Query 019836
Match_columns 335
No_of_seqs 147 out of 1020
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 07:49:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019836.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019836hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3npe_A 9-CIS-epoxycarotenoid d 100.0 1.3E-82 4.5E-87 636.8 32.2 311 2-333 210-528 (529)
2 2biw_A Apocarotenoid-cleaving 100.0 7.2E-82 2.5E-86 627.7 35.0 306 2-326 168-490 (490)
3 3kvc_A Retinoid isomerohydrola 100.0 8.4E-75 2.9E-79 582.2 22.1 303 2-326 166-533 (533)
4 1qks_A Cytochrome CD1 nitrite 53.4 1.7E+02 0.0058 28.6 13.4 104 173-312 179-285 (567)
5 4guc_A Protein BA_2500; virule 33.2 1.7E+02 0.0057 22.6 7.4 48 20-75 34-88 (120)
6 3c75_H MADH, methylamine dehyd 19.1 2.3E+02 0.0079 26.6 7.0 79 208-312 85-168 (426)
7 3mbr_X Glutamine cyclotransfer 18.5 3.5E+02 0.012 23.3 7.6 34 275-312 105-143 (243)
8 3nol_A Glutamine cyclotransfer 14.7 4.1E+02 0.014 23.2 7.0 23 289-313 144-166 (262)
9 2xpn_B SPT6, chromatin structu 13.5 65 0.0022 17.6 0.8 10 203-212 11-20 (26)
10 2xzh_A Clathrin heavy chain 1; 12.9 2.3E+02 0.0077 26.3 4.9 54 190-267 256-309 (365)
No 1
>3npe_A 9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti; seven blade beta propeller, abscisic acid, non iron, oxidoreductase; 3.20A {Zea mays}
Probab=100.00 E-value=1.3e-82 Score=636.76 Aligned_cols=311 Identities=38% Similarity=0.693 Sum_probs=277.0
Q ss_pred CCCCCCCCCCCCCCCcccCCCCcEEEEEeecC-CCcEEEEEEcCCCCeEeeEEEecCCcccccccccCCCEEEEeeCCee
Q 019836 2 LDYDKRLNHPFTAHPKIDPYTDEMFTFGYTQT-PPYVTYRVISKDGFMHDPVPITMSAPIMMHDFAITENYAIFLDLPMC 80 (335)
Q Consensus 2 ~d~~~~l~~~ftAHPk~Dp~tG~~~~~g~~~~-~~~~~~~~~~~~g~~~~~~~~~~p~~~~iHDfavTeny~V~~~~P~~ 80 (335)
+||+|.|..+||||||+||.||||++|+|+.. +++++|++++++|++.+.+++++|.++|||||||||||+||+++|+.
T Consensus 210 ~d~~g~l~~~~tAHPk~Dp~TGel~~f~y~~~~~p~~~~~~~~~~G~~~~~~~i~~~~p~~~HDFaiTenyvVf~~~Pl~ 289 (529)
T 3npe_A 210 YDFDGQLGCAMIAHPKLDPATGELHALSYDVIKRPYLKYFYFRPDGTKSDDVEIPLEQPTMIHDFAITENLVVVPDHQVV 289 (529)
T ss_dssp CCGGGCCCSCCCSCCEECTTTCCEEEEECCSSSSCCCEEEEECTTCCBCCCEECCCSSCBCCCCCEECSSEEEEEECSEE
T ss_pred eccCCccCCcccccCcCCCCCCcEEEEEeecCCCCcEEEEEECCCCCEEEEEEEeCCCCceEeeEEecCCeEEEEeCCeE
Confidence 68999999999999999999999999999975 48999999999999998889999999999999999999999999999
Q ss_pred ecHHHHHhcCceeeEEcCCCCcEEEEEeCCCCCCCceEEEEcCCeeEEcCccceecCC-CeEEEEEEecCCCCCccCCCC
Q 019836 81 FRQKEMVKENKLIYAFDPTIKARFGVLPRYARDDLQIRWFELPNCYIFHNANAWEEEE-DEVVLITCRVRNPDLDMFNGP 159 (335)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~~vipR~~~~~~~v~~~~~~~~f~fH~~NA~E~~d-~~ivvd~~~~~~~~~~~~~~~ 159 (335)
+|+.+|+.| +.++.|+|++++||+||||++++.+.++||++|+||+||++||||+++ |+||+|.|++.+.+..+.
T Consensus 290 ~~~~~~~~g-~~~~~~~p~~~tr~~VipR~~~~~~~vrw~e~~~~f~fH~~NA~Ee~~~~~ivv~~~~~~~~~~~~~--- 365 (529)
T 3npe_A 290 FKLQEMLRG-GSPVVLDAAKTSRFGVLPKHAADASEMAWVDVPDCFCFHLWNAWEDEATGEVVVIGSCMTPADSIFN--- 365 (529)
T ss_dssp ECGGGGTTT-CCSEEECTTSCCEEEEEETTCSSGGGCEEEECTTCEEEEEEEEEEETTTTEEEEEEEEECCCCCSCC---
T ss_pred EcHHHHhCC-CCceEECCCCCcEEEEEECCCCCCCceEEEEcCCEEEEEecccEecCCCCeEEEEEecccCchhhhh---
Confidence 999999875 578999999999999999997656689999999999999999999853 789998888755332110
Q ss_pred ccccccCCcceEEEEEEeCCCCceeEEecC----CCCccCcccCCCCCCCcccEEEeeecCCCCCcCeEEEEeccCCCcc
Q 019836 160 LKETLEDQTTELYEMRFNMKTGLASQKKLS----PACVDFPRINEHYMGRKQRYVYGSILENIAKVTGMIKFDLRAEPET 235 (335)
Q Consensus 160 ~~~~~~~~~~~l~R~~idl~~g~~~~~~l~----~~~~EfP~in~~~~g~~~ry~Y~~~~~~~~~~~~l~k~D~~~~~~~ 235 (335)
.......++|+||+||+.+|+++++.+. +.++|||+||+++.||+|||+|+++.++...+++|+|+|++|++.
T Consensus 366 --~~~~~~~~~l~r~rl~l~~g~~~~~~l~~~~~~~~~EfP~In~~~~Gr~~Ry~Y~~~~~~~~~~~~l~K~D~~tg~~- 442 (529)
T 3npe_A 366 --ESDERLESVLTEIRLDARTGRSTRRAVLPPSQQVNLEVGMVNRNLLGRETRYAYLAVAEPWPKVSGFAKVDLSTGEL- 442 (529)
T ss_dssp --SSSSCCCCEEEEEEECTTTCCEEEEESSCSSSCCCEEEEEECGGGTTSCCSEEEEEECCSTTSCCEEEEEETTTCCE-
T ss_pred --ccchhhccceEEEEEcCCCCCEEeEEecccccCccccCceEChhHcCCccceEEEeccCCCCCcceEEEEecCCCce-
Confidence 0123456899999999999999888877 488999999999999999999999987666789999999998773
Q ss_pred cceeeecCCceeeEEEcCCCCcccccEEeeCCCC--CCCCCCCcEEEEEEEeCCCCceEEEEEeCCCCCCCceEEEEcCC
Q 019836 236 GKTKLEVGGNVKGIFDLGPGRFGSEAVFVPREPS--STSEEDDGYLIFHVHDENTGKSAVYVIDAKTMSADPVAVIELPH 313 (335)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~EPvFVPr~~~--~~~~EdDG~lL~~v~d~~~~~s~L~IlDA~~l~~gPVAr~~LP~ 313 (335)
+.||+++++++||||||||+++ .+++|||||||++|+|..+++|+|+||||++|++ |||++||+
T Consensus 443 ------------~~~~~g~~~~~~EPvFVPrp~~~~~~~~EDDG~lLs~V~d~~~~~S~LlILDA~~l~~--vArv~LP~ 508 (529)
T 3npe_A 443 ------------TKFEYGEGRFGGEPCFVPMDPAAAHPRGEDDGYVLTFVHDERAGTSELLVVNAADMRL--EATVQLPS 508 (529)
T ss_dssp ------------EEEECCTTBCCCCCEEEECCSCSSSSCCTTCEEEEEEEEBSSCCCEEEEEEETTTTEE--EEEEEESS
T ss_pred ------------EEEEcCCCccccCCEeeeCCCCCCCCCCCCCcEEEEEEEECCCCcEEEEEEeCCCCcc--ceEEECCC
Confidence 4699999999999999999641 0258999999999999999999999999999985 89999999
Q ss_pred cCCCCccccccChhhHHHhh
Q 019836 314 RVPYGFHGIFLSEEQLEELA 333 (335)
Q Consensus 314 ~iP~GfHG~w~~~~~~~~~~ 333 (335)
+||+||||+|+++.+|.+|+
T Consensus 509 rvP~GfHG~wv~~~~l~~q~ 528 (529)
T 3npe_A 509 RVPFGFHGTFITGQELEAQA 528 (529)
T ss_dssp CCCCCSCEEEEEHHHHTTCC
T ss_pred CCCCCccccccCHHHhhhhh
Confidence 99999999999999998875
No 2
>2biw_A Apocarotenoid-cleaving oxygenase; non-heme iron, carotenoid cleavage, retinal forma oxidoreductase, dioxygenase; HET: 3ON; 2.39A {Synechocystis SP} PDB: 2bix_A*
Probab=100.00 E-value=7.2e-82 Score=627.74 Aligned_cols=306 Identities=25% Similarity=0.445 Sum_probs=271.6
Q ss_pred CCCCCCC-CC-CCCCCCcccCC------CCcEEEEEeecCCCc-EEEEEEcCCCCeEeeEEEecCCcccccccccCCCEE
Q 019836 2 LDYDKRL-NH-PFTAHPKIDPY------TDEMFTFGYTQTPPY-VTYRVISKDGFMHDPVPITMSAPIMMHDFAITENYA 72 (335)
Q Consensus 2 ~d~~~~l-~~-~ftAHPk~Dp~------tG~~~~~g~~~~~~~-~~~~~~~~~g~~~~~~~~~~p~~~~iHDfavTeny~ 72 (335)
+||+|.| .+ +||||||+||. ||||+|||++.+++. ++|++++++|++.+..++++|.++|||||||||||+
T Consensus 168 ~d~~g~l~~~~~~tAHPk~Dp~~~~~~gtgel~~fg~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~HDfaiTeny~ 247 (490)
T 2biw_A 168 DDLGGILAEGQPLSAHPRIDPASTFDGGQPCYVTFSIKSSLSSTLTLLELDPQGKLLRQKTETFPGFAFIHDFAITPHYA 247 (490)
T ss_dssp CCTTTTSCTTCCCCSCCEEESSCTTTTTCCEEEEEEEEESSEEEEEEEEECTTSCEEEEEEEEEESCCCCCCCEECSSEE
T ss_pred eccCCcccCCcccccCceECccccccCCCCeEEEEEecCCCCcEEEEEEECCCCCEEeeEEEeCCCCceEeeeeccCCEE
Confidence 6899999 54 89999999999 999999999987644 899999999999999999999999999999999999
Q ss_pred EEeeCCeeecHHHHHhcCc---eeeEEcCCCCcEEEEEeCCCCCCCceEEEEcCCeeEEcCccceecCCCeEEEEEEecC
Q 019836 73 IFLDLPMCFRQKEMVKENK---LIYAFDPTIKARFGVLPRYARDDLQIRWFELPNCYIFHNANAWEEEEDEVVLITCRVR 149 (335)
Q Consensus 73 V~~~~P~~~~~~~~l~~~~---~~~~~~~~~~~~~~vipR~~~~~~~v~~~~~~~~f~fH~~NA~E~~d~~ivvd~~~~~ 149 (335)
||+++|+.+|+.+++.+++ .+++|+|++++||+||||+ + +.++||++|+||+||++||||++ |+||+|.|+|+
T Consensus 248 V~~~~P~~~~~~~~~~g~~~~~~~~~~~p~~~tr~~VipR~-~--~~v~~f~~~~~f~fH~~NA~Ee~-~~Iv~d~~~~~ 323 (490)
T 2biw_A 248 IFLQNNVTLNGLPYLFGLRGAGECVQFHPDKPAQIILVPRD-G--GEIKRIPVQAGFVFHHANAFEEN-GKIILDSICYN 323 (490)
T ss_dssp EEEECCEEECCHHHHTTSSCGGGGEEECTTSCEEEEEEETT-S--CCCEEEEECCCEEEEEEEEEEET-TEEEEEEEEES
T ss_pred EEEeCCeEEcHHHHhhccCCccceeEeCCCCCcEEEEEECC-C--CccEEEecCCCeEEecccceecC-CeEEEEEeccC
Confidence 9999999999999986543 4799999999999999998 2 46899999999999999999998 99999999998
Q ss_pred CCCCccCCCCccc--cccCCcceEEEEEEeCCCCceeEEecCCCCccCcccCCCCCCCcccEEEeeecC---CCCCcCeE
Q 019836 150 NPDLDMFNGPLKE--TLEDQTTELYEMRFNMKTGLASQKKLSPACVDFPRINEHYMGRKQRYVYGSILE---NIAKVTGM 224 (335)
Q Consensus 150 ~~~~~~~~~~~~~--~~~~~~~~l~R~~idl~~g~~~~~~l~~~~~EfP~in~~~~g~~~ry~Y~~~~~---~~~~~~~l 224 (335)
+..+-.......+ ......++|+||+|||++|+++++.|++.++|||+||+++.||+|||+|+++.+ ....+++|
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~l~R~~i~l~~g~v~~~~l~~~~~EfP~In~~~~G~~~Ry~Y~~~~~~~~~~~~~~~l 403 (490)
T 2biw_A 324 SLPQVDTDGDFRSTNFDNLDPGQLWRFTIDPAAATVEKQLMVSRCCEFPVVHPQQVGRPYRYVYMGAAHHSTGNAPLQAI 403 (490)
T ss_dssp CCCCCCTTCCGGGCCGGGSCCCEEEEEEEETTTTEEEEEEEECSCEEEEECCGGGTTSCCSEEEEEECSSSSSCCCCCEE
T ss_pred CcccccccccccccccccCCCceEEEEEEECCCCceEEEeccCCcccccccChhhCCceeeeEEEEeecCCCCCCCCCeE
Confidence 8654111111111 122356899999999999999999999999999999999999999999999875 34468999
Q ss_pred EEEeccCCCcccceeeecCCceeeEEEcCCCCcccccEEeeCCCCCCCCCCCcEEEEEEEeCCCCceEEEEEeCCCCCCC
Q 019836 225 IKFDLRAEPETGKTKLEVGGNVKGIFDLGPGRFGSEAVFVPREPSSTSEEDDGYLIFHVHDENTGKSAVYVIDAKTMSAD 304 (335)
Q Consensus 225 ~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~EPvFVPr~~~~~~~EdDG~lL~~v~d~~~~~s~L~IlDA~~l~~g 304 (335)
+|+|++|++. +.|++|+++++|||+||||++ +++|||||||++|+|..+++|+|+||||++|++|
T Consensus 404 ~K~D~~tg~~-------------~~~~~g~g~~~~EPvFVPrp~--~~~EDDG~ll~~V~d~~~~~S~l~IlDA~~~~~~ 468 (490)
T 2biw_A 404 LKVDLESGTE-------------TLRSFAPHGFAGEPIFVPRPG--GVAEDDGWLLCLIYKADLHRSELVILDAQDITAP 468 (490)
T ss_dssp EEEETTTTEE-------------EEEECTTTEECCCCEEEECTT--CCSTTCEEEEEEEEETTTTEEEEEEEETTCTTSC
T ss_pred EEEECCCCCE-------------EEEECCCCccccCCEEecCCC--CCCCCCcEEEEEEEeCCCCceeEEEEccCCCCcC
Confidence 9999998763 469999999999999999964 4689999999999999999999999999999999
Q ss_pred ceEEEEcCCcCCCCccccccCh
Q 019836 305 PVAVIELPHRVPYGFHGIFLSE 326 (335)
Q Consensus 305 PVAr~~LP~~iP~GfHG~w~~~ 326 (335)
||||++||++||+||||+|+++
T Consensus 469 pvArv~lP~rvP~GfHG~wv~~ 490 (490)
T 2biw_A 469 AIATLKLKHHIPYPLHGSWAQT 490 (490)
T ss_dssp CSEEEECSSCCCCCCCEEEEEC
T ss_pred ceEEEeCCCcCCCCccccccCC
Confidence 9999999999999999999863
No 3
>3kvc_A Retinoid isomerohydrolase; 7-bladed beta-propeller, monotopic membrane protein, sensory transduction, vision, isomerase, non-heme iron protein; 1.90A {Bos taurus} PDB: 3fsn_A 4f2z_A 4f30_A 4f3a_A 4f3d_A
Probab=100.00 E-value=8.4e-75 Score=582.24 Aligned_cols=303 Identities=19% Similarity=0.334 Sum_probs=237.0
Q ss_pred CCCCCCCC-CCCCCCCcccCCCCcEEEEEeecCCC-c--EEEEEEcCC-----CCeEe-eEE--E---ecCCcccccccc
Q 019836 2 LDYDKRLN-HPFTAHPKIDPYTDEMFTFGYTQTPP-Y--VTYRVISKD-----GFMHD-PVP--I---TMSAPIMMHDFA 66 (335)
Q Consensus 2 ~d~~~~l~-~~ftAHPk~Dp~tG~~~~~g~~~~~~-~--~~~~~~~~~-----g~~~~-~~~--~---~~p~~~~iHDfa 66 (335)
+||+|.|+ .+||||||+|| |||+||||++.+++ . ..++.++++ +.+.+ .+. + +++.|+||||||
T Consensus 166 ~d~~g~l~~~~~tAHPk~Dp-tGel~~fg~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~p~~iHDFa 244 (533)
T 3kvc_A 166 VDLCNYVSVNGATAHPHIEN-DGTVYNIGNCFGKNFSIAYNIVKIPPLQADKEDPISKSEIVVQFPCSDRFKPSYVHSFG 244 (533)
T ss_dssp EEHHHHSSCSCCCSCCEECT-TSCEEEEEEECC---CCEEEEEEECCCCTTCCCGGGGCEEEEEEECSSTTCCBCCCCCE
T ss_pred cccCCccCCCccCCCCccCC-CCCEEEEeeccCCCCCcEEEEEEECccccccccccccceeEEeeccccCCCCceeeeee
Confidence 47788887 58999999999 99999999998753 3 444444543 22222 122 3 246899999999
Q ss_pred cCCCEEEEeeCCeeecHHHHHhc----Cce---eeEEcCCCCcEEEEEeCCCCCCCceEEEEcCCeeEEcCccceecCCC
Q 019836 67 ITENYAIFLDLPMCFRQKEMVKE----NKL---IYAFDPTIKARFGVLPRYARDDLQIRWFELPNCYIFHNANAWEEEED 139 (335)
Q Consensus 67 vTeny~V~~~~P~~~~~~~~l~~----~~~---~~~~~~~~~~~~~vipR~~~~~~~v~~~~~~~~f~fH~~NA~E~~d~ 139 (335)
|||||+||+++|+.+|+.+|+++ ++. +++|+|++++||+||||++++ ..++|+++++||+||++||||++ |
T Consensus 245 iTeny~Vf~~~P~~~~~~~~~~g~~~~~~~~~~~~~~~p~~~tr~~VipR~~~~-~~~~~~~~~~~f~fH~~NA~Ee~-~ 322 (533)
T 3kvc_A 245 LTPNYIVFVETPVKINLFKFLSSWSLWGANYMDCFESNETMGVWLHIADKKRKK-YINNKYRTSPFNLFHHINTYEDH-E 322 (533)
T ss_dssp ECSSEEEEEECSEEEC-----------CCCSGGGEEECSSCCEEEEEEETTTTE-EEEEEEEECCEEEEEEEEEEEET-T
T ss_pred ecCCEEEEEeCCeEEcHHHHhhcccccCCChHHheeecCCCCcEEEEEECCCCC-cccEEEEeCCeeEEeeeeeEEeC-C
Confidence 99999999999999999999876 433 699999999999999999742 23578999999999999999987 9
Q ss_pred eEEEEEEecCC-CCCc--cCCCCcccc--------ccCCcceEEEEEEeCCCC------------------------c--
Q 019836 140 EVVLITCRVRN-PDLD--MFNGPLKET--------LEDQTTELYEMRFNMKTG------------------------L-- 182 (335)
Q Consensus 140 ~ivvd~~~~~~-~~~~--~~~~~~~~~--------~~~~~~~l~R~~idl~~g------------------------~-- 182 (335)
+||+|.|+|++ ..+- +...++... .....++|+||+|||.++ +
T Consensus 323 ~Iv~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~R~~l~l~~~~~~~~~nl~~~~~~~~~a~~~~~~~~~ 402 (533)
T 3kvc_A 323 FLIVDLCCWKGFEFVYNYLYLANLRENWEEVKKNARKAPQPEVRRYVLPLNIDKADTGKNLVTLPNTTATAILCSDETIW 402 (533)
T ss_dssp EEEEEEEEEESSSCGGGGCBHHHHTSCHHHHHHHHTTSCEEEEEEEEEESCCCGGGTTSBCCCCTTCCCEEEECTTSEEE
T ss_pred EEEEEEeeeCCchhhhhhhhhhhhcccchhccccccccCCceEEEEEEeCCcccccccccccccccccceeeeccCCcee
Confidence 99999999987 4421 101111110 113568999999999875 1
Q ss_pred eeEEecCC--C-CccCcccCC-CCCCCcccEEEeeecCCCCCcCeEEEEeccCCCcccceeeecCCceeeEEEcCCCCcc
Q 019836 183 ASQKKLSP--A-CVDFPRINE-HYMGRKQRYVYGSILENIAKVTGMIKFDLRAEPETGKTKLEVGGNVKGIFDLGPGRFG 258 (335)
Q Consensus 183 ~~~~~l~~--~-~~EfP~in~-~~~g~~~ry~Y~~~~~~~~~~~~l~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (335)
++++.|++ . ++|||+||+ ++.||+|||+|+++.+ ...+++|+|+|++|++. ..|.++++++
T Consensus 403 ~~~~~l~~~~~~~~EfP~In~~~~~Gr~~Ry~Y~~~~~-~~~~~~l~K~D~~tg~~--------------~~w~~~~~~~ 467 (533)
T 3kvc_A 403 LEPEVLFSGPRQAFEFPQINYQKYGGKPYTYAYGLGLN-HFVPDRLCKLNVKTKET--------------WVWQEPDSYP 467 (533)
T ss_dssp EECEEEECBTTEEEEEEECCHHHHTTSCCCEEEEEEEE-TTEEEEEEEEETTTCCE--------------EEECCTTCBC
T ss_pred eeeeeeccCCcccccCceECHHHhCCCcccEEEEeccC-CCCCceeEEEEcCCCCE--------------EEEeCCCccc
Confidence 33456664 6 899999999 7999999999999865 34679999999998773 3456899999
Q ss_pred cccEEeeCCCCCCCCCCCcEEEEEEEeCCC--CceEEEEEeCCCCCCCceEEEEcCCcCCCCccccccCh
Q 019836 259 SEAVFVPREPSSTSEEDDGYLIFHVHDENT--GKSAVYVIDAKTMSADPVAVIELPHRVPYGFHGIFLSE 326 (335)
Q Consensus 259 ~EPvFVPr~~~~~~~EdDG~lL~~v~d~~~--~~s~L~IlDA~~l~~gPVAr~~LP~~iP~GfHG~w~~~ 326 (335)
||||||||++ +++|||||||++|+|..+ ++|+|+||||++|++ |||++||++||+||||+|+++
T Consensus 468 ~EPiFVPrp~--~~~EDDG~lLs~V~d~~~~~~~s~LlILDA~~l~~--vArv~lP~rvP~GfHG~w~~~ 533 (533)
T 3kvc_A 468 SEPIFVSHPD--ALEEDDGVVLSVVVSPGAGQKPAYLLILNAKDLSE--VARAEVEINIPVTFHGLFKKS 533 (533)
T ss_dssp CCCEEEECTT--CCSTTCEEEEEEEECCSTTSCSEEEEEEETTTCCE--EEEEEESSCCCCCCEEEEEEC
T ss_pred cCceeecCCC--CCCCCCcEEEEEEEeCCcCCCccEEEEEeCCCChh--hEEEEeCCCCCCCccccccCC
Confidence 9999999964 468999999999999985 668999999999985 999999999999999999863
No 4
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=53.41 E-value=1.7e+02 Score=28.57 Aligned_cols=104 Identities=17% Similarity=0.142 Sum_probs=58.2
Q ss_pred EEEEeCCCCceeEEecCCCCccCcccCCCCCCCcccEEEeeecCCCCCcCeEEEEecc--CCCcccceeeecCCceeeEE
Q 019836 173 EMRFNMKTGLASQKKLSPACVDFPRINEHYMGRKQRYVYGSILENIAKVTGMIKFDLR--AEPETGKTKLEVGGNVKGIF 250 (335)
Q Consensus 173 R~~idl~~g~~~~~~l~~~~~EfP~in~~~~g~~~ry~Y~~~~~~~~~~~~l~k~D~~--~~~~~~~~~~~~~~~~~~~~ 250 (335)
-..||+.++++..+.-.........+++ .-||+|.++.+ +.|..+|+. +++. ..
T Consensus 179 V~viD~~t~~v~~~i~~g~~p~~v~~Sp-----DGr~lyv~~~d-----g~V~viD~~~~t~~~--------------v~ 234 (567)
T 1qks_A 179 IALIDGSTYEIKTVLDTGYAVHISRLSA-----SGRYLFVIGRD-----GKVNMIDLWMKEPTT--------------VA 234 (567)
T ss_dssp EEEEETTTCCEEEEEECSSCEEEEEECT-----TSCEEEEEETT-----SEEEEEETTSSSCCE--------------EE
T ss_pred EEEEECCCCeEEEEEeCCCCccceEECC-----CCCEEEEEcCC-----CeEEEEECCCCCCcE--------------eE
Confidence 4567888887665432222223334443 34688876532 479999996 4432 11
Q ss_pred EcCCCCcccccEEeeCCCCCCCC-CCCcEEEEEEEeCCCCceEEEEEeCCCCCCCceEEEEcC
Q 019836 251 DLGPGRFGSEAVFVPREPSSTSE-EDDGYLIFHVHDENTGKSAVYVIDAKTMSADPVAVIELP 312 (335)
Q Consensus 251 ~~~~~~~~~EPvFVPr~~~~~~~-EdDG~lL~~v~d~~~~~s~L~IlDA~~l~~gPVAr~~LP 312 (335)
....| .+|.-+.=.+ -. -|.-||++.-+.. ..+.|+|+.+++ ++.++.+.
T Consensus 235 ~i~~G---~~P~~ia~s~---~~~pDGk~l~v~n~~~----~~v~ViD~~t~~--~~~~i~~~ 285 (567)
T 1qks_A 235 EIKIG---SEARSIETSK---MEGWEDKYAIAGAYWP----PQYVIMDGETLE--PKKIQSTR 285 (567)
T ss_dssp EEECC---SEEEEEEECC---STTCTTTEEEEEEEET----TEEEEEETTTCC--EEEEEECC
T ss_pred EEecC---CCCceeEEcc---ccCCCCCEEEEEEccC----CeEEEEECCCCc--EEEEEecc
Confidence 11222 3444433210 00 1444887776643 468899999987 58888764
No 5
>4guc_A Protein BA_2500; virulence, pathogenesis, vaccine candidate, center for struc genomics of infectious diseases, csgid, niaid; HET: PGE; 1.40A {Bacillus anthracis}
Probab=33.24 E-value=1.7e+02 Score=22.65 Aligned_cols=48 Identities=17% Similarity=0.171 Sum_probs=34.7
Q ss_pred CCCCcEEEEEeecCC---CcEEEEEEc----CCCCeEeeEEEecCCcccccccccCCCEEEEe
Q 019836 20 PYTDEMFTFGYTQTP---PYVTYRVIS----KDGFMHDPVPITMSAPIMMHDFAITENYAIFL 75 (335)
Q Consensus 20 p~tG~~~~~g~~~~~---~~~~~~~~~----~~g~~~~~~~~~~p~~~~iHDfavTeny~V~~ 75 (335)
-.||..+++....+. ..+..|.+. ++|.+.|-.. |||+..+++|.+|-
T Consensus 34 lktGdtf~it~~~~~~d~g~~KIyrv~~~~~~~g~L~RYkT--------I~d~~~~~~~~~f~ 88 (120)
T 4guc_A 34 LKHGDTFDVTIYTGGKDTGIVKIYQLSGNENDEINLHRYKT--------IYDSGLKHNYGRFV 88 (120)
T ss_dssp EETTCEEEEEEECCSSBCCEEEEEEECSCTTCSCCEEEEEE--------EECCCCCTTEEEEE
T ss_pred cccCCEEEEEEEcCCCccceEEEEEEccCCCCCcceEEEEE--------eccCCCcCCeeEEE
Confidence 358999888886543 347777774 5788887543 47888899987764
No 6
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=19.13 E-value=2.3e+02 Score=26.59 Aligned_cols=79 Identities=25% Similarity=0.204 Sum_probs=44.5
Q ss_pred cEEEeeecCCCCCcCeEEEEeccCCCcccceeeecCCceeeEEEcCCCCcccccEEeeCCCCCCCCCCCcEEEEEEEeCC
Q 019836 208 RYVYGSILENIAKVTGMIKFDLRAEPETGKTKLEVGGNVKGIFDLGPGRFGSEAVFVPREPSSTSEEDDGYLIFHVHDEN 287 (335)
Q Consensus 208 ry~Y~~~~~~~~~~~~l~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~EPvFVPr~~~~~~~EdDG~lL~~v~d~~ 287 (335)
+++|.+........+.|..+|+++.+..+ .... |..+ . ++-. + |..+|.+.-....
T Consensus 85 ~~vyV~n~~~~~~~~~VsVID~~t~~vv~------------~I~v--G~~P-g--ia~S-p------Dgk~lyVan~~~~ 140 (426)
T 3c75_H 85 RRVYIQDPAHFAAITQQFVIDGSTGRILG------------MTDG--GFLP-H--PVAA-E------DGSFFAQASTVFE 140 (426)
T ss_dssp TEEEEEECTTTCSSEEEEEEETTTTEEEE------------EEEE--CSSC-E--EEEC-T------TSSCEEEEEEEEE
T ss_pred CEEEEECCCcCCCCCeEEEEECCCCEEEE------------EEEC--CCCC-c--eEEC-C------CCCEEEEEecccc
Confidence 56887764311111799999999776422 2222 3333 2 2222 1 2234544332111
Q ss_pred -----CCceEEEEEeCCCCCCCceEEEEcC
Q 019836 288 -----TGKSAVYVIDAKTMSADPVAVIELP 312 (335)
Q Consensus 288 -----~~~s~L~IlDA~~l~~gPVAr~~LP 312 (335)
.....+.|+|+++++. ++++.+|
T Consensus 141 ~~~~G~~~~~VsviD~~t~~v--v~~I~v~ 168 (426)
T 3c75_H 141 RIARGKRTDYVEVFDPVTFLP--IADIELP 168 (426)
T ss_dssp ETTEEEEEEEEEEECTTTCCE--EEEEEET
T ss_pred ccccCCCCCEEEEEECCCCcE--EEEEECC
Confidence 1235799999999984 9999997
No 7
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=18.49 E-value=3.5e+02 Score=23.28 Aligned_cols=34 Identities=21% Similarity=0.512 Sum_probs=22.8
Q ss_pred CCcEEEEEEEeCC-----CCceEEEEEeCCCCCCCceEEEEcC
Q 019836 275 DDGYLIFHVHDEN-----TGKSAVYVIDAKTMSADPVAVIELP 312 (335)
Q Consensus 275 dDG~lL~~v~d~~-----~~~s~L~IlDA~~l~~gPVAr~~LP 312 (335)
.+||=|+ .|.. +..+.|.++|+++++. +.++.+-
T Consensus 105 ~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~--~~~I~V~ 143 (243)
T 3mbr_X 105 GEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQ--VGSIKVT 143 (243)
T ss_dssp SCCCEEE--ECSSCEEEECSSSEEEEECTTTCCE--EEEEECE
T ss_pred CCceEEe--eCCCEEEEECCCCeEEEEeCCCCeE--EEEEEEc
Confidence 4566555 3321 2456888999998875 7888775
No 8
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=14.72 E-value=4.1e+02 Score=23.23 Aligned_cols=23 Identities=17% Similarity=0.439 Sum_probs=16.6
Q ss_pred CceEEEEEeCCCCCCCceEEEEcCC
Q 019836 289 GKSAVYVIDAKTMSADPVAVIELPH 313 (335)
Q Consensus 289 ~~s~L~IlDA~~l~~gPVAr~~LP~ 313 (335)
+.+.|.++|+++++. ++++.+..
T Consensus 144 Gs~~i~~iDp~T~~v--~~~I~V~~ 166 (262)
T 3nol_A 144 GTPVLRFLDPESLTP--VRTITVTA 166 (262)
T ss_dssp SSSEEEEECTTTCSE--EEEEECEE
T ss_pred CCCeEEEEcCCCCeE--EEEEEecc
Confidence 356788888888874 77777753
No 9
>2xpn_B SPT6, chromatin structure modulator; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.95A {Encephalitozoon cuniculi} PDB: 2xpo_B
Probab=13.49 E-value=65 Score=17.62 Aligned_cols=10 Identities=40% Similarity=0.700 Sum_probs=7.3
Q ss_pred CCCcccEEEe
Q 019836 203 MGRKQRYVYG 212 (335)
Q Consensus 203 ~g~~~ry~Y~ 212 (335)
.|.+|||+|-
T Consensus 11 tG~EYrYile 20 (26)
T 2xpn_B 11 TGEEYRYVLE 20 (26)
T ss_pred CCceEEEEee
Confidence 4678888874
No 10
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=12.90 E-value=2.3e+02 Score=26.33 Aligned_cols=54 Identities=24% Similarity=0.322 Sum_probs=36.6
Q ss_pred CCCccCcccCCCCCCCcccEEEeeecCCCCCcCeEEEEeccCCCcccceeeecCCceeeEEEcCCCCcccccEEeeCC
Q 019836 190 PACVDFPRINEHYMGRKQRYVYGSILENIAKVTGMIKFDLRAEPETGKTKLEVGGNVKGIFDLGPGRFGSEAVFVPRE 267 (335)
Q Consensus 190 ~~~~EfP~in~~~~g~~~ry~Y~~~~~~~~~~~~l~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~EPvFVPr~ 267 (335)
+...+||.-=. ...+|.-+|.++- ..-|.-+|++|++. .+. +++.+||||+-.+
T Consensus 256 ea~~DFPVamq--vs~kygviyviTK-----~G~ihlyDleTgt~--------------i~~---nrIS~d~iF~ta~ 309 (365)
T 2xzh_A 256 EAQNDFPVAMQ--ISEKHDVVFLITK-----YGYIHLYDLETGTC--------------IYM---NRISGETIFVTAP 309 (365)
T ss_dssp TCTTCCEEEEE--EETTTTEEEEEET-----TSEEEEEETTTCCE--------------EEE---EECCSSCEEEEEE
T ss_pred cccCCceEEEE--ecccCCEEEEEeC-----CcEEEEEEcccCcE--------------EEE---eccCCCceEEecc
Confidence 45678886211 2356788898873 34677889998773 333 4688999999863
Done!