Query 019837
Match_columns 335
No_of_seqs 128 out of 1171
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 04:56:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019837.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019837hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0473 LeuB Isocitrate/isopro 100.0 2E-100 5E-105 729.9 24.3 283 8-335 2-291 (348)
2 PRK08299 isocitrate dehydrogen 100.0 5.5E-97 1E-101 725.8 30.1 331 3-335 1-331 (402)
3 PLN03065 isocitrate dehydrogen 100.0 5.1E-95 1.1E-99 721.1 30.7 332 3-335 71-402 (483)
4 PRK08997 isocitrate dehydrogen 100.0 5.8E-95 1.2E-99 700.1 28.5 277 8-335 1-280 (334)
5 PTZ00435 isocitrate dehydrogen 100.0 3.5E-94 7.6E-99 707.2 29.6 333 2-335 2-334 (413)
6 TIGR00127 nadp_idh_euk isocitr 100.0 8.5E-94 1.8E-98 703.8 29.4 332 4-335 1-332 (409)
7 PLN00118 isocitrate dehydrogen 100.0 1.1E-93 2.4E-98 697.9 27.7 274 10-335 42-318 (372)
8 PRK03437 3-isopropylmalate deh 100.0 2.3E-93 5E-98 691.8 27.3 282 10-335 5-296 (344)
9 PRK14025 multifunctional 3-iso 100.0 2.5E-93 5.4E-98 687.7 27.3 269 10-335 2-277 (330)
10 PRK08194 tartrate dehydrogenas 100.0 3.3E-93 7.2E-98 692.6 27.1 282 10-335 4-296 (352)
11 PLN02329 3-isopropylmalate deh 100.0 2.6E-93 5.6E-98 701.2 25.6 287 7-335 44-343 (409)
12 TIGR02089 TTC tartrate dehydro 100.0 1.3E-92 2.8E-97 689.0 26.9 283 10-335 4-299 (352)
13 TIGR00169 leuB 3-isopropylmala 100.0 9.7E-92 2.1E-96 682.1 27.5 282 11-335 1-295 (349)
14 PRK06451 isocitrate dehydrogen 100.0 1.1E-91 2.3E-96 692.3 27.6 296 12-335 26-350 (412)
15 PRK09222 isocitrate dehydrogen 100.0 1E-91 2.2E-96 700.9 27.6 275 8-335 3-282 (482)
16 PRK00772 3-isopropylmalate deh 100.0 3.8E-91 8.3E-96 679.5 26.4 285 8-335 1-298 (358)
17 TIGR02924 ICDH_alpha isocitrat 100.0 3.8E-91 8.2E-96 694.6 26.7 272 11-335 2-278 (473)
18 PRK07006 isocitrate dehydrogen 100.0 1.2E-90 2.6E-95 685.5 28.2 299 12-335 22-350 (409)
19 PLN00103 isocitrate dehydrogen 100.0 1.7E-90 3.8E-95 681.3 28.3 308 1-335 1-335 (410)
20 TIGR02088 LEU3_arch isopropylm 100.0 1.6E-90 3.4E-95 667.4 26.8 269 12-335 1-272 (322)
21 PLN00123 isocitrate dehydrogen 100.0 2.4E-90 5.2E-95 671.4 27.6 268 10-335 31-305 (360)
22 TIGR00175 mito_nad_idh isocitr 100.0 8.1E-90 1.8E-94 665.9 27.5 272 10-335 4-279 (333)
23 TIGR00183 prok_nadp_idh isocit 100.0 7.9E-90 1.7E-94 682.1 27.8 299 12-335 29-357 (416)
24 PRK07362 isocitrate dehydrogen 100.0 1.9E-88 4.1E-93 669.0 25.6 300 12-335 31-414 (474)
25 KOG0785 Isocitrate dehydrogena 100.0 5.2E-89 1.1E-93 637.8 18.0 272 10-335 36-311 (365)
26 PF00180 Iso_dh: Isocitrate/is 100.0 3E-87 6.5E-92 653.4 17.8 278 11-335 1-294 (348)
27 PLN00096 isocitrate dehydrogen 100.0 5.8E-83 1.2E-87 620.7 26.1 317 13-335 2-330 (393)
28 COG0538 Icd Isocitrate dehydro 100.0 2.7E-78 5.9E-83 580.1 23.9 304 11-335 20-346 (407)
29 KOG0784 Isocitrate dehydrogena 100.0 6.5E-72 1.4E-76 528.6 18.8 271 9-335 42-318 (375)
30 KOG0786 3-isopropylmalate dehy 100.0 6.4E-71 1.4E-75 505.2 14.1 276 9-335 4-304 (363)
31 KOG1526 NADP-dependent isocitr 100.0 2E-62 4.3E-67 458.3 20.0 334 1-335 10-343 (422)
32 TIGR00127 nadp_idh_euk isocitr 90.9 0.13 2.7E-06 52.1 1.9 21 127-147 140-161 (409)
33 PF04166 PdxA: Pyridoxal phosp 86.2 0.23 5.1E-06 48.2 0.1 133 184-335 150-291 (298)
34 COG1995 PdxA Pyridoxal phospha 83.0 0.39 8.4E-06 47.1 0.1 48 281-335 268-316 (332)
35 PRK00232 pdxA 4-hydroxythreoni 82.5 0.4 8.6E-06 47.3 -0.1 131 184-335 177-317 (332)
36 PRK03371 pdxA 4-hydroxythreoni 82.3 0.41 9E-06 47.1 0.0 131 184-335 176-316 (326)
37 PRK03946 pdxA 4-hydroxythreoni 81.7 0.44 9.5E-06 46.5 -0.1 130 184-335 157-294 (307)
38 PRK01909 pdxA 4-hydroxythreoni 81.2 0.47 1E-05 46.8 -0.1 131 184-335 172-313 (329)
39 PRK03743 pdxA 4-hydroxythreoni 80.5 0.51 1.1E-05 46.6 -0.1 131 184-335 177-317 (332)
40 PRK02746 pdxA 4-hydroxythreoni 80.4 0.52 1.1E-05 46.7 -0.1 135 184-335 179-330 (345)
41 TIGR00557 pdxA 4-hydroxythreon 79.7 0.57 1.2E-05 46.0 -0.0 131 184-335 169-310 (320)
42 PRK05312 pdxA 4-hydroxythreoni 79.6 0.57 1.2E-05 46.3 -0.1 131 184-335 181-322 (336)
43 PRK02746 pdxA 4-hydroxythreoni 61.8 7.8 0.00017 38.5 3.3 29 1-29 1-31 (345)
44 PTZ00435 isocitrate dehydrogen 57.2 6 0.00013 40.2 1.7 18 127-144 143-161 (413)
45 PF03971 IDH: Monomeric isocit 54.1 78 0.0017 33.9 9.1 124 184-320 455-588 (735)
46 PRK03371 pdxA 4-hydroxythreoni 54.0 11 0.00023 37.3 2.7 22 8-29 1-24 (326)
47 PRK05312 pdxA 4-hydroxythreoni 43.3 20 0.00042 35.6 2.8 22 8-29 2-25 (336)
48 COG0655 WrbA Multimeric flavod 41.5 1.5E+02 0.0032 26.6 8.1 83 11-107 5-100 (207)
49 PRK00232 pdxA 4-hydroxythreoni 40.3 24 0.00052 34.9 2.9 22 8-29 3-26 (332)
50 TIGR00178 monomer_idh isocitra 39.3 1.8E+02 0.0038 31.4 8.9 120 188-320 463-592 (741)
51 PRK03743 pdxA 4-hydroxythreoni 38.8 25 0.00055 34.8 2.7 20 10-29 4-25 (332)
52 PF00582 Usp: Universal stress 35.3 41 0.00089 26.3 3.1 27 187-213 11-37 (140)
53 COG1618 Predicted nucleotide k 32.6 3.3E+02 0.0071 24.7 8.4 96 185-287 80-176 (179)
54 COG1222 RPT1 ATP-dependent 26S 30.9 1E+02 0.0022 31.2 5.5 64 192-275 230-300 (406)
55 COG1995 PdxA Pyridoxal phospha 30.9 38 0.00082 33.5 2.5 17 10-26 4-22 (332)
56 PRK03946 pdxA 4-hydroxythreoni 30.9 31 0.00068 33.8 1.9 19 10-28 2-22 (307)
57 cd01988 Na_H_Antiporter_C The 30.7 82 0.0018 25.0 4.2 28 189-216 10-37 (132)
58 KOG1014 17 beta-hydroxysteroid 30.1 84 0.0018 30.9 4.7 44 196-254 64-107 (312)
59 KOG1671 Ubiquinol cytochrome c 29.8 38 0.00081 31.3 2.1 47 260-324 140-188 (210)
60 PRK15005 universal stress prot 29.8 72 0.0016 26.1 3.8 23 191-213 17-39 (144)
61 PRK01909 pdxA 4-hydroxythreoni 26.1 53 0.0012 32.5 2.6 20 10-29 6-27 (329)
62 PRK09982 universal stress prot 25.8 70 0.0015 26.7 3.0 25 190-214 15-39 (142)
63 cd01989 STK_N The N-terminal d 23.9 69 0.0015 26.3 2.6 26 189-214 10-35 (146)
64 COG0723 QcrA Rieske Fe-S prote 23.0 63 0.0014 28.5 2.3 20 305-324 125-144 (177)
65 TIGR00557 pdxA 4-hydroxythreon 22.9 66 0.0014 31.7 2.6 19 11-29 1-21 (320)
66 PLN03065 isocitrate dehydrogen 22.3 55 0.0012 34.1 2.0 12 128-139 212-233 (483)
67 cd00982 gltB_C gltb_C. This do 22.1 91 0.002 29.7 3.3 81 251-331 4-100 (251)
68 cd00293 USP_Like Usp: Universa 21.7 1.3E+02 0.0028 23.1 3.7 26 188-213 9-34 (130)
69 cd06063 H2MP_Cyano-H2up This g 20.3 1.8E+02 0.004 24.7 4.6 44 17-73 13-56 (146)
70 PRK08306 dipicolinate synthase 20.0 2.3E+02 0.0049 27.2 5.6 60 9-74 2-61 (296)
71 PF14542 Acetyltransf_CG: GCN5 20.0 1E+02 0.0022 23.6 2.6 37 190-237 39-75 (78)
No 1
>COG0473 LeuB Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-100 Score=729.92 Aligned_cols=283 Identities=19% Similarity=0.162 Sum_probs=252.6
Q ss_pred ccccEEEECCCCchHHHHHHHHHHHhcCC---CceEEEEEecchhhhhccCCcccHHHHHHHHhcCeeeecCCCCCCcch
Q 019837 8 VANPIVEMDGDEMTRVFWKSIKDKLIFPF---LELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEAR 84 (335)
Q Consensus 8 m~~~I~vipGDGIGpEv~~~~~~~~~~~~---~~i~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~lkg~~~~p~~~~ 84 (335)
|.++|+||||||||||||+++++++.+.. ++|+|+++++|+++|++||.+||++|+++|+++|++||||+++|....
T Consensus 2 ~~~~IavipGDGIGpEv~~~a~kVl~a~~~~~~~~e~~~~~~G~~~~~~~G~~lpeetl~~~~~~DaiL~Gavg~P~~~~ 81 (348)
T COG0473 2 KTYTIAVIPGDGIGPEVMAAALKVLEAAAEFGLDFEFEEAEVGGEAYDKHGEPLPEETLESLKKADAILFGAVGGPKWDP 81 (348)
T ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCceEEEEehhhHHHHHHcCCCCCHHHHHHHHhCCEEEEcccCCCCCCC
Confidence 56899999999999999999997665443 899999999999999999999999999999999999999999994321
Q ss_pred hhHHHhhhcCCCcchhHhhhcCceEEeecccccCCCCCCCCC--CCCEEEEeeccCccccccceeeeCCCceeeeeecCC
Q 019837 85 VKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGW--TKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEG 162 (335)
Q Consensus 85 ~~~~~l~~~~~s~~~~LRk~ldlyanvRPv~~~~~~~~~~~~--~~divivREnteg~Y~g~e~~~~~~g~~~~~~~~~~ 162 (335)
. ..+.+|.++.|||+||||||+||+ |++|++.+.. +.|||||||||||+|+|.++....+
T Consensus 82 ~-----~~~~~~~ll~lRk~l~lyANlRP~--k~~~~~k~~~~~~~D~viVREnTeG~Y~G~~~~~~~~----------- 143 (348)
T COG0473 82 L-----PRPERGLLLALRKELDLYANLRPA--KSLPGLKSPLVKGVDIVIVRENTEGLYFGEEGRILGG----------- 143 (348)
T ss_pred C-----CCcccchHHHHHHhcCceeeeeec--ccCCCCCCccCCCccEEEEeeCCCccccCCCccccCC-----------
Confidence 1 124567889999999999999998 7888887765 4799999999999999977531110
Q ss_pred CCccchhhhccccCccceeeeeeeCHHHHHHHHHHHHHHHHhC-CCCEEEEeCCCcccccchhHHHHHHHHHHhhhhccc
Q 019837 163 KDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQK-KWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKF 241 (335)
Q Consensus 163 g~~~~~~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r-~k~Vt~v~KaNVl~~~~g~f~~~~~eva~~eY~~~~ 241 (335)
+ +.+.++++|||+++|||+|+|||+|++| +|+||+|||+|||+.++++||++|+||+ ++|
T Consensus 144 ~--------------eva~~~~~~Tr~~~eRI~r~AFe~A~~R~~kkvTsv~KaNVl~~s~~lwrev~~eva-~~y---- 204 (348)
T COG0473 144 G--------------EVAIDTKVITRKGSERIARFAFELARKRGRKKVTSVHKANVLKLSDGLWREVVEEVA-KEY---- 204 (348)
T ss_pred C--------------eEEEEEEeccHHHHHHHHHHHHHHHHhhCCCceEEEehhhhhhhhhHHHHHHHHHHh-hcC----
Confidence 0 1255678999999999999999999999 6999999999999999999999999999 799
Q ss_pred cCCCceEeeeeHHHHHHHHHhCCCCc-EEEeCCchhhhHHhhhhhhcCccccccccccCCCCCceeeecCCCCccccccc
Q 019837 242 EAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRV 320 (335)
Q Consensus 242 ~~p~V~~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaA~l~GslGlapSanig~~~~~~~fEp~HGSAPdiagk 320 (335)
|||+++|+|||+++||||++|++| ||||+|||||||||+||+|+|||||+||||+|++..++||||+||||||||
T Consensus 205 --Pdv~~~~~~VD~aam~lV~~P~~FDViVt~NlFGDILSD~aa~l~GslGl~PSAnig~~~~~~lfEPvHGSAPDIA-- 280 (348)
T COG0473 205 --PDVELDHMYVDAAAMQLVRNPEQFDVIVTSNLFGDILSDEAAALTGSLGLAPSANLGDERGPALFEPVHGSAPDIA-- 280 (348)
T ss_pred --CCcchhHHhHHHHHHHHhhCccccCEEEEccchhHHHHhHHHHhcCccccCccCccCCCCCCceeecCCCCccccc--
Confidence 999999999999999999999999 999999999999999999999999999999998422699999999999997
Q ss_pred ccCCCCCCCCccccC
Q 019837 321 HQKDDQGSCTYYPWI 335 (335)
Q Consensus 321 ~~aGk~~~aNP~a~I 335 (335)
|||+ |||+|||
T Consensus 281 ---Gkgi-ANPiA~I 291 (348)
T COG0473 281 ---GKGI-ANPIATI 291 (348)
T ss_pred ---CCCc-cChHHHH
Confidence 6676 9999987
No 2
>PRK08299 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=5.5e-97 Score=725.77 Aligned_cols=331 Identities=74% Similarity=1.181 Sum_probs=282.1
Q ss_pred CccccccccEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecchhhhhccCCcccHHHHHHHHhcCeeeecCCCCCCc
Q 019837 3 FQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDE 82 (335)
Q Consensus 3 ~~~~~m~~~I~vipGDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~lkg~~~~p~~ 82 (335)
|+|||++.+|++||||||||||++++++++.+++++|+|+++++|+++|++||+++|++++++||++|++||||++||..
T Consensus 1 ~~~~~~~~~~~~~~gd~i~~~~~~~~~~~~~~~~~~i~~~~~d~G~~~~~~~G~~lp~~tl~~ik~~da~LkGav~tp~~ 80 (402)
T PRK08299 1 MAKIKVKNPVVELDGDEMTRIIWKFIKDKLILPYLDIDLEYYDLGIENRDATDDQVTIDAANAIKKYGVGVKCATITPDE 80 (402)
T ss_pred CCccccCCceEEecCCCchHHHHHHHHHHHhccCCCeEEEEEcCCHHHHHHhCCcCCHHHHHHHHHCCEEEECCccCCCc
Confidence 68999999999999999999999999998899999999999999999999999999999999999999999999999964
Q ss_pred chhhHHHhhhcCCCcchhHhhhcCceEEeecccccCCCCCCCCCCCCEEEEeeccCccccccceeeeCCCceeeeeecCC
Q 019837 83 ARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEG 162 (335)
Q Consensus 83 ~~~~~~~l~~~~~s~~~~LRk~ldlyanvRPv~~~~~~~~~~~~~~divivREnteg~Y~g~e~~~~~~g~~~~~~~~~~ 162 (335)
++..++.+.+.|+|+|++|||+||||+|+||++++++++..+++..||+|+||||||+|+|+++++.+.+.....|....
T Consensus 81 ~~~~~~~~~~~~~s~n~~LRk~ldLyaNiRPv~~k~i~~~~pg~~~~ivivREnTEg~Y~gi~~~~~r~~~~~~~~~~~~ 160 (402)
T PRK08299 81 ARVKEFNLKKMWKSPNGTIRNILGGTVFREPIICKNVPRLVPGWTKPIVIGRHAYGDQYRATDFKVPGKGKLTLVFTGED 160 (402)
T ss_pred ccccccCccccccCchHHHHHHcCCeEEEEeeecccccccCCCCCCCEEEEecccCCcccceeEEeccCccceeeeecCC
Confidence 22111122235889999999999999999998778866665665668999999999999999998766665544555443
Q ss_pred CCccchhhhccccCccceeeeeeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchhHHHHHHHHHHhhhhcccc
Q 019837 163 KDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFE 242 (335)
Q Consensus 163 g~~~~~~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r~k~Vt~v~KaNVl~~~~g~f~~~~~eva~~eY~~~~~ 242 (335)
|. +.+....++.+ .++....+|||++||||+|+||+||++|+++||++||+|||+.++|+||++|+|||+++|.++|.
T Consensus 161 g~-~~e~~~~~~~~-~~~~~~~~~Tr~~~eRIa~~AF~~A~~r~~kVt~v~KaNVlk~t~glf~~~~~evA~~~yp~~~~ 238 (402)
T PRK08299 161 GE-PIEHEVHDFPG-AGVAMGMYNLDESIRDFARASFNYGLDRKYPVYLSTKNTILKAYDGRFKDIFQEVYEAEFKEKFE 238 (402)
T ss_pred Cc-cccceeccccc-CceeEEEeecHHHHHHHHHHHHHHHHHcCCCEEEECCCCcchhhhHHHHHHHHHHHHHhCccccc
Confidence 31 11112222211 23343346999999999999999999999899999999999999999999999999558944444
Q ss_pred CCCceEeeeeHHHHHHHHHhCCCCcEEEeCCchhhhHHhhhhhhcCccccccccccCCCCCceeeecCCCCccccccccc
Q 019837 243 AAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQ 322 (335)
Q Consensus 243 ~p~V~~~~~~VDa~~~~lv~~P~~FViv~~NlfGDILSDlaA~l~GslGlapSanig~~~~~~~fEp~HGSAPdiagk~~ 322 (335)
+++|+++++|||++|||||++|++|||||+|||||||||++|+|+|||||+||+|+|+++.++||||+|||||||+++||
T Consensus 239 ~~~i~~~~~~vDa~~~~lv~~P~~fVivt~NlfGDIlSDlaa~l~GglG~apSanig~~~~~a~FEp~HGSAPD~~~~~I 318 (402)
T PRK08299 239 AAGITYEHRLIDDMVASALKWEGGYVWACKNYDGDVQSDTVAQGFGSLGLMTSVLMTPDGKTVEAEAAHGTVTRHYRQHQ 318 (402)
T ss_pred cCcEEEEEeeHHHHHHHHHhCcCCcEEEEeccccchhhhHHHhhcCCcccccceeeCCCCCcEEEecCCCCCcccccccc
Confidence 44799999999999999999999999999999999999999999999999999999987512899999999999999999
Q ss_pred CCCCCCCCccccC
Q 019837 323 KDDQGSCTYYPWI 335 (335)
Q Consensus 323 aGk~~~aNP~a~I 335 (335)
+|||++|||+|||
T Consensus 319 aGk~~~ANP~A~I 331 (402)
T PRK08299 319 KGEETSTNPIASI 331 (402)
T ss_pred cCCCCccCHHHHH
Confidence 9999559999986
No 3
>PLN03065 isocitrate dehydrogenase (NADP+); Provisional
Probab=100.00 E-value=5.1e-95 Score=721.09 Aligned_cols=332 Identities=82% Similarity=1.321 Sum_probs=309.7
Q ss_pred CccccccccEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecchhhhhccCCcccHHHHHHHHhcCeeeecCCCCCCc
Q 019837 3 FQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDE 82 (335)
Q Consensus 3 ~~~~~m~~~I~vipGDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~lkg~~~~p~~ 82 (335)
++||||..||++|+|||||++||+.++++++.++++|+|+++|+|.+++++||+++|+|+++++|++|++||||++||+.
T Consensus 71 ~~ki~~~~piv~~~GDem~r~i~~~i~~~li~p~~di~~~~~dlG~e~rd~Tgd~v~~da~~aikk~~v~lKgAt~TP~~ 150 (483)
T PLN03065 71 ADRIKVQNPIVEMDGDEMTRVIWQMIKDKLIFPYLDLDIKYFDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDE 150 (483)
T ss_pred hccccccCCeEEecCCcchHHHHHHHHHHHhcCCCCceEEEEeCcHHHHHhhCCcCCHHHHHHHHHcCEEEECcccCCcc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred chhhHHHhhhcCCCcchhHhhhcCceEEeecccccCCCCCCCCCCCCEEEEeeccCccccccceeeeCCCceeeeeecCC
Q 019837 83 ARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEG 162 (335)
Q Consensus 83 ~~~~~~~l~~~~~s~~~~LRk~ldlyanvRPv~~~~~~~~~~~~~~divivREnteg~Y~g~e~~~~~~g~~~~~~~~~~ 162 (335)
++++|++|.+.|+|||++||+.||||+|+|||.++++|++.++|..||+|.|||+||.|.++|+++.++|+++..|.+++
T Consensus 151 ~rv~e~~lk~~w~SpN~tiR~~Ldl~v~rrPi~~~ni~r~vpg~~~pI~i~Rha~gd~Y~~iD~vi~~~g~~~~~~~rEn 230 (483)
T PLN03065 151 ARVKEFGLKSMWRSPNGTIRNILNGTVFREPILCKNIPRLVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFVPED 230 (483)
T ss_pred ccccccccccccCCccHHHHHHcCCeEEeeeeeccccCccCCCCCCCeEEeecccCCCcCceEEEEecCCeeEEEeecCC
Confidence 77788888889999999999999999999999889999999999999999999999999999999999999999999987
Q ss_pred CCccchhhhccccCccceeeeeeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchhHHHHHHHHHHhhhhcccc
Q 019837 163 KDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFE 242 (335)
Q Consensus 163 g~~~~~~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r~k~Vt~v~KaNVl~~~~g~f~~~~~eva~~eY~~~~~ 242 (335)
+..+.+.++++|++ +++++.+++|+++++||||+||+||++|+++||++||+||||.|||+|+++|+||++++||.+|.
T Consensus 231 te~~~e~~v~~f~~-~gva~~~~nT~~sieriAr~AF~yA~~rk~~Vt~v~KaNILK~~DGlF~dif~eVa~~eyk~~yp 309 (483)
T PLN03065 231 GNAPVELDVYDFKG-PGVALAMYNVDESIRAFAESSMAMALQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEEQWKQKFE 309 (483)
T ss_pred CCCcceeEeeccCC-CCeEEEEEECHHHHHHHHHHHHHHHHHcCCCEEEEeCCCcccchHHHHHHHHHHHHHHhhhhcCC
Confidence 65444445556654 45677789999999999999999999999999999999999999999999999999778888883
Q ss_pred CCCceEeeeeHHHHHHHHHhCCCCcEEEeCCchhhhHHhhhhhhcCccccccccccCCCCCceeeecCCCCccccccccc
Q 019837 243 AAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQ 322 (335)
Q Consensus 243 ~p~V~~~~~~VDa~~~~lv~~P~~FViv~~NlfGDILSDlaA~l~GslGlapSanig~~~~~~~fEp~HGSAPdiagk~~ 322 (335)
+.+|+++|+|||+||||||++|++|||||+|||||||||++|+++|||||+||+|+|+++..++|||+|||||||+.+|+
T Consensus 310 ~~~I~~e~~lIDa~~~~lvk~P~~FViv~~NlfGDIlSDl~A~l~GsLGl~pSanig~dg~~~~fEa~HGSapd~~~~~i 389 (483)
T PLN03065 310 EHSIWYEHRLIDDMVAYAVKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQ 389 (483)
T ss_pred CCCceEEeeeHHHHHHHHHhCCCCcEEEeeccchhhhhHHHHHhcCchhhcccceeCCCCceEEEecCcCcCccccchhc
Confidence 33799999999999999999999999999999999999999999999999999999998633799999999999999999
Q ss_pred CCCCCCCCccccC
Q 019837 323 KDDQGSCTYYPWI 335 (335)
Q Consensus 323 aGk~~~aNP~a~I 335 (335)
+||+++|||+|||
T Consensus 390 aGk~t~ANPiA~I 402 (483)
T PLN03065 390 KGQETSTNSIASI 402 (483)
T ss_pred cCCCCCcChHHHH
Confidence 9999669999987
No 4
>PRK08997 isocitrate dehydrogenase; Provisional
Probab=100.00 E-value=5.8e-95 Score=700.10 Aligned_cols=277 Identities=18% Similarity=0.190 Sum_probs=249.7
Q ss_pred ccccEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecchhhhhccCCcccHHHHHHHHhcCeeeecCCCCCCcchhhH
Q 019837 8 VANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKE 87 (335)
Q Consensus 8 m~~~I~vipGDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~lkg~~~~p~~~~~~~ 87 (335)
|.++|++|||||||||||+++++++.+..++|+|+++++|.+++++||++||++++++|+++|++||||+++|..
T Consensus 1 ~~~~I~vipGDGIGpEV~~~a~~vl~~~~~~~~~~~~~~G~~~~~~~G~~lp~~~l~~~~~~da~L~Gavg~p~~----- 75 (334)
T PRK08997 1 MKQTITVIPGDGIGPSIIDATLKILDKLGCDFEYEFADAGLTALEKHGELLPQRTLDLIEKNKIALKGPLTTPVG----- 75 (334)
T ss_pred CCcEEEEECCCcccHHHHHHHHHHHHhcCCCeEEEEEcCCHHHHHhhCCCCCHHHHHHHHHCCEEEECcccCCCC-----
Confidence 668999999999999999999976655678999999999999999999999999999999999999999999842
Q ss_pred HHhhhcCCCcchhHhhhcCceEEeecccccCCCCCCCCC-CCCEEEEeeccCccccccceeeeCCCceeeeeecCCCCcc
Q 019837 88 FVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGW-TKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEK 166 (335)
Q Consensus 88 ~~l~~~~~s~~~~LRk~ldlyanvRPv~~~~~~~~~~~~-~~divivREnteg~Y~g~e~~~~~~g~~~~~~~~~~g~~~ 166 (335)
.++.|+++.|||+||||||+||+ |++|++.+.+ ++|++||||||||+|+|.++... ++ +
T Consensus 76 ----~~~~~~~~~LR~~ldlyanvRP~--k~~~g~~~~~~~iD~vivREnteG~Y~g~~~~~~-~~----------~--- 135 (334)
T PRK08997 76 ----EGFTSINVTLRKKFDLYANVRPV--LSFPGTKARYDNIDIITVRENTEGMYSGEGQTVS-ED----------G--- 135 (334)
T ss_pred ----cCccchHHHHHHHcCCeEEEeec--ccCCCCCCccCCcCEEEEEeccCceecCccceec-CC----------C---
Confidence 13568899999999999999997 7778776554 57999999999999999864321 00 0
Q ss_pred chhhhccccCccceeeeeeeCHHHHHHHHHHHHHHHHhCC-CCEEEEeCCCcccccchhHHHHHHHHHHhhhhccccCCC
Q 019837 167 TELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKK-WPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAG 245 (335)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r~-k~Vt~v~KaNVl~~~~g~f~~~~~eva~~eY~~~~~~p~ 245 (335)
..+..+++|||+++|||+|+||+||++|+ ++||++||+|||+.|+|+|+++|+||| ++| |+
T Consensus 136 -----------~~a~~~~~~Tr~~~eRi~r~Af~~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva-~~y------P~ 197 (334)
T PRK08997 136 -----------ETAEATSIITRKGAERIVRFAYELARKEGRKKVTAVHKANIMKSTSGLFLKVAREVA-LRY------PD 197 (334)
T ss_pred -----------ceEEEEEEeeHHHHHHHHHHHHHHHHhcCCCeEEEEeCCCcchhhhHHHHHHHHHHH-hhC------CC
Confidence 12445789999999999999999999996 679999999999999999999999999 599 99
Q ss_pred ceEeeeeHHHHHHHHHhCCCCc-EEEeCCchhhhHHhhhhhhcCccccccccccCCCCCceeeecCCCCcccccccccCC
Q 019837 246 IWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKD 324 (335)
Q Consensus 246 V~~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaA~l~GslGlapSanig~~~~~~~fEp~HGSAPdiagk~~aG 324 (335)
|+++|+|||++|||||++|++| ||||+|||||||||++|+|+|||||+||+|+|++ ++||||+|||||||| |
T Consensus 198 V~~~~~~vDa~~~~lv~~P~~fdVivt~NlfGDILSDlaa~l~GglGl~psanig~~--~a~FEp~HGSAPdIA-----G 270 (334)
T PRK08997 198 IEFEEMIVDATCMQLVMNPEQFDVIVTTNLFGDILSDLCAGLVGGLGMAPGANIGRD--AAIFEAVHGSAPDIA-----G 270 (334)
T ss_pred eEEEeeeHHHHHHHHhhCcccCcEEEEcCcccchhhHHHHHhcCCCCcCcceeECCC--ceEEECCCCchhhhC-----C
Confidence 9999999999999999999999 9999999999999999999999999999999976 499999999999997 5
Q ss_pred CCCCCCccccC
Q 019837 325 DQGSCTYYPWI 335 (335)
Q Consensus 325 k~~~aNP~a~I 335 (335)
||+ |||+|||
T Consensus 271 k~i-ANP~a~I 280 (334)
T PRK08997 271 KNL-ANPTSVI 280 (334)
T ss_pred CCc-cCcHHHH
Confidence 666 9999986
No 5
>PTZ00435 isocitrate dehydrogenase; Provisional
Probab=100.00 E-value=3.5e-94 Score=707.22 Aligned_cols=333 Identities=72% Similarity=1.197 Sum_probs=303.5
Q ss_pred CCccccccccEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecchhhhhccCCcccHHHHHHHHhcCeeeecCCCCCC
Q 019837 2 AFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPD 81 (335)
Q Consensus 2 ~~~~~~m~~~I~vipGDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~lkg~~~~p~ 81 (335)
.++||||..|++.|.||.|.+-+|+-.++.++.++++|+|+++++|.+++++||+++|++++++||++|++||||++||.
T Consensus 2 ~~~~~~~~~~~v~~~~~em~~~~~~~~~~~~~~~~~~i~~~~~d~g~~~~~~tg~~lp~ea~eaik~~~v~LkGa~~TP~ 81 (413)
T PTZ00435 2 TGGKIKVKNPVVELDGDEMTRIIWKMIKEKLILPYLDVPIKYYDLSIENRDKTDDKVTVDAAEAIKKHKVGIKCATITPD 81 (413)
T ss_pred CcccccccCCeEEecccHHHHHHHHHHHHhhccCCCCceEEEEeCcHHHHHhcCCcCCHHHHHHHHHcCEEEECcccCCc
Confidence 47899999999999999999999999998999999999999999999999999999999999999999999999999998
Q ss_pred cchhhHHHhhhcCCCcchhHhhhcCceEEeecccccCCCCCCCCCCCCEEEEeeccCccccccceeeeCCCceeeeeecC
Q 019837 82 EARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPE 161 (335)
Q Consensus 82 ~~~~~~~~l~~~~~s~~~~LRk~ldlyanvRPv~~~~~~~~~~~~~~divivREnteg~Y~g~e~~~~~~g~~~~~~~~~ 161 (335)
.++..++.|.++|+|||++||+.||||||+|||.++++|++.++|+.|++++||||||.|.++|+++.++++.++.|.+.
T Consensus 82 ~~~~~~~~l~~~~~S~n~~LR~~ldlyanvRPi~~k~i~~~~pg~~~~i~i~Ren~e~~y~~id~vi~rent~e~~y~~~ 161 (413)
T PTZ00435 82 EARVKEFNLKKMWKSPNGTIRNILDGTVFREPIIIKNIPRLVPGWKKPIVIGRHAFGDQYKATDFVVDGPGKLELVFTPA 161 (413)
T ss_pred cccccccccccccCCchHHHHHHcCCeEEEeeeeccccCccCCCCCCCeeeeccccCCCcCceEEEEecCCEEEEEEecC
Confidence 65444677778899999999999999999999867999998888899999999999999999999999999888899998
Q ss_pred CCCccchhhhccccCccceeeeeeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchhHHHHHHHHHHhhhhccc
Q 019837 162 GKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKF 241 (335)
Q Consensus 162 ~g~~~~~~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r~k~Vt~v~KaNVl~~~~g~f~~~~~eva~~eY~~~~ 241 (335)
+|..+.+..+++|.. ++++++.+|||+++|||||+||+||++|+++||++||+|||+.+||+||++|+|||+++|.++|
T Consensus 162 ~g~~~~~~~~~~~~~-~~v~~~~~~Tr~~~eRIar~AF~~A~~r~~~Vt~v~KaNVlk~~dglf~~~~~eva~~eYpe~~ 240 (413)
T PTZ00435 162 DGSEPQRVDVFDFKG-GGVAMGMYNTDESIEGFARSCFQYALDRKMPLYLSTKNTILKKYDGRFKDIFQEIYDEEYKAKF 240 (413)
T ss_pred CCCcceeeeeeccCC-CCeeEEEEeCHHHHHHHHHHHHHHHHHcCCCEEEECCCCcchhhHHHHHHHHHHHHHHhCcccc
Confidence 775555555555653 3566677999999999999999999999989999999999999999999999999965795555
Q ss_pred cCCCceEeeeeHHHHHHHHHhCCCCcEEEeCCchhhhHHhhhhhhcCccccccccccCCCCCceeeecCCCCcccccccc
Q 019837 242 EAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVH 321 (335)
Q Consensus 242 ~~p~V~~~~~~VDa~~~~lv~~P~~FViv~~NlfGDILSDlaA~l~GslGlapSanig~~~~~~~fEp~HGSAPdiagk~ 321 (335)
.+++|+++|+|||++|||||++|++|||||+|||||||||++|+|+|||||+||+|+|+++.++||||+|||||||+|||
T Consensus 241 ~~~~I~~~~~lVDa~~m~lv~~P~~fViV~~NlfGDIlSDlaA~l~GglGlapSanig~d~~~a~FEp~HGSApdi~~~~ 320 (413)
T PTZ00435 241 EKAGLWYEHRLIDDMVAQAIKSEGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSVLVCPDGKTVEAEAAHGTVTRHYRQH 320 (413)
T ss_pred ccCCEEEEEeeHHHHHHHHhhCCCCeEEEeecccchhhhHHHHHhcCcccccccceeCCCCCeEEEEcCcCCccccchhh
Confidence 55599999999999999999999999999999999999999999999999999999998751289999999999999999
Q ss_pred cCCCCCCCCccccC
Q 019837 322 QKDDQGSCTYYPWI 335 (335)
Q Consensus 322 ~aGk~~~aNP~a~I 335 (335)
++||+.+|||+|||
T Consensus 321 iaGk~~~ANP~A~I 334 (413)
T PTZ00435 321 QKGKETSTNSIASI 334 (413)
T ss_pred hcCCCCccChHHHH
Confidence 99974349999986
No 6
>TIGR00127 nadp_idh_euk isocitrate dehydrogenase, NADP-dependent, eukaryotic type. This model does not discriminate cytosolic, mitochondrial, and chloroplast proteins. However, the model starts very near the amino end of the cytosolic form; the finding of additional amino-terminal sequence may indicate a transit peptide.
Probab=100.00 E-value=8.5e-94 Score=703.78 Aligned_cols=332 Identities=76% Similarity=1.249 Sum_probs=298.3
Q ss_pred ccccccccEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecchhhhhccCCcccHHHHHHHHhcCeeeecCCCCCCcc
Q 019837 4 QKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEA 83 (335)
Q Consensus 4 ~~~~m~~~I~vipGDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~lkg~~~~p~~~ 83 (335)
.||||.+|++.|.||.|.+-+|+..++.++.++++|+|+++|+|.+++++||+++|++++++||++|++||||++||...
T Consensus 1 ~~~~~~~p~v~~~g~em~~~~~~~~~~~~~~~~~~i~~~~~d~g~~~~~~tg~~lp~ea~eaik~~dv~LkGa~~TP~~~ 80 (409)
T TIGR00127 1 SKIKVANPVVEMDGDEMTRIIWELIKDKLILPYVELDLKYYDLGVEYRDATNDQVTVDAAEAIKKYNVGVKCATITPDEA 80 (409)
T ss_pred CCccccCCeEEecCcHHHHHHHHHHHHhhccCCcCceEEEEeCcHHHHHhhCCcCCHHHHHHHHHcCEEEECcccCCccc
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999765
Q ss_pred hhhHHHhhhcCCCcchhHhhhcCceEEeecccccCCCCCCCCCCCCEEEEeeccCccccccceeeeCCCceeeeeecCCC
Q 019837 84 RVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGK 163 (335)
Q Consensus 84 ~~~~~~l~~~~~s~~~~LRk~ldlyanvRPv~~~~~~~~~~~~~~divivREnteg~Y~g~e~~~~~~g~~~~~~~~~~g 163 (335)
+..++.|.++|+|||++||+.||||||+|||.++++++..++|..||+|+||||||.|.++|+++.++|+.|+.|.|.++
T Consensus 81 ~~~~~~l~k~~~S~n~~lR~~ldlyanvRPi~~~~~~~~~pg~~~~i~i~R~~~~~~y~~iD~vivREnt~Eg~Y~g~e~ 160 (409)
T TIGR00127 81 RVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWEKPIIIGRHAFGDQYRATDFVVPGPGKLELVYKPKDG 160 (409)
T ss_pred cccccccccccCCccHHHHHHcCCeEEeeeccccccCccCCCCCCCeeeeccccCCCcCceEEEEecCCeeeEEEECCCC
Confidence 44456666789999999999999999999987788888888888999999999999999999999999999999999865
Q ss_pred CccchhhhccccCccceeeeeeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchhHHHHHHHHHHhhhhccccC
Q 019837 164 DEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEA 243 (335)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r~k~Vt~v~KaNVl~~~~g~f~~~~~eva~~eY~~~~~~ 243 (335)
..+.+.....+...++++++++|||+++|||||+||+||++|+++||++||+|||+.+||+||++|+||++++|.++|..
T Consensus 161 ~~~~~~~~~~~~~~~~v~~~~~~T~~~~eRIar~AF~~A~~~~~~Vt~v~KaNVlk~~dglf~~~~~eva~~eYp~~~~~ 240 (409)
T TIGR00127 161 TQKVTLKVYDFEEGGGVAMAMYNTDESIEGFAHSSFQLALEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEAQYKSKFEA 240 (409)
T ss_pred CcccceeeeeccCCCCeEEEEEECHHHHHHHHHHHHHHHHHcCCCEEEEcCcchhhhhhHHHHHHHHHHHHHhCcccccC
Confidence 33222111222211245667789999999999999999999998999999999999999999999999974699888888
Q ss_pred CCceEeeeeHHHHHHHHHhCCCCcEEEeCCchhhhHHhhhhhhcCccccccccccCCCCCceeeecCCCCcccccccccC
Q 019837 244 AGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQK 323 (335)
Q Consensus 244 p~V~~~~~~VDa~~~~lv~~P~~FViv~~NlfGDILSDlaA~l~GslGlapSanig~~~~~~~fEp~HGSAPdiagk~~a 323 (335)
|+|+++|+|||++|||||++|++|||||+|||||||||++|+|+|||||+||+|+|+++...||||+|||||||+|||+|
T Consensus 241 ~~I~~~~~lVDa~~m~lv~~P~~fViv~~NlfGDIlSDlaA~l~GslGl~pSanig~~~~~~~fEp~HGSApdi~~~~ia 320 (409)
T TIGR00127 241 LGIWYEHRLIDDMVAQALKSEGGFIWACKNYDGDVQSDIVAQGFGSLGLMTSVLICPDGKTFEAEAAHGTVTRHYRMYQK 320 (409)
T ss_pred CCEEEEEeeHHHHHHHHhhCCCCcEEEecccchHHHHHHHHHhcCchhhhheeeeCCCCceEEeccccCCCcccchhhhC
Confidence 89999999999999999999999999999999999999999999999999999999876225789999999999999999
Q ss_pred CCCCCCCccccC
Q 019837 324 DDQGSCTYYPWI 335 (335)
Q Consensus 324 Gk~~~aNP~a~I 335 (335)
||+.+|||+|||
T Consensus 321 Gk~~~ANP~A~I 332 (409)
T TIGR00127 321 GQETSTNSIASI 332 (409)
T ss_pred CCCCccChHHHH
Confidence 974349999986
No 7
>PLN00118 isocitrate dehydrogenase (NAD+)
Probab=100.00 E-value=1.1e-93 Score=697.89 Aligned_cols=274 Identities=23% Similarity=0.215 Sum_probs=249.6
Q ss_pred ccEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecchhhhhccCCcccHHHHHHHHhcCeeeecCCCCCCcchhhHHH
Q 019837 10 NPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFV 89 (335)
Q Consensus 10 ~~I~vipGDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~lkg~~~~p~~~~~~~~~ 89 (335)
++|++|||||||||||+++++++...+++|+|+++++|.++|++||+++|++++++|+++|++||||+++|..
T Consensus 42 ~~I~vipGDGIGpEV~~aa~~Vl~a~~~~ie~~~~~~G~~~~~~~G~~lp~~~l~~~~~~da~L~G~i~~p~~------- 114 (372)
T PLN00118 42 ITATLFPGDGIGPEIAESVKQVFTAAGVPIEWEEHYVGTTVDPRTGSFLTWESLESVRRNKVGLKGPMATPIG------- 114 (372)
T ss_pred eEEEEECCCcccHHHHHHHHHHHHhcCCCeEEEEEeCcHHHHHhcCCcCCHHHHHHHHHCCEEEECCccCCcc-------
Confidence 6899999999999999999977766689999999999999999999999999999999999999999999842
Q ss_pred hhhcCCCcchhHhhhcCceEEeecccccCCCCCCCCC-CCCEEEEeeccCccccccceeeeCCCceeeeeecCCCCccch
Q 019837 90 LKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGW-TKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTE 168 (335)
Q Consensus 90 l~~~~~s~~~~LRk~ldlyanvRPv~~~~~~~~~~~~-~~divivREnteg~Y~g~e~~~~~~g~~~~~~~~~~g~~~~~ 168 (335)
.+++|+|++|||+||||||+||+ +++|++.+.+ ++|+|||||||||+|+|.++... +|
T Consensus 115 --~~~~s~~~~LRk~ldLyaNvRPv--r~~pg~~~~~~~iD~vIVREnteG~Y~g~~~~~~-~g---------------- 173 (372)
T PLN00118 115 --KGHRSLNLTLRKELGLYANVRPC--YSLPGYKTRYDDVDLVTIRENTEGEYSGLEHQVV-RG---------------- 173 (372)
T ss_pred --ccccCchHHHHHHcCCeeeeccc--ccCCCccCcccCceEEEEEecCCCcccceeeecc-CC----------------
Confidence 24678999999999999999997 6778776554 57999999999999999875431 11
Q ss_pred hhhccccCccceeeeeeeCHHHHHHHHHHHHHHHHhCC-CCEEEEeCCCcccccchhHHHHHHHHHHhhhhccccCCCce
Q 019837 169 LEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKK-WPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIW 247 (335)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r~-k~Vt~v~KaNVl~~~~g~f~~~~~eva~~eY~~~~~~p~V~ 247 (335)
.+..+++|||+++|||+|+||+||++|+ |+||++||+|||+.|+|+|+++|+||+ ++| |+|+
T Consensus 174 ----------v~~~~~v~Tr~~~eRIar~AF~~A~~r~~k~Vt~v~KaNvlk~tdglf~e~~~eva-~ey------PdI~ 236 (372)
T PLN00118 174 ----------VVESLKIITRQASLRVAEYAFHYAKTHGRKRVSAIHKANIMKKTDGLFLKCCREVA-EKY------PEIV 236 (372)
T ss_pred ----------eEEEEEecCHHHHHHHHHHHHHHHHHcCCCeEEEEECCccchhhhHHHHHHHHHHH-hhC------CCce
Confidence 1234689999999999999999999996 679999999999999999999999999 599 9999
Q ss_pred EeeeeHHHHHHHHHhCCCCc-EEEeCCchhhhHHhhhhhhcCccccccccccCCCCCceeeecCCCCcccccccccCCCC
Q 019837 248 YEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKDDQ 326 (335)
Q Consensus 248 ~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaA~l~GslGlapSanig~~~~~~~fEp~HGSAPdiagk~~aGk~ 326 (335)
++++|||++|||||++|++| ||||+|||||||||++|+++|||||+||+|+|+++ ++||||+|||||||| |||
T Consensus 237 ~~~~~VDa~a~~Lv~~P~~fDViVt~NLfGDILSDlaa~l~GglGlapSanig~~~-~a~FEpvHGSAPdIA-----Gk~ 310 (372)
T PLN00118 237 YEEVIIDNCCMMLVKNPALFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGENG-LALAEAVHGSAPDIA-----GKN 310 (372)
T ss_pred EEeeeHHHHHHHhccCcccCcEEEEcCcccchhhHHHHHhcCCcccCcceeecCCC-CeEEECCCCChhhhC-----CCC
Confidence 99999999999999999999 99999999999999999999999999999999876 599999999999997 666
Q ss_pred CCCCccccC
Q 019837 327 GSCTYYPWI 335 (335)
Q Consensus 327 ~~aNP~a~I 335 (335)
+ |||+|||
T Consensus 311 i-ANP~A~I 318 (372)
T PLN00118 311 L-ANPTALL 318 (372)
T ss_pred C-cCcHHHH
Confidence 6 9999986
No 8
>PRK03437 3-isopropylmalate dehydrogenase; Provisional
Probab=100.00 E-value=2.3e-93 Score=691.83 Aligned_cols=282 Identities=16% Similarity=0.137 Sum_probs=247.1
Q ss_pred ccEEEECCCCchHHHHHHHHHHHhcC---CCceEEEEEecchhhhhccCCcccHHHHHHHHhcCeeeecCCCCCCcchhh
Q 019837 10 NPIVEMDGDEMTRVFWKSIKDKLIFP---FLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVK 86 (335)
Q Consensus 10 ~~I~vipGDGIGpEv~~~~~~~~~~~---~~~i~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~lkg~~~~p~~~~~~ 86 (335)
++|+||||||||||||+++++++.+. +++|+|+++++|++++++||++||++|+++|+++|++||||+++|....
T Consensus 5 ~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~L~Gavg~p~~~~-- 82 (344)
T PRK03437 5 MKLAVIPGDGIGPEVVAEALKVLDAVAAGGPGVETTEYDLGARRYLRTGETLPDSVLAELRQHDAILLGAIGDPSVPS-- 82 (344)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHHHhcCCceEEEEEeCCHHHHHHHCCcCCHHHHHHHHHCCEEEEeecCCCCCCC--
Confidence 68999999999999999999766533 7899999999999999999999999999999999999999999984210
Q ss_pred HHHhhhcCCCcchhHhhhcCceEEeecccccCCCCCCCCC----CCCEEEEeeccCccccccceeeeCCCceeeeeecCC
Q 019837 87 EFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGW----TKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEG 162 (335)
Q Consensus 87 ~~~l~~~~~s~~~~LRk~ldlyanvRPv~~~~~~~~~~~~----~~divivREnteg~Y~g~e~~~~~~g~~~~~~~~~~ 162 (335)
. ...+|++++|||+||||+|+||+ +++|++.+++ ++||+||||||||+|+|++... .+|.
T Consensus 83 ~----~~~~~~~~~LRk~ldLyaNvRP~--r~~pg~~sp~k~~~~iD~vivREnteG~Y~g~~~~~-~~~~--------- 146 (344)
T PRK03437 83 G----VLERGLLLKLRFALDHYVNLRPS--KLYPGVTSPLAGPGDIDFVVVREGTEGPYTGNGGAL-RVGT--------- 146 (344)
T ss_pred C----CcccchHHHHHHHcCCeEEEEEe--ecCCCCCCcCCCCCCCCEEEEEECCCccccCCcccc-cCCC---------
Confidence 0 12466789999999999999998 6677665443 5799999999999999976332 1111
Q ss_pred CCccchhhhccccCccceeeeeeeCHHHHHHHHHHHHHHHHhCC-CCEEEEeCCCcccccchhHHHHHHHHHHhhhhccc
Q 019837 163 KDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKK-WPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKF 241 (335)
Q Consensus 163 g~~~~~~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r~-k~Vt~v~KaNVl~~~~g~f~~~~~eva~~eY~~~~ 241 (335)
. . +.++.+++|||+++|||+|+||+||++|+ |+||++||+|||+.|+|+|+++|+||| ++|
T Consensus 147 --~-~----------~~a~~~~~~Tr~~~~RIa~~AF~~A~~r~~k~Vt~v~KaNvl~~t~glf~~~~~eva-~~y---- 208 (344)
T PRK03437 147 --P-H----------EVATEVSVNTAFGVERVVRDAFERAQKRPRKHLTLVHKTNVLTFAGDLWQRTVDEVA-AEY---- 208 (344)
T ss_pred --c-c----------eeEEEEEEecHHHHHHHHHHHHHHHHhCCCCeEEEEECCccccccchHHHHHHHHHH-hhC----
Confidence 0 0 13555789999999999999999999995 679999999999999999999999999 599
Q ss_pred cCCCceEeeeeHHHHHHHHHhCCCCc-EEEeCCchhhhHHhhhhhhcCccccccccccCCCCC-ceeeecCCCCcccccc
Q 019837 242 EAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGK-TIEAEAAHGTVTRHYR 319 (335)
Q Consensus 242 ~~p~V~~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaA~l~GslGlapSanig~~~~-~~~fEp~HGSAPdiag 319 (335)
|+|+++++|||++|||||++|++| ||||+|||||||||++|+|+|||||+||+|+|+++. ++||||+||||||||
T Consensus 209 --pdV~~~~~~vDa~~~~Lv~~P~~fDVIVt~NlfGDILSDlaa~l~GglGl~pSanig~~g~~~a~FEp~HGSAPdiA- 285 (344)
T PRK03437 209 --PDVTVDYQHVDAATIFMVTDPSRFDVIVTDNLFGDIITDLAAAVTGGIGLAASGNINPTGTNPSMFEPVHGSAPDIA- 285 (344)
T ss_pred --CCceEeehhHHHHHHHHhcCcccCcEEEEcccchhhhhHHHHHhcCCccccceeeecCCCCcceeEecCCCCchhhc-
Confidence 999999999999999999999999 999999999999999999999999999999997642 489999999999997
Q ss_pred cccCCCCCCCCccccC
Q 019837 320 VHQKDDQGSCTYYPWI 335 (335)
Q Consensus 320 k~~aGk~~~aNP~a~I 335 (335)
|||+ |||+|||
T Consensus 286 ----Gk~i-ANP~a~I 296 (344)
T PRK03437 286 ----GQGI-ADPTAAI 296 (344)
T ss_pred ----CCCc-cChHHHH
Confidence 6666 9999987
No 9
>PRK14025 multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase; Provisional
Probab=100.00 E-value=2.5e-93 Score=687.74 Aligned_cols=269 Identities=21% Similarity=0.191 Sum_probs=244.6
Q ss_pred ccEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecchhhhhccCCcccHHHHHHHHhcCeeeecCCCCCCcchhhHHH
Q 019837 10 NPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFV 89 (335)
Q Consensus 10 ~~I~vipGDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~lkg~~~~p~~~~~~~~~ 89 (335)
++|++|||||||||||+++++++...+++|+|+++++|.+++++||+++|++++++||++|++||||+++|.
T Consensus 2 ~~I~vipGDGIGpEv~~~~~~vl~~~~~~~~~~~~~~G~~~~~~~G~~lp~~~l~~~~~~da~l~G~vg~p~-------- 73 (330)
T PRK14025 2 HKICVIEGDGIGKEVVPAALHVLEATGLPFEFVYAEAGDEVFEKTGKALPEETIEAAKEADAVLFGAAGETA-------- 73 (330)
T ss_pred eEEEEECCCcccHHHHHHHHHHHHhcCCcEEEEEEcCCHHHHHHhCCCCCHHHHHHHHHCCEEEEccCCCCc--------
Confidence 689999999999999999998776668999999999999999999999999999999999999999999873
Q ss_pred hhhcCCCcchhHhhhcCceEEeecccccCCCCCCCCC-CCCEEEEeeccCccccccceeeeCCCceeeeeecCCCCccch
Q 019837 90 LKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGW-TKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTE 168 (335)
Q Consensus 90 l~~~~~s~~~~LRk~ldlyanvRPv~~~~~~~~~~~~-~~divivREnteg~Y~g~e~~~~~~g~~~~~~~~~~g~~~~~ 168 (335)
.|.++.|||+||||||+||+ |++|++.+.. ++|++||||||||+|+|+++... ++
T Consensus 74 -----~~~~~~LR~~ldlyanvRP~--r~~pg~~~~~~~iD~vivREnteG~Y~g~~~~~~-~~---------------- 129 (330)
T PRK14025 74 -----ADVIVKLRRILDTYANVRPV--KSYKGVKCLYPDIDYVIVRENTEGLYKGIEAEIA-DG---------------- 129 (330)
T ss_pred -----cchHHHHHHHcCCeEEEEEe--ecCCCCCCccCCcCEEEEEECCCceecCcccccC-CC----------------
Confidence 25579999999999999998 6778776543 57999999999999999875421 11
Q ss_pred hhhccccCccceeeeeeeCHHHHHHHHHHHHHHHHhC----C-CCEEEEeCCCcccccchhHHHHHHHHHHhhhhccccC
Q 019837 169 LEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQK----K-WPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEA 243 (335)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r----~-k~Vt~v~KaNVl~~~~g~f~~~~~eva~~eY~~~~~~ 243 (335)
.+..+++|||+++|||+|+||+||++| + |+||++||+|||+.|+|+|+++|+||| ++|
T Consensus 130 ----------~~~~~~~~Tr~~~~Ri~r~Af~~A~~r~~~~~~k~Vt~v~KaNvl~~t~glf~e~~~eva-~~y------ 192 (330)
T PRK14025 130 ----------VTVATRVITRKASERIFRFAFEMAKRRKKMGKEGKVTCAHKANVLKKTDGLFKKTFYEVA-KEY------ 192 (330)
T ss_pred ----------ceEEeEeccHHHHHHHHHHHHHHHHhccccCCCCeEEEEECCCchhhhhHHHHHHHHHHH-hhC------
Confidence 123468999999999999999999999 4 579999999999999999999999999 599
Q ss_pred CCceEeeeeHHHHHHHHHhCCCCc-EEEeCCchhhhHHhhhhhhcCccccccccccCCCCCceeeecCCCCccccccccc
Q 019837 244 AGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQ 322 (335)
Q Consensus 244 p~V~~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaA~l~GslGlapSanig~~~~~~~fEp~HGSAPdiagk~~ 322 (335)
|+|+++++|||++|||||++|++| ||||+|||||||||++|+|+|||||+||+|+|++ ++||||+||||||||
T Consensus 193 p~i~~~~~~vDa~~~~lv~~P~~fDVivt~NlfGDILSDlaa~l~GglGl~psanig~~--~a~FEp~HGSAPdiA---- 266 (330)
T PRK14025 193 PDIKAEDYYVDAMNMYIITRPQTFDVVVTSNLFGDILSDGAAGLVGGLGLAPSANIGDK--YGLFEPVHGSAPDIA---- 266 (330)
T ss_pred CCeEEEeeeHHHHHHHHhcCcccCcEEEEcCcccchhhHHHHHhcCCCCcccceeeCCC--cceeEcCCCCchhhC----
Confidence 999999999999999999999999 9999999999999999999999999999999976 489999999999997
Q ss_pred CCCCCCCCccccC
Q 019837 323 KDDQGSCTYYPWI 335 (335)
Q Consensus 323 aGk~~~aNP~a~I 335 (335)
|||+ |||+|||
T Consensus 267 -Gk~i-ANP~a~I 277 (330)
T PRK14025 267 -GKGI-ANPTATI 277 (330)
T ss_pred -CCCC-cCcHHHH
Confidence 6666 9999986
No 10
>PRK08194 tartrate dehydrogenase; Provisional
Probab=100.00 E-value=3.3e-93 Score=692.58 Aligned_cols=282 Identities=16% Similarity=0.129 Sum_probs=245.3
Q ss_pred ccEEEECCCCchHHHHHHHHHHHhcC-----CCceEEEEEecchhhhhccCCcccHHHHHHHHhcCeeeecCCCCCCcch
Q 019837 10 NPIVEMDGDEMTRVFWKSIKDKLIFP-----FLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEAR 84 (335)
Q Consensus 10 ~~I~vipGDGIGpEv~~~~~~~~~~~-----~~~i~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~lkg~~~~p~~~~ 84 (335)
++|+||||||||||||+++++++.+. +++|+|+++++|.+++++||++||++|+++||++|++||||+++|....
T Consensus 4 ~~I~vipGDGIGpEV~~~a~~vl~a~~~~~~~~~~e~~~~~~G~~~~~~~G~~lp~~tl~~~k~~dail~G~vg~p~~~~ 83 (352)
T PRK08194 4 FKIAVIPGDGVGKEVVPAAVRVLKAVAEVHGGLKFEFTEFPWSCEYYLEHGEMMPEDGLEQLKQFDAIFLGAVGNPKLVP 83 (352)
T ss_pred eEEEEECCCCchHHHHHHHHHHHHHHHhhccCCceEEEEEcCcHHHHHHhCCCCCHHHHHHHHhCCEEEEcccCCCCcCC
Confidence 78999999999999999999766422 5899999999999999999999999999999999999999999984110
Q ss_pred hhHHHhhhcCCCcchhHhhhcCceEEeecccccCCCCCCCC----CCCCEEEEeeccCccccccceeeeCCCceeeeeec
Q 019837 85 VKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPG----WTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVP 160 (335)
Q Consensus 85 ~~~~~l~~~~~s~~~~LRk~ldlyanvRPv~~~~~~~~~~~----~~~divivREnteg~Y~g~e~~~~~~g~~~~~~~~ 160 (335)
. .....++++.|||+||||||+||+ +++|++.++ .++|+|||||||||+|+|.++... +|.
T Consensus 84 ~-----~~~~~~~~l~LR~~ldLyaNvRP~--k~~pg~~splk~~~~iD~vivREnteG~Y~g~~~~~~-~g~------- 148 (352)
T PRK08194 84 D-----HISLWGLLIKIRREFEQVINIRPA--KQLRGIKSPLANPKDFDLLVVRENSEGEYSEVGGRIH-RGE------- 148 (352)
T ss_pred C-----CCCchhhHHHHHHHcCCEEEEEee--ecCCCCCCCCCCCCCCCEEEEEeCCCccccCCCcccc-CCc-------
Confidence 0 011233489999999999999998 667766544 257999999999999999754321 110
Q ss_pred CCCCccchhhhccccCccceeeeeeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchhHHHHHHHHHHhhhhcc
Q 019837 161 EGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSK 240 (335)
Q Consensus 161 ~~g~~~~~~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r~k~Vt~v~KaNVl~~~~g~f~~~~~eva~~eY~~~ 240 (335)
. +.+..+++|||+++|||+|+||+||++|+++||++||+|||+.++++||++|+||| ++|
T Consensus 149 ----~------------~~a~~~~~~Tr~~~eRI~r~Af~~A~~r~~~Vt~v~KaNvl~~t~~lf~~~~~eva-~~y--- 208 (352)
T PRK08194 149 ----D------------EIAIQNAVFTRKGTERAMRYAFELAAKRRKHVTSATKSNGIVHSMPFWDEVFQEVG-KDY--- 208 (352)
T ss_pred ----c------------ceEEEEEEeeHHHHHHHHHHHHHHHHHcCCcEEEEeCcchhhhhHHHHHHHHHHHH-hhC---
Confidence 0 13556789999999999999999999998889999999999999999999999999 599
Q ss_pred ccCCCceEeeeeHHHHHHHHHhCCCCc-EEEeCCchhhhHHhhhhhhcCccccccccccCCCCC-ceeeecCCCCccccc
Q 019837 241 FEAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGK-TIEAEAAHGTVTRHY 318 (335)
Q Consensus 241 ~~~p~V~~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaA~l~GslGlapSanig~~~~-~~~fEp~HGSAPdia 318 (335)
|+|+++|+|||++|||||++|++| ||||+|||||||||++|+|+|||||+||+|||+++. ++||||+||||||||
T Consensus 209 ---p~V~~~~~~vDa~~~~Lv~~P~~fDVIVt~NlfGDILSDlaa~l~GslGl~pSanig~~~~~~alFEp~HGSAPdiA 285 (352)
T PRK08194 209 ---PEIETDSQHIDALAAFFVTRPEEFDVIVASNLFGDILTDIGAAIMGSIGIAPAANINVNGKYPSMFEPVHGSAPDIA 285 (352)
T ss_pred ---CCceeeehhHHHHHHHHhhChhhCcEEEEccchHHHHhHHHHHhcCCccccceeeecCCCCcceEEECCCCCchhhC
Confidence 999999999999999999999999 999999999999999999999999999999996542 489999999999997
Q ss_pred ccccCCCCCCCCccccC
Q 019837 319 RVHQKDDQGSCTYYPWI 335 (335)
Q Consensus 319 gk~~aGk~~~aNP~a~I 335 (335)
|||+ |||+|||
T Consensus 286 -----Gk~i-ANP~a~I 296 (352)
T PRK08194 286 -----GKGI-ANPIGQI 296 (352)
T ss_pred -----CCCc-CCcHHHH
Confidence 5666 9999986
No 11
>PLN02329 3-isopropylmalate dehydrogenase
Probab=100.00 E-value=2.6e-93 Score=701.16 Aligned_cols=287 Identities=17% Similarity=0.115 Sum_probs=245.8
Q ss_pred cccccEEEECCCCchHHHHHHHHHHHhcC----CCceEEEEEecchhhhhccCCcccHHHHHHHHhcCeeeecCCCCCCc
Q 019837 7 KVANPIVEMDGDEMTRVFWKSIKDKLIFP----FLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDE 82 (335)
Q Consensus 7 ~m~~~I~vipGDGIGpEv~~~~~~~~~~~----~~~i~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~lkg~~~~p~~ 82 (335)
||.++|+||||||||||||+++++++.+. +++|+|+++++|++++++||++||++|+++|+++|++||||+++|..
T Consensus 44 ~~~~~IavipGDGIGPEV~~aa~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lP~~tl~~~~~~DaiL~Gavg~p~~ 123 (409)
T PLN02329 44 KKRYNIALLPGDGIGPEVISVAKNVLQKAGSLEGLEFDFQEMPVGGAALDLVGVPLPEETFTAAKQSDAILLGAIGGYKW 123 (409)
T ss_pred cceEEEEEECCCcccHHHHHHHHHHHHHHHhhcCCceEEEEEcCCHHHHHHhCCcCCHHHHHHHHHCCEEEECcccCCCC
Confidence 35689999999999999999999766422 58999999999999999999999999999999999999999998842
Q ss_pred chhhHHHhhhcCCCcchhHhhhcCceEEeecccccCCCCCCC--C------CCCCEEEEeeccCccccccceeeeCCCce
Q 019837 83 ARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIP--G------WTKPICIGRHAFGDQYRATDTVIQGPGKL 154 (335)
Q Consensus 83 ~~~~~~~l~~~~~s~~~~LRk~ldlyanvRPv~~~~~~~~~~--~------~~~divivREnteg~Y~g~e~~~~~~g~~ 154 (335)
... ...+ ...+++++|||+||||||+||+ +++|++.. + .++|+|||||||||+|+|.++......
T Consensus 124 ~~~-~~~~--~~e~~ll~LRk~ldLyaNvRPv--r~~pg~~~~splk~~~~~~iD~vIVREnTEG~Y~G~~~~~~~~~-- 196 (409)
T PLN02329 124 DKN-EKHL--RPEMALFYLRRDLKVFANLRPA--TVLPQLVDASTLKKEVAEGVDMMIVRELTGGIYFGEPRGITINE-- 196 (409)
T ss_pred CCC-cccc--cccccHHHHHHHcCCeEeeeee--eccCCCCCcCcccccccCCceEEEEEECCCCeecCCCcceeccc--
Confidence 100 0000 1125689999999999999998 56665442 1 257999999999999999763211000
Q ss_pred eeeeecCCCCccchhhhccccCccceeeeeeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchhHHHHHHHHHH
Q 019837 155 KLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYE 234 (335)
Q Consensus 155 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r~k~Vt~v~KaNVl~~~~g~f~~~~~eva~ 234 (335)
.+ ++.+.++++|||.++|||+|+||+||++|+++||++||+|||+ ++++|+++|+|||
T Consensus 197 -------~~-------------~~~a~~~~~iTr~~~eRI~r~AFe~A~~r~~kVT~v~KaNVl~-t~~lf~~~~~evA- 254 (409)
T PLN02329 197 -------NG-------------EEVGVSTEIYAAHEIDRIARVAFETARKRRGKLCSVDKANVLD-ASILWRKRVTALA- 254 (409)
T ss_pred -------CC-------------ceeEEEeEEecHHHHHHHHHHHHHHHHHcCCeEEEEECCCCcc-chHHHHHHHHHHH-
Confidence 00 0134557899999999999999999999988999999999999 9999999999999
Q ss_pred hhhhccccCCCceEeeeeHHHHHHHHHhCCCCc-EEEeCCchhhhHHhhhhhhcCccccccccccCCCCCceeeecCCCC
Q 019837 235 ANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGT 313 (335)
Q Consensus 235 ~eY~~~~~~p~V~~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaA~l~GslGlapSanig~~~~~~~fEp~HGS 313 (335)
++| |+|+++++|||++|||||++|++| ||||+|||||||||++|+|+|||||+||||||+++ ++||||+|||
T Consensus 255 ~ey------PdV~~~~~~VDa~a~~LV~~P~~FDVIVt~NLfGDILSDlaa~l~GglGlaPSanig~~~-~a~FEpvHGS 327 (409)
T PLN02329 255 SEY------PDVELSHMYVDNAAMQLIRDPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLGESG-PGLFEPIHGS 327 (409)
T ss_pred hhC------CCcccchhHHHHHHHHHhcCchhCCEEEEcCcccccccHHHHHhcCCcccCceeecCCCC-ceeeeccCCC
Confidence 599 999999999999999999999999 99999999999999999999999999999999876 5899999999
Q ss_pred cccccccccCCCCCCCCccccC
Q 019837 314 VTRHYRVHQKDDQGSCTYYPWI 335 (335)
Q Consensus 314 APdiagk~~aGk~~~aNP~a~I 335 (335)
||||| |||+ |||+|||
T Consensus 328 APdIA-----Gk~i-ANP~A~I 343 (409)
T PLN02329 328 APDIA-----GQDK-ANPLATI 343 (409)
T ss_pred chhhc-----CCcc-cChHHHH
Confidence 99997 5666 9999986
No 12
>TIGR02089 TTC tartrate dehydrogenase. Tartrate dehydrogenase catalyzes the oxidation of both meso- and (+)-tartrate as well as a D-malate. These enzymes are closely related to the 3-isopropylmalate and isohomocitrate dehydrogenases found in TIGR00169 and TIGR02088, respectively.
Probab=100.00 E-value=1.3e-92 Score=689.01 Aligned_cols=283 Identities=18% Similarity=0.164 Sum_probs=245.6
Q ss_pred ccEEEECCCCchHHHHHHHHHHHhcC-----CCceEEEEEecchhhhhccCCcccHHHHHHHHhcCeeeecCCCCCCcch
Q 019837 10 NPIVEMDGDEMTRVFWKSIKDKLIFP-----FLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEAR 84 (335)
Q Consensus 10 ~~I~vipGDGIGpEv~~~~~~~~~~~-----~~~i~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~lkg~~~~p~~~~ 84 (335)
++|++|||||||||||+++++++.+. +++|+|+++++|++++++||+++|++|+++|+++|++||||+++|....
T Consensus 4 ~~I~vipGDGIGpEV~~aa~~Vl~a~~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~k~~da~L~G~vg~p~~~~ 83 (352)
T TIGR02089 4 YRIAAIPGDGIGKEVVAAALQVLEAAAKRHGGFSLHFTEFPWSCDYYKEHGKMMPEDGLEKLKKFDAIFLGAVGWPALVP 83 (352)
T ss_pred eEEEEECCCcccHHHHHHHHHHHHHHHhhcCCcceEEEEECCcHHHHHHhCCCCCHHHHHHHHhCCEEEEecccCCCCCC
Confidence 78999999999999999999766422 4899999999999999999999999999999999999999999984211
Q ss_pred hhHHHhhhcCCCcchhHhhhcCceEEeecccccCCCCCCCC------CCCCEEEEeeccCccccccceeeeCCCceeeee
Q 019837 85 VKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPG------WTKPICIGRHAFGDQYRATDTVIQGPGKLKLVF 158 (335)
Q Consensus 85 ~~~~~l~~~~~s~~~~LRk~ldlyanvRPv~~~~~~~~~~~------~~~divivREnteg~Y~g~e~~~~~~g~~~~~~ 158 (335)
. ..+..++|+.|||+||||||+||+ +++|++.++ .++|+|||||||||+|+|.++.+. +|+
T Consensus 84 ~-----~~~~~~~~l~LRk~ldLyaNvRP~--~~~~g~~sp~k~~~~~~iD~vivREnteG~Y~G~~~~~~-~~~----- 150 (352)
T TIGR02089 84 D-----HISLWGLLLKIRREFDQYANVRPA--KLLPGVTSPLRNCGPGDFDFVVVRENSEGEYSGVGGRIH-RGT----- 150 (352)
T ss_pred C-----ccCchhhHHHHHHHcCCeEEEEEe--ecCCCCCCccccccCCCCCEEEEEecCCccccccccccc-CCc-----
Confidence 0 012345689999999999999998 566655433 257999999999999999754321 111
Q ss_pred ecCCCCccchhhhccccCccceeeeeeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchhHHHHHHHHHHhhhh
Q 019837 159 VPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWK 238 (335)
Q Consensus 159 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r~k~Vt~v~KaNVl~~~~g~f~~~~~eva~~eY~ 238 (335)
. ++.++.+++|||+++|||+|+||+||++|+++||++||+|||+.++++|+++|+||| ++|
T Consensus 151 ------~-----------~~~a~~~~~~tr~~~eRi~r~Af~~A~~rr~kVt~v~KaNvl~~t~~lf~~~~~eva-~~y- 211 (352)
T TIGR02089 151 ------D-----------EEVATQNAIFTRKGVERIMRFAFELAQKRRKHLTSATKSNGIRHSMPFWDEVFAEVA-AEY- 211 (352)
T ss_pred ------c-----------ceeEEEeEEecHHHHHHHHHHHHHHHHHcCCCEEEEeCCcchhhhhHHHHHHHHHHH-hhC-
Confidence 0 012455789999999999999999999998889999999999999999999999999 599
Q ss_pred ccccCCCceEeeeeHHHHHHHHHhCCCCc-EEEeCCchhhhHHhhhhhhcCccccccccccCCCCC-ceeeecCCCCccc
Q 019837 239 SKFEAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGK-TIEAEAAHGTVTR 316 (335)
Q Consensus 239 ~~~~~p~V~~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaA~l~GslGlapSanig~~~~-~~~fEp~HGSAPd 316 (335)
|+|+++|+|||++|||||++|++| ||||+|||||||||++|+++|||||+||+|||+++. ++||||+||||||
T Consensus 212 -----p~v~~~~~~vD~~~~~lv~~P~~fDVivt~NlfGDILSD~aa~l~GglGl~psanig~~~~~~a~fEp~HGSAPd 286 (352)
T TIGR02089 212 -----PDVEWDSYHIDALAARFVLKPETFDVIVASNLFGDILSDLGAALMGSLGVAPSANINPEGKFPSMFEPVHGSAPD 286 (352)
T ss_pred -----CCceEeeehHHHHHHHHhcChhhCcEEEecccchhhhhHHHHHhcCCccccceEEecCCCCcceeeecCCCCchh
Confidence 999999999999999999999999 999999999999999999999999999999997642 3899999999999
Q ss_pred ccccccCCCCCCCCccccC
Q 019837 317 HYRVHQKDDQGSCTYYPWI 335 (335)
Q Consensus 317 iagk~~aGk~~~aNP~a~I 335 (335)
|| |||+ |||+|||
T Consensus 287 iA-----Gk~i-ANP~a~I 299 (352)
T TIGR02089 287 IA-----GKGI-ANPIGAI 299 (352)
T ss_pred hc-----CCCc-cCcHHHH
Confidence 97 5676 9999986
No 13
>TIGR00169 leuB 3-isopropylmalate dehydrogenase. This model will not find all isopropylmalate dehydrogenases; the enzyme from Sulfolobus sp. strain 7 is more similar to mitochondrial NAD-dependent isocitrate dehydrogenases than to other known isopropylmalate dehydrogenases and was omitted to improve the specificity of the model. It scores below the cutoff and below some enzymes known not to be isopropylmalate dehydrogenase.
Probab=100.00 E-value=9.7e-92 Score=682.15 Aligned_cols=282 Identities=20% Similarity=0.158 Sum_probs=242.2
Q ss_pred cEEEECCCCchHHHHHHHHHHHhcC----CCceEEEEEecchhhhhccCCcccHHHHHHHHhcCeeeecCCCCCCcchhh
Q 019837 11 PIVEMDGDEMTRVFWKSIKDKLIFP----FLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVK 86 (335)
Q Consensus 11 ~I~vipGDGIGpEv~~~~~~~~~~~----~~~i~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~lkg~~~~p~~~~~~ 86 (335)
+|++|||||||||||+++++++.+. +++|+|+++++|++++++||++||++|+++|+++|++||||+++|......
T Consensus 1 ~i~vipGDGIGpEV~~aa~~vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~l~G~v~~p~~~~~~ 80 (349)
T TIGR00169 1 KIAVLPGDGIGPEITAEALKVLKAVAERFGLKFEFEEHLIGGAAIDATGQPLPEETLKACKEADAVLLGAVGGPKWDNLP 80 (349)
T ss_pred CEEEECCCCccHHHHHHHHHHHHHHHhhcCCceEEEEEeCCHHHHHHHCCCCCHHHHHHHHHCCEEEECcccCCCCCCCC
Confidence 5899999999999999999766422 689999999999999999999999999999999999999999988421000
Q ss_pred HHHhhhcCCCcchhHhhhcCceEEeecccccCCCCCCC--C------CCCCEEEEeeccCccccccceeeeCCCceeeee
Q 019837 87 EFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIP--G------WTKPICIGRHAFGDQYRATDTVIQGPGKLKLVF 158 (335)
Q Consensus 87 ~~~l~~~~~s~~~~LRk~ldlyanvRPv~~~~~~~~~~--~------~~~divivREnteg~Y~g~e~~~~~~g~~~~~~ 158 (335)
.. ...+.+ +++|||+||||||+||+ |++|++.. + .++|+|||||||||+|+|+++.....+
T Consensus 81 -~~-~~~~~~-~~~LR~~ldlyanvRP~--r~~~g~~~~~p~~~~~~~~iD~vivREntEG~Y~g~~~~~~~~~------ 149 (349)
T TIGR00169 81 -RD-QRPEQG-LLKLRKSLDLFANLRPA--KVFPSLEDLSPLKEEIAKGVDFVVVRELTGGIYFGEPKGRFGAG------ 149 (349)
T ss_pred -cc-ccchhh-HHHHHHHcCCeEEEEEe--eccCCCCccCCCcccccCCceEEEEeeccCCeecCCCccccCCC------
Confidence 00 000223 89999999999999998 56666532 1 257999999999999999864211100
Q ss_pred ecCCCCccchhhhccccCccceeeeeeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchhHHHHHHHHHHhhhh
Q 019837 159 VPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWK 238 (335)
Q Consensus 159 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r~k~Vt~v~KaNVl~~~~g~f~~~~~eva~~eY~ 238 (335)
. . +.+..+++|||+++|||+|+||+||++|+++||++||+|||+ ++|+|+++|+||+ ++|
T Consensus 150 ----~-~------------~~a~~~~~~Tr~~~eRI~r~AF~~A~~r~~~Vt~v~KaNvlk-t~glf~~~~~eva-~~y- 209 (349)
T TIGR00169 150 ----G-E------------GEAWDTEVYTKPEIERIARVAFEMARKRRKKVTSVDKANVLE-SSRLWRKTVEEIA-KEY- 209 (349)
T ss_pred ----C-c------------ceEEEEEEeeHHHHHHHHHHHHHHHHHcCCcEEEEECCcccc-hhHHHHHHHHHHH-hhC-
Confidence 0 0 124457899999999999999999999988999999999999 8999999999999 599
Q ss_pred ccccCCCceEeeeeHHHHHHHHHhCCCCc-EEEeCCchhhhHHhhhhhhcCccccccccccCCCCCceeeecCCCCcccc
Q 019837 239 SKFEAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRH 317 (335)
Q Consensus 239 ~~~~~p~V~~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaA~l~GslGlapSanig~~~~~~~fEp~HGSAPdi 317 (335)
|+|+++++|||+++||||++|++| ||||+|||||||||++|+++|||||+||+|+|+++ ++||||+|||||||
T Consensus 210 -----P~I~~~~~~vDa~~~~Lv~~P~~fDViv~~NlfGDILSDlaa~l~GglGlapSanig~~~-~a~FEp~HGSAPdi 283 (349)
T TIGR00169 210 -----PDVELEHQYIDNAAMQLVKSPTQFDVVVTGNIFGDILSDEASVIPGSLGMLPSASLGSDG-FGLFEPVHGSAPDI 283 (349)
T ss_pred -----CCceEEeeeHHHHHHHHHhCccCceEEEEcCcccchhhHHHHHhcCCCCCCceEEECCCC-CEEEECCCCChhHh
Confidence 999999999999999999999999 99999999999999999999999999999999876 59999999999999
Q ss_pred cccccCCCCCCCCccccC
Q 019837 318 YRVHQKDDQGSCTYYPWI 335 (335)
Q Consensus 318 agk~~aGk~~~aNP~a~I 335 (335)
| |||+ |||+|||
T Consensus 284 A-----Gk~i-ANP~a~I 295 (349)
T TIGR00169 284 A-----GKGI-ANPIAQI 295 (349)
T ss_pred c-----CCCC-CChHHHH
Confidence 7 5666 9999986
No 14
>PRK06451 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=1.1e-91 Score=692.32 Aligned_cols=296 Identities=20% Similarity=0.195 Sum_probs=250.6
Q ss_pred EEEECCCCchHHHHHHHHHHHhcC-------CCceEEEEEecchhhhhccCCcccHHHHHHHHhcCeeeecCCCCCCcch
Q 019837 12 IVEMDGDEMTRVFWKSIKDKLIFP-------FLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEAR 84 (335)
Q Consensus 12 I~vipGDGIGpEv~~~~~~~~~~~-------~~~i~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~lkg~~~~p~~~~ 84 (335)
|++|||||||||||+++++++.+. +++|+|+++++|+++|++||++||++++++|+++|++||||+++|..
T Consensus 26 I~vipGDGIGpEV~~aa~~Vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~etl~~ik~~daiL~GavgtP~~-- 103 (412)
T PRK06451 26 ILYVEGDGIGPEITHAAMKVINKAVEKAYGSDREIKWVEVLAGDKAEKLTGNRFPKESEELIEKYRVLLKGPLETPIG-- 103 (412)
T ss_pred EEEecCCcccHHHHHHHHHHHHHHHHhccCCCCceEEEEEcCCHHHHHHhCCcCCHHHHHHHHHCCEEEECcccCCCC--
Confidence 999999999999999999766421 26899999999999999999999999999999999999999999843
Q ss_pred hhHHHhhhcCCCcchhHhhhcCceEEeecccccCCCCCCCCC----CCCEEEEeeccCccccccceeeeCCCcee-eeee
Q 019837 85 VKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGW----TKPICIGRHAFGDQYRATDTVIQGPGKLK-LVFV 159 (335)
Q Consensus 85 ~~~~~l~~~~~s~~~~LRk~ldlyanvRPv~~~~~~~~~~~~----~~divivREnteg~Y~g~e~~~~~~g~~~-~~~~ 159 (335)
.+|+|+|++|||+||||||+||+ |++|++.+++ ++|||||||||||+|+|+++.+..++..+ ..|.
T Consensus 104 -------~~~~s~~l~LRk~ldLyaNvRPv--k~~pgl~sp~~~~~~iD~vIvREnTeG~Y~g~~~~~~~~~~~~~~~~~ 174 (412)
T PRK06451 104 -------KGWKSINVAIRLMLDLYANIRPV--KYIPGIESPLKNPEKIDLIIFRENTDDLYRGIEYPYDSEEAKKIRDFL 174 (412)
T ss_pred -------cCCcChhHHHHHHcCCeEeecee--ecCCCCCCcccCcCCccEEEEEeccCCeeecccccccccccccccccc
Confidence 25889999999999999999998 6777765543 57999999999999999986532211100 0111
Q ss_pred cC-CCCccchhhhccccCccceeeeeeeCHHHHHHHHHHHHHHHHhCC-CCEEEEeCCCcccccchhHHHHHHHHHHhhh
Q 019837 160 PE-GKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKK-WPLYLSTKNTILKKYDGRFKDIFQEVYEANW 237 (335)
Q Consensus 160 ~~-~g~~~~~~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r~-k~Vt~v~KaNVl~~~~g~f~~~~~eva~~eY 237 (335)
.+ .+.. ... +.+..+++||+.+++||+|+||+||++|+ |+||++||+|||+.|+|+||++|+||++++|
T Consensus 175 ~~~~~~~--------~~~-~~a~~~~~~t~~~~eRIar~AF~~A~~r~~kkVt~v~KaNVlk~t~glf~~~~~eva~~ey 245 (412)
T PRK06451 175 RKELGVE--------VED-DTGIGIKLISKFKTQRIARMAIKYAIDHKRKKVTIMHKGNVMKYTEGAFREWAYEVALKEF 245 (412)
T ss_pred ccccccc--------ccc-ceecceeeeeHHHHHHHHHHHHHHHHhcCCCcEEEEECCCccccchhhHHHHHHHHHHHhC
Confidence 11 0000 000 12345689999999999999999999996 6899999999999999999999999995578
Q ss_pred hc--------------cccCCCceEeeeeHHHHHHHHHhCCCCc-EEEeCCchhhhHHhhhhhhcCccccccccccCCCC
Q 019837 238 KS--------------KFEAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDG 302 (335)
Q Consensus 238 ~~--------------~~~~p~V~~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaA~l~GslGlapSanig~~~ 302 (335)
.+ +|.+|+|+++|+|||++|||||++|++| ||||+|||||||||+||+|+|||||+||||+|++.
T Consensus 246 pd~~~~~~~~~~~y~~~~~~~~I~~~~~~vDa~~~~Lv~~P~~FDVivt~NlfGDILSDlaa~l~GglGl~pSanig~~~ 325 (412)
T PRK06451 246 RDYVVTEEEVTKNYNGVPPSGKVIINDRIADNMFQQIIIRPDEYDIILAPNVNGDYISDAAGALVGNIGMLGGANIGDTG 325 (412)
T ss_pred CcccccccchhhccccccccCceEEEeeeHHHHHHHHhcCcccCcEEEEcCcccchhhHHHHHhcCchhhcceeeeCCCC
Confidence 43 5666679999999999999999999999 99999999999999999999999999999999764
Q ss_pred CceeeecCCCCcccccccccCCCCCCCCccccC
Q 019837 303 KTIEAEAAHGTVTRHYRVHQKDDQGSCTYYPWI 335 (335)
Q Consensus 303 ~~~~fEp~HGSAPdiagk~~aGk~~~aNP~a~I 335 (335)
+||||+|||||||| |||+ |||+|||
T Consensus 326 --alFEpvHGSAPdiA-----Gk~i-ANP~a~I 350 (412)
T PRK06451 326 --GMFEAIHGTAPKYA-----GKNV-ANPTGII 350 (412)
T ss_pred --ceeECCCCCccccC-----CCCC-cCcHHHH
Confidence 89999999999997 6676 9999986
No 15
>PRK09222 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=1e-91 Score=700.93 Aligned_cols=275 Identities=21% Similarity=0.188 Sum_probs=249.4
Q ss_pred ccccEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecchhhhhccC-CcccHHHHHHHHhcCeeeecCCCCCCcchhh
Q 019837 8 VANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATD-DKVTVESAEATLKYNVAIKCATITPDEARVK 86 (335)
Q Consensus 8 m~~~I~vipGDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~G-~~lp~~tl~~~~~~da~lkg~~~~p~~~~~~ 86 (335)
|.++|+||||||||||||+++++++.+.+++|+|+++++|.++|+++| +++|++++++|+++|++||||+++|..
T Consensus 3 ~~~~I~vipGDGIGPEV~~a~~~VL~a~~~~i~~~~~~~G~~~~~~~g~~~lp~~~~~~i~~~da~LkG~i~tP~~---- 78 (482)
T PRK09222 3 EKTPITVAYGDGIGPEIMEAVLKILEAAGAPLEIETIEIGEKVYKKGWTSGISPSAWESIRRTKVLLKAPITTPQG---- 78 (482)
T ss_pred CcceEEEECCCcccHHHHHHHHHHHHhcCCceEEEEEcCCHHHHHhcCCCCCCHHHHHHHHHCCEEEEccccCCCc----
Confidence 448999999999999999999987766689999999999999999987 799999999999999999999999943
Q ss_pred HHHhhhcCCCcchhHhhhcCceEEeecccccCC-CCCCCCC-CCCEEEEeeccCccccccceeeeCCCceeeeeecCCCC
Q 019837 87 EFVLKQMWKSPNGTIRNILNGTVFREPIICKNV-PRLIPGW-TKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKD 164 (335)
Q Consensus 87 ~~~l~~~~~s~~~~LRk~ldlyanvRPv~~~~~-~~~~~~~-~~divivREnteg~Y~g~e~~~~~~g~~~~~~~~~~g~ 164 (335)
.+++|+|++|||+||||||+||+ +++ |++.+.+ ++|+|||||||||+|+|+|++.. ++
T Consensus 79 -----~~~~s~~~~LRk~ldLYaNvRP~--r~~~pgv~~~~~~iD~vIVRENtEG~Y~G~e~~~~-~~------------ 138 (482)
T PRK09222 79 -----GGYKSLNVTLRKTLGLYANVRPC--VSYHPFVETKHPNLDVVIIRENEEDLYAGIEHRQT-PD------------ 138 (482)
T ss_pred -----cCccchHHHHHHHcCCeEEeeeE--EecCCCCCCCCCCcCEEEEEeccCCeeccceeecC-CC------------
Confidence 24788899999999999999997 677 7766543 57999999999999999876521 11
Q ss_pred ccchhhhccccCccceeeeeeeCHHHHHHHHHHHHHHHHhCC-CCEEEEeCCCcccccchhHHHHHHHHHHhhhhccccC
Q 019837 165 EKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKK-WPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEA 243 (335)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r~-k~Vt~v~KaNVl~~~~g~f~~~~~eva~~eY~~~~~~ 243 (335)
.+..+++|||+++|||+|+||+||++|+ |+||++||+|||+.|||+|+++|+||| ++|
T Consensus 139 --------------~~~~~k~iTr~~~eRI~r~AFe~A~~r~rkkVt~v~KaNVmk~tdglf~~v~~eva-~ey------ 197 (482)
T PRK09222 139 --------------VYQCLKLISRPGSEKIIRYAFEYARANGRKKVTCLTKDNIMKLTDGLFHKVFDEIA-KEY------ 197 (482)
T ss_pred --------------eeeEeeccCHHHHHHHHHHHHHHHHhcCCCeEEEEECCCcccccchHHHHHHHHHH-hhC------
Confidence 1334689999999999999999999997 679999999999999999999999999 599
Q ss_pred CCceEeeeeHHHHHHHHHhCCCCc-EEEeCCchhhhHHhhhhhhcCccccccccccCCCCCceeeecCCCCccccccccc
Q 019837 244 AGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQ 322 (335)
Q Consensus 244 p~V~~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaA~l~GslGlapSanig~~~~~~~fEp~HGSAPdiagk~~ 322 (335)
|+|+++|+|||++||+|+++|++| ||||+|||||||||++|+|+||+||+||+|||++ ++||||+||||||||
T Consensus 198 PdI~~~~~~VDa~a~~Lv~~P~~FDVIVt~NLfGDILSDlaa~l~GslGlapSanig~~--~amFEpvHGSAPdIA---- 271 (482)
T PRK09222 198 PDIEAEHYIVDIGAARLATNPENFDVIVTPNLYGDILSDIAAEISGSVGLAGSANIGEE--YAMFEAVHGSAPDIA---- 271 (482)
T ss_pred CCceEeeeeHHHHHHHHhcCcccceEEEEcccccchhhHHHHHhcCCcccccceecCCC--ceeeECCCCCchhhc----
Confidence 999999999999999999999999 9999999999999999999999999999999976 489999999999997
Q ss_pred CCCCCCCCccccC
Q 019837 323 KDDQGSCTYYPWI 335 (335)
Q Consensus 323 aGk~~~aNP~a~I 335 (335)
|||+ |||+|||
T Consensus 272 -Gk~i-ANP~a~I 282 (482)
T PRK09222 272 -GKNI-ANPSGLL 282 (482)
T ss_pred -CCCc-cCcHHHH
Confidence 6676 9999986
No 16
>PRK00772 3-isopropylmalate dehydrogenase; Provisional
Probab=100.00 E-value=3.8e-91 Score=679.47 Aligned_cols=285 Identities=19% Similarity=0.128 Sum_probs=246.2
Q ss_pred ccccEEEECCCCchHHHHHHHHHHHhcC----CCceEEEEEecchhhhhccCCcccHHHHHHHHhcCeeeecCCCCCCcc
Q 019837 8 VANPIVEMDGDEMTRVFWKSIKDKLIFP----FLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEA 83 (335)
Q Consensus 8 m~~~I~vipGDGIGpEv~~~~~~~~~~~----~~~i~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~lkg~~~~p~~~ 83 (335)
|.++|+||||||||||||+++++++.+. +++|+|+++++|.+++++||++||++++++|+++|++||||+++|...
T Consensus 1 ~~~~I~vipGDGIGpEV~~aa~~vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~L~Gav~~p~~~ 80 (358)
T PRK00772 1 MTYKIAVLPGDGIGPEVMAEAVKVLDAVAEKFGFDFEFEEALVGGAAIDAHGVPLPEETLEACRAADAVLLGAVGGPKWD 80 (358)
T ss_pred CceEEEEECCCcccHHHHHHHHHHHHHHHhhcCCceEEEEecCcHHHHHHHCCCCCHHHHHHHHHCCEEEECccCCCCCC
Confidence 3478999999999999999999766422 689999999999999999999999999999999999999999998421
Q ss_pred hhhHHHhhhcCCCcchhHhhhcCceEEeecccccCCCCCCC--CC------CCCEEEEeeccCccccccceeeeCCCcee
Q 019837 84 RVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIP--GW------TKPICIGRHAFGDQYRATDTVIQGPGKLK 155 (335)
Q Consensus 84 ~~~~~~l~~~~~s~~~~LRk~ldlyanvRPv~~~~~~~~~~--~~------~~divivREnteg~Y~g~e~~~~~~g~~~ 155 (335)
.++ ....+..| |++|||+||||||+||+ |++|++.. +. ++|+|||||||||+|+|.++... .+.
T Consensus 81 ~~~--~~~~~~~~-~~~LR~~ldlyanvRP~--r~~pg~~~~~plk~~~~~~iD~vivREntEG~Y~g~~~~~~-~~~-- 152 (358)
T PRK00772 81 NLP--PDVRPERG-LLALRKELGLFANLRPA--KLYPGLADASPLKPEIVAGLDILIVRELTGGIYFGEPRGRE-GLG-- 152 (358)
T ss_pred CCC--ccCCChhh-HHHHHHHcCCeEEEeEe--ecCCCCCCcCCCcccccCCccEEEEecccCCeecCCccccc-CCC--
Confidence 100 00012345 89999999999999998 66666543 21 58999999999999999865421 110
Q ss_pred eeeecCCCCccchhhhccccCccceeeeeeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchhHHHHHHHHHHh
Q 019837 156 LVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEA 235 (335)
Q Consensus 156 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r~k~Vt~v~KaNVl~~~~g~f~~~~~eva~~ 235 (335)
+ ++.+..+++|||++++||+|+||+||++|+++||++||+|||+ ++|+|+++|+||| +
T Consensus 153 -------~-------------~~~a~~~~~iTr~~~~Ri~r~Af~~A~~r~~~Vt~v~KaNvl~-~~glf~~~~~eva-~ 210 (358)
T PRK00772 153 -------G-------------EERAFDTMVYTREEIERIARVAFELARKRRKKVTSVDKANVLE-SSRLWREVVTEVA-K 210 (358)
T ss_pred -------C-------------ceeEEEEEEeeHHHHHHHHHHHHHHHHHcCCcEEEEECccccc-cchHHHHHHHHHH-h
Confidence 0 0124457899999999999999999999989999999999999 8999999999999 5
Q ss_pred hhhccccCCCceEeeeeHHHHHHHHHhCCCCc-EEEeCCchhhhHHhhhhhhcCccccccccccCCCCCceeeecCCCCc
Q 019837 236 NWKSKFEAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTV 314 (335)
Q Consensus 236 eY~~~~~~p~V~~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaA~l~GslGlapSanig~~~~~~~fEp~HGSA 314 (335)
+| |+|++++++||+++|+||++|++| ||||+|||||||||++|+++|||||+||+|||+++ ++||||+||||
T Consensus 211 ey------p~i~~~~~~vDa~~~~lv~~P~~fDViv~~NlfGDIlSDlaa~l~GglGl~psanig~~~-~a~FEp~HGSA 283 (358)
T PRK00772 211 EY------PDVELSHMYVDNAAMQLVRNPKQFDVIVTENLFGDILSDEAAMLTGSLGMLPSASLGESG-PGLYEPIHGSA 283 (358)
T ss_pred HC------CCceEEEEeHHHHHHHHhhCcccCeEEeecCcccccccHHHHHhcCCCCCCcceEeCCCC-ceeeecCCCch
Confidence 99 999999999999999999999999 99999999999999999999999999999999876 59999999999
Q ss_pred ccccccccCCCCCCCCccccC
Q 019837 315 TRHYRVHQKDDQGSCTYYPWI 335 (335)
Q Consensus 315 Pdiagk~~aGk~~~aNP~a~I 335 (335)
|||| ||++ |||+|||
T Consensus 284 pdiA-----Gk~~-aNP~a~I 298 (358)
T PRK00772 284 PDIA-----GKGI-ANPIATI 298 (358)
T ss_pred hhhc-----CCCC-cCCHHHH
Confidence 9997 5566 9999986
No 17
>TIGR02924 ICDH_alpha isocitrate dehydrogenase. This family of mainly alphaproteobacterial enzymes is a member of the isocitrate/isopropylmalate dehydrogenase superfamily described by pfam00180. Every member of the seed of this model appears to have a TCA cycle lacking only a determined isocitrate dehydrogenase. The precise identity of the cofactor (NADH -- 1.1.1.41 vs. NADPH -- 1.1.1.42) is unclear.
Probab=100.00 E-value=3.8e-91 Score=694.62 Aligned_cols=272 Identities=22% Similarity=0.201 Sum_probs=246.2
Q ss_pred cEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecchhhhhccC-CcccHHHHHHHHhcCeeeecCCCCCCcchhhHHH
Q 019837 11 PIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATD-DKVTVESAEATLKYNVAIKCATITPDEARVKEFV 89 (335)
Q Consensus 11 ~I~vipGDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~G-~~lp~~tl~~~~~~da~lkg~~~~p~~~~~~~~~ 89 (335)
+|+||||||||||||+++++++.+.+++|+|+++++|+++|+++| +++|++++++|+++|++||||+++|..
T Consensus 2 ~I~vipGDGIGPEV~~aa~~VL~a~~~~i~~~~~~~G~~~~~~~gg~~lpdetl~~i~~~da~LkG~i~tp~~------- 74 (473)
T TIGR02924 2 PITVAYGDGIGPEIMEAVLLILKEAEAPIDIETIEIGEKVYKKGWPSGISPSSWESIRRTKVLLKAPITTPQG------- 74 (473)
T ss_pred eEEEEcCCcccHHHHHHHHHHHHhcCCCeEEEEEcCCHHHHHhhCCCCCCHHHHHHHHHCCEEEECcccCCCc-------
Confidence 699999999999999999977766788999999999999999995 899999999999999999999999843
Q ss_pred hhhcCCCcchhHhhhcCceEEeecccccCC-CCCCCCC-CCCEEEEeeccCccccccceeeeCCCceeeeeecCCCCccc
Q 019837 90 LKQMWKSPNGTIRNILNGTVFREPIICKNV-PRLIPGW-TKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKT 167 (335)
Q Consensus 90 l~~~~~s~~~~LRk~ldlyanvRPv~~~~~-~~~~~~~-~~divivREnteg~Y~g~e~~~~~~g~~~~~~~~~~g~~~~ 167 (335)
.+++|+|++|||.||||||+||+ +++ |++.+.. ++|+|||||||||+|+|+|++.. ++
T Consensus 75 --~~~~s~~~~LRk~ldLYANvRPv--~~~~p~~~~~~~~vDiVIVRENtEGlY~G~e~~~~-~~--------------- 134 (473)
T TIGR02924 75 --GGHKSLNVTLRKTLGLYANIRPC--VSYHPFIETKSPNLNIVIVRENEEDLYTGIEYRQT-PD--------------- 134 (473)
T ss_pred --cCcccHHHHHHHHcCCeEEEEEe--eccCCCCCCccCCcCEEEEEeccCceecCceeecc-CC---------------
Confidence 24678899999999999999997 677 5555443 57999999999999999886531 11
Q ss_pred hhhhccccCccceeeeeeeCHHHHHHHHHHHHHHHHhCC-CCEEEEeCCCcccccchhHHHHHHHHHHhhhhccccCCCc
Q 019837 168 ELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKK-WPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGI 246 (335)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r~-k~Vt~v~KaNVl~~~~g~f~~~~~eva~~eY~~~~~~p~V 246 (335)
.+..+++|||.++|||+|+||+||++|+ |+||++||+|||+.|||+|+++|+||| ++| |+|
T Consensus 135 -----------~~~~~kviTr~g~eRI~r~AFe~A~~r~rkkVT~v~KaNVmk~tdglf~e~~~eva-~ey------PdI 196 (473)
T TIGR02924 135 -----------TYECTKLITRSGSEKICRYAFEYARKHNRKKVTCLTKDNIMKMTDGIFHKIFDKIA-AEY------PDI 196 (473)
T ss_pred -----------hheEeEecCHHHHHHHHHHHHHHHHhcCCCeEEEEECCccccccchhHHHHHHHHH-hhC------CCc
Confidence 1223689999999999999999999996 679999999999999999999999999 599 999
Q ss_pred eEeeeeHHHHHHHHHhCCCCc-EEEeCCchhhhHHhhhhhhcCccccccccccCCCCCceeeecCCCCcccccccccCCC
Q 019837 247 WYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKDD 325 (335)
Q Consensus 247 ~~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaA~l~GslGlapSanig~~~~~~~fEp~HGSAPdiagk~~aGk 325 (335)
+++|+|||+++|+|+++|++| ||||+|||||||||++|+++|||||+||+|+|++ ++||||+|||||||| ||
T Consensus 197 ~~e~~~VDa~a~~Lv~~P~~FDVIVt~NLfGDILSDlaA~l~GslGlapSaNiG~~--~amFEpvHGSAPdIA-----Gk 269 (473)
T TIGR02924 197 ESEHYIVDIGMARLATNPENFDVIVTPNLYGDILSDVAAEISGSVGLAGSANIGEE--YAMFEAVHGSAPDIA-----GQ 269 (473)
T ss_pred EEeeHHHHHHHHHHhhCcccceEEEEccccchhhhHHHHHhcCCcCcccceecCCC--cceeecCCCchhhhC-----CC
Confidence 999999999999999999999 9999999999999999999999999999999976 489999999999997 66
Q ss_pred CCCCCccccC
Q 019837 326 QGSCTYYPWI 335 (335)
Q Consensus 326 ~~~aNP~a~I 335 (335)
|+ |||+|||
T Consensus 270 ~i-ANP~a~I 278 (473)
T TIGR02924 270 NI-ANPSGLL 278 (473)
T ss_pred Cc-cChHHHH
Confidence 76 9999986
No 18
>PRK07006 isocitrate dehydrogenase; Reviewed
Probab=100.00 E-value=1.2e-90 Score=685.51 Aligned_cols=299 Identities=20% Similarity=0.171 Sum_probs=250.9
Q ss_pred EEEECCCCchHHHHHHHHHHHhcC-------CCceEEEEEecchhhhhccCC--cccHHHHHHHHhcCeeeecCCCCCCc
Q 019837 12 IVEMDGDEMTRVFWKSIKDKLIFP-------FLELDIKYFDLGLPNRDATDD--KVTVESAEATLKYNVAIKCATITPDE 82 (335)
Q Consensus 12 I~vipGDGIGpEv~~~~~~~~~~~-------~~~i~~~~~~~G~~~~~~~G~--~lp~~tl~~~~~~da~lkg~~~~p~~ 82 (335)
|++|||||||||||+++++++.+. +++|+|+++++|.++|++||+ +||++|+++|+++|++||||+++|.+
T Consensus 22 I~vipGDGIGpEV~~aa~~vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~~~lp~~tl~~~~~~da~l~G~i~tp~~ 101 (409)
T PRK07006 22 IPFIEGDGIGPDITPAMLKVVDAAVEKAYKGERKISWMEIYAGEKATKVYGEDVWLPEETLDLIREYRVAIKGPLTTPVG 101 (409)
T ss_pred EEEeCCCcccHHHHHHHHHHHHHHHHhccCCCCceEEEEEecCHHHHHhhCCcCCCCHHHHHHHHHCCEEEECcccCCCC
Confidence 999999999999999999766421 158999999999999999999 99999999999999999999999843
Q ss_pred chhhHHHhhhcCCCcchhHhhhcCceEEeecccccCCCCCCCCC----CCCEEEEeeccCccccccceeeeCCC-ceeee
Q 019837 83 ARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGW----TKPICIGRHAFGDQYRATDTVIQGPG-KLKLV 157 (335)
Q Consensus 83 ~~~~~~~l~~~~~s~~~~LRk~ldlyanvRPv~~~~~~~~~~~~----~~divivREnteg~Y~g~e~~~~~~g-~~~~~ 157 (335)
.+++|+|+.||++||||||+||+ +++|++.+++ ++|||||||||||+|+|.++.....+ .....
T Consensus 102 ---------~~~~s~~l~LR~~ldLyaNvRPv--k~~pgl~~plk~~~~iD~vIvREnteG~Y~g~~~~~~~~~~~~~~~ 170 (409)
T PRK07006 102 ---------GGIRSLNVALRQELDLYVCLRPV--RYFKGVPSPVKRPEDTDMVIFRENSEDIYAGIEWKAGSAEAKKVIK 170 (409)
T ss_pred ---------cCccChHHHHHHHcCCEEEEEEE--ecCCCCCCCCCCCCCCCEEEEEeccCCeecccccccCCcccceeee
Confidence 13678899999999999999998 5566654432 57999999999999999875422111 00011
Q ss_pred eecCC-CCccchhhhccccCccceeeeeeeCHHHHHHHHHHHHHHHHhCC-CCEEEEeCCCcccccchhHHHHHHHHHHh
Q 019837 158 FVPEG-KDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKK-WPLYLSTKNTILKKYDGRFKDIFQEVYEA 235 (335)
Q Consensus 158 ~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r~-k~Vt~v~KaNVl~~~~g~f~~~~~eva~~ 235 (335)
|.... +. +..+++. +.++.+++|||+++|||+|+||+||++|+ |+||++||+|||+.|+|+|++++.|||++
T Consensus 171 ~~~~~~~~-----~~~~~~~-~~a~~~~v~Tr~~~eRi~r~AFe~A~~r~rkkVt~v~KaNVlk~tdglf~~~~~eva~~ 244 (409)
T PRK07006 171 FLQEEMGV-----KKIRFPE-TSGIGIKPVSEEGTERLVRAAIEYAIDNDRKSVTLVHKGNIMKFTEGAFKDWGYQLAEE 244 (409)
T ss_pred ccccccCc-----ccccccc-cceEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECCCccccchHHHHHHHHHHHHH
Confidence 22110 10 1111221 12445789999999999999999999996 67999999999999999999988899965
Q ss_pred hhhccccC-------------CCceEeeeeHHHHHHHHHhCCCCc-EEEeCCchhhhHHhhhhhhcCccccccccccCCC
Q 019837 236 NWKSKFEA-------------AGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPD 301 (335)
Q Consensus 236 eY~~~~~~-------------p~V~~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaA~l~GslGlapSanig~~ 301 (335)
+|+++|.+ |+|+++|+|||++|||||++|++| ||||+|||||||||++|+|+|||||+||+|+|++
T Consensus 245 ey~~~~~~~~~~~~~~~~~~~p~v~~~~~~vDa~~~~lv~~P~~fDVIvt~NlfGDILSDlaa~l~GglGlapSanig~~ 324 (409)
T PRK07006 245 EFGDELIDGGPWDKIKNPETGKEIIVKDSIADAFLQQILLRPAEYDVIATMNLNGDYISDALAAQVGGIGIAPGANINDG 324 (409)
T ss_pred HhhhhhhccccccccccccCCCCceeehHHHHHHHHHHhhCcccCcEEEEcCcccchhhHHHHHhcCchhhcccceeCCC
Confidence 79888876 899999999999999999999999 9999999999999999999999999999999954
Q ss_pred CCceeeecCCCCcccccccccCCCCCCCCccccC
Q 019837 302 GKTIEAEAAHGTVTRHYRVHQKDDQGSCTYYPWI 335 (335)
Q Consensus 302 ~~~~~fEp~HGSAPdiagk~~aGk~~~aNP~a~I 335 (335)
++||||+|||||||| |||+ |||+|||
T Consensus 325 --~a~FEpvHGSAPdiA-----Gk~i-ANP~a~I 350 (409)
T PRK07006 325 --HAIFEATHGTAPKYA-----GLDK-VNPGSVI 350 (409)
T ss_pred --ceEEECCCCcchhhC-----CCCC-cChHHHH
Confidence 599999999999997 6676 9999986
No 19
>PLN00103 isocitrate dehydrogenase (NADP+); Provisional
Probab=100.00 E-value=1.7e-90 Score=681.30 Aligned_cols=308 Identities=84% Similarity=1.273 Sum_probs=258.3
Q ss_pred CCCccccccccEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecchhhhhccCCcccHHHHHHHHhcCeeeecCCCCC
Q 019837 1 MAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITP 80 (335)
Q Consensus 1 ~~~~~~~m~~~I~vipGDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~lkg~~~~p 80 (335)
||++||||+.|+++|||||||||+++++++++++++++|+|+++++|+++|++||+++|++++++|+++|++||||++||
T Consensus 1 ~~~~~~~~~~p~~~~~Gd~~~~~~~~~~~~~~~~~~~~i~~~~~d~G~~~~~~tg~~lp~e~le~~k~~da~lkGav~tp 80 (410)
T PLN00103 1 MAFEKIKVANPIVEMDGDEMTRVIWKSIKDKLIFPFLDLDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITP 80 (410)
T ss_pred CCcccccccCCeEEecCCcchHHHHHHHHHHHhcCCCCeEEEEEcCCHHHHHHhCCcCCHHHHHHHHHCCEEEECCccCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhhHHHhhhcCCCcchhHhhhcCceEEeecccccCCC----CCCCC----------------------CCCCEEEEe
Q 019837 81 DEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVP----RLIPG----------------------WTKPICIGR 134 (335)
Q Consensus 81 ~~~~~~~~~l~~~~~s~~~~LRk~ldlyanvRPv~~~~~~----~~~~~----------------------~~~divivR 134 (335)
...+..|.++...|+|+|++|||+||||||+||+.+|++| ++..+ .+.|+||||
T Consensus 81 ~~~~~~~~~~~~~~~s~n~~lRk~ldlyanvRP~~vk~~~~~~~g~~~~i~~~~~~~~~~~~~~d~v~~~~~~id~vivR 160 (410)
T PLN00103 81 DEARVKEFGLKQMWKSPNGTIRNILNGTVFREPIICKNIPRLVPGWTKPICIGRHAFGDQYRATDAVIKGPGKLKLVFVP 160 (410)
T ss_pred ccccccccCccccccCchHHHHHHcCCeEEecchhccccCccCCCCCCceeecccccccccccceeccCCCCceEEEEEe
Confidence 5322112223345899999999999999999994446776 44322 235789999
Q ss_pred eccCccccccceeeeCCCceeeeeecCCCCccchhhhccccCccceeeeeeeCHHHHHHHHHHHHHHHHhCCCCEEEEeC
Q 019837 135 HAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTK 214 (335)
Q Consensus 135 Enteg~Y~g~e~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r~k~Vt~v~K 214 (335)
|||||+| ++... .|.+. .+++...++|++++|||+|+||+||++|+++||++||
T Consensus 161 ENTEg~y---e~~~~-------~~~g~----------------~~v~~~~~~T~~~~~Riar~AFe~A~~r~~~vt~v~K 214 (410)
T PLN00103 161 EGKDEKT---ELEVY-------NFTGA----------------GGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTK 214 (410)
T ss_pred cCCCcee---EEEee-------ccCCC----------------cceEEEEEcCHHHHHHHHHHHHHHHHhcCCcEEEECC
Confidence 9999999 22211 01110 1233333349999999999999999999988999999
Q ss_pred CCcccccchhHHHHHHHHHHhhhhccccCCCceEeeeeHHHHHHHHHhCCCCcEEEeCCchhhhHHhhhhhhcCcccccc
Q 019837 215 NTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMT 294 (335)
Q Consensus 215 aNVl~~~~g~f~~~~~eva~~eY~~~~~~p~V~~~~~~VDa~~~~lv~~P~~FViv~~NlfGDILSDlaA~l~GslGlap 294 (335)
+|||+.++|+||++|+||++++||..|.+|+|+++|+|||++||+||++|++|||||+|||||||||++|+|+|||||+|
T Consensus 215 aNVlk~~dglf~~~~~eva~~~~~~eyp~~~I~~~~~lVDa~a~~lv~~P~~fViv~~NLfGDIlSDlaA~l~GslGlap 294 (410)
T PLN00103 215 NTILKKYDGRFKDIFQEVYEAQWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMT 294 (410)
T ss_pred CCCchhhHHHHHHHHHHHHHhhhhhhCCCCceEEEEeEHHHHHHHHhcCCCCCEEEEcccchHHHHHHHHHhcCchhhhh
Confidence 99999999999999999996445555533389999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCceeeecCCCCccccccc-ccCCCCCCCCccccC
Q 019837 295 SVLVCPDGKTIEAEAAHGTVTRHYRV-HQKDDQGSCTYYPWI 335 (335)
Q Consensus 295 Sanig~~~~~~~fEp~HGSAPdiagk-~~aGk~~~aNP~a~I 335 (335)
|+|+|+++..+||||+|||||||..+ +++|||+ |||+|||
T Consensus 295 Sanig~~~~~~~FEp~HGSApd~~~~~diaGk~i-ANP~A~I 335 (410)
T PLN00103 295 SVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETS-TNSIASI 335 (410)
T ss_pred ccccCCCCCcEEEeCCCCcCcccchhhhhcCCCc-cChHHHH
Confidence 99999875237999999999983211 1247777 9999986
No 20
>TIGR02088 LEU3_arch isopropylmalate/isohomocitrate dehydrogenases. This family is closely related to both the LeuB genes found in TIGR00169 and the mitochondrial eukaryotic isocitrate dehydratases found in TIGR00175. All of these are included within the broader subfamily model, pfam00180.
Probab=100.00 E-value=1.6e-90 Score=667.37 Aligned_cols=269 Identities=21% Similarity=0.198 Sum_probs=244.7
Q ss_pred EEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecchhhhhccCCcccHHHHHHHHhcCeeeecCCCCCCcchhhHHHhh
Q 019837 12 IVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLK 91 (335)
Q Consensus 12 I~vipGDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~lkg~~~~p~~~~~~~~~l~ 91 (335)
|++|||||||||||+++++++...+++|+|+++++|.+++++||+++|++++++|+++|++||||+++|..
T Consensus 1 i~~ipGDGIGpEv~~~a~~vl~~~~~~i~~~~~~~G~~~~~~~G~~lp~~~l~~~~~~da~l~Gavg~p~~--------- 71 (322)
T TIGR02088 1 VAVIPGDGIGPEVIEAAIRILNKLGLEIEFIEFEAGDEALKKYGSALPEDTLEEIRKADAILFGAVTTPAN--------- 71 (322)
T ss_pred CEEeCCCCccHHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHhCCCCCHHHHHHHHHCCEEEECcccCCCC---------
Confidence 68999999999999999977765689999999999999999999999999999999999999999999953
Q ss_pred hcCCCcchhHhhhcCceEEeecccccCCCCCCCCC--CCCEEEEeeccCccccccceeeeCCCceeeeeecCCCCccchh
Q 019837 92 QMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGW--TKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTEL 169 (335)
Q Consensus 92 ~~~~s~~~~LRk~ldlyanvRPv~~~~~~~~~~~~--~~divivREnteg~Y~g~e~~~~~~g~~~~~~~~~~g~~~~~~ 169 (335)
.++.|+|++|||+||||+|+||+ |++|++.... ++|++||||||||+|+|.++.. +
T Consensus 72 ~~~~s~~~~LR~~ldlyanvRP~--r~~~g~~~~~~~~iD~vivREnteG~Y~g~~~~~--~------------------ 129 (322)
T TIGR02088 72 PGYKSVIVTLRKELDLYANVRPA--KSLPGIPDLYPNGKDIVIVRENTEGLYAGFEFGF--S------------------ 129 (322)
T ss_pred CCccChHHHHHHHcCCEEEEEEe--eccCCCCCCCCCCCCEEEEEeCcCCeeecccccc--C------------------
Confidence 14678899999999999999998 6677665443 6899999999999999976421 0
Q ss_pred hhccccCccceeeeeeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchhHHHHHHHHHHhhhhccccCCCceEe
Q 019837 170 EVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYE 249 (335)
Q Consensus 170 ~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r~k~Vt~v~KaNVl~~~~g~f~~~~~eva~~eY~~~~~~p~V~~~ 249 (335)
+.+..+++|||+++|||+|+||+||++|+++||++||+|||+.|+|+|+++|+||+ ++| | |+++
T Consensus 130 --------~~a~~~~~~tr~~~eRi~r~AF~~A~~r~~~Vt~v~KaNvl~~t~glf~~~~~eva-~~y------p-v~~~ 193 (322)
T TIGR02088 130 --------DRAIAIRVITREGSERIARFAFNLAKERNRKVTCVHKANVLKGTDGLFREVCREIA-KRY------G-VEYR 193 (322)
T ss_pred --------cceEEEEEecHHHHHHHHHHHHHHHHHcCCcEEEEeCCcchhhhHHHHHHHHHHHH-HhC------C-eeee
Confidence 11344789999999999999999999998889999999999999999999999999 599 9 9999
Q ss_pred eeeHHHHHHHHHhCCCCc-EEEeCCchhhhHHhhhhhhcCccccccccccCCCCCceeeecCCCCcccccccccCCCCCC
Q 019837 250 HRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKDDQGS 328 (335)
Q Consensus 250 ~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaA~l~GslGlapSanig~~~~~~~fEp~HGSAPdiagk~~aGk~~~ 328 (335)
|++||++||+||++|++| ||||+|||||||||++|+|+|||||+||+|+|++ ++||||.|||||||| ||++
T Consensus 194 ~~~vDa~~~~lv~~P~~fdViv~~NlfGDIlSDlaa~l~GglGl~pSanig~~--~a~fep~hGsa~dia-----G~~~- 265 (322)
T TIGR02088 194 DMYVDSAAMNLVKDPWRFDVIVTTNMFGDILSDLASALAGSLGLAPSANIGDR--KALFEPVHGSAPDIA-----GKGI- 265 (322)
T ss_pred eeeHHHHHHHHhhCCcCceEEEecCcccchhhHHHHhhcCCCCCCceeEEcCC--ceEEecCCCChhHhC-----CCCC-
Confidence 999999999999999999 9999999999999999999999999999999976 489999999999997 6676
Q ss_pred CCccccC
Q 019837 329 CTYYPWI 335 (335)
Q Consensus 329 aNP~a~I 335 (335)
|||+|||
T Consensus 266 aNp~a~i 272 (322)
T TIGR02088 266 ANPTAAI 272 (322)
T ss_pred CChHHHH
Confidence 9999986
No 21
>PLN00123 isocitrate dehydrogenase (NAD+)
Probab=100.00 E-value=2.4e-90 Score=671.37 Aligned_cols=268 Identities=19% Similarity=0.189 Sum_probs=240.9
Q ss_pred ccEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecchhhhhccCCcccHHHHHHHHhcCeeeecCCCCCCcchhhHHH
Q 019837 10 NPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFV 89 (335)
Q Consensus 10 ~~I~vipGDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~lkg~~~~p~~~~~~~~~ 89 (335)
++|++|||||||||||+++++++.+.+++|+|+++++|++ |.+||++++++|+++|++||||+++|..
T Consensus 31 ~~I~vipGDGIGpEV~~~a~~vl~a~~~~i~~~~~~~G~~-----~~~lp~~~l~~~~~~da~L~Gavg~p~~------- 98 (360)
T PLN00123 31 RAVTLIPGDGIGPLVTGAVEQVMEAMHAPVYFERYEVHGD-----MKKVPEEVLESIRRNKVCLKGGLATPVG------- 98 (360)
T ss_pred eEEEEECCCCccHHHHHHHHHHHHhCCCceEEEEEccCCC-----CccCCHHHHHHHHHCCEEEEccccCCCC-------
Confidence 6899999999999999999977766689999999999986 5789999999999999999999999842
Q ss_pred hhhcCCCcchhHhhhcCceEEeecccccCCCCCCCCC-CCCEEEEeeccCccccccceeeeCCCceeeeeecCCCCccch
Q 019837 90 LKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGW-TKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTE 168 (335)
Q Consensus 90 l~~~~~s~~~~LRk~ldlyanvRPv~~~~~~~~~~~~-~~divivREnteg~Y~g~e~~~~~~g~~~~~~~~~~g~~~~~ 168 (335)
.+++|+|+.||++||||||+||+ |++|++...+ ++|++||||||||+|+|.++... +|
T Consensus 99 --~~~~s~~l~LR~~ldLyaNvRP~--k~~pg~~~~~~~iD~viVREnteG~Y~g~~~~~~-~g---------------- 157 (360)
T PLN00123 99 --GGVSSLNVQLRKELDLFASLVNC--FNLPGLPTRHENVDIVVIRENTEGEYSGLEHEVV-PG---------------- 157 (360)
T ss_pred --cCccchHHHHHHHcCCEEEEEEe--ecCCCCCCccCCCCEEEEEeCCCceeccceeecC-CC----------------
Confidence 13567899999999999999997 7788876543 57999999999999999875421 11
Q ss_pred hhhccccCccceeeeeeeCHHHHHHHHHHHHHHHHhCC-CCEEEEeCCCcccccchhHHHHHHHHHHhhhhccccCCCce
Q 019837 169 LEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKK-WPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIW 247 (335)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r~-k~Vt~v~KaNVl~~~~g~f~~~~~eva~~eY~~~~~~p~V~ 247 (335)
.+..+++|||+++|||+|+||+||++|+ |+||++||+|||+.++|+|+++|+||| ++| |+|+
T Consensus 158 ----------~~~~~~v~Tr~~~eRIar~AF~~A~~r~rkkVt~v~KaNvl~~t~glf~~~~~eva-~ey------PdV~ 220 (360)
T PLN00123 158 ----------VVESLKVITKFCSERIAKYAFEYAYLNNRKKVTAVHKANIMKLADGLFLESCREVA-KKY------PGIK 220 (360)
T ss_pred ----------ceEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECCccccchhhHHHHHHHHHH-hhC------CCce
Confidence 1334789999999999999999999985 679999999999999999999999999 599 9999
Q ss_pred EeeeeHHHHHHHHHhCCCCc-EEEeCCchhhhHHhhhhhhcCccccccccccCCCCCceeeecCC--CCc--cccccccc
Q 019837 248 YEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAH--GTV--TRHYRVHQ 322 (335)
Q Consensus 248 ~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaA~l~GslGlapSanig~~~~~~~fEp~H--GSA--Pdiagk~~ 322 (335)
++|+|||++|||||++|++| ||||+|||||||||+||+|+|||||+||+|||++ ++||||+| ||| ||||
T Consensus 221 ~~~~~VDa~~~~Lv~~P~~fDViVt~NlfGDILSDlaa~l~GglGl~pSanig~~--~a~FEpvh~hGSA~~PdIA---- 294 (360)
T PLN00123 221 YNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVANTAAGIAGGTGVMPGGNVGAD--HAVFEQGASAGNVGNEKLV---- 294 (360)
T ss_pred EeeeeHHHHHHHHhhCcccCcEEEEcCcccchhhhHHHHhcCCcCccceEeeCCC--ceEEEecccCCCcCCcccc----
Confidence 99999999999999999999 9999999999999999999999999999999976 49999977 999 9997
Q ss_pred CCCCCCCCccccC
Q 019837 323 KDDQGSCTYYPWI 335 (335)
Q Consensus 323 aGk~~~aNP~a~I 335 (335)
|||+ |||+|||
T Consensus 295 -Gk~i-ANP~a~I 305 (360)
T PLN00123 295 -EQKK-ANPVALL 305 (360)
T ss_pred -CCCc-cChHHHH
Confidence 5676 9999986
No 22
>TIGR00175 mito_nad_idh isocitrate dehydrogenase, NAD-dependent, mitochondrial type. The NADP-dependent IDH of Thermus aquaticus thermophilus strain HB8 resembles these NAD-dependent IDH, except for the residues involved in cofactor specificity, much more closely than it resembles other prokaryotic NADP-dependent IDH, including that of Thermus aquaticus strain YT1.
Probab=100.00 E-value=8.1e-90 Score=665.90 Aligned_cols=272 Identities=19% Similarity=0.174 Sum_probs=243.4
Q ss_pred ccEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecchhhhhccCCcccHHHHHHHHhcCeeeecCCCCCCcchhhHHH
Q 019837 10 NPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFV 89 (335)
Q Consensus 10 ~~I~vipGDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~lkg~~~~p~~~~~~~~~ 89 (335)
++|+||||||||||||+++++++...+++|+|+++++|++ +++|+++|++++++|+++|++||||+++|...+
T Consensus 4 ~~i~vlpGDGIGpEv~~~a~~vl~~~~~~i~~~~~~~G~~--~~~g~~lp~~~l~~~~~~da~l~Gav~~p~~~~----- 76 (333)
T TIGR00175 4 YTVTLIPGDGIGPEISGSVKKIFRAANVPIEFEEIDVSPQ--TDGKTEIPDEAVESIKRNKVALKGPLETPIGKG----- 76 (333)
T ss_pred EEEEEECCCcccHHHHHHHHHHHHhCCCceEEEEEecChh--hccCCcCCHHHHHHHHHCCEEEEcccCCccccc-----
Confidence 5799999999999999999977766689999999999997 678999999999999999999999999984321
Q ss_pred hhhcCCCcchhHhhhcCceEEeecccccCCCCCCCCC-CCCEEEEeeccCccccccceeeeCCCceeeeeecCCCCccch
Q 019837 90 LKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGW-TKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTE 168 (335)
Q Consensus 90 l~~~~~s~~~~LRk~ldlyanvRPv~~~~~~~~~~~~-~~divivREnteg~Y~g~e~~~~~~g~~~~~~~~~~g~~~~~ 168 (335)
.++|+|++|||+||||+|+||+ |++|++.+.+ ++|++||||||||+|+|.++... +|
T Consensus 77 ---~~~s~~~~lR~~ldlyanvRP~--k~~pg~~~~~~~iD~vivREnteG~Y~g~~~~~~-~~---------------- 134 (333)
T TIGR00175 77 ---GHRSLNVALRKELDLYANVVHC--KSLPGFKTRHEDVDIVIIRENTEGEYSGLEHESV-PG---------------- 134 (333)
T ss_pred ---cccchhHHHHHHcCCEEEeEEe--cCCCCCCCCCCCcCEEEEEEeCCCcccceeEecc-CC----------------
Confidence 2678899999999999999997 7788876553 57999999999999999875421 11
Q ss_pred hhhccccCccceeeeeeeCHHHHHHHHHHHHHHHHhCC-CCEEEEeCCCcccccchhHHHHHHHHHHhhhhccccCCCce
Q 019837 169 LEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKK-WPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIW 247 (335)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r~-k~Vt~v~KaNVl~~~~g~f~~~~~eva~~eY~~~~~~p~V~ 247 (335)
.+..+++|||+++|||+|+||+||++|+ |+||++||+|||+.|+|+||++|+||+ ++| |+|+
T Consensus 135 ----------~~~~~~~~Tr~~~eRi~r~Af~~A~~r~~k~Vt~v~KaNvl~~t~glf~~~~~eva-~~y------p~v~ 197 (333)
T TIGR00175 135 ----------VVESLKVITRDKSERIARYAFEYARKNGRKKVTAVHKANIMKLADGLFLNVCREVA-KEY------PDIT 197 (333)
T ss_pred ----------eEEEEEecCHHHHHHHHHHHHHHHHhcCCCeEEEEECCccchhhHHHHHHHHHHHH-HHC------CCCe
Confidence 1234678999999999999999999997 569999999999999999999999999 589 9999
Q ss_pred EeeeeHHHHHHHHHhCCCCc-EEEeCCchhhhHHhhhhhhcCccccccccccCCCCCceeeecC-CCCcccccccccCCC
Q 019837 248 YEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAA-HGTVTRHYRVHQKDD 325 (335)
Q Consensus 248 ~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaA~l~GslGlapSanig~~~~~~~fEp~-HGSAPdiagk~~aGk 325 (335)
++|+|||+++|+||++|++| ||||+|||||||||++|+++|||||+||+|+|++ ++||||+ |||||||| ||
T Consensus 198 ~~~~~vDa~~~~lv~~P~~fdViVt~NlfGDILSDlaa~l~GslGl~pSanig~~--~a~fEp~~hGSApdia-----Gk 270 (333)
T TIGR00175 198 FESMIVDNTCMQLVSRPSQFDVMVMPNLYGNILSNLGAGLVGGPGLVPGANIGRD--YAVFEPGVRHTGPDIA-----GQ 270 (333)
T ss_pred eeeeeHHHHHHHHhcCcccccEEEEccccchhhhHHHHHhcCCcccCceeEEcCC--CceEeccCCCCchhhC-----CC
Confidence 99999999999999999999 9999999999999999999999999999999976 4899995 59999997 56
Q ss_pred CCCCCccccC
Q 019837 326 QGSCTYYPWI 335 (335)
Q Consensus 326 ~~~aNP~a~I 335 (335)
++ |||+|||
T Consensus 271 ~i-aNP~a~I 279 (333)
T TIGR00175 271 NI-ANPTALI 279 (333)
T ss_pred Cc-cChHHHH
Confidence 66 9999987
No 23
>TIGR00183 prok_nadp_idh isocitrate dehydrogenase, NADP-dependent, prokaryotic type. Prokaryotic NADP-dependent isocitrate dehydrogenases resemble their NAD-dependent counterparts and 3-isopropylmalate dehydrogenase (an NAD-dependent enzyme) more closely than they resemble eukaryotic NADP-dependent isocitrate dehydrogenases.
Probab=100.00 E-value=7.9e-90 Score=682.08 Aligned_cols=299 Identities=20% Similarity=0.169 Sum_probs=249.3
Q ss_pred EEEECCCCchHHHHHHHHHHHhcC---C----CceEEEEEecchhhhhccC--CcccHHHHHHHHhcCeeeecCCCCCCc
Q 019837 12 IVEMDGDEMTRVFWKSIKDKLIFP---F----LELDIKYFDLGLPNRDATD--DKVTVESAEATLKYNVAIKCATITPDE 82 (335)
Q Consensus 12 I~vipGDGIGpEv~~~~~~~~~~~---~----~~i~~~~~~~G~~~~~~~G--~~lp~~tl~~~~~~da~lkg~~~~p~~ 82 (335)
|+||||||||||||+++++++.+. + ++|+|+++++|+++|++|| ++||++++++|+++|++||||+++|..
T Consensus 29 I~vipGDGIGpEv~~~a~~vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~~~lp~~tl~~~~~~da~l~Ga~~tp~~ 108 (416)
T TIGR00183 29 IPYIEGDGIGVDVTPAAIKVLDAAVEKAYKGEKKIVWFEVYAGEKAYQLYGQDQWLPADTLDAIKEYRVAIKGPLTTPVG 108 (416)
T ss_pred EEEeCCCcccHHHHHHHHHHHHHHHHhccCCCCceEEEEEecCHHHHHHhCCCCCCCHHHHHHHHHCCEEEECcccCCCC
Confidence 999999999999999999766411 1 5999999999999999999 999999999999999999999999843
Q ss_pred chhhHHHhhhcCCCcchhHhhhcCceEEeecccccCCCCCCCCC----CCCEEEEeeccCccccccceeeeCCCceee-e
Q 019837 83 ARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGW----TKPICIGRHAFGDQYRATDTVIQGPGKLKL-V 157 (335)
Q Consensus 83 ~~~~~~~l~~~~~s~~~~LRk~ldlyanvRPv~~~~~~~~~~~~----~~divivREnteg~Y~g~e~~~~~~g~~~~-~ 157 (335)
.+++|+|+.||++||||||+||+ +++|++.+.+ ++||+||||||||+|+|.++....++..+. .
T Consensus 109 ---------~~~~s~~l~LR~~ldLyaNvRP~--k~~pgl~s~~~~~~~vDivIvREnteG~Y~g~~~~~~~~~~~~~~~ 177 (416)
T TIGR00183 109 ---------GGIRSLNVALRQELDLYVCLRPV--RYYKGVPSPVKHPEKVDMVIFRENTEDIYAGIEWAEGSEEAKKLIR 177 (416)
T ss_pred ---------ccccCcHHHHHHHcCCEEEEeEe--ecCCCCCCcCCCCCCCCEEEEEeCCCCcccccccccCcccceeeec
Confidence 24789999999999999999998 5566554432 579999999999999999865322211110 1
Q ss_pred eecC-CCCccchhhhccccCccceeeeeeeCHHHHHHHHHHHHHHHHhCC-CCEEEEeCCCcccccchhHHHHHHHHHHh
Q 019837 158 FVPE-GKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKK-WPLYLSTKNTILKKYDGRFKDIFQEVYEA 235 (335)
Q Consensus 158 ~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r~-k~Vt~v~KaNVl~~~~g~f~~~~~eva~~ 235 (335)
|... .|. ....++. +.++.+++||+++++||+|+||+||++|+ ++||++||+|||+.|||+|++++.|||++
T Consensus 178 ~~~~~~g~-----~~~~~~~-~~a~~~~~~tr~~~~Riar~AFe~A~~r~rk~Vt~v~KaNvlk~tdglf~e~~~eva~~ 251 (416)
T TIGR00183 178 FLQNELGV-----KKIRFPE-DSGIGIKPISEEGTKRLVRAAIEYAIENDRKSVTLVHKGNIMKFTEGAFRDWGYELAKK 251 (416)
T ss_pred ccccccCc-----ccccccc-ccEEEEEEecHHHHHHHHHHHHHHHHhcCCCeEEEEECCCccccchhhHHHHHHHHHHH
Confidence 2211 010 0011111 12445789999999999999999999995 68999999999999999999988899954
Q ss_pred hhhccccC-------------CCceEeeeeHHHHHHHHHhCCCCc-EEEeCCchhhhHHhhhhhhcCccccccccccCCC
Q 019837 236 NWKSKFEA-------------AGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPD 301 (335)
Q Consensus 236 eY~~~~~~-------------p~V~~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaA~l~GslGlapSanig~~ 301 (335)
+|+.+|++ |+|+++|+|||+||||||++|++| ||||+|||||||||++|+|+|||||+||+|||++
T Consensus 252 ey~~~~~~~~lw~~~~~p~~~p~I~~~~~~vDa~~~~lv~~P~~fDVivt~NlfGDILSDlaa~l~GslGlapSanig~~ 331 (416)
T TIGR00183 252 EFGAECITWGLWDKYKNPNPGKEIVIKDRIADAFLQQILTRPDEYDVIATMNLNGDYISDALAAQVGGIGIAPGANIGDE 331 (416)
T ss_pred HHhHhhhhccccccccCcccCCceeEeehhHHHHHHHHhhCcccCcEEEEcCcccchhhHHHHHhcCchhhcceeeeCCC
Confidence 68655543 499999999999999999999999 9999999999999999999999999999999965
Q ss_pred CCceeeecCCCCcccccccccCCCCCCCCccccC
Q 019837 302 GKTIEAEAAHGTVTRHYRVHQKDDQGSCTYYPWI 335 (335)
Q Consensus 302 ~~~~~fEp~HGSAPdiagk~~aGk~~~aNP~a~I 335 (335)
++||||+|||||||| |||+ |||+|||
T Consensus 332 --~alFEp~HGSAPdiA-----Gk~i-ANP~a~I 357 (416)
T TIGR00183 332 --IGIFEATHGTAPKYA-----GQDK-VNPGSII 357 (416)
T ss_pred --ceEEECCCCCchhhc-----CCCC-CCcHHHH
Confidence 599999999999997 5566 9999986
No 24
>PRK07362 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=1.9e-88 Score=668.99 Aligned_cols=300 Identities=19% Similarity=0.165 Sum_probs=244.3
Q ss_pred EEEECCCCchHHHHHHHHHHHhcC-------CCceEEEEEecchhhhhccCC--cccHHHHHHHHhcCeeeecCCCCCCc
Q 019837 12 IVEMDGDEMTRVFWKSIKDKLIFP-------FLELDIKYFDLGLPNRDATDD--KVTVESAEATLKYNVAIKCATITPDE 82 (335)
Q Consensus 12 I~vipGDGIGpEv~~~~~~~~~~~-------~~~i~~~~~~~G~~~~~~~G~--~lp~~tl~~~~~~da~lkg~~~~p~~ 82 (335)
|++|||||||||||+++++++.+. +++|+|.++++|+++++++|+ .||++|+++|+++|++||||+++|..
T Consensus 31 I~vIpGDGIGpEI~~aa~kVL~a~~~~~~~~~~~i~~~~~~~G~~a~~~~G~~~~lP~etle~i~~~da~L~Gpi~tP~~ 110 (474)
T PRK07362 31 IPFIRGDGTGVDIWPATQKVLDAAVAKAYGGERKINWFKVYAGDEACDLYGTYQYLPEDTLEAIREYGVAIKGPLTTPIG 110 (474)
T ss_pred EEEeCCCcccHHHHHHHHHHHHHHHHhccCCCCCeEEEEEccCHHHHHHhCCCCCCCHHHHHHHHHCCEEEECcccCCCC
Confidence 999999999999999999766421 158999999999999999996 79999999999999999999999843
Q ss_pred chhhHHHhhhcCCCcchhHhhhcCceEEeecccccCCCCCCCCC----CCCEEEEeeccCccccccceeeeCCCceee--
Q 019837 83 ARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGW----TKPICIGRHAFGDQYRATDTVIQGPGKLKL-- 156 (335)
Q Consensus 83 ~~~~~~~l~~~~~s~~~~LRk~ldlyanvRPv~~~~~~~~~~~~----~~divivREnteg~Y~g~e~~~~~~g~~~~-- 156 (335)
.+++|+|++|||.||||+|+||+ +.+|++.+++ ++|+|||||||||+|+|+++....+...+.
T Consensus 111 ---------~g~~s~~l~LRk~ldLyaNvRPv--r~~pgl~sp~k~~~~iD~vIvRENTEGlY~G~~~~~~~~~~~~~~~ 179 (474)
T PRK07362 111 ---------GGIRSLNVALRQIFDLYSCVRPC--RYYAGTPSPHKNPEKLDVIVYRENTEDIYMGIEWEAGDEIGDKLIK 179 (474)
T ss_pred ---------cCccchHHHHHHHcCCceeeeEe--eccCCCCCcccCCCCCCEEEEEECCCceecccccccccccchhccc
Confidence 24678899999999999999998 6667665543 579999999999999998764211000000
Q ss_pred ----eeecCCCCccchhhhccccCccceeeeeeeCHHHHHHHHHHHHHHHHhC---CCCEEEEeCCCcccccchhHHHHH
Q 019837 157 ----VFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQK---KWPLYLSTKNTILKKYDGRFKDIF 229 (335)
Q Consensus 157 ----~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r---~k~Vt~v~KaNVl~~~~g~f~~~~ 229 (335)
.+....+. . -..+.+. +.++.+++|||.+++||+|+||+||++| +++||+|||+|||++++|+|++++
T Consensus 180 ~~~~~~~~~~~~---~-~~~~~~~-~~a~~~k~iTr~g~eRI~r~AFe~A~~r~~~rkkVT~VhKaNVlk~t~glf~~~~ 254 (474)
T PRK07362 180 HLNEEVIPASPE---L-GKRQIPL-GSGIGIKPVSKTGSQRHIRRAIEHALRLPGDKRHVTLVHKGNIMKYTEGAFRDWG 254 (474)
T ss_pred cccccccccccc---c-ccccccc-ceeeeeeeccHHHHHHHHHHHHHHHHhcCCCCCeEEEEECCcccccchhHHHHHH
Confidence 00000000 0 0000111 1244578999999999999999999998 367999999999999999999988
Q ss_pred HHHHHhhhhcc---------------cc----------------------------------------------CCCceE
Q 019837 230 QEVYEANWKSK---------------FE----------------------------------------------AAGIWY 248 (335)
Q Consensus 230 ~eva~~eY~~~---------------~~----------------------------------------------~p~V~~ 248 (335)
.|||+++|+++ +- .|+|.+
T Consensus 255 ~evA~~~~~~~~v~~~~~~~~~~~~~~p~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 334 (474)
T PRK07362 255 YELATTEFRDECVTERESWILSNKEKNPNISIEDNARMIEPGYDSLTPEKKAAICAEVKEVLDSIWSSHGNGKWKEKVLV 334 (474)
T ss_pred HHHHHHhhhhhhhhhhhhhhhcccccCccccccccccccccccccccccccccccccccccccchhhccccccCCCccee
Confidence 89995467332 21 145888
Q ss_pred eeeeHHHHHHHHHhCCCCc-EEEeCCchhhhHHhhhhhhcCccccccccccCCCCCceeeecCCCCcccccccccCCCCC
Q 019837 249 EHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKDDQG 327 (335)
Q Consensus 249 ~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaA~l~GslGlapSanig~~~~~~~fEp~HGSAPdiagk~~aGk~~ 327 (335)
+++|||++|||||++|++| ||||+|||||||||++|+|+|||||+||||||++ .+||||+|||||||| |||+
T Consensus 335 ~~~~vDa~a~~lv~~P~~FDVIVt~NLfGDILSDlaA~lvGglGlaPSANiG~~--~a~FEpvHGSAPdIA-----Gk~i 407 (474)
T PRK07362 335 DDRIADSIFQQIQTRPQEYSILATLNLNGDYISDAAAAIVGGLGMAPGANIGDN--AAIFEATHGTAPKHA-----GLDR 407 (474)
T ss_pred ehHHHHHHHHHHHhChhhCCEEEEccccchhhhHHHHHhcCCccccceeeeCCC--ceeeecCCCCchhhc-----CCCC
Confidence 9999999999999999999 9999999999999999999999999999999966 499999999999997 5566
Q ss_pred CCCccccC
Q 019837 328 SCTYYPWI 335 (335)
Q Consensus 328 ~aNP~a~I 335 (335)
|||+|||
T Consensus 408 -ANP~A~I 414 (474)
T PRK07362 408 -INPGSVI 414 (474)
T ss_pred -cCcHHHH
Confidence 9999986
No 25
>KOG0785 consensus Isocitrate dehydrogenase, alpha subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=5.2e-89 Score=637.85 Aligned_cols=272 Identities=21% Similarity=0.251 Sum_probs=249.6
Q ss_pred ccEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecchhhhhccCCcccHHHHHHHHhcCeeeecCCCCCCcchhhHHH
Q 019837 10 NPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFV 89 (335)
Q Consensus 10 ~~I~vipGDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~lkg~~~~p~~~~~~~~~ 89 (335)
+++++||||||||||++++++++.++.++|+|+..|++...--.++..+|+++++++++++++||||+.||.++
T Consensus 36 ~~vtLIpGDGIGpEi~~av~kvf~aak~pIewd~~dv~~~~~~~~~~~ip~~~~esl~~nkvgLkGp~~tPi~k------ 109 (365)
T KOG0785|consen 36 ITVTLIPGDGIGPEISPAVKKVFEAAKVPIEWDFIDVTPIKGPFGGKAIPDEAVESLRKNKVGLKGPVATPIGK------ 109 (365)
T ss_pred eEEEEecCCCCCHHHHHHHHHHHHhcCCCcceeeeeccccccCCCCccCCHHHHHHHHhhcccccCcccCcccc------
Confidence 58999999999999999999888888999999999987764444788999999999999999999999999763
Q ss_pred hhhcCCCcchhHhhhcCceEEeecccccCCCCCCCCCC-CCEEEEeeccCccccccceeeeCCCceeeeeecCCCCccch
Q 019837 90 LKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWT-KPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTE 168 (335)
Q Consensus 90 l~~~~~s~~~~LRk~ldlyanvRPv~~~~~~~~~~~~~-~divivREnteg~Y~g~e~~~~~~g~~~~~~~~~~g~~~~~ 168 (335)
+.+|+|++|||+|+|||||||+ ++++|.+..|+ .|+|++||||||+|+|+||.+. +|
T Consensus 110 ---gh~S~nl~LRK~f~LyANVRPc--~SieG~Kt~Y~~vD~V~IRENTEgeYsgiEh~vv-pG---------------- 167 (365)
T KOG0785|consen 110 ---GHRSLNLALRKEFGLYANVRPC--KSIEGYKTPYDDVDLVIIRENTEGEYSGIEHQVV-PG---------------- 167 (365)
T ss_pred ---ccccHHHHHHHHhchhccceec--ccccCCcCCCCCceEEEEecCCccccccceeecc-cc----------------
Confidence 5679999999999999999996 99999988874 6999999999999999999753 33
Q ss_pred hhhccccCccceeee-eeeCHHHHHHHHHHHHHHHHhCC-CCEEEEeCCCcccccchhHHHHHHHHHHhhhhccccCCCc
Q 019837 169 LEVYNFTGEGGVALS-MYNTDESIRAFAEASMNTAYQKK-WPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGI 246 (335)
Q Consensus 169 ~~~~~~~~~~~~~~~-~~~T~~~~eRiar~AFe~A~~r~-k~Vt~v~KaNVl~~~~g~f~~~~~eva~~eY~~~~~~p~V 246 (335)
++++ ++||+.+++|||+|||+||++++ ++||++||+|||+.+||+|+++|+|++ ++| |||
T Consensus 168 -----------VvqsiK~IT~~AS~Ria~~AF~yAr~~~R~~vtvvHKaNImr~tDGLFle~cre~a-~~y------~dI 229 (365)
T KOG0785|consen 168 -----------VVQSIKLITEAASRRIAEYAFEYARQNGRKRVTVVHKANIMRMTDGLFLECCREVA-KKY------PDI 229 (365)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceEEEehhhhhhhcchHHHHHHHHHh-hhC------Ccc
Confidence 4455 78999999999999999999987 689999999999999999999999998 599 999
Q ss_pred eEeeeeHHHHHHHHHhCCCCc-EEEeCCchhhhHHhhhhhhcCccccccccccCCCCCceeeecCCCCcccccccccCCC
Q 019837 247 WYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKDD 325 (335)
Q Consensus 247 ~~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaA~l~GslGlapSanig~~~~~~~fEp~HGSAPdiagk~~aGk 325 (335)
+++++|+|+||++|+++|..| |+|+||||||||||+||+|+||||+.||+||| ++ .++|||+|||||||| ||
T Consensus 230 ~~eE~~lDt~~l~lv~~P~~~DVlV~PNLYGDIlSD~~agLvGgLGltPS~NiG-~g-~~~~e~vHGsAPDIA-----Gk 302 (365)
T KOG0785|consen 230 KFEEQYLDTCCLKLVRNPSCFDVLVMPNLYGDILSDLCAGLVGGLGLTPSANIG-DG-IVIFEAVHGSAPDIA-----GK 302 (365)
T ss_pred chhHHHHHHHHHHHhcCchhceEEeccchhHHHHHHHHHHhccCcccCCCcccC-CC-eeeeecccCCCcccc-----cC
Confidence 999999999999999999999 99999999999999999999999999999999 66 589999999999997 55
Q ss_pred CCCCCccccC
Q 019837 326 QGSCTYYPWI 335 (335)
Q Consensus 326 ~~~aNP~a~I 335 (335)
++ |||+|.+
T Consensus 303 dl-ANPtAll 311 (365)
T KOG0785|consen 303 DL-ANPTALL 311 (365)
T ss_pred Cc-CCcHHHH
Confidence 65 9999863
No 26
>PF00180 Iso_dh: Isocitrate/isopropylmalate dehydrogenase; InterPro: IPR024084 Isocitrate dehydrogenase (IDH) [, ] is an important enzyme of carbohydrate metabolism which catalyses the oxidative decarboxylation of isocitrate into alpha-ketoglutarate. IDH is either dependent on NAD+ (1.1.1.41 from EC) or on NADP+ (1.1.1.42 from EC). In eukaryotes there are at least three isozymes of IDH: two are located in the mitochondrial matrix (one NAD+-dependent, the other NADP+-dependent), while the third one (also NADP+-dependent) is cytoplasmic. In Escherichia coli the activity of a NADP+-dependent form of the enzyme is controlled by the phosphorylation of a serine residue; the phosphorylated form of IDH is completely inactivated. 3-isopropylmalate dehydrogenase (1.1.1.85 from EC) (IMDH) [, ] catalyses the third step in the biosynthesis of leucine in bacteria and fungi, the oxidative decarboxylation of 3-isopropylmalate into 2-oxo-4-methylvalerate. Tartrate dehydrogenase (1.1.1.93 from EC) [] catalyses the reduction of tartrate to oxaloglycolate. These enzymes are evolutionary related. To this family also belongs the enzyme tartrate dehydrogenase, which shows strong homology to prokaryotic isopropylmalate dehydrogenases and, to a lesser extent, isocitrate dehydrogenase []. This entry represents a structural domain found in all types of isocitrate dehydrogenase, and in isopropylmalate dehydrogenase and tartrate dehydrogenase. The crystal structure of Escherichia coli isopropylmalate dehydrogenase has been described []. ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 1WAL_A 1CNZ_B 2D4V_C 1CM7_A 4AOY_D 3FMX_X 3FLK_C 1A05_A 1X0L_B 4F7I_D ....
Probab=100.00 E-value=3e-87 Score=653.39 Aligned_cols=278 Identities=24% Similarity=0.270 Sum_probs=239.5
Q ss_pred cEEEECCCCchHHHHHHHHHHHhcC----CCceEEEEEecchhhhhccCCcccHHHHHHHHhcCeeeecCCCCCCcchhh
Q 019837 11 PIVEMDGDEMTRVFWKSIKDKLIFP----FLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVK 86 (335)
Q Consensus 11 ~I~vipGDGIGpEv~~~~~~~~~~~----~~~i~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~lkg~~~~p~~~~~~ 86 (335)
+|++|||||||||||+++++++.+. +++|+|+++++|.+++++||++||++++++|+++|++||||+++|....
T Consensus 1 kI~vipGDGIGpEv~~~~~~Vl~a~~~~~~~~~e~~~~~~G~~~~~~~g~~lp~et~~~i~~~daiL~Gai~~p~~~~-- 78 (348)
T PF00180_consen 1 KIAVIPGDGIGPEVMPAALRVLEAAAEKYGLDFEFEEFDIGGEAYDKTGEPLPDETLEAIKRADAILKGAIGTPKPPG-- 78 (348)
T ss_dssp EEEEEEESTTHHHHHHHHHHHHHHHHHHHTEEEEEEEEETSHHHHHHHSSSSHHHHHHHHHHCSEEEEEE--CGGSSS--
T ss_pred CcceeccCcchHHHHHHHHHHHHHHHhhcccccccccccchhhhhhhccccccHHHHHHHhhcCcEEEcccccccccc--
Confidence 6899999999999999999766433 4899999999999999999999999999999999999999999996221
Q ss_pred HHHhhhcCCC--cchhHhhhcCceEEeecccccCCCC--CCCC------CCCCEEEEeeccCccccccceeeeCCCceee
Q 019837 87 EFVLKQMWKS--PNGTIRNILNGTVFREPIICKNVPR--LIPG------WTKPICIGRHAFGDQYRATDTVIQGPGKLKL 156 (335)
Q Consensus 87 ~~~l~~~~~s--~~~~LRk~ldlyanvRPv~~~~~~~--~~~~------~~~divivREnteg~Y~g~e~~~~~~g~~~~ 156 (335)
.++ +.++||++||||+|+||+ +++|+ ..++ .++||+||||||||+|+|.++.... +.
T Consensus 79 -------~~~~~~l~~lR~~ldl~anvRp~--~~~~~~~~~~~~~~~~~~~iDivivREnteG~Y~g~~~~~~~-~~--- 145 (348)
T PF00180_consen 79 -------IRSENGLLKLRKELDLYANVRPV--RSFPGPGVPSPLKDEIPEGIDIVIVRENTEGLYSGIEHEIGD-GG--- 145 (348)
T ss_dssp -------HSHHHHHHHHHHHTTHHEEEEEE--EEECETTGGSSBSHHHHTTSEEEEEEESSSGGGGEEEEEECS-EE---
T ss_pred -------cccHHHHHHHHHhcccceeeEEE--EEeccccccccccccccCcceEEEecccccCcccCCCCceee-cc---
Confidence 122 237999999999999998 55532 2222 2479999999999999999987531 10
Q ss_pred eeecCCCCccchhhhccccCccceeeeeeeCHHHHHHHHHHHHHHHHhC-CCCEEEEeCCCcccccchhHHHHHHHHHHh
Q 019837 157 VFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQK-KWPLYLSTKNTILKKYDGRFKDIFQEVYEA 235 (335)
Q Consensus 157 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r-~k~Vt~v~KaNVl~~~~g~f~~~~~eva~~ 235 (335)
. + +..+..+++|||+++|||+|+||+||++| +|+||++||+|||+.++ +|+++|+||+++
T Consensus 146 --~---------------~-~~~a~~~~~~t~~~~eRi~r~AF~~A~~r~~k~Vt~v~KaNvl~~~~-lf~~~~~eva~~ 206 (348)
T PF00180_consen 146 --T---------------P-DEVAIDTKVITREGIERIARFAFEYARKRGRKKVTVVHKANVLKSTD-LFREVFQEVAKQ 206 (348)
T ss_dssp --E---------------G-SSEEEEEEEEEHHHHHHHHHHHHHHHHHTTTSEEEEEESTTTSTTHH-HHHHHHHHHHHH
T ss_pred --C---------------C-CceEEEeeccccchhhHHHHHHHHHHHHhCCceEEEEeccchhHHHH-HHHHHHHHHHHh
Confidence 0 0 02355578999999999999999999999 68999999999999888 999999999944
Q ss_pred hhhccccCCCceEeeeeHHHHHHHHHhCCCCc-EEEeCCchhhhHHhhhhhhcCccccccccccCCCCCceeeecCCCCc
Q 019837 236 NWKSKFEAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTV 314 (335)
Q Consensus 236 eY~~~~~~p~V~~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaA~l~GslGlapSanig~~~~~~~fEp~HGSA 314 (335)
+| |+|++++++||+++|+||++|++| ||||+|||||||||++|+++|||||+||+|+|++. ++||||+||||
T Consensus 207 ~y------p~I~~~~~~vD~~~~~Lv~~P~~fdViv~~Nl~GDIlSDl~a~l~G~lGl~psanig~~~-~a~fEp~HGSA 279 (348)
T PF00180_consen 207 EY------PDIEVEHMLVDAAAMQLVKNPEQFDVIVTPNLFGDILSDLAAGLVGGLGLAPSANIGPDG-HAMFEPVHGSA 279 (348)
T ss_dssp TH------TTSEEEEEEHHHHHHHHHHSGGGESEEEEEHHHHHHHHHHHHHHHTSGGGEEEEEEETSS-EEEEEESSTTT
T ss_pred hc------ceeEeeeeechhhhheeecCCcceeEEeecchhHHHHHHHhhhcCCChhhhhhhccCccc-ccccccccccc
Confidence 99 999999999999999999999999 99999999999999999999999999999999755 69999999999
Q ss_pred ccccccccCCCCCCCCccccC
Q 019837 315 TRHYRVHQKDDQGSCTYYPWI 335 (335)
Q Consensus 315 Pdiagk~~aGk~~~aNP~a~I 335 (335)
|||| ||++ |||+|||
T Consensus 280 pdia-----Gk~~-aNP~a~I 294 (348)
T PF00180_consen 280 PDIA-----GKGI-ANPIAMI 294 (348)
T ss_dssp GGGT-----TSSH-S-THHHH
T ss_pred cccc-----CCcc-cCcHHHH
Confidence 9997 5565 9999986
No 27
>PLN00096 isocitrate dehydrogenase (NADP+); Provisional
Probab=100.00 E-value=5.8e-83 Score=620.72 Aligned_cols=317 Identities=33% Similarity=0.447 Sum_probs=298.9
Q ss_pred EEECCCCchHHHHHHHHHHHhcCCCceE-EEEEecchhhhhccCCcccHHHHHHHHhcCeeeecCCCCCCcchhhHHHhh
Q 019837 13 VEMDGDEMTRVFWKSIKDKLIFPFLELD-IKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLK 91 (335)
Q Consensus 13 ~vipGDGIGpEv~~~~~~~~~~~~~~i~-~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~lkg~~~~p~~~~~~~~~l~ 91 (335)
+.|.||.|.+-+|+..++.++.++++++ |++||+|.+++++|.+++.-|+.++++++.+++|||+.||+.+|++|+.|.
T Consensus 2 v~~~gdemtr~~~~~i~~~li~p~~d~~~~~y~DL~~~~Rd~T~dqvt~daa~a~~~~~vgvKcatiTp~~~rv~e~~lk 81 (393)
T PLN00096 2 VYVAGEEMTRYTMDLILAKWIEPHVDTSAWEFFDLRAKNRDDTEDQVLRDVIEAGARLKAIFKEPTITPTADQVKRLGLK 81 (393)
T ss_pred eeecchHHHHHHHHHHHHhhccceeccccceeeccCCccccccCCcchHHHHHHHHHhCeeeeecccCCCHHHHHhhchh
Confidence 6789999999999999988999999996 999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCcchhHhhhcCc-eEEeecccccCCCCCCCCCCCCEEEEeeccCccccccceeeeCCCceeeeeecCCCCccchhh
Q 019837 92 QMWKSPNGTIRNILNG-TVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELE 170 (335)
Q Consensus 92 ~~~~s~~~~LRk~ldl-yanvRPv~~~~~~~~~~~~~~divivREnteg~Y~g~e~~~~~~g~~~~~~~~~~g~~~~~~~ 170 (335)
+.|+|||.+||+.||. .++..|+.|+++| ++|+.||+|.|+..+|.|.. ++.+.++|++++.|.+.+|.++.+.+
T Consensus 82 ~~w~sPNgtiR~~l~G~tvfR~pi~~~~i~---~~w~kpi~i~Rha~gd~y~a-~~~~~~~g~~~~~~~~~~g~~~~~~~ 157 (393)
T PLN00096 82 KAWGSPNGAMRRGWNGITISRDTIHIDGVE---LGYKKPVFFERHAVGGEYSA-GYKIVGKGTLVTTFVPEEGGKPIVVD 157 (393)
T ss_pred hhcCCCcHHHHhhcCCceEeeCCEecCCCC---CCccCceEEEeeccCCcccc-ceEecCCcEEEEEEEeCCCCCceEEE
Confidence 9999999999999999 9999999888775 78999999999999999999 99999999999999998887777778
Q ss_pred hccccCccceeeeeeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchhHHHHHHHHHHhhhhccccC-----CC
Q 019837 171 VYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEA-----AG 245 (335)
Q Consensus 171 ~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r~k~Vt~v~KaNVl~~~~g~f~~~~~eva~~eY~~~~~~-----p~ 245 (335)
+++|++..++++.+++|.+.++||||+||+||++|+++||++||+||||+++|+|+ +|+||++++|+++|.+ |+
T Consensus 158 ~~~f~~~~gv~~~~~N~~~si~RiAr~AF~~A~~r~~~Vt~v~KaNILK~tdg~f~-if~eVa~~eyk~~f~~~~~~~p~ 236 (393)
T PLN00096 158 DRTITDDLNAVVTYHNPLDNVHHLARIFFGRCLDAGIVPYVVTKKTVFKWQEPFWE-IMKKVFDEEFKSKFVDKGVMKSG 236 (393)
T ss_pred EEecCCCCeEEEEeccCHHHHHHHHHHHHHHHHHhCCcEEEEeCccccccchHHHH-HHHHHHHHHHhhhhhhcccCCCc
Confidence 99998557888899999999999999999999999989999999999998888776 9999986699999987 88
Q ss_pred ceEeeeeHHHHHHHHHhCCCCc-EEEeCCchhhhHHhhhhhhcCccccccccccCCC--CC-ceeeecCCCCcccccccc
Q 019837 246 IWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPD--GK-TIEAEAAHGTVTRHYRVH 321 (335)
Q Consensus 246 V~~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaA~l~GslGlapSanig~~--~~-~~~fEp~HGSAPdiagk~ 321 (335)
|+++|+|||+|+||||++|++| ||||+|||||||||++|+++|||||+||+|+|++ +. ++||||+|||||||||+|
T Consensus 237 V~~e~~lIDa~~~qlVk~P~~fdViv~~NlfGDIlSDlaA~l~GsLGl~pSanig~d~dg~~~a~fEp~HGSApdiag~~ 316 (393)
T PLN00096 237 DELVHLLSDAATMKLVVWTDGGFGMAAHNYDGDVLTDELAQVHKSPGFITSNLVGVDENGTLIKEFEASHGTVTDMDEAR 316 (393)
T ss_pred eEEEeeeHHHHHHHHHhCcccCCEEEECcccchHHHHHHHHhcCCcccccccccCCccCCccceEEEcCCCChHHhhhhh
Confidence 9999999999999999999999 9999999999999999999999999999999954 52 389999999999999999
Q ss_pred cCCCC-CCCCccccC
Q 019837 322 QKDDQ-GSCTYYPWI 335 (335)
Q Consensus 322 ~aGk~-~~aNP~a~I 335 (335)
++||+ + |||+|+|
T Consensus 317 ~~Gk~~~-ANPiA~I 330 (393)
T PLN00096 317 LRGEETS-LNPLGMV 330 (393)
T ss_pred hcCCCCc-cChHHHH
Confidence 99996 6 9999987
No 28
>COG0538 Icd Isocitrate dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=2.7e-78 Score=580.06 Aligned_cols=304 Identities=33% Similarity=0.427 Sum_probs=273.2
Q ss_pred cEEEECCCCchHHHHHHHHHHHh----cCC---CceEEEEEecchhhhhccCCcccHHHHHHHHhcCeeeecCCCCCCcc
Q 019837 11 PIVEMDGDEMTRVFWKSIKDKLI----FPF---LELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEA 83 (335)
Q Consensus 11 ~I~vipGDGIGpEv~~~~~~~~~----~~~---~~i~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~lkg~~~~p~~~ 83 (335)
-|-+|.|||||||+++++.+++. .++ .+|+|.++++|.++++.||++||+||+++++++.+.+|||++||.+
T Consensus 20 iiP~IegDgiG~eit~~~~kvi~aav~k~Y~g~~~I~w~e~~aG~ka~d~tg~~lp~etl~aikky~VaIKgpl~TPvg- 98 (407)
T COG0538 20 IIPFIEGDGIGDEITRAIWKVIDAAVEKAYGGERKIEWKEVDAGEKARDKTGDQLPIETLEAIKKYGVAIKGPLTTPVG- 98 (407)
T ss_pred ccceEecCCCcHHHHHHHHHHHHHHHHhhcCCcceeEEEEEecchHHHHhhcCcCCHHHHHHHHHhCEEeeccccCccc-
Confidence 46699999999999999996543 334 8999999999999999999999999999999999999999999954
Q ss_pred hhhHHHhhhcCCCcchhHhhhcCceEEeecccc-cCCCCCCCC-CCCCEEEEeeccCccccccceeeeCCCceeeeeecC
Q 019837 84 RVKEFVLKQMWKSPNGTIRNILNGTVFREPIIC-KNVPRLIPG-WTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPE 161 (335)
Q Consensus 84 ~~~~~~l~~~~~s~~~~LRk~ldlyanvRPv~~-~~~~~~~~~-~~~divivREnteg~Y~g~e~~~~~~g~~~~~~~~~ 161 (335)
++|+|+|++||+.||||+|+|||++ +++|++.+. |..|+||+|||||++|.|+||....++..++.+..+
T Consensus 99 --------~g~rSlNvtlRq~Ldly~~~rPv~y~~gvPspvk~pe~~dmVIfRenteDiYagiE~~~~s~~a~kl~~fl~ 170 (407)
T COG0538 99 --------KGWRSLNVTLRQILDLYVFRRPVRYFPGVPSPVKRPEKVDMVIFRENTEDIYAGIEWKAGSPEALKLIFFLE 170 (407)
T ss_pred --------ccccCchHHHHHHcCceEeeeeEEecCCCCCCCCCcccCCeEEEeccccchhheeeeccCCcchhhhhhhhh
Confidence 5899999999999999999999997 599987776 789999999999999999999988888777765554
Q ss_pred CCCccchhhhccccCccceeeeeeeCHHHHHHHHHHHHHHHHhCC-CCEEEEeCCCcccccchhHHHHHHHHHHhh----
Q 019837 162 GKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKK-WPLYLSTKNTILKKYDGRFKDIFQEVYEAN---- 236 (335)
Q Consensus 162 ~g~~~~~~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r~-k~Vt~v~KaNVl~~~~g~f~~~~~eva~~e---- 236 (335)
++ ..++.++|+.++++...+ ||++++.|++|.||+||.+++ +.||++||.||||.|+|.|+++++|||+++
T Consensus 171 ~e---~~~~~i~~pe~~GIgikp-~s~~~s~Rlvr~ai~yAi~~~r~~VtlvhKgnImK~teGaFkdw~yeva~~~ef~~ 246 (407)
T COG0538 171 DE---MGVKKIRFPEDSGIGIKP-ISKEGSIRLVRAAIEYAIENKRKSVTLVHKGNIMKFTEGAFKDWGYEVAEEEEFGD 246 (407)
T ss_pred cc---cccceEecCCCCceEEEe-cCchhhHHHHHHHHHHHHHcCCceEEEEecCeeeecccchHHHHHHHHHhhhcccc
Confidence 43 224667888777887554 899999999999999999998 689999999999999999999999999763
Q ss_pred ----hhccccCCC----ceEeeeeHHHHHHHHHhCCCCc-EEEeCCchhhhHHhhhhhhcCccccccccccCCCCCceee
Q 019837 237 ----WKSKFEAAG----IWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEA 307 (335)
Q Consensus 237 ----Y~~~~~~p~----V~~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaA~l~GslGlapSanig~~~~~~~f 307 (335)
|+..|...+ |.++|.++|+|.+|++++|+.| ||+|.||.||++||.+|+++|||||+||+||| ++ +++|
T Consensus 247 ~~~~~~~~~~~~~~~gkI~~~driaD~mlqQil~r~~eydViA~~NlnGDy~SDa~Aa~vGglGi~pgani~-~~-~~~f 324 (407)
T COG0538 247 EVVTGKEKFELKGPKGKIVYKDRIADDMLQQILLRPGEYDVIATKNLNGDYISDALAAQVGGLGLAPGANIG-DG-TAEF 324 (407)
T ss_pred cccccchhhhccCcCceEEEehhhHHHHHHHHhcCCCCceEEEeccCCccHHHHHHHHhcCCccccccceec-Cc-eEEE
Confidence 566677778 9999999999999999999999 99999999999999999999999999999999 55 6999
Q ss_pred ecCCCCcccccccccCCCCCCCCccccC
Q 019837 308 EAAHGTVTRHYRVHQKDDQGSCTYYPWI 335 (335)
Q Consensus 308 Ep~HGSAPdiagk~~aGk~~~aNP~a~I 335 (335)
||+|||||++| |++. +||+|.|
T Consensus 325 EA~HGTapk~a-----G~~~-~Np~a~I 346 (407)
T COG0538 325 EATHGTAPKYA-----GKDS-TNPIASI 346 (407)
T ss_pred EeccCcccccc-----CcCC-CCcHHHH
Confidence 99999999997 5565 9999976
No 29
>KOG0784 consensus Isocitrate dehydrogenase, gamma subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=6.5e-72 Score=528.58 Aligned_cols=271 Identities=19% Similarity=0.182 Sum_probs=242.1
Q ss_pred cccEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecchhhhhccCCcccHHHHHHHHhcCeeeecCCCCCCcchhhHH
Q 019837 9 ANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEF 88 (335)
Q Consensus 9 ~~~I~vipGDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~lkg~~~~p~~~~~~~~ 88 (335)
.++|++|||||||||++.++.+++.+..++++|+++++++. .+.++..++|++++++++++.|||-+-||...
T Consensus 42 ~~tVTlipGdGIGpe~~~~V~~v~~a~~~PV~fE~i~v~~~--~~~~~~~~~e~v~Si~rNkValkG~i~t~~~~----- 114 (375)
T KOG0784|consen 42 RHTVTLIPGDGIGPELTNAVREVFSAAHAPVEFEEIEVSGS--NKESSEDLDEAVESIKRNKVALKGNIETPDLP----- 114 (375)
T ss_pred cceEEEeCCCCcCHHHHHHHHHHHHhcCCCeeEEEEEccCC--ccccchhHHHHHHHHHhcceeEeecccCCCCc-----
Confidence 37899999999999999999987777889999999999872 22345578999999999999999999998321
Q ss_pred HhhhcCCCcchhHhhhcCceEEeecccccCCCCCCCCC-CCCEEEEeeccCccccccceeeeCCCceeeeeecCCCCccc
Q 019837 89 VLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGW-TKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKT 167 (335)
Q Consensus 89 ~l~~~~~s~~~~LRk~ldlyanvRPv~~~~~~~~~~~~-~~divivREnteg~Y~g~e~~~~~~g~~~~~~~~~~g~~~~ 167 (335)
.+..|.|+.||++||||||+--+ +++||+++.+ ++||+|+||||||+|++.||+.+ ||
T Consensus 115 ---g~~~s~n~~LR~~LDLyanvv~~--~slpG~~tRh~~vDiviIRENTEGEYs~LEHE~V-pG--------------- 173 (375)
T KOG0784|consen 115 ---GGAKSLNVKLRKELDLYANVVHC--KSLPGVKTRHENVDIVIIRENTEGEYSGLEHESV-PG--------------- 173 (375)
T ss_pred ---cchhhhHHHHHHhhhhhhheeee--eccCCcccccCCccEEEEecCCcccccccccccC-cc---------------
Confidence 35678999999999999999875 9999998876 57999999999999999999864 44
Q ss_pred hhhhccccCccceeee-eeeCHHHHHHHHHHHHHHHHhCC-CCEEEEeCCCcccccchhHHHHHHHHHHhhhhccccCCC
Q 019837 168 ELEVYNFTGEGGVALS-MYNTDESIRAFAEASMNTAYQKK-WPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAG 245 (335)
Q Consensus 168 ~~~~~~~~~~~~~~~~-~~~T~~~~eRiar~AFe~A~~r~-k~Vt~v~KaNVl~~~~g~f~~~~~eva~~eY~~~~~~p~ 245 (335)
++++ +++|++.+||||||||+||.+++ ||||+|||||+||.+||+|+++|+||++ .| |+
T Consensus 174 ------------VVEsLKVvT~~kseRIaryAF~yA~k~gRKkVTaVHKAnimKL~DGlFle~~~eva~-~Y------p~ 234 (375)
T KOG0784|consen 174 ------------VVESLKVVTRFKSERIARYAFEYAKKNGRKKVTAVHKANIMKLGDGLFLESCQEVAK-KY------PD 234 (375)
T ss_pred ------------hhheeeeehhhhhHHHHHHHHHHHHHhCCceEEEEeccCceecchhhHHHHHHHHHh-cC------CC
Confidence 3444 68999999999999999999997 7899999999999999999999999994 79 99
Q ss_pred ceEeeeeHHHHHHHHHhCCCCc-EEEeCCchhhhHHhhhhhhcCccccccccccCCCCCceeeec--CCCCccccccccc
Q 019837 246 IWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEA--AHGTVTRHYRVHQ 322 (335)
Q Consensus 246 V~~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaA~l~GslGlapSanig~~~~~~~fEp--~HGSAPdiagk~~ 322 (335)
|+++.++||++|||||++|++| |+|+|||||.|||.+||+|+||.|+.|++|+|++ +++||| .|++ -++
T Consensus 235 I~~e~miVDN~~MQlvs~P~qFDvmv~pnlYgniisNiaaGlvGG~Glv~G~n~G~~--yAVFE~g~r~~~-~~~----- 306 (375)
T KOG0784|consen 235 ITFEEMIVDNACMQLVSRPQQFDVMVMPNLYGNIISNIAAGLVGGAGLVSGANYGDD--YAVFEPGARHTG-TSI----- 306 (375)
T ss_pred ccHHHhhHHHhHHHhhcCchheeeEechHHHHHHHHHHHHHhcCCCCcccccccccc--eEEecccccccc-hhh-----
Confidence 9999999999999999999999 9999999999999999999999999999999977 599999 4665 345
Q ss_pred CCCCCCCCccccC
Q 019837 323 KDDQGSCTYYPWI 335 (335)
Q Consensus 323 aGk~~~aNP~a~I 335 (335)
+||++ |||+|||
T Consensus 307 ~g~~~-aNPtA~l 318 (375)
T KOG0784|consen 307 AGKNI-ANPTAML 318 (375)
T ss_pred hcccc-cCcHHHH
Confidence 47787 9999986
No 30
>KOG0786 consensus 3-isopropylmalate dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=6.4e-71 Score=505.22 Aligned_cols=276 Identities=20% Similarity=0.163 Sum_probs=237.3
Q ss_pred cccEEEECCCCchHHHHHHHHHHHhcC----CCceEEEEEecchhhhhccCCcccHHHHHHHHhcCeeeecCCCCCCc--
Q 019837 9 ANPIVEMDGDEMTRVFWKSIKDKLIFP----FLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDE-- 82 (335)
Q Consensus 9 ~~~I~vipGDGIGpEv~~~~~~~~~~~----~~~i~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~lkg~~~~p~~-- 82 (335)
.|+|+++|||||||||+..+.+++.+. +++|+|++.++|+++.+.+|.+||+||+.+.+++|++|+|+++.+..
T Consensus 4 ~~~i~llpgd~ig~ev~s~a~~vlq~~~~l~~vefdf~~~~iggaald~~gvplpeet~~aak~sdavllgaigg~kw~~ 83 (363)
T KOG0786|consen 4 RYNITLLPGDGIGPEVISVAKNVLQKAGSLEGVEFDFEEMPIGGAALDLVGVPLPEETLTAAKKSDAVLLGAIGGYKWDK 83 (363)
T ss_pred cceEEEcCCCCcCHHHHHHHHHHHHHhccccceeeccccCcccccchhccCCCCCHHHHhhhhhcceeEeecccCcccCc
Confidence 489999999999999999999766544 58999999999999999999999999999999999999999987631
Q ss_pred --chhhHHHhhhcCCCcchhHhhhcCceEEeecccccCCCCC------CCCC--CCCEEEEeeccCccccccceeeeCCC
Q 019837 83 --ARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRL------IPGW--TKPICIGRHAFGDQYRATDTVIQGPG 152 (335)
Q Consensus 83 --~~~~~~~l~~~~~s~~~~LRk~ldlyanvRPv~~~~~~~~------~~~~--~~divivREnteg~Y~g~e~~~~~~g 152 (335)
.+ +|.+| +.||+.|.+|||+||+. -+|.+ ++.. +.|++||||.|+|+|+|.....
T Consensus 84 ~~lr-pe~gl--------l~ir~~lkvfanlrp~~--~~~qlvd~s~lk~e~aeg~d~mvvrel~ggiyfge~r~e---- 148 (363)
T KOG0786|consen 84 NHLR-PEMGL--------LKIRRDLKVFANLRPAT--VLPQLVDASTLKKEVAEGVDMMVVRELTGGIYFGEPRNE---- 148 (363)
T ss_pred CCcC-hhhhH--------HHHHHHHHHHhcCCcch--hhHhhhccccccHHHhcCcceEEeeeecCceeecCcccC----
Confidence 12 23343 69999999999999974 33332 2222 5799999999999999953211
Q ss_pred ceeeeeecCCCCccchhhhccccCccceeeeeeeCHHHHHHHHHHHHHHHHhCC--CCEEEEeCCCcccccchhHHHHHH
Q 019837 153 KLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKK--WPLYLSTKNTILKKYDGRFKDIFQ 230 (335)
Q Consensus 153 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r~--k~Vt~v~KaNVl~~~~g~f~~~~~ 230 (335)
+| +..++.+.+|+-.++.||+|.||+.|++|+ .++|++||+|||. ++-+||+.+.
T Consensus 149 ---------ng-------------~gva~dte~Ya~~Ev~RIaR~Aa~~A~~~~pp~pl~slDKANVLa-aSrLWRKtV~ 205 (363)
T KOG0786|consen 149 ---------NG-------------EGVAFDTEIYAAHEVDRIARVAAETARKRRPPGPLCSLDKANVLA-ASRLWRKTVT 205 (363)
T ss_pred ---------CC-------------cceeeccccccHHHHHHHHHHHHHHHHhhCCCCCccccchhhHHH-HHHHHHHHHH
Confidence 11 123455789999999999999999999997 7999999999998 6889998887
Q ss_pred HHHHhhhhccccCCCceEeeeeHHHHHHHHHhCCCCc--EEEeCCchhhhHHhhhhhhcCccccccccccC-----CCCC
Q 019837 231 EVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGY--VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVC-----PDGK 303 (335)
Q Consensus 231 eva~~eY~~~~~~p~V~~~~~~VDa~~~~lv~~P~~F--Viv~~NlfGDILSDlaA~l~GslGlapSanig-----~~~~ 303 (335)
+..+.|| |++++.|+|||+++|+||++|.+| +|||.|+|||||||+++.+.|||||.|||+++ ..+
T Consensus 206 ~~~k~Ey------P~l~l~hqliDsAAM~Lvk~P~~lng~ivT~NiFGDIiSDEASvIpGSlGlLPSASLs~v~~~es~- 278 (363)
T KOG0786|consen 206 KALKSEY------PDLELSHQLIDSAAMQLVKDPKQLNGTIVTNNIFGDIISDEASVIPGSLGLLPSASLSGVVSEESG- 278 (363)
T ss_pred HHHHhhC------CCcchhhhhhhHHHHHHhcCchhcCceEEeccchhhhhccccccccCccccccchhhcCCcccccC-
Confidence 6666799 999999999999999999999999 99999999999999999999999999999998 333
Q ss_pred ceeeecCCCCcccccccccCCCCCCCCccccC
Q 019837 304 TIEAEAAHGTVTRHYRVHQKDDQGSCTYYPWI 335 (335)
Q Consensus 304 ~~~fEp~HGSAPdiagk~~aGk~~~aNP~a~I 335 (335)
+++|||+|||||||| ||++ +||+|+|
T Consensus 279 ~gL~EPiHGSAPDia-----gk~k-vNPlaTI 304 (363)
T KOG0786|consen 279 PGLFEPIHGSAPDIA-----GKDK-VNPLATI 304 (363)
T ss_pred CcccccCCCCCCCcC-----CCCc-cChHHHH
Confidence 799999999999997 5565 9999986
No 31
>KOG1526 consensus NADP-dependent isocitrate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=2e-62 Score=458.35 Aligned_cols=334 Identities=76% Similarity=1.263 Sum_probs=321.1
Q ss_pred CCCccccccccEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecchhhhhccCCcccHHHHHHHHhcCeeeecCCCCC
Q 019837 1 MAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITP 80 (335)
Q Consensus 1 ~~~~~~~m~~~I~vipGDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~lkg~~~~p 80 (335)
++|+|||+.+||+.+.||.+.+-||+...+.++-+++++++.+||+|.+++++|.++++-++.++++++++++||++.||
T Consensus 10 ~~~~kikv~~pvVemdGDEmTRiIW~~Ik~KLIlPyldldlkyyDLgie~RD~T~DqVTid~A~A~lky~V~iKCATITP 89 (422)
T KOG1526|consen 10 SGMSKIKVANPVVEMDGDEMTRIIWKLIKEKLILPYLDLDLKYYDLGIENRDATNDQVTIDAAEAILKYNVGIKCATITP 89 (422)
T ss_pred chhceeeccCCeEEecccHHHHHHHHHHHhhcccceeeeceeeeecCCcccccccceeeHHHHHHHHHhCceeEEeecCC
Confidence 46899999999999999999999999999888889999999999999999999999999999999999999999999999
Q ss_pred CcchhhHHHhhhcCCCcchhHhhhcCceEEeecccccCCCCCCCCCCCCEEEEeeccCccccccceeeeCCCceeeeeec
Q 019837 81 DEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVP 160 (335)
Q Consensus 81 ~~~~~~~~~l~~~~~s~~~~LRk~ldlyanvRPv~~~~~~~~~~~~~~divivREnteg~Y~g~e~~~~~~g~~~~~~~~ 160 (335)
+..+.+||.|.+.|+|||.+||..|+..++..|+.|+++|.+.|+|..||+|-|+.-++.|...++++.++|.++..|.+
T Consensus 90 DEaRv~Ef~LkkMWkSPNGTIRNILgGTVFREpIi~kniPrlVpgW~kPI~IGRHAfgDQYkatD~vv~~~gkl~l~f~~ 169 (422)
T KOG1526|consen 90 DEARVEEFNLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPIIIGRHAFGDQYKATDFVVPGPGKLELVFTP 169 (422)
T ss_pred cHHHHHHhhhHHHhcCCCcchhhhcCceeeccceecCCcccccCCCccceEEeeccccccceeeeEeecCCCeEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccchhhhccccCccceeeeeeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchhHHHHHHHHHHhhhhcc
Q 019837 161 EGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSK 240 (335)
Q Consensus 161 ~~g~~~~~~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r~k~Vt~v~KaNVl~~~~g~f~~~~~eva~~eY~~~ 240 (335)
.+|....+..+++|++ ++++..+.+|.+.++-+|+.+|+||.+++.++++.+|-+|||.|||.|.++|+|+++++||++
T Consensus 170 ~dg~~~~~~~V~~f~~-~G~~~~m~~~dds~~~FAhssf~~Al~kk~pLylsTKNTILKkYDgrFKdiFqeiye~~yk~k 248 (422)
T KOG1526|consen 170 SDGTQKVTLKVYDFKG-SGVAAMMYNTDDSIRGFAHSSFQYALQKKWPLYLSTKNTILKKYDGRFKDIFQEIYEKQYKSK 248 (422)
T ss_pred CCCCcceeEEEEecCC-CceeEEEeeccchhhHHHHHHHHHHHHhcCceeeeccchHHHHhCChHHHHHHHHHHHHHHHH
Confidence 8887666778899987 567767889999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCceEeeeeHHHHHHHHHhCCCCcEEEeCCchhhhHHhhhhhhcCccccccccccCCCCCceeeecCCCCccccccc
Q 019837 241 FEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRV 320 (335)
Q Consensus 241 ~~~p~V~~~~~~VDa~~~~lv~~P~~FViv~~NlfGDILSDlaA~l~GslGlapSanig~~~~~~~fEp~HGSAPdiagk 320 (335)
|++-.|+|+|.+||+|.+|.+++-+.|||.|.|+.||+-||+.||-.|||||+.|..+.||++..--|+.|||...+..+
T Consensus 249 fe~~~IwYEHRLIDDmVAqa~KS~GGfvwAcKNYDGDVqSD~vAQg~GSLGlMTSVLv~pdGKT~EaEAAHGTVtRHyr~ 328 (422)
T KOG1526|consen 249 FEALGIWYEHRLIDDMVAQAMKSEGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSVLVCPDGKTVEAEAAHGTVTRHYRM 328 (422)
T ss_pred HHhhcchhhhhhHHHHHHHHHhcCCceEEEeecCCCchhhhHHHhcccchhhheeEEEcCCCCeeeeeccccchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999766778999999999999
Q ss_pred ccCCCCCCCCccccC
Q 019837 321 HQKDDQGSCTYYPWI 335 (335)
Q Consensus 321 ~~aGk~~~aNP~a~I 335 (335)
|+.|+..+.||||+|
T Consensus 329 hqkG~eTSTN~IASI 343 (422)
T KOG1526|consen 329 HQKGQETSTNSIASI 343 (422)
T ss_pred HhcCCCccCcchHHH
Confidence 999999999999986
No 32
>TIGR00127 nadp_idh_euk isocitrate dehydrogenase, NADP-dependent, eukaryotic type. This model does not discriminate cytosolic, mitochondrial, and chloroplast proteins. However, the model starts very near the amino end of the cytosolic form; the finding of additional amino-terminal sequence may indicate a transit peptide.
Probab=90.90 E-value=0.13 Score=52.06 Aligned_cols=21 Identities=10% Similarity=0.094 Sum_probs=18.8
Q ss_pred CCCEEEEeecc-Ccccccccee
Q 019837 127 TKPICIGRHAF-GDQYRATDTV 147 (335)
Q Consensus 127 ~~divivREnt-eg~Y~g~e~~ 147 (335)
.+|++|+|||| ||+|+|.++.
T Consensus 140 ~iD~vivREnt~Eg~Y~g~e~~ 161 (409)
T TIGR00127 140 ATDFVVPGPGKLELVYKPKDGT 161 (409)
T ss_pred ceEEEEecCCeeeEEEECCCCC
Confidence 47999999999 9999998863
No 33
>PF04166 PdxA: Pyridoxal phosphate biosynthetic protein PdxA; InterPro: IPR005255 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents 4-hydroxythreonine-4-phosphate dehydrogenase (PdxA, 1.1.1.262 from EC). PdxA takes part in vitamin B6 biosynthesis, forming pyridoxine 5'-phosphate from 4-(phosphohydroxy)-L-threonine and 1-deoxy-D-xylulose-5-phosphate.; GO: 0050570 4-hydroxythreonine-4-phosphate dehydrogenase activity, 0051287 NAD binding, 0008615 pyridoxine biosynthetic process, 0055114 oxidation-reduction process; PDB: 1YXO_A 1PS6_A 1PS7_C 1PTM_B 1R8K_B 2HI1_A 3LXY_A 3TSN_B.
Probab=86.19 E-value=0.23 Score=48.22 Aligned_cols=133 Identities=18% Similarity=0.072 Sum_probs=63.4
Q ss_pred eeeCHHHHHHHHHHHHHHHHhC-C--CCEEEEeCCCcccccchhH-HHHHHHHHH--hhhhccccCCCceEe-eeeHHHH
Q 019837 184 MYNTDESIRAFAEASMNTAYQK-K--WPLYLSTKNTILKKYDGRF-KDIFQEVYE--ANWKSKFEAAGIWYE-HRLIDDM 256 (335)
Q Consensus 184 ~~~T~~~~eRiar~AFe~A~~r-~--k~Vt~v~KaNVl~~~~g~f-~~~~~eva~--~eY~~~~~~p~V~~~-~~~VDa~ 256 (335)
..+|.+.+.+.++...+.-++. + ++-..|-==|==..-.|+| +|.-+.+.. ++-+ +.++.+. -.=.|.+
T Consensus 150 ~~it~~~i~~~i~~~~~~l~~~~gi~~PrIaV~gLNPHaGe~G~~G~EE~~~I~PAI~~~~----~~gi~v~GP~paDt~ 225 (298)
T PF04166_consen 150 KLITKERILEKIRLLHKSLKRDFGIENPRIAVAGLNPHAGEGGLFGREEIEIIIPAIEEAR----AEGIDVFGPYPADTV 225 (298)
T ss_dssp HH--HHHHHHHHHHHHHHHHHTTT-SS-EEEEE-SSGGGGTTTTTBSHHHHTHHHHHHHHH----HTTHEEEEEE-HHHH
T ss_pred HhcCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCcHhHHHHHHHHHHHHH----hCCCceECCCccHHh
Confidence 4588888888888877665552 2 3322222223222225666 333322210 0110 1566655 4445655
Q ss_pred HHHHHhCCCCc-EEEeCCchhhhHHhhhhhhcCccccccccccCCCCCc-eeeecCCCCcccccccccCCCCCCCCcccc
Q 019837 257 VAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKT-IEAEAAHGTVTRHYRVHQKDDQGSCTYYPW 334 (335)
Q Consensus 257 ~~~lv~~P~~F-Viv~~NlfGDILSDlaA~l~GslGlapSanig~~~~~-~~fEp~HGSAPdiagk~~aGk~~~aNP~a~ 334 (335)
-.+- .-++| ++|| || =|++-.=.=-|++--+.|+- -|.+ ---=|.||||-||| |||+ |||.+|
T Consensus 226 F~~~--~~~~fD~vva--MY----HDQGlip~K~l~f~~gVnvT-lGLP~iRTS~DHGTAfDIA-----Gkg~-A~~~s~ 290 (298)
T PF04166_consen 226 FGKA--NRGKFDAVVA--MY----HDQGLIPFKLLGFDEGVNVT-LGLPIIRTSPDHGTAFDIA-----GKGI-ADPSSM 290 (298)
T ss_dssp TSHH--HHTT-SEEEE--SS----HHHHHHHHHHHCTTTSEEEE-ESSSSEEEEESS-S-CCGT-----TTTT-S-THHH
T ss_pred hhcc--hhccCCEEEE--ee----cccCccceeecccccceEEe-cCCCeeeecCCCCchhhhh-----CCCC-CChHHH
Confidence 4433 33567 6666 34 34543333344444566663 1112 23367899999997 5566 999887
Q ss_pred C
Q 019837 335 I 335 (335)
Q Consensus 335 I 335 (335)
+
T Consensus 291 ~ 291 (298)
T PF04166_consen 291 I 291 (298)
T ss_dssp H
T ss_pred H
Confidence 4
No 34
>COG1995 PdxA Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=82.99 E-value=0.39 Score=47.11 Aligned_cols=48 Identities=21% Similarity=0.047 Sum_probs=30.0
Q ss_pred hhhhhhcCccccccccccCCCCCc-eeeecCCCCcccccccccCCCCCCCCccccC
Q 019837 281 DFLAQGFGSLGLMTSVLVCPDGKT-IEAEAAHGTVTRHYRVHQKDDQGSCTYYPWI 335 (335)
Q Consensus 281 DlaA~l~GslGlapSanig~~~~~-~~fEp~HGSAPdiagk~~aGk~~~aNP~a~I 335 (335)
|++---.==+|+--|.||.-. .+ .--=|-||||-||| |||+ |||.+++
T Consensus 268 DQgliplK~l~Fd~~VNvtlG-LPfiRTS~DHGTAfDiA-----gkGi-A~~~S~~ 316 (332)
T COG1995 268 DQGLIPLKYLGFDRGVNVTLG-LPFIRTSVDHGTAFDIA-----GKGI-ADPGSLI 316 (332)
T ss_pred cccchhhhhhccccceEEecC-CCeeeecCCccchhhhh-----cCCc-CCchHHH
Confidence 344334444566667787522 12 23357899999997 5565 9998764
No 35
>PRK00232 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed
Probab=82.48 E-value=0.4 Score=47.32 Aligned_cols=131 Identities=15% Similarity=0.047 Sum_probs=69.6
Q ss_pred eeeCHHHHHHHHHHHHHHHHhCC--C-CEE-EEeCCCcccccchhH-HHHHHHHHH--hhhhccccCCCceEe-eeeHHH
Q 019837 184 MYNTDESIRAFAEASMNTAYQKK--W-PLY-LSTKNTILKKYDGRF-KDIFQEVYE--ANWKSKFEAAGIWYE-HRLIDD 255 (335)
Q Consensus 184 ~~~T~~~~eRiar~AFe~A~~r~--k-~Vt-~v~KaNVl~~~~g~f-~~~~~eva~--~eY~~~~~~p~V~~~-~~~VDa 255 (335)
..+|.+.+.+.++.+.+.-++.+ + |+. +.-....=. .|+| +|..+.+.- ++.+. .++.++ -.=.|.
T Consensus 177 ~~it~e~i~~~i~~~~~~l~~~gi~~PrIaV~gLNPHAGE--~G~~G~EE~~iI~PAI~~~~~----~G~~v~GP~paDt 250 (332)
T PRK00232 177 DAITPERLEEVIRILHADLRRKGIAEPRIAVCGLNPHAGE--GGHFGREEIDIIIPALEELRA----EGINLVGPLPADT 250 (332)
T ss_pred HHhCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeeCCCCCC--CCCCCHHHHHHHHHHHHHHHh----CCCCcCCCCCchh
Confidence 45889999988888877655333 2 232 222222222 5677 443333210 11111 223322 334455
Q ss_pred HHHHHHhCCCCc-EEEeCCchhhhHHhhhhhhcCccccccccccCCCCCceee-ecCCCCcccccccccCCCCCCCCccc
Q 019837 256 MVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEA-EAAHGTVTRHYRVHQKDDQGSCTYYP 333 (335)
Q Consensus 256 ~~~~lv~~P~~F-Viv~~NlfGDILSDlaA~l~GslGlapSanig~~~~~~~f-Ep~HGSAPdiagk~~aGk~~~aNP~a 333 (335)
+..+-.+ +.| ++||- | =|++--=.=.+++--+.|+- -+.+.+- =|-||||-||| |||+ |||.+
T Consensus 251 ~F~~~~~--~~~D~vvaM--Y----HDQGliP~K~l~F~~gVNvT-lGLPiiRTS~DHGTAfDIA-----Gkg~-A~~~S 315 (332)
T PRK00232 251 LFQPAYL--GDADAVLAM--Y----HDQGLPVLKYLGFGRGVNIT-LGLPFIRTSVDHGTALDLA-----GKGI-ADVGS 315 (332)
T ss_pred hcccccc--CCCCEEEEC--c----ccccchhheecccCcceEEe-cCCCeeEeCCCCcchhhhh-----cCCC-CCHHH
Confidence 4444333 467 66663 3 24544444455666677774 1222232 57899999997 5566 99988
Q ss_pred cC
Q 019837 334 WI 335 (335)
Q Consensus 334 ~I 335 (335)
|+
T Consensus 316 ~~ 317 (332)
T PRK00232 316 FI 317 (332)
T ss_pred HH
Confidence 74
No 36
>PRK03371 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 2; Provisional
Probab=82.33 E-value=0.41 Score=47.07 Aligned_cols=131 Identities=13% Similarity=0.036 Sum_probs=70.6
Q ss_pred eeeCHHHHHHHHHHHHHHHHhCC--C-CE-EEEeCCCcccccchhH-HHHHHHHHH--hhhhccccCCCceEe-eeeHHH
Q 019837 184 MYNTDESIRAFAEASMNTAYQKK--W-PL-YLSTKNTILKKYDGRF-KDIFQEVYE--ANWKSKFEAAGIWYE-HRLIDD 255 (335)
Q Consensus 184 ~~~T~~~~eRiar~AFe~A~~r~--k-~V-t~v~KaNVl~~~~g~f-~~~~~eva~--~eY~~~~~~p~V~~~-~~~VDa 255 (335)
..+|.+.+.+.++.+.+.-++-+ + |+ .+.-....=. .|+| +|..+.+.- ++.+. .++.++ -.=.|.
T Consensus 176 ~~it~e~i~~~i~~~~~~l~~~gi~~PrIaV~gLNPHAGE--~G~~G~EE~~iI~PAi~~~~~----~G~~v~GP~paDt 249 (326)
T PRK03371 176 DTLNTARVETVIGIADTFLKRVGYVKPRIAVAGVNPHAGE--NGLFGDEEIRIVTPAIEAMRA----KGMDVYGPCPPDT 249 (326)
T ss_pred HHhCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCCCCCC--CCCCcHHHHHHHHHHHHHHHH----CCCcccCCCCchh
Confidence 35788888888887776555222 2 22 2333334433 6778 554443321 12211 222222 334455
Q ss_pred HHHHHHhCCCCc-EEEeCCchhhhHHhhhhhhcCccccccccccCCCCCcee-eecCCCCcccccccccCCCCCCCCccc
Q 019837 256 MVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIE-AEAAHGTVTRHYRVHQKDDQGSCTYYP 333 (335)
Q Consensus 256 ~~~~lv~~P~~F-Viv~~NlfGDILSDlaA~l~GslGlapSanig~~~~~~~-fEp~HGSAPdiagk~~aGk~~~aNP~a 333 (335)
+..+-.+ ++| ++|| || =|++--=.=.+++--+.|+- -+.+-+ -=|-||||-||| |||+ |||.+
T Consensus 250 ~F~~~~~--~~~D~vva--MY----HDQGliP~K~l~F~~gVNvT-lGLP~iRTS~DHGTAfDIA-----GkG~-A~~~S 314 (326)
T PRK03371 250 VFLQAYE--GQYDMVVA--MY----HDQGHIPLKLLGFYDGVNIT-AGLPFIRTSADHGTAFDIA-----WTGK-AKSES 314 (326)
T ss_pred hcccccc--cCCCEEEE--cc----ccccchhheecccccceEEe-cCCCeeEecCCCCchhhhh-----cCCc-CCHHH
Confidence 4433333 468 6666 33 24554445556666677773 122222 257899999997 5565 99988
Q ss_pred cC
Q 019837 334 WI 335 (335)
Q Consensus 334 ~I 335 (335)
|+
T Consensus 315 ~~ 316 (326)
T PRK03371 315 MA 316 (326)
T ss_pred HH
Confidence 74
No 37
>PRK03946 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=81.67 E-value=0.44 Score=46.51 Aligned_cols=130 Identities=12% Similarity=-0.022 Sum_probs=69.3
Q ss_pred eeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchhH-HHHHHHHHH--hhhhccccCCCceEe--eeeHHHHHH
Q 019837 184 MYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRF-KDIFQEVYE--ANWKSKFEAAGIWYE--HRLIDDMVA 258 (335)
Q Consensus 184 ~~~T~~~~eRiar~AFe~A~~r~k~Vt~v~KaNVl~~~~g~f-~~~~~eva~--~eY~~~~~~p~V~~~--~~~VDa~~~ 258 (335)
..+|.+.+.+.++.+.+.-+ ..|-..+.-....=. .|+| +|.. .+.- ++.++ +-++..+ -.=.|.+..
T Consensus 157 ~~it~~~i~~~i~~~~~~l~-~PrIaV~gLNPHAGE--~G~~G~EE~-iI~PAi~~~~~---~~g~~~~~GP~paDt~F~ 229 (307)
T PRK03946 157 QLIKVKKLVKFLLDFYKSTK-FKKIGVLGLNPHAGD--NGVIGGEEE-EIKKAIKKANQ---FLGFEIFFGPLVPDSAFT 229 (307)
T ss_pred HHhCHHHHHHHHHHHHHHhc-CCCEEEEeeCCCCCC--CCCCCcchH-HHHHHHHHHHH---hcCCCcccCCcCchhhcc
Confidence 35788888888877766433 333233333333332 5667 4322 2210 11110 0134333 455566544
Q ss_pred HHHhCCCCc-EEEeCCchhhhHHhhhhhhcCccccccccccCCCCCceee-ecCCCCcccccccccCCCC-CCCCccccC
Q 019837 259 YALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEA-EAAHGTVTRHYRVHQKDDQ-GSCTYYPWI 335 (335)
Q Consensus 259 ~lv~~P~~F-Viv~~NlfGDILSDlaA~l~GslGlapSanig~~~~~~~f-Ep~HGSAPdiagk~~aGk~-~~aNP~a~I 335 (335)
+-.+ ..| ++||. | =|++--=.=.+++--+.|+- -+.+.+. =|-||||-||| ||| + |||.+|+
T Consensus 230 ~~~~--~~~D~vlaM--Y----HDQGlip~K~l~F~~gVnvT-lGLP~iRTSpDHGTAfDIA-----Gkg~~-A~~~S~~ 294 (307)
T PRK03946 230 PNKR--KKFNYYVAM--Y----HDQGLAPLKALYFDESINVS-LNLPILRTSVDHGTAFDIA-----YKNAK-ANTKSYL 294 (307)
T ss_pred cccc--cCCCEEEEC--c----cccCchhheeeccCcceEEe-cCCCEeEecCCCCchhhhc-----CCCCc-CCHHHHH
Confidence 4333 578 77763 3 24544444455666667763 1222222 57899999997 556 5 9998874
No 38
>PRK01909 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=81.21 E-value=0.47 Score=46.75 Aligned_cols=131 Identities=11% Similarity=-0.041 Sum_probs=73.3
Q ss_pred eeeCHHHHHHHHHHHHHHHHhC-C--C-CEE-EEeCCCcccccchhH-HHHHHHHHH--hhhhccccCCCceEe-eeeHH
Q 019837 184 MYNTDESIRAFAEASMNTAYQK-K--W-PLY-LSTKNTILKKYDGRF-KDIFQEVYE--ANWKSKFEAAGIWYE-HRLID 254 (335)
Q Consensus 184 ~~~T~~~~eRiar~AFe~A~~r-~--k-~Vt-~v~KaNVl~~~~g~f-~~~~~eva~--~eY~~~~~~p~V~~~-~~~VD 254 (335)
..+|.+.+.+.++.+.+.-++. + + |+- +.-....=. .|+| +|..+.+.- ++.+. .++.++ -.=.|
T Consensus 172 ~~it~e~i~~~i~l~~~~l~~~~gi~~PrIaV~GLNPHAGE--~G~~G~EE~~iI~PAi~~~~~----~Gi~v~GP~paD 245 (329)
T PRK01909 172 AALTIDGLVETLAIIDRDLRRDFGLAAPRILVTGLNPHAGE--NGYLGREEIDVIEPALARARA----AGIDARGPYPAD 245 (329)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCCCCCC--CCCCcHHHHHHHHHHHHHHHH----CCCCccCCCCch
Confidence 4589999999999988866632 2 2 332 333333333 6778 554433320 11111 233322 44456
Q ss_pred HHHHHHHhCCCCc-EEEeCCchhhhHHhhhhhhcCccccccccccCCCCCce-eeecCCCCcccccccccCCCCCCCCcc
Q 019837 255 DMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTI-EAEAAHGTVTRHYRVHQKDDQGSCTYY 332 (335)
Q Consensus 255 a~~~~lv~~P~~F-Viv~~NlfGDILSDlaA~l~GslGlapSanig~~~~~~-~fEp~HGSAPdiagk~~aGk~~~aNP~ 332 (335)
.+..+..+ +.| ++||- | =|++---.=.+++--+.|+- -+.+. --=|-||||-||| |||+ |||.
T Consensus 246 t~F~~~~~--~~~D~vvaM--Y----HDQGliP~K~l~F~~gVNvT-lGLP~iRTSvDHGTAfDIA-----Gkg~-A~~~ 310 (329)
T PRK01909 246 TLFQPRYL--EDADCVLAM--F----HDQGLPVLKYATFGEGINVT-LGLPIIRTSVDHGTALDLA-----GTGR-ADPG 310 (329)
T ss_pred hhcccccc--cCCCEEEEc--c----ccccchhheecccCcceEEe-cCCCeeEeCCCCcchhhhh-----cCCC-CCHH
Confidence 55444433 468 66663 3 24554445566666677773 12222 2257899999997 5566 9998
Q ss_pred ccC
Q 019837 333 PWI 335 (335)
Q Consensus 333 a~I 335 (335)
+|+
T Consensus 311 S~~ 313 (329)
T PRK01909 311 SMI 313 (329)
T ss_pred HHH
Confidence 874
No 39
>PRK03743 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=80.54 E-value=0.51 Score=46.55 Aligned_cols=131 Identities=15% Similarity=0.136 Sum_probs=72.2
Q ss_pred eeeCHHHHHHHHHHHHHHHHhCC--C-CE-EEEeCCCcccccchhH-HHHHHHHHH--hhhhccccCCCceEe-eeeHHH
Q 019837 184 MYNTDESIRAFAEASMNTAYQKK--W-PL-YLSTKNTILKKYDGRF-KDIFQEVYE--ANWKSKFEAAGIWYE-HRLIDD 255 (335)
Q Consensus 184 ~~~T~~~~eRiar~AFe~A~~r~--k-~V-t~v~KaNVl~~~~g~f-~~~~~eva~--~eY~~~~~~p~V~~~-~~~VDa 255 (335)
..+|.+.+.+.++.+.+.-++-+ + |+ .+.-....=. .|+| +|..+-+.- ++.+. .++.++ -.=.|.
T Consensus 177 ~~it~e~i~~~i~~~~~~l~~~gi~~PrIaV~GLNPHAGE--~G~~G~EE~~iI~PAI~~~~~----~g~~v~GP~paDt 250 (332)
T PRK03743 177 DYVTKERVLDYIQRCTKALEKLGIKNPKIAVAGLNPHSGE--HGLFGDEEVDEIIPAVEAAQE----MGINVEGPVPADS 250 (332)
T ss_pred HHhCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCCCCCC--CCCCcHHHHHHHHHHHHHHHH----CCCcccCCCCchh
Confidence 45899999999988888666322 2 23 3333334433 5777 443332210 11111 233333 344555
Q ss_pred HHHHHHhCCCCc-EEEeCCchhhhHHhhhhhhcCccccccccccCCCCCce-eeecCCCCcccccccccCCCCCCCCccc
Q 019837 256 MVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTI-EAEAAHGTVTRHYRVHQKDDQGSCTYYP 333 (335)
Q Consensus 256 ~~~~lv~~P~~F-Viv~~NlfGDILSDlaA~l~GslGlapSanig~~~~~~-~fEp~HGSAPdiagk~~aGk~~~aNP~a 333 (335)
+..+-.+ ++| ++||- | =|++-.=.=.+++--+.|+- -|.+- --=|-||||-||| |||+ |||.+
T Consensus 251 ~F~~~~~--~~~D~vvaM--Y----HDQGliP~K~l~F~~gVNvT-lGLP~iRTS~DHGTAfDIA-----Gkg~-A~~~S 315 (332)
T PRK03743 251 VFHLALQ--GRYDAVLSL--Y----HDQGHIATKTLDFERTIAIT-NGLPFLRTSVDHGTAFDIA-----GTGK-ASSVS 315 (332)
T ss_pred hcccccc--cCCCEEEEc--c----cccCChhheecccCCceEEe-cCCCeeEeCCCCcchhhhh-----cCCC-CCHHH
Confidence 4444333 468 66663 3 34554445556666677773 12222 2257899999997 5566 99988
Q ss_pred cC
Q 019837 334 WI 335 (335)
Q Consensus 334 ~I 335 (335)
|+
T Consensus 316 ~~ 317 (332)
T PRK03743 316 ME 317 (332)
T ss_pred HH
Confidence 74
No 40
>PRK02746 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=80.45 E-value=0.52 Score=46.73 Aligned_cols=135 Identities=10% Similarity=-0.044 Sum_probs=73.1
Q ss_pred eeeCHHHHHHHHHHHHHHHHhC-C--C-CEE-EEeCCCcccccchhH-HHHHHHHHH--hhhhccccCCCceEe-eeeHH
Q 019837 184 MYNTDESIRAFAEASMNTAYQK-K--W-PLY-LSTKNTILKKYDGRF-KDIFQEVYE--ANWKSKFEAAGIWYE-HRLID 254 (335)
Q Consensus 184 ~~~T~~~~eRiar~AFe~A~~r-~--k-~Vt-~v~KaNVl~~~~g~f-~~~~~eva~--~eY~~~~~~p~V~~~-~~~VD 254 (335)
..+|.+.+.+.++.+.+.-++. + + ||. +.-....-. .|+| +|..+.+.- ++.+.+- +++.++ -.=.|
T Consensus 179 ~~it~~~I~~~i~~~~~~l~~~~gi~~PrIaV~GLNPHAGE--~G~~G~EE~~iI~PAIe~~r~~g--~g~~v~GP~paD 254 (345)
T PRK02746 179 KTLTPELITSKLDLLIDFLQRDFGIEKPRIAIAGLNPHAGE--QGQLGTEEKDWLIPWLESWRQKN--PDIQLLGPIPPD 254 (345)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHcCCCCCcEEEEeeCCCCCC--CCCCcHHHHHHHHHHHHHHHhcC--CCceeeCCCCch
Confidence 3578888888888777655532 2 2 332 333333333 5777 443333210 1222110 234433 34456
Q ss_pred HHHHHHHhC------CCCc-EEEeCCchhhhHHhhhhhhcCccccccccccCCCCCceee-ecCCCCcccccccccCCCC
Q 019837 255 DMVAYALKS------EGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEA-EAAHGTVTRHYRVHQKDDQ 326 (335)
Q Consensus 255 a~~~~lv~~------P~~F-Viv~~NlfGDILSDlaA~l~GslGlapSanig~~~~~~~f-Ep~HGSAPdiagk~~aGk~ 326 (335)
.+..+-.+. .+.| ++||- | =|++-.=.=-+++--|.|+- -+.+.+. =|-||||-||| |||
T Consensus 255 t~F~~~~~~~~~~~~~~~~D~vvaM--Y----HDQGliP~K~l~F~~gVNvT-lGLP~iRTS~DHGTAfDIA-----Gkg 322 (345)
T PRK02746 255 TCWVSPAQAWYGKGVAEAPDGYLAL--Y----HDQGLIPVKLMAFDRAVNTT-IGLPFIRTSPDHGTAFDIA-----GKG 322 (345)
T ss_pred hhccccccccccccccCCCCEEEEC--c----ccCCChhheeeccCcceEEe-cCCCeeEeCCCCcchhhhh-----cCC
Confidence 665554442 2468 77763 3 24554445556666777774 1222232 57899999997 556
Q ss_pred CCCCccccC
Q 019837 327 GSCTYYPWI 335 (335)
Q Consensus 327 ~~aNP~a~I 335 (335)
+ |||.+|+
T Consensus 323 ~-A~~~S~~ 330 (345)
T PRK02746 323 I-ARPQSMK 330 (345)
T ss_pred C-CCHHHHH
Confidence 6 9998874
No 41
>TIGR00557 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase. This model represents PdxA, an NAD+-dependent 4-hydroxythreonine 4-phosphate dehydrogenase (EC 1.1.1.262) active in pyridoxal phosphate biosynthesis.
Probab=79.65 E-value=0.57 Score=45.98 Aligned_cols=131 Identities=14% Similarity=0.009 Sum_probs=69.8
Q ss_pred eeeCHHHHHHHHHHHHHHHHhC-C--C-CE-EEEeCCCcccccchhH-HHHHHHHHH--hhhhccccCCCceEe-eeeHH
Q 019837 184 MYNTDESIRAFAEASMNTAYQK-K--W-PL-YLSTKNTILKKYDGRF-KDIFQEVYE--ANWKSKFEAAGIWYE-HRLID 254 (335)
Q Consensus 184 ~~~T~~~~eRiar~AFe~A~~r-~--k-~V-t~v~KaNVl~~~~g~f-~~~~~eva~--~eY~~~~~~p~V~~~-~~~VD 254 (335)
..+|.+.+.+-++.+.+.-++. + + ++ .+.-....=. .|+| +|..+-+.. ++.+. .++.++ -.-.|
T Consensus 169 ~~it~~~i~~~i~~~~~~l~~~~gi~~PrIaV~gLNPHAGE--~G~~G~EE~~iI~PAI~~~~~----~G~~v~GP~paD 242 (320)
T TIGR00557 169 AALTPELLVEKLRILHADLRRDFGIARPRIAVAGLNPHAGE--GGHLGREEIDIIIPALEALRA----EGIDLIGPLPAD 242 (320)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCCCC--CCCCcHHHHHHHHHHHHHHHH----CCCcccCCCCch
Confidence 3588999999888888766633 2 2 33 2333333333 5677 443332210 11111 222222 23344
Q ss_pred HHHHHHHhCCCCc-EEEeCCchhhhHHhhhhhhcCccccccccccCCCCCceee-ecCCCCcccccccccCCCCCCCCcc
Q 019837 255 DMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEA-EAAHGTVTRHYRVHQKDDQGSCTYY 332 (335)
Q Consensus 255 a~~~~lv~~P~~F-Viv~~NlfGDILSDlaA~l~GslGlapSanig~~~~~~~f-Ep~HGSAPdiagk~~aGk~~~aNP~ 332 (335)
.+..+-.+ ..| ++||- | =|++-.=.=.|++--+.|+- -|.+.+- =|-||||-||| |||+ |||.
T Consensus 243 t~F~~~~~--~~~D~vvaM--Y----HDQGliP~K~l~F~~gVNvT-lGLPiiRTS~DHGTAfDIA-----Gkg~-A~~~ 307 (320)
T TIGR00557 243 TLFHPAAL--AKYDAVLAM--Y----HDQGLIPLKYLGFDEGVNVT-LGLPFIRTSPDHGTAFDIA-----GKGK-ADPG 307 (320)
T ss_pred hhcccccc--cCCCEEEEC--c----ccccchhheecccCcceEEe-cCCCeeEeCCCCcchhhhh-----cCCC-CCHH
Confidence 44333222 467 66663 3 24544444556666677774 1222232 57899999997 5566 9998
Q ss_pred ccC
Q 019837 333 PWI 335 (335)
Q Consensus 333 a~I 335 (335)
+|+
T Consensus 308 S~~ 310 (320)
T TIGR00557 308 SLI 310 (320)
T ss_pred HHH
Confidence 764
No 42
>PRK05312 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=79.57 E-value=0.57 Score=46.28 Aligned_cols=131 Identities=18% Similarity=0.074 Sum_probs=70.0
Q ss_pred eeeCHHHHHHHHHHHHHHHHhC-C--C-CEE-EEeCCCcccccchhH-HHHHHHHHH--hhhhccccCCCceEe-eeeHH
Q 019837 184 MYNTDESIRAFAEASMNTAYQK-K--W-PLY-LSTKNTILKKYDGRF-KDIFQEVYE--ANWKSKFEAAGIWYE-HRLID 254 (335)
Q Consensus 184 ~~~T~~~~eRiar~AFe~A~~r-~--k-~Vt-~v~KaNVl~~~~g~f-~~~~~eva~--~eY~~~~~~p~V~~~-~~~VD 254 (335)
..+|.+.+.+.++.+.+.-++. + + |+. +.-....=. .|+| +|..+.+.- ++.+. .++.++ -.-.|
T Consensus 181 ~~it~e~i~~~i~l~~~~l~~~~gi~~PrIaV~GLNPHAGE--~G~~G~EE~~iI~PAI~~~~~----~Gi~v~GP~paD 254 (336)
T PRK05312 181 AALTPELIVATARITAADLRRRFGIASPRLAVAGLNPHAGE--GGALGREDIDIIAPAIEQLRA----EGIDARGPLPAD 254 (336)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeeCCCCCC--CCCCcHHHHHHHHHHHHHHHH----CCCCccCCCCch
Confidence 4589999999999888866632 2 1 332 333333333 5777 544333220 11111 122221 23345
Q ss_pred HHHHHHHhCCCCc-EEEeCCchhhhHHhhhhhhcCccccccccccCCCCCceee-ecCCCCcccccccccCCCCCCCCcc
Q 019837 255 DMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEA-EAAHGTVTRHYRVHQKDDQGSCTYY 332 (335)
Q Consensus 255 a~~~~lv~~P~~F-Viv~~NlfGDILSDlaA~l~GslGlapSanig~~~~~~~f-Ep~HGSAPdiagk~~aGk~~~aNP~ 332 (335)
.+..+-.+ ..| ++|| || =|++-.-.=.+++--+.|+- -+.+.+- =|-||||-||| |||+ |||.
T Consensus 255 t~F~~~~~--~~~D~vva--MY----HDQGliP~K~l~F~~gVNvT-lGLP~iRTSvDHGTAfDIA-----Gkg~-A~~~ 319 (336)
T PRK05312 255 TMFHAAAR--ATYDAAIC--MY----HDQALIPIKTLDFDGGVNVT-LGLPFIRTSPDHGTAFDIA-----GKGI-ARPD 319 (336)
T ss_pred hhcccccc--cCCCEEEE--cc----cccCChhheecccCcceEEe-cCCCeeEeCCCCcchhhhh-----cCCC-CCHH
Confidence 44333322 467 6665 33 24544444556666677774 1222222 46899999997 5566 9998
Q ss_pred ccC
Q 019837 333 PWI 335 (335)
Q Consensus 333 a~I 335 (335)
+|+
T Consensus 320 S~~ 322 (336)
T PRK05312 320 SLI 322 (336)
T ss_pred HHH
Confidence 874
No 43
>PRK02746 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=61.79 E-value=7.8 Score=38.51 Aligned_cols=29 Identities=10% Similarity=-0.031 Sum_probs=23.8
Q ss_pred CCCccccccccEEEECCC--CchHHHHHHHH
Q 019837 1 MAFQKIKVANPIVEMDGD--EMTRVFWKSIK 29 (335)
Q Consensus 1 ~~~~~~~m~~~I~vipGD--GIGpEv~~~~~ 29 (335)
|.+|--.|..+|++--|| ||||||+-.++
T Consensus 1 ~~~~~~~~~p~IaIT~GDpaGIGPEii~ka~ 31 (345)
T PRK02746 1 MSNEDSDPRPRLAITLGDPAGIGPEVILKAL 31 (345)
T ss_pred CCcccCCCCCcEEEeCCCCcchHHHHHHHHH
Confidence 556666677799999999 99999987765
No 44
>PTZ00435 isocitrate dehydrogenase; Provisional
Probab=57.21 E-value=6 Score=40.25 Aligned_cols=18 Identities=0% Similarity=-0.020 Sum_probs=16.6
Q ss_pred CCCEEEEeecc-Ccccccc
Q 019837 127 TKPICIGRHAF-GDQYRAT 144 (335)
Q Consensus 127 ~~divivREnt-eg~Y~g~ 144 (335)
.+|++|+|||| ||+|.+.
T Consensus 143 ~id~vi~rent~e~~y~~~ 161 (413)
T PTZ00435 143 ATDFVVDGPGKLELVFTPA 161 (413)
T ss_pred ceEEEEecCCEEEEEEecC
Confidence 46999999999 9999998
No 45
>PF03971 IDH: Monomeric isocitrate dehydrogenase; InterPro: IPR004436 This family of enzymes catalyses the NADP(+)-dependent oxidative decarboxylation of isocitrate to form 2-oxoglutarate, CO2, and NADPH within the Krebs cycle (1.1.1.42 from EC). Thus this enzyme supplies the cell with a key intermediate in energy metabolism, and precursors for biosynthetic pathways. The activity of this enzyme, which is controlled by phosphorylation, helps regulate carbon flux between the Krebs cycle and the glyoxylate bypass, which is an alternate route that accumulates carbon for biosynthesis when acetate is the sole carbon source for growth []. The phosphorylation state of this enzyme is controlled by isocitrate dehydrogenase kinase/phosphatase. This family has been found in a number of bacterial species including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. The structure of isocitrate dehydrogenase from Azotobacter vinelandii (P16100 from SWISSPROT) has been determined []. This molecule consists of two distinct domains, a small domain and a large domain, with a folding topology similar to that of dimeric isocitrate dehydrogenase from Escherichia coli (P08200 from SWISSPROT). The structure of the large domain repeats a motif observed in the dimeric enzyme. Such a fusional structure by domain duplication enables a single polypeptide chain to form a structure at the catalytic site that is homologous to the dimeric enzyme, the catalytic site of which is located at the interface of two identical subunits.; GO: 0004450 isocitrate dehydrogenase (NADP+) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process; PDB: 1ITW_D 1J1W_A 3MBC_A 2B0T_A.
Probab=54.11 E-value=78 Score=33.92 Aligned_cols=124 Identities=16% Similarity=0.193 Sum_probs=66.9
Q ss_pred eeeCHHHHHHHHHHHHHHHHhCCCC-EEEEeCCCcccccchhHHHHHHHHHHhhhhccccCCCceEeee-eHHHHHHHHH
Q 019837 184 MYNTDESIRAFAEASMNTAYQKKWP-LYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHR-LIDDMVAYAL 261 (335)
Q Consensus 184 ~~~T~~~~eRiar~AFe~A~~r~k~-Vt~v~KaNVl~~~~g~f~~~~~eva~~eY~~~~~~p~V~~~~~-~VDa~~~~lv 261 (335)
+..-..-++-+++.|.+.||..+.+ |.-.|+.- ..|- +....| +.|.......++.+.-+ -+|++-.-|-
T Consensus 455 cq~KD~pI~DWVkLAV~Rar~tg~paiFWLD~~R---AHDa---~lI~kV--~~yL~~hdt~gldi~Im~P~~A~~~sle 526 (735)
T PF03971_consen 455 CQTKDAPIRDWVKLAVNRARATGTPAIFWLDENR---AHDA---ELIKKV--EKYLKDHDTSGLDIRIMSPVEATRFSLE 526 (735)
T ss_dssp EEE-HHHHHHHHHHHHHHHHHHT--EEEE--TTS---HHHH---HHHHHH--HHHHTTS--TT--EEEE-HHHHHHHHHH
T ss_pred hcccCchHHHHHHHHHHHHHhhCCCeEEecCCCC---ccHH---HHHHHH--HHHHHhcCCCCCceEeeCHHHHHHHHHH
Confidence 3444677899999999999998865 55555432 1242 344444 24543333455666665 3555544443
Q ss_pred hCCCC-c-EEEeCCchhhhHHhhhhhhc--Cc---cccccccccCCCCCceeeec-CCCCccccccc
Q 019837 262 KSEGG-Y-VWACKNYDGDVQSDFLAQGF--GS---LGLMTSVLVCPDGKTIEAEA-AHGTVTRHYRV 320 (335)
Q Consensus 262 ~~P~~-F-Viv~~NlfGDILSDlaA~l~--Gs---lGlapSanig~~~~~~~fEp-~HGSAPdiagk 320 (335)
+--.. = +=||-|..=|.|+||.--|= -| |-+.|=.| . -+|||. ..||||.+.-|
T Consensus 527 r~r~G~dTISVTGNVLRDYLTDLFPILELGTSAKMLSIVPLm~---G--GGLFETGAGGSAPKHVqQ 588 (735)
T PF03971_consen 527 RIRAGKDTISVTGNVLRDYLTDLFPILELGTSAKMLSIVPLMN---G--GGLFETGAGGSAPKHVQQ 588 (735)
T ss_dssp HHHTT---EEEE-HHHHHHHHHHHHHHHHS-STTSEEEEEBTT---S---EEEES-SS---HHHHHH
T ss_pred HHHcCCCeEEeechHHHhhhcchhhhhhhccchhhhhhhhccc---C--CceeccCCCCCccHHHHH
Confidence 32222 2 88999999999999986542 11 22223222 2 279998 67899999755
No 46
>PRK03371 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 2; Provisional
Probab=54.02 E-value=11 Score=37.33 Aligned_cols=22 Identities=14% Similarity=0.024 Sum_probs=19.0
Q ss_pred ccccEEEECCC--CchHHHHHHHH
Q 019837 8 VANPIVEMDGD--EMTRVFWKSIK 29 (335)
Q Consensus 8 m~~~I~vipGD--GIGpEv~~~~~ 29 (335)
|.++|++--|| ||||||+-.++
T Consensus 1 ~~~~iaIT~GDpaGIGpEii~ka~ 24 (326)
T PRK03371 1 MTKIIAVTMGDPAGIGPEIIIKSL 24 (326)
T ss_pred CCCcEEEeCCCCcchHHHHHHHHh
Confidence 67889999999 99999887665
No 47
>PRK05312 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=43.33 E-value=20 Score=35.62 Aligned_cols=22 Identities=14% Similarity=0.059 Sum_probs=18.2
Q ss_pred ccccEEEECCC--CchHHHHHHHH
Q 019837 8 VANPIVEMDGD--EMTRVFWKSIK 29 (335)
Q Consensus 8 m~~~I~vipGD--GIGpEv~~~~~ 29 (335)
|..+|++-.|| ||||||+-.++
T Consensus 2 ~~p~iaIT~GDpaGIGpEii~ka~ 25 (336)
T PRK05312 2 MMRPLALSLGDPAGIGPEIALKAW 25 (336)
T ss_pred CCCeEEEeCCCCcchHHHHHHHHH
Confidence 44689999999 99999887664
No 48
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=41.45 E-value=1.5e+02 Score=26.65 Aligned_cols=83 Identities=10% Similarity=-0.009 Sum_probs=53.2
Q ss_pred cEEEECC-CCchHHHHHHHHHHHhcCCCceEEEEEe----cchhhh---hc-cCCcccHHHH----HHHHhcCeeeecCC
Q 019837 11 PIVEMDG-DEMTRVFWKSIKDKLIFPFLELDIKYFD----LGLPNR---DA-TDDKVTVESA----EATLKYNVAIKCAT 77 (335)
Q Consensus 11 ~I~vipG-DGIGpEv~~~~~~~~~~~~~~i~~~~~~----~G~~~~---~~-~G~~lp~~tl----~~~~~~da~lkg~~ 77 (335)
.|...|= +|---.+.+++++-+.+.+.+.+...+. .++... .. ....++++++ +.++++|++++|.
T Consensus 5 ~I~gs~r~~G~t~~l~~~~~~g~~~~G~E~~~i~v~~~~i~~c~~c~~c~~~~~c~~~dD~~~~i~~~l~~aD~iI~gs- 83 (207)
T COG0655 5 GINGSPRSNGNTAKLAEAVLEGAEEAGAEVEIIRLPEKNIKPCTGCFACWKKKPCVIKDDDMNEIYEKLLEADGIIFGS- 83 (207)
T ss_pred EEEecCCCCCcHHHHHHHHHHHHHHcCCEEEEEEecCCCcccchHHHhhhccCCCCCCcccHHHHHHHHHHCCEEEEeC-
Confidence 3444444 8888899999987777777777766544 123222 12 2255665554 5599999999874
Q ss_pred CCCCcchhhHHHhhhcCCCcchhHhhhcCc
Q 019837 78 ITPDEARVKEFVLKQMWKSPNGTIRNILNG 107 (335)
Q Consensus 78 ~~p~~~~~~~~~l~~~~~s~~~~LRk~ldl 107 (335)
|.. |..+..+++.-+|-
T Consensus 84 --Pvy-----------~g~vsa~~K~fiDR 100 (207)
T COG0655 84 --PVY-----------FGNVSAQMKAFIDR 100 (207)
T ss_pred --Cee-----------cCCchHHHHHHHhh
Confidence 321 34556788888885
No 49
>PRK00232 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed
Probab=40.34 E-value=24 Score=34.93 Aligned_cols=22 Identities=14% Similarity=0.129 Sum_probs=18.2
Q ss_pred ccccEEEECCC--CchHHHHHHHH
Q 019837 8 VANPIVEMDGD--EMTRVFWKSIK 29 (335)
Q Consensus 8 m~~~I~vipGD--GIGpEv~~~~~ 29 (335)
|..+|++--|| ||||||+-.++
T Consensus 3 ~~p~iaIT~GDpaGIGpEIi~ka~ 26 (332)
T PRK00232 3 MKPRIAITPGDPAGIGPELVAKLL 26 (332)
T ss_pred CCCcEEEeCCCCcccHHHHHHHHH
Confidence 34689999999 99999987665
No 50
>TIGR00178 monomer_idh isocitrate dehydrogenase, NADP-dependent, monomeric type. The monomeric type of isocitrate dehydrogenase has been found so far in a small number of species, including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. It is NADP-specific.
Probab=39.33 E-value=1.8e+02 Score=31.42 Aligned_cols=120 Identities=16% Similarity=0.181 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCC-EEEEeCCCcccccchhHHHHHHHHHHhhhhccccCCCceEeee-eHHHHHHHHHh--C
Q 019837 188 DESIRAFAEASMNTAYQKKWP-LYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHR-LIDDMVAYALK--S 263 (335)
Q Consensus 188 ~~~~eRiar~AFe~A~~r~k~-Vt~v~KaNVl~~~~g~f~~~~~eva~~eY~~~~~~p~V~~~~~-~VDa~~~~lv~--~ 263 (335)
..-++-+++.|.+.|+..+.+ |.-.|+.- ..|--+ ...| +.|.......++.++-+ .++++-.-|=+ +
T Consensus 463 D~pI~DWVkLAV~Rar~sg~pavFWLD~~R---aHDa~l---I~kV--~~yL~~hdt~gldi~Im~p~~A~~~slerir~ 534 (741)
T TIGR00178 463 DAPIQDWVKLAVTRARATGTPAVFWLDPAR---AHDAQL---IKKV--ETYLKDHDTEGLDIQILSPVEATRFSLARIRR 534 (741)
T ss_pred CchHHHHHHHHHHHHHhcCCCeEEEeCCCc---hhHHHH---HHHH--HHHHHhcCCCCCceEeeCHHHHHHHHHHHHHc
Confidence 456888999999999998855 54455432 124323 3333 13322222245666655 45555443332 2
Q ss_pred CCCcEEEeCCchhhhHHhhhhhhcCcccccccccc---CC--CCCceeeec-CCCCccccccc
Q 019837 264 EGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLV---CP--DGKTIEAEA-AHGTVTRHYRV 320 (335)
Q Consensus 264 P~~FViv~~NlfGDILSDlaA~l~GslGlapSani---g~--~~~~~~fEp-~HGSAPdiagk 320 (335)
=+.-+=||-|..=|.|+||.--|= |..||-+ =| .| -+|||. ..||||.+.-|
T Consensus 535 G~dTISVTGNVLRDYLTDLFPILE----lGTSAKMLSIVPLm~G-GGLFETGAGGSAPKHVqQ 592 (741)
T TIGR00178 535 GEDTISVTGNVLRDYLTDLFPILE----LGTSAKMLSIVPLMAG-GGLFETGAGGSAPKHVQQ 592 (741)
T ss_pred CCCeEEEechhHHhhhcchhhhhh----hccchhhhhhhhcccC-CceecCCCCCCccHHHHH
Confidence 222288999999999999976542 2233322 11 12 279998 67899999754
No 51
>PRK03743 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=38.80 E-value=25 Score=34.80 Aligned_cols=20 Identities=15% Similarity=-0.082 Sum_probs=17.2
Q ss_pred ccEEEECCC--CchHHHHHHHH
Q 019837 10 NPIVEMDGD--EMTRVFWKSIK 29 (335)
Q Consensus 10 ~~I~vipGD--GIGpEv~~~~~ 29 (335)
.+|++--|| ||||||+-.++
T Consensus 4 p~iaIT~GDpaGIGpEii~ka~ 25 (332)
T PRK03743 4 PIIAIPIGDPAGIGPEIVVKTL 25 (332)
T ss_pred CeEEEeCCCCcchHHHHHHHHH
Confidence 579999999 99999887665
No 52
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=35.28 E-value=41 Score=26.28 Aligned_cols=27 Identities=15% Similarity=0.037 Sum_probs=21.9
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEe
Q 019837 187 TDESIRAFAEASMNTAYQKKWPLYLST 213 (335)
Q Consensus 187 T~~~~eRiar~AFe~A~~r~k~Vt~v~ 213 (335)
..+.+++.+++|+++|+..+.+|+++|
T Consensus 11 ~~~~~~~al~~a~~la~~~~~~i~~l~ 37 (140)
T PF00582_consen 11 GSEESRRALRFALELAKRSGAEITLLH 37 (140)
T ss_dssp SSHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHhhCCeEEEEE
Confidence 346678999999999999887776655
No 53
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=32.60 E-value=3.3e+02 Score=24.67 Aligned_cols=96 Identities=16% Similarity=0.138 Sum_probs=66.0
Q ss_pred eeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchhHHHHHHHHHHhhhhccccCCCceEee-eeHHHHHHHHHhC
Q 019837 185 YNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEH-RLIDDMVAYALKS 263 (335)
Q Consensus 185 ~~T~~~~eRiar~AFe~A~~r~k~Vt~v~KaNVl~~~~g~f~~~~~eva~~eY~~~~~~p~V~~~~-~~VDa~~~~lv~~ 263 (335)
...-+..||++--|.+.|++. ..|.++|----|...+--|++.++++...+= |=|..=| ..-|-..+++-+.
T Consensus 80 ~V~v~~le~i~~~al~rA~~~-aDvIIIDEIGpMElks~~f~~~ve~vl~~~k------pliatlHrrsr~P~v~~ik~~ 152 (179)
T COG1618 80 GVNVEGLEEIAIPALRRALEE-ADVIIIDEIGPMELKSKKFREAVEEVLKSGK------PLIATLHRRSRHPLVQRIKKL 152 (179)
T ss_pred EeeHHHHHHHhHHHHHHHhhc-CCEEEEecccchhhccHHHHHHHHHHhcCCC------cEEEEEecccCChHHHHhhhc
Confidence 455688999999999999886 6899999999999888889999999984332 5444444 3333333344333
Q ss_pred CCCcEEEeCCchhhhHHhhhhhhc
Q 019837 264 EGGYVWACKNYDGDVQSDFLAQGF 287 (335)
Q Consensus 264 P~~FViv~~NlfGDILSDlaA~l~ 287 (335)
..-+|++++-=-+-|+.++.+.|-
T Consensus 153 ~~v~v~lt~~NR~~i~~~Il~~L~ 176 (179)
T COG1618 153 GGVYVFLTPENRNRILNEILSVLK 176 (179)
T ss_pred CCEEEEEccchhhHHHHHHHHHhc
Confidence 333354666444477777766653
No 54
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=30.91 E-value=1e+02 Score=31.22 Aligned_cols=64 Identities=11% Similarity=0.091 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHhCCCCEEEEeCCCcccccchhHHHHHHHHHHhhhhccccCCCceEeeeeHHHHHHHHHhCCCCc----
Q 019837 192 RAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGY---- 267 (335)
Q Consensus 192 eRiar~AFe~A~~r~k~Vt~v~KaNVl~~~~g~f~~~~~eva~~eY~~~~~~p~V~~~~~~VDa~~~~lv~~P~~F---- 267 (335)
-|++|..|++|+.+.-.+..+|- ...++.+.| -+=+--+.=|.-..|+|+..=.+|
T Consensus 230 aRlVRelF~lArekaPsIIFiDE--------------IDAIg~kR~------d~~t~gDrEVQRTmleLL~qlDGFD~~~ 289 (406)
T COG1222 230 ARLVRELFELAREKAPSIIFIDE--------------IDAIGAKRF------DSGTSGDREVQRTMLELLNQLDGFDPRG 289 (406)
T ss_pred hHHHHHHHHHHhhcCCeEEEEec--------------hhhhhcccc------cCCCCchHHHHHHHHHHHHhccCCCCCC
Confidence 48999999999986544555542 344544444 333334444555667777755555
Q ss_pred ---EEEeCCch
Q 019837 268 ---VWACKNYD 275 (335)
Q Consensus 268 ---Viv~~Nlf 275 (335)
||.|+|-.
T Consensus 290 nvKVI~ATNR~ 300 (406)
T COG1222 290 NVKVIMATNRP 300 (406)
T ss_pred CeEEEEecCCc
Confidence 77777765
No 55
>COG1995 PdxA Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=30.90 E-value=38 Score=33.51 Aligned_cols=17 Identities=18% Similarity=0.083 Sum_probs=14.7
Q ss_pred ccEEEECCC--CchHHHHH
Q 019837 10 NPIVEMDGD--EMTRVFWK 26 (335)
Q Consensus 10 ~~I~vipGD--GIGpEv~~ 26 (335)
.+|++-.|| ||||||+-
T Consensus 4 ~~iAit~GDPaGIGPEi~~ 22 (332)
T COG1995 4 PRIAITMGDPAGIGPELVA 22 (332)
T ss_pred CceEecCCCcccCCHHHHH
Confidence 589999999 99999943
No 56
>PRK03946 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=30.88 E-value=31 Score=33.78 Aligned_cols=19 Identities=16% Similarity=-0.036 Sum_probs=16.0
Q ss_pred ccEEEECCC--CchHHHHHHH
Q 019837 10 NPIVEMDGD--EMTRVFWKSI 28 (335)
Q Consensus 10 ~~I~vipGD--GIGpEv~~~~ 28 (335)
.+|++--|| ||||||+-.+
T Consensus 2 p~iaiT~GDpaGIGpEii~ka 22 (307)
T PRK03946 2 KKIAISIGDINGIGLEIALKS 22 (307)
T ss_pred CeEEEcCCCCcccHHHHHHHh
Confidence 468888999 9999988765
No 57
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=30.75 E-value=82 Score=24.98 Aligned_cols=28 Identities=11% Similarity=0.000 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeCCC
Q 019837 189 ESIRAFAEASMNTAYQKKWPLYLSTKNT 216 (335)
Q Consensus 189 ~~~eRiar~AFe~A~~r~k~Vt~v~KaN 216 (335)
+.+++++++|+.+|+..+.+|+++|=.+
T Consensus 10 ~~~~~~l~~a~~la~~~~~~v~ll~v~~ 37 (132)
T cd01988 10 NTARDLLELAAALARAQNGEIIPLNVIE 37 (132)
T ss_pred hhHHHHHHHHHHHhhcCCCeEEEEEEEe
Confidence 5689999999999998877877766433
No 58
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=30.15 E-value=84 Score=30.93 Aligned_cols=44 Identities=14% Similarity=0.212 Sum_probs=31.5
Q ss_pred HHHHHHHHhCCCCEEEEeCCCcccccchhHHHHHHHHHHhhhhccccCCCceEeeeeHH
Q 019837 196 EASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLID 254 (335)
Q Consensus 196 r~AFe~A~~r~k~Vt~v~KaNVl~~~~g~f~~~~~eva~~eY~~~~~~p~V~~~~~~VD 254 (335)
.+|+|+|+ |+-+|.++. + +.+.+.++..|+.+ +| + |++.-..+|
T Consensus 64 ayA~eLAk-rG~nvvLIs-----R-t~~KL~~v~kEI~~-~~------~-vev~~i~~D 107 (312)
T KOG1014|consen 64 AYARELAK-RGFNVVLIS-----R-TQEKLEAVAKEIEE-KY------K-VEVRIIAID 107 (312)
T ss_pred HHHHHHHH-cCCEEEEEe-----C-CHHHHHHHHHHHHH-Hh------C-cEEEEEEEe
Confidence 46999998 676688865 3 67788899999984 78 4 555544444
No 59
>KOG1671 consensus Ubiquinol cytochrome c reductase, subunit RIP1 [Energy production and conversion]
Probab=29.77 E-value=38 Score=31.26 Aligned_cols=47 Identities=19% Similarity=0.117 Sum_probs=35.3
Q ss_pred HHhCCCCc-EE-EeCCchhhhHHhhhhhhcCccccccccccCCCCCceeeecCCCCcccccccccCC
Q 019837 260 ALKSEGGY-VW-ACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKD 324 (335)
Q Consensus 260 lv~~P~~F-Vi-v~~NlfGDILSDlaA~l~GslGlapSanig~~~~~~~fEp~HGSAPdiagk~~aG 324 (335)
=|++|+.+ || ||+- ||..|-+|-|+.+ +.|-|.|||--|+-|+=..|
T Consensus 140 rvk~~ewl~~igVCTh----------------LGCVp~~~AGd~g--g~~CPCHGSHYdasGRIrkG 188 (210)
T KOG1671|consen 140 RVKKPEWLVVIGVCTH----------------LGCVPIANAGDYG--GYYCPCHGSHYDASGRIRKG 188 (210)
T ss_pred hccCcceEEEEeeecc----------------ccccccccccccC--ceecccccccccccCceecC
Confidence 46788877 33 5553 5888999999655 79999999999998763333
No 60
>PRK15005 universal stress protein F; Provisional
Probab=29.77 E-value=72 Score=26.06 Aligned_cols=23 Identities=9% Similarity=-0.100 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEe
Q 019837 191 IRAFAEASMNTAYQKKWPLYLST 213 (335)
Q Consensus 191 ~eRiar~AFe~A~~r~k~Vt~v~ 213 (335)
+++.+++|+++|++.+.+|+++|
T Consensus 17 ~~~a~~~a~~la~~~~~~l~ll~ 39 (144)
T PRK15005 17 TQRVISHVEAEAKIDDAEVHFLT 39 (144)
T ss_pred HHHHHHHHHHHHhccCCeEEEEE
Confidence 68899999999998887777655
No 61
>PRK01909 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=26.07 E-value=53 Score=32.51 Aligned_cols=20 Identities=10% Similarity=-0.039 Sum_probs=17.3
Q ss_pred ccEEEECCC--CchHHHHHHHH
Q 019837 10 NPIVEMDGD--EMTRVFWKSIK 29 (335)
Q Consensus 10 ~~I~vipGD--GIGpEv~~~~~ 29 (335)
.+|++--|| ||||||+-.++
T Consensus 6 p~iaIT~GDpaGIGpEii~kal 27 (329)
T PRK01909 6 LQIAITTGEPAGVGPELTVRAL 27 (329)
T ss_pred CeEEEeCCCCcchHHHHHHHHH
Confidence 479999999 99999987775
No 62
>PRK09982 universal stress protein UspD; Provisional
Probab=25.77 E-value=70 Score=26.65 Aligned_cols=25 Identities=12% Similarity=0.016 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHhCCCCEEEEeC
Q 019837 190 SIRAFAEASMNTAYQKKWPLYLSTK 214 (335)
Q Consensus 190 ~~eRiar~AFe~A~~r~k~Vt~v~K 214 (335)
.+++.+++|+++|++.+.+|+++|=
T Consensus 15 ~s~~al~~A~~lA~~~~a~l~llhV 39 (142)
T PRK09982 15 EDALLVNKALELARHNDAHLTLIHI 39 (142)
T ss_pred chHHHHHHHHHHHHHhCCeEEEEEE
Confidence 4688999999999988888888873
No 63
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=23.93 E-value=69 Score=26.31 Aligned_cols=26 Identities=8% Similarity=0.020 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeC
Q 019837 189 ESIRAFAEASMNTAYQKKWPLYLSTK 214 (335)
Q Consensus 189 ~~~eRiar~AFe~A~~r~k~Vt~v~K 214 (335)
+.+++.+++|+++|+..+.+|+++|=
T Consensus 10 ~~s~~al~~a~~~a~~~~~~l~ll~v 35 (146)
T cd01989 10 KKSKNALKWALDNLATKGQTIVLVHV 35 (146)
T ss_pred cccHHHHHHHHHhccCCCCcEEEEEe
Confidence 45788999999999888878887773
No 64
>COG0723 QcrA Rieske Fe-S protein [Energy production and conversion]
Probab=23.02 E-value=63 Score=28.52 Aligned_cols=20 Identities=15% Similarity=-0.187 Sum_probs=16.5
Q ss_pred eeeecCCCCcccccccccCC
Q 019837 305 IEAEAAHGTVTRHYRVHQKD 324 (335)
Q Consensus 305 ~~fEp~HGSAPdiagk~~aG 324 (335)
.+|-|.|||.-|..|+-+.|
T Consensus 125 ~~~CPCHGS~yd~~g~vv~G 144 (177)
T COG0723 125 GFFCPCHGSRYDPDGGVVKG 144 (177)
T ss_pred eEEccCCCCeEcCCCCeeCC
Confidence 68999999999998775544
No 65
>TIGR00557 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase. This model represents PdxA, an NAD+-dependent 4-hydroxythreonine 4-phosphate dehydrogenase (EC 1.1.1.262) active in pyridoxal phosphate biosynthesis.
Probab=22.93 E-value=66 Score=31.73 Aligned_cols=19 Identities=16% Similarity=-0.010 Sum_probs=15.3
Q ss_pred cEEEECCC--CchHHHHHHHH
Q 019837 11 PIVEMDGD--EMTRVFWKSIK 29 (335)
Q Consensus 11 ~I~vipGD--GIGpEv~~~~~ 29 (335)
+|++--|| ||||||+-.++
T Consensus 1 ~iaIT~GDp~GIGpEii~ka~ 21 (320)
T TIGR00557 1 RIAITLGDPAGIGPEIILKAL 21 (320)
T ss_pred CEEEecCCCcchHHHHHHHHH
Confidence 47778898 99999887665
No 66
>PLN03065 isocitrate dehydrogenase (NADP+); Provisional
Probab=22.31 E-value=55 Score=34.05 Aligned_cols=12 Identities=8% Similarity=-0.114 Sum_probs=10.3
Q ss_pred CCEEEE----------eeccCc
Q 019837 128 KPICIG----------RHAFGD 139 (335)
Q Consensus 128 ~diviv----------REnteg 139 (335)
+|++|+ |||||+
T Consensus 212 iD~vi~~~g~~~~~~~rEnte~ 233 (483)
T PLN03065 212 TDTVIKGPGKLKMVFVPEDGNA 233 (483)
T ss_pred eEEEEecCCeeEEEeecCCCCC
Confidence 588887 999997
No 67
>cd00982 gltB_C gltb_C. This domain is found at the C-terminus of the large subunit (gltB) of glutamate synthase (GltS). GltS encodes a complex iron-sulfur flavoprotein that catalyzes the synthesis of L-glutamate from L-glutamine and 2-oxoglutarate. It requires the transfer of ammonia and electrons among three distinct active centers that carry out L-Gln hydrolysis, conversion of 2-oxoglutarate into L-Glu, and electron uptake from a donor. These catalytic sites appear to occur in other domains within the protein, and not the domain in this CD. This particular domain has no known function, but it likely has a structural role as it interacts with the amidotransferase and FMN-binding domains of gltS.
Probab=22.06 E-value=91 Score=29.73 Aligned_cols=81 Identities=16% Similarity=0.145 Sum_probs=51.1
Q ss_pred eeHHHHHHHHHhCCCC----c-EEEeCCchhhhHHhhhhhhcCccccccc-ccc---CCCCC-ceeeec------CCCCc
Q 019837 251 RLIDDMVAYALKSEGG----Y-VWACKNYDGDVQSDFLAQGFGSLGLMTS-VLV---CPDGK-TIEAEA------AHGTV 314 (335)
Q Consensus 251 ~~VDa~~~~lv~~P~~----F-Viv~~NlfGDILSDlaA~l~GslGlapS-ani---g~~~~-~~~fEp------~HGSA 314 (335)
.+++.+...+..+-+. | |-=+.--+|-.||-..+.-.|.-||.+. .+| |.-+. .+-|-+ ++|.|
T Consensus 4 ~~i~~~~~~~~~~~~~~~~~~~i~N~dRsvGt~ls~~i~~~~g~~gl~~~~i~i~~~G~aGq~~Gaf~~~G~~i~v~G~A 83 (251)
T cd00982 4 KLIADAEPALIENGEPVTLEYPIRNTDRAVGTMLSGEIAKRYGEEGLPEDTIKIKFEGSAGQSFGAFLAKGVTLELEGDA 83 (251)
T ss_pred HHHHHHHHHHHhcCCeEEEEeeeEecccchhhHHHHHHHHHhcccCCCCCcEEEEEEcCCCceeeeecCCCCEEEEEecc
Confidence 3444444444343332 2 6666778999999999999999888543 332 21111 345554 68999
Q ss_pred ccccccccCCCCCCCCc
Q 019837 315 TRHYRVHQKDDQGSCTY 331 (335)
Q Consensus 315 Pdiagk~~aGk~~~aNP 331 (335)
.|++||...|=.|+.+|
T Consensus 84 ~dyvGk~m~GG~IvV~g 100 (251)
T cd00982 84 NDYVGKGLSGGRIVVRP 100 (251)
T ss_pred cccccccccCCEEEEEC
Confidence 99999877665544444
No 68
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=21.73 E-value=1.3e+02 Score=23.14 Aligned_cols=26 Identities=15% Similarity=-0.070 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEe
Q 019837 188 DESIRAFAEASMNTAYQKKWPLYLST 213 (335)
Q Consensus 188 ~~~~eRiar~AFe~A~~r~k~Vt~v~ 213 (335)
...+.++.++|.++|..++.++|++|
T Consensus 9 ~~~~~~~l~~a~~~a~~~~~~i~~l~ 34 (130)
T cd00293 9 SEESERALRWAARLARRLGAELVLLH 34 (130)
T ss_pred CHHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 46688899999999999888888776
No 69
>cd06063 H2MP_Cyano-H2up This group of endopeptidases include HupW enzymes that are specific to the cyanobacterial hydrogenase and are involved in the C-terminal cleavage of the hydrogenase large subunit precursor protein. Cyanobacterial nickel-iron (NiFe)-hydrogenases are found exclusively in the N2-fixing strains and are encoded by hup (hydrogen uptake) genes. These uptake hydrogenases are heterodimers with a large (hupL) and small subunit (hupS) and catalyze the consumption of the H2 produced during N2 fixation. Sequence similarity shows that the putative metal-binding resides are well conserved in this group of hydrogen maturation proteases. This group also includes such proteins as the hydrogenase III from Aquifex aeolicus.
Probab=20.31 E-value=1.8e+02 Score=24.69 Aligned_cols=44 Identities=14% Similarity=0.191 Sum_probs=28.6
Q ss_pred CCCchHHHHHHHHHHHhcCCCceEEEEEecchhhhhccCCcccHHHHHHHHhcCeee
Q 019837 17 GDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAI 73 (335)
Q Consensus 17 GDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~l 73 (335)
=||+|+++.++..+ ..++=+++.++.| ..+.+.+..+.++|.++
T Consensus 13 DDG~G~~v~~~L~~----~~~~~~v~~id~g---------t~~~~l~~~l~~~d~vI 56 (146)
T cd06063 13 DDGVGPILIRRLQA----YLLPPHVRLVDCG---------TAGMEVMFRARGAKQLI 56 (146)
T ss_pred cCcHHHHHHHHHhh----cCCCCCeEEEECC---------CCHHHHHHHhcCCCEEE
Confidence 37999999887653 2222224445543 35777888888888755
No 70
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=20.05 E-value=2.3e+02 Score=27.25 Aligned_cols=60 Identities=17% Similarity=0.138 Sum_probs=36.9
Q ss_pred cccEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecchhhhhccCCcccHHHHHHHHhcCeeee
Q 019837 9 ANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIK 74 (335)
Q Consensus 9 ~~~I~vipGDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~lk 74 (335)
..+|+||-||-=--++++ .+.+.|+++.. +-+..+.|...|..+.+..-++++++|++++
T Consensus 2 ~~~~~v~ggd~r~~~~~~----~l~~~G~~v~~--~g~~~~~~~~~g~~~~~~~~~~~~~ad~ii~ 61 (296)
T PRK08306 2 GKHIAVIGGDARQLELIR----KLVELGAKVSL--VGFDQLDHGFTGATKSSSLEEALSDVDVIIL 61 (296)
T ss_pred CcEEEEEcCcHHHHHHHH----HHHHCCCEEEE--EeccccccccCCceeeccHHHHhccCCEEEE
Confidence 368999999953333222 45566766555 3333344555566665444567889999774
No 71
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=20.03 E-value=1e+02 Score=23.58 Aligned_cols=37 Identities=11% Similarity=0.149 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchhHHHHHHHHHHhhh
Q 019837 190 SIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANW 237 (335)
Q Consensus 190 ~~eRiar~AFe~A~~r~k~Vt~v~KaNVl~~~~g~f~~~~~eva~~eY 237 (335)
-..++++.|+++|++++.+|.. ++..-...+++- .+|
T Consensus 39 ia~~L~~~~l~~a~~~~~kv~p---------~C~y~~~~~~~h--pey 75 (78)
T PF14542_consen 39 IAKKLVEAALDYARENGLKVVP---------TCSYVAKYFRRH--PEY 75 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEE---------TSHHHHHHHHH---GGG
T ss_pred HHHHHHHHHHHHHHHCCCEEEE---------ECHHHHHHHHhC--ccc
Confidence 3678999999999999987764 466666666553 356
Done!