BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019837
(335 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1LWD|A Chain A, Crystal Structure Of Nadp-Dependent Isocitrate
Dehydrogenase From Porcine Heart Mitochondria
pdb|1LWD|B Chain B, Crystal Structure Of Nadp-Dependent Isocitrate
Dehydrogenase From Porcine Heart Mitochondria
Length = 413
Score = 504 bits (1299), Expect = e-143, Method: Compositional matrix adjust.
Identities = 236/322 (73%), Positives = 270/322 (83%), Gaps = 1/322 (0%)
Query: 2 AFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVE 61
A Q+IKVA P+VEMDGDEMTR+ W+ IK+KLI P +++ +KYFDLGLPNRD T+D+VT++
Sbjct: 1 ADQRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTID 60
Query: 62 SAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPR 121
SA AT KY+VA+KCATITPDEARV+EF LK+MWKSPNGTIRNIL GTVFREPIICKN+PR
Sbjct: 61 SALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPR 120
Query: 122 LIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVA 181
L+PGWTKPI IGRHA GDQY+ATD V+ G K+VF P+ + EVYNF GGV
Sbjct: 121 LVPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKIVFTPKDGSSAKQWEVYNFPA-GGVG 179
Query: 182 LSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKF 241
+ MYNTDESI FA + A QKKWPLY+STKNTILK YDGRFKDIFQE++E ++K+ F
Sbjct: 180 MGMYNTDESISGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDF 239
Query: 242 EAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPD 301
+ IWYEHRLIDDMVA LKS GG+VWACKNYDGDVQSD LAQGFGSLGLMTSVLVCPD
Sbjct: 240 DKYKIWYEHRLIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPD 299
Query: 302 GKTIEAEAAHGTVTRHYRVHQK 323
GKTIEAEAAHGTVTRHYR HQK
Sbjct: 300 GKTIEAEAAHGTVTRHYREHQK 321
>pdb|1T09|A Chain A, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase In Complex Nadp
pdb|1T09|B Chain B, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase In Complex Nadp
pdb|1T0L|A Chain A, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase In Complex With Nadp,
Isocitrate, And Calcium(2+)
pdb|1T0L|B Chain B, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase In Complex With Nadp,
Isocitrate, And Calcium(2+)
pdb|1T0L|C Chain C, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase In Complex With Nadp,
Isocitrate, And Calcium(2+)
pdb|1T0L|D Chain D, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase In Complex With Nadp,
Isocitrate, And Calcium(2+)
Length = 414
Score = 488 bits (1255), Expect = e-138, Method: Compositional matrix adjust.
Identities = 222/317 (70%), Positives = 265/317 (83%)
Query: 12 IVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNV 71
+VEM GDEMTR+ W+ IK+KLIFP++ELD+ +DLG+ NRDAT+D+VT ++AEA K+NV
Sbjct: 10 VVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKHNV 69
Query: 72 AIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPIC 131
+KCATITPDE RV+EF LKQMWKSPNGTIRNIL GTVFRE IICKN+PRL+ GW KPI
Sbjct: 70 GVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVSGWVKPII 129
Query: 132 IGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESI 191
IGRHA+GDQYRATD V+ GPGK+++ + P +K V+NF GGVA+ MYN D+SI
Sbjct: 130 IGRHAYGDQYRATDFVVPGPGKVEITYTPSDGTQKVTYLVHNFEEGGGVAMGMYNQDKSI 189
Query: 192 RAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHR 251
FA +S A K WPLYLSTKNTILKKYDGRFKDIFQE+Y+ +KS+FEA IWYEHR
Sbjct: 190 EDFAHSSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFEAQKIWYEHR 249
Query: 252 LIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAH 311
LIDDMVA A+KSEGG++WACKNYDGDVQSD +AQG+GSLG+MTSVLVCPDGKT+EAEAAH
Sbjct: 250 LIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLVCPDGKTVEAEAAH 309
Query: 312 GTVTRHYRVHQKDDQGS 328
GTVTRHYR++QK + S
Sbjct: 310 GTVTRHYRMYQKGQETS 326
>pdb|3MAS|B Chain B, Crystal Structure Of Heterodimeric R132h Mutant Of Human
Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
Complex With Nadp And Isocitrate
Length = 419
Score = 487 bits (1253), Expect = e-138, Method: Compositional matrix adjust.
Identities = 222/317 (70%), Positives = 265/317 (83%)
Query: 12 IVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNV 71
+VEM GDEMTR+ W+ IK+KLIFP++ELD+ +DLG+ NRDAT+D+VT ++AEA K+NV
Sbjct: 15 VVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKHNV 74
Query: 72 AIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPIC 131
+KCATITPDE RV+EF LKQMWKSPNGTIRNIL GTVFRE IICKN+PRL+ GW KPI
Sbjct: 75 GVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVSGWVKPII 134
Query: 132 IGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESI 191
IGRHA+GDQYRATD V+ GPGK+++ + P +K V+NF GGVA+ MYN D+SI
Sbjct: 135 IGRHAYGDQYRATDFVVPGPGKVEITYTPSDGTQKVTYLVHNFEEGGGVAMGMYNQDKSI 194
Query: 192 RAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHR 251
FA +S A K WPLYLSTKNTILKKYDGRFKDIFQE+Y+ +KS+FEA IWYEHR
Sbjct: 195 EDFAHSSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFEAQKIWYEHR 254
Query: 252 LIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAH 311
LIDDMVA A+KSEGG++WACKNYDGDVQSD +AQG+GSLG+MTSVLVCPDGKT+EAEAAH
Sbjct: 255 LIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLVCPDGKTVEAEAAH 314
Query: 312 GTVTRHYRVHQKDDQGS 328
GTVTRHYR++QK + S
Sbjct: 315 GTVTRHYRMYQKGQETS 331
>pdb|3INM|A Chain A, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase R132h Mutant In Complex With
Nadph, Alpha-Ketoglutarate And Calcium(2+)
pdb|3INM|B Chain B, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase R132h Mutant In Complex With
Nadph, Alpha-Ketoglutarate And Calcium(2+)
pdb|3INM|C Chain C, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase R132h Mutant In Complex With
Nadph, Alpha-Ketoglutarate And Calcium(2+)
Length = 425
Score = 485 bits (1249), Expect = e-137, Method: Compositional matrix adjust.
Identities = 221/317 (69%), Positives = 264/317 (83%)
Query: 12 IVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNV 71
+VEM GDEMTR+ W+ IK+KLIFP++ELD+ +DLG+ NRDAT+D+VT ++AEA K+NV
Sbjct: 10 VVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKHNV 69
Query: 72 AIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPIC 131
+KCATITPDE RV+EF LKQMWKSPNGTIRNIL GTVFRE IICKN+PRL+ GW KPI
Sbjct: 70 GVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVSGWVKPII 129
Query: 132 IGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESI 191
IG HA+GDQYRATD V+ GPGK+++ + P +K V+NF GGVA+ MYN D+SI
Sbjct: 130 IGHHAYGDQYRATDFVVPGPGKVEITYTPSDGTQKVTYLVHNFEEGGGVAMGMYNQDKSI 189
Query: 192 RAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHR 251
FA +S A K WPLYLSTKNTILKKYDGRFKDIFQE+Y+ +KS+FEA IWYEHR
Sbjct: 190 EDFAHSSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFEAQKIWYEHR 249
Query: 252 LIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAH 311
LIDDMVA A+KSEGG++WACKNYDGDVQSD +AQG+GSLG+MTSVLVCPDGKT+EAEAAH
Sbjct: 250 LIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLVCPDGKTVEAEAAH 309
Query: 312 GTVTRHYRVHQKDDQGS 328
GTVTRHYR++QK + S
Sbjct: 310 GTVTRHYRMYQKGQETS 326
>pdb|3MAP|A Chain A, Crystal Structure Of Homodimeric R132h Mutant Of Human
Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
Complex With Nadp And Isocitrate
pdb|3MAP|B Chain B, Crystal Structure Of Homodimeric R132h Mutant Of Human
Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
Complex With Nadp And Isocitrate
pdb|3MAR|A Chain A, Crystal Structure Of Homodimeric R132h Mutant Of Human
Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
Complex With Nadp
pdb|3MAR|B Chain B, Crystal Structure Of Homodimeric R132h Mutant Of Human
Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
Complex With Nadp
pdb|3MAS|A Chain A, Crystal Structure Of Heterodimeric R132h Mutant Of Human
Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
Complex With Nadp And Isocitrate
Length = 422
Score = 485 bits (1249), Expect = e-137, Method: Compositional matrix adjust.
Identities = 221/317 (69%), Positives = 264/317 (83%)
Query: 12 IVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNV 71
+VEM GDEMTR+ W+ IK+KLIFP++ELD+ +DLG+ NRDAT+D+VT ++AEA K+NV
Sbjct: 10 VVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKHNV 69
Query: 72 AIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPIC 131
+KCATITPDE RV+EF LKQMWKSPNGTIRNIL GTVFRE IICKN+PRL+ GW KPI
Sbjct: 70 GVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVSGWVKPII 129
Query: 132 IGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESI 191
IG HA+GDQYRATD V+ GPGK+++ + P +K V+NF GGVA+ MYN D+SI
Sbjct: 130 IGHHAYGDQYRATDFVVPGPGKVEITYTPSDGTQKVTYLVHNFEEGGGVAMGMYNQDKSI 189
Query: 192 RAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHR 251
FA +S A K WPLYLSTKNTILKKYDGRFKDIFQE+Y+ +KS+FEA IWYEHR
Sbjct: 190 EDFAHSSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFEAQKIWYEHR 249
Query: 252 LIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAH 311
LIDDMVA A+KSEGG++WACKNYDGDVQSD +AQG+GSLG+MTSVLVCPDGKT+EAEAAH
Sbjct: 250 LIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLVCPDGKTVEAEAAH 309
Query: 312 GTVTRHYRVHQKDDQGS 328
GTVTRHYR++QK + S
Sbjct: 310 GTVTRHYRMYQKGQETS 326
>pdb|2CMJ|A Chain A, Crystal Structure Of Mouse Cytosolic Isocitrate
Dehydrogenase
pdb|2CMJ|B Chain B, Crystal Structure Of Mouse Cytosolic Isocitrate
Dehydrogenase
pdb|2CMV|A Chain A, Crystal Structure Of Mouse Cytosolic Isocitrate
Dehydrogenase Complexed With Cadmium And Citrate
pdb|2CMV|B Chain B, Crystal Structure Of Mouse Cytosolic Isocitrate
Dehydrogenase Complexed With Cadmium And Citrate
Length = 410
Score = 480 bits (1235), Expect = e-136, Method: Compositional matrix adjust.
Identities = 219/317 (69%), Positives = 264/317 (83%)
Query: 12 IVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNV 71
+VEM GDEMTR+ W+ IK+KLI P++ELD+ +DLG+ NRDAT+D+VT ++AEA KYNV
Sbjct: 7 VVEMQGDEMTRIIWELIKEKLILPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKYNV 66
Query: 72 AIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPIC 131
+KCATITPDE RV+EF LKQMWKSPNGTIRNIL GTVFRE IICKN+PRL+ GW KPI
Sbjct: 67 GVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVTGWVKPII 126
Query: 132 IGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESI 191
IGRHA+GDQYRATD V+ GPGK+++ + P+ +K V++F GGVA+ MYN D+SI
Sbjct: 127 IGRHAYGDQYRATDFVVPGPGKVEITYTPKDGTQKVTYMVHDFEEGGGVAMGMYNQDKSI 186
Query: 192 RAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHR 251
FA +S A K WPLYLSTKNTILKKYDGRFKDIFQE+Y+ +KS+FEA I YEHR
Sbjct: 187 EDFAHSSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKKYKSQFEAQNICYEHR 246
Query: 252 LIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAH 311
LIDDMVA A+KSEGG++WACKNYDGDVQSD +AQG+GSLG+MTSVL+CPDGKT+EAEAAH
Sbjct: 247 LIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLICPDGKTVEAEAAH 306
Query: 312 GTVTRHYRVHQKDDQGS 328
GTVTRHYR++QK + S
Sbjct: 307 GTVTRHYRMYQKGQETS 323
>pdb|2QFV|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase
In Complex With Nadp(+)
pdb|2QFV|B Chain B, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase
In Complex With Nadp(+)
pdb|2QFV|C Chain C, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase
In Complex With Nadp(+)
pdb|2QFV|D Chain D, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase
In Complex With Nadp(+)
pdb|2QFW|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|B Chain B, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|C Chain C, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|D Chain D, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|E Chain E, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|F Chain F, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFX|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|B Chain B, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|C Chain C, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|D Chain D, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|E Chain E, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|F Chain F, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFY|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|B Chain B, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|C Chain C, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|D Chain D, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|E Chain E, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|F Chain F, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
Length = 427
Score = 469 bits (1207), Expect = e-132, Method: Compositional matrix adjust.
Identities = 224/330 (67%), Positives = 264/330 (80%), Gaps = 3/330 (0%)
Query: 2 AFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVE 61
AF KIKV P+VE+DGDEMTR+ W IK KLI P+L++D+KY+DL + +RDAT DK+T +
Sbjct: 15 AFSKIKVKQPVVELDGDEMTRIIWDKIKKKLILPYLDVDLKYYDLSVESRDATSDKITQD 74
Query: 62 SAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPR 121
+AEA KY V IKCATITPDEARVKEF L +MWKSPNGTIRNIL GTVFREPI+ +PR
Sbjct: 75 AAEAIKKYGVGIKCATITPDEARVKEFNLHKMWKSPNGTIRNILGGTVFREPIVIPRIPR 134
Query: 122 LIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKD--EKTELEVYNFTGEGG 179
L+P W KPI IGRHA GDQY+ATDT+I GPG L+LV+ P + L+VY++ G G
Sbjct: 135 LVPRWEKPIIIGRHAHGDQYKATDTLIPGPGSLELVYKPSDPTTAQPQTLKVYDYKG-SG 193
Query: 180 VALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKS 239
VA++MYNTDESI FA +S A KK L+LSTKNTILKKYDGRFKDIFQEVYEA +KS
Sbjct: 194 VAMAMYNTDESIEGFAHSSFKLAIDKKLNLFLSTKNTILKKYDGRFKDIFQEVYEAQYKS 253
Query: 240 KFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVC 299
KFE GI YEHRLIDDMVA +KS+GG++ A KNYDGDVQSD +AQGFGSLGLMTS+LV
Sbjct: 254 KFEQLGIHYEHRLIDDMVAQMIKSKGGFIMALKNYDGDVQSDIVAQGFGSLGLMTSILVT 313
Query: 300 PDGKTIEAEAAHGTVTRHYRVHQKDDQGSC 329
PDGKT E+EAAHGTVTRHYR +QK ++ S
Sbjct: 314 PDGKTFESEAAHGTVTRHYRKYQKGEETST 343
>pdb|3US8|A Chain A, Crystal Structure Of An Isocitrate Dehydrogenase From
Sinorhizobium Meliloti 1021
pdb|3US8|B Chain B, Crystal Structure Of An Isocitrate Dehydrogenase From
Sinorhizobium Meliloti 1021
Length = 427
Score = 467 bits (1201), Expect = e-132, Method: Compositional matrix adjust.
Identities = 225/326 (69%), Positives = 266/326 (81%), Gaps = 4/326 (1%)
Query: 5 KIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAE 64
KIKVANP+VE+DGDE TR+ W+ IKDKLI P+L+LD++Y+DLG+ NRDATDD+VT+++A
Sbjct: 26 KIKVANPVVELDGDEXTRIIWQFIKDKLIHPYLDLDLEYYDLGVENRDATDDQVTIDAAN 85
Query: 65 ATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIP 124
A K+ V +KCATITPDE RV+EF LK+ WKSPNGTIRNIL G +FREPIICKNVPRL+P
Sbjct: 86 AIKKHGVGVKCATITPDEGRVEEFKLKKXWKSPNGTIRNILGGVIFREPIICKNVPRLVP 145
Query: 125 GWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKT-ELEVYNFTGEGGVALS 183
GWTKPI +GRHAFGDQYRATD G GKL + FV G+D +T E +VY+ G GVAL+
Sbjct: 146 GWTKPIIVGRHAFGDQYRATDFKFPGKGKLSIKFV--GEDGQTIEHDVYDAPG-AGVALA 202
Query: 184 MYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEA 243
YN DESI FA AS N Q+K P+YLSTKNTILK YDGRFKDIFQ+V++ + ++F+A
Sbjct: 203 XYNLDESITEFARASFNYGLQRKVPVYLSTKNTILKAYDGRFKDIFQKVFDEEFAAQFKA 262
Query: 244 AGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGK 303
+WYEHRLIDD VA ALK GGYVWACKNYDGDVQSD +AQGFGSLGL TSVL PDGK
Sbjct: 263 EKLWYEHRLIDDXVASALKWSGGYVWACKNYDGDVQSDIVAQGFGSLGLXTSVLXTPDGK 322
Query: 304 TIEAEAAHGTVTRHYRVHQKDDQGSC 329
T+EAEAAHGTVTRHYR HQK ++ S
Sbjct: 323 TVEAEAAHGTVTRHYRQHQKGEETST 348
>pdb|4HCX|A Chain A, Structure Of Icdh-1 From M.tuberculosis Complexed With
Nadph & Mn2+
pdb|4HCX|B Chain B, Structure Of Icdh-1 From M.tuberculosis Complexed With
Nadph & Mn2+
Length = 409
Score = 450 bits (1158), Expect = e-127, Method: Compositional matrix adjust.
Identities = 213/318 (66%), Positives = 252/318 (79%)
Query: 5 KIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAE 64
KIKV+ P+VE+DGDEMTRV WK IKD LI P+L++ + Y+DLG+ +RDATDD+VT+++A
Sbjct: 6 KIKVSGPVVELDGDEMTRVIWKLIKDMLILPYLDIRLDYYDLGIEHRDATDDQVTIDAAY 65
Query: 65 ATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIP 124
A K+ V +KCATITPDEARV+EF LK+MW SPNGTIRNIL GT+FREPI+ NVPRL+P
Sbjct: 66 AIKKHGVGVKCATITPDEARVEEFNLKKMWLSPNGTIRNILGGTIFREPIVISNVPRLVP 125
Query: 125 GWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSM 184
GWTKPI IGRHAFGDQYRAT+ + PG + L F P E+ + +GGV L M
Sbjct: 126 GWTKPIVIGRHAFGDQYRATNFKVDQPGTVTLTFTPADGSAPIVHEMVSIPEDGGVVLGM 185
Query: 185 YNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAA 244
YN ESIR FA AS + KWP+YLSTKNTILK YDG FKD F+ VYE +K++FEAA
Sbjct: 186 YNFKESIRDFARASFSYGLNAKWPVYLSTKNTILKAYDGMFKDEFERVYEEEFKAQFEAA 245
Query: 245 GIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKT 304
G+ YEHRLIDDMVA LK EGGYVWACKNYDGDVQSD +AQG+GSLGLMTSVL+ DGKT
Sbjct: 246 GLTYEHRLIDDMVAACLKWEGGYVWACKNYDGDVQSDTVAQGYGSLGLMTSVLMTADGKT 305
Query: 305 IEAEAAHGTVTRHYRVHQ 322
+EAEAAHGTVTRHYR +Q
Sbjct: 306 VEAEAAHGTVTRHYRQYQ 323
>pdb|4AOY|A Chain A, Open Ctidh. The Complex Structures Of Isocitrate
Dehydrogenase From Clostridium Thermocellum And
Desulfotalea Psychrophila, Support A New Active Site
Locking Mechanism
pdb|4AOY|B Chain B, Open Ctidh. The Complex Structures Of Isocitrate
Dehydrogenase From Clostridium Thermocellum And
Desulfotalea Psychrophila, Support A New Active Site
Locking Mechanism
pdb|4AOY|C Chain C, Open Ctidh. The Complex Structures Of Isocitrate
Dehydrogenase From Clostridium Thermocellum And
Desulfotalea Psychrophila, Support A New Active Site
Locking Mechanism
pdb|4AOY|D Chain D, Open Ctidh. The Complex Structures Of Isocitrate
Dehydrogenase From Clostridium Thermocellum And
Desulfotalea Psychrophila, Support A New Active Site
Locking Mechanism
pdb|4AOU|A Chain A, Ctidh Bound To Nadp. The Complex Structures Of Isocitrate
Dehydrogenase From Clostridium Thermocellum And
Desulfotalea Psychrophila, Support A New Active Site
Locking Mechanism
Length = 402
Score = 374 bits (959), Expect = e-104, Method: Compositional matrix adjust.
Identities = 184/336 (54%), Positives = 235/336 (69%), Gaps = 7/336 (2%)
Query: 3 FQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVES 62
KIK+ P+VEMDGDEMTR+ W+ IK+ L+ P++EL+ +Y+DLGL NRD T+D+VT+++
Sbjct: 1 MSKIKMKVPLVEMDGDEMTRIIWRLIKENLLEPYIELNTEYYDLGLENRDKTEDQVTIDA 60
Query: 63 AEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRL 122
A A KY V +KCATITP+ RV+E+ LK+MWKSPNGTIR IL+GTVFR PI+ ++
Sbjct: 61 ARAIQKYGVGVKCATITPNAQRVEEYNLKKMWKSPNGTIRAILDGTVFRAPIVVNSIKPF 120
Query: 123 IPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVAL 182
+ GW KPI I RHA+GD Y+ + + GK +LVF E E + ++ F G GV +
Sbjct: 121 VKGWKKPISIARHAYGDVYKNVEYYVPSAGKAELVFTSEN-GEVSRQTIHEFDGP-GVIM 178
Query: 183 SMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFE 242
M+NTD+SIR+FA A N A L+ STK+TI K YD RFKDIFQE+YE +K KFE
Sbjct: 179 GMHNTDKSIRSFARACFNYALDMNQDLWFSTKDTISKTYDHRFKDIFQEIYENEYKEKFE 238
Query: 243 AAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDG 302
A + Y + LIDD VA ++SEGG VWACKNYDGDV SD +A FGSL +MTSVLV PDG
Sbjct: 239 AKNLQYFYTLIDDAVARIIRSEGGMVWACKNYDGDVMSDMVASAFGSLAMMTSVLVSPDG 298
Query: 303 KTIEAEAAHGTVTRHYRVHQKDDQGS----CTYYPW 334
K E EAAHGTVTRHY H K ++ S T + W
Sbjct: 299 K-YEFEAAHGTVTRHYYKHLKGEETSTNSMATIFAW 333
>pdb|1ZOR|A Chain A, Isocitrate Dehydrogenase From The Hyperthermophile
Thermotoga Maritima
pdb|1ZOR|B Chain B, Isocitrate Dehydrogenase From The Hyperthermophile
Thermotoga Maritima
Length = 399
Score = 359 bits (922), Expect = e-99, Method: Compositional matrix adjust.
Identities = 179/328 (54%), Positives = 235/328 (71%), Gaps = 6/328 (1%)
Query: 3 FQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVES 62
+K+KV NPIVE+DGDEM RV WK IK+KLI P+L++ + YFDLG+ RD TDD++T+E+
Sbjct: 1 MEKVKVKNPIVELDGDEMARVMWKMIKEKLILPYLDIQLVYFDLGIKKRDETDDQITIEA 60
Query: 63 AEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRL 122
A+A KY V +KCATITPD RVKE+ LK+ WKSPN TIR L+GTVFR+PI+ KNVP L
Sbjct: 61 AKAIKKYGVGVKCATITPDAERVKEYNLKKAWKSPNATIRAYLDGTVFRKPIMVKNVPPL 120
Query: 123 IPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVAL 182
+ W KPI IGRHA+GD Y A + ++GP +++LV K+ KT L V+ F G GV +
Sbjct: 121 VKRWKKPIIIGRHAYGDIYNAVEAKVEGPAEVELVV--RNKENKT-LLVHKFEG-NGVVM 176
Query: 183 SMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFE 242
+M+N ++SIR+FA++ +N A +K ++ +TK+TI K Y FKDIFQE + K + E
Sbjct: 177 AMHNLEKSIRSFAQSCINYAISEKVDIWFATKDTISKVYHAYFKDIFQEEVDKR-KEELE 235
Query: 243 AAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDG 302
AG+ Y + LIDD A L+SEGG +WAC NY+GD+ SD +A GFGSLGLMTSVLV PDG
Sbjct: 236 KAGVNYRYMLIDDAAAQILRSEGGMLWACMNYEGDIMSDMIASGFGSLGLMTSVLVSPDG 295
Query: 303 KTIEAEAAHGTVTRHYRVHQKDDQGSCT 330
E EAAHGTV RHY + K ++ S
Sbjct: 296 -VYEFEAAHGTVRRHYYRYLKGEKTSTN 322
>pdb|2UXQ|A Chain A, Isocitrate Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila: Biochemical Properties And
Crystal Structure Analysis
pdb|2UXQ|B Chain B, Isocitrate Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila: Biochemical Properties And
Crystal Structure Analysis
pdb|2UXQ|C Chain C, Isocitrate Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila: Biochemical Properties And
Crystal Structure Analysis
pdb|2UXQ|D Chain D, Isocitrate Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila: Biochemical Properties And
Crystal Structure Analysis
pdb|2UXR|A Chain A, Complex With Isocitrate And The Protein Isocitrate
Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila
pdb|2UXR|B Chain B, Complex With Isocitrate And The Protein Isocitrate
Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila
pdb|4AOV|A Chain A, Dpidh-Nadp. The Complex Structures Of Isocitrate
Dehydrogenase From Clostridium Thermocellum And
Desulfotalea Psychrophila, Support A New Active Site
Locking Mechanism
Length = 402
Score = 325 bits (834), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 162/326 (49%), Positives = 224/326 (68%), Gaps = 7/326 (2%)
Query: 5 KIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAE 64
KI++ P+VE+DGDEMTRV W IKDKL+ PF++L +Y+DLG+ RD T+D++T+++AE
Sbjct: 2 KIQMKTPLVELDGDEMTRVLWPLIKDKLLLPFIDLQTEYYDLGIEERDRTNDQITIDAAE 61
Query: 65 ATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIP 124
A KY V +K ATITP++ RV+E+ LK+ WKSPN T+R +L+GTVFR+PI+ KN+ +
Sbjct: 62 AIKKYGVGVKNATITPNQDRVEEYGLKEQWKSPNATVRAMLDGTVFRKPIMVKNIKPSVR 121
Query: 125 GWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDE--KTELEVYNFTGEGGVAL 182
W KPI +GRHA+GD Y+ + + GKL++V + E +T +EV E +
Sbjct: 122 SWQKPIVVGRHAYGDFYKNAEIFAEAGGKLEIVVTDKNGKETRQTIMEV----DEPAIVQ 177
Query: 183 SMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFE 242
++NT SI FA A + +K + +TK+TI K+YD RFK IF+E++ +K KF
Sbjct: 178 GIHNTVASIGHFARACFEYSLDQKIDCWFATKDTISKQYDQRFKIIFEEIFAQEYKEKFA 237
Query: 243 AAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDG 302
AAGI Y + LIDD+VA +K+EGG +WACKNYDGDV SD +A FGSL +M+SVLV P G
Sbjct: 238 AAGIEYFYTLIDDVVARMMKTEGGMLWACKNYDGDVMSDMVASAFGSLAMMSSVLVSPYG 297
Query: 303 KTIEAEAAHGTVTRHYRVHQKDDQGS 328
E EAAHGTV RHY H K ++ S
Sbjct: 298 -YFEYEAAHGTVQRHYYQHLKGERTS 322
>pdb|1HJ6|A Chain A, Isocitrate Dehydrogenase S113e Mutant Complexed With
Isopropylmalate, Nadp+ And Magnesium (Flash-Cooled)
pdb|7ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
pdb|8ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
Length = 416
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 65/157 (41%), Gaps = 18/157 (11%)
Query: 187 TDESIRAFAEASMNTAYQK-KWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAG 245
++E + A++ A + + L K I+K +G FKD ++ + + G
Sbjct: 202 SEEGTKRLVRAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGG 261
Query: 246 IWYEHR--------LIDDMVAYA------LKSEGGYVWACKNYDGDVQSDFLAQGFGSLG 291
W + + +I D++A A L+ V AC N +GD SD LA G +G
Sbjct: 262 PWLKVKNPNTGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIG 321
Query: 292 LMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKDDQGS 328
+ + + EA HGT + Y K + GS
Sbjct: 322 IAPGANIGDECALF--EATHGTAPK-YAGQDKVNPGS 355
>pdb|4ICD|A Chain A, Regulation Of Isocitrate Dehydrogenase By Phosphorylation
Involves No Long-Range Conformational Change In The Free
Enzyme
Length = 416
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 65/157 (41%), Gaps = 18/157 (11%)
Query: 187 TDESIRAFAEASMNTAYQK-KWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAG 245
++E + A++ A + + L K I+K +G FKD ++ + + G
Sbjct: 202 SEEGTKRLVRAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGG 261
Query: 246 IWYEHR--------LIDDMVAYA------LKSEGGYVWACKNYDGDVQSDFLAQGFGSLG 291
W + + +I D++A A L+ V AC N +GD SD LA G +G
Sbjct: 262 PWLKVKNPNTGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIG 321
Query: 292 LMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKDDQGS 328
+ + + EA HGT + Y K + GS
Sbjct: 322 IAPGANIGDECALF--EATHGTAPK-YAGQDKVNPGS 355
>pdb|6ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
Length = 416
Score = 35.4 bits (80), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 65/157 (41%), Gaps = 18/157 (11%)
Query: 187 TDESIRAFAEASMNTAY-QKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAG 245
++E + A++ A + + L K I+K +G FKD ++ + + G
Sbjct: 202 SEEGTKRLVRAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGG 261
Query: 246 IWYEHR--------LIDDMVAYA------LKSEGGYVWACKNYDGDVQSDFLAQGFGSLG 291
W + + +I D++A A L+ V AC N +GD SD LA G +G
Sbjct: 262 PWLKVKNPNTGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIG 321
Query: 292 LMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKDDQGS 328
+ + + EA HGT + Y K + GS
Sbjct: 322 IAPGANIGDECALF--EATHGTAPK-YAGQDKVNPGS 355
>pdb|1GRO|A Chain A, Regulatory And Catalytic Mechanisms In Escherichia Coli
Isocitrate Dehydrogenase: Multiple Roles For N115
Length = 416
Score = 35.4 bits (80), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 65/157 (41%), Gaps = 18/157 (11%)
Query: 187 TDESIRAFAEASMNTAYQK-KWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAG 245
++E + A++ A + + L K I+K +G FKD ++ + + G
Sbjct: 202 SEEGTKRLVRAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGG 261
Query: 246 IWYEHR--------LIDDMVAYA------LKSEGGYVWACKNYDGDVQSDFLAQGFGSLG 291
W + + +I D++A A L+ V AC N +GD SD LA G +G
Sbjct: 262 PWLKVKNPNTGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIG 321
Query: 292 LMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKDDQGS 328
+ + + EA HGT + Y K + GS
Sbjct: 322 IAPGANIGDECALF--EATHGTAPK-YAGQDKVNPGS 355
>pdb|1IDD|A Chain A, Isocitrate Dehydrogenase Y160f Mutant Apo Enzyme
pdb|1IDE|A Chain A, Isocitrate Dehydrogenase Y160f Mutant Steady-State
Intermediate Complex (Laue Determination)
Length = 416
Score = 35.4 bits (80), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 65/157 (41%), Gaps = 18/157 (11%)
Query: 187 TDESIRAFAEASMNTAYQK-KWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAG 245
++E + A++ A + + L K I+K +G FKD ++ + + G
Sbjct: 202 SEEGTKRLVRAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGG 261
Query: 246 IWYEHR--------LIDDMVAYA------LKSEGGYVWACKNYDGDVQSDFLAQGFGSLG 291
W + + +I D++A A L+ V AC N +GD SD LA G +G
Sbjct: 262 PWLKVKNPNTGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIG 321
Query: 292 LMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKDDQGS 328
+ + + EA HGT + Y K + GS
Sbjct: 322 IAPGANIGDECALF--EATHGTAPK-YAGQDKVNPGS 355
>pdb|1P8F|A Chain A, A Four Location Model To Explain The Stereospecificity Of
Proteins.
pdb|1PB1|A Chain A, A Four Location Model To Explain The Stereospecificity Of
Proteins.
pdb|1PB3|A Chain A, Sites Of Binding And Orientation In A Four Location Model
For Protein Stereospecificity.
pdb|1AI2|A Chain A, Isocitrate Dehydrogenase Complexed With Isocitrate, Nadp+,
And Calcium (flash-cooled)
pdb|1AI3|A Chain A, Orbital Steering In The Catalytic Power Of Enzymes: Small
Structural Changes With Large Catalytic Consequences
pdb|1IKA|A Chain A, Structure Of Isocitrate Dehydrogenase With
Alpha-Ketoglutarate At 2.7 Angstroms Resolution:
Conformational Changes Induced By Decarboxylation Of
Isocitrate
pdb|1SJS|A Chain A, Access To Phosphorylation In Isocitrate Dehydrogenase May
Occur By Domain Shifting
pdb|3ICD|A Chain A, Structure Of A Bacterial Enzyme Regulated By
Phosphorylation, Isocitrate Dehydrogenase
pdb|5ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
pdb|9ICD|A Chain A, Catalytic Mechanism Of Nadp+-Dependent Isocitrate
Dehydrogenase: Implications From The Structures Of
Magnesium-Isocitrate And Nadp+ Complexes
pdb|3LCB|C Chain C, The Crystal Structure Of Isocitrate Dehydrogenase
KinasePHOSPHATASE In Complex With Its Substrate,
Isocitrate Dehydrogenase, From Escherichia Coli.
pdb|3LCB|D Chain D, The Crystal Structure Of Isocitrate Dehydrogenase
KinasePHOSPHATASE In Complex With Its Substrate,
Isocitrate Dehydrogenase, From Escherichia Coli.
pdb|4AJ3|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase In
Complex With Isocitrate, Calcium(Ii) And Nadp - The
Pseudo-Michaelis Complex
pdb|4AJA|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase In
Complex With Isocitrate, Calcium(Ii) And Thionadp
Length = 416
Score = 35.4 bits (80), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 65/157 (41%), Gaps = 18/157 (11%)
Query: 187 TDESIRAFAEASMNTAYQK-KWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAG 245
++E + A++ A + + L K I+K +G FKD ++ + + G
Sbjct: 202 SEEGTKRLVRAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGG 261
Query: 246 IWYEHR--------LIDDMVAYA------LKSEGGYVWACKNYDGDVQSDFLAQGFGSLG 291
W + + +I D++A A L+ V AC N +GD SD LA G +G
Sbjct: 262 PWLKVKNPNTGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIG 321
Query: 292 LMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKDDQGS 328
+ + + EA HGT + Y K + GS
Sbjct: 322 IAPGANIGDECALF--EATHGTAPK-YAGQDKVNPGS 355
>pdb|4AJB|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Isocitrate, Magnesium(Ii) And
Thionadp
pdb|4AJC|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Alpha-Ketoglutarate, Calcium(Ii)
And Adenine Nucleotide Phosphate
pdb|4AJR|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Alpha-Ketoglutarate,
Magnesium(Ii) And Nadph - The Product Complex
pdb|4AJS|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Isocitrate, Magnesium(Ii),
Adenosine 2',5'-Biphosphate And
Ribosylnicotinamide-5'-Phosphate
Length = 416
Score = 35.4 bits (80), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 65/157 (41%), Gaps = 18/157 (11%)
Query: 187 TDESIRAFAEASMNTAYQK-KWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAG 245
++E + A++ A + + L K I+K +G FKD ++ + + G
Sbjct: 202 SEEGTKRLVRAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGG 261
Query: 246 IWYEHR--------LIDDMVAYA------LKSEGGYVWACKNYDGDVQSDFLAQGFGSLG 291
W + + +I D++A A L+ V AC N +GD SD LA G +G
Sbjct: 262 PWLKVKNPNTGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIG 321
Query: 292 LMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKDDQGS 328
+ + + EA HGT + Y K + GS
Sbjct: 322 IAPGANIGDECALF--EATHGTAPK-YAGQDKVNPGS 355
>pdb|1GRP|A Chain A, Regulatory And Catalytic Mechanisms In Escherichia Coli
Isocitrate Dehydrogenase: Multiple Roles For N115
Length = 416
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 65/157 (41%), Gaps = 18/157 (11%)
Query: 187 TDESIRAFAEASMNTAYQK-KWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAG 245
++E + A++ A + + L K I+K +G FKD ++ + + G
Sbjct: 202 SEEGTKRLVRAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGG 261
Query: 246 IWYEHR--------LIDDMVAYA------LKSEGGYVWACKNYDGDVQSDFLAQGFGSLG 291
W + + +I D++A A L+ V AC N +GD SD LA G +G
Sbjct: 262 PWLKVKNPNTGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIG 321
Query: 292 LMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKDDQGS 328
+ + + EA HGT + Y K + GS
Sbjct: 322 IAPGANIGDECALF--EATHGTAPK-YAGQDKVNPGS 355
>pdb|1BL5|A Chain A, Isocitrate Dehydrogenase From E. Coli Single Turnover Laue
Structure Of Rate-limited Product Complex, 10 Msec Time
Resolution
Length = 414
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 65/157 (41%), Gaps = 18/157 (11%)
Query: 187 TDESIRAFAEASMNTAYQK-KWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAG 245
++E + A++ A + + L K I+K +G FKD ++ + + G
Sbjct: 200 SEEGTKRLVRAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGG 259
Query: 246 IWYEHR--------LIDDMVAYA------LKSEGGYVWACKNYDGDVQSDFLAQGFGSLG 291
W + + +I D++A A L+ V AC N +GD SD LA G +G
Sbjct: 260 PWLKVKNPNTGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIG 319
Query: 292 LMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKDDQGS 328
+ + + EA HGT + Y K + GS
Sbjct: 320 IAPGANIGDECALF--EATHGTAPK-YAGQDKVNPGS 353
>pdb|2D1C|A Chain A, Crystal Structure Of Tt0538 Protein From Thermus
Thermophilus Hb8
pdb|2D1C|B Chain B, Crystal Structure Of Tt0538 Protein From Thermus
Thermophilus Hb8
Length = 496
Score = 35.0 bits (79), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 12/131 (9%)
Query: 188 DESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIW 247
E I FA +KK ++ +TK+ I+K +G K F++V + E I
Sbjct: 167 SEKIVRFAFELARAEGRKK--VHCATKSNIMKLAEGTLKRAFEQVAQ-------EYPDIE 217
Query: 248 YEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIE 306
H ++D+ +K + V N +GD+ SD + G LG S + +
Sbjct: 218 AVHIIVDNAAHQLVKRPEQFEVIVTTNMNGDILSDLTSGLIGGLGFAPSANIGNEVAIF- 276
Query: 307 AEAAHGTVTRH 317
EA HG+ ++
Sbjct: 277 -EAVHGSAPKY 286
>pdb|1CW7|A Chain A, Low Temperature Structure Of Wild-Type Idh Complexed With
Mg- Isocitrate
Length = 416
Score = 34.3 bits (77), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 64/157 (40%), Gaps = 18/157 (11%)
Query: 187 TDESIRAFAEASMNTAYQK-KWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAG 245
++E + A++ A + + L K I+K +G FKD ++ + + G
Sbjct: 202 SEEGTKRLVRAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGG 261
Query: 246 IWYEHR--------LIDDMVAYA------LKSEGGYVWACKNYDGDVQSDFLAQGFGSLG 291
W + + +I D++A A L+ V AC N +GD SD LA G +G
Sbjct: 262 PWLKVKNPNTGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIG 321
Query: 292 LMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKDDQGS 328
+ + + EA HGT Y K + GS
Sbjct: 322 IAPGANIGDECALF--EATHGTAP-AYAGQDKVNPGS 355
>pdb|1DR0|A Chain A, Structure Of Modified 3-isopropylmalate Dehydrogenase At
The C- Terminus, Hd708
pdb|1DR0|B Chain B, Structure Of Modified 3-isopropylmalate Dehydrogenase At
The C- Terminus, Hd708
Length = 346
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 237 WKSKFEAAGIWY-----EHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSL 290
W+ E G Y EH+ +D M + ++S + V N GD+ SD + GSL
Sbjct: 195 WRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSL 254
Query: 291 GLMTS 295
GL+ S
Sbjct: 255 GLLPS 259
>pdb|1OSJ|A Chain A, Structure Of 3-isopropylmalate Dehydrogenase
pdb|1OSJ|B Chain B, Structure Of 3-isopropylmalate Dehydrogenase
Length = 345
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 237 WKSKFEAAGIWY-----EHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSL 290
W+ E G Y EH+ +D M + ++S + V N GD+ SD + GSL
Sbjct: 195 WRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSL 254
Query: 291 GLMTS 295
GL+ S
Sbjct: 255 GLLPS 259
>pdb|1G2U|A Chain A, The Structure Of The Mutant, A172v, Of 3-Isopropylmalate
Dehydrogenase From Thermus Thermophilus Hb8 : Its
Thermostability And Structure
Length = 345
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 237 WKSKFEAAGIWY-----EHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSL 290
W+ E G Y EH+ +D M + ++S + V N GD+ SD + GSL
Sbjct: 195 WRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSL 254
Query: 291 GLMTS 295
GL+ S
Sbjct: 255 GLLPS 259
>pdb|1GC8|A Chain A, The Crystal Structure Of Thermus Thermophilus
3-Isopropylmalate Dehydrogenase Mutated At 172th From
Ala To Phe
pdb|1GC8|B Chain B, The Crystal Structure Of Thermus Thermophilus
3-Isopropylmalate Dehydrogenase Mutated At 172th From
Ala To Phe
Length = 345
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 237 WKSKFEAAGIWY-----EHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSL 290
W+ E G Y EH+ +D M + ++S + V N GD+ SD + GSL
Sbjct: 195 WRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSL 254
Query: 291 GLMTS 295
GL+ S
Sbjct: 255 GLLPS 259
>pdb|1OSI|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1OSI|B Chain B, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1OSI|C Chain C, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1OSI|D Chain D, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1HEX|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase In Complex
With Nad+: Ligand-Induced Loop-Closing And Mechanism For
Cofactor Specificity
pdb|1XAA|A Chain A, 3-Isopropylmalate Dehydrogenase, Low Temperature (100k)
Structure
pdb|1XAB|A Chain A, 3-Isopropylmalate Dehydrogenase, Low Temperature (150k)
Structure
pdb|2ZTW|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase In Complex
With The Inhibitor And Nad+
Length = 345
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 237 WKSKFEAAGIWY-----EHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSL 290
W+ E G Y EH+ +D M + ++S + V N GD+ SD + GSL
Sbjct: 195 WRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSL 254
Query: 291 GLMTS 295
GL+ S
Sbjct: 255 GLLPS 259
>pdb|1XAC|A Chain A, Chimera Isopropylmalate Dehydrogenase Between Bacillus
Subtilis (M) And Thermus Thermophilus (T) From
N-Terminal: 20% T Middle 20% M Residual 60% T, Mutated
At S82r. Low Temperature (100k) Structure.
pdb|1XAD|A Chain A, Chimera Isopropylmalate Dehydrogenase Between Bacillus
Subtilis (M) And Thermus Thermophilus (T) From
N-Terminal: 20% T Middle 20% M Residual 60% T, Mutated
At S82r. Low Temperature (150k) Structure
Length = 345
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 237 WKSKFEAAGIWY-----EHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSL 290
W+ E G Y EH+ +D M + ++S + V N GD+ SD + GSL
Sbjct: 195 WRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSL 254
Query: 291 GLMTS 295
GL+ S
Sbjct: 255 GLLPS 259
>pdb|1DPZ|A Chain A, Stucture Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd711
pdb|1DPZ|B Chain B, Stucture Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd711
Length = 349
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 237 WKSKFEAAGIWY-----EHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSL 290
W+ E G Y EH+ +D M + ++S + V N GD+ SD + GSL
Sbjct: 195 WRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSL 254
Query: 291 GLMTS 295
GL+ S
Sbjct: 255 GLLPS 259
>pdb|1GC9|A Chain A, The Crystal Structure Of Thermus Thermophilus
3-Isopropylmalate Dehydrogenase Mutated At 172th From
Ala To Gly
Length = 345
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 237 WKSKFEAAGIWY-----EHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSL 290
W+ E G Y EH+ +D M + ++S + V N GD+ SD + GSL
Sbjct: 195 WRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSL 254
Query: 291 GLMTS 295
GL+ S
Sbjct: 255 GLLPS 259
>pdb|2Y3Z|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Apo Enzyme
pdb|2Y40|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Mn
pdb|2Y40|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Mn
pdb|2Y41|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Ipm And Mn
pdb|2Y41|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Ipm And Mn
pdb|2Y42|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|2Y42|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|2Y42|C Chain C, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|2Y42|D Chain D, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|4F7I|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
pdb|4F7I|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
pdb|4F7I|C Chain C, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
pdb|4F7I|D Chain D, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
Length = 359
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 237 WKSKFEAAGIWY-----EHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSL 290
W+ E G Y EH+ +D M + ++S + V N GD+ SD + GSL
Sbjct: 198 WRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSL 257
Query: 291 GLMTS 295
GL+ S
Sbjct: 258 GLLPS 262
>pdb|1IPD|A Chain A, Three-Dimensional Structure Of A Highly Thermostable
Enzyme, 3- Isopropylmalate Dehydrogenase Of Thermus
Thermophilus At 2.2 Angstroms Resolution
Length = 345
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 237 WKSKFEAAGIWY-----EHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSL 290
W+ E G Y EH+ +D M + ++S + V N GD+ SD + GSL
Sbjct: 195 WRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSL 254
Query: 291 GLMTS 295
GL+ S
Sbjct: 255 GLLPS 259
>pdb|1ISO|A Chain A, Isocitrate Dehydrogenase: Structure Of An Engineered
Nadp+--> Nad+ Specificity-Reversal Mutant
Length = 416
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 49/117 (41%), Gaps = 16/117 (13%)
Query: 211 LSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHR--------LIDDMVAYA-- 260
L K I+K +G FKD ++ + + G W + + +I D++A A
Sbjct: 227 LVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFL 286
Query: 261 ----LKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGT 313
L+ V AC N +GD SD LA G +G+ + + EA HGT
Sbjct: 287 QQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDEYALF--EATHGT 341
>pdb|1DR8|A Chain A, Structure Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd177
pdb|1DR8|B Chain B, Structure Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd177
Length = 344
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 237 WKSKFEAAGIWY-----EHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSL 290
W+ E G Y EH+ +D M + ++S + V N GD+ SD + GSL
Sbjct: 195 WRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSL 254
Query: 291 GLMTS 295
GL+ S
Sbjct: 255 GLLPS 259
>pdb|1CW1|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase Mutant K230m
Bound To Isocitrate And Mn2+
pdb|1CW4|A Chain A, Crystal Structure Of K230m Isocitrate Dehydrogenase In
Complex With Alpha-Ketoglutarate
pdb|1IDC|A Chain A, Isocitrate Dehydrogenase From E.coli (mutant K230m),
Steady-state Intermediate Complex Determined By Laue
Crystallography
pdb|1IDF|A Chain A, Isocitrate Dehydrogenase K230m Mutant Apo Enzyme
Length = 416
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 64/157 (40%), Gaps = 18/157 (11%)
Query: 187 TDESIRAFAEASMNTAYQK-KWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAG 245
++E + A++ A + + L I+K +G FKD ++ + + G
Sbjct: 202 SEEGTKRLVRAAIEYAIANDRDSVTLVHMGNIMKFTEGAFKDWGYQLAREEFGGELIDGG 261
Query: 246 IWYEHR--------LIDDMVAYA------LKSEGGYVWACKNYDGDVQSDFLAQGFGSLG 291
W + + +I D++A A L+ V AC N +GD SD LA G +G
Sbjct: 262 PWLKVKNPNTGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIG 321
Query: 292 LMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKDDQGS 328
+ + + EA HGT + Y K + GS
Sbjct: 322 IAPGANIGDECALF--EATHGTAPK-YAGQDKVNPGS 355
>pdb|1IDM|A Chain A, 3-Isopropylmalate Dehydrogenase, Loop-Deleted Chimera
Length = 343
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 237 WKSKFEAAGIWY-----EHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSL 290
W+ E G Y EH+ +D M + ++S + V N GD+ SD + GSL
Sbjct: 193 WRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSL 252
Query: 291 GLMTS 295
GL+ S
Sbjct: 253 GLLPS 257
>pdb|3VML|A Chain A, Chimera 3-Isopropylmalate Dehydrogenase Between Shewanella
Oneidensis Mr-1 (O) And Shewanella Benthica Db21 Mt-2
(M) From N-Terminal: 20% O Middle 70% M Residual 10% O
Length = 375
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 246 IWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDG 302
+ EH ID+ L+ + V C N GD+ SD +A GS+GL+ S+ + G
Sbjct: 228 VELEHIYIDNATMQLLRRPNEFDVMLCSNLFGDIVSDEIAMLTGSMGLLASISMNSQG 285
>pdb|3VMK|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Benthica
Db21 Mt-2
pdb|3VMK|B Chain B, 3-Isopropylmalate Dehydrogenase From Shewanella Benthica
Db21 Mt-2
Length = 375
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 246 IWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSV 296
+ EH ID+ L+ + V C N GD+ SD +A GS+GL+ S+
Sbjct: 228 VELEHIYIDNATMQLLRRPNEFDVMLCSNLFGDIVSDEIAMLTGSMGLLASI 279
>pdb|3U1H|A Chain A, Crystal Structure Of Ipmdh From The Last Common Ancestor
Of Bacillus
pdb|3U1H|B Chain B, Crystal Structure Of Ipmdh From The Last Common Ancestor
Of Bacillus
Length = 390
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 59/139 (42%), Gaps = 10/139 (7%)
Query: 176 GEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEA 235
GE ++ T E I + A +K + K +L+ +++EV E
Sbjct: 173 GEEAAVDTLLYTREEIERIIRKAFELALTRKKKVTSVDKANVLES-----SRLWREVAEE 227
Query: 236 NWKSKFEAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMT 294
K E + EH L+D+ +++ + V +N GD+ SD + GSLG++
Sbjct: 228 VAK---EYPDVELEHMLVDNAAMQLIRNPRQFDVIVTENMFGDILSDEASMITGSLGMLP 284
Query: 295 SVLVCPDGKTIEAEAAHGT 313
S + DG + E HG+
Sbjct: 285 SASLSTDGLGL-YEPVHGS 302
>pdb|3TY3|A Chain A, Crystal Structure Of Homoisocitrate Dehydrogenase From
Schizosaccharomyces Pombe Bound To Glycyl-Glycyl-Glycine
pdb|3TY3|B Chain B, Crystal Structure Of Homoisocitrate Dehydrogenase From
Schizosaccharomyces Pombe Bound To Glycyl-Glycyl-Glycine
pdb|3TY4|A Chain A, Crystal Structure Of Homoisocitrate Dehydrogenase From
Schizosaccharomyces Pombe
pdb|3TY4|B Chain B, Crystal Structure Of Homoisocitrate Dehydrogenase From
Schizosaccharomyces Pombe
Length = 366
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 85/215 (39%), Gaps = 34/215 (15%)
Query: 123 IPGWTKPICIGRHAFG--DQYRATDTVIQGPGK-LKLVFVPEGKD---EKTELEVYNFTG 176
+ G++ PI R G R ++ GK + LV V E + K E V N G
Sbjct: 90 VAGYSSPIVALRKKMGLYANVRPVKSLDGAKGKPVDLVIVRENTECLYVKEERMVQNTPG 149
Query: 177 E-----------------GGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILK 219
+ G +A + + + IR S++ KK + + K+ ++
Sbjct: 150 KRVAEAIRRISEEASTKIGKMAFEIAKSRQKIRESGTYSIH----KKPLVTIIHKSNVMS 205
Query: 220 KYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDV 278
DG F++ + + A I + +++D MV + + V N GD+
Sbjct: 206 VTDGLFRESCRHAQSLDPSY----ASINVDEQIVDSMVYRLFREPECFDVVVAPNLYGDI 261
Query: 279 QSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGT 313
SD A GSLGL+ S V + + +E HG+
Sbjct: 262 LSDGAASLIGSLGLVPSANVGDN--FVMSEPVHGS 294
>pdb|3VKZ|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At Atmospheric Pressure
pdb|3VL2|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 160 Mpa
pdb|3VL3|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 340 Mpa
pdb|3VL4|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 410 Mpa
pdb|3VL6|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 580 Mpa
pdb|3VL7|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 650 Mpa
pdb|3VMJ|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1
Length = 375
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 246 IWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSV 296
+ EH ID+ L+ + V C N GD+ SD +A GS+GL++S
Sbjct: 228 VELEHIYIDNATMQLLRRPDEFDVMLCSNLFGDILSDEIAMLTGSMGLLSSA 279
>pdb|3TKN|A Chain A, Structure Of The Nup82-Nup159-Nup98 Heterotrimer
pdb|3TKN|D Chain D, Structure Of The Nup82-Nup159-Nup98 Heterotrimer
pdb|3TKN|G Chain G, Structure Of The Nup82-Nup159-Nup98 Heterotrimer
Length = 452
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 54/131 (41%), Gaps = 20/131 (15%)
Query: 128 KPICIGR--HAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNF-TGEGGVALSM 184
KPI + + ++FG R D L F +G L +Y T EGG +
Sbjct: 162 KPIVLNKPNNSFGLDARVNDIT-------DLEFSKDG------LTLYCLNTTEGGDIFAF 208
Query: 185 YNTDESIRAFAEASMNTAYQKKWPLYLS---TKNTILKKYDGRFKDIFQEVYEANWKSKF 241
Y S+ E +N K +Y S T + I+K+ + +++E NW S+F
Sbjct: 209 YPFLPSVLLLNEKDLNLILNKSLVMYESLDSTTDVIVKRNVIKQLQFVSKLHE-NWNSRF 267
Query: 242 EAAGIWYEHRL 252
I E+RL
Sbjct: 268 GKVDIQKEYRL 278
>pdb|1V5B|A Chain A, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|B Chain B, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|C Chain C, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|D Chain D, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|E Chain E, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|F Chain F, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|G Chain G, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|H Chain H, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
Length = 366
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 53/127 (41%), Gaps = 9/127 (7%)
Query: 176 GEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEA 235
GE V ++ T E I E + A ++ L K +L+ +++E+ E
Sbjct: 152 GENEVVDTLAYTREEIERIIEKAFQLAQIRRKKLASVDKANVLES-----SRMWREIAEE 206
Query: 236 NWKSKFEAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMT 294
K + + H L+D + + G + V +N GD+ SD + GSLG++
Sbjct: 207 TAKKYPD---VELSHMLVDSTAMQLIANPGQFDVIVTENMFGDILSDLASVITGSLGMLP 263
Query: 295 SVLVCPD 301
S + D
Sbjct: 264 SASLRSD 270
>pdb|1WAL|A Chain A, 3-Isopropylmalate Dehydrogenase (Ipmdh) Mutant (M219a)from
Thermus Thermophilus
Length = 345
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Query: 237 WKSKFEAAGIWY-----EHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSL 290
W+ E G Y EH+ +D + ++S + V N GD+ SD + GSL
Sbjct: 195 WRKTVEEVGRGYPDVALEHQYVDAAAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSL 254
Query: 291 GLMTS 295
GL+ S
Sbjct: 255 GLLPS 259
>pdb|1WPW|A Chain A, Crystal Structure Of Ipmdh From Sulfolobus Tokodaii
pdb|1WPW|B Chain B, Crystal Structure Of Ipmdh From Sulfolobus Tokodaii
Length = 336
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 10/103 (9%)
Query: 194 FAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLI 253
A+ +N A +++ + K +++ DG +F E + K K E Y +
Sbjct: 149 IAKVGLNFALRRRKKVTCVHKANVMRITDG----LFAEACRSVLKGKVE-----YSEMYV 199
Query: 254 DDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTS 295
D A +++ + V +N GD+ SD +Q GSLG+ S
Sbjct: 200 DAAAANLVRNPQMFDVIVTENVYGDILSDEASQIAGSLGIAPS 242
>pdb|3PBP|A Chain A, Structure Of The Yeast Heterotrimeric Nup82-Nup159-Nup116
Nucleoporin Complex
pdb|3PBP|D Chain D, Structure Of The Yeast Heterotrimeric Nup82-Nup159-Nup116
Nucleoporin Complex
pdb|3PBP|G Chain G, Structure Of The Yeast Heterotrimeric Nup82-Nup159-Nup116
Nucleoporin Complex
pdb|3PBP|J Chain J, Structure Of The Yeast Heterotrimeric Nup82-Nup159-Nup116
Nucleoporin Complex
Length = 452
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 53/131 (40%), Gaps = 20/131 (15%)
Query: 128 KPICIGR--HAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNF-TGEGGVALSM 184
KPI + + ++FG R D L F +G L +Y T EGG +
Sbjct: 162 KPIVLNKPNNSFGLDARVNDIT-------DLEFSKDG------LTLYCLNTTEGGDIFAF 208
Query: 185 YNTDESIRAFAEASMNTAYQKKWPLYLS---TKNTILKKYDGRFKDIFQEVYEANWKSKF 241
Y S+ E +N K Y S T + I+K+ + +++E NW S+F
Sbjct: 209 YPFLPSVLLLNEKDLNLILNKSLVXYESLDSTTDVIVKRNVIKQLQFVSKLHE-NWNSRF 267
Query: 242 EAAGIWYEHRL 252
I E+RL
Sbjct: 268 GKVDIQKEYRL 278
>pdb|3IF0|X Chain X, Crystal Structure Of The Nanoarchaeum Equitans Trna
Splicing Endonuclease Structural Subunit
pdb|3IEY|B Chain B, Crystal Structure Of The Functional Nanoarchaeum Equitans
Trna Splicing Endonuclease
Length = 153
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 203 YQKKWPLYLSTKNTILKKYDGRFKDIFQEVYE 234
Y+ W +Y + K+ IL+ Y RF F E+YE
Sbjct: 57 YKNFWEIYYTVKDLILRGYRVRFDGFFIELYE 88
>pdb|3DMS|A Chain A, 1.65a Crystal Structure Of Isocitrate Dehydrogenase From
Burkholderia Pseudomallei
Length = 427
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 78/368 (21%), Positives = 137/368 (37%), Gaps = 72/368 (19%)
Query: 1 MAFQKIKVANPIVEMDGDEMT--RVFWKSIKDKLIFPFLELDIKYFDLG---LPNRDATD 55
M +Q IKV GD++T + F ++ D+ I P++E D FD+ + DA
Sbjct: 9 MPYQHIKVPE-----GGDKITVNKDFSLNVSDQPIIPYIEGDGTGFDITPVMIKVVDAAV 63
Query: 56 DK----------------------------VTVESAEATLKYNVAIKCATITPDEARVKE 87
+K + E+ + +Y V+IK TP ++
Sbjct: 64 EKAYGGKKKIHWMEIYAGEKATKVYGPDVWLPEETLQVLKEYVVSIKGPLTTPVGGGIR- 122
Query: 88 FVLKQMWKSPNGTIRNILNGTVFREPI-ICKNVPRLI--PGWTKPICIGRHAFGDQYRAT 144
S N +R L+ V PI K VP + P T + I R D Y
Sbjct: 123 --------SLNVALRQELDLYVCLRPIQYFKGVPSPVREPEKTN-MVIFRENSEDIYAGI 173
Query: 145 DTVIQGPGKLKLV-FVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAY 203
+ + K++ F+ E+ ++ F G+ + + + + R +A
Sbjct: 174 EWAAESEQAKKVIKFL----QEEMGVKKIRFPQTSGIGIKPVSKEGTERLVRKAIQYAID 229
Query: 204 QKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHR--------LIDD 255
+ + L K I+K +G F+D + + + ++ G W + + ++ D
Sbjct: 230 NDRKSVTLVHKGNIMKFTEGAFRDAGYALAQKEFGAELIDGGPWMKFKNPKTGNEIVVKD 289
Query: 256 MVAYA------LKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEA 309
+A A L+ V A N +GD SD LA G +G+ + EA
Sbjct: 290 SIADAFLQQILLRPAEYDVIATLNLNGDYISDALAAQVGGIGIAPGANLSDSVAMF--EA 347
Query: 310 AHGTVTRH 317
HGT ++
Sbjct: 348 THGTAPKY 355
>pdb|4AVG|A Chain A, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With Diketo Compound 2
pdb|4AVG|B Chain B, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With Diketo Compound 2
pdb|4AVG|C Chain C, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With Diketo Compound 2
pdb|4AVG|D Chain D, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With Diketo Compound 2
pdb|4AVL|A Chain A, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With Dtmp
pdb|4AVL|B Chain B, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With Dtmp
pdb|4AVL|C Chain C, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With Dtmp
pdb|4AVL|D Chain D, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With Dtmp
pdb|4AVQ|A Chain A, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease
pdb|4AVQ|B Chain B, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease
pdb|4AVQ|C Chain C, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease
pdb|4AVQ|D Chain D, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease
pdb|4AWF|A Chain A, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With 2 4-Dioxo-4-Phenylbutanoic
Acid Dpba
pdb|4AWF|B Chain B, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With 2 4-Dioxo-4-Phenylbutanoic
Acid Dpba
pdb|4AWF|C Chain C, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With 2 4-Dioxo-4-Phenylbutanoic
Acid Dpba
pdb|4AWF|D Chain D, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With 2 4-Dioxo-4-Phenylbutanoic
Acid Dpba
pdb|4AWG|A Chain A, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With Diketo Compound 3
pdb|4AWG|B Chain B, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With Diketo Compound 3
pdb|4AWG|C Chain C, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With Diketo Compound 3
pdb|4AWG|D Chain D, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With Diketo Compound 3
pdb|4AWH|A Chain A, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With Rump
pdb|4AWH|B Chain B, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With Rump
pdb|4AWH|C Chain C, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With Rump
pdb|4AWH|D Chain D, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With Rump
Length = 204
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 163 KDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQK 205
K EKT + +++FTGE + Y DE RA + + T Q+
Sbjct: 145 KSEKTHIHIFSFTGEEMATKADYTLDEESRARIKTRLFTIRQE 187
>pdb|4AWK|A Chain A, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With Diketo Compound 1
Length = 183
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 163 KDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQK 205
K EKT + +++FTGE + Y DE RA + + T Q+
Sbjct: 124 KSEKTHIHIFSFTGEEMATKADYTLDEESRARIKTRLFTIRQE 166
>pdb|4AWM|A Chain A, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With (-)-Epigallocatechin
Gallate From Green Tea
Length = 192
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 163 KDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQK 205
K EKT + +++FTGE + Y DE RA + + T Q+
Sbjct: 133 KSEKTHIHIFSFTGEEMATKADYTLDEESRARIKTRLFTIRQE 175
>pdb|2FIC|A Chain A, The Crystal Structure Of The Bar Domain From Human
Bin1AMPHIPHYSIN II And Its Implications For Molecular
Recognition
pdb|2FIC|B Chain B, The Crystal Structure Of The Bar Domain From Human
Bin1AMPHIPHYSIN II And Its Implications For Molecular
Recognition
Length = 251
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 58/151 (38%), Gaps = 40/151 (26%)
Query: 119 VPR---LIPGWTKPICIGRHAFGDQ---YRATDTVIQGPGKLKLVFVPEGKDEKTELEVY 172
VPR + +K + G+ A Q RA + V+Q GK E KDE+ E V
Sbjct: 5 VPRGSHMAEMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGK-----ADETKDEQFEQCVQ 59
Query: 173 NFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEV 232
NF + + T QK YL++ + + + + QEV
Sbjct: 60 NFN-------------------KQLTEGTRLQKDLRTYLASVKA-MHEASKKLNECLQEV 99
Query: 233 YEANWKSKFEAAGI-------W--YEHRLID 254
YE +W + EA I W Y +L+D
Sbjct: 100 YEPDWPGRDEANKIAENNDLLWMDYHQKLVD 130
>pdb|3HW3|A Chain A, The Crystal Structure Of Avian Influenza Virus Pa_n In
Complex With Ump
pdb|3HW3|B Chain B, The Crystal Structure Of Avian Influenza Virus Pa_n In
Complex With Ump
pdb|3HW3|C Chain C, The Crystal Structure Of Avian Influenza Virus Pa_n In
Complex With Ump
pdb|3HW3|D Chain D, The Crystal Structure Of Avian Influenza Virus Pa_n In
Complex With Ump
pdb|3HW5|A Chain A, Crystal Structure Of Avian Influenza Virus Pa_n In Complex
With Amp
pdb|3HW5|B Chain B, Crystal Structure Of Avian Influenza Virus Pa_n In Complex
With Amp
pdb|3HW5|C Chain C, Crystal Structure Of Avian Influenza Virus Pa_n In Complex
With Amp
pdb|3HW5|D Chain D, Crystal Structure Of Avian Influenza Virus Pa_n In Complex
With Amp
pdb|3HW6|A Chain A, Crystal Structure Of Avian Influenza Virus Pa_n In Complex
With Mn
pdb|3HW6|B Chain B, Crystal Structure Of Avian Influenza Virus Pa_n In Complex
With Mn
pdb|3HW6|C Chain C, Crystal Structure Of Avian Influenza Virus Pa_n In Complex
With Mn
pdb|3HW6|D Chain D, Crystal Structure Of Avian Influenza Virus Pa_n In Complex
With Mn
pdb|3HW4|A Chain A, Crystal Structure Of Avian Influenza A Virus In Complex
With Tmp
pdb|3HW4|B Chain B, Crystal Structure Of Avian Influenza A Virus In Complex
With Tmp
pdb|3HW4|C Chain C, Crystal Structure Of Avian Influenza A Virus In Complex
With Tmp
pdb|3HW4|D Chain D, Crystal Structure Of Avian Influenza A Virus In Complex
With Tmp
Length = 261
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 163 KDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQK 205
K EKT + +++FTGE + Y DE RA + + T Q+
Sbjct: 144 KSEKTHIHIFSFTGEEMATKADYTLDEESRARIKTRLFTIRQE 186
>pdb|3EBJ|A Chain A, Crystal Structure Of An Avian Influenza Virus Protein
pdb|3EBJ|B Chain B, Crystal Structure Of An Avian Influenza Virus Protein
pdb|3EBJ|C Chain C, Crystal Structure Of An Avian Influenza Virus Protein
pdb|3EBJ|D Chain D, Crystal Structure Of An Avian Influenza Virus Protein
Length = 259
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 163 KDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQK 205
K EKT + +++FTGE + Y DE RA + + T Q+
Sbjct: 142 KSEKTHIHIFSFTGEEMATKADYTLDEESRARIKTRLFTIRQE 184
>pdb|2AYQ|A Chain A, 3-Isopropylmalate Dehydrogenase From The Moderate
Facultative Thermophile, Bacillus Coagulans
pdb|2AYQ|B Chain B, 3-Isopropylmalate Dehydrogenase From The Moderate
Facultative Thermophile, Bacillus Coagulans
Length = 366
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 53/127 (41%), Gaps = 9/127 (7%)
Query: 176 GEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEA 235
GE V ++ T E I E + A ++ L K +L+ +++E+ E
Sbjct: 152 GENEVVDTLAYTREEIERIIEKAFQLAQIRRKKLASVDKANVLES-----SRMWREIAEE 206
Query: 236 NWKSKFEAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMT 294
K + + H L+D + + G + V +N GD+ SD + GSLG++
Sbjct: 207 TAKKYPD---VELSHMLVDSTSMQLIANPGQFDVIVTENMFGDILSDEASVITGSLGMLP 263
Query: 295 SVLVCPD 301
S + D
Sbjct: 264 SASLRSD 270
>pdb|1V53|A Chain A, The Crystal Structure Of 3-Isopropylmalate Dehydrogenase
From Bacillus Coagulans
pdb|1V53|B Chain B, The Crystal Structure Of 3-Isopropylmalate Dehydrogenase
From Bacillus Coagulans
Length = 366
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 53/127 (41%), Gaps = 9/127 (7%)
Query: 176 GEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEA 235
GE V ++ T E I E + A ++ L K +L+ +++E+ E
Sbjct: 152 GENEVVDTLAYTREEIERIIEKAFQLAQIRRKKLASVDKANVLES-----SRMWREIAEE 206
Query: 236 NWKSKFEAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMT 294
K + + H L+D + + G + V +N GD+ SD + GSLG++
Sbjct: 207 TAKKYPD---VELSHMLVDSTSMQLIANPGQFDVIVTENMFGDILSDEASVITGSLGMLP 263
Query: 295 SVLVCPD 301
S + D
Sbjct: 264 SASLRSD 270
>pdb|3IS1|X Chain X, Crystal Structure Of Functional Region Of Uafa From
Staphylococcus Saprophyticus In C2 Form At 2.45 Angstrom
Resolution
Length = 446
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Query: 265 GGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYR 319
GGYVW KN DG VQ+D A G +T L+ P G I +T HY
Sbjct: 326 GGYVWFDKNNDG-VQNDSNAAAAG----ITVNLLDPTG--IRLATTTTDITGHYN 373
>pdb|3OR1|B Chain B, Crystal Structure Of Dissimilatory Sulfite Reductase I
(Dsri)
pdb|3OR1|E Chain E, Crystal Structure Of Dissimilatory Sulfite Reductase I
(Dsri)
Length = 386
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 206 KWPLYLSTKNTILKKY--DGR-FKDIFQEVYEANWKSKFEAAGIWYEHRLIDD 255
+WP I++ Y D R ++ I ++ W++ +E G+ + H IDD
Sbjct: 312 RWPTMAKIVKKIVEVYAEDARKYERIGDWIHRIGWETFYEKTGLEFSHHCIDD 364
>pdb|3IRP|X Chain X, Crystal Structure Of Functional Region Of Uafa From
Staphylococcus Saprophyticus At 1.50 Angstrom Resolution
pdb|3IRZ|A Chain A, Crystal Structure Of Functional Region Of Uafa From
Staphylococcus Saprophyticus In P212121 Form
pdb|3IS0|X Chain X, Crystal Structure Of Functional Region Of Uafa From
Staphylococcus Saprophyticus In The Presence Of
Cholesterol
Length = 429
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Query: 265 GGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYR 319
GGYVW KN DG VQ+D A G +T L+ P G I +T HY
Sbjct: 309 GGYVWFDKNNDG-VQNDSNAAAAG----ITVNLLDPTG--IRLATTTTDITGHYN 356
>pdb|3OR2|B Chain B, Crystal Structure Of Dissimilatory Sulfite Reductase Ii
(Dsrii)
pdb|3OR2|E Chain E, Crystal Structure Of Dissimilatory Sulfite Reductase Ii
(Dsrii)
Length = 385
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 206 KWPLYLSTKNTILKKY--DGR-FKDIFQEVYEANWKSKFEAAGIWYEHRLIDDM 256
+WP I++ Y D R ++ I ++ W++ +E G+ + H IDD
Sbjct: 311 RWPTMAKIVKKIVEVYAEDARKYERIGDWIHRIGWETFYEKTGLEFSHHCIDDF 364
>pdb|1CNZ|A Chain A, 3-Isopropylmalate Dehydrogenase (Ipmdh) From Salmonella
Typhimurium
pdb|1CNZ|B Chain B, 3-Isopropylmalate Dehydrogenase (Ipmdh) From Salmonella
Typhimurium
Length = 363
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 250 HRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDG 302
H ID+ +K + V C N GD+ SD A GS+G++ S + G
Sbjct: 223 HMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQG 276
>pdb|1CM7|A Chain A, 3-Isopropylmalate Dehydrogenase From Escherichia Coli
pdb|1CM7|B Chain B, 3-Isopropylmalate Dehydrogenase From Escherichia Coli
Length = 363
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 250 HRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSV 296
H ID+ +K + V C N GD+ SD A GS+G++ S
Sbjct: 223 HMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGMLPSA 270
>pdb|4E5E|A Chain A, Crystal Structure Of Avian Influenza Virus Pan Apo
pdb|4E5E|B Chain B, Crystal Structure Of Avian Influenza Virus Pan Apo
pdb|4E5E|C Chain C, Crystal Structure Of Avian Influenza Virus Pan Apo
pdb|4E5E|D Chain D, Crystal Structure Of Avian Influenza Virus Pan Apo
pdb|4E5F|A Chain A, Crystal Structure Of Avian Influenza Virus Pan Bound To
Compound 1
pdb|4E5F|B Chain B, Crystal Structure Of Avian Influenza Virus Pan Bound To
Compound 1
pdb|4E5F|C Chain C, Crystal Structure Of Avian Influenza Virus Pan Bound To
Compound 1
pdb|4E5F|D Chain D, Crystal Structure Of Avian Influenza Virus Pan Bound To
Compound 1
pdb|4E5G|A Chain A, Crystal Structure Of Avian Influenza Virus Pan Bound To
Compound 2
pdb|4E5G|B Chain B, Crystal Structure Of Avian Influenza Virus Pan Bound To
Compound 2
pdb|4E5G|C Chain C, Crystal Structure Of Avian Influenza Virus Pan Bound To
Compound 2
pdb|4E5G|D Chain D, Crystal Structure Of Avian Influenza Virus Pan Bound To
Compound 2
pdb|4E5H|A Chain A, Crystal Structure Of Avian Influenza Virus Pan Bound To
Compound 3
pdb|4E5H|B Chain B, Crystal Structure Of Avian Influenza Virus Pan Bound To
Compound 3
pdb|4E5H|C Chain C, Crystal Structure Of Avian Influenza Virus Pan Bound To
Compound 3
pdb|4E5H|D Chain D, Crystal Structure Of Avian Influenza Virus Pan Bound To
Compound 3
pdb|4E5I|A Chain A, Crystal Structure Of Avian Influenza Virus Pan Bound To
Compound 4
pdb|4E5I|B Chain B, Crystal Structure Of Avian Influenza Virus Pan Bound To
Compound 4
pdb|4E5I|C Chain C, Crystal Structure Of Avian Influenza Virus Pan Bound To
Compound 4
pdb|4E5I|D Chain D, Crystal Structure Of Avian Influenza Virus Pan Bound To
Compound 4
pdb|4E5J|A Chain A, Crystal Structure Of Avian Influenza Virus Pan Bound To
Compound 5
pdb|4E5J|B Chain B, Crystal Structure Of Avian Influenza Virus Pan Bound To
Compound 5
pdb|4E5J|C Chain C, Crystal Structure Of Avian Influenza Virus Pan Bound To
Compound 5
pdb|4E5J|D Chain D, Crystal Structure Of Avian Influenza Virus Pan Bound To
Compound 5
pdb|4E5L|A Chain A, Crystal Structure Of Avian Influenza Virus Pan Bound To
Compound 6
pdb|4E5L|B Chain B, Crystal Structure Of Avian Influenza Virus Pan Bound To
Compound 6
pdb|4E5L|C Chain C, Crystal Structure Of Avian Influenza Virus Pan Bound To
Compound 6
pdb|4E5L|D Chain D, Crystal Structure Of Avian Influenza Virus Pan Bound To
Compound 6
Length = 187
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 163 KDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQK 205
K E+T + +++FTGE + Y DE RA + + T Q+
Sbjct: 120 KSEETHIHIFSFTGEEMATKADYTLDEESRARIKTRLFTIRQE 162
>pdb|2V4J|B Chain B, The Crystal Structure Of Desulfovibrio Vulgaris
Dissimilatory Sulfite Reductase Bound To Dsrc Provides
Novel Insights Into The Mechanism Of Sulfate Respiration
pdb|2V4J|E Chain E, The Crystal Structure Of Desulfovibrio Vulgaris
Dissimilatory Sulfite Reductase Bound To Dsrc Provides
Novel Insights Into The Mechanism Of Sulfate Respiration
Length = 381
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 206 KWPLYLSTKNTILKKYDG---RFKDIFQEVYEANWKSKFEAAGIWYEHRLIDD 255
+WP T I++ Y +++ + + W+ F G+ + H LIDD
Sbjct: 312 RWPSLTKTIKHIIEVYSANAYKYERLGEWAERIGWERFFSLTGLEFSHHLIDD 364
>pdb|4IWH|A Chain A, Crystal Structure Of A 3-isopropylmalate Dehydrogenase
From Burkholderia Pseudomallei
pdb|4IWH|B Chain B, Crystal Structure Of A 3-isopropylmalate Dehydrogenase
From Burkholderia Pseudomallei
Length = 363
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 61/141 (43%), Gaps = 10/141 (7%)
Query: 174 FTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVY 233
F GE +M ++ +R A + A ++ L K+ +L+ ++D+ +V
Sbjct: 158 FAGEREGFDTMRYSEPEVRRIAHVAFQAAQKRAKKLLSVDKSNVLETSQ-FWRDVMIDVS 216
Query: 234 EANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGL 292
+ E A + H +D+ K+ + V N GD+ SD + GS+G+
Sbjct: 217 K-------EYADVELSHMYVDNAAMQLAKAPKQFDVIVTGNMFGDILSDEASMLTGSIGM 269
Query: 293 MTSVLVCPDGKTIEAEAAHGT 313
+ S + + K + E +HG+
Sbjct: 270 LPSASLDKNNKGLY-EPSHGS 289
>pdb|1DI1|A Chain A, Crystal Structure Of Aristolochene Synthase From
Penicillium Roqueforti
pdb|1DI1|B Chain B, Crystal Structure Of Aristolochene Synthase From
Penicillium Roqueforti
pdb|1DGP|A Chain A, Aristolochene Synthase Farnesol Complex
pdb|1DGP|B Chain B, Aristolochene Synthase Farnesol Complex
Length = 300
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 14/86 (16%)
Query: 25 WKSIKDKLIFPFLELDIKYFDLGLPNR--------------DATDDKVTVESAEATLKYN 70
+K+++ L F E+ YF L L +R D + ++ EA
Sbjct: 35 FKAVRTFLDAKFSEVTCLYFPLALDDRIHFACRLLTVLFLIDDVLEHMSFADGEAYNNRL 94
Query: 71 VAIKCATITPDEARVKEFVLKQMWKS 96
+ I + PD + +EF+L +W+S
Sbjct: 95 IPISRGDVLPDRTKPEEFILYDLWES 120
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,969,136
Number of Sequences: 62578
Number of extensions: 479965
Number of successful extensions: 1090
Number of sequences better than 100.0: 72
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 1044
Number of HSP's gapped (non-prelim): 84
length of query: 335
length of database: 14,973,337
effective HSP length: 99
effective length of query: 236
effective length of database: 8,778,115
effective search space: 2071635140
effective search space used: 2071635140
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)