Query 019836
Match_columns 335
No_of_seqs 147 out of 1020
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 04:55:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019836.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019836hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02491 carotenoid 9,10(9',10 100.0 5.3E-88 1.1E-92 676.5 37.6 334 1-335 212-545 (545)
2 PLN02258 9-cis-epoxycarotenoid 100.0 9.3E-83 2E-87 640.4 36.1 310 1-332 275-589 (590)
3 COG3670 Lignostilbene-alpha,be 100.0 8.6E-82 1.9E-86 597.8 29.3 309 2-327 170-489 (490)
4 PF03055 RPE65: Retinal pigmen 100.0 2.9E-78 6.2E-83 604.1 27.2 309 2-326 156-486 (486)
5 PLN02969 9-cis-epoxycarotenoid 100.0 1E-72 2.2E-77 573.2 34.9 302 10-325 254-609 (610)
6 KOG1285 Beta, beta-carotene 15 100.0 6.6E-47 1.4E-51 375.9 20.0 309 1-332 269-581 (582)
7 KOG1285 Beta, beta-carotene 15 99.5 4.3E-14 9.4E-19 141.7 12.7 203 3-213 179-413 (582)
8 PF02239 Cytochrom_D1: Cytochr 55.1 92 0.002 30.2 9.5 74 205-312 46-119 (369)
9 PF09843 DUF2070: Predicted me 38.7 37 0.0008 29.4 3.5 51 249-304 38-88 (179)
10 PF06433 Me-amine-dh_H: Methyl 34.7 4.3E+02 0.0093 25.5 17.0 37 277-315 250-291 (342)
11 TIGR02276 beta_rpt_yvtn 40-res 30.7 1.3E+02 0.0028 18.3 4.6 28 289-319 12-39 (42)
12 PF02239 Cytochrom_D1: Cytochr 26.1 1E+02 0.0022 29.9 4.6 31 278-313 329-359 (369)
13 PF14839 DOR: DOR family 25.7 40 0.00086 30.3 1.5 14 272-285 3-16 (216)
14 PF08262 Lem_TRP: Leucophaea m 23.7 34 0.00073 15.3 0.3 6 317-322 4-9 (10)
No 1
>PLN02491 carotenoid 9,10(9',10')-cleavage dioxygenase
Probab=100.00 E-value=5.3e-88 Score=676.49 Aligned_cols=334 Identities=81% Similarity=1.341 Sum_probs=295.0
Q ss_pred CCCCCCCCCCCCCCCCcccCCCCcEEEEEeecCCCcEEEEEEcCCCCeEeeEEEecCCcccccccccCCCEEEEeeCCee
Q 019836 1 MLDYDKRLNHPFTAHPKIDPYTDEMFTFGYTQTPPYVTYRVISKDGFMHDPVPITMSAPIMMHDFAITENYAIFLDLPMC 80 (335)
Q Consensus 1 ~~d~~~~l~~~ftAHPk~Dp~tG~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~p~~~~iHDfavTeny~V~~~~P~~ 80 (335)
++||+|.|..+||||||+||.||||+||||+..+++++|++++++|++.+.+++++|.++|||||||||||+||+++|+.
T Consensus 212 ~~df~g~l~~~~TAHPk~DP~TGel~~fgy~~~~p~~~y~~~~~~G~~~~~v~i~l~~~~~~HDFaiTeny~Vf~~~Pl~ 291 (545)
T PLN02491 212 LLDYDKRLKHSFTAHPKVDPFTGEMFTFGYSHEPPYITYRVISKDGAMHDPVPITISEPIMMHDFAITENYAIFMDLPLY 291 (545)
T ss_pred ecccCCccCcccccCccCcCCCCCEEEEEecCCCCcEEEEEECCCCcCcceeEeecCCCceeeeeEecCCEEEEEECCcc
Confidence 36899999889999999999999999999998778999999999999999999999999999999999999999999999
Q ss_pred ecHHHHHhcCceeeEEcCCCCcEEEEEeCCCCCCCceEEEEcCCeeEEcCccceecCCCeEEEEEEecCCCCCccCCCCc
Q 019836 81 FRQKEMVKENKLIYAFDPTIKARFGVLPRYARDDLQIRWFELPNCYIFHNANAWEEEEDEVVLITCRVRNPDLDMFNGPL 160 (335)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~~vipR~~~~~~~v~~~~~~~~f~fH~~NA~E~~d~~ivvd~~~~~~~~~~~~~~~~ 160 (335)
+++.+|+++++.++.|+|++++||+||||++++.+.++||++|+||+||++||||++ |+||+|.|+++++++....+..
T Consensus 292 ~~~~~~~~~~~~~~~~d~~~~~r~gVipR~~~~~~~irw~e~~~~f~fH~~NA~Ee~-~~Ivvd~~~~~~~~~~~~~~~~ 370 (545)
T PLN02491 292 FRPKEMVKEKKFIYTFDATKKARFGVLPRYAKDELMIRWFELPNCFIFHNANAWEEE-DEVVLITCRLENPDLDMVNGKV 370 (545)
T ss_pred cCHHHHhhCCCceeEECCCCCcEEEEEECCCCCCCceEEEEcCCceEeecCCccccC-CeEEEEEeccCCCccccccccc
Confidence 999999887778899999999999999998755568999999999999999999988 8999999999876543222222
Q ss_pred cccccCCcceEEEEEEeCCCCceeEEecCCCCccCcccCCCCCCCcccEEEeeecCCCCCcCeEEEEeccCCCcccceee
Q 019836 161 KETLEDQTTELYEMRFNMKTGLASQKKLSPACVDFPRINEHYMGRKQRYVYGSILENIAKVTGMIKFDLRAEPETGKTKL 240 (335)
Q Consensus 161 ~~~~~~~~~~l~R~~idl~~g~~~~~~l~~~~~EfP~in~~~~g~~~ry~Y~~~~~~~~~~~~l~k~D~~~~~~~~~~~~ 240 (335)
.+......++|+||||||++|+++++.|++.++|||+||+++.||+|||+|++..+....+++|+|+|+++++.+++.+.
T Consensus 371 ~~~~~~~~~~l~r~ridl~tg~~~~~~l~~~~~EfP~In~~~~Grk~ry~Y~~~~~~~~~~~gl~K~D~~t~~~~g~~~~ 450 (545)
T PLN02491 371 KEKLENFGNELYEMRFNMKTGAASQKKLSASAVDFPRVNESYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPETGKKKL 450 (545)
T ss_pred cccccccCceEEEEEEECCCCceeeeccCCcccccCccCHHHCCCcccEEEEeccCCccCcCeEEEEEecccccCCcccc
Confidence 22222346899999999999999999999999999999999999999999999877666789999999997543344333
Q ss_pred ecCCceeeEEEcCCCCcccccEEeeCCCCCCCCCCCcEEEEEEEeCCCCceEEEEEeCCCCCCCceEEEEcCCcCCCCcc
Q 019836 241 EVGGNVKGIFDLGPGRFGSEAVFVPREPSSTSEEDDGYLIFHVHDENTGKSAVYVIDAKTMSADPVAVIELPHRVPYGFH 320 (335)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~EPvFVPr~~~~~~~EdDG~lL~~v~d~~~~~s~L~IlDA~~l~~gPVAr~~LP~~iP~GfH 320 (335)
+.+++..+.|++|+++|+|||+||||+++++++|||||||++|+|..+++|+|+||||++|++|||||++||+|||+|||
T Consensus 451 ~~~~~~~~~~~~g~~~~~~EPvFVPr~~~~~~~EDDG~ll~~V~d~~~~~S~l~VlDAk~~~~~pVA~v~LP~rVP~GfH 530 (545)
T PLN02491 451 EVGGNVKGIFDLGPGRFGSEAIFVPREPGTTSEEDDGYLIFFVHDENTGKSSVNVIDAKTMSADPVAVVELPHRVPYGFH 530 (545)
T ss_pred ccccceeEEEEcCCCccccCCEEecCCCCCCcccCCcEEEEEEEcCCCCcceEEEEeCCCCCCCeeEEEECCCCCCCCcc
Confidence 33444456899999999999999999754225899999999999999999999999999999999999999999999999
Q ss_pred ccccChhhHHHhhcC
Q 019836 321 GIFLSEEQLEELAKL 335 (335)
Q Consensus 321 G~w~~~~~~~~~~~~ 335 (335)
|+|+++++|.+|+.+
T Consensus 531 G~fv~~~~l~~~~~~ 545 (545)
T PLN02491 531 AFFVTEEQLQEQAKL 545 (545)
T ss_pred ccCcCHHHHHHhhcC
Confidence 999999999998754
No 2
>PLN02258 9-cis-epoxycarotenoid dioxygenase NCED
Probab=100.00 E-value=9.3e-83 Score=640.40 Aligned_cols=310 Identities=40% Similarity=0.723 Sum_probs=276.6
Q ss_pred CCCCCCCCCCCCCCCCcccCCCCcEEEEEeecC-CCcEEEEEEcCCCCeEeeEEEecCCcccccccccCCCEEEEeeCCe
Q 019836 1 MLDYDKRLNHPFTAHPKIDPYTDEMFTFGYTQT-PPYVTYRVISKDGFMHDPVPITMSAPIMMHDFAITENYAIFLDLPM 79 (335)
Q Consensus 1 ~~d~~~~l~~~ftAHPk~Dp~tG~~~~~g~~~~-~~~~~~~~~~~~g~~~~~~~~~~p~~~~iHDfavTeny~V~~~~P~ 79 (335)
++||+|.|..+||||||+||.||||+||||+.. +++++|+++|++|++.+.+++++|.++|||||||||||+||+++|+
T Consensus 275 ~~df~g~l~~~ftAHPKvDP~TGel~~f~y~~~~~p~l~~~~~d~~G~~~~~~~i~lp~p~~~HDFaiTenY~Vf~d~Pl 354 (590)
T PLN02258 275 RYDFDGQLDSSMIAHPKVDPVTGELFALSYDVVKKPYLKYFRFSPDGEKSPDVEIPLDQPTMMHDFAITENFVVIPDQQV 354 (590)
T ss_pred ccccCCccCcccccCceEcCCCCeEEEEEEeccCCCcEEEEEECCCCCEEeeEEeeCCCCccccceeccCceEEEEccCc
Confidence 368999998899999999999999999999854 5889999999999999999999999999999999999999999999
Q ss_pred eecHHHHHhcCceeeEEcCCCCcEEEEEeCCCCCCCceEEEEcCCeeEEcCccceecC-CCeEEEEEEecCCCCCccCCC
Q 019836 80 CFRQKEMVKENKLIYAFDPTIKARFGVLPRYARDDLQIRWFELPNCYIFHNANAWEEE-EDEVVLITCRVRNPDLDMFNG 158 (335)
Q Consensus 80 ~~~~~~~l~~~~~~~~~~~~~~~~~~vipR~~~~~~~v~~~~~~~~f~fH~~NA~E~~-d~~ivvd~~~~~~~~~~~~~~ 158 (335)
.+|+.+|+.| +.++.|+|++++||+||||++++.+.++||++|+||+||++||||++ +++||+|.|++.++...+ .
T Consensus 355 ~~~~~~~~~g-~~~~~~d~~~~srfgVipR~~~~~~~irwfe~p~~f~fH~~NA~Ee~~~~~VVvd~~~~~~~~~~~-~- 431 (590)
T PLN02258 355 VFKLSEMIRG-GSPVVYDKNKTSRFGVLPKNATDASEIQWVEVPDCFCFHLWNAWEEPETDEVVVIGSCMTPPDSIF-N- 431 (590)
T ss_pred eEcHHHHhhC-CCceEECCCCCcEEEEEECCCCCCCceEEEecCCcEEEecccccccCCCCeEEEEEecccChhhhc-c-
Confidence 9999999875 47899999999999999999765578999999999999999999974 367999999987643211 0
Q ss_pred CccccccCCcceEEEEEEeCCCCceeEEecCC---CCccCcccCCCCCCCcccEEEeeecCCCCCcCeEEEEeccCCCcc
Q 019836 159 PLKETLEDQTTELYEMRFNMKTGLASQKKLSP---ACVDFPRINEHYMGRKQRYVYGSILENIAKVTGMIKFDLRAEPET 235 (335)
Q Consensus 159 ~~~~~~~~~~~~l~R~~idl~~g~~~~~~l~~---~~~EfP~in~~~~g~~~ry~Y~~~~~~~~~~~~l~k~D~~~~~~~ 235 (335)
. ......++|+||||||++|+++++.+.+ .++|||+||+++.||+|||+|+++.++...+++|+|+|+++|+.
T Consensus 432 ~---~~~~~~~~L~r~ridl~tg~~~~~~l~~~~~~~~EFP~In~~~~Grk~Ry~Y~~~~~~~~~~~givK~Dl~tg~~- 507 (590)
T PLN02258 432 E---SDESLRSVLSEIRLNLRTGESTRRPIISGEQVNLEAGMVNRNLLGRKTRYAYLAIAEPWPKVSGFAKVDLSTGEV- 507 (590)
T ss_pred c---ccccccceEEEEEEECCCCceeeeEeecCCCcccccceECHHHCCCccceEEEeccCCCCCCCeEEEEECCCCcE-
Confidence 1 1123568999999999999998887755 79999999999999999999999877666789999999998763
Q ss_pred cceeeecCCceeeEEEcCCCCcccccEEeeCCCCCCCCCCCcEEEEEEEeCCCCceEEEEEeCCCCCCCceEEEEcCCcC
Q 019836 236 GKTKLEVGGNVKGIFDLGPGRFGSEAVFVPREPSSTSEEDDGYLIFHVHDENTGKSAVYVIDAKTMSADPVAVIELPHRV 315 (335)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~EPvFVPr~~~~~~~EdDG~lL~~v~d~~~~~s~L~IlDA~~l~~gPVAr~~LP~~i 315 (335)
+.|++|+++|++||+||||+++ +++|||||||++|+|..+++|+|+||||++|++ |||++||++|
T Consensus 508 ------------~~~~~g~g~~~gEPvFVPr~~~-~~~EDDGylls~V~d~~~~~SeL~IlDA~~l~~--VArv~LP~rV 572 (590)
T PLN02258 508 ------------KKYIYGEGRYGGEPFFVPRGSG-SEAEDDGYILAFVHDEEKGKSELQVVNAVNLEL--EATVKLPSRV 572 (590)
T ss_pred ------------EEEECCCCccccCCEeccCCCC-CcccCCcEEEEEEEECCCCceEEEEEeCCCCcc--cEEEECCCCC
Confidence 4699999999999999999753 335999999999999999999999999999984 9999999999
Q ss_pred CCCccccccChhhHHHh
Q 019836 316 PYGFHGIFLSEEQLEEL 332 (335)
Q Consensus 316 P~GfHG~w~~~~~~~~~ 332 (335)
|+||||+|+++.+|.+|
T Consensus 573 P~GFHG~wv~~~~l~~q 589 (590)
T PLN02258 573 PYGFHGTFISAEDLLKQ 589 (590)
T ss_pred CCcccccccCHHHHhhc
Confidence 99999999999999887
No 3
>COG3670 Lignostilbene-alpha,beta-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=8.6e-82 Score=597.76 Aligned_cols=309 Identities=39% Similarity=0.678 Sum_probs=270.0
Q ss_pred CCCCCC-CCCCCCCCCcccCCCCcEEEEEeecCCCcEEEEEEcCCCCeEeeEEEecCCcccccccccCCCEEEEeeCCee
Q 019836 2 LDYDKR-LNHPFTAHPKIDPYTDEMFTFGYTQTPPYVTYRVISKDGFMHDPVPITMSAPIMMHDFAITENYAIFLDLPMC 80 (335)
Q Consensus 2 ~d~~~~-l~~~ftAHPk~Dp~tG~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~p~~~~iHDfavTeny~V~~~~P~~ 80 (335)
.+|+|. +..+||||||+||+|||++||||++..++++|++++++|++++.+.+++|++.|||||++|+||+||+++|+.
T Consensus 170 ~~~~g~~~g~~fsAHPkvDp~tgel~~fg~s~~~~~l~~~~v~~~G~l~r~~~i~lpg~~~~HDFa~T~~y~If~~~Pv~ 249 (490)
T COG3670 170 EDFGGDPLGGPFSAHPKVDPDTGELFNFGYSFALPYLTYYVVDADGELRRTVDIPLPGPPMMHDFAITENYLIFFDLPVT 249 (490)
T ss_pred hhcCCCCCCCccccCccCCCCCceEEEEEeccCCCeeEEEEECCCCcEEEeeeeecCCCccceeeeecCceEEEEeCccc
Confidence 478874 4468999999999999999999999888999999999999999999999999999999999999999999999
Q ss_pred ecHHHHHhc---CceeeEEcCCCCcEEEEEeCCCCCCCceEEEEcCCeeEEcCccceecCCCeEEEEEEecCCCCCcc-C
Q 019836 81 FRQKEMVKE---NKLIYAFDPTIKARFGVLPRYARDDLQIRWFELPNCYIFHNANAWEEEEDEVVLITCRVRNPDLDM-F 156 (335)
Q Consensus 81 ~~~~~~l~~---~~~~~~~~~~~~~~~~vipR~~~~~~~v~~~~~~~~f~fH~~NA~E~~d~~ivvd~~~~~~~~~~~-~ 156 (335)
+|+...+.+ ...++.|+|+.|+||+||||.+ + +++||||+|+||+||+.||||++|+.|.+|.|+++++.... .
T Consensus 250 ~d~~p~ll~~~~~~~~~~~~pe~ptri~V~pR~g-~-~~irwfE~~p~fvfH~~NAye~~d~~v~~d~~~~~~~~~~~~~ 327 (490)
T COG3670 250 FDPVPRLLGRPADGHAMRWRPELPTRILVLPREG-D-SEIRWFEAEPGFVFHFLNAYEEGDEVVLVDFLRYDDFSQTLDT 327 (490)
T ss_pred ccchhHHhcCcccccceeecCCCCcEEEEEccCC-C-CceeEEecCCeEEEEecceeecCCCcEEEEEEeeccccccccc
Confidence 996433333 2357999999999999999996 3 68999999999999999999998788999999998763211 1
Q ss_pred CCCcccc--ccCCcceEEEEEEeCCCCceeEEecCCCCccCcccCCCCCCCcccEEEeeecCC-CCC---cCeEEEEecc
Q 019836 157 NGPLKET--LEDQTTELYEMRFNMKTGLASQKKLSPACVDFPRINEHYMGRKQRYVYGSILEN-IAK---VTGMIKFDLR 230 (335)
Q Consensus 157 ~~~~~~~--~~~~~~~l~R~~idl~~g~~~~~~l~~~~~EfP~in~~~~g~~~ry~Y~~~~~~-~~~---~~~l~k~D~~ 230 (335)
.+..... ....+++|+||+|||++|++.++.+.+++||||+||+++.|++|||+|++...+ ... ++.|+|+|++
T Consensus 328 ~~~~~~g~~~~~a~~~L~R~~lnl~tg~v~~~~~~~r~~EFP~in~~~~G~p~RY~Y~~~~rp~~~l~~g~~~l~k~D~~ 407 (490)
T COG3670 328 LGEGPGGDFRTLAPPRLHRWTLNLKTGKVAEEQLDDRACEFPRINPRYVGQPYRYTYMSGARPGTFLFQGLQTLAKHDLE 407 (490)
T ss_pred ccccccccccccCCCcceEEEEccccchhHHHhhhhhhcccCccChhhcCCceEEEEEecccCCccchhhcceeEEEecc
Confidence 1111111 112379999999999999999899999999999999999999999999997664 223 4559999999
Q ss_pred CCCcccceeeecCCceeeEEEcCCCCcccccEEeeCCCCCCCCCCCcEEEEEEEeCCCCceEEEEEeCCCCCCCceEEEE
Q 019836 231 AEPETGKTKLEVGGNVKGIFDLGPGRFGSEAVFVPREPSSTSEEDDGYLIFHVHDENTGKSAVYVIDAKTMSADPVAVIE 310 (335)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~EPvFVPr~~~~~~~EdDG~lL~~v~d~~~~~s~L~IlDA~~l~~gPVAr~~ 310 (335)
|++. +.+++++++|++||+||||+ | ++.|||||||++|||.+.++|+|+||||+++++|||||++
T Consensus 408 tg~~-------------~~~~~g~~~y~~E~vfvPrp-g-~~~EdDGwLl~~vyd~~~~~Sel~v~DA~~~~~epIa~l~ 472 (490)
T COG3670 408 TGTS-------------QVYSFGPRGYGSEPVFVPRP-G-SSAEDDGWLLTLVYDGDRHASELLVFDAQRVTAEPIARLA 472 (490)
T ss_pred CCcE-------------EEEecCCCCcccccccccCC-C-CCcCCCcEEEEEEEecCCCcceEEEEecccCCCCcceEEe
Confidence 8874 57999999999999999996 4 5689999999999999999999999999999999999999
Q ss_pred cCCcCCCCccccccChh
Q 019836 311 LPHRVPYGFHGIFLSEE 327 (335)
Q Consensus 311 LP~~iP~GfHG~w~~~~ 327 (335)
||++||+||||+|++..
T Consensus 473 Lp~~vP~gfHG~w~~~~ 489 (490)
T COG3670 473 LPQRVPYGFHGNWVPTE 489 (490)
T ss_pred ccccccccccccccccc
Confidence 99999999999999864
No 4
>PF03055 RPE65: Retinal pigment epithelial membrane protein; InterPro: IPR004294 Carotenoids such as beta-carotene, lycopene, lutein and beta-cryptoxanthine are produced in plants and certain bacteria, algae and fungi, where they function as accessory photosynthetic pigments and as scavengers of oxygen radicals for photoprotection. They are also essential dietary nutrients in animals. Carotenoid oxygenases cleave a variety of carotenoids into a range of biologically important products, including apocarotenoids in plants that function as hormones, pigments, flavours, floral scents and defence compounds, and retinoids in animals that function as vitamins, visual pigments and signalling molecules []. Examples of carotenoid oxygenases include: Beta-carotene-15,15'-monooxygenase (BCDO1; 1.14.99.36 from EC) from animals, which cleaves beta-carotene symmetrically at the central double bond to yield two molecules of retinal []. Beta-carotene-9',10'-dioxygenase (BCDO2) from animals, which cleaves beta-carotene asymmetrically to apo-10'-beta-carotenal and beta-ionone, the latter being converted to retinoic acid. Lycopene is also oxidatively cleaved []. 9-cis-epoxycarotenoid dioxygenase from plants, which cleaves 9-cis xanthophylls to xanthoxin, a precursor of the hormone abscisic acid []. Apocarotenoid-15,15'-oxygenase from bacteria and cyanobacteria, which converts beta-apocarotenals rather than beta-carotene into retinal. This protein has a seven-bladed beta-propeller structure with four hisitidines that hold the iron active centre []. Retinal pigment RPE65 from animals, which in its soluble form binds all-trans retinol, and in its membrane-bound form binds all-trans retinyl esters. RPE65 is important for the production of 11-cis retinal during visual pigment regeneration []. ; PDB: 3NPE_A 2BIX_B 2BIW_A 3KVC_B 3FSN_B.
Probab=100.00 E-value=2.9e-78 Score=604.13 Aligned_cols=309 Identities=41% Similarity=0.741 Sum_probs=238.4
Q ss_pred CCCCCCCC-CCCCCCCcccCCCCcEEEEEeecCC---CcEEEEEEcCCCCeEeeEEE-ecCCcccccccccCCCEEEEee
Q 019836 2 LDYDKRLN-HPFTAHPKIDPYTDEMFTFGYTQTP---PYVTYRVISKDGFMHDPVPI-TMSAPIMMHDFAITENYAIFLD 76 (335)
Q Consensus 2 ~d~~~~l~-~~ftAHPk~Dp~tG~~~~~g~~~~~---~~~~~~~~~~~g~~~~~~~~-~~p~~~~iHDfavTeny~V~~~ 76 (335)
+||+|.|. ..||||||+||+||++||||++.++ +.+++++++++|++++..+. ++|.++|||||+|||||+||++
T Consensus 156 ~~~~~~l~~~~~tAHp~~Dp~tg~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iHdf~vT~~Y~V~~~ 235 (486)
T PF03055_consen 156 FDFDGKLPGQPFTAHPKIDPETGELYNFGYSLGPEGSPKLTVYEIDPDGKKIHRVPSFPLPRPSYIHDFAVTENYVVFPD 235 (486)
T ss_dssp EEGGGTSSTS---S--EEETTTTTEEEEEEECSSTTSEEEEEEEE-TTSEEEEEEEESCCCS-B-----EE-SSEEEEEE
T ss_pred ccccccccCcccccCceEcccCCcEEEEEEEeccCCCCcEEEEEEcCccceeEEeeeccCCCCcccccccccCceEEEEE
Confidence 57889998 5899999999999999999998654 68999999999988877776 8999999999999999999999
Q ss_pred CCeeecHHHHHhcCc--eeeEEcCCCCcEEEEEeCCCCCCCceEEEEcCCeeEEcCccceecCCC--eEEEEEEecCCCC
Q 019836 77 LPMCFRQKEMVKENK--LIYAFDPTIKARFGVLPRYARDDLQIRWFELPNCYIFHNANAWEEEED--EVVLITCRVRNPD 152 (335)
Q Consensus 77 ~P~~~~~~~~l~~~~--~~~~~~~~~~~~~~vipR~~~~~~~v~~~~~~~~f~fH~~NA~E~~d~--~ivvd~~~~~~~~ 152 (335)
+|+.+|+.+++.+.. .+++|+|+++++|+||||++++ ..++|+++|+||+||++||||++|| +||+|.|+|++..
T Consensus 236 ~P~~~~~~~~~~g~~~~~~~~~~p~~~t~~~VipR~~~~-~~v~~~~~~~~~~~H~~NAyE~~dg~~~iv~d~~~~~~~~ 314 (486)
T PF03055_consen 236 NPLRFDPERLLLGGSPIDCLKWDPERPTRFHVIPRDGGK-SPVRWFEAPPFFVFHFVNAYEDDDGGGEIVLDACRYDDPE 314 (486)
T ss_dssp -SEEE-HHHHHTTCCTGGCEEE-TTS-EEEEEEETTTSC-CCEEEEEETTCEEEEEEEEEEETTT-TEEEEEEEEECSSS
T ss_pred CCeEECHHHHhhCCcccceEEECCCCCeEEEEEECcCCC-ceeEEEecCChhhccccceeecCCCceEEEEEEeecCCcc
Confidence 999999999987542 6899999999999999999753 6799999999999999999999853 9999999998876
Q ss_pred CccCC--CCccc----cccCCcceEEEEEEeCC--CCceeEEecCCC-CccCcccCCCCCCCcccEEEeeecCC----CC
Q 019836 153 LDMFN--GPLKE----TLEDQTTELYEMRFNMK--TGLASQKKLSPA-CVDFPRINEHYMGRKQRYVYGSILEN----IA 219 (335)
Q Consensus 153 ~~~~~--~~~~~----~~~~~~~~l~R~~idl~--~g~~~~~~l~~~-~~EfP~in~~~~g~~~ry~Y~~~~~~----~~ 219 (335)
+.... +++.. ......++|+||+||+. +++++++.|++. ++|||+||+++.|++|||+|+++... ..
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~l~R~~idl~~~~~~~~~~~l~~~~~~EfP~in~~~~g~~~ry~Y~~~~~~~~~~~~ 394 (486)
T PF03055_consen 315 FLDSFYLDNLRPDGMDFNSDSPGRLRRYRIDLDSKTGRVSEEPLDDGNPCEFPRINPRYSGRPYRYVYAVGMDPERSPGF 394 (486)
T ss_dssp -CGCSCHHHHCC-HHHCCCS-EEEEEEEEEETT--TCEEEEEEEETTEEEEEEEE-GGGTTS--SEEEEEEECSCTS---
T ss_pred cccccchhcccccccccccCCCceEEEEEEccccccceeEHhHhccCCCcccceeCcccCCCcccEEEEEeecccCCcCc
Confidence 43211 11111 12346799999999999 888888888887 69999999999999999999877653 24
Q ss_pred CcCeEEEEeccCCCcccceeeecCCceeeEEEcCCCCcccccEEeeCCCCCCCCCCCcEEEEEEEeCCCCceEEEEEeCC
Q 019836 220 KVTGMIKFDLRAEPETGKTKLEVGGNVKGIFDLGPGRFGSEAVFVPREPSSTSEEDDGYLIFHVHDENTGKSAVYVIDAK 299 (335)
Q Consensus 220 ~~~~l~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~EPvFVPr~~~~~~~EdDG~lL~~v~d~~~~~s~L~IlDA~ 299 (335)
++++|+|+|+++++. +.|.++++++++||+||||++ +.+|||||||++|+|..+++|+|+||||+
T Consensus 395 ~~~~l~k~D~~tg~~-------------~~~~~~~~~~~~EpvFVPr~~--~~~EdDG~Ll~~v~~~~~~~s~l~VlDA~ 459 (486)
T PF03055_consen 395 PFNGLVKVDLETGEV-------------QRWSFGPGCFPGEPVFVPRPG--GAEEDDGYLLSVVYDSDTNRSELLVLDAK 459 (486)
T ss_dssp EEEEEEEEETTTTEE-------------EEEE-TTTEEE--EEEEE-TT--S-STT-EEEEEEEEETTTTCEEEEEEETT
T ss_pred CCCEEEEEecccccc-------------eEEECCCCceecceEeccCCC--CCCCCceEEEEEEEECCCCccEEEEEeCC
Confidence 589999999998763 479999999999999999964 46899999999999999999999999999
Q ss_pred CCCCCceEEEEcCCcCCCCccccccCh
Q 019836 300 TMSADPVAVIELPHRVPYGFHGIFLSE 326 (335)
Q Consensus 300 ~l~~gPVAr~~LP~~iP~GfHG~w~~~ 326 (335)
+|++|||||++||++||+||||+|+++
T Consensus 460 ~l~~GPvAr~~lP~~vP~gfHG~w~~~ 486 (486)
T PF03055_consen 460 DLEEGPVARVELPHRVPYGFHGSWVPE 486 (486)
T ss_dssp TTCE--EEEEEESS---S-SEEEEEE-
T ss_pred CCCcCceEEEECCCCCCCCccccccCC
Confidence 999999999999999999999999864
No 5
>PLN02969 9-cis-epoxycarotenoid dioxygenase
Probab=100.00 E-value=1e-72 Score=573.17 Aligned_cols=302 Identities=24% Similarity=0.413 Sum_probs=250.8
Q ss_pred CCCCCCCcccCCCCcEEEEEeecC-----CCcEEEEEEcCCCCeEeeEEEecCCcccccccccCCCEEEEeeCCeeecHH
Q 019836 10 HPFTAHPKIDPYTDEMFTFGYTQT-----PPYVTYRVISKDGFMHDPVPITMSAPIMMHDFAITENYAIFLDLPMCFRQK 84 (335)
Q Consensus 10 ~~ftAHPk~Dp~tG~~~~~g~~~~-----~~~~~~~~~~~~g~~~~~~~~~~p~~~~iHDfavTeny~V~~~~P~~~~~~ 84 (335)
.+||||||+||.||++++|++..+ .+.+++|++|++|++.+++++++|.++|||||+|||||+||+++|+++|+.
T Consensus 254 ~~ftAHpK~DP~tg~lv~f~~~~~~~~~~~~~~~~y~~d~~G~~~~~~~~~~p~~~~iHDfaiTeny~Vf~~~P~~~d~~ 333 (610)
T PLN02969 254 KRLLSHYKIDGRRNRLLVVTCNAEDMLLPRSNFTFYEFDADFKLVQRKEFKLDDHLMIHDWAFTDTHYVLLANRVKLDVP 333 (610)
T ss_pred ccccccCCcCCCCCCEEEEEeccccccCCCceeEEEEECCCCCEecceeecCCCcceeeeeeccCCEEEEEECceecCHH
Confidence 379999999999999999999752 368999999999999999999999999999999999999999999999998
Q ss_pred HHHh---cCc---eeeEEcCCCCc-EEEEEeCCCCCC-CceEE---EEcC-CeeEEcCccceecCC--C--eEEEEEEe-
Q 019836 85 EMVK---ENK---LIYAFDPTIKA-RFGVLPRYARDD-LQIRW---FELP-NCYIFHNANAWEEEE--D--EVVLITCR- 147 (335)
Q Consensus 85 ~~l~---~~~---~~~~~~~~~~~-~~~vipR~~~~~-~~v~~---~~~~-~~f~fH~~NA~E~~d--~--~ivvd~~~- 147 (335)
+++. |.. .+|+|+|++++ +|+||||++++. ..++| +++| +||+||++||||+++ | +|++|+|.
T Consensus 334 ~~l~~~~G~~~~~~~l~wdp~~~t~~~~VipR~~~~~~~~~~W~v~~e~~~~~f~fH~~NAfEe~~~~g~~~Ivvd~~~~ 413 (610)
T PLN02969 334 GSLLAMAGLSPMISALAVDPSRPSSPVYLLPRFPEKEAGGRDWRVPVEVPSQLWLIHVGNAYEERDDRGNLRIQLHASAC 413 (610)
T ss_pred HHHHHhhcCCCchheeEECCCCCccEEEEEECcCCCcccceeeeeEEeeCCCeEEEeccceeecCCCCCceEEEEEEecc
Confidence 7553 222 35899999995 899999997542 57899 9998 599999999999732 4 59999874
Q ss_pred -cCCCCCccC------CCCcccc------ccCCcceEEEEEEeCC-CCce---eEEecC---CCCccCcccCCCCCCCcc
Q 019836 148 -VRNPDLDMF------NGPLKET------LEDQTTELYEMRFNMK-TGLA---SQKKLS---PACVDFPRINEHYMGRKQ 207 (335)
Q Consensus 148 -~~~~~~~~~------~~~~~~~------~~~~~~~l~R~~idl~-~g~~---~~~~l~---~~~~EfP~in~~~~g~~~ 207 (335)
|+++.+... ...+... .....++|+||+||+. +|++ +.+.|. +.++|||+||+++.||+|
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~idl~~~g~~~~~~~~~l~~~~~~~~EFP~In~~~~Gr~~ 493 (610)
T PLN02969 414 SYQWFSFHRMFGYDWQNKKLDPSVMNNAKGKELLPHLVQVSIDLDRTGDCRSCDVEPLSNQWEKPADFPVINPSFSGQKN 493 (610)
T ss_pred ccccccccccccccccccccCcchhcccCcccccceEEEEEEeCCcCCccccccceeeccccccccccCccChhHCCCcc
Confidence 655432100 0000100 0113578999999996 6765 346675 679999999999999999
Q ss_pred cEEEeeecCC------CCCcCeEEEEeccCCCcccceeeecCCceeeEEEcCCCCcccccEEeeCC--CCCCCCCCCcEE
Q 019836 208 RYVYGSILEN------IAKVTGMIKFDLRAEPETGKTKLEVGGNVKGIFDLGPGRFGSEAVFVPRE--PSSTSEEDDGYL 279 (335)
Q Consensus 208 ry~Y~~~~~~------~~~~~~l~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~EPvFVPr~--~~~~~~EdDG~l 279 (335)
||+|+++.++ ..++++|+|+|+++++. +.|++|++++++|||||||+ ++ +++||||||
T Consensus 494 ry~Y~~~~~~~~~~~~~~~~~~l~K~D~~tg~~-------------~~w~~g~~~~~~EPvFVPr~~~p~-~~~EDDG~L 559 (610)
T PLN02969 494 EYTYAAAASGSRKTLPHFPFDSVVKLDVPDGSA-------------RSWSTGARRFVGEPVFVPRKSSQG-GGEEDDGYV 559 (610)
T ss_pred eEEEEeeecCCCcccccCCcCeEEEEECCCCCE-------------EEEEeCCCCcccCCEEecCCCCCC-CCccCCcEE
Confidence 9999988652 23579999999998763 47999999999999999995 23 458999999
Q ss_pred EEEEEeCCCCceEEEEEeCCCCCCC--ceEEEEcCCcC--CCCccccccC
Q 019836 280 IFHVHDENTGKSAVYVIDAKTMSAD--PVAVIELPHRV--PYGFHGIFLS 325 (335)
Q Consensus 280 L~~v~d~~~~~s~L~IlDA~~l~~g--PVAr~~LP~~i--P~GfHG~w~~ 325 (335)
|++|+|..+++|+|+||||++|++| ||||++||++| |+||||+|++
T Consensus 560 l~~v~d~~~~~S~LvILDAk~~~eg~~PVAri~LP~~v~~P~GfHG~w~~ 609 (610)
T PLN02969 560 LVVEYAVSDERCYLVILDAKRIGERDAVVAKLEVPKHLTFPMGFHGFWAD 609 (610)
T ss_pred EEEEEECCCCceEEEEEeCCCCcccCceeEEEECCcccCCCccccccccC
Confidence 9999999999999999999999996 99999999998 9999999986
No 6
>KOG1285 consensus Beta, beta-carotene 15,15'-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=6.6e-47 Score=375.88 Aligned_cols=309 Identities=40% Similarity=0.642 Sum_probs=263.6
Q ss_pred CCCCCCCCCCCCCCCCcccCCCCcEEEEEeecCC-CcEEEEEEcCCCCeEeeEEEecCCcccccccccCCCEEEEeeCCe
Q 019836 1 MLDYDKRLNHPFTAHPKIDPYTDEMFTFGYTQTP-PYVTYRVISKDGFMHDPVPITMSAPIMMHDFAITENYAIFLDLPM 79 (335)
Q Consensus 1 ~~d~~~~l~~~ftAHPk~Dp~tG~~~~~g~~~~~-~~~~~~~~~~~g~~~~~~~~~~p~~~~iHDfavTeny~V~~~~P~ 79 (335)
+.+|+++|.....||||+||.+|+++...|+..+ +++.|.++++.|.....+.+....+.|+||||+|||+.|+++.++
T Consensus 269 ~~e~~~~l~~~~~a~pk~~~~~g~~~~~~yd~~~~~~l~~~~~~~~~~k~~~~~~~~~~~t~hh~na~eedg~vi~D~~~ 348 (582)
T KOG1285|consen 269 RFEFPLRLNLSKFAHPKLDPVTGEWFADFYDWVPKPYLIYHKFSKEGGKSVPVEIFPSFPTFHHDNAFEEDGCVVPDLCV 348 (582)
T ss_pred EecCCcccchhhhccCcccccccchhhhhhcccCCCcEEEEEeccccCccCcceeccCcceEEEeeeecccCceEEEEEE
Confidence 3578888888899999999999999999998764 789999999999888767766668999999999999999999999
Q ss_pred eecHHHHHhcCceeeEEcCCCCcEEEEEeCCCCCCCceEEEEcCCeeEEcCccceecCCC--eEEEEEEecCCCCCccCC
Q 019836 80 CFRQKEMVKENKLIYAFDPTIKARFGVLPRYARDDLQIRWFELPNCYIFHNANAWEEEED--EVVLITCRVRNPDLDMFN 157 (335)
Q Consensus 80 ~~~~~~~l~~~~~~~~~~~~~~~~~~vipR~~~~~~~v~~~~~~~~f~fH~~NA~E~~d~--~ivvd~~~~~~~~~~~~~ 157 (335)
..+...|..++. ++..+..+..|+++.++...+..+++|.+.+.+++||+.|+||+... +++|...+....+.
T Consensus 349 ~~~~~~~~~~~~-p~~~~~~k~~rfg~~~k~~~d~~~~~~p~~~~~~~~~~~~~~e~~~~~~~~~v~~~~~s~~~~---- 423 (582)
T KOG1285|consen 349 YFDLSEMIRDTS-PLLYDNGKTLRFGLLSKTAPDARRIVWPLSPSKFAFHLWNNWEKKPYDWEVVVIGSCMSSTST---- 423 (582)
T ss_pred Eechhhhhcccc-eeecccccccccccccccCCcccceEEEeccccccccchhhhcccCCCceEEeecccCCccch----
Confidence 999998877654 68889999999999999988888999999999999999999996422 34444333322110
Q ss_pred CCccccccCCcceEEEEEEeCCCCceeEEecCC-CCccCcccCCCCCCCcccEEEeeecCCCCCcCeEEEEeccCCCccc
Q 019836 158 GPLKETLEDQTTELYEMRFNMKTGLASQKKLSP-ACVDFPRINEHYMGRKQRYVYGSILENIAKVTGMIKFDLRAEPETG 236 (335)
Q Consensus 158 ~~~~~~~~~~~~~l~R~~idl~~g~~~~~~l~~-~~~EfP~in~~~~g~~~ry~Y~~~~~~~~~~~~l~k~D~~~~~~~~ 236 (335)
...+..+....++...++++.+|...++.+.. .++|+++||..+.||+|||+|++..+.+...++++|+|+.+++.
T Consensus 424 -i~~~~de~~~~~l~e~r~~~~tg~~~~~~~~~~~nl~~~~in~~~~Gkk~ryvY~ai~~~~p~~~g~vKvDl~~g~~-- 500 (582)
T KOG1285|consen 424 -IFRESDELLGNRLEEIRLNLKTGLEFPRPVIPKINLDFGMINRSYLGKKYRYVYGAILDPWPKVSGIVKVDLVTGEV-- 500 (582)
T ss_pred -hhcccccchhceeeeeeecccccccccceeecccccccccccceeecccceEEEEEecCCccCCCeEEEEEecCCce--
Confidence 11122344567899999999998877665554 59999999999999999999999998878899999999998874
Q ss_pred ceeeecCCceeeEEEcCCCCcccccEEeeCCCCCCCCCCCcEEEEEEEeCCCCceEEEEEeCCCCCCCceEEEEcCCcCC
Q 019836 237 KTKLEVGGNVKGIFDLGPGRFGSEAVFVPREPSSTSEEDDGYLIFHVHDENTGKSAVYVIDAKTMSADPVAVIELPHRVP 316 (335)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~EPvFVPr~~~~~~~EdDG~lL~~v~d~~~~~s~L~IlDA~~l~~gPVAr~~LP~~iP 316 (335)
..|..|.+++.|||+|||++ + +.+|||||||++|++.++.+|+|+||||++|++ +||++||.++|
T Consensus 501 -----------~~w~~~~~~~~GEP~FVP~p-~-~~eEDdG~Iv~~v~~~~~~~s~l~ildAK~l~~--~ar~~vp~rvP 565 (582)
T KOG1285|consen 501 -----------KKWREGGGRPGGEPIFVPRP-G-TLEEDDGYIVSVVHDESKEKSFLLILDAKTLEE--VARVEVPTRVP 565 (582)
T ss_pred -----------eeEecCCCccCCCceEecCC-C-CcccCCcEEEEEEEcCCCCcccEEEEeccccce--eeEEecCCCCC
Confidence 36999999888899999996 4 569999999999999999999999999999986 99999999999
Q ss_pred CCccccccChhhHHHh
Q 019836 317 YGFHGIFLSEEQLEEL 332 (335)
Q Consensus 317 ~GfHG~w~~~~~~~~~ 332 (335)
+||||.|++..+++.|
T Consensus 566 ~gfHG~f~~~~~~~~~ 581 (582)
T KOG1285|consen 566 YGFHGTFVSTTDLATQ 581 (582)
T ss_pred CccceeEecccccccc
Confidence 9999999999998876
No 7
>KOG1285 consensus Beta, beta-carotene 15,15'-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.54 E-value=4.3e-14 Score=141.71 Aligned_cols=203 Identities=19% Similarity=0.267 Sum_probs=125.7
Q ss_pred CCCCCCC--CCCCCCCcccCCCCcEEE-EEee-cCCCcE-EEEEE-c-CCCCe---E-------eeEE---EecCCcccc
Q 019836 3 DYDKRLN--HPFTAHPKIDPYTDEMFT-FGYT-QTPPYV-TYRVI-S-KDGFM---H-------DPVP---ITMSAPIMM 62 (335)
Q Consensus 3 d~~~~l~--~~ftAHPk~Dp~tG~~~~-~g~~-~~~~~~-~~~~~-~-~~g~~---~-------~~~~---~~~p~~~~i 62 (335)
+|.+.+. ..++|||+.|+. |+++| +|.. ++...- .|..+ + +.|.- . +... -.++.|.||
T Consensus 179 ~~~k~~v~~~~~gah~~~d~~-G~~~g~~g~~~~~~~~~r~~~~~~~p~~~~~~~~~~~v~~~~~~~a~~~dd~~~p~yv 257 (582)
T KOG1285|consen 179 RFTKTLVQEHTAGAHPHPDEI-GTVYGHFGIARFGLFFARALTVLKNPANGVGLANAGLVWFHNRLLAYSEDDLPYPGYV 257 (582)
T ss_pred ccccceeeeeecccCCcccCc-ccEEeeechhhccccccceeEEEecCCCccccccccceEeecceeeeccCCCccceEE
Confidence 4445332 367899999985 99999 6665 443321 22222 2 22111 0 1111 146799999
Q ss_pred cccccCCCEEEEeeCCeeecHHHHHhcC------c---eeeEEcCCCCcEEEEEeCCCCCCCceEEEEcCCeeEEcCccc
Q 019836 63 HDFAITENYAIFLDLPMCFRQKEMVKEN------K---LIYAFDPTIKARFGVLPRYARDDLQIRWFELPNCYIFHNANA 133 (335)
Q Consensus 63 HDfavTeny~V~~~~P~~~~~~~~l~~~------~---~~~~~~~~~~~~~~vipR~~~~~~~v~~~~~~~~f~fH~~NA 133 (335)
|+|++||||+|+++.|+++++.+++.-. . .++.|.|+...+++++.+.+.....+. ..+++++||++||
T Consensus 258 hs~G~tenyi~~~e~~~~l~~~~~a~pk~~~~~g~~~~~~yd~~~~~~l~~~~~~~~~~k~~~~~--~~~~~~t~hh~na 335 (582)
T KOG1285|consen 258 HSFGDTENYIGRFEFPLRLNLSKFAHPKLDPVTGEWFADFYDWVPKPYLIYHKFSKEGGKSVPVE--IFPSFPTFHHDNA 335 (582)
T ss_pred eecCCccceEeEecCCcccchhhhccCcccccccchhhhhhcccCCCcEEEEEeccccCccCcce--eccCcceEEEeee
Confidence 9999999999999999999998876421 1 246888988999999999875433333 3345899999999
Q ss_pred eecCCCeEEEEEEecCCCCCccCCCCccccccCCcceEEEEEEeCCCCceeE---EecCCCCccCcccCCCCCCCcccEE
Q 019836 134 WEEEEDEVVLITCRVRNPDLDMFNGPLKETLEDQTTELYEMRFNMKTGLASQ---KKLSPACVDFPRINEHYMGRKQRYV 210 (335)
Q Consensus 134 ~E~~d~~ivvd~~~~~~~~~~~~~~~~~~~~~~~~~~l~R~~idl~~g~~~~---~~l~~~~~EfP~in~~~~g~~~ry~ 210 (335)
||++ +.|+.|.|++.+....... .. .......+..|+.++.++..... -.+....+.|| ...++.-++|...
T Consensus 336 ~eed-g~vi~D~~~~~~~~~~~~~--~~-p~~~~~~k~~rfg~~~k~~~d~~~~~~p~~~~~~~~~-~~~~~e~~~~~~~ 410 (582)
T KOG1285|consen 336 FEED-GCVVPDLCVYFDLSEMIRD--TS-PLLYDNGKTLRFGLLSKTAPDARRIVWPLSPSKFAFH-LWNNWEKKPYDWE 410 (582)
T ss_pred eccc-CceEEEEEEEechhhhhcc--cc-eeecccccccccccccccCCcccceEEEecccccccc-chhhhcccCCCce
Confidence 9999 9999999999876521110 10 11123345556666655433221 12233455666 3333333566654
Q ss_pred Eee
Q 019836 211 YGS 213 (335)
Q Consensus 211 Y~~ 213 (335)
+.+
T Consensus 411 ~~v 413 (582)
T KOG1285|consen 411 VVV 413 (582)
T ss_pred EEe
Confidence 443
No 8
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=55.12 E-value=92 Score=30.24 Aligned_cols=74 Identities=23% Similarity=0.310 Sum_probs=44.7
Q ss_pred CcccEEEeeecCCCCCcCeEEEEeccCCCcccceeeecCCceeeEEEcCCCCcccccEEeeCCCCCCCCCCCcEEEEEEE
Q 019836 205 RKQRYVYGSILENIAKVTGMIKFDLRAEPETGKTKLEVGGNVKGIFDLGPGRFGSEAVFVPREPSSTSEEDDGYLIFHVH 284 (335)
Q Consensus 205 ~~~ry~Y~~~~~~~~~~~~l~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~EPvFVPr~~~~~~~EdDG~lL~~v~ 284 (335)
..-||+|.++.+ ..|.++|+.+++... ....| .+|.=|.= +.|.-||++..+
T Consensus 46 ~Dgr~~yv~~rd-----g~vsviD~~~~~~v~------------~i~~G-----~~~~~i~~------s~DG~~~~v~n~ 97 (369)
T PF02239_consen 46 PDGRYLYVANRD-----GTVSVIDLATGKVVA------------TIKVG-----GNPRGIAV------SPDGKYVYVANY 97 (369)
T ss_dssp T-SSEEEEEETT-----SEEEEEETTSSSEEE------------EEE-S-----SEEEEEEE--------TTTEEEEEEE
T ss_pred CCCCEEEEEcCC-----CeEEEEECCcccEEE------------EEecC-----CCcceEEE------cCCCCEEEEEec
Confidence 346899988654 379999999776421 22222 33443332 235558887777
Q ss_pred eCCCCceEEEEEeCCCCCCCceEEEEcC
Q 019836 285 DENTGKSAVYVIDAKTMSADPVAVIELP 312 (335)
Q Consensus 285 d~~~~~s~L~IlDA~~l~~gPVAr~~LP 312 (335)
.. ..+.|+|+++|+ ||.++...
T Consensus 98 ~~----~~v~v~D~~tle--~v~~I~~~ 119 (369)
T PF02239_consen 98 EP----GTVSVIDAETLE--PVKTIPTG 119 (369)
T ss_dssp ET----TEEEEEETTT----EEEEEE--
T ss_pred CC----CceeEecccccc--ceeecccc
Confidence 55 489999999997 58888654
No 9
>PF09843 DUF2070: Predicted membrane protein (DUF2070); InterPro: IPR019204 This domain of unknown function is found in various bacterial and archael hypothetical proteins, as well as in prokaryotic polyketide synthase.
Probab=38.75 E-value=37 Score=29.41 Aligned_cols=51 Identities=18% Similarity=0.145 Sum_probs=38.3
Q ss_pred EEEcCCCCcccccEEeeCCCCCCCCCCCcEEEEEEEeCCCCceEEEEEeCCCCCCC
Q 019836 249 IFDLGPGRFGSEAVFVPREPSSTSEEDDGYLIFHVHDENTGKSAVYVIDAKTMSAD 304 (335)
Q Consensus 249 ~~~~~~~~~~~EPvFVPr~~~~~~~EdDG~lL~~v~d~~~~~s~L~IlDA~~l~~g 304 (335)
....+-|+..++|.+-+. . +=+++-+.+++.+...+++.|+++|+.+|+.|
T Consensus 38 ~~~~~~G~~~~~~~~~~~-~----~lg~~gi~~~~v~~~g~~~~lv~~DsNNm~~~ 88 (179)
T PF09843_consen 38 EYPLEVGYAEAEPFLGEH-E----GLGIGGISALVVEVGGQRSALVLADSNNMEPG 88 (179)
T ss_pred ccccccceEeccCCCCCC-C----CcCccccEEEEEEeCCcEEEEEEEECCCCCHH
Confidence 355566777677774443 2 34678888999999889999999999999853
No 10
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=34.73 E-value=4.3e+02 Score=25.54 Aligned_cols=37 Identities=35% Similarity=0.449 Sum_probs=25.4
Q ss_pred cEEEEEEEeCCC-----CceEEEEEeCCCCCCCceEEEEcCCcC
Q 019836 277 GYLIFHVHDENT-----GKSAVYVIDAKTMSADPVAVIELPHRV 315 (335)
Q Consensus 277 G~lL~~v~d~~~-----~~s~L~IlDA~~l~~gPVAr~~LP~~i 315 (335)
|-|.++.+.... ..+|+|++|.++=+. |+|+.|++.+
T Consensus 250 ~rlyvLMh~g~~gsHKdpgteVWv~D~~t~kr--v~Ri~l~~~~ 291 (342)
T PF06433_consen 250 GRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKR--VARIPLEHPI 291 (342)
T ss_dssp TEEEEEEEE--TT-TTS-EEEEEEEETTTTEE--EEEEEEEEEE
T ss_pred CeEEEEecCCCCCCccCCceEEEEEECCCCeE--EEEEeCCCcc
Confidence 456666665432 237999999998775 9999998543
No 11
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=30.70 E-value=1.3e+02 Score=18.32 Aligned_cols=28 Identities=36% Similarity=0.561 Sum_probs=19.4
Q ss_pred CceEEEEEeCCCCCCCceEEEEcCCcCCCCc
Q 019836 289 GKSAVYVIDAKTMSADPVAVIELPHRVPYGF 319 (335)
Q Consensus 289 ~~s~L~IlDA~~l~~gPVAr~~LP~~iP~Gf 319 (335)
....+.++|+.+.+ .+.++.+. .-|.++
T Consensus 12 ~~~~v~~id~~~~~--~~~~i~vg-~~P~~i 39 (42)
T TIGR02276 12 GSNTVSVIDTATNK--VIATIPVG-GYPFGV 39 (42)
T ss_pred CCCEEEEEECCCCe--EEEEEECC-CCCceE
Confidence 34588889998776 48888874 555543
No 12
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=26.15 E-value=1e+02 Score=29.90 Aligned_cols=31 Identities=35% Similarity=0.407 Sum_probs=20.5
Q ss_pred EEEEEEEeCCCCceEEEEEeCCCCCCCceEEEEcCC
Q 019836 278 YLIFHVHDENTGKSAVYVIDAKTMSADPVAVIELPH 313 (335)
Q Consensus 278 ~lL~~v~d~~~~~s~L~IlDA~~l~~gPVAr~~LP~ 313 (335)
+|..-+++.+. .|+|+|++++++ ++|+.++.
T Consensus 329 ~v~vS~~~~~~---~i~v~D~~Tl~~--~~~i~~~t 359 (369)
T PF02239_consen 329 EVWVSVWDGNG---AIVVYDAKTLKE--KKRIPVPT 359 (369)
T ss_dssp EEEEEEE--TT---EEEEEETTTTEE--EEEEE--S
T ss_pred EEEEEEecCCC---EEEEEECCCcEE--EEEEEeeC
Confidence 34445554433 999999999997 89998553
No 13
>PF14839 DOR: DOR family
Probab=25.71 E-value=40 Score=30.31 Aligned_cols=14 Identities=36% Similarity=0.686 Sum_probs=12.1
Q ss_pred CCCCCcEEEEEEEe
Q 019836 272 SEEDDGYLIFHVHD 285 (335)
Q Consensus 272 ~~EdDG~lL~~v~d 285 (335)
++|||||||+=+-+
T Consensus 3 e~edD~WilVD~~~ 16 (216)
T PF14839_consen 3 EEEDDEWILVDFID 16 (216)
T ss_pred ccccCCeEEEEecC
Confidence 57999999998777
No 14
>PF08262 Lem_TRP: Leucophaea maderae tachykinin-related peptide ; InterPro: IPR013206 These peptides are designated Leucophaea maderae (Madeira cockroach) tachykinin-related peptides (Lem TRPs). Some were isolated from the midgut of L. maderae, whereas others appear to be brain specific. The Lem TRPs of the brain are myotropic and induce increases in the amplitude and frequency of spontaneous contractions and tonus of hindgut muscle in L. maderae []. They were also isolated from brain-corpora, cardiaca-corpora, allata-suboesophageal ganglion extracts of Locusta migratoria (Migratory locust). They stimulate visceral muscle contractions of the oviduct and the foregut of L. migratoria [].
Probab=23.74 E-value=34 Score=15.25 Aligned_cols=6 Identities=67% Similarity=1.580 Sum_probs=4.3
Q ss_pred CCcccc
Q 019836 317 YGFHGI 322 (335)
Q Consensus 317 ~GfHG~ 322 (335)
.||||-
T Consensus 4 mgf~g~ 9 (10)
T PF08262_consen 4 MGFHGM 9 (10)
T ss_pred cccccc
Confidence 688883
Done!