Query 019836
Match_columns 335
No_of_seqs 147 out of 1020
Neff 7.7
Searched_HMMs 13730
Date Mon Mar 25 07:49:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019836.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019836hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1zaka2 g.41.2.1 (A:128-158) M 53.0 2.5 0.00018 23.5 1.2 15 17-31 3-17 (31)
2 d2ap1a2 c.55.1.10 (A:1-117) Pu 39.4 25 0.0018 24.4 5.5 32 25-57 1-32 (117)
3 d1m7ja2 b.92.1.6 (A:420-480) N 31.4 3.9 0.00028 26.2 -0.4 36 290-327 7-42 (61)
4 d1qksa2 b.70.2.1 (A:136-567) C 25.0 28 0.002 30.2 4.2 33 278-312 381-413 (432)
5 d2aa4a1 c.55.1.10 (A:1-119) N- 24.6 44 0.0032 23.1 4.6 32 26-57 2-33 (119)
6 d1z6ra2 c.55.1.10 (A:82-210) M 23.7 57 0.0041 22.7 5.2 35 23-57 2-36 (129)
7 d1hzua2 b.70.2.1 (A:118-543) C 20.0 36 0.0026 29.0 3.8 33 278-312 375-407 (426)
8 d2hoea3 c.55.1.10 (A:72-199) N 16.9 1.1E+02 0.0083 20.8 5.5 32 26-57 5-36 (128)
9 d2ghsa1 b.68.6.1 (A:20-314) Re 16.0 72 0.0052 25.8 4.7 39 18-61 206-244 (295)
10 d1zc6a1 c.55.1.5 (A:8-121) Pro 13.8 1.2E+02 0.0084 20.5 4.7 27 26-52 5-31 (114)
No 1
>d1zaka2 g.41.2.1 (A:128-158) Microbial and mitochondrial ADK, insert "zinc finger" domain {Maize (Zea mays) [TaxId: 4577]}
Probab=52.97 E-value=2.5 Score=23.45 Aligned_cols=15 Identities=27% Similarity=0.844 Sum_probs=11.9
Q ss_pred cccCCCCcEEEEEee
Q 019836 17 KIDPYTDEMFTFGYT 31 (335)
Q Consensus 17 k~Dp~tG~~~~~g~~ 31 (335)
++||.||++|-.-+.
T Consensus 3 R~DP~TG~iYH~~f~ 17 (31)
T d1zaka2 3 RLDPVTGKIYHLKYS 17 (31)
T ss_dssp EECTTTCCEEESSSS
T ss_pred cCCCCCCcEeEEecC
Confidence 479999999876654
No 2
>d2ap1a2 c.55.1.10 (A:1-117) Putative regulator protein YcfX {Salmonella typhimurium [TaxId: 90371]}
Probab=39.39 E-value=25 Score=24.40 Aligned_cols=32 Identities=9% Similarity=0.229 Sum_probs=26.5
Q ss_pred EEEEEeecCCCcEEEEEEcCCCCeEeeEEEecC
Q 019836 25 MFTFGYTQTPPYVTYRVISKDGFMHDPVPITMS 57 (335)
Q Consensus 25 ~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~p 57 (335)
|| +|++.++.++.+-.+|.+|++..+..++.|
T Consensus 1 My-iGiDiGgT~i~~~l~d~~g~i~~~~~~~t~ 32 (117)
T d2ap1a2 1 MY-YGFDIGGTKIALGVFDSTRRLQWEKRVPTP 32 (117)
T ss_dssp EE-EEEEECSSEEEEEEEETTCCEEEEEEEECC
T ss_pred CE-EEEEECcceEEEEEEeCCCCEEEEEEEeec
Confidence 45 899999899999999999999977666544
No 3
>d1m7ja2 b.92.1.6 (A:420-480) N-acyl-D-aminoacid amidohydrolase {Alcaligenes faecalis [TaxId: 511]}
Probab=31.42 E-value=3.9 Score=26.24 Aligned_cols=36 Identities=22% Similarity=0.421 Sum_probs=29.5
Q ss_pred ceEEEEEeCCCCCCCceEEEEcCCcCCCCccccccChh
Q 019836 290 KSAVYVIDAKTMSADPVAVIELPHRVPYGFHGIFLSEE 327 (335)
Q Consensus 290 ~s~L~IlDA~~l~~gPVAr~~LP~~iP~GfHG~w~~~~ 327 (335)
..+|+|||..++.+ -|..+-|...+.|++..|+...
T Consensus 7 ~ADlvvfDp~~i~d--~~~~~~~~~~~~Gi~~v~VnG~ 42 (61)
T d1m7ja2 7 YADLVVFDPATVAD--SATFEHPTERAAGIHSVYVNGA 42 (61)
T ss_dssp BCCEEEECTTTCBC--CCCSSSTTCCCBSEEEEEETTE
T ss_pred CCCEEEECHHHccC--cccccccccccceeEEEEECCE
Confidence 46899999999876 4777888888999998888754
No 4
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}
Probab=25.03 E-value=28 Score=30.18 Aligned_cols=33 Identities=30% Similarity=0.349 Sum_probs=25.4
Q ss_pred EEEEEEEeCCCCceEEEEEeCCCCCCCceEEEEcC
Q 019836 278 YLIFHVHDENTGKSAVYVIDAKTMSADPVAVIELP 312 (335)
Q Consensus 278 ~lL~~v~d~~~~~s~L~IlDA~~l~~gPVAr~~LP 312 (335)
+|++.++......+.++|+|++++++ ++++.-|
T Consensus 381 ~v~~S~~~~~~~~g~i~i~D~~T~k~--~~~i~~~ 413 (432)
T d1qksa2 381 EVWFSVWNGKDQESALVVVDDKTLEL--KHVIKDE 413 (432)
T ss_dssp EEEEEEECCTTSCCEEEEEETTTTEE--EEEECCT
T ss_pred EEEEEEecCCCCCCcEEEEECCCceE--EeEecCC
Confidence 66666666666778999999999986 6777664
No 5
>d2aa4a1 c.55.1.10 (A:1-119) N-acetylmannosamine kinase NanK {Escherichia coli [TaxId: 562]}
Probab=24.61 E-value=44 Score=23.12 Aligned_cols=32 Identities=16% Similarity=0.176 Sum_probs=26.3
Q ss_pred EEEEeecCCCcEEEEEEcCCCCeEeeEEEecC
Q 019836 26 FTFGYTQTPPYVTYRVISKDGFMHDPVPITMS 57 (335)
Q Consensus 26 ~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~p 57 (335)
...|++.++.++.+-.+|.+|++..+..++.|
T Consensus 2 ~~lgiDiGgT~i~~~l~d~~G~i~~~~~~~~~ 33 (119)
T d2aa4a1 2 TTLAIDIGGTKLAAALIGADGQIRDRRELPTP 33 (119)
T ss_dssp CEEEEEECSSEEEEEEECTTCCEEEEEEEECC
T ss_pred eEEEEEeCcCEEEEEEEcCCCCEEEeEEEecc
Confidence 35688888899999999999999877766554
No 6
>d1z6ra2 c.55.1.10 (A:82-210) Mlc protein {Escherichia coli [TaxId: 562]}
Probab=23.69 E-value=57 Score=22.68 Aligned_cols=35 Identities=0% Similarity=-0.094 Sum_probs=28.8
Q ss_pred CcEEEEEeecCCCcEEEEEEcCCCCeEeeEEEecC
Q 019836 23 DEMFTFGYTQTPPYVTYRVISKDGFMHDPVPITMS 57 (335)
Q Consensus 23 G~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~p 57 (335)
..++..|++.+..++.+..+|-+|+++.+..++++
T Consensus 2 e~~~~l~i~i~~~~i~~~l~Dl~G~~l~~~~~~~~ 36 (129)
T d1z6ra2 2 EAWHYLSLRISRGEIFLALRDLSSKLVVEESQELA 36 (129)
T ss_dssp TTCEEEEEEEETTEEEEEEEETTCCEEEEEEEECC
T ss_pred CceEEEEEEECCCEEEEEEEcCCCCEEEEEEeecc
Confidence 44567888888889999999999999987766665
No 7
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=19.99 E-value=36 Score=28.97 Aligned_cols=33 Identities=33% Similarity=0.458 Sum_probs=25.3
Q ss_pred EEEEEEEeCCCCceEEEEEeCCCCCCCceEEEEcC
Q 019836 278 YLIFHVHDENTGKSAVYVIDAKTMSADPVAVIELP 312 (335)
Q Consensus 278 ~lL~~v~d~~~~~s~L~IlDA~~l~~gPVAr~~LP 312 (335)
+|++.++......+.+.|+|+++++. ++++.-+
T Consensus 375 ~i~vs~~~~~~~~~~i~v~D~~T~k~--~~~i~~~ 407 (426)
T d1hzua2 375 EVWFSVWNGKNDSSALVVVDDKTLKL--KAVVKDP 407 (426)
T ss_dssp EEEEEECCCTTSCCEEEEEETTTTEE--EEEECCT
T ss_pred EEEEEEecCCCCCCeEEEEECCCCeE--EEEECCC
Confidence 67777777666778899999999984 6776543
No 8
>d2hoea3 c.55.1.10 (A:72-199) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]}
Probab=16.88 E-value=1.1e+02 Score=20.84 Aligned_cols=32 Identities=9% Similarity=0.079 Sum_probs=26.9
Q ss_pred EEEEeecCCCcEEEEEEcCCCCeEeeEEEecC
Q 019836 26 FTFGYTQTPPYVTYRVISKDGFMHDPVPITMS 57 (335)
Q Consensus 26 ~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~p 57 (335)
|.+|++.+..++.+..+|-+|+++.+..++++
T Consensus 5 ~~igidig~~~i~~~l~d~~G~il~~~~~~~~ 36 (128)
T d2hoea3 5 YVLGIEVTRDEIAACLIDASMNILAHEAHPLP 36 (128)
T ss_dssp EEEEEEECSSEEEEEEEETTCCEEEEEEEECC
T ss_pred EEEEEEECCCEEEEEEEcCCCCEEEEEEEecc
Confidence 56788888889999999999999977766654
No 9
>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}
Probab=15.98 E-value=72 Score=25.79 Aligned_cols=39 Identities=8% Similarity=0.074 Sum_probs=23.4
Q ss_pred ccCCCCcEEEEEeecCCCcEEEEEEcCCCCeEeeEEEecCCccc
Q 019836 18 IDPYTDEMFTFGYTQTPPYVTYRVISKDGFMHDPVPITMSAPIM 61 (335)
Q Consensus 18 ~Dp~tG~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~p~~~~ 61 (335)
+|. .|.+|.-.+..+ .+.+++++|+++.++.++.+.++.
T Consensus 206 vD~-~GnlWva~~~~g----~V~~~dp~G~~~~~i~lP~~~~T~ 244 (295)
T d2ghsa1 206 CDA-EGHIWNARWGEG----AVDRYDTDGNHIARYEVPGKQTTC 244 (295)
T ss_dssp ECT-TSCEEEEEETTT----EEEEECTTCCEEEEEECSCSBEEE
T ss_pred EcC-CCCEEeeeeCCC----ceEEecCCCcEeeEecCCCCceEE
Confidence 454 366664443322 477889999998766554444443
No 10
>d1zc6a1 c.55.1.5 (A:8-121) Probable N-acetylglucosamine kinase CV2896 {Chromobacterium violaceum [TaxId: 536]}
Probab=13.77 E-value=1.2e+02 Score=20.46 Aligned_cols=27 Identities=15% Similarity=0.119 Sum_probs=23.3
Q ss_pred EEEEeecCCCcEEEEEEcCCCCeEeeE
Q 019836 26 FTFGYTQTPPYVTYRVISKDGFMHDPV 52 (335)
Q Consensus 26 ~~~g~~~~~~~~~~~~~~~~g~~~~~~ 52 (335)
|..|++.++.+..+..+|.+|+++.+.
T Consensus 5 y~lGID~GGT~tk~~l~d~~G~il~~~ 31 (114)
T d1zc6a1 5 YLIGVDGGGTGTRIRLHASDGTPLAMA 31 (114)
T ss_dssp EEEEEEECSSCEEEEEEETTCCEEEEE
T ss_pred EEEEEEcCcceEEEEEEcCCCCEEEEE
Confidence 668999999999999999999988654
Done!