|||+||.++|+...++
T Consensus 186 ID~~l~s~~l~~--~~~~i~~-------~~~SDH~Pv~~~l~~~~~~ 223 (240)
T 2ei9_A 186 VDVTLSTRGVRV--SEWRVTN-------ESSSDHRLIVFGVGGGTTG 223 (240)
T ss_dssp CEEEEECTTCCE--EEEEECS-------CCSSSBCCEEEEEEC----
T ss_pred EEEEEecCcccc--CCeEECC-------CCCCCcccEEEEECCCCCC
Confidence 999999999875 4555542 3689999999999876543
No 13
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=99.96 E-value=5.9e-28 Score=213.93 Aligned_cols=222 Identities=16% Similarity=0.118 Sum_probs=140.4
Q ss_pred CCccEEEEEecccchhhhcCChhHHHHHHhhcCCcEEEEeccccccCCC--CCCCceEEEecc-CCCcceEEEEEeecCC
Q 019834 39 KDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQILMRALSSP--PFKNYQIWWSLA-DSKYAGTALLVKKCFQ 115 (335)
Q Consensus 39 ~~~lrI~swNv~~~~~~~~~~~~~l~~~i~~~~~DIv~LQEv~~~~~~~--~~~~y~~~~~~~-~~~~~Gvailsr~~l~ 115 (335)
...|||+||||++++.+. ..++++|++.+||||||||+....... ...+|.++.... ..++.|+||+++..
T Consensus 17 ~~~lri~s~Nv~~~~~~~----~~l~~~i~~~~~DIv~lQE~~~~~~~~~~~~~gy~~~~~~~~~~~~~GvaIl~~~~-- 90 (245)
T 1wdu_A 17 GPPYRVLQANLQRKKLAT----AELAIEAATRKAAIALIQEPYVGGAKSMKGFRGVRVFQSTAQGDGTVKAAIAVFDH-- 90 (245)
T ss_dssp -CCEEEEEEECTTCHHHH----HHHHHHHHHHTCSEEEEESCCC------CCCSSCEEEECCCCTTCCCCEEEEECCS--
T ss_pred CcceeeeeeeccccHHHH----HHHHHHHhhcCCCEEEEEcccccCCccccCCCcceEeccccccCCCCCeEEEEECC--
Confidence 457999999999987755 679999999999999999997432211 135786655422 22367999999652
Q ss_pred CceEEeccccccccCCCCCC-EEEEEe--CcEEEEEEEcCCCCCCcchhhHHHHHHHHHHHHHHHHhcCCCCEEEEccCC
Q 019834 116 PKKVSFSLEKTALKYEPDGR-VILAEF--ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLN 192 (335)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~r-~i~~~~--~~~~i~~~y~~~~~~~~~~~~~~~r~~~~~~l~~~l~~~~~~p~Il~GDFN 192 (335)
++.+. ..+ .....+. .+.+.. ..+.|+++|+|+... +..+++.+..++......|+|||||||
T Consensus 91 ~~~~~-~~~----~~~~~~~~~~~i~~~~~~~~v~~vy~p~~~~---------~~~~~~~l~~~~~~~~~~~~Ii~GDfN 156 (245)
T 1wdu_A 91 DLDVI-QYP----QLTTNNIVVVGIRTRAWEITLVSYYFEPDKP---------IESYLEQIKRVERKMGPKRLIFGGDAN 156 (245)
T ss_dssp SCEEE-ECT----TTCCSSEEEEEEECSSCEEEEEEEECCTTSC---------SHHHHHHHHHHHHTTCSSSEEEEEECC
T ss_pred CcceE-Eec----ccccCCEEEEEEEcCCCcEEEEEEEeCCCCC---------HHHHHHHHHHHHHHhCCCcEEEEeccc
Confidence 22221 111 1111221 123332 479999999998763 123444555555544568999999999
Q ss_pred CCCCcccCcCchhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHHHhccCCeeEeeecccCCCCCCceeeeeCCCCCCcC
Q 019834 193 VSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYR 272 (335)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~T~~~~~~~~~~ 272 (335)
+.+..++.. ....+...+..++...+|. ..++. ..+||+++..+ .
T Consensus 157 ~~~~~~~~~-------------------------~~~~~~~~l~~~~~~~~l~----~~~~~----~~~T~~~~~~~--~ 201 (245)
T 1wdu_A 157 AKSTWWGSK-------------------------EDDARGDQLMGTLGELGLH----ILNEG----DVPTFDTIRGG--K 201 (245)
T ss_dssp CCCGGGTCS-------------------------SCCHHHHHHHHHHHHHTCE----ECCCS----CCCSEEC-------
T ss_pred cCcccCCCC-------------------------CcCcchHHHHHHHHHCCcE----EecCC----CCCcEECCCCC--C
Confidence 977543211 0123445566665544343 23332 35899875432 1
Q ss_pred CCcceeEEEEeChhhhcceeeeeeccCccccCCcCCCCccceEEEEecC
Q 019834 273 GKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEA 321 (335)
Q Consensus 273 ~~~~riD~i~~s~~~~~~~~~~~v~~~~~~~~~~~~SDH~pV~~~~~~~ 321 (335)
..+.||||||++..+..++.++.+.. ...+|||+||.++|.++
T Consensus 202 ~~~~rID~i~~s~~~~~~v~~~~v~~------~~~~SDH~Pv~~~l~l~ 244 (245)
T 1wdu_A 202 RYQSRVDVTFCTEDMLDLIDGWRVDE------DLVSSDHNGMVFNIRLQ 244 (245)
T ss_dssp CCEECCEEEEECGGGBTTEEEEEECT------TSSSSSBCCEEEEECCC
T ss_pred CCCCEEEEEEeChHHHhhccceEEcC------CCCCCCcccEEEEEEeC
Confidence 23589999999999877788888874 24789999999999874
No 14
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=99.95 E-value=2e-28 Score=216.46 Aligned_cols=236 Identities=19% Similarity=0.235 Sum_probs=137.8
Q ss_pred CCCccEEEEEecccchhhh-cCChhHHHHHHhhcCCcEEEEeccccccCC---CCCCCceEEEeccCCCcceEEEEEeec
Q 019834 38 KKDPLKFVTWNANSLLLRV-KNNWPEFSNFITTFDPDVIALQILMRALSS---PPFKNYQIWWSLADSKYAGTALLVKKC 113 (335)
Q Consensus 38 ~~~~lrI~swNv~~~~~~~-~~~~~~l~~~i~~~~~DIv~LQEv~~~~~~---~~~~~y~~~~~~~~~~~~Gvailsr~~ 113 (335)
...+|||+||||+|+.... ..+...|+++|++.+||||||||+...... ..+..|.+. . ......|.+++++.+
T Consensus 6 ~~~~l~v~swNi~g~~~~~~~~r~~~i~~~i~~~~pDIi~LQEv~~~~~~~l~~~~~~~~~~-~-~~~~~~~~~~l~~~~ 83 (256)
T 4gz1_A 6 DSSTISFITWNIDGLDGCNLPERARGVCSCLALYSPDVVFLQEVIPPYCAYLKKRAASYTII-T-GNEEGYFTAILLKKG 83 (256)
T ss_dssp GGGEEEEEEEECCTTCCTTHHHHHHHHHHHHHHHCCSEEEEEEECHHHHHHHHHHCTTEEEE-E-SCSSSSEEEEEEETT
T ss_pred CCCcEEEEEEEcCCCcCcCHHHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHhhcccccee-e-ccccCCceEEEEEec
Confidence 3458999999999875321 223367999999999999999999632211 112233332 2 233344556666654
Q ss_pred CCCceEEeccccccccCCCCCCEEEEE--e--CcEEEEEEEcCCCCCCcchhhHHHHHHHHHHHHHHHHhc-CCCCEEEE
Q 019834 114 FQPKKVSFSLEKTALKYEPDGRVILAE--F--ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 188 (335)
Q Consensus 114 l~~~~~~~~~~~~~~~~~~~~r~i~~~--~--~~~~i~~~y~~~~~~~~~~~~~~~r~~~~~~l~~~l~~~-~~~p~Il~ 188 (335)
..... ...... ..........+.+. . ..+.|+++|+++... ....|..++..+.+.+++. .+.|+|+|
T Consensus 84 ~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~-----~~~~~~~q~~~~~~~l~~~~~~~pvIl~ 156 (256)
T 4gz1_A 84 RVKFK-SQEIIP-FPNTKMMRNLLCVNVSLGGNEFCLMTSHLESTRE-----HSAERIRQLKTVLGKMQEAPDSTTVIFA 156 (256)
T ss_dssp TEEEE-EEEEEE-CTTCSSCCEEEEEEEEETTEEEEEEECBCCCSGG-----GHHHHHHHHHHHHHHHHHSCTTSEEEEE
T ss_pred cccce-eccccc-CCcccccceEEEEEEEeCCEEEEEEeeccccccc-----chhhhhHHHHHHhhhhhhccCcceEEEe
Confidence 21111 111110 01111112223222 2 369999999988653 2334667788888888764 56899999
Q ss_pred ccCCCCCCcccCcCchhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHHHhccCCeeEeeecccCCCCCCceeeeeCCCC
Q 019834 189 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI 268 (335)
Q Consensus 189 GDFN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~T~~~~~~ 268 (335)
||||+.+.+... .. ....++.|+|+....... ..++|....+
T Consensus 157 GDfN~~~~~~~~-----------------------------------~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 198 (256)
T 4gz1_A 157 GDTNLRDQEVIK-----------------------------------CG-GLPDNVFDAWEFLGKPKH--CQYTWDTKAN 198 (256)
T ss_dssp EECCCCHHHHHH-----------------------------------HT-CSCTTEEEHHHHTTCCGG--GSCSEETTTC
T ss_pred CccCCCcchhhh-----------------------------------hh-hccchhhhHHHHhcCCCC--CCcccccCCC
Confidence 999985433211 11 122337888887765443 4566655433
Q ss_pred CCc---CCCcceeEEEEeChhhh-cceeeeeeccCccccCCcCCCCccceEEEEec
Q 019834 269 GKY---RGKRMRIDYFIVSEELK-DRIIACEMQGHGIELEGFYGSDHCPVSLELSE 320 (335)
Q Consensus 269 ~~~---~~~~~riD~i~~s~~~~-~~~~~~~v~~~~~~~~~~~~SDH~pV~~~~~~ 320 (335)
... ...+.||||||++.... .....+.+........+.++|||+||+++|++
T Consensus 199 ~~~~~~~~~~~riD~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~pv~a~~~i 254 (256)
T 4gz1_A 199 NNLRIPAAYKHRFDRIFFRAEEGHLIPQSLDLVGLEKLDCGRFPSDHWGLLCTLNV 254 (256)
T ss_dssp CTTCCSSCCEECCEEEEEECC-CSEEEEEEEEECCSCCTTSSCSCSBCEEEEEEEE
T ss_pred CccccCCCCCccEEEEEEECCccceeeeEEEEEeccccCCCCCCCccccEEEEEEE
Confidence 221 23468999999987643 23344444332111224578999999999986
No 15
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=99.95 E-value=1.2e-27 Score=209.36 Aligned_cols=234 Identities=17% Similarity=0.241 Sum_probs=138.3
Q ss_pred CccEEEEEecccchhhh-cCChhHHHHHHhhcCCcEEEEeccccccCCC--CCCCceEEEeccCCCcceEEEEEeecCCC
Q 019834 40 DPLKFVTWNANSLLLRV-KNNWPEFSNFITTFDPDVIALQILMRALSSP--PFKNYQIWWSLADSKYAGTALLVKKCFQP 116 (335)
Q Consensus 40 ~~lrI~swNv~~~~~~~-~~~~~~l~~~i~~~~~DIv~LQEv~~~~~~~--~~~~y~~~~~~~~~~~~Gvailsr~~l~~ 116 (335)
.+|||+||||+|+.... ..+...|+++|++.+|||||||||....... ...++..++........|.+++++..+..
T Consensus 2 ~~l~v~t~Ni~g~~~~~~~~r~~~i~~~i~~~~pDIi~LQEv~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (250)
T 4f1h_A 2 SKLSIISWNVDGLDTLNLADRARGLCSYLALYTPDVVFLQELIPAYVQYLKKRAVSYLFFEGSDDGYFTGIMLRKSRVKF 81 (250)
T ss_dssp CCEEEEEEECCTTCCTTHHHHHHHHHHHHHHHCCSEEEEEEECHHHHHHHHHHCTTEEEEESCSSSSEEEEEEETTTCEE
T ss_pred CeEEEEEEEeCCCCCcCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhccCceeecccccccCceeEEeeccccc
Confidence 47999999999874321 2233679999999999999999996332111 01133334443444456666666654322
Q ss_pred ceE-EeccccccccCCCCCCEEEEEe----CcEEEEEEEcCCCCCCcchhhHHHHHHHHHHHHHHHHhc-CCCCEEEEcc
Q 019834 117 KKV-SFSLEKTALKYEPDGRVILAEF----ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGD 190 (335)
Q Consensus 117 ~~~-~~~~~~~~~~~~~~~r~i~~~~----~~~~i~~~y~~~~~~~~~~~~~~~r~~~~~~l~~~l~~~-~~~p~Il~GD 190 (335)
... .+..+ .......++.+.. ..+.++++|+++... ....|..++..+.+.+++. ...|+|||||
T Consensus 82 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~hl~~~~~-----~~~~r~~q~~~~~~~l~~~~~~~pvIl~GD 152 (250)
T 4f1h_A 82 LESEIICFP----TTQMMRNLLIAQVTFSGQKLYLMTSHLESCKN-----QSQERTKQLRVVLQKIKEAPEDAIVIFAGD 152 (250)
T ss_dssp EEEEEEECT----TCSSCCEEEEEEEEETTEEEEEEECBCCCSGG-----GHHHHHHHHHHHHHHHHHSCTTEEEEEEEE
T ss_pred eeccccccc----CccccceEEEEEEecCCcEEEEeccccccccc-----cHHHHHHHHHHHHHHHHhcCCCCCEEEEEe
Confidence 221 11111 1111122232222 368999999987663 2334777888888888764 5579999999
Q ss_pred CCCCCCcccCcCchhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHHHhccCCeeEeeecccCCCCCCceeeeeCCCCCC
Q 019834 191 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGK 270 (335)
Q Consensus 191 FN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~T~~~~~~~~ 270 (335)
||+.+.+.+... .....+.|+|+.+.+... ..++|....+..
T Consensus 153 fN~~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 194 (250)
T 4f1h_A 153 TNLRDAEVANVG------------------------------------GLPAGVCDVWEQLGKQEH--CRYTWDTKANSN 194 (250)
T ss_dssp CCCCHHHHHTTT------------------------------------SSCTTEEEHHHHTTCCGG--GCCSEETTTCCS
T ss_pred cCCCCcchhhhh------------------------------------hccccchHHHHHhcCCcc--CCcccccccCCC
Confidence 998654432211 112337777777766543 456665433221
Q ss_pred --c-CCCcceeEEEEeChhhhcc---eeeeeeccCccccCCcCCCCccceEEEEec
Q 019834 271 --Y-RGKRMRIDYFIVSEELKDR---IIACEMQGHGIELEGFYGSDHCPVSLELSE 320 (335)
Q Consensus 271 --~-~~~~~riD~i~~s~~~~~~---~~~~~v~~~~~~~~~~~~SDH~pV~~~~~~ 320 (335)
. ...+.||||||+++..... +..+.+..........++|||+||+++|+.
T Consensus 195 ~~~~~~~~~riD~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~pv~a~f~T 250 (250)
T 4f1h_A 195 KTVPYVSRCRFDRIFLRSAKTAPPVTPDHMALIGMEKLDCGRYTSDHWGIYCTFNT 250 (250)
T ss_dssp SCCSSCCEECCEEEEEECCTTSCCCEEEEEEEECCSCCTTSSCSCSBCEEEEEEEC
T ss_pred CCcCCCCCccEEEEEEeCcccccceeeeEEEEecccccCCCCCCCcccCEEEEEeC
Confidence 1 2345799999998865532 233333322111234578999999999973
No 16
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}
Probab=99.95 E-value=7.5e-27 Score=208.34 Aligned_cols=233 Identities=18% Similarity=0.205 Sum_probs=143.2
Q ss_pred CCccEEEEEecccchhh-hcCChhHHHHHHhhcCCcEEEEecccccc----------------------CCCCCCCceEE
Q 019834 39 KDPLKFVTWNANSLLLR-VKNNWPEFSNFITTFDPDVIALQILMRAL----------------------SSPPFKNYQIW 95 (335)
Q Consensus 39 ~~~lrI~swNv~~~~~~-~~~~~~~l~~~i~~~~~DIv~LQEv~~~~----------------------~~~~~~~y~~~ 95 (335)
+++|||+||||++.... .+.+...|+++|++.+||||||||+.... ......+|.++
T Consensus 1 s~~l~v~t~Ni~~~~~~~~~~~~~~i~~~i~~~~~DIi~LQEv~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~y~~~ 80 (266)
T 3teb_A 1 SNAMKILTVNVHAWLEENQMEKIDILARTIAEKQYDVIAMQEVNQLMNNKIIFDDIREENYAWVLLETLQKYTDTDYYLH 80 (266)
T ss_dssp --CEEEEEEECCTTCSTTHHHHHHHHHHHHHHHTCSEEEEEEEEEETTSCEEETTEETTCHHHHHHHHHTTTCCSCCEEE
T ss_pred CCceEEEEEecccccCcchhHHHHHHHHHHHhcCCCEEEEEEccccccccccccccccccHHHHHHHHHHHhCCCCeEEE
Confidence 35799999999765321 12234778999999999999999995221 11111247665
Q ss_pred Eec---c-CCCcceEEEEEeecCCCceEEeccccccccCC-CCCCEEEEEe----CcEEEEEEEcCCCCCCcchhhHHHH
Q 019834 96 WSL---A-DSKYAGTALLVKKCFQPKKVSFSLEKTALKYE-PDGRVILAEF----ETFYLLNTYAPNNGWKEEENSFQRR 166 (335)
Q Consensus 96 ~~~---~-~~~~~Gvailsr~~l~~~~~~~~~~~~~~~~~-~~~r~i~~~~----~~~~i~~~y~~~~~~~~~~~~~~~r 166 (335)
+.. + ..+..|++|++|+++... ..+.++....... ..++++.+.+ ..+.|+++|+++...... .|
T Consensus 81 ~~~~~~~~~~~~~g~ailsr~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~v~~~Hl~~~~~~~~-----~r 154 (266)
T 3teb_A 81 WSNSHIGFGKYNEGVAVITRHKIKAE-DEFYCTFAQSVRTISARRIVSITINYEGQDIEFYSCHMNLPNCETE-----DM 154 (266)
T ss_dssp EEEEEECSTTEEEEEEEEESSCCSEE-EEEECSSCCCTTCTTCCEEEEEEEEETTEEEEEEEEECCCTTCTTC-----CH
T ss_pred EeccccCccccCCeEEEEECceecCc-eeEEeCCCCCCCCcccceEEEEEEEeCCeEEEEEEecCCCccCChH-----HH
Confidence 332 2 223569999999874222 2333332111111 1233444444 479999999988743221 25
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEccCCCCCCcccCcCchhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHHHhccCCeeE
Q 019834 167 RKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLID 246 (335)
Q Consensus 167 ~~~~~~l~~~l~~~~~~p~Il~GDFN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D 246 (335)
..+++.+.+.+.+ ..|+|||||||+.+... ...+..++..+ |.|
T Consensus 155 ~~q~~~l~~~~~~--~~~~il~GDfN~~~~~~---------------------------------~~~~~~l~~~~-l~d 198 (266)
T 3teb_A 155 GKNIQTILNRTQN--SNLKILMGDFNTDAIGN---------------------------------VAAYENILSQG-LFD 198 (266)
T ss_dssp HHHHHHHHTSSCS--CCEEEEEEECCCCTTTC---------------------------------HHHHHHHHTTT-CEE
T ss_pred HHHHHHHHHHHhc--CCcEEEEeECCCCCCCC---------------------------------CcHHHhhcccc-ccc
Confidence 5667777666643 68999999999866210 12334445545 999
Q ss_pred eeecccCCCCCCceeeeeCCCCCCc-CCCcceeEEEEeChhhhcceeeeeeccCccccCCcCCCCccceEEEEec
Q 019834 247 AYRFLHKEKDMDCGFSWSGNPIGKY-RGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 320 (335)
Q Consensus 247 ~~~~~~~~~~~~~~~T~~~~~~~~~-~~~~~riD~i~~s~~~~~~~~~~~v~~~~~~~~~~~~SDH~pV~~~~~~ 320 (335)
+|+...+.. .++||.....+.. ...+.||||||+++++. +..+.+..... .+..+|||+||.++|++
T Consensus 199 ~~~~~~~~~---~~~t~~~~~~~~~~~~~~~riD~i~~s~~~~--~~~~~v~~~~~--~~~~~SDH~Pv~~~l~l 266 (266)
T 3teb_A 199 TYVMAEKKD---DGITVDKSIHGWDNDKAKKRLDYIFSNKELK--VKESKVIFNNK--NKEIVSDHFGIEVKIEF 266 (266)
T ss_dssp HHHHCSEEC---CCCCEECC------CTTEECCEEEEESSCCC--EEEEEEESSSS--SSCCCSSSCEEEEEECC
T ss_pred hHHhhcccc---CCccccCccCCcCcCCcCCeeEEEEeCCCeE--EEEEEEEeCCC--CCCCcCCccCEEEEEEC
Confidence 999887654 4577743322221 23458999999999775 67777765422 23478999999999975
No 17
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=99.93 E-value=1.7e-25 Score=200.23 Aligned_cols=235 Identities=17% Similarity=0.199 Sum_probs=143.4
Q ss_pred CccEEEEEecccchhh-----hcCChhHHHHHHhhcCCcEEEEeccccccC---CCCCCCceEEEeccCC---CcceEEE
Q 019834 40 DPLKFVTWNANSLLLR-----VKNNWPEFSNFITTFDPDVIALQILMRALS---SPPFKNYQIWWSLADS---KYAGTAL 108 (335)
Q Consensus 40 ~~lrI~swNv~~~~~~-----~~~~~~~l~~~i~~~~~DIv~LQEv~~~~~---~~~~~~y~~~~~~~~~---~~~Gvai 108 (335)
++|||+||||++.... ...+...++++|++.+||||||||+..... ...+.+|.++...... ...+++|
T Consensus 2 ~~l~v~t~Ni~~~~~~~~~~~~~~r~~~i~~~i~~~~~DIv~LQEv~~~~~~~l~~~l~~y~~~~~~~~~~~~~g~~~ai 81 (267)
T 3g6s_A 2 TDVRWATFNIRYDNPQDSLNNWQYRKDRVCQFIKDHELDIVGMQEVLHNQFQDLRAGLPEYDGIGVGRDDGKTAGEYAPL 81 (267)
T ss_dssp EEEEEEEEECCCCCGGGGGGSGGGTHHHHHHHHHHTTCSEEEEESBCHHHHHHHHHHCTTEEEECCCTTTSSSSSCBCCE
T ss_pred CcEEEEEEEeccCCCCccccCHHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHhccCCcEEEecCCCCCcCCceeEE
Confidence 4799999999876531 123457899999999999999999963211 1123678765432222 2345999
Q ss_pred EEeec-CCCce-EEeccccccccCC------CCCCE-E--EEEe----CcEEEEEEEcCCCCCCcchhhHHHHHHHHHHH
Q 019834 109 LVKKC-FQPKK-VSFSLEKTALKYE------PDGRV-I--LAEF----ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRI 173 (335)
Q Consensus 109 lsr~~-l~~~~-~~~~~~~~~~~~~------~~~r~-i--~~~~----~~~~i~~~y~~~~~~~~~~~~~~~r~~~~~~l 173 (335)
++|.+ +.... ..+.++..+.... ...|. + .+.. ..+.|+++|+.+.. ...|.++++.+
T Consensus 82 l~~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~~~~v~~~Hl~~~~-------~~~R~~q~~~l 154 (267)
T 3g6s_A 82 FYRKDKYEVLDSNTFWLAENPDSVGMMGWDAVCVRIATWAKFKDKATGKIFMAVNTHFDHVG-------EEARRQSALLI 154 (267)
T ss_dssp EEETTTEEEEEEEEEESSSCTTSTTCCCTTCSSCCEEEEEEEEETTTCCEEEEEEEECCSSC-------HHHHHHHHHHH
T ss_pred EEEccceEEEecccEecCCCCCccccccccccCcceEEEEEEEEcCCCCEEEEEEeCCCCCC-------HHHHHHHHHHH
Confidence 95533 11111 1222322111111 12332 2 3332 36999999998765 23367778888
Q ss_pred HHHHHhc-CCCCEEEEccCCCCCCcccCcCchhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHHHhccC-CeeEeeecc
Q 019834 174 QEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEG-RLIDAYRFL 251 (335)
Q Consensus 174 ~~~l~~~-~~~p~Il~GDFN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~D~~~~~ 251 (335)
.+.+++. .+.|+|||||||+.+.+. .+..+...+ +|.|+|+..
T Consensus 155 ~~~l~~~~~~~pvIl~GDfN~~~~~~-----------------------------------~~~~l~~~~~~l~d~~~~~ 199 (267)
T 3g6s_A 155 IRKIKEIVGERPAVVTGDFNVTDASD-----------------------------------AYETITTNEFVMKDAYKTA 199 (267)
T ss_dssp HHHHHHHTTTSCEEEEEECSSCTTSH-----------------------------------HHHHHHSSSSCCEEHHHHC
T ss_pred HHHHHHhcCCCCEEEEeECCCCCCCH-----------------------------------HHHHhhcCCcchhhhHhhh
Confidence 8888764 478999999999866542 122333332 389998876
Q ss_pred cCCCCCCceeeeeCCCCCCcCCCcceeEEEEeChhhhcceeeeeeccCccccCCcCCCCccceEEEEecCCCc
Q 019834 252 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEASSD 324 (335)
Q Consensus 252 ~~~~~~~~~~T~~~~~~~~~~~~~~riD~i~~s~~~~~~~~~~~v~~~~~~~~~~~~SDH~pV~~~~~~~~~~ 324 (335)
..... ..+||....... ...+.||||||+++++ ++..+.+..... .+ .+|||+||.+++.....+
T Consensus 200 ~~~~~--~~~T~~~~~~~~-~~~~~riD~I~~s~~~--~~~~~~v~~~~~--~~-~~SDH~PV~a~~~~~~~~ 264 (267)
T 3g6s_A 200 ARVTG--VDYTFHDFARIP-AEDCEKIDFIFVTPQV--LVKSCEIPAEVP--EA-LLSDHNPQLADLELEHHH 264 (267)
T ss_dssp SEEEE--CSCSBCTTTTSC-GGGCCCCEEEEECTTS--EEEEEEECCCCS--SS-CCCSBCCEEEEEEEC---
T ss_pred ccccC--CCCCEeCCCCCC-CCCCCcEeEEEeCCCc--eEEEEEEecCCC--CC-CCCCcccEEEEEEecccc
Confidence 53221 346776532210 1234799999999986 367777765321 13 679999999999976543
No 18
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=99.93 E-value=6.5e-25 Score=195.28 Aligned_cols=227 Identities=17% Similarity=0.160 Sum_probs=140.0
Q ss_pred cEEEEEecccchhhhc-----CChhHHHHHHhhcCCcEEEEeccccc----cCCCCCCCceEEEeccC--CCcceEEEEE
Q 019834 42 LKFVTWNANSLLLRVK-----NNWPEFSNFITTFDPDVIALQILMRA----LSSPPFKNYQIWWSLAD--SKYAGTALLV 110 (335)
Q Consensus 42 lrI~swNv~~~~~~~~-----~~~~~l~~~i~~~~~DIv~LQEv~~~----~~~~~~~~y~~~~~~~~--~~~~Gvails 110 (335)
|||+||||++...... .+...++++|+..+||||||||+... +.. ..+|.++..... .+..|++|++
T Consensus 1 lrv~t~Ni~~~~~~~~~~~w~~r~~~i~~~i~~~~~DIv~LQEv~~~~~~~l~~--~l~y~~~~~~~~~~~~~~g~ail~ 78 (257)
T 3l1w_A 1 MKIATYNVRVDTEYDQDWQWSFRKEAVCQLINFHDWSLCCIQEVRPNQVRDLKA--YTTFTCLSAEREGDGQGEGLAILY 78 (257)
T ss_dssp CEEEEEECCCCCGGGGGGSHHHHHHHHHHHHHHHCCSEEEEEEECHHHHHHHHH--HSSSEEEEEESSSSSCSCEEEEEE
T ss_pred CEEEEEEeccCCCCccccChHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHh--cCCCcEEEecccCCCCCceEEEEE
Confidence 7999999987654321 23367999999999999999999632 211 128876654332 3467999999
Q ss_pred eec-CCCce-EEeccccccccCC-----CCCCE---EEEE----eCcEEEEEEEcCCCCCCcchhhHHHHHHHHHHHHHH
Q 019834 111 KKC-FQPKK-VSFSLEKTALKYE-----PDGRV---ILAE----FETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEF 176 (335)
Q Consensus 111 r~~-l~~~~-~~~~~~~~~~~~~-----~~~r~---i~~~----~~~~~i~~~y~~~~~~~~~~~~~~~r~~~~~~l~~~ 176 (335)
|.. +.... ..+.++..+.... ...|. +.+. ...+.|+++|+.+... ..|..++..+.++
T Consensus 79 r~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~v~~~Hl~~~~~-------~~r~~q~~~l~~~ 151 (257)
T 3l1w_A 79 NEQKVQAIDTGYFWLSETPQQPSIHPEAGCPRIALWGLFKETTQNTPFLVINVHLDHISA-------HARLAGMTVILEE 151 (257)
T ss_dssp CTTTEEEEEEEEEESSSSTTSSCCCTTCSSCCEEEEEEEEETTCSSCEEEEEEECCSSCH-------HHHHHHHHHHHHH
T ss_pred EcceEEEEecCeEECcCCCCcccccccccccceeEEEEEEEcCCCCEEEEEEeCCCCCCH-------HHHHHHHHHHHHH
Confidence 953 11111 1232321111111 12333 2333 2479999999987641 2377788888888
Q ss_pred HHh-cCCCCEEEEccCCCCCCcccCcCchhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHHHhccCCeeEeeecccCCC
Q 019834 177 VLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEK 255 (335)
Q Consensus 177 l~~-~~~~p~Il~GDFN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~ 255 (335)
+++ ....|+|||||||+.+.+. .+. .+..+ |.|+++...+..
T Consensus 152 i~~~~~~~pvil~GDfN~~~~~~-----------------------------------~~~-~l~~~-l~d~~~~~~~~~ 194 (257)
T 3l1w_A 152 LHDKIAQYPTLLMGDFNAESGEE-----------------------------------VHQ-LVQKK-FQDSKNLATHYG 194 (257)
T ss_dssp THHHHHHSCEEEEEECCCCTTSH-----------------------------------HHH-HHTTT-CEEGGGTSEEES
T ss_pred HHHHcCCCCEEEEeeCCCCCCcH-----------------------------------HHH-Hhhhh-ccchhhhhcccC
Confidence 773 2223999999999865441 111 23334 899988775432
Q ss_pred CCCceeeeeCCCCCCcCCCcceeEEEEeChhhhcceeeeeeccCccccCCcCCCCccceEEEEecCC
Q 019834 256 DMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEAS 322 (335)
Q Consensus 256 ~~~~~~T~~~~~~~~~~~~~~riD~i~~s~~~~~~~~~~~v~~~~~~~~~~~~SDH~pV~~~~~~~~ 322 (335)
..+||.........+.+.||||||+ .++ ++..+.+..... .+..+|||+||.++|.+..
T Consensus 195 ---~~~t~~~~~~~~~~~~~~riD~i~~-~~~--~~~~~~v~~~~~--~~~~~SDH~pv~~~l~~~~ 253 (257)
T 3l1w_A 195 ---PRGTFQNFTYTKPWAELEEIDYIYV-KGW--QVQQTASLTDSI--DGRFPSDHFPLEAEVAGEN 253 (257)
T ss_dssp ---CSCCBCTTCTTCCGGGCBCCEEEEE-ESE--EEEEEEECCCCB--TTBCSSSBCCEEEEEEEC-
T ss_pred ---CCCcccCCcccCCCCCCCceeEEEE-CCc--EEEEEEEeccCc--CCcccCCcceEEEEEEEEe
Confidence 3567765422111123479999999 654 356666664321 2347899999999999864
No 19
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=99.91 E-value=6.8e-24 Score=193.33 Aligned_cols=235 Identities=20% Similarity=0.162 Sum_probs=140.6
Q ss_pred CCccEEEEEecccchhhh-------cCChhHHHHHHhhcCCcEEEEeccccc----cCCCCCCCceEEEeccCC---Ccc
Q 019834 39 KDPLKFVTWNANSLLLRV-------KNNWPEFSNFITTFDPDVIALQILMRA----LSSPPFKNYQIWWSLADS---KYA 104 (335)
Q Consensus 39 ~~~lrI~swNv~~~~~~~-------~~~~~~l~~~i~~~~~DIv~LQEv~~~----~~~~~~~~y~~~~~~~~~---~~~ 104 (335)
+.+|||+||||+...... ..+...|+++|++.+||||||||+... +. ..+++|.++...... ...
T Consensus 4 ~~~lrV~t~Ni~~~~~~~~~~~~~w~~r~~~i~~~i~~~~~DIv~LQEv~~~~~~~l~-~~l~~y~~~~~~~~~g~~~g~ 82 (298)
T 3mpr_A 4 PTSLTVASYNLRNANGSDSARGDGWGQRYPVIAQMVQYHDFDIFGTQECFLHQLKDMK-EALPGYDYIGVGRDDGKDKGE 82 (298)
T ss_dssp CEEEEEEEEECCCCCHHHHHHTCCHHHHHHHHHHHHHHTTCSEEEEESBCHHHHHHHH-HHSTTEEEECCCTTTSSSSSC
T ss_pred CCcEEEEEEEeccCCCCCcccccCHHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHH-HhCCCCcEEEEecCCCCCCCc
Confidence 458999999996543211 122378999999999999999999632 11 124577665432221 233
Q ss_pred eEEEE---EeecCCCceEEeccccccccCC-----CCCCE-E--EEE----eCcEEEEEEEcCCCCCCcchhhHHHHHHH
Q 019834 105 GTALL---VKKCFQPKKVSFSLEKTALKYE-----PDGRV-I--LAE----FETFYLLNTYAPNNGWKEEENSFQRRRKW 169 (335)
Q Consensus 105 Gvail---sr~~l~~~~~~~~~~~~~~~~~-----~~~r~-i--~~~----~~~~~i~~~y~~~~~~~~~~~~~~~r~~~ 169 (335)
+++|| +|+++.. ...+.++..+.... ...|. + .+. ...+.|+++|+.+.. ...|..+
T Consensus 83 ~~aily~~sr~~i~~-~~~~~l~~~p~~~~~~~~~~~~R~~~~~~~~~~~~g~~~~v~~~Hl~~~~-------~~~R~~q 154 (298)
T 3mpr_A 83 HSAIFYRTDKFDIVE-KGDFWLSETPDVPSKGWDAVLPRICSWGHFKCKDTGFEFLFFNLHMDHIG-------KKARVES 154 (298)
T ss_dssp BCCEEEETTTEEEEE-EEEEESSSSTTSSCCCTTCSSCCEEEEEEEEETTTCCEEEEEEEECCSSC-------HHHHHHH
T ss_pred eeEEEEecCceEEEe-ccEEEccCCCCccCcccccccCceeEEEEEEEcCCCCEEEEEEecCCCCC-------HHHHHHH
Confidence 59999 4553211 11233321111111 12343 2 333 136999999998654 2347788
Q ss_pred HHHHHHHHHhc---CCCCEEEEccCCCCCCcccCcCchhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHHHhccCCeeE
Q 019834 170 DKRIQEFVLQC---SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLID 246 (335)
Q Consensus 170 ~~~l~~~l~~~---~~~p~Il~GDFN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D 246 (335)
+..+.+.+++. .+.|+|||||||+.+.+. .+..+...++|.|
T Consensus 155 ~~~l~~~i~~~~~~~~~pvIl~GDfN~~~~~~-----------------------------------~~~~l~~~g~l~D 199 (298)
T 3mpr_A 155 AFLVQEKMKELGRGKNLPAILTGDFNVDQTHQ-----------------------------------SYDAFVSKGVLCD 199 (298)
T ss_dssp HHHHHHHHHHTTTTSCCCEEEEEECSSCTTSH-----------------------------------HHHHHHTTSSSEE
T ss_pred HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCH-----------------------------------HHHHHhcCCcchh
Confidence 88888888774 468999999999866541 2334455555899
Q ss_pred eeecccCCCCCCceeeeeCCCCCCcCCCcceeEEEEeChhhhcceeeeeeccCccc----------------------cC
Q 019834 247 AYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIE----------------------LE 304 (335)
Q Consensus 247 ~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~riD~i~~s~~~~~~~~~~~v~~~~~~----------------------~~ 304 (335)
+|........ ..+||...... .....||||||+++++. +..+.+...... ..
T Consensus 200 ~~~~~~~~~~--~~~T~~~~~~~--~~~~~rID~Il~s~~~~--v~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (298)
T 3mpr_A 200 SYEKCDYRYA--LNGTFNNFDPN--SFTESRIDHIFVSPSFH--VKRYGVLTDTYRSVRENSKKEDVRDCPEEITIKAYE 273 (298)
T ss_dssp HHHHCSEEEC--SSCSBCTTCTT--CCCSCCCEEEEECTTSE--EEEEEECCCCEEEECC----------------CCEE
T ss_pred hHhhhcccCC--CCCCccCCCCC--CCCCceEEEEEeCCCee--EEEEEEecCccccCCCcccccCcccchhhhccChhh
Confidence 8876653221 23676543211 11347999999998864 455555422100 00
Q ss_pred CcCCCCccceEEEEecCCC
Q 019834 305 GFYGSDHCPVSLELSEASS 323 (335)
Q Consensus 305 ~~~~SDH~pV~~~~~~~~~ 323 (335)
....|||+||++++.....
T Consensus 274 ~~~~SDH~PV~v~~~~~~~ 292 (298)
T 3mpr_A 274 ARTPSDHFPVKVELVFDLE 292 (298)
T ss_dssp EECSSSBCCEEEEEEECSS
T ss_pred cccCCCCCcEEEEEecchh
Confidence 1156999999999986543
No 20
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=99.90 E-value=1.8e-23 Score=190.28 Aligned_cols=158 Identities=14% Similarity=0.095 Sum_probs=91.9
Q ss_pred CCCccEEEEEecccchhhh------cCChhHHHHHHhhcCCcEEEEeccccc-----cCCCCCCCc--------------
Q 019834 38 KKDPLKFVTWNANSLLLRV------KNNWPEFSNFITTFDPDVIALQILMRA-----LSSPPFKNY-------------- 92 (335)
Q Consensus 38 ~~~~lrI~swNv~~~~~~~------~~~~~~l~~~i~~~~~DIv~LQEv~~~-----~~~~~~~~y-------------- 92 (335)
.+..|||+||||+++.... ..+...+...|...+||||||||+... +.......|
T Consensus 7 ~~~~lrv~t~Ni~~~~~~~~~~~~~~~r~~~i~~~~~~~~~DIv~LQEv~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 86 (301)
T 1zwx_A 7 YPGNFKITSHNVYLFSRNIYPNWGQMHRADLIAQADYMKNNDVVILNEAFDTSASHRLLNNLREMYPHQTPVIGRSKHGW 86 (301)
T ss_dssp CCCSCEEEEEEEEECCTTTSTTSCHHHHHHHHHTSGGGSSCSEEEEEEECSHHHHHHHHHHTTTTCCEECCCTTSCSTTC
T ss_pred CCCceEEEEEECccCCccccCCCCHHHHHHHHHHhhccCCCCEEEEeccccHHHHHHHHHHHhhcCCccccccCCccccc
Confidence 3458999999998863211 111244555667889999999999622 110001122
Q ss_pred eEEEec---cCCCcceEEEEEeecCCCceEEeccccc--cccCCCCCCEEEEEe----CcEEEEEEEcCCCCCCcc-hhh
Q 019834 93 QIWWSL---ADSKYAGTALLVKKCFQPKKVSFSLEKT--ALKYEPDGRVILAEF----ETFYLLNTYAPNNGWKEE-ENS 162 (335)
Q Consensus 93 ~~~~~~---~~~~~~Gvailsr~~l~~~~~~~~~~~~--~~~~~~~~r~i~~~~----~~~~i~~~y~~~~~~~~~-~~~ 162 (335)
...+.. ...+..|++||||+++.... ...++.. .... ....++.+.+ ..+.|+++|+++...... ...
T Consensus 87 ~~~~g~~~~~~~~~~G~ailSr~pi~~~~-~~~~~~~~~~~~~-~~r~~~~~~~~~~g~~~~v~~~Hl~~~~~~~~~~~~ 164 (301)
T 1zwx_A 87 DKTEGNYSNFALEDGGVAVVSQWPIVEKS-QHIFQRGGGADRL-SNKGFAYVKIMKNGKPYHIIGTHTQADDSLISKDTS 164 (301)
T ss_dssp SEEEC-----CCBCCCCEEEESSCEEEEE-EEECSCCCGGGGG-BCCEEEEEEEEETTEEEEEEEEECCCCCTTSCHHHH
T ss_pred cccccccccccccCCCEEEEecCCcccce-EEEecCCCCcccc-cCCCeEEEEEEECCEEEEEEEecCCCCCCCCCcccc
Confidence 111110 01235799999999742211 2222210 0111 1122344433 369999999988753210 123
Q ss_pred HHHHHHHHHHHHHHHHhc---CCCCEEEEccCCCCCCc
Q 019834 163 FQRRRKWDKRIQEFVLQC---SGKPLIWCGDLNVSHEE 197 (335)
Q Consensus 163 ~~~r~~~~~~l~~~l~~~---~~~p~Il~GDFN~~~~~ 197 (335)
...|..+++.|.+++++. .+.|+|||||||..+.+
T Consensus 165 ~~~R~~q~~~l~~~i~~~~~~~~~pvIl~GDfN~~~~~ 202 (301)
T 1zwx_A 165 RAIRAEQMQEIQTFIAKKNIPKDEIIFIGGDLNVNYGT 202 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCTTSEEEEEEECCCCTTS
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCeEEEEeeCCCCCCc
Confidence 445888899999998763 45799999999997665
No 21
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A
Probab=99.89 E-value=1.2e-22 Score=186.99 Aligned_cols=159 Identities=18% Similarity=0.173 Sum_probs=91.1
Q ss_pred CCCCccEEEEEecccchh------hhcCChhHHHHHHhhcCCcEEEEecccc-----ccCCCCCCCceEEEe-cc--CC-
Q 019834 37 SKKDPLKFVTWNANSLLL------RVKNNWPEFSNFITTFDPDVIALQILMR-----ALSSPPFKNYQIWWS-LA--DS- 101 (335)
Q Consensus 37 ~~~~~lrI~swNv~~~~~------~~~~~~~~l~~~i~~~~~DIv~LQEv~~-----~~~~~~~~~y~~~~~-~~--~~- 101 (335)
.....|||+||||+++.. ....+...+...+...+||||||||+.. .+.+.....|.+.+. .+ ..
T Consensus 25 ~~~~~lrV~T~Ni~~~~~~~~~~~~~~~R~~~i~~~~~~~~pDIv~LQEv~~~~~~~~l~~~L~~~~py~~~~~g~~~~~ 104 (317)
T 3i41_A 25 KDDTDLKLVSHNVYMLSTVLYPNWGQYKRADLIGQSSYIKNNDVVIFNEAFDNGASDKLLSNVKKEYPYQTPVLGRSQSG 104 (317)
T ss_dssp ---CCCCEEEEEEEECCTTTSTTSCHHHHHHHHHHCSTTSSCSEEEEEEECSHHHHHHHHHHTTTTCCEECCCTTSCSTT
T ss_pred CCCCceEEEEEecccCccccCCCccHHHHHHHHHHHhhccCCCEEEEEeeccHHHHHHHHHHHHHhCCcccccCCccccC
Confidence 355789999999987632 1111224456666678999999999942 111111112322211 00 00
Q ss_pred -------------CcceEEEEEeecCCCceEEeccccccccCC-CCC-CEEEEEe----CcEEEEEEEcCCCCCCcc-hh
Q 019834 102 -------------KYAGTALLVKKCFQPKKVSFSLEKTALKYE-PDG-RVILAEF----ETFYLLNTYAPNNGWKEE-EN 161 (335)
Q Consensus 102 -------------~~~Gvailsr~~l~~~~~~~~~~~~~~~~~-~~~-r~i~~~~----~~~~i~~~y~~~~~~~~~-~~ 161 (335)
...|++||||+++.... ...++.. ...+ ... .++.+.+ ..+.|+++|+.+...... ..
T Consensus 105 ~~~~~~~y~~~~~~~~G~~ilSr~Pi~~~~-~~~~~~~-~~~d~~~~r~~~~~~i~~~g~~v~v~~~Hl~~~~~~~~~~~ 182 (317)
T 3i41_A 105 WDKTEGSYSSTVAEDGGVAIVSKYPIKEKI-QHVFKSG-CGFDNDSNKGFVYTKIEKNGKNVHVIGTHTQSEDSRCGAGH 182 (317)
T ss_dssp CSEEEESCCSSCSBCCCCEEEESSCEEEEE-EEECSCC-CSSGGGBCCEEEEEEEEETTEEEEEEEEECCCCCSSSCTTH
T ss_pred ccCcccccccccccCCccEEEeCCCCccce-eEECCCC-CCcccccCcceEEEEEEECCEEEEEEEECCCCCCCCCcccc
Confidence 01599999999753222 2222210 0000 112 2233332 369999999987653210 12
Q ss_pred hHHHHHHHHHHHHHHHHhc---CCCCEEEEccCCCCCCc
Q 019834 162 SFQRRRKWDKRIQEFVLQC---SGKPLIWCGDLNVSHEE 197 (335)
Q Consensus 162 ~~~~r~~~~~~l~~~l~~~---~~~p~Il~GDFN~~~~~ 197 (335)
....|..++..|.++++.. .+.|+|||||||..+.+
T Consensus 183 ~~~~R~~q~~~l~~~i~~~~~~~~~pvIl~GDfN~~~~s 221 (317)
T 3i41_A 183 DRKIRAEQMKEISDFVKKKNIPKDETVYIGGDLNVNKGT 221 (317)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCTTSCEEEEEECCCCTTS
T ss_pred cHHHHHHHHHHHHHHHHHhccCCCCeEEEEeECCCCCCC
Confidence 3456889999999999873 56899999999997754
No 22
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=99.88 E-value=1.2e-21 Score=178.42 Aligned_cols=159 Identities=15% Similarity=0.129 Sum_probs=90.5
Q ss_pred CCCccEEEEEecccchhhh------cCChhHHHHHHhhcCCcEEEEecccccc---------CCCC------C-----CC
Q 019834 38 KKDPLKFVTWNANSLLLRV------KNNWPEFSNFITTFDPDVIALQILMRAL---------SSPP------F-----KN 91 (335)
Q Consensus 38 ~~~~lrI~swNv~~~~~~~------~~~~~~l~~~i~~~~~DIv~LQEv~~~~---------~~~~------~-----~~ 91 (335)
....|||+||||+++.... ..+...+...+...+||||||||+.... .... + .+
T Consensus 6 ~~~~lrv~t~Ni~~~~~~~~~~~~~~~r~~~~~~~~~~~~~DIv~LQEv~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 85 (306)
T 2ddr_A 6 QNDTLKVMTHNVYMLSTNLYPNWGQTERADLIGAADYIKNQDVVILNEVFDNSASDRLLGNLKKEYPNQTAVLGRSSGSE 85 (306)
T ss_dssp -CCEEEEEEEEEEECCTTTCTTSCHHHHHHHHHHCSTTCSCSEEEEEEECCHHHHHHHHHHHTTTCCEECCCTTSCCSTT
T ss_pred CCCEEEEEEEECccCcccccCCCCHHHHHHHHHHHhhccCCCEEEEEeecCHHHHHHHHHHHhhhCCceeeccCcccccc
Confidence 3458999999998864210 1112445555678899999999996321 1100 0 12
Q ss_pred ceEEEecc---CCCcceEEEEEeecCCCceEEeccccccccCCCCCC-EEEEEe----CcEEEEEEEcCCCCCCcc-hhh
Q 019834 92 YQIWWSLA---DSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGR-VILAEF----ETFYLLNTYAPNNGWKEE-ENS 162 (335)
Q Consensus 92 y~~~~~~~---~~~~~Gvailsr~~l~~~~~~~~~~~~~~~~~~~~r-~i~~~~----~~~~i~~~y~~~~~~~~~-~~~ 162 (335)
|+..+... ..+..|++||||+++.... ...++..........| ++.+.+ ..+.|+++|+++...... ...
T Consensus 86 ~~~~~~~~~~~~~~~~G~ailSr~pi~~~~-~~~~~~~~~~~~~~~r~~~~~~i~~~g~~~~v~~~Hl~~~~~~~~~~~~ 164 (306)
T 2ddr_A 86 WDKTLGNYSSSTPEDGGVAIVSKWPIAEKI-QYVFAKGCGPDNLSNKGFVYTKIKKNDRFVHVIGTHLQAEDSMCGKTSP 164 (306)
T ss_dssp SSEEEESCCTTCSSCCCCEEEESSCEEEEE-EEECSCCC----CCCCEEEEEEEEETTEEEEEEEEECCCC-------CH
T ss_pred cccccccccccCccCCeEEEEECCCccccc-EEEcCCCCCcchhcCCCeEEEEEEeCCEEEEEEEECCCCCCCCcccccC
Confidence 33222211 1235799999999643211 2222210000001222 343333 369999999988752110 023
Q ss_pred HHHHHHHHHHHHHHHHhc---CCCCEEEEccCCCCCCc
Q 019834 163 FQRRRKWDKRIQEFVLQC---SGKPLIWCGDLNVSHEE 197 (335)
Q Consensus 163 ~~~r~~~~~~l~~~l~~~---~~~p~Il~GDFN~~~~~ 197 (335)
...|..+++.|.++++.. .+.|+|||||||..+..
T Consensus 165 ~~~R~~q~~~l~~~i~~~~~~~~~pvil~GDfN~~~~~ 202 (306)
T 2ddr_A 165 ASVRTNQLKEIQDFIKNKNIPNNEYVLIGGDMNVNKIN 202 (306)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCTTSCEEEEEECCCCCTT
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCEEEEEeeCCCCccc
Confidence 445888899999998763 35799999999998754
No 23
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1
Probab=99.83 E-value=8.1e-20 Score=158.92 Aligned_cols=148 Identities=13% Similarity=0.153 Sum_probs=98.5
Q ss_pred CCCccEEEEEecccchhhhcCCh-hHHHHHHhhcC-CcEEEEeccccc------cCC----C--------------CCCC
Q 019834 38 KKDPLKFVTWNANSLLLRVKNNW-PEFSNFITTFD-PDVIALQILMRA------LSS----P--------------PFKN 91 (335)
Q Consensus 38 ~~~~lrI~swNv~~~~~~~~~~~-~~l~~~i~~~~-~DIv~LQEv~~~------~~~----~--------------~~~~ 91 (335)
....+||+|||++|.......+| ..|...|.+.+ +|||+|||+... ... . ..++
T Consensus 12 ~~~~~kV~TwNiqgs~~~teskw~~~v~~lI~~~~~~DIvaLQEag~~p~sa~~t~R~~~~~g~~v~E~~w~lGt~srp~ 91 (262)
T 2f1n_A 12 DLTDFRVATWNLQGASATTESKWNINVRQLISGENAVDILAVQEAGSPPSTAVDTGRVIPSPGIPVRELIWNLSTNSRPQ 91 (262)
T ss_dssp CGGGCCEEEEEEEECTTSCHHHHHTHHHHHHSSTTCCSEEEEEEECSCCTTCEECCCCCCCSSCCCEEEEEECCSSSSSC
T ss_pred ccceeEEEEEEcCCCCCCCcccccccHHHHHccCCCCCEEEEeecCCcCcccccccccccCCCcCHHHHHHHhCCCCCCc
Confidence 45689999999988653222112 34778898877 999999998522 000 0 0023
Q ss_pred ceEEEecc---CCCcceEEEEEeecCCCceEEeccccccccCCCCCCEEEEEeCcEEEEEEEcCCCCCCcchhhHHHHHH
Q 019834 92 YQIWWSLA---DSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRK 168 (335)
Q Consensus 92 y~~~~~~~---~~~~~Gvailsr~~l~~~~~~~~~~~~~~~~~~~~r~i~~~~~~~~i~~~y~~~~~~~~~~~~~~~r~~ 168 (335)
+.++|... ..++.|+||+||.++. ..+.++.. . ...+.++.+.+..+.++++|+.+.+..+ +.+
T Consensus 92 ~~yiY~~~~D~~~~r~nlAIlSr~~ad---ev~vLp~~--~-~~~Rp~lgiri~~~~ff~tHa~a~~g~d-------a~a 158 (262)
T 2f1n_A 92 QVYIYFSAVDALGGRVNLALVSNRRAD---EVFVLSPV--R-QGGRPLLGIRIGNDAFFTAHAIAMRNND-------APA 158 (262)
T ss_dssp EEEEEEECSCSSSCSSCEEEEESSCCS---EEEEECCS--S-TTCCCEEEEEETTEEEEEEECCSSSSCS-------HHH
T ss_pred eEEEEEeeccCCCCceeeEEEEccccc---ceEECCCC--C-CCCCceEEEEECCEEEEEEEecCCCCcc-------HHH
Confidence 54433322 1247799999999754 33434421 1 2266788899999999999998875322 445
Q ss_pred HHHHHHHHHHhcCC-----CCEEEEccCCCCCCcc
Q 019834 169 WDKRIQEFVLQCSG-----KPLIWCGDLNVSHEEI 198 (335)
Q Consensus 169 ~~~~l~~~l~~~~~-----~p~Il~GDFN~~~~~~ 198 (335)
+...+.+++...+. .||||+||||..|.+.
T Consensus 159 ~v~~I~~~~~~~~~~~~~~~pwii~GDFNr~P~sl 193 (262)
T 2f1n_A 159 LVEEVYNFFRDSRDPVHQALNWMILGDFNREPADL 193 (262)
T ss_dssp HHHHHHHHHHTCSSHHHHTCEEEEEEECSSCHHHH
T ss_pred HHHHHHHHHhcCcccccCCCcEEEEecCCCCCcch
Confidence 67788888876555 5999999999987663
No 24
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A
Probab=99.81 E-value=2.2e-19 Score=169.00 Aligned_cols=155 Identities=16% Similarity=0.200 Sum_probs=91.8
Q ss_pred CCccEEEEEecccch--------------hhhcCChhHHHHHHhhcCCcEEEEeccccc-cCC---CCC--CCceEEEec
Q 019834 39 KDPLKFVTWNANSLL--------------LRVKNNWPEFSNFITTFDPDVIALQILMRA-LSS---PPF--KNYQIWWSL 98 (335)
Q Consensus 39 ~~~lrI~swNv~~~~--------------~~~~~~~~~l~~~i~~~~~DIv~LQEv~~~-~~~---~~~--~~y~~~~~~ 98 (335)
...|||+||||..-. .....|...|+++|...+||||||||+... +.+ ..+ .||..++..
T Consensus 29 ~~~~~V~syNIl~d~~~~~~~~~~~p~~~~~W~~R~~~i~~~i~~~~pDIi~lQEv~~~q~~~~l~~~L~~~gY~~v~~~ 108 (398)
T 3ngq_A 29 SASFTVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKGIMEEIVNCDADIISLQEVETEQYFTLFLPALKERGYDGFFSP 108 (398)
T ss_dssp CEEEEEEEEECCCGGGCCTTTCTTSCHHHHSHHHHHHHHHHHHHHHCCSEEEEEEEEHHHHHHTHHHHHHHTTEEEEEEE
T ss_pred CCCEEEEEEccCcCcCCccccccCCChhhcCHHHHHHHHHHHHHhcCCCEEEEecccHHHHHHHHHHHHHhCCceEEEec
Confidence 458999999995311 111223467999999999999999999642 111 112 488776653
Q ss_pred c-C---------CCcceEEEEEeec-CCCce-EEecccccccc-----------CCCCCCE---EEEEe-----------
Q 019834 99 A-D---------SKYAGTALLVKKC-FQPKK-VSFSLEKTALK-----------YEPDGRV---ILAEF----------- 141 (335)
Q Consensus 99 ~-~---------~~~~Gvailsr~~-l~~~~-~~~~~~~~~~~-----------~~~~~r~---i~~~~----------- 141 (335)
. . .+..|+||++|.. +..+. ..+.+...+.. ......+ +.++.
T Consensus 109 k~r~~~~~~~~~~~~eG~AIfyr~~~f~ll~~~~i~ls~~~~~~s~~~~~~~~Ri~t~~nval~~~L~~~~~~~~~~~~~ 188 (398)
T 3ngq_A 109 KSRAKIMSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQVAMANSDGSEAMLNRVMTKDNIGVAVVLEVHKELFGAGMKP 188 (398)
T ss_dssp SCTTSCCCHHHHHTCEEEEEEEETTTEEEEEEEEEEHHHHHHHTCTTCHHHHHTTTTCCCEEEEEEEEECGGGC------
T ss_pred CCCccccccccccCcceeEEEEECCcceEEeeeEEecCCCcccccccchhhhcceeeccceeEEEEEEEccccccccccc
Confidence 2 1 2467999999886 21121 13333211110 0001122 22222
Q ss_pred ------CcEEEEEEEcCCCCCCcchhhHHHHHHHHHHHHHHHHhc---------------CCCCEEEEccCCCCCCcc
Q 019834 142 ------ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC---------------SGKPLIWCGDLNVSHEEI 198 (335)
Q Consensus 142 ------~~~~i~~~y~~~~~~~~~~~~~~~r~~~~~~l~~~l~~~---------------~~~p~Il~GDFN~~~~~~ 198 (335)
..+.|+|+|+.+..... ..|..|+..|.+.+++. ...|+|||||||+.+.+.
T Consensus 189 ~~~~~~~~l~V~nTHL~~~p~~~-----~vRl~Q~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~PvIl~GDFNs~P~s~ 261 (398)
T 3ngq_A 189 IHAADKQLLIVANAHMHWDPEYS-----DVKLIQTMMFVSEVKNILEKASSRPGSPTADPNSIPLVLCADLNSLPDSG 261 (398)
T ss_dssp -----CCEEEEEEEECCCCTTCH-----HHHHHHHHHHHHHHHHHHCC-------------CCCEEEEEECSCCTTSH
T ss_pred ccCCCCcEEEEEEeCcCCCCCCH-----HHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCceEEEeeCCCCCCCH
Confidence 24999999998855321 23666666666665542 346999999999998863
No 25
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=99.80 E-value=2e-18 Score=151.82 Aligned_cols=144 Identities=13% Similarity=0.137 Sum_probs=88.6
Q ss_pred CccEEEEEecccchhhhcCChh-HHHHHHhh-cCCcEEEEeccccc----cC--CC----------C--------CCCce
Q 019834 40 DPLKFVTWNANSLLLRVKNNWP-EFSNFITT-FDPDVIALQILMRA----LS--SP----------P--------FKNYQ 93 (335)
Q Consensus 40 ~~lrI~swNv~~~~~~~~~~~~-~l~~~i~~-~~~DIv~LQEv~~~----~~--~~----------~--------~~~y~ 93 (335)
..+||+|||++|.......+|. .++.+|++ .++|||+|||+..- .. .. . -+++.
T Consensus 3 ~~~kv~TwNi~g~~~~~~~k~~~~i~~~i~~~~~~DIlaLQEa~~~p~~~~~~~r~~~~~g~~v~e~~w~lg~~~r~~~~ 82 (261)
T 1sr4_B 3 SDFKVATWNLQGSSAVNESKWNINVRQLLSGEQGADILMVQEAGSLPSSAVRTSRVIQHGGTPIEEYTWNLGTRSRPNMV 82 (261)
T ss_dssp GGSCEEEEECCCCSSSSHHHHHHHHHHHHCSTTCCSEEEEESCCSCCTTCEECSCCCCCSSSCCEEEEEESSCSSSCCEE
T ss_pred cccEEEEEEcCCCCCCChhhhhhHHHHHHcCCCCCCEEEEecCCCCCCccccchhhhcccCCchhhhhhhcccccCCCce
Confidence 3689999999874332211223 58899998 88999999998531 11 10 0 01232
Q ss_pred E-EEecc--CCCcceEEEEEeecCCCceEEeccccccccCCCCCCEEEEEeCcEEEEEEEcCCCCCCcchhhHHHHHHHH
Q 019834 94 I-WWSLA--DSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWD 170 (335)
Q Consensus 94 ~-~~~~~--~~~~~Gvailsr~~l~~~~~~~~~~~~~~~~~~~~r~i~~~~~~~~i~~~y~~~~~~~~~~~~~~~r~~~~ 170 (335)
+ ++..- ..+..|+||+||.++ ...+.++.. ........++.+.+..+.|+++|+...... + +..+.
T Consensus 83 yiy~~~~d~~~g~~g~AIlSR~~~---~~v~~l~~~-~~~~~~R~~l~i~i~g~~f~s~Hl~~~~~~-e------a~~~v 151 (261)
T 1sr4_B 83 YIYYSRLDVGANRVNLAIVSRRQA---DEAFIVHSD-SSVLQSRPAVGIRIGTDVFFTVHALATGGS-D------AVSLI 151 (261)
T ss_dssp EEEEECCCTTTSCSCEEEEESSCC---SEEEEECCC-CCSSCCCCEEEEEETTEEEEEEECCTTTTT-T------HHHHH
T ss_pred EEEEEeecCCCCccceEEEEccch---hceEEcCCC-CCCCcCcceEEEEECCeEEEEeCCCCCCCc-h------HHHHH
Confidence 3 22221 123569999999853 223333321 100124456777888899999999877521 1 34556
Q ss_pred HHHHHHHHhc---CC---CCEEEEccCCCC
Q 019834 171 KRIQEFVLQC---SG---KPLIWCGDLNVS 194 (335)
Q Consensus 171 ~~l~~~l~~~---~~---~p~Il~GDFN~~ 194 (335)
..+.+++... +. .++|||||||..
T Consensus 152 ~~I~~~~~~~~~~~~~~~~~~ii~GDFN~~ 181 (261)
T 1sr4_B 152 RNIFTTFNSSSSPPERRVYSWMVVGDFNRA 181 (261)
T ss_dssp HHHHHHHHC---CGGGGGCEEEEEEECSSC
T ss_pred HHHHHHHHhcccCCcccCCcEEEEeeCCCC
Confidence 6677777554 44 799999999974
No 26
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D*
Probab=99.76 E-value=9.8e-18 Score=149.50 Aligned_cols=147 Identities=11% Similarity=0.078 Sum_probs=78.4
Q ss_pred cEEEEEecccchhhhcCChhHHHHHHhhc--CCcEEEEeccccc----cCC-------CCCCCceEEEeccCC---Ccce
Q 019834 42 LKFVTWNANSLLLRVKNNWPEFSNFITTF--DPDVIALQILMRA----LSS-------PPFKNYQIWWSLADS---KYAG 105 (335)
Q Consensus 42 lrI~swNv~~~~~~~~~~~~~l~~~i~~~--~~DIv~LQEv~~~----~~~-------~~~~~y~~~~~~~~~---~~~G 105 (335)
|||+||||+++..... +...+++.|.+. +||||||||+... +.. .....|.++...... ...+
T Consensus 1 lrv~s~NI~~~g~~~~-~~~~~~~~i~~~~~~~DIv~LQEv~~~~~~~~~~l~~~L~~~~~~~y~~v~~~~~~~~~~~~~ 79 (260)
T 2a40_B 1 LKIAAFNIRTFGETKM-SNATLASYIVRIVRRYDIVLIQEVRDSHLVAVGKLLDYLNQDDPNTYHYVVSEPLGRNSYKER 79 (260)
T ss_dssp CEEEEEEEEEESHHHH-HSHHHHHHHHHHHTTCSEEEEEEECCTTSHHHHHHHHHHTSSSTTSCEEEECCCBCSSSCCBE
T ss_pred CEEEEEehhhhCCCcc-chHHHHHHHHHHhccCCEEEEEEEEcCchhHHHHHHHHHHhccCCCcEEEEcccCCCCCCcEE
Confidence 6999999987532221 113445555543 8999999999642 111 011357766553211 2346
Q ss_pred EEEEEeecCCCceEEecccccc-----ccCCCCCCEEEEE-----eCcEEEEEEEcCCCCCCcchhhHHHHHHHHHHHHH
Q 019834 106 TALLVKKCFQPKKVSFSLEKTA-----LKYEPDGRVILAE-----FETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQE 175 (335)
Q Consensus 106 vailsr~~l~~~~~~~~~~~~~-----~~~~~~~r~i~~~-----~~~~~i~~~y~~~~~~~~~~~~~~~r~~~~~~l~~ 175 (335)
+++++|.+.......+.++... ..+.....+..+. ..+++|+++|+.+... .. ..+.+..+.+
T Consensus 80 ~~~ly~~~~v~~~~~~~~~~~~~~~~~~~~~R~p~~~~~~~~~~~g~~~~vi~~Hl~~~~~------~~-q~~~l~~~~~ 152 (260)
T 2a40_B 80 YLFLFRPNKVSVLDTYQYDDGCESCGNDSFSREPAVVKFSSHSTKVKEFAIVALHSAPSDA------VA-EINSLYDVYL 152 (260)
T ss_dssp EEEEECTTTCEEEEEEECCTTSTTTHHHHCSSCCEEEEEECTTSSSSEEEEEECCCCGGGH------HH-HHHHHHHHHH
T ss_pred EEEEEcCceeEecCceeccCCCcCCCCCceeeCCEEEEEEeCCCCCceEEEEEecCCCCCc------HH-HHHHHHHHHH
Confidence 8999998621111122222110 0011222334443 3479999999986541 11 1222223222
Q ss_pred HHHh-cCCCCEEEEccCCCCCC
Q 019834 176 FVLQ-CSGKPLIWCGDLNVSHE 196 (335)
Q Consensus 176 ~l~~-~~~~p~Il~GDFN~~~~ 196 (335)
.+.+ .+..|+|||||||..+.
T Consensus 153 ~~~~~~~~~~vil~GDfN~~~~ 174 (260)
T 2a40_B 153 DVQQKWHLNDVMLMGDFNADCS 174 (260)
T ss_dssp HHHHHHCCCCEEEEEECCCSTT
T ss_pred HHHHhCCCCCEEEEecCCCCCc
Confidence 2222 35689999999998665
No 27
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.73 E-value=9.5e-19 Score=177.79 Aligned_cols=155 Identities=13% Similarity=0.146 Sum_probs=32.8
Q ss_pred CCCccEEEEEecccc--hh------------hhcCChhHHHHHHhhcCCcEEEEeccccc----cCCCCC--CCceEEEe
Q 019834 38 KKDPLKFVTWNANSL--LL------------RVKNNWPEFSNFITTFDPDVIALQILMRA----LSSPPF--KNYQIWWS 97 (335)
Q Consensus 38 ~~~~lrI~swNv~~~--~~------------~~~~~~~~l~~~i~~~~~DIv~LQEv~~~----~~~~~~--~~y~~~~~ 97 (335)
....+++++||+... .. ....|...|++.|...+|||||||||... +....+ .||..++.
T Consensus 391 ~~~~~~~ls~Nil~~~~~~~~~~~~~p~~~~~w~~R~~~i~~~I~~~~pDIIcLQEV~~~~~~~~l~~~l~~~gY~~~~~ 470 (727)
T 4b8c_D 391 AKRTFTVLSYNTLCQHYATPKMYRYTPSWALSWDYRRNKLKEQILSYDSDLLCLQEVESKTFEEYWVPLLDKHGYTGIFH 470 (727)
T ss_dssp -----------CCCGGGCCTTTCCSSCHHHHSHHHHHHHHHHHHHHSCCSSEEEC-CCHHHHHTTTCC-------CEEC-
T ss_pred cccceeeeeccccccccCccccccccchhhhhhhhhhhHHHHHHHHcCCCeEEEEecCHHHHHHHHHHHHHhCCccEEEe
Confidence 445789999999631 00 11122367999999999999999999742 212223 37765542
Q ss_pred cc----------CCCcceEEEEE---eecCCCceEEecccccc----------ccCC---CCCCE---EEE----EeCcE
Q 019834 98 LA----------DSKYAGTALLV---KKCFQPKKVSFSLEKTA----------LKYE---PDGRV---ILA----EFETF 144 (335)
Q Consensus 98 ~~----------~~~~~Gvails---r~~l~~~~~~~~~~~~~----------~~~~---~~~r~---i~~----~~~~~ 144 (335)
.. .....|+||++ |+++... ..+.+...+ .... ...++ +.+ ....+
T Consensus 471 ~~~~~~~~~~~~~~~~~G~AI~y~~srf~l~~~-~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~i~~~~~l~~~~~g~~l 549 (727)
T 4b8c_D 471 AKARAKTMHSKDSKKVDGCCIFFKRDQFKLITK-DAMDFSGAWMKHKKFQRTEDYLNRAMNKDNVALFLKLQHIPSGDTI 549 (727)
T ss_dssp ---------------CCCCEEEC---------------------------------------------------------
T ss_pred ccCCcccccccCCCCcccEEEEEEcccceEeee-eEEeechhhhhchhhcccHHHHhhcccCCcEEEEEEEeecCCCceE
Confidence 11 22367999994 4442211 111121000 0000 01112 111 12468
Q ss_pred EEEEEEcCCCCCCcchhhHHHHHHHHHHHHHHHHhc-------------CCCCEEEEccCCCCCCcc
Q 019834 145 YLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-------------SGKPLIWCGDLNVSHEEI 198 (335)
Q Consensus 145 ~i~~~y~~~~~~~~~~~~~~~r~~~~~~l~~~l~~~-------------~~~p~Il~GDFN~~~~~~ 198 (335)
.|+++|+.+...... .|..+...+.+.+.+. .+.|+|||||||+.+.+.
T Consensus 550 ~V~ntHL~~~p~~~~-----~R~~Qa~~l~~~l~~~~~~~~~~~~~~~~~~~pvIl~GDFNs~P~s~ 611 (727)
T 4b8c_D 550 WAVTTHLHWDPKFND-----VKTFQVGVLLDHLETLLKEETSHNFRQDIKKFPVLICGDFNSYINSA 611 (727)
T ss_dssp -------------------------------------------------------------------
T ss_pred EEEEeccccCCCCCc-----hHHHHHHHHHHHHHHHHHHhcccccccccCCCceEEecccCCCCCCc
Confidence 999999987542211 1333444444444331 356999999999988763
No 28
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X*
Probab=99.50 E-value=1.4e-15 Score=137.32 Aligned_cols=145 Identities=17% Similarity=0.194 Sum_probs=72.2
Q ss_pred CccEEEEEecccchhhhcCChhHHHHHHh---hcCCcE--EEEeccccccCC------------CCCC--CceEEEeccC
Q 019834 40 DPLKFVTWNANSLLLRVKNNWPEFSNFIT---TFDPDV--IALQILMRALSS------------PPFK--NYQIWWSLAD 100 (335)
Q Consensus 40 ~~lrI~swNv~~~~~~~~~~~~~l~~~i~---~~~~DI--v~LQEv~~~~~~------------~~~~--~y~~~~~~~~ 100 (335)
..|+|+||||++.... ..+.+++. ...||| |+|||+...... ..++ +|..+.. ..
T Consensus 7 ~~i~V~T~Nv~~~~~~-----~~l~~wl~~~~~~~pDI~viglQEv~~~~~~~~~~~~w~~~l~~~L~~~~Y~~v~~-~~ 80 (282)
T 2imq_X 7 LSVHTVSWNSGHERAP-----TNLEELLGLNSGETPDVIAVAVQGFGFQTDKPQQGPACVKNFQSLLTSKGYTKLKN-TI 80 (282)
T ss_dssp EEEEEEEEEEETCCCC-----SCCHHHHTCTTSCCCSEEEEEEEESCTTTCTTCCHHHHHHHHHHHHHHTTEEEEEE-EE
T ss_pred cEEEEEEEeCCCCcCc-----hhHHHHhcccccCCCCEEEEEeeeeccccccchhhHHHHHHHHHhcCCCceEEEEe-cc
Confidence 4799999999765332 12445554 678996 599998632110 0122 3433322 11
Q ss_pred CCcceEE--EEEeecCCCc-eEEeccccccccCCCCCCE-EEEEe--CcEEEEEEEcCCCCCCcchhhHHHHHHHHHHHH
Q 019834 101 SKYAGTA--LLVKKCFQPK-KVSFSLEKTALKYEPDGRV-ILAEF--ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQ 174 (335)
Q Consensus 101 ~~~~Gva--ilsr~~l~~~-~~~~~~~~~~~~~~~~~r~-i~~~~--~~~~i~~~y~~~~~~~~~~~~~~~r~~~~~~l~ 174 (335)
.+..|++ |++|.++.+. ... ............|.+ +.+.. ..+.++|+|+.+....... |...++.+.
T Consensus 81 ~~~~G~~l~vf~k~~~~~~i~~~-~~~~~~g~~g~kGav~~r~~~~~~~~~fvn~HL~~~~~~~~~-----R~~~~~~I~ 154 (282)
T 2imq_X 81 TETMGLTVYCLEKHLDQNTLKNE-TIIVTVDDQKKSGGIVTSFTIYNKRFSFTTSRMSDEDVTSTN-----TKYAYDTRL 154 (282)
T ss_dssp CSSEEEEEEEEGGGCCTTTCCCE-EEEEECSTTSCSEEEEEEEEETTEEEEEEEEECCTTCCCTTS-----SSSSCCGGG
T ss_pred CceeEEEEEEEEccccCccceee-eeccccccccCCceEEEEEEECCEEEEEEEECCCCCCchHHH-----HHHHHHHHH
Confidence 3334544 4456653221 111 101001112222322 33333 3699999999987432111 222222333
Q ss_pred HHHHh-cCCCCEEEEccCCCCCC
Q 019834 175 EFVLQ-CSGKPLIWCGDLNVSHE 196 (335)
Q Consensus 175 ~~l~~-~~~~p~Il~GDFN~~~~ 196 (335)
+.+.. ....++|++||||....
T Consensus 155 ~~~~~~~~~~~vi~~GDfN~r~~ 177 (282)
T 2imq_X 155 DYSKKDDPSDFLFWIGDLNVRVE 177 (282)
T ss_dssp CTTSSSSCCSEEEEEEECSCCBC
T ss_pred HhhhccCccceEEEecccccccC
Confidence 33322 24568999999997544
No 29
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A*
Probab=99.47 E-value=4.8e-13 Score=123.55 Aligned_cols=141 Identities=14% Similarity=0.181 Sum_probs=80.7
Q ss_pred CccEEEEEecccchhhhcCChhHHHHHHhh---cCCcE--EEEecccc-ccC-----------------CCCC-------
Q 019834 40 DPLKFVTWNANSLLLRVKNNWPEFSNFITT---FDPDV--IALQILMR-ALS-----------------SPPF------- 89 (335)
Q Consensus 40 ~~lrI~swNv~~~~~~~~~~~~~l~~~i~~---~~~DI--v~LQEv~~-~~~-----------------~~~~------- 89 (335)
..+.|+||||++... . ..|.++|.. ..||| |+|||+-. ... ...+
T Consensus 25 ~~i~v~TwNv~g~~~-~----~~l~~~L~~~~~~~~DI~viglQEiv~l~~~~~~~~~~~~~~~w~~~i~~~L~~~~~~~ 99 (347)
T 1i9z_A 25 VKIFVASYNLNGCSA-T----TKLENWLFPENTPLADIYVVGFQEIVQLTPQQVISADPAKRREWESCVKRLLNGKCTSG 99 (347)
T ss_dssp EEEEEEEEECTTCCC-C----SCCHHHHSCSSSCCCSEEEEEEECSSCCC-----CCCHHHHHHHHHHHHHHHHHTCCSS
T ss_pred cEEEEEeEecCCCCC-c----hhHHHHhccccCCCCCEEEEEeEEeecCchhhhcccCchhHHHHHHHHHHHHhhcccCC
Confidence 478999999998764 2 347888874 67999 89999721 100 0001
Q ss_pred CCceEEEeccCCCcceEEEEEeecCCCce--EE-----eccccccccCCCCCCE-EEEEe--CcEEEEEEEcCCCCCCcc
Q 019834 90 KNYQIWWSLADSKYAGTALLVKKCFQPKK--VS-----FSLEKTALKYEPDGRV-ILAEF--ETFYLLNTYAPNNGWKEE 159 (335)
Q Consensus 90 ~~y~~~~~~~~~~~~Gvailsr~~l~~~~--~~-----~~~~~~~~~~~~~~r~-i~~~~--~~~~i~~~y~~~~~~~~~ 159 (335)
..|..+.+ ......+++|++|.++.+.. +. .++. ......|.+ +.+.+ ..+.++|+|+.++...
T Consensus 100 ~~Y~~v~s-~~l~g~~L~Vfvr~~~~~~i~~v~~~~v~tG~~---g~~gnKGav~vr~~~~~~~l~fvn~HLaa~~~~-- 173 (347)
T 1i9z_A 100 PGYVQLRS-GQLVGTALMIFCKESCLPSIKNVEGTVKKTGLG---GVSGNKGAVAIRFDYEDTGLCFITSHLAAGYTN-- 173 (347)
T ss_dssp CCEEEEEE-EEETTEEEEEEEEGGGGGGEEEEEEEEEECCCC-------CCEEEEEEEEETTEEEEEEEEECCCCSSC--
T ss_pred CceeEEEE-eeccceEEEEEEehHhhhhccceeeeeEeccCC---CccCCCceEEEEEEECCeEEEEEEecCCCCCcc--
Confidence 23433322 22234578889999864321 11 1111 011223322 34444 3699999999987742
Q ss_pred hhhHHHHHHHHHHHHHHHHh------cCCCCEEEEccCCCC
Q 019834 160 ENSFQRRRKWDKRIQEFVLQ------CSGKPLIWCGDLNVS 194 (335)
Q Consensus 160 ~~~~~~r~~~~~~l~~~l~~------~~~~p~Il~GDFN~~ 194 (335)
..+|...+..+...+.- ....++|++||||..
T Consensus 174 ---~~~R~~d~~~I~~~l~f~~~~~i~~~d~v~~~GDlNyR 211 (347)
T 1i9z_A 174 ---YDERDHDYRTIASGLRFRRGRSIFNHDYVVWFGDFNYR 211 (347)
T ss_dssp ---HHHHHHHHHHHHHHCCCGGGCCTTSSSEEEEEEECCCC
T ss_pred ---HHHHHHHHHHHHHhhccCcccccccCccEEEecccccc
Confidence 23355555555554320 234789999999954
No 30
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens}
Probab=99.31 E-value=1.4e-11 Score=113.96 Aligned_cols=148 Identities=18% Similarity=0.212 Sum_probs=81.2
Q ss_pred CCccEEEEEecccchhhhcCChhHHHHHHh----hcCCcE--EEEeccccc-------cCCCCCCCceEEEeccCCCcce
Q 019834 39 KDPLKFVTWNANSLLLRVKNNWPEFSNFIT----TFDPDV--IALQILMRA-------LSSPPFKNYQIWWSLADSKYAG 105 (335)
Q Consensus 39 ~~~lrI~swNv~~~~~~~~~~~~~l~~~i~----~~~~DI--v~LQEv~~~-------~~~~~~~~y~~~~~~~~~~~~G 105 (335)
.-.+.|+||||++..... ..|.+++. ...||| |+|||+... +.+..-..|..+.+ ...+..+
T Consensus 25 ~l~i~v~TwNv~g~~~~~----~~L~~~l~~~~~~~~pDI~viGlQEi~~~~~~W~~~l~~~L~~~Y~~v~s-~~l~g~~ 99 (357)
T 2xsw_A 25 NVALFVATWNMQGQKELP----PSLDEFLLPAEADYAQDLYVIGVQEGCSDRREWETRLQETLGPHYVLLSS-AAHGVLY 99 (357)
T ss_dssp EEEEEEEEEECTTCSSCC----SCCHHHHSCTTCCSCCSEEEEEEESCCSCHHHHHHHHHHHHCTTEEEEEE-EEETTEE
T ss_pred CceEEEEEEecCCCCCCc----ccHHHHhccccccCCCCEEEEEeeeccchHHHHHHHHHHHhCCcccchhh-hhhhhEE
Confidence 346899999999864332 23555553 356996 889998521 11111134543332 2234456
Q ss_pred EEEEEeecCCCc----eEEeccccccccCCCCCCE-EEEEe--CcEEEEEEEcCCCCCCcchhhHHHHHHHHHHHHHHHH
Q 019834 106 TALLVKKCFQPK----KVSFSLEKTALKYEPDGRV-ILAEF--ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVL 178 (335)
Q Consensus 106 vailsr~~l~~~----~~~~~~~~~~~~~~~~~r~-i~~~~--~~~~i~~~y~~~~~~~~~~~~~~~r~~~~~~l~~~l~ 178 (335)
++|++|.++.+. .....-.........+|.+ +.+.+ ..+.++|+|+.++... ..+|...+..+...+.
T Consensus 100 l~Vfvr~~~~~~i~~v~~~~v~tG~~g~~gNKGav~vr~~~~~t~~~Fvn~HLaa~~~~-----~~~Rn~d~~~I~~~l~ 174 (357)
T 2xsw_A 100 MSLFIRRDLIWFCSEVECSTVTTRIVSQIKTKGALGISFTFFGTSFLFITSHFTSGDGK-----VAERLLDYTRTVQALV 174 (357)
T ss_dssp EEEEEEGGGGGGBBCCEEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEECCCSTTC-----HHHHHHHHHHHHHHCC
T ss_pred EEEEEchHHhhcCceeEecccccccccccccccEEEEEEEECCeEEEEEEEccCCCCch-----HHHHHHHHHHHHHHhc
Confidence 889999875321 1111000000011122322 33344 3689999999998732 3446566666655442
Q ss_pred h------------------cCCCCEEEEccCCCCCC
Q 019834 179 Q------------------CSGKPLIWCGDLNVSHE 196 (335)
Q Consensus 179 ~------------------~~~~p~Il~GDFN~~~~ 196 (335)
- .....+|++||||....
T Consensus 175 f~~~~~~~~~~~~~~~~~~~~~d~vfw~GDlNyRi~ 210 (357)
T 2xsw_A 175 LPRNVPDTNPYRSSAADVTTRFDEVFWFGDFNFRLS 210 (357)
T ss_dssp CCSSSCCSSGGGCBTTBGGGSSSEEEEEEECCCCBS
T ss_pred ccccccccccccccccccccccceEEEecccCcccc
Confidence 1 02368999999997554
No 31
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens} PDB: 3n9v_A
Probab=99.03 E-value=8.7e-09 Score=93.03 Aligned_cols=144 Identities=18% Similarity=0.151 Sum_probs=79.1
Q ss_pred ccEEEEEecccchhhhcCChhHHHHHHhh--cCCc--EEEEeccccc----cCC-------------CCC---CCceEEE
Q 019834 41 PLKFVTWNANSLLLRVKNNWPEFSNFITT--FDPD--VIALQILMRA----LSS-------------PPF---KNYQIWW 96 (335)
Q Consensus 41 ~lrI~swNv~~~~~~~~~~~~~l~~~i~~--~~~D--Iv~LQEv~~~----~~~-------------~~~---~~y~~~~ 96 (335)
++.|+||||+|.... ..|.++|.. ..|| ||+|||+... +.. ..+ ..|..+.
T Consensus 9 ~i~v~TwNvng~~~~-----~~l~~wL~~~~~~pDI~viGlQE~~l~~~~~~~~~~~~~~~W~~~i~~~L~~~~~Y~~v~ 83 (313)
T 3mtc_A 9 RFFAGTYNVNGQSPK-----ECLRLWLSNGIQAPDVYCVGFQELDLSKEAFFFHDTPKEEEWFKAVSEGLHPDAKYAKVK 83 (313)
T ss_dssp EEEEEEEECTTCCCC-----SCTHHHHSSSCCCCSEEEEEEECSCCSHHHHTTCCCHHHHHHHHHHHHHSCTTSCEEEEE
T ss_pred EEEEEEEEcCCccCc-----hhHHHHhcccCCCCCeEEEEEEecccchhhhcccCcchHHHHHHHHHHhcCCCCCEEEEE
Confidence 567899999997542 357788875 6799 7999998421 000 011 1354443
Q ss_pred eccCCCcceEEEEEeecCCCce----EE-eccccccccCCCCCCE-EEEEe--CcEEEEEEEcCCCCCCcchhhHHHHHH
Q 019834 97 SLADSKYAGTALLVKKCFQPKK----VS-FSLEKTALKYEPDGRV-ILAEF--ETFYLLNTYAPNNGWKEEENSFQRRRK 168 (335)
Q Consensus 97 ~~~~~~~~Gvailsr~~l~~~~----~~-~~~~~~~~~~~~~~r~-i~~~~--~~~~i~~~y~~~~~~~~~~~~~~~r~~ 168 (335)
+ .....--+.|+.|..+.+.. .. ...+ .......+|.+ +.+.+ ..+.++|+|+.++.. ...+|..
T Consensus 84 s-~~lvGl~l~Vfvr~~~~~~i~~v~~~~v~tG-~~g~~GNKGaV~ir~~~~~ts~cFVnsHLaA~~~-----~~~~Rn~ 156 (313)
T 3mtc_A 84 L-IRLVGIMLLLYVKQEHAAYISEVEAETVGTG-IMGRMGNKGGVAIRFQFHNTSICVVNSHLAAHIE-----EYERRNQ 156 (313)
T ss_dssp E-EEETTEEEEEEEEGGGGGGEEEEEEEEEECS-GGGTSTTSEEEEEEEEETTEEEEEEEEECCCSGG-----GHHHHHH
T ss_pred E-echhhhhhhhhhhhhhhhhcceeEeeeeccc-ccccccCCceEEEEEEECCcEEEEEeeccCCCch-----HHHHHHH
Confidence 2 11112234577787743321 11 1111 01122334433 44444 368899999998873 3445555
Q ss_pred HHHHHHHHHHh------------cCCCCEEEEccCCCCCC
Q 019834 169 WDKRIQEFVLQ------------CSGKPLIWCGDLNVSHE 196 (335)
Q Consensus 169 ~~~~l~~~l~~------------~~~~p~Il~GDFN~~~~ 196 (335)
.+..+...+.- .....++++||||-.-.
T Consensus 157 d~~~I~~~l~f~~~~~~~~~~~i~~~d~vfw~GDLNyRi~ 196 (313)
T 3mtc_A 157 DYKDICSRMQFCQPDPSLPPLTISNHDVILWLGDLNYRIE 196 (313)
T ss_dssp HHHHHHHHCCBCCSCSSSCCBCTTSSSEEEEEEECCCCBC
T ss_pred HHHHHHHhcccCCCCCccCCccccCCceEEEecccccccc
Confidence 55555554321 02245999999997543
No 32
>4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling, structural genomics consortium stockholm, magnesium binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB: 3nr8_B*
Probab=98.81 E-value=5.9e-08 Score=87.80 Aligned_cols=146 Identities=19% Similarity=0.155 Sum_probs=76.7
Q ss_pred CCccEEEEEecccchhhhcCChhHHHHHHhh-------------cCCcEE--EEeccccc-----------cCCCCCCCc
Q 019834 39 KDPLKFVTWNANSLLLRVKNNWPEFSNFITT-------------FDPDVI--ALQILMRA-----------LSSPPFKNY 92 (335)
Q Consensus 39 ~~~lrI~swNv~~~~~~~~~~~~~l~~~i~~-------------~~~DIv--~LQEv~~~-----------~~~~~~~~y 92 (335)
.-++-|.||||+|... . ..|.++|.- ..|||+ +|||+... +.......|
T Consensus 7 ~i~i~vgTwNv~g~~p-~----~~L~~wl~~~~~~~~~~~~~~~~~~DiyviG~QE~~~~~~~W~~~i~~~L~~~~~~~Y 81 (316)
T 4a9c_A 7 MISVFIGTWNMGSVPP-P----KNVTSWFTSKGLGKTLDEVTVTIPHDIYVFGTQENSVGDREWLDLLRGGLKELTDLDY 81 (316)
T ss_dssp EEEEEEEEEECTTSCC-C----SCCHHHHTTCSEEECCCTTGGGSCCSEEEEEEESCCSCHHHHHHHHHHHHHHHHSCCC
T ss_pred eEEEEEEEeEcCCcCC-C----cchhHhhcccccccCcccccccCCCcEEEEeccccccchhHHHHHHHHHhccccCCCE
Confidence 3467889999998533 2 346777752 347987 89998311 110001246
Q ss_pred eEEEeccCCCcceEEEEEeecCCCceEEecc---cccc-ccCCCCCCE-EEEEe--CcEEEEEEEcCCCCCCcchhhHHH
Q 019834 93 QIWWSLADSKYAGTALLVKKCFQPKKVSFSL---EKTA-LKYEPDGRV-ILAEF--ETFYLLNTYAPNNGWKEEENSFQR 165 (335)
Q Consensus 93 ~~~~~~~~~~~~Gvailsr~~l~~~~~~~~~---~~~~-~~~~~~~r~-i~~~~--~~~~i~~~y~~~~~~~~~~~~~~~ 165 (335)
..+.+ .....-.++|+.|.++.+....... .... .....+|.+ +.+.+ ..+.++|+|+.++.. .+.+
T Consensus 82 ~~v~s-~~L~gi~l~Vfvk~~~~~~I~~v~~~~v~tG~~g~~GNKGaV~ir~~~~~ts~~FVn~HLaAg~~-----~~~~ 155 (316)
T 4a9c_A 82 RPIAM-QSLWNIKVAVLVKPEHENRISHVSTSSVKTGIANTLGNKGAVGVSFMFNGTSFGFVNCHLTSGNE-----KTAR 155 (316)
T ss_dssp EEEEE-EEETTEEEEEEECGGGGGGEEEEEEEEEEEC------CEEEEEEEEEETTEEEEEEEEECCCSTT-----CHHH
T ss_pred EEEEe-eeehheeeeeEEeHHHhhhCcccccceeeeeeeEecCCCceEEEEEEECCcEEEEEEeccccCch-----HHHH
Confidence 54433 1223446788889875432111110 0000 112223333 34444 369999999998774 2344
Q ss_pred HHHHHHHHHHHHH-------hc----CCCCEEEEccCCCCC
Q 019834 166 RRKWDKRIQEFVL-------QC----SGKPLIWCGDLNVSH 195 (335)
Q Consensus 166 r~~~~~~l~~~l~-------~~----~~~p~Il~GDFN~~~ 195 (335)
|.+.+..+...+. .. ....++++||||-.-
T Consensus 156 Rn~d~~~I~~~l~f~~~~~~~~d~~~~~d~vfw~GDLNyRi 196 (316)
T 4a9c_A 156 RNQNYLDILRLLSLGDRQLNAFDISLRFTHLFWFGDLNYRL 196 (316)
T ss_dssp HHHHHHHHHHHCCC-------CCTTTTSSEEEEEEECCCCB
T ss_pred HHHHHHHHHHhCCCCCCCcCccccCCcCCeEEEcCCccCCc
Confidence 5554555444321 00 113589999999754
No 33
>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp}
Probab=39.45 E-value=18 Score=31.28 Aligned_cols=45 Identities=11% Similarity=0.206 Sum_probs=24.7
Q ss_pred CCCCccEEEEEecccchhhhcCChhHHHHHHh---hcCCcEEEEeccc
Q 019834 37 SKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT---TFDPDVIALQILM 81 (335)
Q Consensus 37 ~~~~~lrI~swNv~~~~~~~~~~~~~l~~~i~---~~~~DIv~LQEv~ 81 (335)
+....|||+..-.+-.......+...+.++|. +.++|+|+|.|..
T Consensus 16 ~~~~~~kva~~Q~~~~~~d~~~Nl~~~~~~i~~A~~~gadlvvfPE~~ 63 (281)
T 3p8k_A 16 PRGSHMKVQIYQLPIVFGDSSKNETQITQWFEKNMNAEVDVVVLPEMW 63 (281)
T ss_dssp CTTSEEEEEEEECCCCTTCHHHHHHHHHHHHHHHCCTTCCEEECCSST
T ss_pred ccCCCcEEEEEeccCCcCCHHHHHHHHHHHHHHHHhCCCcEEEcCCCc
Confidence 34456777665443211111222244555554 4589999999973
No 34
>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP}
Probab=33.90 E-value=24 Score=30.55 Aligned_cols=42 Identities=10% Similarity=0.143 Sum_probs=23.1
Q ss_pred CCCccEEEEE--ecccchhhhcCChhHHHHHHh---hcCCcEEEEeccc
Q 019834 38 KKDPLKFVTW--NANSLLLRVKNNWPEFSNFIT---TFDPDVIALQILM 81 (335)
Q Consensus 38 ~~~~lrI~sw--Nv~~~~~~~~~~~~~l~~~i~---~~~~DIv~LQEv~ 81 (335)
...+|||+.. |+.-. ....+...+.+.+. +.++|+|+|.|..
T Consensus 17 ~~~~~rva~~Q~~~~~~--d~~~N~~~~~~~i~~A~~~gadlvvfPE~~ 63 (283)
T 3hkx_A 17 RGSHMRIALMQHTARPL--DPQHNLDLIDDAAARASEQGAQLLLTPELF 63 (283)
T ss_dssp TTEEEEEEEEEBCCCTT--CHHHHHHHHHHHHHHHHHTTCSEEECCTTG
T ss_pred cCCccEEEEEeCCCCCC--CHHHHHHHHHHHHHHHHHCCCCEEEcCCCc
Confidence 4445666664 55311 11112234444444 5589999999973
Done!