Query 019837
Match_columns 335
No_of_seqs 128 out of 1171
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 07:50:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019837.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019837hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3us8_A Isocitrate dehydrogenas 100.0 3E-104 9E-109 786.8 24.8 332 2-335 23-354 (427)
2 1lwd_A Isocitrate dehydrogenas 100.0 5E-102 2E-106 770.0 24.6 333 2-335 1-333 (413)
3 2uxq_A Isocitrate dehydrogenas 100.0 4E-101 1E-105 761.2 24.0 328 5-335 2-329 (402)
4 4aoy_A Isocitrate dehydrogenas 100.0 3E-101 9E-106 760.3 22.7 330 3-335 1-330 (402)
5 1zor_A Isocitrate dehydrogenas 100.0 2E-100 5E-105 756.4 24.2 322 3-335 1-327 (399)
6 1x0l_A Homoisocitrate dehydrog 100.0 7E-96 2E-100 706.4 25.6 274 9-335 1-277 (333)
7 3u1h_A 3-isopropylmalate dehyd 100.0 2.9E-96 1E-100 719.0 22.5 288 3-335 18-318 (390)
8 1w0d_A 3-isopropylmalate dehyd 100.0 2.2E-95 7E-100 704.4 22.7 282 10-335 2-289 (337)
9 2qfy_A Isocitrate dehydrogenas 100.0 5.5E-95 1.9E-99 721.5 22.8 331 3-335 16-349 (427)
10 3flk_A Tartrate dehydrogenase/ 100.0 6.5E-95 2.2E-99 706.9 22.8 285 8-335 4-302 (364)
11 3ty4_A Probable homoisocitrate 100.0 1.6E-94 5.4E-99 703.6 25.0 279 9-335 10-310 (366)
12 3udu_A 3-isopropylmalate dehyd 100.0 4.5E-95 1.5E-99 706.3 20.5 279 10-335 7-299 (361)
13 3vmk_A 3-isopropylmalate dehyd 100.0 5.2E-94 1.8E-98 701.9 24.6 287 7-335 11-311 (375)
14 2y3z_A 3-isopropylmalate dehyd 100.0 3.1E-94 1.1E-98 700.5 22.1 278 10-335 4-294 (359)
15 2d1c_A Isocitrate dehydrogenas 100.0 2E-93 7E-98 714.5 27.2 282 1-335 7-298 (496)
16 3dms_A Isocitrate dehydrogenas 100.0 1.6E-93 5.4E-98 709.6 26.0 303 8-335 35-367 (427)
17 3r8w_A 3-isopropylmalate dehyd 100.0 5.8E-94 2E-98 706.4 22.2 287 7-335 40-339 (405)
18 1cnz_A IPMDH, IMDH, protein (3 100.0 1E-93 3.6E-98 698.6 22.4 285 9-335 4-302 (363)
19 2e0c_A 409AA long hypothetical 100.0 2.2E-93 7.4E-98 705.8 24.5 293 10-335 25-348 (409)
20 2iv0_A Isocitrate dehydrogenas 100.0 1.4E-93 4.7E-98 707.3 23.0 293 10-335 28-351 (412)
21 3blx_B Isocitrate dehydrogenas 100.0 9.9E-94 3.4E-98 695.8 19.3 272 10-335 22-299 (354)
22 1vlc_A 3-isopropylmalate dehyd 100.0 1.9E-93 6.6E-98 695.9 21.3 278 10-335 13-304 (366)
23 1tyo_A Isocitrate dehydrogenas 100.0 4.5E-93 1.6E-97 707.2 23.6 296 10-335 36-361 (435)
24 1hqs_A Isocitrate dehydrogenas 100.0 6.5E-93 2.2E-97 704.5 23.9 296 10-335 20-363 (423)
25 2d4v_A Isocitrate dehydrogenas 100.0 1.8E-92 6.1E-97 701.9 26.0 295 10-335 27-370 (429)
26 1wpw_A 3-isopropylmalate dehyd 100.0 2.1E-92 7.3E-97 682.8 24.9 267 10-335 2-274 (336)
27 3blx_A Isocitrate dehydrogenas 100.0 3.6E-93 1.2E-97 690.8 19.2 272 9-335 17-292 (349)
28 1a05_A IPMDH, IMDH, 3-isopropy 100.0 1.2E-92 4.1E-97 690.5 20.2 282 10-335 2-296 (358)
29 4aty_A Terephthalate 1,2-CIS-d 83.1 0.26 8.9E-06 47.4 0.3 129 184-335 195-332 (349)
30 1yxo_A 4-hydroxythreonine-4-ph 82.8 0.29 1E-05 46.8 0.5 133 184-335 173-314 (328)
31 3lxy_A 4-hydroxythreonine-4-ph 82.5 0.31 1.1E-05 46.7 0.6 132 184-335 178-319 (334)
32 2hi1_A 4-hydroxythreonine-4-ph 82.1 0.3 1E-05 46.8 0.3 133 184-335 180-320 (330)
33 3tsn_A 4-hydroxythreonine-4-ph 76.7 0.56 1.9E-05 45.4 0.3 70 251-335 282-354 (367)
34 2qfy_A Isocitrate dehydrogenas 70.5 0.73 2.5E-05 45.6 -0.6 16 127-142 156-171 (427)
35 2b0t_A NADP isocitrate dehydro 55.1 93 0.0032 31.9 11.2 128 180-320 451-588 (738)
36 1itw_A Isocitrate dehydrogenas 54.8 94 0.0032 31.9 11.2 128 180-320 455-592 (741)
37 1yxo_A 4-hydroxythreonine-4-ph 49.2 9.9 0.00034 36.2 3.1 22 8-29 1-24 (328)
38 3lxy_A 4-hydroxythreonine-4-ph 48.4 9.1 0.00031 36.5 2.7 25 2-28 3-29 (334)
39 2hi1_A 4-hydroxythreonine-4-ph 47.0 12 0.0004 35.7 3.2 19 11-29 8-28 (330)
40 3u7r_A NADPH-dependent FMN red 33.0 1.2E+02 0.0039 26.0 7.2 82 8-107 1-92 (190)
41 4aty_A Terephthalate 1,2-CIS-d 30.6 29 0.00098 33.0 3.1 20 10-29 9-30 (349)
42 3s3t_A Nucleotide-binding prot 30.5 34 0.0012 26.5 3.1 27 188-214 15-41 (146)
43 3hgm_A Universal stress protei 29.4 37 0.0013 26.3 3.1 26 189-214 13-38 (147)
44 3fg9_A Protein of universal st 28.5 46 0.0016 26.3 3.6 27 188-214 27-53 (156)
45 3tsn_A 4-hydroxythreonine-4-ph 27.5 45 0.0015 32.1 3.8 20 10-29 5-26 (367)
46 3dlo_A Universal stress protei 27.0 50 0.0017 26.5 3.6 26 188-213 35-60 (155)
47 2z08_A Universal stress protei 25.7 47 0.0016 25.6 3.1 25 189-213 13-37 (137)
48 3tnj_A Universal stress protei 23.8 47 0.0016 25.9 2.7 25 189-213 17-41 (150)
49 3idf_A USP-like protein; unive 23.1 52 0.0018 25.2 2.9 27 189-215 12-39 (138)
50 1jmv_A USPA, universal stress 21.1 58 0.002 25.0 2.7 25 189-213 13-37 (141)
51 2dum_A Hypothetical protein PH 21.0 50 0.0017 26.5 2.4 25 189-213 16-40 (170)
52 1mjh_A Protein (ATP-binding do 20.2 44 0.0015 26.5 1.9 25 189-213 16-40 (162)
No 1
>3us8_A Isocitrate dehydrogenase [NADP]; PSI-biology, structural genomics; 2.25A {Sinorhizobium meliloti}
Probab=100.00 E-value=2.7e-104 Score=786.75 Aligned_cols=332 Identities=69% Similarity=1.139 Sum_probs=298.9
Q ss_pred CCccccccccEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecchhhhhccCCcccHHHHHHHHhcCeeeecCCCCCC
Q 019837 2 AFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPD 81 (335)
Q Consensus 2 ~~~~~~m~~~I~vipGDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~lkg~~~~p~ 81 (335)
.|.||||.++|++|||||||||||+++++++.+++++|+|+++++|.+++++||++||++++++|+++|++||||++||.
T Consensus 23 ~~~~i~~~~~I~vipGDGIGpEI~~~~~~vL~~~~~~i~~~~~~~G~~~~~~tg~~lp~etl~aik~~da~LkGav~tP~ 102 (427)
T 3us8_A 23 MMAKIKVANPVVELDGDEMTRIIWQFIKDKLIHPYLDLDLEYYDLGVENRDATDDQVTIDAANAIKKHGVGVKCATITPD 102 (427)
T ss_dssp --CCEECCSCEEEEECCHHHHHHHHHHHHHHTTTTEECCEEEEECCHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCC
T ss_pred ccccccccceEEEEcCCcccHHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHhhCCcCCHHHHHHHHHCCEEEECCccCCC
Confidence 47899999999999999999999999998887788999999999999999999999999999999999999999999998
Q ss_pred cchhhHHHhhhcCCCcchhHhhhcCceEEeecccccCCCCCCCCCCCCEEEEeeccCccccccceeeeCCCceeeeeecC
Q 019837 82 EARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPE 161 (335)
Q Consensus 82 ~~~~~~~~l~~~~~s~~~~LRk~ldlyanvRPv~~~~~~~~~~~~~~divivREnteg~Y~g~e~~~~~~g~~~~~~~~~ 161 (335)
..+.+++.+..+|+|+|++|||+||||||+||+.++++|++.++++.||||+||||||+|+|+|+++.++|+.+..|.++
T Consensus 103 ~~~~~e~~l~~~~~s~n~~LRk~LdlyanvRPv~~~~ip~~~~~~~~DivIvREnteg~Y~g~e~~~~~~~~~~l~~~~~ 182 (427)
T 3us8_A 103 EGRVEEFKLKKMWKSPNGTIRNILGGVIFREPIICKNVPRLVPGWTKPIIVGRHAFGDQYRATDFKFPGKGKLSIKFVGE 182 (427)
T ss_dssp HHHHHHHTCSSCCCCHHHHHHHHHCSEEEEEECCCTTSCCSSTTCCSCEEEEEECSSGGGGCEEEEECSSEEEEEEEEET
T ss_pred ccccccccccccccCchHHHHHHhCCeEEecceeccCCCCCCCCCCCCEEEEEeCCCCccCCceeEEecCCcceeeeecc
Confidence 76666667777899999999999999999999866899988877889999999999999999999987788766667665
Q ss_pred CCCccchhhhccccCccceeeeeeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchhHHHHHHHHHHhhhhccc
Q 019837 162 GKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKF 241 (335)
Q Consensus 162 ~g~~~~~~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r~k~Vt~v~KaNVl~~~~g~f~~~~~eva~~eY~~~~ 241 (335)
+| ...+.+.+++++ .+++++++||++++|||+|+||+||++|+++||+|||+|||+.|+|+||++|+|||+++|.++|
T Consensus 183 ~G-~~~~~~~~~~~~-~~va~~~~~T~~~~eRiar~AFe~A~~r~kkVt~v~KaNIlk~tdglfr~~~~eva~~eYp~~~ 260 (427)
T 3us8_A 183 DG-QTIEHDVYDAPG-AGVALAMYNLDESITEFARASFNYGLQRKVPVYLSTKNTILKAYDGRFKDIFQKVFDEEFAAQF 260 (427)
T ss_dssp TS-CEEEEEEEEESS-CEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHHH
T ss_pred cc-ccccccccccCC-CcEEEEEeeCHHHHHHHHHHHHHHHHHcCCcEEEEECcccchhhhhHHHHHHHHHHHHhCcccc
Confidence 55 212222333332 3566788899999999999999999999999999999999999999999999999955997777
Q ss_pred cCCCceEeeeeHHHHHHHHHhCCCCcEEEeCCchhhhHHhhhhhhcCccccccccccCCCCCceeeecCCCCcccccccc
Q 019837 242 EAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVH 321 (335)
Q Consensus 242 ~~p~V~~~~~~VDa~~~~lv~~P~~FViv~~NlfGDILSDlaA~l~GslGlapSanig~~~~~~~fEp~HGSAPdiagk~ 321 (335)
.+|+|+++|+|||+||||||++|++|||||+|||||||||++|+++|||||+||+|||+++.++||||+|||||||+|++
T Consensus 261 ~~~~I~~~~~~VD~~~mqlv~~P~~FVivt~NlfGDIlSD~aA~l~GslGl~pSanig~~~~~a~fEp~HGSAPd~~~~~ 340 (427)
T 3us8_A 261 KAEKLWYEHRLIDDMVASALKWSGGYVWACKNYDGDVQSDIVAQGFGSLGLMTSVLMTPDGKTVEAEAAHGTVTRHYRQH 340 (427)
T ss_dssp HHTTCCEEEEEHHHHHHHHHHSCCCEEEEECHHHHHHHHHHHHHHHSCTTSEEEEEECTTSCCEEEECCSCCCHHHHHHH
T ss_pred CCCCeEEEEEEHHHHHHHHhhCCCCcEEEeCCcCCcHHHHHHHHhcCChhhCceeEECCCCCeEEEeCCCCCcCCccchh
Confidence 77899999999999999999999999999999999999999999999999999999998763489999999999999999
Q ss_pred cCCCCCCCCccccC
Q 019837 322 QKDDQGSCTYYPWI 335 (335)
Q Consensus 322 ~aGk~~~aNP~a~I 335 (335)
||||+++|||+|+|
T Consensus 341 iAGk~i~ANP~A~I 354 (427)
T 3us8_A 341 QKGEETSTNSIASI 354 (427)
T ss_dssp HTTCCCCCCCHHHH
T ss_pred cCCCCceeCHHHHH
Confidence 99999779999986
No 2
>1lwd_A Isocitrate dehydrogenase; tricarboxylic acid cycle, oxidoreductase, NADP; HET: ICT; 1.85A {Sus scrofa} SCOP: c.77.1.1 PDB: 1t0l_A* 1t09_A* 3mas_B* 3map_A* 3mar_A* 3mas_A* 3inm_A* 2cmj_A* 2cmv_A*
Probab=100.00 E-value=4.5e-102 Score=769.95 Aligned_cols=333 Identities=71% Similarity=1.187 Sum_probs=292.5
Q ss_pred CCccccccccEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecchhhhhccCCcccHHHHHHHHhcCeeeecCCCCCC
Q 019837 2 AFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPD 81 (335)
Q Consensus 2 ~~~~~~m~~~I~vipGDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~lkg~~~~p~ 81 (335)
+.+||||+++|++|||||||||||+++++++..++++|+|+++++|++++++||++||++|+++|+++|++||||+++|.
T Consensus 1 ~~~~i~~~~~i~~l~GDgiGpei~~~~~~vl~~~~~~~~~~~~~~G~~~~~~~g~~lp~etl~~ik~~da~LkGav~tP~ 80 (413)
T 1lwd_A 1 ADQRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATITPD 80 (413)
T ss_dssp CCCCEECSSCEEEEECCHHHHHHHHHHHHHTTTTTEECCEEEEECSHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCC
T ss_pred CCCcceecccEEEecCCChhHHHHHHHHHHHHhCCCCeEEEEEecCHHHHhccCCcCcHHHHHHHHHCCEEEECCccCCC
Confidence 35799999999999999999999999998888788999999999999999999999999999999999999999999997
Q ss_pred cchhhHHHhhhcCCCcchhHhhhcCceEEeecccccCCCCCCCCCCCCEEEEeeccCccccccceeeeCCCceeeeeecC
Q 019837 82 EARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPE 161 (335)
Q Consensus 82 ~~~~~~~~l~~~~~s~~~~LRk~ldlyanvRPv~~~~~~~~~~~~~~divivREnteg~Y~g~e~~~~~~g~~~~~~~~~ 161 (335)
..+.+++.+.++|+|+|++|||+||||||+||++++++|++.++++.||+|+||||||+|+++|+++.++|..+..|.++
T Consensus 81 ~~~~~~~~~~~~~~s~~l~LR~~ldlyan~RPv~~~~~~~~~~~~~~divIvRe~t~g~Y~g~d~~~~~e~~~~~~~~~~ 160 (413)
T 1lwd_A 81 EARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKIVFTPK 160 (413)
T ss_dssp HHHHHHHTCSSCCCCHHHHHHHHHCSEEEEEECCCTTSCCSSTTCCSCEEEEEECSSGGGGCEEEEECSSEEEEEEEEET
T ss_pred cccCccccccccccCccHHHHHhcCCEEEEeeeeccCCCCCCCCCCCceEEEecccCCccCCceeEeccCCcceeeEecc
Confidence 54333333334789999999999999999999977889888777789999999999999999999998888766677765
Q ss_pred CCCccchhhhccccCccceeeeeeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchhHHHHHHHHHHhhhhccc
Q 019837 162 GKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKF 241 (335)
Q Consensus 162 ~g~~~~~~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r~k~Vt~v~KaNVl~~~~g~f~~~~~eva~~eY~~~~ 241 (335)
+|....+...+.++. ++++++++||++++|||+|+||+||++|+++||+|||+|||+.|+|+|+++|+|||+++|.++|
T Consensus 161 ~g~~~~~~~~~~~~~-~~~~~~~~~T~~~~eRiar~AFe~A~~r~~kVt~v~KaNVlk~sdglf~~~~~eva~~eypd~~ 239 (413)
T 1lwd_A 161 DGSSAKQWEVYNFPA-GGVGMGMYNTDESISGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDF 239 (413)
T ss_dssp TCCCCEEEEEEEESS-CEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHHH
T ss_pred CCcccccccccccCC-CcEEEEEEEcHHHHHHHHHHHHHHHHHhCCceEEEECCcchhhHHHHHHHHHHHHHHHhCCCcc
Confidence 442111112222222 3577788999999999999999999999889999999999999999999999999945994333
Q ss_pred cCCCceEeeeeHHHHHHHHHhCCCCcEEEeCCchhhhHHhhhhhhcCccccccccccCCCCCceeeecCCCCcccccccc
Q 019837 242 EAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVH 321 (335)
Q Consensus 242 ~~p~V~~~~~~VDa~~~~lv~~P~~FViv~~NlfGDILSDlaA~l~GslGlapSanig~~~~~~~fEp~HGSAPdiagk~ 321 (335)
.+.+|+++|+|||+||||||++|++|||||+|||||||||++|+++|||||+||+|||+++.++||||+|||||||+|||
T Consensus 240 ~~~~I~~~~~~VD~~~mqlv~~P~~FVivt~NlfGDILSD~aA~l~GslGl~pSanig~~~~~~~fEpvHGSAPdi~~~~ 319 (413)
T 1lwd_A 240 DKYKIWYEHRLIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYREH 319 (413)
T ss_dssp HHTTCCEEEEEHHHHHHHHHHSCCCEEEEECHHHHHHHHHHHHHHHTCTTSEEEEEECTTSSCEEEECCSCCCHHHHHHH
T ss_pred cCCeEEEEEEEHHHHHHHHhcCCCceEEEecccccchHHHHHHhhcCCccccccceeCCCCCceEEeCCCCChhhhhhhh
Confidence 33349999999999999999999999999999999999999999999999999999998763389999999999999999
Q ss_pred cCCCCCCCCccccC
Q 019837 322 QKDDQGSCTYYPWI 335 (335)
Q Consensus 322 ~aGk~~~aNP~a~I 335 (335)
+|||+++|||+|||
T Consensus 320 ~aGk~~~ANP~A~I 333 (413)
T 1lwd_A 320 QKGRPTSTNPIASI 333 (413)
T ss_dssp HTTCCCCCCCHHHH
T ss_pred hcCCCCccChHHHH
Confidence 99999669999986
No 3
>2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation, thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A {Desulfotalea psychrophila} PDB: 2uxr_A*
Probab=100.00 E-value=3.6e-101 Score=761.21 Aligned_cols=328 Identities=48% Similarity=0.838 Sum_probs=285.4
Q ss_pred cccccccEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecchhhhhccCCcccHHHHHHHHhcCeeeecCCCCCCcch
Q 019837 5 KIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEAR 84 (335)
Q Consensus 5 ~~~m~~~I~vipGDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~lkg~~~~p~~~~ 84 (335)
||||+++|++|||||||||||+++++++..++++|+|+++++|++++++||++||++|+++|+++|++||||+++|...+
T Consensus 2 ~~~~~~~i~~i~GDgig~ei~~~~~~vl~~~~~~~~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~LkGav~tP~~~~ 81 (402)
T 2uxq_A 2 KIQMKTPLVELDGDEMTRVLWPLIKDKLLLPFIDLQTEYYDLGIEERDRTNDQITIDAAEAIKKYGVGVKNATITPNQDR 81 (402)
T ss_dssp CBCCSSCEEEEECCHHHHHHHHHHHHHHTTTTBCCCEEEEECSHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCHHH
T ss_pred ceeeecceEEecCCCccHHHHHHHHHHHHhCCCCeEEEEEecCHHHHHhhCCcCCHHHHHHHHhCCEEEECCccCCCccc
Confidence 79999999999999999999999998888889999999999999999999999999999999999999999999997543
Q ss_pred hhHHHhhhcCCCcchhHhhhcCceEEeecccccCCCCCCCCCCCCEEEEeeccCccccccceeeeCCCceeeeeecCCCC
Q 019837 85 VKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKD 164 (335)
Q Consensus 85 ~~~~~l~~~~~s~~~~LRk~ldlyanvRPv~~~~~~~~~~~~~~divivREnteg~Y~g~e~~~~~~g~~~~~~~~~~g~ 164 (335)
.+++.+.++|+|+|++|||+||||||+||++++++|++.++++.||+|+||||||+|+|+|+++.++|..+..|..+.|.
T Consensus 82 ~~~~~~~~~~~s~~l~LR~~ldlyan~RPv~~~~~~~~~~~~~~divIvRE~teg~Y~g~e~~~~~~g~~~~~~~~~~g~ 161 (402)
T 2uxq_A 82 VEEYGLKEQWKSPNATVRAMLDGTVFRKPIMVKNIKPSVRSWQKPIVVGRHAYGDFYKNAEIFAEAGGKLEIVVTDKNGK 161 (402)
T ss_dssp HHHHTCSSCCCCHHHHHHHHHCCEEEEEECCCTTCCCSBTTCCSCCEEEEECSCGGGGCEEEEETTCEEEEEEEECTTSC
T ss_pred CccccccccccCchHHHHHHhCCeEEEEEEEcCCCCCCCCCCCCCeEEEeccCCCcccCcceeeccCCcceeeeeccCCc
Confidence 33443434789999999999999999999977888877666779999999999999999999986666544445544331
Q ss_pred ccchhhhccccCccceeeeeeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchhHHHHHHHHHHhhhhccccCC
Q 019837 165 EKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAA 244 (335)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r~k~Vt~v~KaNVl~~~~g~f~~~~~eva~~eY~~~~~~p 244 (335)
..+...+.++. ++++++++||++++|||+|+||+||++|+++||+|||+|||+.|+|+||++|+|||+++|.++|.+.
T Consensus 162 -~~~~~~~~~~~-~~~~~~~~~T~~~~eRiar~AFe~A~~r~~kVt~v~KaNVlk~sdglf~~~~~eva~~eypd~~~~~ 239 (402)
T 2uxq_A 162 -ETRQTIMEVDE-PAIVQGIHNTVASIGHFARACFEYSLDQKIDCWFATKDTISKQYDQRFKIIFEEIFAQEYKEKFAAA 239 (402)
T ss_dssp -EEEEEEEEESS-CEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred -cccccccccCC-CceEEEEEECHHHHHHHHHHHHHHHHHcCCcEEEEECCCcchhhHHHHHHHHHHHHHHhCCCcccCC
Confidence 11111222222 3577788899999999999999999999889999999999999999999999999945992222222
Q ss_pred CceEeeeeHHHHHHHHHhCCCCcEEEeCCchhhhHHhhhhhhcCccccccccccCCCCCceeeecCCCCcccccccccCC
Q 019837 245 GIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKD 324 (335)
Q Consensus 245 ~V~~~~~~VDa~~~~lv~~P~~FViv~~NlfGDILSDlaA~l~GslGlapSanig~~~~~~~fEp~HGSAPdiagk~~aG 324 (335)
+|+++|+|||+||||||++|++|||||+|||||||||++|+++|||||+||+|+|+++ .+||||+|||||||+|||+||
T Consensus 240 ~I~~~~~~vD~~~mqlv~~P~~fVivt~NlfGDIlSD~aA~l~GslGl~pSanig~~~-~~lfEpvHGSAPdi~~~~~aG 318 (402)
T 2uxq_A 240 GIEYFYTLIDDVVARMMKTEGGMLWACKNYDGDVMSDMVASAFGSLAMMSSVLVSPYG-YFEYEAAHGTVQRHYYQHLKG 318 (402)
T ss_dssp TCCEEEEEHHHHHHHHTTCCCCSEEEECHHHHHHHHHHHHHHHTCTTSEEEEEECTTS-CEEEECCSCCCHHHHHHHHTT
T ss_pred eEEEEEEEHHHHHHHHccCCCceEEEEcccchHHHHHHHHHhcCCccccccceecCCC-CeEEeCCCCChhhhhhhhhcC
Confidence 2999999999999999999999999999999999999999999999999999999886 489999999999999999999
Q ss_pred CCCCCCccccC
Q 019837 325 DQGSCTYYPWI 335 (335)
Q Consensus 325 k~~~aNP~a~I 335 (335)
|+++|||+|||
T Consensus 319 k~~~ANP~A~I 329 (402)
T 2uxq_A 319 ERTSTNPVALI 329 (402)
T ss_dssp CCCCCCCHHHH
T ss_pred CCcccCcHHHH
Confidence 99569999986
No 4
>4aoy_A Isocitrate dehydrogenase [NADP]; oxidoreductase, temperature adaptation, thermophilic, psychr NADP+ selectivity, domain movements; 2.35A {Clostridium thermocellum} PDB: 4aou_A
Probab=100.00 E-value=2.7e-101 Score=760.30 Aligned_cols=330 Identities=55% Similarity=0.926 Sum_probs=275.1
Q ss_pred CccccccccEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecchhhhhccCCcccHHHHHHHHhcCeeeecCCCCCCc
Q 019837 3 FQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDE 82 (335)
Q Consensus 3 ~~~~~m~~~I~vipGDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~lkg~~~~p~~ 82 (335)
|.||||.++|++|||||||||+|+.+++++..++++|+|+++++|.+++++||+++|++++++|+++|++||||++||..
T Consensus 1 ~~~i~~~~~i~~i~GDei~~e~~~~i~~v~~~~~~~i~~~~~d~G~~~~~~tg~~lp~etl~aik~~~v~lkGa~~tP~~ 80 (402)
T 4aoy_A 1 MSKIKMKVPLVEMDGDEMTRIIWRLIKENLLEPYIELNTEYYDLGLENRDKTEDQVTIDAARAIQKYGVGVKCATITPNA 80 (402)
T ss_dssp -CCEECSSCEEEEECCHHHHHHHHHHHHHHTTTTEECCEEEEECCHHHHHHHTTHHHHHHHHHHHHHSEEEECCCCCCCH
T ss_pred CCcccccCcEEEECCCchHHHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHhhCCcCCHHHHHHHHHCCEEEECcccCCCc
Confidence 68999999999999999999999999988888899999999999999999999999999999999999999999999987
Q ss_pred chhhHHHhhhcCCCcchhHhhhcCceEEeecccccCCCCCCCCCCCCEEEEeeccCccccccceeeeCCCceeeeeecCC
Q 019837 83 ARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEG 162 (335)
Q Consensus 83 ~~~~~~~l~~~~~s~~~~LRk~ldlyanvRPv~~~~~~~~~~~~~~divivREnteg~Y~g~e~~~~~~g~~~~~~~~~~ 162 (335)
.+.+++.|.++|+|+|++|||.||||||+||+.++++|++.++|+.||||+||||||+|+|+||+...++..+..|..+.
T Consensus 81 ~~~~~~~l~~~~~s~n~~LR~~Ldlyan~rPv~~~~i~~~~~~~~~DivIvREnteg~Y~g~e~~~~~~~~~~~~~~~~~ 160 (402)
T 4aoy_A 81 QRVEEYNLKKMWKSPNGTIRAILDGTVFRAPIVVNSIKPFVKGWKKPISIARHAYGDVYKNVEYYVPSAGKAELVFTSEN 160 (402)
T ss_dssp HHHHHTTCSSCCCCHHHHHHHHHTCEEEEEECCCTTSCCSBTTCCBCCEEEEC------CCEEEEECSCEEEEEEEEETT
T ss_pred cccccccccccccChHHHHHHHhCCeEEeeeEeccCCCCcCCCCCCCEEEEEeccCCeecCceeeccCccceeeeeeccC
Confidence 66666666778999999999999999999998668888777777789999999999999999999877777776677665
Q ss_pred CCccchhhhccccCccceeeeeeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchhHHHHHHHHHHhhhhcccc
Q 019837 163 KDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFE 242 (335)
Q Consensus 163 g~~~~~~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r~k~Vt~v~KaNVl~~~~g~f~~~~~eva~~eY~~~~~ 242 (335)
|.. .+.++.++++ +++++++++|+++++||+|+||+||++|+++||++||+|||+.|||+|+++|+|||+++|.++|.
T Consensus 161 g~~-~~~~~~~~~~-~gv~~~~~~t~~~~eRiar~AF~~A~~~~~~vt~v~KaNilk~tdglf~~~~~eva~~eyp~~~~ 238 (402)
T 4aoy_A 161 GEV-SRQTIHEFDG-PGVIMGMHNTDKSIRSFARACFNYALDMNQDLWFSTKDTISKTYDHRFKDIFQEIYENEYKEKFE 238 (402)
T ss_dssp SCE-EEEEEEEESS-CEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTSHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred Ccc-cccccccccC-CeeEEEEEecHHHHHHHHHHHHHHHHHcCCcEEEEECCccchhhhhHHHHHHHHHHHHhCccccc
Confidence 532 1112333432 46788889999999999999999999999999999999999999999999999999559977777
Q ss_pred CCCceEeeeeHHHHHHHHHhCCCCcEEEeCCchhhhHHhhhhhhcCccccccccccCCCCCceeeecCCCCccccccccc
Q 019837 243 AAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQ 322 (335)
Q Consensus 243 ~p~V~~~~~~VDa~~~~lv~~P~~FViv~~NlfGDILSDlaA~l~GslGlapSanig~~~~~~~fEp~HGSAPdiagk~~ 322 (335)
+|+|+++|+|||+|+||||++|++|||||+|||||||||++|+++|||||+||+|+|+++ .+||||+|||||||+||||
T Consensus 239 ~~~i~~~~~~vD~~~~~lv~~P~~fVivt~Nl~GDIlSD~~A~l~GslGl~psanig~~~-~~~fEp~HGSApd~~~~~i 317 (402)
T 4aoy_A 239 AKNLQYFYTLIDDAVARIIRSEGGMVWACKNYDGDVMSDMVASAFGSLAMMTSVLVSPDG-KYEFEAAHGTVTRHYYKHL 317 (402)
T ss_dssp HTTCCEEEEEHHHHHHHHHTSCBCSEEECCC-CHHHHHHHHHHHHSCTTSEEEEEECTTC-CEEEEC-------------
T ss_pred CCCeEEEEEEHHHHHHHHhhCCCCcEEEECCcchHHHHHHHHHhcCchhhccccccCCCC-ceEEeeccCCccccchhhc
Confidence 779999999999999999999999999999999999999999999999999999999887 5999999999999999999
Q ss_pred CCCCCCCCccccC
Q 019837 323 KDDQGSCTYYPWI 335 (335)
Q Consensus 323 aGk~~~aNP~a~I 335 (335)
|||+++|||+|+|
T Consensus 318 aGk~~~aNP~A~I 330 (402)
T 4aoy_A 318 KGEETSTNSMATI 330 (402)
T ss_dssp ----CCCCCHHHH
T ss_pred cCCCcCcCcHHHH
Confidence 9999779999986
No 5
>1zor_A Isocitrate dehydrogenase; wild type enzyme, CIS-proline, thermostable, oxidoreductase; 2.24A {Thermotoga maritima}
Probab=100.00 E-value=1.6e-100 Score=756.41 Aligned_cols=322 Identities=54% Similarity=0.917 Sum_probs=287.4
Q ss_pred CccccccccEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecchhhhhccCCcccHHHHHHHHhcCeeeecCCCCCCc
Q 019837 3 FQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDE 82 (335)
Q Consensus 3 ~~~~~m~~~I~vipGDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~lkg~~~~p~~ 82 (335)
|+||||++||++|||||||||||+++++++..++++|+|+++++|++++++||++||++|+++|+++|++||||+++|..
T Consensus 1 ~~~~~~~~~I~~l~GDgiG~ei~~~v~~~l~~~~~~~~~~~~~~G~~~~~~~g~~lp~etl~~ik~~da~lkGav~tP~~ 80 (399)
T 1zor_A 1 MEKVKVKNPIVELDGDEMARVMWKMIKEKLILPYLDIQLVYFDLGIKKRDETDDQITIEAAKAIKKYGVGVKCATITPDA 80 (399)
T ss_dssp CCCEECCSCEEEEECCHHHHHHHHHHHHHHTTTTEECCEEEEECCHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCH
T ss_pred CCcccccccEEEecCCcccHHHHHHHHHHHHhCCCCeEEEEEeCCHHHHhccCCcCcHHHHHHHHHCCEEEEcCccCCCc
Confidence 57999999999999999999999999988888899999999999999999999999999999999999999999999974
Q ss_pred chhhHHHhhhcCCCcchhHhhhcCceEEeecccccCCCCCCCCCCCCEEEEeeccCccccccceeeeCCCceeeeeecCC
Q 019837 83 ARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEG 162 (335)
Q Consensus 83 ~~~~~~~l~~~~~s~~~~LRk~ldlyanvRPv~~~~~~~~~~~~~~divivREnteg~Y~g~e~~~~~~g~~~~~~~~~~ 162 (335)
.+.+++.+.++|+|+|++|||+||||||+||++++++|++.++++.||+|+||||||+|+++++.+.++|+.+..|.++.
T Consensus 81 ~~~~~~~~~~~~~s~~l~LR~~ldlyan~RPv~~~~~~~~~~~~~~divi~Re~t~g~Y~g~d~~~~~e~t~~~~y~~e~ 160 (399)
T 1zor_A 81 ERVKEYNLKKAWKSPNATIRAYLDGTVFRKPIMVKNVPPLVKRWKKPIIIGRHAYGDIYNAVEAKVEGPAEVELVVRNKE 160 (399)
T ss_dssp HHHHHHTCSSCCCCHHHHHHHHHTCEEEEEECCBTTBCCSBTTCCSCCEEEECCSSGGGGCEEEEECSSEEEEEEEESSS
T ss_pred ccCccccccccccCchHHHHHHhCCEEEEEEeecCCCCCcccCcCccceeeecccCCCcCCceeEecCCCcceeeEeccc
Confidence 33333333346899999999999999999999878888777777799999999999999999999888887667777531
Q ss_pred CCccchhhhccccCccceeeeeeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchhHHHHHHHHHHh---hhhc
Q 019837 163 KDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEA---NWKS 239 (335)
Q Consensus 163 g~~~~~~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r~k~Vt~v~KaNVl~~~~g~f~~~~~eva~~---eY~~ 239 (335)
+ .+....++++ +++++++++|++++|||+|+||+||++|+++||+|||+|||+.|+|+|+++|+|||++ +|
T Consensus 161 ~---~~~~~~~~~~-~~~~~~~~~T~~~~eRiar~AFe~A~~r~~kVt~v~KaNvlk~sdglf~~~~~eva~~~~~~y-- 234 (399)
T 1zor_A 161 N---KTLLVHKFEG-NGVVMAMHNLEKSIRSFAQSCINYAISEKVDIWFATKDTISKVYHAYFKDIFQEEVDKRKEEL-- 234 (399)
T ss_dssp C---EEEEEEEESS-CEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTCTTHHHHHHHHHHHHHHHTHHHH--
T ss_pred c---ccceeeccCC-ceEEEEEEecHHHHHHHHHHHHHHHHHhCCeEEEEECcccHHHHHHHHHHHHHHHHHhhcccC--
Confidence 1 1112222222 3577788899999999999999999999889999999999999999999999999942 77
Q ss_pred cccCC--CceEeeeeHHHHHHHHHhCCCCcEEEeCCchhhhHHhhhhhhcCccccccccccCCCCCceeeecCCCCcccc
Q 019837 240 KFEAA--GIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRH 317 (335)
Q Consensus 240 ~~~~p--~V~~~~~~VDa~~~~lv~~P~~FViv~~NlfGDILSDlaA~l~GslGlapSanig~~~~~~~fEp~HGSAPdi 317 (335)
| +|+++|+|||+||||||++|++|||||+|||||||||++|+++|||||+||+|||+++ .+||||+|||||||
T Consensus 235 ----p~~~I~~~~~~vD~~~mqlv~~P~~fVivt~NlfGDIlSD~aA~l~GslGl~pSanig~~~-~~~fEpvHGSAPdi 309 (399)
T 1zor_A 235 ----EKAGVNYRYMLIDDAAAQILRSEGGMLWACMNYEGDIMSDMIASGFGSLGLMTSVLVSPDG-VYEFEAAHGTVRRH 309 (399)
T ss_dssp ----HHTTCCEEEEEHHHHHHHHHHSCCCSEEEECHHHHHHHHHHHHHHHCCGGGEEEEEECTTC-CEEEEESSCCCHHH
T ss_pred ----CCCcEEEEEEEHHHHHHHhccCCCceEEEEccchHHHHHHHHHHhcCCccccceeEecCCC-CeEEeCCCCccccc
Confidence 8 4999999999999999999999999999999999999999999999999999999886 48999999999999
Q ss_pred cccccCCCCCCCCccccC
Q 019837 318 YRVHQKDDQGSCTYYPWI 335 (335)
Q Consensus 318 agk~~aGk~~~aNP~a~I 335 (335)
+||||||||++|||+|+|
T Consensus 310 ~~~~iaGk~~~ANP~A~I 327 (399)
T 1zor_A 310 YYRYLKGEKTSTNPTASI 327 (399)
T ss_dssp HHHHTTTCCCCCCCHHHH
T ss_pred chhhhcCCCCccCcHHHH
Confidence 999999999559999986
No 6
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosyn; 1.85A {Thermus thermophilus} PDB: 3asj_A* 3ah3_A
Probab=100.00 E-value=7e-96 Score=706.37 Aligned_cols=274 Identities=18% Similarity=0.160 Sum_probs=249.9
Q ss_pred cccEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecchhhhhccCCcccHHHHHHHHhcCeeeecCCCCCCcchhhHH
Q 019837 9 ANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEF 88 (335)
Q Consensus 9 ~~~I~vipGDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~lkg~~~~p~~~~~~~~ 88 (335)
+++|+||||||||||||+++++++.+.+++|+|+++++|++++++||+++|++++++|+++|++||||+++|....
T Consensus 1 ~~~I~vipGDGIGpEv~~~a~~vl~a~~~~~~~~~~~~G~~~~~~~g~~lp~~tl~~~~~~da~l~Gav~~P~~~~---- 76 (333)
T 1x0l_A 1 AYRICLIEGDGIGHEVIPAARRVLEATGLPLEFVEAEAGWETFERRGTSVPEETVEKILSCHATLFGAATSPTRKV---- 76 (333)
T ss_dssp CEEEEEEEESTTHHHHHHHHHHHHHTTTCCEEEEEECCSHHHHHHHSSSSCHHHHHHHHTSSEEEEEECCCCSSCC----
T ss_pred CcEEEEECCCCcCHHHHHHHHHHHHHcCCCeEEEEEecchHHHHhhCCcCcHHHHHHHHHCCEEEECCccCCCCCC----
Confidence 3689999999999999999998777779999999999999999999999999999999999999999999996321
Q ss_pred HhhhcCCCcchhHhhhcCceEEeecccccCCCCCCCCC-CCCEEEEeeccCccccccceeeeCCCceeeeeecCCCCccc
Q 019837 89 VLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGW-TKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKT 167 (335)
Q Consensus 89 ~l~~~~~s~~~~LRk~ldlyanvRPv~~~~~~~~~~~~-~~divivREnteg~Y~g~e~~~~~~g~~~~~~~~~~g~~~~ 167 (335)
.+|+|+|++|||+||||||+||+ +++| +.+.. +.||+||||||||+|+|.++. . +
T Consensus 77 ---~~~~s~~l~lR~~ldlyan~RP~--~~~p-~~s~~~~vD~vivREnteg~Y~g~~~~-~-~---------------- 132 (333)
T 1x0l_A 77 ---PGFFGAIRYLRRRLDLYANVRPA--KSRP-VPGSRPGVDLVIVRENTEGLYVEQERR-Y-L---------------- 132 (333)
T ss_dssp ---TTCCCHHHHHHHHTTCCEEEEEE--ECCS-STTCCSSCEEEEEEECGGGTCCCCEEE-E-T----------------
T ss_pred ---cCccChhHHHHHHcCCEEEEEEE--eecc-CCCCCCCCCEEEEecCccceecccccc-C-C----------------
Confidence 25889999999999999999998 6777 65444 479999999999999998754 1 1
Q ss_pred hhhhccccCccceeeeeeeCHHHHHHHHHHHHHHHHhC-CCCEEEEeCCCcccccchhHHHHHHHHHHhhhhccccCCCc
Q 019837 168 ELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQK-KWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGI 246 (335)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r-~k~Vt~v~KaNVl~~~~g~f~~~~~eva~~eY~~~~~~p~V 246 (335)
..+..+++||++++|||+|+||+||++| +|+||++||+|||+.|+|+|+++|+||| ++| |+|
T Consensus 133 ----------~~a~~~~~~T~~~~eRiar~AF~~A~~r~rkkvt~v~KaNvlk~t~glf~~~~~eva-~ey------p~I 195 (333)
T 1x0l_A 133 ----------DVAIADAVISKKASERIGRAALRIAEGRPRKTLHIAHKANVLPLTQGLFLDTVKEVA-KDF------PLV 195 (333)
T ss_dssp ----------TEEEEEEEEEHHHHHHHHHHHHHHHHTSTTCEEEEEECTTTCTTHHHHHHHHHHHHH-TTC------TTS
T ss_pred ----------CeEEEEEEecHHHHHHHHHHHHHHHHhcCCCeEEEEecCccchhhhHHHHHHHHHHH-HHC------CCc
Confidence 1244578999999999999999999999 5789999999999999999999999999 599 999
Q ss_pred eEeeeeHHHHHHHHHhCCCCc-EEEeCCchhhhHHhhhhhhcCccccccccccCCCCCceeeecCCCCcccccccccCCC
Q 019837 247 WYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKDD 325 (335)
Q Consensus 247 ~~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaA~l~GslGlapSanig~~~~~~~fEp~HGSAPdiagk~~aGk 325 (335)
+++|+|||+|+||||++|++| ||||+|||||||||++|+++|||||+||+|+|++. +||||+|||||||| ||
T Consensus 196 ~~~~~~vD~~~m~lv~~P~~FDVivt~NlfGDIlSD~aa~l~GslGl~psanig~~~--a~fEp~HGSAPdia-----Gk 268 (333)
T 1x0l_A 196 NVQDIIVDNCAMQLVMRPERFDVIVTTNLLGDILSDLAAGLVGGLGLAPSGNIGDTT--AVFEPVHGSAPDIA-----GK 268 (333)
T ss_dssp EEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHTTCSTTCEEEEECSSC--EEEEESSCCCGGGT-----TS
T ss_pred eEEEEEHHHHHHHHhhCcccceEEEEcCccchhHhHHHHhhcCCcccceeeEECCCc--eEEeCCCCChhhhc-----CC
Confidence 999999999999999999999 99999999999999999999999999999999764 89999999999996 66
Q ss_pred CCCCCccccC
Q 019837 326 QGSCTYYPWI 335 (335)
Q Consensus 326 ~~~aNP~a~I 335 (335)
|+ |||+|||
T Consensus 269 ~i-ANP~A~I 277 (333)
T 1x0l_A 269 GI-ANPTAAI 277 (333)
T ss_dssp SC-CCCHHHH
T ss_pred CC-cCcHHHH
Confidence 75 9999986
No 7
>3u1h_A 3-isopropylmalate dehydrogenase; oxidored; 2.80A {Bacillus SP} PDB: 2ayq_A 1v53_A 1v5b_A
Probab=100.00 E-value=2.9e-96 Score=719.02 Aligned_cols=288 Identities=19% Similarity=0.174 Sum_probs=243.7
Q ss_pred CccccccccEEEECCCCchHHHHHHHHHHHhcC----CCceEEEEEecchhhhhccCCcccHHHHHHHHhcCeeeecCCC
Q 019837 3 FQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFP----FLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATI 78 (335)
Q Consensus 3 ~~~~~m~~~I~vipGDGIGpEv~~~~~~~~~~~----~~~i~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~lkg~~~ 78 (335)
||. +|.++|++|||||||||||+++++++.+. +++|+|+++++|+++++++|++||++|+++|+++|++||||++
T Consensus 18 ~~~-~M~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~g~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~daiL~Gavg 96 (390)
T 3u1h_A 18 FQG-AMKKKIAVLPGDGIGPEVMEAAIEVLKAVAERFGHEFEFEYGLIGGAAIDEAGTPLPEETLDVCRGSDAILLGAVG 96 (390)
T ss_dssp -------CEEEEEEESTTHHHHHHHHHHHHHHHHHHHSCCCEEEECCCTHHHHHSSSSSSCHHHHHHHHTSSEEEEEECC
T ss_pred ccc-CccceEEEECCCccCHHHHHHHHHHHHHHHHhcCCCeEEEEEEcCHHHHHhhCCcCCHHHHHHHHHCCEEEECCcC
Confidence 444 69999999999999999999999766443 7999999999999999999999999999999999999999999
Q ss_pred CCCcchhhHHHhhhcCCCcchhHhhhcCceEEeecccccCCCCCC--CCC------CCCEEEEeeccCccccccceeeeC
Q 019837 79 TPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLI--PGW------TKPICIGRHAFGDQYRATDTVIQG 150 (335)
Q Consensus 79 ~p~~~~~~~~~l~~~~~s~~~~LRk~ldlyanvRPv~~~~~~~~~--~~~------~~divivREnteg~Y~g~e~~~~~ 150 (335)
+|.....+. ...+.|.|++|||+||||||+||+ +++|++. +++ ++|||||||||||+|+|.++....
T Consensus 97 ~P~~~~~~~---~~~~~~~ll~LRk~ldLyANvRP~--k~~pg~~~~splk~~~~~~vD~vIVREnTeG~Y~g~~~~~~~ 171 (390)
T 3u1h_A 97 GPKWDQNPS---ELRPEKGLLGIRKGLDLFANLRPV--KVYDSLADASPLKKEVIEGVDLVIVRELTGGLYFGEPSERYE 171 (390)
T ss_dssp CSTTTSSCC---SSSSSCCHHHHHHHTTEEEEEEEE--ECCGGGTTSSSBCHHHHSSCEEEEEEECSSBSCC-------C
T ss_pred CCCcCCCCc---ccCccchHHHHHHHhCCeEEEEEe--eccCCccccCCcccccccCCcEEEEeeCCCCeecCccccccC
Confidence 985311000 012347899999999999999998 6677664 322 579999999999999998765321
Q ss_pred CCceeeeeecCCCCccchhhhccccCccceeeeeeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchhHHHHHH
Q 019837 151 PGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQ 230 (335)
Q Consensus 151 ~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r~k~Vt~v~KaNVl~~~~g~f~~~~~ 230 (335)
+|. +.+..+++|||+++|||+|+||+||++|+|+||+|||+||| .++|+||++|+
T Consensus 172 ~g~------------------------~~a~~~~~~Tr~~~eRIar~AFe~A~~rrkkVT~v~KaNVl-~t~glfr~~~~ 226 (390)
T 3u1h_A 172 EGE------------------------EAAVDTLLYTREEIERIIRKAFELALTRKKKVTSVDKANVL-ESSRLWREVAE 226 (390)
T ss_dssp TTC------------------------SEEEEEEEEEHHHHHHHHHHHHHHHHTTTSEEEEEECTTTC-HHHHHHHHHHH
T ss_pred CCC------------------------ceEEEEEEecHHHHhHHHHHHHHHHHHcCCceEEEECCccc-ccchHHHHHHH
Confidence 110 12445789999999999999999999999999999999999 69999999999
Q ss_pred HHHHhhhhccccCCCceEeeeeHHHHHHHHHhCCCCc-EEEeCCchhhhHHhhhhhhcCccccccccccCCCCCceeeec
Q 019837 231 EVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEA 309 (335)
Q Consensus 231 eva~~eY~~~~~~p~V~~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaA~l~GslGlapSanig~~~~~~~fEp 309 (335)
||| ++| |+|+++|+|||+||||||++|++| ||||+|||||||||++|+|+|||||+||+|+|+++ ++||||
T Consensus 227 eva-~eY------PdV~~~~~~VD~~amqLV~~P~~FDViVt~NlfGDILSD~aA~l~GslGl~pSanig~~~-~a~fEp 298 (390)
T 3u1h_A 227 EVA-KEY------PDVELEHMLVDNAAMQLIRNPRQFDVIVTENMFGDILSDEASMITGSLGMLPSASLSTDG-LGLYEP 298 (390)
T ss_dssp HHH-TTC------TTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHSCTTTCEEEEEETTS-CEEEEE
T ss_pred HHH-hHC------CCCeEEeeeHHHHHHHHHhCcccCcEEEecccchHHHHHHHHHhcCchhhcceeeecCCC-CeeEec
Confidence 999 599 999999999999999999999999 99999999999999999999999999999999866 699999
Q ss_pred CCCCcccccccccCCCCCCCCccccC
Q 019837 310 AHGTVTRHYRVHQKDDQGSCTYYPWI 335 (335)
Q Consensus 310 ~HGSAPdiagk~~aGk~~~aNP~a~I 335 (335)
+|||||||| |||+ |||+|||
T Consensus 299 vHGSAPDIA-----Gk~i-ANP~A~I 318 (390)
T 3u1h_A 299 VHGSAPDIA-----GKGI-ANPLATI 318 (390)
T ss_dssp SSCCCTTTT-----TSSC-SCTHHHH
T ss_pred CCCChhhhc-----CCCc-CCcHHHH
Confidence 999999997 6676 9999986
No 8
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, ST genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} SCOP: c.77.1.1 PDB: 2g4o_A
Probab=100.00 E-value=2.2e-95 Score=704.36 Aligned_cols=282 Identities=16% Similarity=0.137 Sum_probs=250.4
Q ss_pred ccEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecchhhhhccCCcccHHHHHHHHhcCeeeecCCCCCCcchhhHHH
Q 019837 10 NPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFV 89 (335)
Q Consensus 10 ~~I~vipGDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~lkg~~~~p~~~~~~~~~ 89 (335)
++|+||||||||||||+++++++.+...+|+|+++++|++++++||+++|++|+++|+++|++||||+++|.... +
T Consensus 2 ~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~G~~~~~~~g~~lp~~t~~~~~~~da~l~Gav~~P~~~~--~-- 77 (337)
T 1w0d_A 2 SKLAIIAGDGIGPEVTAEAVKVLDAVVPGVQKTSYDLGARRFHATGEVLPDSVVAELRNHDAILLGAIGDPSVPS--G-- 77 (337)
T ss_dssp CEEEEEEESTTHHHHHHHHHHHHHHHSTTCEEEECCCSHHHHHHHSCSSCHHHHHHHTTSSEEEEEECCCTTSCT--T--
T ss_pred cEEEEeCCCCcCHHHHHHHHHHHHHhcCCcEEEEEecchHHHhhhCCcCCHHHHHHHHHCCEEEECCccCCCCCC--c--
Confidence 689999999999999999997665444469999999999999999999999999999999999999999994211 1
Q ss_pred hhhcCCCcchhHhhhcCceEEeecccccCCCCCCCCCC----CCEEEEeeccCccccccceeeeCCCceeeeeecCCCCc
Q 019837 90 LKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWT----KPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDE 165 (335)
Q Consensus 90 l~~~~~s~~~~LRk~ldlyanvRPv~~~~~~~~~~~~~----~divivREnteg~Y~g~e~~~~~~g~~~~~~~~~~g~~ 165 (335)
..|+|+|++|||+||||||+||+ +++|++.++++ .||+||||||||+|+|.++... .|. .
T Consensus 78 --~~~~s~~l~lR~~ldlyan~RP~--~~~pg~~s~l~~~~~~DivivREnteg~Y~g~e~~~~-~g~-----------~ 141 (337)
T 1w0d_A 78 --VLERGLLLRLRFELDHHINLRPA--RLYPGVASPLSGNPGIDFVVVREGTEGPYTGNGGAIR-VGT-----------P 141 (337)
T ss_dssp --HHHHHTHHHHHHHTTCCEEEEEE--ECCTTCCCSBTTCCCCEEEEEEECSCSGGGCCEEEES-TTS-----------T
T ss_pred --ccccchHHHHHHHcCCEEEEEEe--ecCCCCCCcccCCCCCcEEEEecCCCCeecCCcceec-CCC-----------C
Confidence 12578899999999999999998 67777765553 7999999999999999987642 221 0
Q ss_pred cchhhhccccCccceeeeeeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchhHHHHHHHHHHhhhhccccCCC
Q 019837 166 KTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAG 245 (335)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r~k~Vt~v~KaNVl~~~~g~f~~~~~eva~~eY~~~~~~p~ 245 (335)
++.+..+++||++++|||+|+||+||++|+++||+|||+|||+.|+|+|+++|+||| ++| |+
T Consensus 142 -----------~~~a~~~~~~T~~~~eRiar~AFe~A~~rrkkVt~v~KaNvlk~s~glf~~~~~eva-~ey------p~ 203 (337)
T 1w0d_A 142 -----------NEVATEVSVNTAFGVRRVVADAFERARRRRKHLTLVHKTNVLTFAGGLWLRTVDEVG-ECY------PD 203 (337)
T ss_dssp -----------TCEEEEEEEEEHHHHHHHHHHHHHHHHHTTSEEEEEECTTTSHHHHHHHHHHHHHHH-TTC------TT
T ss_pred -----------CCeEEEEEEEcHHHHHHHHHHHHHHHHHcCCeEEEEECCccchhhhHHHHHHHHHHH-HHC------Cc
Confidence 012445799999999999999999999998899999999999999999999999999 599 99
Q ss_pred ceEeeeeHHHHHHHHHhCCCCc-EEEeCCchhhhHHhhhhhhcCccccccccccCCCCC-ceeeecCCCCcccccccccC
Q 019837 246 IWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGK-TIEAEAAHGTVTRHYRVHQK 323 (335)
Q Consensus 246 V~~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaA~l~GslGlapSanig~~~~-~~~fEp~HGSAPdiagk~~a 323 (335)
|+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+||+|+|+++. ++||||+||||||||
T Consensus 204 i~~~~~~vD~~~mqlv~~P~~FDVivt~NlfGDIlSD~aa~l~GslGl~psanig~~~~~~a~fEp~HGSAPdiA----- 278 (337)
T 1w0d_A 204 VEVAYQHVDAATIHMITDPGRFDVIVTDNLFGDIITDLAAAVCGGIGLAASGNIDATRANPSMFEPVHGSAPDIA----- 278 (337)
T ss_dssp SEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHTTCGGGCEEEEECTTCSSCEEEEESSCCCGGGT-----
T ss_pred eEEEEEEHHHHHHHHhhCcccccEEEECcchhHHHHHHHhhhcCCcccCceeEeCCCCCCceEEecCCCChhhhC-----
Confidence 9999999999999999999999 999999999999999999999999999999998641 589999999999996
Q ss_pred CCCCCCCccccC
Q 019837 324 DDQGSCTYYPWI 335 (335)
Q Consensus 324 Gk~~~aNP~a~I 335 (335)
|||+ |||+|||
T Consensus 279 Gk~i-ANP~A~I 289 (337)
T 1w0d_A 279 GQGI-ADPTAAI 289 (337)
T ss_dssp TSSC-SCCHHHH
T ss_pred CCCC-cCCHHHH
Confidence 6675 9999986
No 9
>2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase; HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A* 2qfx_A* 2qfv_A*
Probab=100.00 E-value=5.5e-95 Score=721.45 Aligned_cols=331 Identities=67% Similarity=1.080 Sum_probs=281.4
Q ss_pred CccccccccEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecchhhhhccCCcccHHHHHHHHhcCeeeecCCCCCCc
Q 019837 3 FQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDE 82 (335)
Q Consensus 3 ~~~~~m~~~I~vipGDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~lkg~~~~p~~ 82 (335)
++||||.++|++||||||||||++++.+.++.++++|+|+++++|++++++||++||++++++|+++|++||||+++|..
T Consensus 16 ~~k~~~~~~I~~l~GDgig~evl~~~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~et~~ai~~~da~lkGav~tP~~ 95 (427)
T 2qfy_A 16 FSKIKVKQPVVELDGDEMTRIIWDKIKKKLILPYLDVDLKYYDLSVESRDATSDKITQDAAEAIKKYGVGIKCATITPDE 95 (427)
T ss_dssp CCCEECSSCEEEEECCHHHHHHHHHHHHHHTTTTEECCEEEEECSHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCH
T ss_pred cccccceeeEEEecCCCHHHHHHHHHHHHhccCCCceEEEEEecChHHHhccCCcCcHHHHHHHHHCCEEEECCcCCCCC
Confidence 57999999999999999999999999877777789999999999999999999999999999999999999999999976
Q ss_pred chhhHHHhhhcCCCcchhHhhhcCceEEeecccccCCCCCCCCCCCCEEEEeeccCccccccceeeeCCCceeeeee-cC
Q 019837 83 ARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFV-PE 161 (335)
Q Consensus 83 ~~~~~~~l~~~~~s~~~~LRk~ldlyanvRPv~~~~~~~~~~~~~~divivREnteg~Y~g~e~~~~~~g~~~~~~~-~~ 161 (335)
.+++|++|.++|+|+|++||+.||||+|+||++++++|++.++|+.+++|+||+++|.|.++++++.++++ +++|. .+
T Consensus 96 ~~~~e~~l~~~~~s~~~~lR~~ldlyan~RP~~~~~~~~l~~g~~~pl~i~R~~~g~~y~~~D~vivREnt-eg~Y~~~e 174 (427)
T 2qfy_A 96 ARVKEFNLHKMWKSPNGTIRNILGGTVFREPIVIPRIPRLVPRWEKPIIIGRHAHGDQYKATDTLIPGPGS-LELVYKPS 174 (427)
T ss_dssp HHHHHTTCSSCCCCHHHHHHHHHCSEEEEEECCCTTSCCSSTTCCEEEEEEEECSSGGGGCEEEEECSSEE-EEEEEEES
T ss_pred cccchhhhcccccchHHHHHHhcCCEEEecccccccchhhccCCCCCeeEeecccCCccCCeeEEEeccCc-cceeeecc
Confidence 55545555567999999999999999999999888898887777678888888888888888888777766 45544 11
Q ss_pred C--CCccchhhhccccCccceeeeeeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchhHHHHHHHHHHhhhhc
Q 019837 162 G--KDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKS 239 (335)
Q Consensus 162 ~--g~~~~~~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r~k~Vt~v~KaNVl~~~~g~f~~~~~eva~~eY~~ 239 (335)
. |....+....++++ .++...+++|++++|||+|+||+||++|+++||+|||+|||+.|+|+||++|+|||+++|.+
T Consensus 175 ~teG~~~~~~~~~~~~~-~~v~~~~~~T~~~ieRIar~AFe~A~~r~~kVt~v~KaNVlk~s~glfr~v~~eva~~eYpd 253 (427)
T 2qfy_A 175 DPTTAQPQTLKVYDYKG-SGVAMAMYNTDESIEGFAHSSFKLAIDKKLNLFLSTKNTILKKYDGRFKDIFQEVYEAQYKS 253 (427)
T ss_dssp CTTTSCCEEEEEEEESS-CEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHH
T ss_pred ccCCccccccccccCCC-ceEEEEEEEcHHHHHHHHHHHHHHHHHhCCceEEEECCccchhhhHHHHHHHHHHHHHhCCC
Confidence 1 21101101111111 34554478999999999999999999999999999999999999999999999998459922
Q ss_pred cccCCCceEeeeeHHHHHHHHHhCCCCcEEEeCCchhhhHHhhhhhhcCccccccccccCCCCCceeeecCCCCcccccc
Q 019837 240 KFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYR 319 (335)
Q Consensus 240 ~~~~p~V~~~~~~VDa~~~~lv~~P~~FViv~~NlfGDILSDlaA~l~GslGlapSanig~~~~~~~fEp~HGSAPdiag 319 (335)
+|++.+|+++|+|||+||||||++|++|||||+|||||||||++|+++|||||+||+|||+++..+||||+|||||||++
T Consensus 254 ~~~~~~I~~e~~~VD~~amqlV~~P~~FVivt~NlfGDILSD~aA~l~GslGl~pSanig~~~~~~~fEpvHGSAPdi~~ 333 (427)
T 2qfy_A 254 KFEQLGIHYEHRLIDDMVAQMIKSKGGFIMALKNYDGDVQSDIVAQGFGSLGLMTSILVTPDGKTFESEAAHGTVTRHYR 333 (427)
T ss_dssp HHHHHTCCEEEEEHHHHHHHHHHSCEEEEEEECHHHHHHHHHHHHHHHTCTTSEEEEEECTTSCCEEEECCSCCCHHHHH
T ss_pred cccCCeEEEEEEEHHHHHHHHHhCCCceEEEECccchHHHHHHHHHhcCcccccceeEeCCCCceeEecCCCCCcccccc
Confidence 22222399999999999999999999999999999999999999999999999999999987523899999999999998
Q ss_pred cccCCCCCCCCccccC
Q 019837 320 VHQKDDQGSCTYYPWI 335 (335)
Q Consensus 320 k~~aGk~~~aNP~a~I 335 (335)
++||||+++|||+|||
T Consensus 334 ~diAGk~~~ANP~A~I 349 (427)
T 2qfy_A 334 KYQKGEETSTNSIASI 349 (427)
T ss_dssp HHHTTCCCCCCCHHHH
T ss_pred hhhcCCCCccCcHHHH
Confidence 8899999559999986
No 10
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X*
Probab=100.00 E-value=6.5e-95 Score=706.90 Aligned_cols=285 Identities=15% Similarity=0.120 Sum_probs=248.3
Q ss_pred ccccEEEECCCCchHHHHHHHHHHHhc----CCCceEEEEEecch-hhhhccCCcccHHHHHHHHhcCeeeecCCCCCCc
Q 019837 8 VANPIVEMDGDEMTRVFWKSIKDKLIF----PFLELDIKYFDLGL-PNRDATDDKVTVESAEATLKYNVAIKCATITPDE 82 (335)
Q Consensus 8 m~~~I~vipGDGIGpEv~~~~~~~~~~----~~~~i~~~~~~~G~-~~~~~~G~~lp~~tl~~~~~~da~lkg~~~~p~~ 82 (335)
|.++|+||||||||||||+++++++.+ .+++|+|+++++|+ +++++||++||++|+++|+++|++||||+++|..
T Consensus 4 ~~~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~~g~~lp~~tl~~~~~~da~L~Gavg~P~~ 83 (364)
T 3flk_A 4 HSFRIAAIPGDGIGLEVLPEGIRVLEAAALKHGLALEFDTFEWASCDYYLQHGKMMPDDWAEQLKQYDAIYFGAVGWPDK 83 (364)
T ss_dssp -CEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTCCEEEEECCCSSHHHHHHHSSSSCTTHHHHHTTSSEEEEEECCBTTT
T ss_pred CceEEEEECCCcccHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCcHHHHhccCCcCCHHHHHHHHHCCEEEECCccCccc
Confidence 568999999999999999999976643 26999999999999 8999999999999999999999999999999952
Q ss_pred chhhHHHhhhcCCCcchhHhhhcCceEEeecccccCCCCCCCCC------CCCEEEEeeccCccccccceeeeCCCceee
Q 019837 83 ARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGW------TKPICIGRHAFGDQYRATDTVIQGPGKLKL 156 (335)
Q Consensus 83 ~~~~~~~l~~~~~s~~~~LRk~ldlyanvRPv~~~~~~~~~~~~------~~divivREnteg~Y~g~e~~~~~~g~~~~ 156 (335)
.. .. ..++|+|++|||+||||||+||+ +++|++.+++ ++||+||||||||+|+|.++... .+.
T Consensus 84 ~~-~~----~~~~s~~l~LR~~ldlyanvRP~--~~~pg~~splk~~~~~~vD~vivREnteG~Y~g~~~~~~-~~~--- 152 (364)
T 3flk_A 84 VP-DH----ISLWGSLLKFRREFDQYVNIRPV--RLFPGVPCALANRKVGDIDFVVVRENTEGEYSSLGGIMF-ENT--- 152 (364)
T ss_dssp BC-HH----HHHHTTHHHHHHHTTCCEEEEEE--ECCTTCCCSBTTCCTTSSEEEEEEECSSBTCCCCEEEES-TTS---
T ss_pred CC-CC----cCcccchHHHHHHhCCeEEEEEE--eccCCcccccccccCCCCCEEEEeeCCCceecCcCceec-cCC---
Confidence 11 01 01368899999999999999998 6666654433 47999999999999999876532 110
Q ss_pred eeecCCCCccchhhhccccCccceeeeeeeCHHHHHHHHHHHHHHHHhCCC-CEEEEeCCCcccccchhHHHHHHHHHHh
Q 019837 157 VFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKW-PLYLSTKNTILKKYDGRFKDIFQEVYEA 235 (335)
Q Consensus 157 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r~k-~Vt~v~KaNVl~~~~g~f~~~~~eva~~ 235 (335)
+ +..+..+++|||+++|||+|+||+||++|++ +||+|||+|||+.|+|+|+++|+||| +
T Consensus 153 ------~-------------~~~a~~~~~~T~~~~eRIar~AFe~A~~r~~kkVt~v~KaNvlk~s~glf~~~~~eva-~ 212 (364)
T 3flk_A 153 ------E-------------NEIVIQESIFTRRGVDRILKYAFDLAEKRERKHVTSATKSNGMAISMPYWDKRTEAMA-A 212 (364)
T ss_dssp ------T-------------TCEEEEEEEEEHHHHHHHHHHHHHHHHHSSSCEEEEEECTTTSTTHHHHHHHHHHHHH-T
T ss_pred ------C-------------CCEEEEEEEECHHHHHHHHHHHHHHHHhcCCCeEEEEECcchhhhHHHHHHHHHHHHH-H
Confidence 0 0124457899999999999999999999975 69999999999999999999999999 5
Q ss_pred hhhccccCCCceEeeeeHHHHHHHHHhCCCCc-EEEeCCchhhhHHhhhhhhcCccccccccccCCCCC-ceeeecCCCC
Q 019837 236 NWKSKFEAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGK-TIEAEAAHGT 313 (335)
Q Consensus 236 eY~~~~~~p~V~~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaA~l~GslGlapSanig~~~~-~~~fEp~HGS 313 (335)
+| |+|+++|+|||+||||||++|++| ||||+|||||||||++|+|+|||||+||+|+|+++. ++||||+|||
T Consensus 213 ey------pdv~~~~~~vD~~am~lv~~P~~FDVivt~NlfGDILSD~aa~l~GslGl~pSanig~~~~~~a~fEp~HGS 286 (364)
T 3flk_A 213 HY------PHVSWDKQHIDILCARFVLQPERFDVVVASNLFGDILSDLGPACAGTIGIAPSANLNPERNFPSLFEPVHGS 286 (364)
T ss_dssp TC------TTCEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHTTCSTTCEEEEECTTCSSCEEEEESSCC
T ss_pred HC------CCceEEeeEHHHHHHHHHhCcccCcEEEecccchHHHHHHHHHhcCCcccccccccCCCCCcceEEecCCCC
Confidence 99 999999999999999999999999 999999999999999999999999999999998752 3899999999
Q ss_pred cccccccccCCCCCCCCccccC
Q 019837 314 VTRHYRVHQKDDQGSCTYYPWI 335 (335)
Q Consensus 314 APdiagk~~aGk~~~aNP~a~I 335 (335)
||||| |||+ |||+|||
T Consensus 287 APdiA-----Gk~i-ANP~A~I 302 (364)
T 3flk_A 287 APDIF-----GKNI-ANPIAMI 302 (364)
T ss_dssp CTTTT-----TSSC-CCCHHHH
T ss_pred chhhc-----CCCc-cCcHHHH
Confidence 99997 6676 9999986
No 11
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative decarboxylase, amino-acid biosynthes lysine biosynthesis; 1.55A {Schizosaccharomyces pombe} SCOP: c.77.1.0 PDB: 3ty3_A
Probab=100.00 E-value=1.6e-94 Score=703.59 Aligned_cols=279 Identities=18% Similarity=0.182 Sum_probs=249.1
Q ss_pred cccEEEECCCCchHHHHHHHHHHHhcC----CCceEEEEEecchhhhhccCCcccHHHHHHHHh-cCeeeecCCCCCCcc
Q 019837 9 ANPIVEMDGDEMTRVFWKSIKDKLIFP----FLELDIKYFDLGLPNRDATDDKVTVESAEATLK-YNVAIKCATITPDEA 83 (335)
Q Consensus 9 ~~~I~vipGDGIGpEv~~~~~~~~~~~----~~~i~~~~~~~G~~~~~~~G~~lp~~tl~~~~~-~da~lkg~~~~p~~~ 83 (335)
.++|+||||||||||||+++++++.+. +++|+|+++++|++++++||++||++|+++|++ ||++||||+++|...
T Consensus 10 ~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~~da~L~Gavg~P~~~ 89 (366)
T 3ty4_A 10 RIVLGLIPADGIGKEVVPAARRLMENLPAKHKLKFDFIDLDAGWGTFERTGKALPERTVERLKTECNAALFGAVQSPTHK 89 (366)
T ss_dssp EEEEEEEEESTTHHHHHHHHHHHHHTCCGGGCCEEEEEECCCSHHHHHHHSCSSCHHHHHHHHHHCSEEEEEECCCCSSC
T ss_pred ceEEEEECCCccCHHHHHHHHHHHHHHHHhcCCceEEEEecchHHHHHhhCCCCCHHHHHHHHHhCCEEEECCccCCCCC
Confidence 479999999999999999999766543 689999999999999999999999999999999 699999999999643
Q ss_pred hhhHHHhhhcCCCcchhHhhhcCceEEeecccccCCCCCCCCCCCCEEEEeeccCccccccceeeeCCCceeeeeecCCC
Q 019837 84 RVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGK 163 (335)
Q Consensus 84 ~~~~~~l~~~~~s~~~~LRk~ldlyanvRPv~~~~~~~~~~~~~~divivREnteg~Y~g~e~~~~~~g~~~~~~~~~~g 163 (335)
. .+|+|+|++|||+||||||+||+ +++|++.. .+.|||||||||||+|+|.++.... + ..
T Consensus 90 ~-------~~~~s~~l~LRk~ldlyaNvRP~--~~~~g~~~-~~vD~vivREnTeG~Y~g~e~~~~~-~--------~~- 149 (366)
T 3ty4_A 90 V-------AGYSSPIVALRKKMGLYANVRPV--KSLDGAKG-KPVDLVIVRENTECLYVKEERMVQN-T--------PG- 149 (366)
T ss_dssp C-------TTCCCHHHHHHHHTTCCEEEEEE--ECCTTCSS-SCCEEEEEEECSCBGGGCCEEEEEC-C--------TT-
T ss_pred C-------cccccchHHHHHHhCCeEEEEEE--eccCCCCC-CCCcEEEEeeCCCCEeecCcceecc-C--------CC-
Confidence 2 15789999999999999999997 78888732 1589999999999999998876421 0 00
Q ss_pred CccchhhhccccCccceeeeeeeCHHHHHHHHHHHHHHHHhC-------------CCCEEEEeCCCcccccchhHHHHHH
Q 019837 164 DEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQK-------------KWPLYLSTKNTILKKYDGRFKDIFQ 230 (335)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r-------------~k~Vt~v~KaNVl~~~~g~f~~~~~ 230 (335)
+..+..+++|||+++|||+|+||+||++| +++||+|||+|||+.|+|+||++|+
T Consensus 150 -------------~~~a~~~~~~Tr~~~eRIar~AFe~A~~r~~~~~~~~~~~~~rkkVt~v~KaNVl~~s~glf~~~~~ 216 (366)
T 3ty4_A 150 -------------KRVAEAIRRISEEASTKIGKMAFEIAKSRQKIRESGTYSIHKKPLVTIIHKSNVMSVTDGLFRESCR 216 (366)
T ss_dssp -------------CCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCSSCEEEEEECTTTCTTHHHHHHHHHH
T ss_pred -------------CceEEEEEEecHHHHHHHHHHHHHHHHhcCccccccccccCCCCeEEEEECCcchHhHHHHHHHHHH
Confidence 01244578999999999999999999998 6789999999999999999999999
Q ss_pred HH---HHhhhhccccCCCceEeeeeHHHHHHHHHhCCCCc-EEEeCCchhhhHHhhhhhhcCccccccccccCCCCCcee
Q 019837 231 EV---YEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIE 306 (335)
Q Consensus 231 ev---a~~eY~~~~~~p~V~~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaA~l~GslGlapSanig~~~~~~~ 306 (335)
|| + ++| |+|+++|+|||+||||||++|++| ||||+|||||||||++|+|+|||||+||+|+|++ ++|
T Consensus 217 ev~~~a-~ey------pdV~~~~~~VD~~am~lv~~P~~FDViVt~NlfGDILSD~aa~l~GslGl~pSanig~~--~a~ 287 (366)
T 3ty4_A 217 HAQSLD-PSY------ASINVDEQIVDSMVYRLFREPECFDVVVAPNLYGDILSDGAASLIGSLGLVPSANVGDN--FVM 287 (366)
T ss_dssp HHGGGC-GGG------TTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHGGGSCGGGCCCEEECSS--CEE
T ss_pred HHHHhH-hhC------CCceEEeeeHHHHHHHHHhCcccCcEEEECccchHHHHHHHHHhcCchhhhcceeeCCC--ceE
Confidence 99 6 699 999999999999999999999999 9999999999999999999999999999999954 599
Q ss_pred eecCCCCcccccccccCCCCCCCCccccC
Q 019837 307 AEAAHGTVTRHYRVHQKDDQGSCTYYPWI 335 (335)
Q Consensus 307 fEp~HGSAPdiagk~~aGk~~~aNP~a~I 335 (335)
|||+|||||||| ||++ |||+|||
T Consensus 288 fEpvHGSAPdIa-----Gk~i-ANP~A~I 310 (366)
T 3ty4_A 288 SEPVHGSAPDIA-----GRGI-ANPVATF 310 (366)
T ss_dssp ECCSSCCCTTTT-----TSSC-CCCHHHH
T ss_pred EecCCCChhhcC-----CCCc-cCcHHHH
Confidence 999999999997 6666 9999986
No 12
>3udu_A 3-isopropylmalate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.85A {Campylobacter jejuni} SCOP: c.77.1.1 PDB: 3udo_A
Probab=100.00 E-value=4.5e-95 Score=706.33 Aligned_cols=279 Identities=19% Similarity=0.144 Sum_probs=243.8
Q ss_pred ccEEEECCCCchHHHHHHHHHHHhcC----CCceEEEEEecchhhhhccCCcccHHHHHHHHhcCeeeecCCCCCCcchh
Q 019837 10 NPIVEMDGDEMTRVFWKSIKDKLIFP----FLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARV 85 (335)
Q Consensus 10 ~~I~vipGDGIGpEv~~~~~~~~~~~----~~~i~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~lkg~~~~p~~~~~ 85 (335)
++|+||||||||||||+++++++.+. +++|+|+++++|++++++||++||++|+++|+++|++||||+++|.....
T Consensus 7 ~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~L~Gavg~P~~~~~ 86 (361)
T 3udu_A 7 YKVAVLAGDGIGPLVMKEALKILTFIAQKYNFSFELNEAKIGGASIDAYGVALSDETLKLCEQSDAILFGSVGGPKWDNL 86 (361)
T ss_dssp EEEEEEEESTTHHHHHHHHHHHHHHHHHHHTCEEEEEECCCTHHHHHHHSSSSCHHHHHHHHTSSEEEEEECCCGGGTTS
T ss_pred eeEEEECCCccCHHHHHHHHHHHHHHHHhcCCCEEEEEEeccHHHHHhhCCcCCHHHHHHHHHCCcEEECCcCCCCcCCC
Confidence 79999999999999999999766432 69999999999999999999999999999999999999999999842110
Q ss_pred hHHHhhhcCCCcchhHhhhcCceEEeecccccCCCCCC--C-------CCCCCEEEEeeccCccccccceeeeCCCceee
Q 019837 86 KEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLI--P-------GWTKPICIGRHAFGDQYRATDTVIQGPGKLKL 156 (335)
Q Consensus 86 ~~~~l~~~~~s~~~~LRk~ldlyanvRPv~~~~~~~~~--~-------~~~~divivREnteg~Y~g~e~~~~~~g~~~~ 156 (335)
+. . ...|.++|++|||+||||||+||+ +++|++. + ..++|||||||||||+|+|.++.. .
T Consensus 87 ~~-~-~~~~~~~~l~LRk~ldLyaNvRP~--~~~pg~~~~splk~~~~~~~vD~vivREnTeG~Y~g~~~~~--~----- 155 (361)
T 3udu_A 87 PI-D-QRPERASLLPLRKHFNLFANLRPC--KIYESLTHASPLKNEIIQKGVDILCVRELTGGIYFGKQDLG--K----- 155 (361)
T ss_dssp CG-G-GSHHHHHHHHHHHHHTCCEEEEEE--ECCGGGGGGSSBCHHHHTTCCEEEEEEECSSGGGTSCEEEC--S-----
T ss_pred CC-C-cCccccchHHHHHHcCCEEEEEEe--eccCCccccCCCccccccCCCcEEEEcccCCCeecCccCCc--C-----
Confidence 00 0 001223478999999999999998 5666552 1 225799999999999999976432 0
Q ss_pred eeecCCCCccchhhhccccCccceeeeeeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchhHHHHHHHHHHhh
Q 019837 157 VFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEAN 236 (335)
Q Consensus 157 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r~k~Vt~v~KaNVl~~~~g~f~~~~~eva~~e 236 (335)
+.+.++++|||+++|||+|+||+||++|+|+||+|||+|||+ ++|+|+++|+||| ++
T Consensus 156 ---------------------~~a~~~~~~Tr~~~eRIar~AFe~A~~rrkkVT~v~KaNvl~-t~glf~~~~~eva-~e 212 (361)
T 3udu_A 156 ---------------------ESAYDTEIYTKKEIERIARIAFESARIRKKKVHLIDKANVLA-SSILWREVVANVA-KD 212 (361)
T ss_dssp ---------------------SEEEEEEEEEHHHHHHHHHHHHHHHHHTTSEEEEEECTTTCH-HHHHHHHHHHHHG-GG
T ss_pred ---------------------ceEEEEEeccHHHHHHHHHHHHHHHHHcCCcEEEEECchhhc-cchHHHHHHHHHH-HH
Confidence 124557899999999999999999999999999999999997 8999999999999 59
Q ss_pred hhccccCCCceEeeeeHHHHHHHHHhCCCCc-EEEeCCchhhhHHhhhhhhcCccccccccccCCCCCceeeecCCCCcc
Q 019837 237 WKSKFEAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVT 315 (335)
Q Consensus 237 Y~~~~~~p~V~~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaA~l~GslGlapSanig~~~~~~~fEp~HGSAP 315 (335)
| |+|+++|+|||+||||||++|++| ||||+|||||||||++|+|+|||||+||+|||+++ ++||||+|||||
T Consensus 213 y------pdV~~~~~~VD~~am~lv~~P~~FDViVt~NlfGDILSD~aa~l~GslGl~pSanig~~~-~a~fEpvHGSAP 285 (361)
T 3udu_A 213 Y------QDINLEYMYVDNAAMQIVKNPSIFDVMLCSNLFGDILSDELAAINGSLGLLSSASLNDKG-FGLYEPAGGSAP 285 (361)
T ss_dssp C------TTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHCCGGGCEEEEECTTS-CEEEEESSCCCG
T ss_pred C------CCCeEEeeeHHHHHHHHHhCcccCcEEEecchhHHHHHHHHHHhcCchhhcceeeeCCCC-CeeeecCCCChh
Confidence 9 999999999999999999999999 99999999999999999999999999999999876 699999999999
Q ss_pred cccccccCCCCCCCCccccC
Q 019837 316 RHYRVHQKDDQGSCTYYPWI 335 (335)
Q Consensus 316 diagk~~aGk~~~aNP~a~I 335 (335)
||| |||+ |||+|||
T Consensus 286 dIA-----Gk~i-ANP~A~I 299 (361)
T 3udu_A 286 DIA-----HLNI-ANPIAQI 299 (361)
T ss_dssp GGT-----TSSC-CCCHHHH
T ss_pred hhc-----CCCc-cCCHHHH
Confidence 997 5666 9999986
No 13
>3vmk_A 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase; HET: IPM; 1.48A {Shewanella benthica} PDB: 3vml_A* 3vmj_A* 3vl2_A* 3vkz_A* 3vl4_A* 3vl6_A* 3vl7_A* 3vl3_A*
Probab=100.00 E-value=5.2e-94 Score=701.88 Aligned_cols=287 Identities=19% Similarity=0.186 Sum_probs=247.5
Q ss_pred cccccEEEECCCCchHHHHHHHHHHHhcC----CCceEEEEEecchhhhhccCCcccHHHHHHHHhcCeeeecCCCCCCc
Q 019837 7 KVANPIVEMDGDEMTRVFWKSIKDKLIFP----FLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDE 82 (335)
Q Consensus 7 ~m~~~I~vipGDGIGpEv~~~~~~~~~~~----~~~i~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~lkg~~~~p~~ 82 (335)
-.+|+|++|||||||||||+++++++.+. +++|+|+++++|++++++||++||++|+++|+++|++||||+++|..
T Consensus 11 ~~~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~g~~~~~~~~~~G~~~~~~~G~~lp~etl~~~~~~da~L~Gavg~P~~ 90 (375)
T 3vmk_A 11 GSSYQIAVLAGDGIGPEVMAEARKVLAAVEKRFDLSIEYSEYDVGGAAIDNHGCPLPEATLKGCEAADAVLFGSVGGPKW 90 (375)
T ss_dssp TSCEEEEEEEESTTHHHHHHHHHHHHHHHHHHTTCCEEEEECCCTHHHHHHHSSSSCHHHHHHHHTSSEEEEEECCCGGG
T ss_pred CCcceEEEECCCcccHHHHHHHHHHHHHHHHhcCCCEEEEEEECCHHHHHhhCCcCCHHHHHHHHHCCeEEECCcCCCCc
Confidence 34689999999999999999999766432 69999999999999999999999999999999999999999999853
Q ss_pred chhhHHHhhhcCCCcchhHhhhcCceEEeecccccCCCCCC---C------CCCCCEEEEeeccCccccccceeeeCCCc
Q 019837 83 ARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLI---P------GWTKPICIGRHAFGDQYRATDTVIQGPGK 153 (335)
Q Consensus 83 ~~~~~~~l~~~~~s~~~~LRk~ldlyanvRPv~~~~~~~~~---~------~~~~divivREnteg~Y~g~e~~~~~~g~ 153 (335)
...+. ....|.++|++|||+||||||+||+ +++|++. + ..++|||||||||||+|+|.++.....
T Consensus 91 ~~~~~--~~~~~~~~~l~LRk~ldLyaNvRP~--~~~pg~~~~splk~~~~~~~vD~vIvREnTeG~Y~g~~~~~~~~-- 164 (375)
T 3vmk_A 91 EHLPP--NDQPERGALLPLRGHFELFCNMRPA--KLHPGLEHMSPLRSDISEKGFDILCVRELTGGIYFGKPKGRQGE-- 164 (375)
T ss_dssp TTSCS--TTSHHHHHHHHHHHHTTCCEEEEEE--ECCTTCGGGSSBCHHHHTTCCEEEEEEECSSBTTTCSSCEEECC--
T ss_pred cCCCc--cccccccchHHHHHHcCCeEEEEEE--eccCCCcccCCCCcccccCCCCEEEEeeCCCCEecCCccccccC--
Confidence 11100 0112345589999999999999998 5666653 1 246899999999999999986543210
Q ss_pred eeeeeecCCCCccchhhhccccCccceeeeeeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchhHHHHHHHHH
Q 019837 154 LKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVY 233 (335)
Q Consensus 154 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r~k~Vt~v~KaNVl~~~~g~f~~~~~eva 233 (335)
.+ +..+.++++|||+++|||+|+||+||++|+|+||+|||+|||+ ++++|+++|+|||
T Consensus 165 --------~~-------------~~~a~~~~~~Tr~~~eRIar~AFe~A~~rrkkVT~v~KaNvl~-~~glf~~~~~eva 222 (375)
T 3vmk_A 165 --------GE-------------NEEAFDTMRYSRKEIRRIAKIAFESAQGRRKKVTSVDKANVLA-CSVLWREVVEEVA 222 (375)
T ss_dssp --------GG-------------GCEEEEEEEEEHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCH-HHHHHHHHHHHHH
T ss_pred --------CC-------------CceEEEEEEEcHHHHHHHHHHHHHHHHHcCCcEEEEECchhhh-hhhHHHHHHHHHH
Confidence 00 0124457899999999999999999999999999999999998 6799999999999
Q ss_pred HhhhhccccCCCceEeeeeHHHHHHHHHhCCCCc-EEEeCCchhhhHHhhhhhhcCccccccccccCCCCCceeeecCCC
Q 019837 234 EANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHG 312 (335)
Q Consensus 234 ~~eY~~~~~~p~V~~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaA~l~GslGlapSanig~~~~~~~fEp~HG 312 (335)
++| |+|+++|+|||+||||||++|++| ||||+|||||||||++|+|+|||||+||+|||+++ ++||||+||
T Consensus 223 -~ey------pdV~~~~~~VD~~am~lv~~P~~FDViVt~NlfGDILSD~aa~l~GslGl~pSanig~~~-~a~fEpvHG 294 (375)
T 3vmk_A 223 -KDY------PDVELEHIYIDNATMQLLRRPNEFDVMLCSNLFGDIVSDEIAMLTGSMGLLASISMNSQG-FGMYEPAGG 294 (375)
T ss_dssp -TTC------TTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHTCGGGCEEEEECTTS-CEEEEESSC
T ss_pred -HHC------CCceEeeeeHHHHHHHHHhCcccCcEEEECchhHHHHHHHHHHhcCCccccceeeeCCCC-ceEEecCCC
Confidence 599 999999999999999999999999 99999999999999999999999999999999875 599999999
Q ss_pred CcccccccccCCCCCCCCccccC
Q 019837 313 TVTRHYRVHQKDDQGSCTYYPWI 335 (335)
Q Consensus 313 SAPdiagk~~aGk~~~aNP~a~I 335 (335)
|||||| |||+ |||+|||
T Consensus 295 SAPdIA-----Gk~i-ANP~A~I 311 (375)
T 3vmk_A 295 SAPDIA-----GQGI-ANPVAQI 311 (375)
T ss_dssp CCTTTT-----TSSC-SCCHHHH
T ss_pred Cchhcc-----CCCc-cCcHHHH
Confidence 999997 6666 9999986
No 14
>2y3z_A 3-isopropylmalate dehydrogenase; oxidoreductase, LEUB, leucine biosynthesis; HET: 2PE; 1.83A {Thermus thermophilus} PDB: 2y40_A 2y41_A* 2y42_A* 1xaa_A 1osi_A 1hex_A 1xab_A 2ztw_A* 1g2u_A 1gc9_A 1osj_A 1ipd_A 1gc8_A 1wal_A 1dpz_A 1dr0_A 1dr8_A 1idm_A 1xac_A 1xad_A
Probab=100.00 E-value=3.1e-94 Score=700.53 Aligned_cols=278 Identities=17% Similarity=0.132 Sum_probs=245.3
Q ss_pred ccEEEECCCCchHHHHHHHHHHHhcC----CCceEEEEEecchhhhhccCCcccHHHHHHHHhcCeeeecCCCCCCcchh
Q 019837 10 NPIVEMDGDEMTRVFWKSIKDKLIFP----FLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARV 85 (335)
Q Consensus 10 ~~I~vipGDGIGpEv~~~~~~~~~~~----~~~i~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~lkg~~~~p~~~~~ 85 (335)
++|+||||||||||||+++++++.+. +++|+|+++++|++++++||+++|++|+++|+++|++||||+++|...+.
T Consensus 4 ~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~g~~lp~~tl~~~~~~da~l~Gavg~P~~~~~ 83 (359)
T 2y3z_A 4 MKVAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVEEAEAVLLGSVGGPKWDGL 83 (359)
T ss_dssp EEEEEECCSTTHHHHHHHHHHHHHHHHHHHTCCEEEEECCCTHHHHHHHSSSSCHHHHHHHHHSSEEEECCCCCGGGTTS
T ss_pred cEEEEECCCCcCHHHHHHHHHHHHHHHHhcCCCeEEEEEeccHHHHHhhCCcCCHHHHHHHHHCCEEEEccccCCccccC
Confidence 79999999999999999999766543 68999999999999999999999999999999999999999999953221
Q ss_pred hHHHhhhcCCCcchhHhhhcCceEEeecccccCCCCCC--CCC------CCCEEEEeeccCccccccceeeeCCCceeee
Q 019837 86 KEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLI--PGW------TKPICIGRHAFGDQYRATDTVIQGPGKLKLV 157 (335)
Q Consensus 86 ~~~~l~~~~~s~~~~LRk~ldlyanvRPv~~~~~~~~~--~~~------~~divivREnteg~Y~g~e~~~~~~g~~~~~ 157 (335)
++ .+ ..|++ |++|||+||||||+||+ +++|++. +++ +.||+||||||||+|+|.++... .
T Consensus 84 ~~-~~-~~~~~-~l~LR~~ldlyanvRP~--~~~pgl~~~splk~~~~~~iD~vivREnteg~Y~g~e~~~~-~------ 151 (359)
T 2y3z_A 84 PR-KI-RPETG-LLSLRKSQDLFANLRPA--KVFPGLERLSPLKEEIARGVDVLIVRELTGGIYFGEPRGMS-E------ 151 (359)
T ss_dssp CG-GG-CHHHH-HHHHHHHTTEEEEEEEE--ECCTTCGGGSSSCHHHHTTCEEEEEEECSCSTTTCSSCEEC-S------
T ss_pred Cc-cc-ccchh-HHHHHHHhCCEEEEEEe--eccCCCCCCCCcccccCCCceEEEEecCccceEecCCCcCC-C------
Confidence 11 11 12445 89999999999999998 6777763 222 47999999999999999865320 0
Q ss_pred eecCCCCccchhhhccccCccceeeeeeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchhHHHHHHHHHHhhh
Q 019837 158 FVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANW 237 (335)
Q Consensus 158 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r~k~Vt~v~KaNVl~~~~g~f~~~~~eva~~eY 237 (335)
..+..+++||++++|||+|+||+||++|+++||+|||+|||+ ++++|+++|+||| ++|
T Consensus 152 --------------------~~a~~~~~~T~~~~eRIar~AFe~A~~rrkkVt~v~KaNvlk-~~~lf~~~~~eva-~ey 209 (359)
T 2y3z_A 152 --------------------AEAWNTERYSKPEVERVARVAFEAARKRRKHVVSVDKANVLE-VGEFWRKTVEEVG-RGY 209 (359)
T ss_dssp --------------------SCEECCCCCCHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCH-HHHHHHHHHHHHH-TTC
T ss_pred --------------------ceEEEEEEEcHHHHHHHHHHHHHHHHHcCCeEEEEECCcccc-ccHHHHHHHHHHH-HHC
Confidence 124457899999999999999999999988999999999999 8999999999999 699
Q ss_pred hccccCCCceEeeeeHHHHHHHHHhCCCCc-EEEeCCchhhhHHhhhhhhcCccccccccccCCCCCceeeecCCCCccc
Q 019837 238 KSKFEAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTR 316 (335)
Q Consensus 238 ~~~~~~p~V~~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaA~l~GslGlapSanig~~~~~~~fEp~HGSAPd 316 (335)
|+|+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+||+|||+++ +||||+||||||
T Consensus 210 ------pdI~~~~~~VD~~~mqlv~~P~~FDVivt~NlfGDILSD~aa~l~GslGl~pSanig~~~--~~fEpvHGSAPd 281 (359)
T 2y3z_A 210 ------PDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSLGLLPSASLGRGT--PVFEPVHGSAPD 281 (359)
T ss_dssp ------TTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHTTTSCGGGCEEEEEESSC--CEEEESSCCCGG
T ss_pred ------CcEEEEeeEHHHHHHHHhhCcccccEEEEcCcchHHHHHHHHHhcCcccccceeEeCCCC--ceeecCCCChhh
Confidence 999999999999999999999999 99999999999999999999999999999999876 599999999999
Q ss_pred ccccccCCCCCCCCccccC
Q 019837 317 HYRVHQKDDQGSCTYYPWI 335 (335)
Q Consensus 317 iagk~~aGk~~~aNP~a~I 335 (335)
|| |||+ |||+|+|
T Consensus 282 iA-----Gk~i-ANP~A~I 294 (359)
T 2y3z_A 282 IA-----GKGI-ANPTAAI 294 (359)
T ss_dssp GT-----TSSC-SCTHHHH
T ss_pred hC-----CCCC-cCCHHHH
Confidence 96 6675 9999986
No 15
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus}
Probab=100.00 E-value=2e-93 Score=714.54 Aligned_cols=282 Identities=19% Similarity=0.196 Sum_probs=257.7
Q ss_pred CCCcccccc----ccEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecchhhhhccC-CcccHHHHHHHHhcCeeeec
Q 019837 1 MAFQKIKVA----NPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATD-DKVTVESAEATLKYNVAIKC 75 (335)
Q Consensus 1 ~~~~~~~m~----~~I~vipGDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~G-~~lp~~tl~~~~~~da~lkg 75 (335)
|.++||+|. ++|++|||||||||||+++++++.+.+++|+|+++++|+++|++|| +++|++++++|+++|++|||
T Consensus 7 ~~~~~i~~~~~g~~~IavipGDGIGpEV~~~a~~VL~a~~~~ie~~~~~~G~~~~~~~G~~~lp~etle~ik~~daiLkG 86 (496)
T 2d1c_A 7 ETGKKMHVLEDGRKLITVIPGDGIGPECVEATLKVLEAAKAPLAYEVREAGASVFRRGIASGVPQETIESIRKTRVVLKG 86 (496)
T ss_dssp TTSCEEEECTTSCEEEEEECCSTTHHHHHHHHHHHHHHTTCCEEEEECCCSHHHHTTTCTTSCCHHHHHHHHHHCEEEEC
T ss_pred CCCceeEeccCCCEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEecCHHHHhccCCCcCcHHHHHHHHHCCEEEEC
Confidence 346888887 7999999999999999999988877799999999999999999999 99999999999999999999
Q ss_pred CCCCCCcchhhHHHhhhcCCCcchhHhhhcCceEEeecccccCCCCCCCCC---CCCEEEEeeccCccccccceeeeCCC
Q 019837 76 ATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGW---TKPICIGRHAFGDQYRATDTVIQGPG 152 (335)
Q Consensus 76 ~~~~p~~~~~~~~~l~~~~~s~~~~LRk~ldlyanvRPv~~~~~~~~~~~~---~~divivREnteg~Y~g~e~~~~~~g 152 (335)
|+++|.. .+|+|+|++|||+||||||+||+ +++|++.+++ ..||+||||||||+|+|.++... +
T Consensus 87 avgtP~~---------~~~~s~~l~LRk~LdLyaNlRP~--k~~pgl~splk~~~vD~vIVREnTEG~Y~G~e~~~~-~- 153 (496)
T 2d1c_A 87 PLETPVG---------YGEKSANVTLRKLFETYANVRPV--REFPNVPTPYAGRGIDLVVVRENVEDLYAGIEHMQT-P- 153 (496)
T ss_dssp CCCCCSS---------SSSCCHHHHHHHHTTCCEEEEEE--ECBTTBCCTTTTSCCEEEEEEECSSBGGGCCEEEEE-T-
T ss_pred CccCCCc---------ccccChHHHHHHHhCCEEEEEEE--eecCCCCccccCCCccEEEEeeCcCceEeceeEecC-C-
Confidence 9999963 25899999999999999999997 6777765544 57999999999999999876531 1
Q ss_pred ceeeeeecCCCCccchhhhccccCccceeeeeeeCHHHHHHHHHHHHHHHHhC-CCCEEEEeCCCcccccchhHHHHHHH
Q 019837 153 KLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQK-KWPLYLSTKNTILKKYDGRFKDIFQE 231 (335)
Q Consensus 153 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r-~k~Vt~v~KaNVl~~~~g~f~~~~~e 231 (335)
..+..+++||++++|||+|+||+||++| +++||++||+|||+.|+|+|+++|+|
T Consensus 154 -------------------------~va~~~~v~Tr~~ieRIar~AFe~A~~r~rkkVT~V~KaNVlk~sdGlfr~v~~e 208 (496)
T 2d1c_A 154 -------------------------SVAQTLKLISWKGSEKIVRFAFELARAEGRKKVHCATKSNIMKLAEGTLKRAFEQ 208 (496)
T ss_dssp -------------------------TEEEEEEEEEHHHHHHHHHHHHHHHHHTTCCEEEEEECTTTCTTHHHHHHHHHHH
T ss_pred -------------------------CeEEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECCCchhhHHHHHHHHHHH
Confidence 1234468999999999999999999999 57899999999999999999999999
Q ss_pred HHHhhhhccccCCCceEeeeeHHHHHHHHHhCCCCc-EEEeCCchhhhHHhhhhhhcCccccccccccCCCCCceeeecC
Q 019837 232 VYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAA 310 (335)
Q Consensus 232 va~~eY~~~~~~p~V~~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaA~l~GslGlapSanig~~~~~~~fEp~ 310 (335)
|| ++| |+|+++|+|||+|+||||++|++| ||||+|||||||||++|+++|||||+||+|||+++ +||||+
T Consensus 209 Va-~eY------PdI~~e~~~VD~~amqLV~~P~~FDVIVt~NLfGDILSDlaA~l~GslGlapSanig~~~--a~FEpv 279 (496)
T 2d1c_A 209 VA-QEY------PDIEAVHIIVDNAAHQLVKRPEQFEVIVTTNMNGDILSDLTSGLIGGLGFAPSANIGNEV--AIFEAV 279 (496)
T ss_dssp HH-TTC------TTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHTTTTCGGGCEEEEECSSC--EEEEES
T ss_pred HH-HHC------CCceEEEEeHHHHHHHHhhCcCcceEEEECCcchHHHHHHHHHhcCCcccCcEEEECCCC--ceeeCC
Confidence 98 599 999999999999999999999999 99999999999999999999999999999999874 899999
Q ss_pred CCCcccccccccCCCCCCCCccccC
Q 019837 311 HGTVTRHYRVHQKDDQGSCTYYPWI 335 (335)
Q Consensus 311 HGSAPdiagk~~aGk~~~aNP~a~I 335 (335)
|||||||| ||++ |||+|+|
T Consensus 280 HGSAPDIA-----Gk~i-ANP~A~I 298 (496)
T 2d1c_A 280 HGSAPKYA-----GKNV-INPTAVL 298 (496)
T ss_dssp SCCCTTTT-----TSSC-CCCHHHH
T ss_pred CCchhhhc-----CCCc-cCcHHHH
Confidence 99999997 6666 9999986
No 16
>3dms_A Isocitrate dehydrogenase [NADP]; struc genomics, seattle structural genomics center for infectious ssgcid, glyoxylate bypass, manganese; 1.65A {Burkholderia pseudomallei} SCOP: c.77.1.1 PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A 1sjs_A 3icd_A 3lcb_C* 4aj3_A* 4aja_A* 4icd_A* 5icd_A* 9icd_A* 1bl5_A* 1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A ...
Probab=100.00 E-value=1.6e-93 Score=709.59 Aligned_cols=303 Identities=18% Similarity=0.135 Sum_probs=248.5
Q ss_pred ccccEEEECCCCchHHHHHHHHHHHhcC-------CCceEEEEEecchhhhhccCC--cccHHHHHHHHhcCeeeecCCC
Q 019837 8 VANPIVEMDGDEMTRVFWKSIKDKLIFP-------FLELDIKYFDLGLPNRDATDD--KVTVESAEATLKYNVAIKCATI 78 (335)
Q Consensus 8 m~~~I~vipGDGIGpEv~~~~~~~~~~~-------~~~i~~~~~~~G~~~~~~~G~--~lp~~tl~~~~~~da~lkg~~~ 78 (335)
+.++|+||||||||||||+++++++.+. +++|+|+++++|++++++||+ +||++|+++|+++|++||||++
T Consensus 35 ~~~~I~vipGDGIGpEV~~~a~~Vl~aa~~~~~~~~~~i~~~~~~~G~~a~~~~G~~~~lp~etl~~~k~~da~l~G~~~ 114 (427)
T 3dms_A 35 DQPIIPYIEGDGTGFDITPVMIKVVDAAVEKAYGGKKKIHWMEIYAGEKATKVYGPDVWLPEETLQVLKEYVVSIKGPLT 114 (427)
T ss_dssp SSBEEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEEECCTHHHHHHHCTTCSSCHHHHHHHHHTCEEEECCCC
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeCCHHHHHhcCCCCCCCHHHHHHHHhcCEEEECCCC
Confidence 3478999999999999999999766432 279999999999999999999 9999999999999999999999
Q ss_pred CCCcchhhHHHhhhcCCCcchhHhhhcCceEEeecccccCCCCCCCCC----CCCEEEEeeccCccccccceeeeCCCce
Q 019837 79 TPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGW----TKPICIGRHAFGDQYRATDTVIQGPGKL 154 (335)
Q Consensus 79 ~p~~~~~~~~~l~~~~~s~~~~LRk~ldlyanvRPv~~~~~~~~~~~~----~~divivREnteg~Y~g~e~~~~~~g~~ 154 (335)
+|.+ .+|+|+|++|||+||||||+||+ +++|++.+++ ++|||||||||||+|+|+||+...+...
T Consensus 115 tP~~---------~~~~s~~l~LRk~LdLyaNlRPv--~~~pg~~splk~~~~vDivIvREnTeG~Y~G~e~~~~~~~~~ 183 (427)
T 3dms_A 115 TPVG---------GGIRSLNVALRQELDLYVCLRPI--QYFKGVPSPVREPEKTNMVIFRENSEDIYAGIEWAAESEQAK 183 (427)
T ss_dssp CCC-------------CCHHHHHHHHTTCCEEEEEE--CCCTTCCCSSSCGGGCCEEEEEECSSGGGGCCEECTTCHHHH
T ss_pred CCCC---------cccCChhHHHHHHhCCeEEEEEe--ecCCCCCCCCCCCCCceEEEEEECCCCEecCcccccCCcccc
Confidence 9964 25789999999999999999998 6666665443 5799999999999999998763210000
Q ss_pred ee-eee-cCCCCccchhhhccccCccceeeeeeeCHHHHHHHHHHHHHHHHhCC-CCEEEEeCCCcccccchhHHHHHHH
Q 019837 155 KL-VFV-PEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKK-WPLYLSTKNTILKKYDGRFKDIFQE 231 (335)
Q Consensus 155 ~~-~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r~-k~Vt~v~KaNVl~~~~g~f~~~~~e 231 (335)
+. .|. .+.|.. ...+++ +.+..+++|||+++|||+|+||+||++|+ |+||+|||+|||+.|+|+||++|+|
T Consensus 184 ~~~~~~~~~~g~~-----~~~~~~-~~a~~~~~~Tr~~~eRIar~AFe~A~~r~rkkVT~V~KaNVlk~tdglfr~~~~e 257 (427)
T 3dms_A 184 KVIKFLQEEMGVK-----KIRFPQ-TSGIGIKPVSKEGTERLVRKAIQYAIDNDRKSVTLVHKGNIMKFTEGAFRDAGYA 257 (427)
T ss_dssp HHHHHHHHTSCCC-----CCSCGG-GCCEECCCCCHHHHHHHHHHHHHHHHHTTCSEEEEEECTTTSTTTHHHHHHHHHH
T ss_pred ccccccccccccc-----ccccCC-cceEEEEEecHHHHHHHHHHHHHHHHhcCCCeEEEEECCccchhhhHHHHHHHHH
Confidence 00 000 000000 001111 23444689999999999999999999985 6899999999999999999999999
Q ss_pred HHHhhhhc-------------cccCCCceEeeeeHHHHHHHHHhCCCCc-EEEeCCchhhhHHhhhhhhcCccccccccc
Q 019837 232 VYEANWKS-------------KFEAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVL 297 (335)
Q Consensus 232 va~~eY~~-------------~~~~p~V~~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaA~l~GslGlapSan 297 (335)
||+++|.+ .+..|+|+++|+|||+||||||++|++| ||||+|||||||||++|+|+|||||+||+|
T Consensus 258 va~~eypdv~~~~~~~~~~~~~~~~~~V~~~~~~VD~~amqlv~~P~~FDViVt~NlfGDILSD~aA~l~GslGl~pSan 337 (427)
T 3dms_A 258 LAQKEFGAELIDGGPWMKFKNPKTGNEIVVKDSIADAFLQQILLRPAEYDVIATLNLNGDYISDALAAQVGGIGIAPGAN 337 (427)
T ss_dssp HHHHHHCCEESTTSSCEEEECTTTCCEEEEEEEEHHHHHHHHHHCGGGCCEEEECHHHHHHHHHHHHHHTTCTTTCEEEE
T ss_pred HHHHhCCccccccccccccccccccCceEEEEeeHHHHHHHHhhCcccceEEEEcccccHHHHHHHHHhcCCccccceee
Confidence 99557932 1223468999999999999999999999 999999999999999999999999999999
Q ss_pred cCCCCCceeeecCCCCcccccccccCCCCCCCCccccC
Q 019837 298 VCPDGKTIEAEAAHGTVTRHYRVHQKDDQGSCTYYPWI 335 (335)
Q Consensus 298 ig~~~~~~~fEp~HGSAPdiagk~~aGk~~~aNP~a~I 335 (335)
||++ .+||||+|||||||| |||+ |||+|||
T Consensus 338 ig~~--~a~fEpvHGSAPdIA-----Gk~i-ANP~A~I 367 (427)
T 3dms_A 338 LSDS--VAMFEATHGTAPKYA-----GKDY-VNPGSEI 367 (427)
T ss_dssp ECSS--CEEEEECSCCCGGGT-----TSSC-SCCHHHH
T ss_pred eCCC--cceEEeccCChhhhc-----CCCc-CCcHHHH
Confidence 9965 499999999999997 6666 9999986
No 17
>3r8w_A 3-isopropylmalate dehydrogenase 2, chloroplastic; dimer, isocitrate and isopropylmalate dehydrogenases family, biosynthesis; 2.25A {Arabidopsis thaliana}
Probab=100.00 E-value=5.8e-94 Score=706.37 Aligned_cols=287 Identities=16% Similarity=0.123 Sum_probs=246.5
Q ss_pred cccccEEEECCCCchHHHHHHHHHHHhcC----CCceEEEEEecchhhhhccCCcccHHHHHHHHhcCeeeecCCCCCCc
Q 019837 7 KVANPIVEMDGDEMTRVFWKSIKDKLIFP----FLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDE 82 (335)
Q Consensus 7 ~m~~~I~vipGDGIGpEv~~~~~~~~~~~----~~~i~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~lkg~~~~p~~ 82 (335)
+|.++|++|||||||||||+++++++.+. +++|+|+++++|++++++||++||++|+++|+++|++||||+++|..
T Consensus 40 ~~~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~k~~daiL~Gavg~P~~ 119 (405)
T 3r8w_A 40 KKRYTITLLPGDGIGPEVVSIAKNVLQQAGSLEGVEFNFREMPIGGAALDLVGVPLPEETISAAKESDAVLLGAIGGYKW 119 (405)
T ss_dssp -CEEEEEEEEESTTHHHHHHHHHHHHHHHHHHTTCEEEEEECCCHHHHHHHHSSSSCHHHHHHHHHSSEEEEEECCCGGG
T ss_pred CCCeEEEEECCCcccHHHHHHHHHHHHHHHHhcCCceEEEEEEcCHHHHHhhCCcCCHHHHHHHHHCCEEEEccccCCCc
Confidence 46789999999999999999999766432 68999999999999999999999999999999999999999999842
Q ss_pred chhhHHHhhhcCCCcchhHhhhcCceEEeecccccCCCCCC--CC------CCCCEEEEeeccCccccccceeeeCCCce
Q 019837 83 ARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLI--PG------WTKPICIGRHAFGDQYRATDTVIQGPGKL 154 (335)
Q Consensus 83 ~~~~~~~l~~~~~s~~~~LRk~ldlyanvRPv~~~~~~~~~--~~------~~~divivREnteg~Y~g~e~~~~~~g~~ 154 (335)
...+.. ..+.++|++|||+||||||+||+ +.+|++. ++ .++|||||||||||+|+|.++.....+
T Consensus 120 ~~~~~~---~~p~~~ll~LRk~ldLyaNlRP~--k~~~gl~~~splk~~~~~~vD~vIvREnTeG~Y~G~e~~~~~~~-- 192 (405)
T 3r8w_A 120 DNNEKH---LRPEKGLLQIRAALKVFANLRPA--TVLPQLVDASTLKREVAEGVDLMVVRELTGGIYFGEPRGIKTNE-- 192 (405)
T ss_dssp TTSCGG---GSHHHHHHHHHHHHTCCEEEEEE--ECCGGGGGGSSBCHHHHTTCEEEEEEECSCSTTTCSSCEEEECS--
T ss_pred cCCccc---cCcccchHHHHHHhCCeEEEEEe--eccCCccccCccccccCCCceEEEEeeCCCCeecCCccccccCC--
Confidence 111000 01224489999999999999998 6666652 21 257999999999999999886542110
Q ss_pred eeeeecCCCCccchhhhccccCccceeeeeeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchhHHHHHHHHHH
Q 019837 155 KLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYE 234 (335)
Q Consensus 155 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r~k~Vt~v~KaNVl~~~~g~f~~~~~eva~ 234 (335)
.+ ++.+.++++|||+++|||+|+||+||++|+++||+|||+|||+. +|+|+++|+||+
T Consensus 193 -------~~-------------~~~a~~~~~~Tr~~~eRIar~AFe~A~~rrkkVT~v~KaNVlk~-sglf~~~~~eva- 250 (405)
T 3r8w_A 193 -------NG-------------EEVGFNTEVYAAHEIDRIARVAFETARKRRGKLCSVDKANVLEA-SILWRKRVTALA- 250 (405)
T ss_dssp -------SS-------------CEEEEEEEEEEHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCHH-HHHHHHHHHHHG-
T ss_pred -------CC-------------ceEEEEEEEecHHHHHHHHHHHHHHHHHcCCeEEEEECchhhcc-ccHHHHHHHHHH-
Confidence 01 01245578999999999999999999999899999999999995 599999999998
Q ss_pred hhhhccccCCCceEeeeeHHHHHHHHHhCCCCc-EEEeCCchhhhHHhhhhhhcCccccccccccCCCCCceeeecCCCC
Q 019837 235 ANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGT 313 (335)
Q Consensus 235 ~eY~~~~~~p~V~~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaA~l~GslGlapSanig~~~~~~~fEp~HGS 313 (335)
++| |||+++|+|||+||||||++|++| ||||+|||||||||++|+|+|||||+||+|||+++ ++||||+|||
T Consensus 251 ~eY------PdV~~~~~~VD~~amqLV~~P~~FDViVt~NlfGDILSD~aA~l~GslGl~pSanig~~~-~a~fEpvHGS 323 (405)
T 3r8w_A 251 SEY------PDVELSHMYVDNAAMQLVRDPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLSDSG-PGLFEPIHGS 323 (405)
T ss_dssp GGS------TTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHSCGGGCEEEEECSSS-CCEEEESSCC
T ss_pred hHC------CCCeEEeeeHHHHHHHHHhChhhCcEEeecchhhHHHHHHHHHhcCcccccceeeecCCC-CeEEecCCCC
Confidence 699 999999999999999999999999 99999999999999999999999999999999876 6899999999
Q ss_pred cccccccccCCCCCCCCccccC
Q 019837 314 VTRHYRVHQKDDQGSCTYYPWI 335 (335)
Q Consensus 314 APdiagk~~aGk~~~aNP~a~I 335 (335)
||||| |||+ |||+|||
T Consensus 324 APDIA-----Gk~i-ANP~A~I 339 (405)
T 3r8w_A 324 APDIA-----GQDK-ANPLATI 339 (405)
T ss_dssp CGGGT-----TTTC-CCCHHHH
T ss_pred hhhhC-----CCCC-CCcHHHH
Confidence 99997 6666 9999986
No 18
>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase); oxidoreductase, leucine biosynthetic pathway, NAD-dependant enzyme; 1.76A {Salmonella typhimurium} SCOP: c.77.1.1 PDB: 1cm7_A
Probab=100.00 E-value=1e-93 Score=698.64 Aligned_cols=285 Identities=16% Similarity=0.109 Sum_probs=247.2
Q ss_pred cccEEEECCCCchHHHHHHHHHHHhcC----CCceEEEEEecchhhhhccCCcccHHHHHHHHhcCeeeecCCCCCCcch
Q 019837 9 ANPIVEMDGDEMTRVFWKSIKDKLIFP----FLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEAR 84 (335)
Q Consensus 9 ~~~I~vipGDGIGpEv~~~~~~~~~~~----~~~i~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~lkg~~~~p~~~~ 84 (335)
.++|+||||||||||||+++++++.+. +++|+|+++++|++++++||+++|++|+++|+++|++||||+++|....
T Consensus 4 ~~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~g~~lp~~tl~~~~~~da~L~Gavg~p~~~~ 83 (363)
T 1cnz_A 4 NYHIAVLPGDGIGPEVMAQALKVMDAVRSRFDMRITTSHYDVGGIAIDNHGHPLPKATVEGCEQADAILFGSVGGPKWEN 83 (363)
T ss_dssp CEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTCCEEEEECCCTHHHHHHHSSSSCHHHHHHHHTSSEEEEEECCCGGGTT
T ss_pred ccEEEEeCCCCcCHHHHHHHHHHHHHHHHhcCCceEEEEEeCChHHHhhcCCcCcHHHHHHHHHCCEEEEccccCCcccc
Confidence 379999999999999999999766543 6899999999999999999999999999999999999999999985321
Q ss_pred hhHHHhhhcCCCcchhHhhhcCceEEeecccccCCCCCC--CCC-------CCCEEEEeeccCccccccceeeeCCCcee
Q 019837 85 VKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLI--PGW-------TKPICIGRHAFGDQYRATDTVIQGPGKLK 155 (335)
Q Consensus 85 ~~~~~l~~~~~s~~~~LRk~ldlyanvRPv~~~~~~~~~--~~~-------~~divivREnteg~Y~g~e~~~~~~g~~~ 155 (335)
.+. .+ ..++++|++|||+||||||+||+ +.+|++. +++ ++||+||||||||+|+|.++... .+
T Consensus 84 ~~~-~~-~~e~~~~l~LR~~ldlyanvRP~--~~~pgl~~~splk~~~~~~~vDivivREnteg~Y~g~~~~~~-~~--- 155 (363)
T 1cnz_A 84 LPP-ES-QPERGALLPLRKHFKLFSNLRPA--KLYQGLEAFCPLRADIAANGFDILCVRELTGGIYFGQPKGRE-GS--- 155 (363)
T ss_dssp SCG-GG-STTHHHHHHHHHHHTCCEEEEEE--ECCTTCGGGCSBCHHHHHHCCEEEEEEECSSGGGTCSSCEEE-CC---
T ss_pred CCc-cc-CcccchHHHHHHHcCCEEEEEEE--EecCCccCCCCCcccccCCCCCEEEEecccCCeecCCcCccc-cC---
Confidence 111 00 12456789999999999999998 6677763 222 47999999999999999753221 00
Q ss_pred eeeecCCCCccchhhhccccCccceeeeeeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchhHHHHHHHHHHh
Q 019837 156 LVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEA 235 (335)
Q Consensus 156 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r~k~Vt~v~KaNVl~~~~g~f~~~~~eva~~ 235 (335)
.+ ++.+..+++||++++|||+|+||+||++|+++||+|||+|||+ ++++|+++|+||| +
T Consensus 156 ------~~-------------~~~a~~~~~~T~~~~eRiar~AFe~A~~rrkkVt~v~KaNvlk-~~~lf~~~~~eva-~ 214 (363)
T 1cnz_A 156 ------GQ-------------YEKAFDTEVYHRFEIERIARIAFESARKRRRKVTSIDKANVLQ-SSILWREIVNDVA-K 214 (363)
T ss_dssp ------GG-------------GCEEEEEEEEEHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCH-HHHHHHHHHHHHH-T
T ss_pred ------CC-------------CceEEEEEEEcHHHHHHHHHHHHHHHHhcCCeEEEEECCcccc-cchhHHHHHHHHH-H
Confidence 00 0124457899999999999999999999988999999999999 8999999999999 6
Q ss_pred hhhccccCCCceEeeeeHHHHHHHHHhCCCCc-EEEeCCchhhhHHhhhhhhcCccccccccccCCCCCceeeecCCCCc
Q 019837 236 NWKSKFEAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTV 314 (335)
Q Consensus 236 eY~~~~~~p~V~~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaA~l~GslGlapSanig~~~~~~~fEp~HGSA 314 (335)
+| |+|+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+||+|||+++ .+||||+||||
T Consensus 215 ey------pdI~~~~~~vD~~~m~lv~~P~~FDVivt~NlfGDIlSD~aa~l~GslGl~pSanig~~~-~a~fEpvHGSA 287 (363)
T 1cnz_A 215 TY------PDVELAHMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQG-FGLYEPAGGSA 287 (363)
T ss_dssp TC------TTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHTCGGGCEEEEECTTS-CEEEEESSCCC
T ss_pred HC------CCceEeeeeHHHHHHHHhhCcccceEEEECCcchHHHHHHHHHhcCCCcccccceeCCCC-CeEEEcCCCCh
Confidence 99 999999999999999999999999 99999999999999999999999999999999876 58999999999
Q ss_pred ccccccccCCCCCCCCccccC
Q 019837 315 TRHYRVHQKDDQGSCTYYPWI 335 (335)
Q Consensus 315 Pdiagk~~aGk~~~aNP~a~I 335 (335)
|||| |||+ |||+|||
T Consensus 288 PdiA-----Gk~i-ANP~A~I 302 (363)
T 1cnz_A 288 PDIA-----GKNI-ANPIAQI 302 (363)
T ss_dssp GGGT-----TTTC-SCCHHHH
T ss_pred hhhc-----CCCc-cCcHHHH
Confidence 9997 6666 9999986
No 19
>2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase; homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii str} PDB: 2dht_A 2e5m_A*
Probab=100.00 E-value=2.2e-93 Score=705.80 Aligned_cols=293 Identities=20% Similarity=0.212 Sum_probs=242.2
Q ss_pred ccEEEECCCCchHHHHHHHHHHHhcC-------CCceEEEEEecchhhhhccCCcccHHHHHHHHhcCeeeecCCCCCCc
Q 019837 10 NPIVEMDGDEMTRVFWKSIKDKLIFP-------FLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDE 82 (335)
Q Consensus 10 ~~I~vipGDGIGpEv~~~~~~~~~~~-------~~~i~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~lkg~~~~p~~ 82 (335)
++|++|||||||||||+++++++.+. +++|+|+++++|++++++||++||++|+++|+++|++||||+++|..
T Consensus 25 ~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~LkGav~tP~~ 104 (409)
T 2e0c_A 25 PVILYIEGDGIGPEITNAAIKVINKAVERAYGSSREIKWLEVYAGEKAEKLVNDRFPKETQEMLLKYRVVLKGPLETPIG 104 (409)
T ss_dssp BEEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEECCCTHHHHHHHSCSSCHHHHHHHHHHCEEEECCCC----
T ss_pred ceEeeCCCCCcCHHHHHHHHHHHHHHHHhhcCCCCceEEEEEechHHHHHhhCCcCCHHHHHHHHHCCEEEECCccCCCc
Confidence 57999999999999999999766433 38999999999999999999999999999999999999999999953
Q ss_pred chhhHHHhhhcCCCcchhHhhhcCceEEeecccccCCCCCCCC---C-CCCEEEEeeccCccccccceeeeCCCceee-e
Q 019837 83 ARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPG---W-TKPICIGRHAFGDQYRATDTVIQGPGKLKL-V 157 (335)
Q Consensus 83 ~~~~~~~l~~~~~s~~~~LRk~ldlyanvRPv~~~~~~~~~~~---~-~~divivREnteg~Y~g~e~~~~~~g~~~~-~ 157 (335)
.+|+|+|++|||+||||||+||++ ++|++.++ + ++|||||||||||+|+|+++....++..+. .
T Consensus 105 ---------~~~~s~~l~LR~~LdlyanvRPv~--~~~g~~splk~~~~vDivIvREnteg~Y~g~e~~~~~~~~~~v~~ 173 (409)
T 2e0c_A 105 ---------KGWKSVNVAIRLMLDLYANIRPVK--YIEGLESPLKHPEKVDMIIFRENTDDLYRGIEYPFNSEEAKKIRD 173 (409)
T ss_dssp -------------CHHHHHHHHTTCCEEEEEEE--CCTTCCCSBSCCTTCEEEEEEECSSGGGGCCEECTTSHHHHHHHH
T ss_pred ---------ccccChhHHHHHHcCCEEEEEEEe--ccCCCCCCCCCccCCcEEEEEcCCCCEeCCcccccCCCcccchhh
Confidence 258899999999999999999984 45544332 2 479999999999999999875321100000 0
Q ss_pred eecCCCCccchhhhccccCccceeeeeeeCHHHHHHHHHHHHHHHHhCC-CCEEEEeCCCcccccchhHHHHHHHHHHhh
Q 019837 158 FVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKK-WPLYLSTKNTILKKYDGRFKDIFQEVYEAN 236 (335)
Q Consensus 158 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r~-k~Vt~v~KaNVl~~~~g~f~~~~~eva~~e 236 (335)
|..+ +.. +.+++ ..+..+++||++++|||+|+||+||++|+ |+||+|||+|||+.|+|+||++|+|||+++
T Consensus 174 f~~~------~~~-~~~~~-~~a~~~~~~t~~~~eRiar~AFe~A~~r~rkkVt~v~KaNVlk~sdglf~~~~~eva~~e 245 (409)
T 2e0c_A 174 FLRK------ELK-VEIED-DTGIGIKVMSKYKTQRITRLAIQYAIEHKRKKVTIMHKGNVMKYTEGAFREWAYEVALKE 245 (409)
T ss_dssp HHHH------HSC-CCCCS-SEEEEEEEEEHHHHHHHHHHHHHHHHHTTCCEEEEEECTTTSTTTHHHHHHHHHHHHHHH
T ss_pred ccch------hcc-ccCCC-ceEEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECccchhhhhhHHHHHHHHHHHHh
Confidence 0000 000 01121 23445789999999999999999999995 579999999999999999999999999549
Q ss_pred hhccccCCC-----------------ceEeeeeHHHHHHHHHhCCCCc-EEEeCCchhhhHHhhhhhhcCcccccccccc
Q 019837 237 WKSKFEAAG-----------------IWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLV 298 (335)
Q Consensus 237 Y~~~~~~p~-----------------V~~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaA~l~GslGlapSani 298 (335)
| |+ |+++|+|||+|+||||++|++| ||||+|||||||||++|+++|||||+||+|+
T Consensus 246 y------pd~~~~~~~~~~~~~~~~~I~~~~~~vD~~~mqlv~~P~~FDVivt~NlfGDILSD~aa~l~GslGl~pSani 319 (409)
T 2e0c_A 246 Y------RDFIVTEEEINQGKPDQGKIILNDRIADNMFQQIIIRPEEYDIILAPNVNGDYISDAAGALIGNIGMLGGANI 319 (409)
T ss_dssp S------TTTEEEHHHHTTTCCCTTSEEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHTTSCGGGCEEEEE
T ss_pred C------CCccccccccccccccCCeEEEEEEEHHHHHHHHhhCcccccEEEECCcchHHHHHHHHHhcCCcccCceEEE
Confidence 9 88 9999999999999999999999 9999999999999999999999999999999
Q ss_pred CCCCCceeeecCCCCcccccccccCCCCCCCCccccC
Q 019837 299 CPDGKTIEAEAAHGTVTRHYRVHQKDDQGSCTYYPWI 335 (335)
Q Consensus 299 g~~~~~~~fEp~HGSAPdiagk~~aGk~~~aNP~a~I 335 (335)
|++ ++||||+|||||||| ||++ |||+|+|
T Consensus 320 g~~--~a~fEp~HGSAPdiA-----Gk~i-ANP~A~I 348 (409)
T 2e0c_A 320 GDE--GGMFEAIHGTAPKYA-----GKNV-ANPTGII 348 (409)
T ss_dssp ETT--EEEEEESSCCCGGGT-----TTTC-SCTHHHH
T ss_pred CCC--ceEEecCCCChhhhc-----CCcc-cCcHHHH
Confidence 954 589999999999997 6666 9999986
No 20
>2iv0_A Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, domain swapping, phosphorylation, aromatic cluster, NADP; 2.5A {Archaeoglobus fulgidus}
Probab=100.00 E-value=1.4e-93 Score=707.26 Aligned_cols=293 Identities=20% Similarity=0.171 Sum_probs=248.2
Q ss_pred ccEEEECCCCchHHHHHHHHHHHhcC----CCceEEEEEecchhhhhccCCcccHHHHHHHHhcCeeeecCCCCCCcchh
Q 019837 10 NPIVEMDGDEMTRVFWKSIKDKLIFP----FLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARV 85 (335)
Q Consensus 10 ~~I~vipGDGIGpEv~~~~~~~~~~~----~~~i~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~lkg~~~~p~~~~~ 85 (335)
++|++|||||||||||+++++++.+. +++|+|+++++|++++++||++||++|+++|+++|++||||+++|..
T Consensus 28 ~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~etl~~~k~~da~LkGav~tP~~--- 104 (412)
T 2iv0_A 28 PIIPYFEGDGIGKDVVPAAIRVLDAAADKIGKEVVWFQVYAGEDAYKLYGNYLPDDTLNAIKEFRVALKGPLTTPVG--- 104 (412)
T ss_dssp BEEEEECCSTTHHHHHHHHHHHHHHHHHHHTCCCEEEECCCSHHHHHHHSCSSCHHHHHHHHHHCEEEECCCCCCSS---
T ss_pred CEEEEECCCCcCHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHhhCCcCCHHHHHHHHHCCEEEECCccCCCC---
Confidence 56999999999999999999766544 78999999999999999999999999999999999999999999953
Q ss_pred hHHHhhhcCCCcchhHhhhcCceEEeecccccCCCCCCCCC----CCCEEEEeeccCccccccceeeeCCCceee-eeec
Q 019837 86 KEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGW----TKPICIGRHAFGDQYRATDTVIQGPGKLKL-VFVP 160 (335)
Q Consensus 86 ~~~~l~~~~~s~~~~LRk~ldlyanvRPv~~~~~~~~~~~~----~~divivREnteg~Y~g~e~~~~~~g~~~~-~~~~ 160 (335)
.+|+|+|++|||+||||||+||++ .+|++.++. ++|||||||||||+|+|+++....++..+. .|..
T Consensus 105 ------~~~~s~~l~LR~~Ldlyan~RPv~--~~~g~~splk~~~~vDivIvREnTeg~Y~G~e~~~~~~~~~~v~~~~~ 176 (412)
T 2iv0_A 105 ------GGYRSLNVTIRQVLDLYANVRPVY--YLKGVPSPIKHPEKVNFVIFRENTEDVYAGIEWPRGSEEALKLIRFLK 176 (412)
T ss_dssp ------SSSSHHHHHHHHHTTCCEEEEEEE--CCTTSCCSBSCGGGCEEEEEEECSSSGGGCCEECTTCHHHHHHHHHHH
T ss_pred ------ccccChhHHHHHHcCCeEEEEEEE--ecCCCCCCCCCcCCCCEEEEecCCCCEeCCcccccCCccccchhhccc
Confidence 258899999999999999999984 555544332 479999999999999999875321100000 0000
Q ss_pred CCCCccchhhhccccCccceeeeeeeCHHHHHHHHHHHHHHHHhCC-CCEEEEeCCCcccccchhHHHHHHHHHHhhhhc
Q 019837 161 EGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKK-WPLYLSTKNTILKKYDGRFKDIFQEVYEANWKS 239 (335)
Q Consensus 161 ~~g~~~~~~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r~-k~Vt~v~KaNVl~~~~g~f~~~~~eva~~eY~~ 239 (335)
. +.. +.+++ +.+..+++||++++|||+|+||+||++|+ ++||+|||+|||+.|+|+||++|+|||+++|
T Consensus 177 ~------~~~-~~~~~-~~a~~~~~~t~~~~eRiar~AFe~A~~r~rkkVt~v~KaNVlk~t~Glf~~~~~eva~~ey-- 246 (412)
T 2iv0_A 177 N------EFG-VTIRE-DSGIGIKPISEFATKRLVRMAIRYAIENNRKSVTLVHKGNIMKYTEGAFRDWGYEVAKQEF-- 246 (412)
T ss_dssp H------HHC-CCCCT-TEEEEEEEEEHHHHHHHHHHHHHHHHHTTCSEEEEEECTTTCTTTHHHHHHHHHHHHHHHS--
T ss_pred c------ccc-ccCCC-ceEEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECccchhhhhHHHHHHHHHHHHHhC--
Confidence 0 000 01121 23445789999999999999999999995 5799999999999999999999999995499
Q ss_pred cccCCC--------------------ceEeeeeHHHHHHHHHhCCCCc-EEEeCCchhhhHHhhhhhhcCcccccccccc
Q 019837 240 KFEAAG--------------------IWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLV 298 (335)
Q Consensus 240 ~~~~p~--------------------V~~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaA~l~GslGlapSani 298 (335)
|+ |+++|+|||+|+||||++|++| ||||+|||||||||++|+++|||||+||+||
T Consensus 247 ----pd~~~~~~~~~~~~~~~~~~~~I~~~~~~vD~~~mqlv~~P~~FDVivt~NlfGDILSD~aA~l~GslGlapsani 322 (412)
T 2iv0_A 247 ----GEYCITEDELWDKYGGKQPEGKIVVKDRIADNMFQQILTRTDEYDVIALPNLNGDYLSDAAAALIGGLGIAPGSNI 322 (412)
T ss_dssp ----TTTEECHHHHHHHHTTCCCTTCEEEEEEEGGGHHHHHHHSGGGCCEEEECHHHHHHHHHHHHHHTTCGGGCEEEEE
T ss_pred ----CCccccccchhhhccccccCCeEEEEEEEHHHHHHHHhhCcccccEEEECCcchHHHHHHHHHhcCCccccceEEE
Confidence 87 9999999999999999999999 9999999999999999999999999999999
Q ss_pred CCCCCceeeecCCCCcccccccccCCCCCCCCccccC
Q 019837 299 CPDGKTIEAEAAHGTVTRHYRVHQKDDQGSCTYYPWI 335 (335)
Q Consensus 299 g~~~~~~~fEp~HGSAPdiagk~~aGk~~~aNP~a~I 335 (335)
|++ ++||||+|||||||| ||++ |||+|+|
T Consensus 323 g~~--~a~fEp~HGSAPdiA-----Gk~i-ANP~A~I 351 (412)
T 2iv0_A 323 GDG--IGVFEPVHGSAPKYA-----GQNK-VNPTAEI 351 (412)
T ss_dssp ETT--EEEEEESSCCCSTTT-----TSSC-SCCHHHH
T ss_pred CCC--ceEEeCCCCChhhcC-----CCcc-cCcHHHH
Confidence 954 589999999999997 5666 9999986
No 21
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B
Probab=100.00 E-value=9.9e-94 Score=695.84 Aligned_cols=272 Identities=20% Similarity=0.215 Sum_probs=248.7
Q ss_pred ccEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecchhhhhccCCcccHHHHHHHHhcCeeeecCCCCCCcchhhHHH
Q 019837 10 NPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFV 89 (335)
Q Consensus 10 ~~I~vipGDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~lkg~~~~p~~~~~~~~~ 89 (335)
++|++|||||||||||+++++++.+.+++|+|+++++|+++ ++||+++|++++++|+++|++||||+++|..
T Consensus 22 ~~I~vipGDGIGpEv~~~~~~Vl~a~~~~i~~~~~~~G~~~-~~~g~~lp~~tl~~~~~~da~l~Gav~~P~~------- 93 (354)
T 3blx_B 22 YTVSFIEGDGIGPEISKSVKKIFSAANVPIEWESCDVSPIF-VNGLTTIPDPAVQSITKNLVALKGPLATPIG------- 93 (354)
T ss_dssp EECBCCCCSTTHHHHHHHHHHHHHTTTCSEECCCCCCCCEE-ETTEEECCHHHHHHHHHHSEEEECCCCCC---------
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHHcCCCeEEEEEEechhh-hhhCCCCCHHHHHHHHHCCEEEECCccCCCC-------
Confidence 78999999999999999999877777899999999999999 9999999999999999999999999999953
Q ss_pred hhhcCCCcchhHhhhcCceEEeecccccCCCCCCCCC-CCCEEEEeeccCccccccceeeeCCCceeeeeecCCCCccch
Q 019837 90 LKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGW-TKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTE 168 (335)
Q Consensus 90 l~~~~~s~~~~LRk~ldlyanvRPv~~~~~~~~~~~~-~~divivREnteg~Y~g~e~~~~~~g~~~~~~~~~~g~~~~~ 168 (335)
.+|+|+|++|||+||||||+||+ +++|++.+++ ..||+||||||||+|+|.++... +
T Consensus 94 --~~~~s~~l~lR~~ldlyan~RP~--~~~pg~~s~~~~vD~vivREnteg~Y~g~e~~~~-~----------------- 151 (354)
T 3blx_B 94 --KGHRSLNLTLRKTFGLFANVRPA--KSIEGFKTTYENVDLVLIRENTEGEYSGIEHIVC-P----------------- 151 (354)
T ss_dssp ----CCCHHHHHHHHHTEEEEEEEE--ECCTTCCCSSCSCEEEEEEECSSEEEEEEEEECS-T-----------------
T ss_pred --ccccCchHHHHHHcCCEEEEEEe--cccCCCCCCCCCccEEEEecCcCCcccCCccccc-C-----------------
Confidence 25889999999999999999998 6788887666 47999999999999999876531 1
Q ss_pred hhhccccCccceeeeeeeCHHHHHHHHHHHHHHHHhC-CCCEEEEeCCCcccccchhHHHHHHHHHHhhhhccccCCCce
Q 019837 169 LEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQK-KWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIW 247 (335)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r-~k~Vt~v~KaNVl~~~~g~f~~~~~eva~~eY~~~~~~p~V~ 247 (335)
..+..+++||++++|||+|+||+||++| +|+||++||+|||+.|+|+|+++|+||| ++| |+|+
T Consensus 152 ---------~~a~~~~~~T~~~~eRiar~AFe~A~~r~rkkVt~v~KaNvlk~sdglf~~~~~eva-~ey------pdI~ 215 (354)
T 3blx_B 152 ---------GVVQSIKLITRDASERVIRYAFEYARAIGRPRVIVVHKSTIQRLADGLFVNVAKELS-KEY------PDLT 215 (354)
T ss_dssp ---------TEEEEEEEEEHHHHHHHHHHHHHHHHHTTCSEEEEEESCTTTCHHHHHHHHHHHHHG-GGC------TTSE
T ss_pred ---------CEEEEEEEEcHHHHHHHHHHHHHHHHhcCCCeEEEEECCcchHhHHHHHHHHHHHHH-HHC------CCce
Confidence 1244578999999999999999999999 5789999999999999999999999999 599 9999
Q ss_pred EeeeeHHHHHHHHHhCCCCc---EEEeCCchhhhHHhhhhhh-cCccccccccccCCCCCceeeecCCCCcccccccccC
Q 019837 248 YEHRLIDDMVAYALKSEGGY---VWACKNYDGDVQSDFLAQG-FGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQK 323 (335)
Q Consensus 248 ~~~~~VDa~~~~lv~~P~~F---Viv~~NlfGDILSDlaA~l-~GslGlapSanig~~~~~~~fEp~HGSAPdiagk~~a 323 (335)
++|+|||+|+||||++|++| ||||+|||||||||++|++ +|||||+||+|||++. +||||+||||||||
T Consensus 216 ~~~~~vD~~~m~lv~~P~~FD~~Vivt~NlfGDIlSD~aa~l~~GslGl~pSanig~~~--a~fEp~HGSAPdiA----- 288 (354)
T 3blx_B 216 LETELIDNSVLKVVTNPSAYTDAVSVCPNLYGDILSDLNSGLSAGSLGLTPSANIGHKI--SIFEAVHGSAPDIA----- 288 (354)
T ss_dssp EEEEEHHHHHHHHHHCGGGGTTEEEEECHHHHHHHHHHHHHHHTSSGGGCEEEEEESSC--EEEEECSCCCGGGT-----
T ss_pred EEEEEHHHHHHHHhhChhhCCceEEEecCcccchhHHHHHhhccCCccccceeEECCCc--eEEecCCCChhhhc-----
Confidence 99999999999999999999 9999999999999999999 9999999999999874 89999999999996
Q ss_pred CCCCCCCccccC
Q 019837 324 DDQGSCTYYPWI 335 (335)
Q Consensus 324 Gk~~~aNP~a~I 335 (335)
||++ |||+|+|
T Consensus 289 Gk~i-ANP~A~I 299 (354)
T 3blx_B 289 GQDK-ANPTALL 299 (354)
T ss_dssp TTTC-CCTHHHH
T ss_pred CCCc-cCcHHHH
Confidence 6675 9999986
No 22
>1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics PSI, protein structure initiative, joint center for structu genomics; 1.90A {Thermotoga maritima} SCOP: c.77.1.1
Probab=100.00 E-value=1.9e-93 Score=695.94 Aligned_cols=278 Identities=16% Similarity=0.097 Sum_probs=244.1
Q ss_pred ccEEEECCCCchHHHHHHHHHHHhcC----CCceEEEEEecchhhhhccCCcccHHHHHHHHhcCeeeecCCCCCCcchh
Q 019837 10 NPIVEMDGDEMTRVFWKSIKDKLIFP----FLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARV 85 (335)
Q Consensus 10 ~~I~vipGDGIGpEv~~~~~~~~~~~----~~~i~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~lkg~~~~p~~~~~ 85 (335)
.+|+||||||||||||+++++++.+. +++|+|+++++|++++++||+++|++|+++|+++|++||||+++|...+.
T Consensus 13 ~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~~tl~~~~~~da~L~Gavg~P~~~~~ 92 (366)
T 1vlc_A 13 MKIAVLPGDGIGPEVVREALKVLEVVEKKTGKTFEKVFGHIGGDAIDRFGEPLPEETKKICLEADAIFLGSVGGPKWDDL 92 (366)
T ss_dssp EEEEEEEESTHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCTHHHHHHHSSSSCHHHHHHHHHSSEEEEEECCCGGGTTS
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHhhCCcCCHHHHHHHHHCCEEEECCccCCccccC
Confidence 48999999999999999999777555 79999999999999999999999999999999999999999999853210
Q ss_pred hHHHhhhcCCCcchhHhhhcCceEEeecccccCCCCCC--CCC-------CCCEEEEeeccCccccccceeeeCCCceee
Q 019837 86 KEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLI--PGW-------TKPICIGRHAFGDQYRATDTVIQGPGKLKL 156 (335)
Q Consensus 86 ~~~~l~~~~~s~~~~LRk~ldlyanvRPv~~~~~~~~~--~~~-------~~divivREnteg~Y~g~e~~~~~~g~~~~ 156 (335)
+ ..+ ....++|++|||+||||||+||+ +.+|++. +++ +.||+||||||||+|+|.++... +
T Consensus 93 ~-~~~-r~~~~~~l~LRk~ldlyaN~RP~--~~~pgl~~~splk~~~~~~~vDivIvREnteG~Y~g~~~~~~-~----- 162 (366)
T 1vlc_A 93 P-PEK-RPEIGGLLALRKMLNLYANIRPI--KVYRSLVHVSPLKEKVIGSGVDLVTVRELSYGVYYGQPRGLD-E----- 162 (366)
T ss_dssp C-STT-SHHHHTHHHHHHHTTCCEEEEEE--ECCGGGGGGSSSCHHHHTTCCEEEEEEECSSGGGTEEEEEEC-S-----
T ss_pred C-ccc-CcccchhHHHHHHhCCEEEEEEc--cccCCCCCcCCCcccccCCCceEEEEEeCCCCeecCCccccC-C-----
Confidence 0 000 00112489999999999999998 5667664 232 47999999999999999876531 1
Q ss_pred eeecCCCCccchhhhccccCccceeeeeeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchhHHHHHHHHHHhh
Q 019837 157 VFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEAN 236 (335)
Q Consensus 157 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r~k~Vt~v~KaNVl~~~~g~f~~~~~eva~~e 236 (335)
..+..+++|||+++|||+|+||+||++|+|+||+|||+|||+ ++|+|+++|+||| ++
T Consensus 163 ---------------------~~a~~~~~~Tr~~~eRIar~AFe~A~~rrkkVt~v~KaNvlk-t~glf~~~~~eva-~e 219 (366)
T 1vlc_A 163 ---------------------EKGFDTMIYDRKTVERIARTAFEIAKNRRKKVTSVDKANVLY-SSMLWRKVVNEVA-RE 219 (366)
T ss_dssp ---------------------SCEEEECCCCHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCH-HHHHHHHHHHHHH-TT
T ss_pred ---------------------CeEEEEEEEcHHHHHHHHHHHHHHHHHcCCeEEEEECCcccc-cchHHHHHHHHHH-HH
Confidence 124557899999999999999999999988999999999999 9999999999999 59
Q ss_pred hhccccCCCceEeeeeHHHHHHHHHhCCCCc-EEEeCCchhhhHHhhhhhhcCccccccccccCCCCCceeeecCCCCcc
Q 019837 237 WKSKFEAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVT 315 (335)
Q Consensus 237 Y~~~~~~p~V~~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaA~l~GslGlapSanig~~~~~~~fEp~HGSAP 315 (335)
| |+|+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+||+|+| + .+||||+|||||
T Consensus 220 y------pdV~~~~~~VD~~~mqlv~~P~~FDVivt~NlfGDILSD~aa~l~GslGl~pSanig-~--~alfEpvHGSAP 290 (366)
T 1vlc_A 220 Y------PDVELTHIYVDNAAMQLILKPSQFDVILTTNMFGDILSDESAALPGSLGLLPSASFG-D--KNLYEPAGGSAP 290 (366)
T ss_dssp C------TTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHTTSSSCGGGCEEEEES-S--SEEEEESSCCCT
T ss_pred C------CCceEEeeeHHHHHHHHhhCcccceEEEEcchhHHHHHHHHHHhcCccccccEeeeC-C--ceeeecCCCchh
Confidence 9 999999999999999999999999 99999999999999999999999999999999 5 489999999999
Q ss_pred cccccccCCCCCCCCccccC
Q 019837 316 RHYRVHQKDDQGSCTYYPWI 335 (335)
Q Consensus 316 diagk~~aGk~~~aNP~a~I 335 (335)
||| |||+ |||+|||
T Consensus 291 dIA-----Gk~i-ANP~A~I 304 (366)
T 1vlc_A 291 DIA-----GKNI-ANPIAQI 304 (366)
T ss_dssp TTT-----TTTC-SCCHHHH
T ss_pred hcC-----CCCc-cCcHHHH
Confidence 996 6676 9999986
No 23
>1tyo_A Isocitrate dehydrogenase; enzyme-ethenonadp complex, oxidoreductase; HET: ENP; 2.15A {Aeropyrum pernix} PDB: 1v94_A 1xgv_A 1xkd_A*
Probab=100.00 E-value=4.5e-93 Score=707.19 Aligned_cols=296 Identities=18% Similarity=0.088 Sum_probs=247.5
Q ss_pred ccEEEECCCCchHHHHHHHHHHHhcC-------CCceEEEEEecchhhhhccCCcccHHHHHHHHhcCeeeecCCCCCCc
Q 019837 10 NPIVEMDGDEMTRVFWKSIKDKLIFP-------FLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDE 82 (335)
Q Consensus 10 ~~I~vipGDGIGpEv~~~~~~~~~~~-------~~~i~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~lkg~~~~p~~ 82 (335)
++|++|||||||||||+++++++.+. +++|+|+++++|++++++||++||++|+++|+++|++||||+++|..
T Consensus 36 ~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~etl~~~k~~da~LkGav~tP~~ 115 (435)
T 1tyo_A 36 PVVAFIRGDGVGPEVVESALKVVDAAVKKVYGGSRRIVWWELLAGHLAREKCGELLPKATLEGIRLARVALKGPLETPVG 115 (435)
T ss_dssp BEEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEECCCSHHHHHHHSSSSCHHHHHHHHHHSEEEECCCCCCTT
T ss_pred CEEEEECCCCcCHHHHHHHHHHHHHHHHhhcCCCcceEEEEEechHHHHHhhCCcCCHHHHHHHHhCCeEEECCccCCCc
Confidence 67999999999999999999766433 38999999999999999999999999999999999999999999953
Q ss_pred chhhHHHhhhcCCCcchhHhhhcCceEEeecccccCCCCCCCC-CCCCEEEEeeccCccccccceeeeCCCceeeeeecC
Q 019837 83 ARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPG-WTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPE 161 (335)
Q Consensus 83 ~~~~~~~l~~~~~s~~~~LRk~ldlyanvRPv~~~~~~~~~~~-~~~divivREnteg~Y~g~e~~~~~~g~~~~~~~~~ 161 (335)
++|+|+|++|||+||||||+||+++.++|++... +++|||||||||||+|+|+++.. .++.....+.-
T Consensus 116 ---------~~~~s~~l~LRk~LdlyanlRPv~~~gv~splk~~~~vDivIvREnTeg~Y~G~e~~~-~~~~~~~v~~~- 184 (435)
T 1tyo_A 116 ---------TGYRSLNVAIRQALDLYANIRPVRYYGQPAPHKYADRVDMVIFRENTEDVYAGIEWPH-DSPEAARIRRF- 184 (435)
T ss_dssp ---------SCTTHHHHHHHHHHTCCEEEEEEECCSCCCSBTTGGGCEEEEEEECSSSGGGCCEECT-TSHHHHHHHHH-
T ss_pred ---------ccccChhHHHHHHcCCEEEeEEEEecCCCCCCCCcCCCcEEEEecCCCCeeccccccc-CCccccceecc-
Confidence 3588999999999999999999863344433221 35899999999999999998752 11100000000
Q ss_pred CCCccchhhhccccCccceeeeeeeCHHHHHHHHHHHHHHHHhC-CCCEEEEeCCCcccccchhHHHHHHHHHHhhhhcc
Q 019837 162 GKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQK-KWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSK 240 (335)
Q Consensus 162 ~g~~~~~~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r-~k~Vt~v~KaNVl~~~~g~f~~~~~eva~~eY~~~ 240 (335)
. .+.....+++ ..+..+++||++++|||+|+||+||++| +++||+|||+|||+.|+|+|+++|+|||+++|
T Consensus 185 ---~-~~~~~~~~~~-~~a~~~~~~T~~~~eRIar~AFe~A~~r~rkkVT~v~KaNVlk~tdGlf~~~~~eva~~ey--- 256 (435)
T 1tyo_A 185 ---L-AEEFGISIRE-DAGIGVKPISRFATRRLMERALEWALRNGNTVVTIMHKGNIMKYTEGAFMRWAYEVALEKF--- 256 (435)
T ss_dssp ---H-HHHHCCCCCT-TEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEEECTTTSTTTHHHHHHHHHHHHHHHS---
T ss_pred ---c-hhhccccCCC-CeEEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhhhHHHHHHHHHHHHHhC---
Confidence 0 0000001111 2345578999999999999999999998 57899999999999999999999999995499
Q ss_pred ccCCC--------------------ceEeeeeHHHHHHHHHhCCCCc-EEEeCCchhhhHHhhhhhhcCccccccccccC
Q 019837 241 FEAAG--------------------IWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVC 299 (335)
Q Consensus 241 ~~~p~--------------------V~~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaA~l~GslGlapSanig 299 (335)
|+ |+++|+|||+|+||||++|++| ||||+|||||||||++|+++|||||+||+|||
T Consensus 257 ---pd~~~~e~~~~~~~~~~~~~~~I~~~~~~vD~~~mqlv~~P~~FDVivt~NlfGDILSD~aA~l~GslGlapSanig 333 (435)
T 1tyo_A 257 ---REHVVTEQEVQEKYGGVRPEGKILVNDRIADNMLQQIITRPWDYQVIVAPNLNGDYISDAASALVGGIGMAAGMNMG 333 (435)
T ss_dssp ---GGGEEEHHHHHHHSTTCCCTTCEEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHTTCGGGCEEEEEC
T ss_pred ---CCcccccccccccccccccCCeEEEEeeeHHHHHHHHhhCCCCceEEEEcccchHHHHHHHHhhcCCcccCceeeEC
Confidence 77 9999999999999999999999 99999999999999999999999999999999
Q ss_pred CCCCceeeecCCCCcccccccccCCCCCCCCccccC
Q 019837 300 PDGKTIEAEAAHGTVTRHYRVHQKDDQGSCTYYPWI 335 (335)
Q Consensus 300 ~~~~~~~fEp~HGSAPdiagk~~aGk~~~aNP~a~I 335 (335)
++. +||||+|||||||| |||+ |||+|+|
T Consensus 334 ~~~--a~fEpvHGSAPdiA-----Gk~i-ANP~A~I 361 (435)
T 1tyo_A 334 DGI--AVAEPVHGTAPKYA-----GKDL-INPSAEI 361 (435)
T ss_dssp SSC--EEEEESSCCCGGGT-----TSSC-SCCHHHH
T ss_pred CCc--eeeecCCCChHHhc-----CCCC-cCcHHHH
Confidence 764 89999999999997 6666 9999986
No 24
>1hqs_A Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic acid cycle, oxidoreductase, protein phosphorylation, NADP; HET: CME CIT; 1.55A {Bacillus subtilis} SCOP: c.77.1.1
Probab=100.00 E-value=6.5e-93 Score=704.49 Aligned_cols=296 Identities=21% Similarity=0.226 Sum_probs=250.1
Q ss_pred ccEEEECCCCchHHHHHHHHHHHhcC-------CCceEEEEEecchhhhhccCCcccHHHHHHHHhcCeeeecCCCCCCc
Q 019837 10 NPIVEMDGDEMTRVFWKSIKDKLIFP-------FLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDE 82 (335)
Q Consensus 10 ~~I~vipGDGIGpEv~~~~~~~~~~~-------~~~i~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~lkg~~~~p~~ 82 (335)
++|++|||||||||||+++++++.+. +++|+|+++++|++++++||++||++|+++|+++|++||||+++|.+
T Consensus 20 ~~I~vipGDGIGpEI~~~a~~Vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~lkGav~tP~~ 99 (423)
T 1hqs_A 20 PIIPFIEGDGTGPDIWNAASKVLEAAVEKAYKGEKKITWKEVYAGEKAYNKTGEWLPAETLDVIREYFIAIKGPLTTPVG 99 (423)
T ss_dssp BEEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEECCCTHHHHHHHSCSSCHHHHHHHHHHCEEEECCCCCCSS
T ss_pred CEEEEECCCCcCHHHHHHHHHHHHHHHhhhcCCCCceEEEEEecCHHHHHhhCCcCcHHHHHHHHHCCEEEECCccCCCC
Confidence 67999999999999999999766432 28999999999999999999999999999999999999999999953
Q ss_pred chhhHHHhhhcCCCcchhHhhhcCceEEeecccccCCCCCCCCC----CCCEEEEeeccCccccccceeeeCCCceeee-
Q 019837 83 ARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGW----TKPICIGRHAFGDQYRATDTVIQGPGKLKLV- 157 (335)
Q Consensus 83 ~~~~~~~l~~~~~s~~~~LRk~ldlyanvRPv~~~~~~~~~~~~----~~divivREnteg~Y~g~e~~~~~~g~~~~~- 157 (335)
++|+|+|++|||.||||||+||+ +.+|++.+++ ++|||||||||||+|+|+++.. ..+..+..
T Consensus 100 ---------~~~~s~nl~LRk~LdlyanvRPv--~~~pg~~splk~~~~vDivIvREnteg~Y~G~e~~~-g~~~~~~v~ 167 (423)
T 1hqs_A 100 ---------GGIRSLNVALRQELDLFVCLRPV--RYFTGVPSPVKRPEDTDMVIFRENTEDIYAGIEYAK-GSEEVQKLI 167 (423)
T ss_dssp ---------SSSCCHHHHHHHHTTCCEEEEEE--ECCTTCCCSBSCGGGCEEEEEEECSCGGGGCCEECT-TCHHHHHHH
T ss_pred ---------cCcCChhHHHHHHcCCEEEEEEE--eccCCCCCCCCCCCCCcEEEEecCCCCeeccccccc-CCcccccee
Confidence 36899999999999999999998 5667665543 4799999999999999998752 11110000
Q ss_pred -eecCCCCccchhhhccccCccceeeeeeeCHHHHHHHHHHHHHHHHhC-CCCEEEEeCCCcccccchhHHHHHHHHHHh
Q 019837 158 -FVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQK-KWPLYLSTKNTILKKYDGRFKDIFQEVYEA 235 (335)
Q Consensus 158 -~~~~~g~~~~~~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r-~k~Vt~v~KaNVl~~~~g~f~~~~~eva~~ 235 (335)
|.++ ....+...+++ ..+..+++||++++|||+|+||+||++| +++||+|||+|||+.|+|+|+++|+|||++
T Consensus 168 ~~~~~----~~~~~~~~~~~-~~a~~~~~~T~~~~eRiar~AFe~A~~r~rkkVt~v~KaNVlk~t~Glf~~~~~eva~~ 242 (423)
T 1hqs_A 168 SFLQN----ELNVNKIRFPE-TSGIGIKPVSEEGTSRLVRAAIDYAIEHGRKSVTLVHKGNIMKFTEGAFKNWGYELAEK 242 (423)
T ss_dssp HHHHH----HSCCCCCSCGG-GEEEEEEEEEHHHHHHHHHHHHHHHHHHTCSEEEEEECTTTSTTTHHHHHHHHHHHHHH
T ss_pred ccccc----cccccccccCC-ceEEEEEEEcHHHHHHHHHHHHHHHHHcCCCcEEEEECCccchhhhHHHHHHHHHHHHH
Confidence 0000 00001111221 2344578999999999999999999998 578999999999999999999999999955
Q ss_pred hhhccccCCC--------------------------------ceEeeeeHHHHHHHHHhCCCCc-EEEeCCchhhhHHhh
Q 019837 236 NWKSKFEAAG--------------------------------IWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDF 282 (335)
Q Consensus 236 eY~~~~~~p~--------------------------------V~~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDl 282 (335)
+| |+ |+++|+|||+|+||||++|++| ||||+|||||||||+
T Consensus 243 ey------pd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~vD~~~mqlv~~P~~FDVivt~NlfGDILSD~ 316 (423)
T 1hqs_A 243 EY------GDKVFTWAQYDRIAEEQGKDAANKAQSEAEAAGKIIIKDSIADIFLQQILTRPNEFDVVATMNLNGDYISDA 316 (423)
T ss_dssp HH------GGGEEEHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHH
T ss_pred hC------CCcccchhhhccccccccccccccccccccccCeEEEEEeeHHHHHHHHhhCCCCccEEEECCcchHHHHHH
Confidence 99 77 8999999999999999999999 999999999999999
Q ss_pred hhhhcCccccccccccCC-CCCceeeecCCCCcccccccccCCCCCCCCccccC
Q 019837 283 LAQGFGSLGLMTSVLVCP-DGKTIEAEAAHGTVTRHYRVHQKDDQGSCTYYPWI 335 (335)
Q Consensus 283 aA~l~GslGlapSanig~-~~~~~~fEp~HGSAPdiagk~~aGk~~~aNP~a~I 335 (335)
+|+++|||||+||+|||+ ++ ++||||+|||||||| ||++ |||+|+|
T Consensus 317 aA~l~GslGl~pSanigp~~~-~alfEp~HGSAPdiA-----Gk~i-ANP~A~I 363 (423)
T 1hqs_A 317 LAAQVGGIGIAPGANINYETG-HAIFEATHGTAPKYA-----GLDK-VNPSSVI 363 (423)
T ss_dssp HHHHTTCTTTCEEEEECTTTC-CEEEEESCCCCGGGT-----TTTC-SCCHHHH
T ss_pred HHhhcCCcccCccceecCCCC-ceEEecCCCChhhhC-----CCCC-cCcHHHH
Confidence 999999999999999995 33 589999999999996 6675 9999986
No 25
>2d4v_A Isocitrate dehydrogenase; alpha and beta protein, isocitrate/isopropylmalate dehydrogenase-like fold, oxidoreductase; HET: FLC NAD; 1.90A {Acidithiobacillus thiooxidans}
Probab=100.00 E-value=1.8e-92 Score=701.90 Aligned_cols=295 Identities=20% Similarity=0.183 Sum_probs=248.8
Q ss_pred ccEEEECCCCchHHHHHHHHHHHhcC-------CCceEEEEEecchhhhhccCC--cccHHHHHHHHhcCeeeecCCCCC
Q 019837 10 NPIVEMDGDEMTRVFWKSIKDKLIFP-------FLELDIKYFDLGLPNRDATDD--KVTVESAEATLKYNVAIKCATITP 80 (335)
Q Consensus 10 ~~I~vipGDGIGpEv~~~~~~~~~~~-------~~~i~~~~~~~G~~~~~~~G~--~lp~~tl~~~~~~da~lkg~~~~p 80 (335)
++|++|||||||||||+++++++.+. +++|+|+++++|++++++||+ +||++|+++|+++|++||||+++|
T Consensus 27 ~~I~vipGDGIGpEV~~aa~~Vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~~~lp~etl~~~k~~da~lkGav~tP 106 (429)
T 2d4v_A 27 PIIPFIEGDGIGCDVTPAMRSVVDAAVAKVYGGQRQIAWMELFAGQKAVQLYGEGQYLPDETMAAIREYKVAIKGPLETP 106 (429)
T ss_dssp BEEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEEECCTHHHHHHHCTTCSSCHHHHHHHHHHCEEEECCCCCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHHHhhcCCCCceEEEEEeeehhhhhccCCCCCCcHHHHHHHHHCCEEEECCccCC
Confidence 67999999999999999999766433 389999999999999999999 999999999999999999999999
Q ss_pred CcchhhHHHhhhcCCCcchhHhhhcCceEEeecccccCCCCCCCCC----CCCEEEEeeccCccccccceeeeCCCceee
Q 019837 81 DEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGW----TKPICIGRHAFGDQYRATDTVIQGPGKLKL 156 (335)
Q Consensus 81 ~~~~~~~~~l~~~~~s~~~~LRk~ldlyanvRPv~~~~~~~~~~~~----~~divivREnteg~Y~g~e~~~~~~g~~~~ 156 (335)
.. .+|+|+|++|||+||||||+||+ +.+|++.++. ++|||||||||||+|+|+++....++..+.
T Consensus 107 ~~---------~~~~s~~l~LRk~LdLyanvRPv--~~~~gv~splk~~~~vDivIvREnTeg~Y~G~e~~~~~~~~~~v 175 (429)
T 2d4v_A 107 VG---------GGIRSLNVAMRQDLDLYVCLRPV--RYFEGTPSPMRHPEKVDMVIFRENSEDIYAGIEWPAGSPEAEKI 175 (429)
T ss_dssp SS---------SSSCCHHHHHHHHTTCCEEEEEE--ECCTTCCCSBSCGGGCEEEEEEECSCGGGGCCEECTTCHHHHHH
T ss_pred Cc---------ccccChhHHHHHHcCCEEEEEEE--EecCCCCCCCCCcCCCCEEEEEeCCCCeecCcccccCCcccccc
Confidence 53 35899999999999999999998 4555554332 479999999999999999875321100000
Q ss_pred -eeecC-CCCccchhhhccccCccceeeeeeeCHHHHHHHHHHHHHHHHhCC-CCEEEEeCCCcccccchhHHHHHHHHH
Q 019837 157 -VFVPE-GKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKK-WPLYLSTKNTILKKYDGRFKDIFQEVY 233 (335)
Q Consensus 157 -~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r~-k~Vt~v~KaNVl~~~~g~f~~~~~eva 233 (335)
.|.++ .+ .+...+++ +.+..+++||++++|||+|+||+||++|+ ++||+|||+|||+.|+|+||++|+|||
T Consensus 176 ~~~~~~~~~-----~~~~~~~~-~~a~~~~~~T~~~~eRIar~AFe~A~~r~rkkVT~v~KaNVlk~tdGlf~~~~~eva 249 (429)
T 2d4v_A 176 IRFLREEMG-----VTKIRFPD-SSAIGIKPVSTEGSERLIRRTIQYALEHGKPSVSLVHKGNIMKFTEGGFRDWGYALA 249 (429)
T ss_dssp HHHHHHTSC-----CCCCSCGG-GEEEEEEEEEHHHHHHHHHHHHHHHHHTTCSEEEEEECTTTSTTTHHHHHHHHHHHH
T ss_pred eeccccccc-----cccccCCC-ceEEEEEEecHHHHHHHHHHHHHHHHhcCCCeEEEEECCccchhhhHHHHHHHHHHH
Confidence 01100 00 01112222 23445689999999999999999999995 679999999999999999999999999
Q ss_pred HhhhhccccCCC--------------------------------ceEeeeeHHHHHHHHHhCCCCc-EEEeCCchhhhHH
Q 019837 234 EANWKSKFEAAG--------------------------------IWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQS 280 (335)
Q Consensus 234 ~~eY~~~~~~p~--------------------------------V~~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILS 280 (335)
+++| |+ |+++|+|||+|+||||++|++| ||||+||||||||
T Consensus 250 ~~ey------pd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~vD~~~mqlv~~P~~fDVivt~NlfGDILS 323 (429)
T 2d4v_A 250 EREF------AGRVFTWRQKAAISKAEGKAAGQKAEQQAIADGKLIIKDVIADNFLQQILLRPEDYSVVATLNLNGDYVS 323 (429)
T ss_dssp HHHS------TTTEEEHHHHHHHHHHHCHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHCGGGCCEEEECHHHHHHHH
T ss_pred HHhC------CCccccccccccccccccccccchhccccccCCeeEEEEeeHHHHHHHHhhCcccCcEEEECCcccHHHH
Confidence 5599 87 9999999999999999999999 9999999999999
Q ss_pred hhhhhhcCccccccccccCCCCCceeeecCCCCcccccccccCCCCCCCCccccC
Q 019837 281 DFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKDDQGSCTYYPWI 335 (335)
Q Consensus 281 DlaA~l~GslGlapSanig~~~~~~~fEp~HGSAPdiagk~~aGk~~~aNP~a~I 335 (335)
|++|+++|||||+||+|||++ ++||||+|||||||| ||++ |||+|+|
T Consensus 324 D~aA~l~GslGl~pSanig~~--~a~fEpvHGSAPdiA-----Gk~i-ANP~A~I 370 (429)
T 2d4v_A 324 DALAAEVGGIGMAPGANLSDT--HAIFEATHGTAPDIA-----GQGK-ANPSSLI 370 (429)
T ss_dssp HHHHHHTTCGGGCCCEEECSS--CEEEECSCCCCTTTT-----TTTC-CCCHHHH
T ss_pred HHHHHhcCCHhhcCeeEECCC--ceEEecCCCChhHhc-----CCCC-cCcHHHH
Confidence 999999999999999999954 489999999999997 5566 9999986
No 26
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1
Probab=100.00 E-value=2.1e-92 Score=682.79 Aligned_cols=267 Identities=18% Similarity=0.175 Sum_probs=243.6
Q ss_pred ccEEEECCCCchHHHHHHHHHHHhcC----CCceEEEEEecchhhhhccCCcccHHHHHHHHhcCeeeecCCCCCCcchh
Q 019837 10 NPIVEMDGDEMTRVFWKSIKDKLIFP----FLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARV 85 (335)
Q Consensus 10 ~~I~vipGDGIGpEv~~~~~~~~~~~----~~~i~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~lkg~~~~p~~~~~ 85 (335)
++|++|||||||||||+++++++.+. +++|+|+++++|++++++||+++|++++++|+++|++||||+++|..
T Consensus 2 ~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~g~~lp~~t~~~~~~~da~l~Gav~tP~~--- 78 (336)
T 1wpw_A 2 FTVALIQGDGIGPEIVSKSKRILAKINELYSLPIEYIEVEAGDRALARYGEALPKDSLKIIDKADIILKGPVGESAA--- 78 (336)
T ss_dssp EEEEEECCSTTHHHHHHHHHHHHHHHHHHTTCCEEEEEECCSHHHHHHSSSSSCHHHHHHHHTCSEEEECCCCTTHH---
T ss_pred cEEEEECCCCcCHHHHHHHHHHHHHHHHhhCCCeEEEEEecchHHHHhhCCcCCHHHHHHHHHCCEEEECCcCCCCc---
Confidence 68999999999999999999776544 79999999999999999999999999999999999999999999831
Q ss_pred hHHHhhhcCCCcchhHhhhcCceEEeecccccCCCCCCCCCC-CCEEEEeeccCccccccceeeeCCCceeeeeecCCCC
Q 019837 86 KEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWT-KPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKD 164 (335)
Q Consensus 86 ~~~~l~~~~~s~~~~LRk~ldlyanvRPv~~~~~~~~~~~~~-~divivREnteg~Y~g~e~~~~~~g~~~~~~~~~~g~ 164 (335)
. +|++|||+||||||+||+ +++|++.+.++ .||+||||||||+|+|.++... +
T Consensus 79 ---------~-~~l~lR~~ldlyan~RP~--~~~pg~~~~~~~~D~vivREnteg~Y~g~~~~~~-~------------- 132 (336)
T 1wpw_A 79 ---------D-VVVKLRQIYDMYANIRPA--KSIPGIDTKYGNVDILIVRENTEDLYKGFEHIVS-D------------- 132 (336)
T ss_dssp ---------H-HHHHHHHTTTCCEEEEEE--ECCTTTCCSCSCCEEEEEEECSSBTTTCCEEEEE-T-------------
T ss_pred ---------c-hHHHHHHHhCCEEEEEEE--eccCCCCCCCCCCcEEEEecCccCeEcCCccccC-C-------------
Confidence 1 679999999999999998 77888876664 7999999999999999876531 1
Q ss_pred ccchhhhccccCccceeeeeeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchhHHHHHHHHHHhhhhccccCC
Q 019837 165 EKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAA 244 (335)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r~k~Vt~v~KaNVl~~~~g~f~~~~~eva~~eY~~~~~~p 244 (335)
..+..+++||++++|||+|+||+||++|+++||++||+|||+.|+|+|+++|+|||+ +
T Consensus 133 -------------~va~~~~~~T~~~~eRiar~AF~~A~~rrkkvt~v~KaNvlk~t~glf~~~~~eva~-~-------- 190 (336)
T 1wpw_A 133 -------------GVAVGMKIITRFASERIAKVGLNFALRRRKKVTCVHKANVMRITDGLFAEACRSVLK-G-------- 190 (336)
T ss_dssp -------------TEEEEEEEEEHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCTTHHHHHHHHHHHHHT-T--------
T ss_pred -------------CeEEEEEEecHHHHHHHHHHHHHHHHHhCCeEEEEECCcchhhhhHHHHHHHHHHHH-h--------
Confidence 124446899999999999999999999988999999999999999999999999984 2
Q ss_pred CceEeeeeHHHHHHHHHhCCCCc-EEEeCCchhhhHHhhhhhhcCccccccccccCCCCCceeeecCCCCcccccccccC
Q 019837 245 GIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQK 323 (335)
Q Consensus 245 ~V~~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaA~l~GslGlapSanig~~~~~~~fEp~HGSAPdiagk~~a 323 (335)
+|+++|+|||+|+||||++|++| ||||+|||||||||++|+++|||||+||+|+|+++ +||||+||||||||
T Consensus 191 ~I~~~~~~vD~~~~~lv~~P~~FDVivt~NlfGDIlSD~aa~l~GslGl~pSanig~~~--a~fEp~HGSApdia----- 263 (336)
T 1wpw_A 191 KVEYSEMYVDAAAANLVRNPQMFDVIVTENVYGDILSDEASQIAGSLGIAPSANIGDKK--ALFEPVHGAAFDIA----- 263 (336)
T ss_dssp TSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHTCGGGCEEEEECSSC--EEEEESSCCCTTTT-----
T ss_pred CceeEEEeHHHHHHHHhhCcccceEEEEcCcchHHHHHHHHHhcCCccccceEEECCCC--ceEeCCCCCchhhC-----
Confidence 89999999999999999999999 99999999999999999999999999999999765 89999999999996
Q ss_pred CCCCCCCccccC
Q 019837 324 DDQGSCTYYPWI 335 (335)
Q Consensus 324 Gk~~~aNP~a~I 335 (335)
||++ |||+|||
T Consensus 264 Gk~i-ANP~A~I 274 (336)
T 1wpw_A 264 GKNI-GNPTAFL 274 (336)
T ss_dssp TSSC-CCTHHHH
T ss_pred CCCC-cCcHHHH
Confidence 6676 9999986
No 27
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A*
Probab=100.00 E-value=3.6e-93 Score=690.78 Aligned_cols=272 Identities=15% Similarity=0.129 Sum_probs=245.2
Q ss_pred cccEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecchhhhhccCCcccHHHHHHHHhcCeeeecCCCCCCcchhhHH
Q 019837 9 ANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEF 88 (335)
Q Consensus 9 ~~~I~vipGDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~lkg~~~~p~~~~~~~~ 88 (335)
.++|+||||||||||||+++++++.+.+++|+|+++++|+ +||+++|++++++|+++|++||||+++|.. +
T Consensus 17 ~~~I~vipGDGIGpEv~~~~~~Vl~a~~~~i~~~~~~~G~----~~g~~lp~~tl~~~~~~da~l~Gav~~P~~-~---- 87 (349)
T 3blx_A 17 RFTVTLIPGDGVGKEITDSVRTIFEAENIPIDWETINIKQ----TDHKEGVYEAVESLKRNKIGLKGLWHTPAD-Q---- 87 (349)
T ss_dssp CEEEEEEEESHHHHHHHHHHHHHHHHTTCSEEEEECCCSS----TTCHHHHHHHHHHHHHHSEEEEEECCSHHH-H----
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHHcCCCeEEEEEecCc----ccCCcCcHHHHHHHHHCCEEEECCccCCCC-C----
Confidence 4799999999999999999998777778999999999998 799999999999999999999999999842 1
Q ss_pred HhhhcCCCcchhHhhhcCceEEeecccccCCCCCCCCCC-CCEEEEeeccCccccccceeeeCCCceeeeeecCCCCccc
Q 019837 89 VLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWT-KPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKT 167 (335)
Q Consensus 89 ~l~~~~~s~~~~LRk~ldlyanvRPv~~~~~~~~~~~~~-~divivREnteg~Y~g~e~~~~~~g~~~~~~~~~~g~~~~ 167 (335)
.+|+|+|++|||+||||||+||+ +++|++.+.++ .||+||||||||+|+|.++... +|
T Consensus 88 ---~~~~s~~l~lR~~ldlyan~RP~--~~~pg~~~~~~~vD~vivREnteg~Y~g~e~~~~-~g--------------- 146 (349)
T 3blx_A 88 ---TGHGSLNVALRKQLDIYANVALF--KSLKGVKTRIPDIDLIVIRENTEGEFSGLEHESV-PG--------------- 146 (349)
T ss_dssp ---HTCHHHHHHHHHTSCEEEEEEEE--ECCTTCCCSSCSCEEEEEEECSSGGGGCEEEECS-TT---------------
T ss_pred ---CCccCchHHHHHHcCCEEEEEEE--eccCCCCCCCCCcCEEEEecCCCCcEeCCceecc-CC---------------
Confidence 25778999999999999999998 67888876664 7999999999999999876531 11
Q ss_pred hhhhccccCccceeeeeeeCHHHHHHHHHHHHHHHHhC-CCCEEEEeCCCcccccchhHHHHHHHHHHhhhhccccCCCc
Q 019837 168 ELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQK-KWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGI 246 (335)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r-~k~Vt~v~KaNVl~~~~g~f~~~~~eva~~eY~~~~~~p~V 246 (335)
.+..+++||++++|||+|+||+||++| +|+||++||+|||+.|+|+|+++|+|||+++| |+|
T Consensus 147 -----------va~~~~~~T~~~~eRiar~AF~~A~~r~rkkVt~v~KaNvlk~sdglf~~~~~eva~~ey------p~i 209 (349)
T 3blx_A 147 -----------VVESLKVMTRPKTERIARFAFDFAKKYNRKSVTAVHKANIMKLGDGLFRNIITEIGQKEY------PDI 209 (349)
T ss_dssp -----------EEEEEEEEEHHHHHHHHHHHHHHHHHTTCCEEEEEECTTTSTTHHHHHHHHHHHHHHHHC------TTS
T ss_pred -----------eEEEEEEeCHHHHHHHHHHHHHHHHhcCCCcEEEEeCCccchhhHHHHHHHHHHHHHhhC------CCe
Confidence 133478999999999999999999999 57899999999999999999999999994599 999
Q ss_pred eEeeeeHHHHHHHHHhCCCCc-EEEeCCchhhhHHhhhhhhcCccccccccccCCCCCceeeecCC-CCcccccccccCC
Q 019837 247 WYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAH-GTVTRHYRVHQKD 324 (335)
Q Consensus 247 ~~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaA~l~GslGlapSanig~~~~~~~fEp~H-GSAPdiagk~~aG 324 (335)
+++|+|||+|+||||++|++| ||||+|||||||||++|+++|||||+||+|+|++. +||||+| ||||||| |
T Consensus 210 ~~~~~~vD~~~~qlv~~P~~FDVivt~NlfGDIlSD~aa~l~GslGl~pSanig~~~--a~fEpvH~GSAPdiA-----G 282 (349)
T 3blx_A 210 DVSSIIVDNASMQAVAKPHQFDVLVTPSMYGTILGNIGAALIGGPGLVAGANFGRDY--AVFEPGSRHVGLDIK-----G 282 (349)
T ss_dssp EEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHTCGGGCEEEEEESSC--EEECCTTTTSCC--C-----C
T ss_pred eEEEeeHHHHHHHHhhCcccccEEEECCcchHHHHHHHHhhcCCcccceEEEECCCc--eeEcCCCCCchhhhc-----C
Confidence 999999999999999999999 99999999999999999999999999999999874 8999999 9999996 6
Q ss_pred CCCCCCccccC
Q 019837 325 DQGSCTYYPWI 335 (335)
Q Consensus 325 k~~~aNP~a~I 335 (335)
||+ |||+|||
T Consensus 283 k~i-ANP~A~I 292 (349)
T 3blx_A 283 QNV-ANPTAMI 292 (349)
T ss_dssp TTC-SCCHHHH
T ss_pred CCC-CCcHHHH
Confidence 675 9999986
No 28
>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, leucine biosynthesis; HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP: c.77.1.1
Probab=100.00 E-value=1.2e-92 Score=690.45 Aligned_cols=282 Identities=19% Similarity=0.198 Sum_probs=242.8
Q ss_pred ccEEEECCCCchHHHHHHHHHHHhcC----CCceEEEEEecchhhhhccCCcccHHHHHHHHhcCeeeecCCCCCCcchh
Q 019837 10 NPIVEMDGDEMTRVFWKSIKDKLIFP----FLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARV 85 (335)
Q Consensus 10 ~~I~vipGDGIGpEv~~~~~~~~~~~----~~~i~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~lkg~~~~p~~~~~ 85 (335)
++|+||||||||||||+++++++.+. +++|+|+++++|++++++||+++|++|+++|+++|++||||+++|.....
T Consensus 2 ~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~g~~lp~~tl~~~~~~da~l~Gavg~p~~~~~ 81 (358)
T 1a05_A 2 KKIAIFAGDGIGPEIVAAARQVLDAVDQAAHLGLRCTEGLVGGAALDASDDPLPAASLQLAMAADAVILGAVGGPRWDAY 81 (358)
T ss_dssp CEEEEEEESTTHHHHHHHHHHHHHHHHHHHTCCCEEEECCCHHHHHHHHSSSSCHHHHHHHHHCSEEEEEECCCGGGTTS
T ss_pred cEEEEECCCCcCHHHHHHHHHHHHHHHHhcCCceEEEEEeCCcHHHHhhCCcCCHHHHHHHHHCCEEEECCccCCCcccC
Confidence 68999999999999999999766543 68999999999999999999999999999999999999999999842110
Q ss_pred hHHHhhhcCCCcchhHhhhcCceEEeecccccCCCCCC--CC------CCCCEEEEeeccCccccccceeeeCCCceeee
Q 019837 86 KEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLI--PG------WTKPICIGRHAFGDQYRATDTVIQGPGKLKLV 157 (335)
Q Consensus 86 ~~~~l~~~~~s~~~~LRk~ldlyanvRPv~~~~~~~~~--~~------~~~divivREnteg~Y~g~e~~~~~~g~~~~~ 157 (335)
+. .+ ..+++ |++|||+||||||+||+ +.+|++. ++ .+.||+||||||||+|+|.++...
T Consensus 82 ~~-~~-~~e~~-ll~lRk~ldlyanvRP~--~~~pgl~~~splk~~~~~~vDivIvREnteg~Y~g~~~~~~-------- 148 (358)
T 1a05_A 82 PP-AK-RPEQG-LLRLRKGLDLYANLRPA--QIFPQLLDASPLRPELVRDVDILVVRELTGDIYFGQPRGLE-------- 148 (358)
T ss_dssp CG-GG-SHHHH-HHHHHHHHTCCEEEEEE--ECCTTSGGGCSBCHHHHTTCEEEEEEECSSSTTTCSSCEEE--------
T ss_pred Cc-cc-cchhh-HHHHHHHcCCEEEEEEE--EecCCccCCCCCccccCCCceEEEEEecCCCcccCCcCccc--------
Confidence 00 00 01223 78999999999999998 5667763 22 147999999999999999753210
Q ss_pred eecCCCCccchhhhccccCccceeeeeeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchhHHHHHHHHHHhhh
Q 019837 158 FVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANW 237 (335)
Q Consensus 158 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r~k~Vt~v~KaNVl~~~~g~f~~~~~eva~~eY 237 (335)
.. .+ ++.+..+++||++++|||+|+||+||++|+++||+|||+|||+ ++++|+++|+||| ++|
T Consensus 149 -~~-~~-------------~~~a~~~~~~T~~~~eRiar~AFe~A~~rrkkVt~v~KaNvlk-~~~lf~~~~~eva-~ey 211 (358)
T 1a05_A 149 -VI-DG-------------KRRGFNTMVYDEDEIRRIAHVAFRAAQGRRKQLCSVDKANVLE-TTRLWREVVTEVA-RDY 211 (358)
T ss_dssp -EE-TT-------------EEEEEEEEEEEHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCH-HHHHHHHHHHHHG-GGC
T ss_pred -cC-CC-------------CceEEEEEEEcHHHHHHHHHHHHHHHHhcCCeEEEEECCcccc-cchhHHHHHHHHH-HHC
Confidence 00 00 0124457899999999999999999999988999999999999 8999999999999 699
Q ss_pred hccccCCCceEeeeeHHHHHHHHHhCCCCc-EEEeCCchhhhHHhhhhhhcCccccccccccCCCCCceeeecCCCCccc
Q 019837 238 KSKFEAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTR 316 (335)
Q Consensus 238 ~~~~~~p~V~~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaA~l~GslGlapSanig~~~~~~~fEp~HGSAPd 316 (335)
|+|+++|+|||+|+||||++|++| ||||+|||||||||++|+++|||||+||+|+| ++ ++||||+||||||
T Consensus 212 ------pdI~~~~~~vD~~~mqlv~~P~~FDVivt~NlfGDIlSD~aa~l~GslGl~pSanig-~~-~~~fEpvHGSAPd 283 (358)
T 1a05_A 212 ------PDVRLSHMYVDNAAMQLIRAPAQFDVLLTGNMFGDILSDEASQLTGSIGMLPSASLG-EG-RAMYEPIHGSAPD 283 (358)
T ss_dssp ------TTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHTTSCGGGCEEEEEC-SS-CEEEEESSCCCGG
T ss_pred ------CCceEEeeeHHHHHHHHHhCCCcccEEEecCcccHhHHHHHHhhcCCccccceeeeC-CC-ceeeecCCCChhH
Confidence 999999999999999999999999 99999999999999999999999999999999 55 6999999999999
Q ss_pred ccccccCCCCCCCCccccC
Q 019837 317 HYRVHQKDDQGSCTYYPWI 335 (335)
Q Consensus 317 iagk~~aGk~~~aNP~a~I 335 (335)
|| ||++ |||+|||
T Consensus 284 iA-----Gk~i-ANP~A~I 296 (358)
T 1a05_A 284 IA-----GQDK-ANPLATI 296 (358)
T ss_dssp GT-----TTTC-SCCHHHH
T ss_pred hc-----CCCc-cCcHHHH
Confidence 97 6666 9999986
No 29
>4aty_A Terephthalate 1,2-CIS-dihydrodiol dehydrogenase; oxidoreductase; 1.85A {Burkholderia xenovorans LB400}
Probab=83.14 E-value=0.26 Score=47.37 Aligned_cols=129 Identities=12% Similarity=-0.015 Sum_probs=65.9
Q ss_pred eeeCHHHHHHHHHHHHHHHHhCC--C-CEEEEeCCCcccccchhH-HHHHHHHH--HhhhhccccCCCceEe-eeeHHHH
Q 019837 184 MYNTDESIRAFAEASMNTAYQKK--W-PLYLSTKNTILKKYDGRF-KDIFQEVY--EANWKSKFEAAGIWYE-HRLIDDM 256 (335)
Q Consensus 184 ~~~T~~~~eRiar~AFe~A~~r~--k-~Vt~v~KaNVl~~~~g~f-~~~~~eva--~~eY~~~~~~p~V~~~-~~~VDa~ 256 (335)
..+|.+.+.+.++...+.-++-+ + |+.+. ==|==..-.|+| +|.-+-+. -++-+ +.++.+. -.=.|.+
T Consensus 195 ~~It~~~I~~~i~~~~~~l~~fgi~~PrIaV~-GLNPHaGE~G~~G~EE~~iI~Pai~~l~----~~gi~v~GP~paDt~ 269 (349)
T 4aty_A 195 ARLDQRHVERAARAAVQALQLMGIAHPVVGLM-GINPHAGEGGLFGRDDIDITEPVARKLR----DDGMTVIGPQGADLL 269 (349)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHTC-CCCCEEEE-CSSGGGGTTTTTCSHHHHTHHHHHHHHH----HC-CCEEEEECHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHhcCCCCceEEE-ecCCCCCccccccchHHHHHHHHHHHHH----HCCCeEeCCCchhhh
Confidence 35788888888877766555443 2 33332 122211224556 33221110 01111 1344444 4556765
Q ss_pred HHHHHhCCCCc-EEEeCCchhhhHHhhhhhhcCccccccccccCCCCCc-eeeecCCCCcccccccccCCCCCCCCcccc
Q 019837 257 VAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKT-IEAEAAHGTVTRHYRVHQKDDQGSCTYYPW 334 (335)
Q Consensus 257 ~~~lv~~P~~F-Viv~~NlfGDILSDlaA~l~GslGlapSanig~~~~~-~~fEp~HGSAPdiagk~~aGk~~~aNP~a~ 334 (335)
. .+.+| ++|| ||= |++-.-.=-|++--+.|+- -|.+ ---=|-||||-||| |||+ |||.++
T Consensus 270 F-----~~~~~D~vla--MYH----DQgl~p~K~l~f~~~vnit-lGLp~iRtS~dHGta~dia-----gkg~-a~~~s~ 331 (349)
T 4aty_A 270 L-----TNPDIDVFVA--MYH----DQGHIPVKLRAGRHSAALS-IGAGVLFSSVGHGSGFDIA-----GTLL-ADPAPL 331 (349)
T ss_dssp T-----TCTTCSEEEE--SSH----HHHHHHHHHHHTTSEEEEE-ESSSSEEEECCSCCCTTST-----TTTC-CCCHHH
T ss_pred h-----ccCCCCEEEE--ccc----ccchHHHHhcccCCcEEEe-cCCCeeEeCCCCChhhhhc-----cCCC-CChHHH
Confidence 4 23578 7777 453 3442222234444556662 1112 23368899999997 5666 999876
Q ss_pred C
Q 019837 335 I 335 (335)
Q Consensus 335 I 335 (335)
+
T Consensus 332 ~ 332 (349)
T 4aty_A 332 L 332 (349)
T ss_dssp H
T ss_pred H
Confidence 3
No 30
>1yxo_A 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA0593,pyridoxine biosynthesis,oxidoreductase, structural GE PSI; 2.01A {Pseudomonas aeruginosa}
Probab=82.76 E-value=0.29 Score=46.79 Aligned_cols=133 Identities=14% Similarity=0.007 Sum_probs=75.9
Q ss_pred eeeCHHHHHHHHHHHHHHHHhC-C--CCEEEEeCCCcccccchhH-HHHHHHHHH--hhhhccccCCCceEe-eeeHHHH
Q 019837 184 MYNTDESIRAFAEASMNTAYQK-K--WPLYLSTKNTILKKYDGRF-KDIFQEVYE--ANWKSKFEAAGIWYE-HRLIDDM 256 (335)
Q Consensus 184 ~~~T~~~~eRiar~AFe~A~~r-~--k~Vt~v~KaNVl~~~~g~f-~~~~~eva~--~eY~~~~~~p~V~~~-~~~VDa~ 256 (335)
..+|.+.+.+.++...+--+++ + ++-..|-==|==..-.|+| +|..+.+.- ++.+ +.++.+. -.=.|.+
T Consensus 173 ~~it~e~i~~~i~~~~~~L~~~fgi~~PrIaV~GLNPHAGE~G~~G~EE~~iI~Pai~~~r----~~Gi~~~GP~paDT~ 248 (328)
T 1yxo_A 173 DAISDERLTRVARILHADLRDKFGIAHPRILVCGLNPHAGEGGHLGREEIEVIEPCLERLR----GEGLDLIGPLPADTL 248 (328)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGTTTTTCSHHHHTHHHHHHHHH----TTTCEEEEEECHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCCCCCCCCCHhHHHHHHHHHHHHH----HCCCceeCCCCchhh
Confidence 3589999999999888755542 3 2322232233222225666 333322210 1111 1356553 5667877
Q ss_pred HHHHHhCCCCc-EEEeCCchhhhHHhhhhhhcCccccccccccCCCCCc-eeeecCCCCcccccccccCCCCCCCCcccc
Q 019837 257 VAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKT-IEAEAAHGTVTRHYRVHQKDDQGSCTYYPW 334 (335)
Q Consensus 257 ~~~lv~~P~~F-Viv~~NlfGDILSDlaA~l~GslGlapSanig~~~~~-~~fEp~HGSAPdiagk~~aGk~~~aNP~a~ 334 (335)
..+-.+ ++| ++|| ||= |++-.-.=-+|+--+.|+- -+.+ ---=|-||||-||| |||+ |||.+|
T Consensus 249 F~~~~~--~~~D~vla--MYH----DQGlip~K~l~F~~gVNvT-lGLP~iRTSvDHGTAfDIA-----GkG~-A~~~Sl 313 (328)
T 1yxo_A 249 FTPKHL--EHCDAVLA--MYH----DQGLPVLKYKGFGAAVNVT-LGLPIIRTSVDHGTALDLA-----GSGR-IDSGSL 313 (328)
T ss_dssp TSHHHH--TTCSEEEE--SSH----HHHHHHHHHHHTTSCEEEE-ESSSSCEEEECSCCCGGGT-----TTCC-CCCHHH
T ss_pred cccccc--cCCCEEEE--ccc----ccccHhHhhcccCcceEEe-cCCCEEEecCCCCcccccc-----CCCC-CChHHH
Confidence 655544 578 6665 342 6665555566666777773 1111 23367899999997 5566 999876
Q ss_pred C
Q 019837 335 I 335 (335)
Q Consensus 335 I 335 (335)
+
T Consensus 314 ~ 314 (328)
T 1yxo_A 314 Q 314 (328)
T ss_dssp H
T ss_pred H
Confidence 3
No 31
>3lxy_A 4-hydroxythreonine-4-phosphate dehydrogenase; PDXA, NAD-DEPE dehydrogenase, metal-binding, NAD, NADP, oxidoreductase, PY biosynthesis; HET: SUC; 1.70A {Yersinia pestis} SCOP: c.77.1.3 PDB: 1ps6_A* 1ptm_A 1ps7_A 1r8k_A
Probab=82.47 E-value=0.31 Score=46.74 Aligned_cols=132 Identities=14% Similarity=0.027 Sum_probs=75.5
Q ss_pred eeeCHHHHHHHHHHHHHHHHhC-C---CCEEEEeCCCcccccchhH-HHHHHHHHH--hhhhccccCCCceEe-eeeHHH
Q 019837 184 MYNTDESIRAFAEASMNTAYQK-K---WPLYLSTKNTILKKYDGRF-KDIFQEVYE--ANWKSKFEAAGIWYE-HRLIDD 255 (335)
Q Consensus 184 ~~~T~~~~eRiar~AFe~A~~r-~---k~Vt~v~KaNVl~~~~g~f-~~~~~eva~--~eY~~~~~~p~V~~~-~~~VDa 255 (335)
..+|.+.+.+.++.+.+--+++ + -||-+.- =|==..-.|+| +|..+.+.. ++.+. -++.++ .+-.|.
T Consensus 178 ~~it~e~i~~~i~~~~~~l~~~fGi~~PrIAV~g-LNPHAGE~G~~G~EE~~iI~PAi~~lr~----~Gi~~~GP~paDt 252 (334)
T 3lxy_A 178 GAITQASLHEVITILDNDLKTKFGITQPQIYVCG-LNPHAGEGGHMGHEEIDTIIPALNTLRQ----QGINLIGPLPADT 252 (334)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHTSCCSSCCEEEEC-SSGGGGGGGTTCSHHHHTHHHHHHHHHH----TTCCEEEEECHHH
T ss_pred hhCCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEe-cCCCCCCCCCCCchhHHHHHHHHHHHHH----CCCceeCCCChHH
Confidence 3579999999999888766653 2 2455442 11111124445 222211110 01111 355554 667888
Q ss_pred HHHHHHhCCCCc-EEEeCCchhhhHHhhhhhhcCccccccccccCCCCCc-eeeecCCCCcccccccccCCCCCCCCccc
Q 019837 256 MVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKT-IEAEAAHGTVTRHYRVHQKDDQGSCTYYP 333 (335)
Q Consensus 256 ~~~~lv~~P~~F-Viv~~NlfGDILSDlaA~l~GslGlapSanig~~~~~-~~fEp~HGSAPdiagk~~aGk~~~aNP~a 333 (335)
+..+-.+ +.| ++||.+.+ ++-.-.=-|++--+.|+- -+.+ .---|-||||-||| |||+ |||.+
T Consensus 253 ~F~~~~~--~~~D~vlaMYHD------QGlip~K~l~F~~gVNvT-lGLP~iRTS~DHGTAfDIA-----GkG~-A~~~S 317 (334)
T 3lxy_A 253 LFQPKYL--QHADAVLAMYHD------QGLPVLKYQGFGRAVNIT-LGLPFIRTSVDHGTALELA-----ATGT-ADVGS 317 (334)
T ss_dssp HTSHHHH--TTCSEEEESSHH------HHHHHHHHHHTTCCEEEE-ESSSSCEEEESSCCCGGGT-----TTTC-SCCHH
T ss_pred hcChhhh--ccCCEEEEcccc------hhhHhHHhcccCccEEEe-cCCCeeeecCCCCcchhhc-----cCCC-CChHH
Confidence 7766555 688 88987764 544444445555666763 1111 23368899999997 5566 99987
Q ss_pred cC
Q 019837 334 WI 335 (335)
Q Consensus 334 ~I 335 (335)
|+
T Consensus 318 ~~ 319 (334)
T 3lxy_A 318 FI 319 (334)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 32
>2hi1_A 4-hydroxythreonine-4-phosphate dehydrogenase 2; pyridoxal phosphate biosynthesis, structural GENO PSI-2, protein structure initiative; 2.30A {Salmonella typhimurium}
Probab=82.09 E-value=0.3 Score=46.78 Aligned_cols=133 Identities=14% Similarity=0.032 Sum_probs=76.6
Q ss_pred eeeCHHHHHHHHHHHHHHHHhCC--CCEEEEeCCCcccccchhH-HHHHHHHHH--hhhhccccCCCceEe-eeeHHHHH
Q 019837 184 MYNTDESIRAFAEASMNTAYQKK--WPLYLSTKNTILKKYDGRF-KDIFQEVYE--ANWKSKFEAAGIWYE-HRLIDDMV 257 (335)
Q Consensus 184 ~~~T~~~~eRiar~AFe~A~~r~--k~Vt~v~KaNVl~~~~g~f-~~~~~eva~--~eY~~~~~~p~V~~~-~~~VDa~~ 257 (335)
..+|.+.+.+.+|...++-++-+ ++-..|-==|==..-.|+| +|..+.+.- ++.+ +-++.+. -.=.|.+.
T Consensus 180 ~~it~e~i~~~i~~~~~L~~~fgi~~PrIaV~GLNPHAGE~G~~G~EE~~iI~PAi~~~r----~~Gi~~~GP~paDT~F 255 (330)
T 2hi1_A 180 DTLSTARVETVIGIADTFLKRVGYVKPRIAVAGVNPHAGENGLFGDEETRILTPAITDAR----AKGMDVYGPCPPDTVF 255 (330)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHTTCSSCEEEEECSSGGGSSTTSCCHHHHHTHHHHHHHHH----TTTCEEEEEECHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCCCCCCCCCHhHHHHHHHHHHHHH----HCCCceeCCCCchhhc
Confidence 35899999999999998333223 3322232233222225666 443332211 1111 1356653 66778876
Q ss_pred HHHHhCCCCc-EEEeCCchhhhHHhhhhhhcCccccccccccCCCCCc-eeeecCCCCcccccccccCCCCCCCCccccC
Q 019837 258 AYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKT-IEAEAAHGTVTRHYRVHQKDDQGSCTYYPWI 335 (335)
Q Consensus 258 ~~lv~~P~~F-Viv~~NlfGDILSDlaA~l~GslGlapSanig~~~~~-~~fEp~HGSAPdiagk~~aGk~~~aNP~a~I 335 (335)
.+-.+ ++| ++|| ||= |++-.-.=-+|+--+.|+- -+.+ ---=|-||||-||| |||+ |||.+|+
T Consensus 256 ~~~~~--~~~D~vla--MYH----DQGlip~K~l~F~~gVNvT-lGLP~iRTSvDHGTAfDIA-----GkG~-A~~~Sl~ 320 (330)
T 2hi1_A 256 LQAYE--GQYDMVVA--MYH----DQGHIPLKLLGFYDGVNIT-AGLPFIRTSADHGTAFDIA-----WTGK-AKSESMA 320 (330)
T ss_dssp HHHHT--TSCSEEEE--SSH----HHHHHHHHHCC-CCSEEEE-ETSSSEEEEESCCCCTTTT-----TTTC-CCCHHHH
T ss_pred ccccc--ccCCEEEE--ccc----ccccHhHhhcccCcceEEe-cCCCEEEecCCCCcccccc-----CCCC-CChHHHH
Confidence 66544 688 6665 342 6766556666777777873 1112 23468899999997 5566 9998763
No 33
>3tsn_A 4-hydroxythreonine-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: UNL; 2.63A {Campylobacter jejuni subsp}
Probab=76.66 E-value=0.56 Score=45.45 Aligned_cols=70 Identities=13% Similarity=0.034 Sum_probs=40.1
Q ss_pred eeHHHHHHHHHhCCCCc-EEEeCCchhhhHHhhhhhhcCccccccccccCCCCCc-eeeecCCCCcccccccccCCCC-C
Q 019837 251 RLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKT-IEAEAAHGTVTRHYRVHQKDDQ-G 327 (335)
Q Consensus 251 ~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaA~l~GslGlapSanig~~~~~-~~fEp~HGSAPdiagk~~aGk~-~ 327 (335)
.=.|.+..+-.+ ++| .+|| || =|++-.-.=-+|+--+.|+- -+.+ .--=|-||||-||| ||| +
T Consensus 282 ~paDT~F~~~~~--~~~D~vlA--MY----HDQGliplK~l~F~~gVNvT-lGLP~IRTSvDHGTAfDIA-----GkG~~ 347 (367)
T 3tsn_A 282 LVADTAFTKTGL--KNCNRLVA--MY----HDLALAPLKALYFDKSINVS-LNLPIIRVSVDHGTAFDKA-----YKNAK 347 (367)
T ss_dssp BCHHHHTSHHHH--HHCCEEEE--SS----HHHHHHHHHHHCTTTCEEEE-ESSSSCEEECCCCSCTTSC-----SSCCC
T ss_pred cCchhhhccchh--cCCCEEEE--cc----ccCcchhhhhcccCccEEEe-cCCCeeeecCCCCcchhhc-----CCCCc
Confidence 445555433322 467 6665 34 34554444445555666763 1111 22357899999997 556 5
Q ss_pred CCCccccC
Q 019837 328 SCTYYPWI 335 (335)
Q Consensus 328 ~aNP~a~I 335 (335)
|||.+|+
T Consensus 348 -Ad~~Sl~ 354 (367)
T 3tsn_A 348 -INTKSYF 354 (367)
T ss_dssp -CCCHHHH
T ss_pred -CChHHHH
Confidence 9998763
No 34
>2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase; HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A* 2qfx_A* 2qfv_A*
Probab=70.54 E-value=0.73 Score=45.55 Aligned_cols=16 Identities=6% Similarity=-0.211 Sum_probs=14.9
Q ss_pred CCCEEEEeeccCcccc
Q 019837 127 TKPICIGRHAFGDQYR 142 (335)
Q Consensus 127 ~~divivREnteg~Y~ 142 (335)
..|++|+||||||+|+
T Consensus 156 ~~D~vivREnteg~Y~ 171 (427)
T 2qfy_A 156 ATDTLIPGPGSLELVY 171 (427)
T ss_dssp CEEEEECSSEEEEEEE
T ss_pred CeeEEEeccCccceee
Confidence 4799999999999998
No 35
>2b0t_A NADP isocitrate dehydrogenase; monomeric, IDH, oxidoreductase; 1.75A {Corynebacterium glutamicum} PDB: 3mbc_A*
Probab=55.11 E-value=93 Score=31.95 Aligned_cols=128 Identities=13% Similarity=0.112 Sum_probs=77.5
Q ss_pred eeeeeeeCHHHHHHHHHHHHHHHHhCCCCE-EEEeCCCcccccchhHHHHHHHHHHhhhhccccCCCceEeee-eHHHHH
Q 019837 180 VALSMYNTDESIRAFAEASMNTAYQKKWPL-YLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHR-LIDDMV 257 (335)
Q Consensus 180 ~~~~~~~T~~~~eRiar~AFe~A~~r~k~V-t~v~KaNVl~~~~g~f~~~~~eva~~eY~~~~~~p~V~~~~~-~VDa~~ 257 (335)
+|-.+..-..-++-+++.|.+.||..+.+. .-.|+ |- ..|- +....| +.|.......++.+.-+ -++++-
T Consensus 451 IwRmcq~KDapI~DWVkLAV~Rar~sg~pavFWLD~-~R--aHDa---~lI~kV--~~yL~~hdt~GLdi~Im~p~~A~~ 522 (738)
T 2b0t_A 451 IWRACQVKDAPIQDWVKLAVTRSRLSGMPAVFWLDP-ER--AHDR---NLASLV--EKYLADHDTEGLDIQILSPVEATQ 522 (738)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHHHHHCCCEEEECCT-TC--HHHH---HHHHHH--HHHHTTSCCTTCCEEEECHHHHHH
T ss_pred chhhhhccCchHHHHHHHHHHHHHhcCCCeEEeeCC-CC--ccHH---HHHHHH--HHHHHhcCCCCCceEeeCHHHHHH
Confidence 333344557789999999999999988664 44443 22 1243 334444 23432223345666655 466665
Q ss_pred HHHHh--CCCCcEEEeCCchhhhHHhhhhhh--cCc---cccccccccCCCCCceeeec-CCCCccccccc
Q 019837 258 AYALK--SEGGYVWACKNYDGDVQSDFLAQG--FGS---LGLMTSVLVCPDGKTIEAEA-AHGTVTRHYRV 320 (335)
Q Consensus 258 ~~lv~--~P~~FViv~~NlfGDILSDlaA~l--~Gs---lGlapSanig~~~~~~~fEp-~HGSAPdiagk 320 (335)
.-|=+ +=+.-+=||-|..=|.|+||.--| --| |-+.|=.| .| +|||. ..||||.+.-|
T Consensus 523 ~slerir~G~dTISVTGNVLRDYLTDLFPIlELGTSAKMLSIVPLm~---GG--GLfETGAGGSAPKHVqQ 588 (738)
T 2b0t_A 523 LSIDRIRRGEDTISVTGNVLRDYNTDLFPILELGTSAKMLSVVPLMA---GG--GLFETGAGGSAPKHVQQ 588 (738)
T ss_dssp HHHHHHHTTCCCEEEECHHHHHHHHHHHHHHHHSCSSSCEEEEEBTT---SC--EEEECCSSCCCHHHHHH
T ss_pred HHHHHHHcCCCeEEeechhhhhhccccchhhhhccchhHhhhccccc---CC--ccccCCCCcCchHHHHH
Confidence 54433 322338899999999999998743 222 22223332 22 79998 67899998744
No 36
>1itw_A Isocitrate dehydrogenase; greece KEY motif, oxidoreductase; HET: ICT; 1.95A {Azotobacter vinelandii} SCOP: c.77.1.2 PDB: 1j1w_A*
Probab=54.85 E-value=94 Score=31.95 Aligned_cols=128 Identities=14% Similarity=0.153 Sum_probs=77.6
Q ss_pred eeeeeeeCHHHHHHHHHHHHHHHHhCCCCE-EEEeCCCcccccchhHHHHHHHHHHhhhhccccCCCceEeee-eHHHHH
Q 019837 180 VALSMYNTDESIRAFAEASMNTAYQKKWPL-YLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHR-LIDDMV 257 (335)
Q Consensus 180 ~~~~~~~T~~~~eRiar~AFe~A~~r~k~V-t~v~KaNVl~~~~g~f~~~~~eva~~eY~~~~~~p~V~~~~~-~VDa~~ 257 (335)
+|-.+..-..-++-+++.|.+.||..+.+. .-.|+ |- ..|- +....| +.|.......++.+.-+ -++++-
T Consensus 455 IwRmcq~KDapI~DWVkLAV~Rar~sg~pavFWLD~-~R--aHDa---~lI~kV--~~yL~~hdt~GLdi~Im~p~~A~~ 526 (741)
T 1itw_A 455 IWRMCQAKDAPIQDWVKLAVNRARATNTPAVFWLDP-AR--AHDA---QVIAKV--ERYLKDYDTSGLDIRILSPVEATR 526 (741)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHHHHHTCCEEEECCT-TS--HHHH---HHHHHH--HHHHTTSCCTTCCEEEECHHHHHH
T ss_pred chhhhhccCchHHHHHHHHHHHHHhcCCCeEEeeCC-CC--ccHH---HHHHHH--HHHHHhcCCCCCceEeeCHHHHHH
Confidence 333344557789999999999999988664 44443 22 1243 334444 23432223345666655 466665
Q ss_pred HHHHh--CCCCcEEEeCCchhhhHHhhhhhh--cCc---cccccccccCCCCCceeeec-CCCCccccccc
Q 019837 258 AYALK--SEGGYVWACKNYDGDVQSDFLAQG--FGS---LGLMTSVLVCPDGKTIEAEA-AHGTVTRHYRV 320 (335)
Q Consensus 258 ~~lv~--~P~~FViv~~NlfGDILSDlaA~l--~Gs---lGlapSanig~~~~~~~fEp-~HGSAPdiagk 320 (335)
.-|=+ +=+.-+=||-|..=|.|+||.--| --| |-+.|=.| .| +|||. ..||||.+.-|
T Consensus 527 ~sleRir~G~dTISVTGNVLRDYLTDLFPIlELGTSAKMLSIVPLm~---GG--GLfETGAGGSAPKHVqQ 592 (741)
T 1itw_A 527 FSLARIREGKDTISVTGNVLRDYLTDLFPIMELGTSAKMLSIVPLMS---GG--GLFETGAGGSAPKHVQQ 592 (741)
T ss_dssp HHHHHHHTTCCCEEEECHHHHHHHHHHHHHHHHSCSSSSEEEEEBTT---SC--EEEESCSSCCCHHHHHH
T ss_pred HHHHHHHcCCCeEEeechhhhhhccccchhhhhccchhHhhhccccc---CC--ccccCCCCcCchHHHHH
Confidence 54433 322238899999999999998743 222 22223332 22 79998 67899998744
No 37
>1yxo_A 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA0593,pyridoxine biosynthesis,oxidoreductase, structural GE PSI; 2.01A {Pseudomonas aeruginosa}
Probab=49.17 E-value=9.9 Score=36.19 Aligned_cols=22 Identities=5% Similarity=0.019 Sum_probs=17.5
Q ss_pred ccccEEEECCC--CchHHHHHHHH
Q 019837 8 VANPIVEMDGD--EMTRVFWKSIK 29 (335)
Q Consensus 8 m~~~I~vipGD--GIGpEv~~~~~ 29 (335)
|+.+|++-.|| ||||||+-.+.
T Consensus 1 m~~~iaIT~GDpaGIGpEii~ka~ 24 (328)
T 1yxo_A 1 MSLRFALTPGEPAGIGPDLCLLLA 24 (328)
T ss_dssp CCCCEEEECCSTTSSHHHHHHHHT
T ss_pred CCCEEEEcCCCCcchhHHHHHHHh
Confidence 44569999999 99999876553
No 38
>3lxy_A 4-hydroxythreonine-4-phosphate dehydrogenase; PDXA, NAD-DEPE dehydrogenase, metal-binding, NAD, NADP, oxidoreductase, PY biosynthesis; HET: SUC; 1.70A {Yersinia pestis} SCOP: c.77.1.3 PDB: 1ps6_A* 1ptm_A 1ps7_A 1r8k_A
Probab=48.37 E-value=9.1 Score=36.52 Aligned_cols=25 Identities=16% Similarity=0.209 Sum_probs=18.1
Q ss_pred CCccccccccEEEECCC--CchHHHHHHH
Q 019837 2 AFQKIKVANPIVEMDGD--EMTRVFWKSI 28 (335)
Q Consensus 2 ~~~~~~m~~~I~vipGD--GIGpEv~~~~ 28 (335)
+|++.| .+|++-.|| |||||++-.+
T Consensus 3 ~m~~~~--~~iaiT~GDpaGIGpEiilka 29 (334)
T 3lxy_A 3 AMHNHN--NRLVITPGEPAGVGPDLAITL 29 (334)
T ss_dssp -CCCCC--SEEEEECCCTTSSHHHHHHHH
T ss_pred ccccCC--CEEEEeCCCCccchHHHHHHh
Confidence 455532 589999999 9999987543
No 39
>2hi1_A 4-hydroxythreonine-4-phosphate dehydrogenase 2; pyridoxal phosphate biosynthesis, structural GENO PSI-2, protein structure initiative; 2.30A {Salmonella typhimurium}
Probab=47.03 E-value=12 Score=35.72 Aligned_cols=19 Identities=11% Similarity=0.017 Sum_probs=16.1
Q ss_pred cEEEECCC--CchHHHHHHHH
Q 019837 11 PIVEMDGD--EMTRVFWKSIK 29 (335)
Q Consensus 11 ~I~vipGD--GIGpEv~~~~~ 29 (335)
+|++-.|| ||||||+-.+.
T Consensus 8 ~iaIT~GDpaGIGpEii~ka~ 28 (330)
T 2hi1_A 8 TVAITMGDPAGIGPEIIVKAL 28 (330)
T ss_dssp CEEEECCCTTTTHHHHHHHHH
T ss_pred CEEEcCCCCcchhHHHHHHHH
Confidence 49999999 99999877554
No 40
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=33.03 E-value=1.2e+02 Score=25.98 Aligned_cols=82 Identities=16% Similarity=0.231 Sum_probs=47.5
Q ss_pred ccccEEEECCC----CchHHHHHHHHHHHhcCCCceEEEEEecchh-hh--hccCCcccHHH---HHHHHhcCeeeecCC
Q 019837 8 VANPIVEMDGD----EMTRVFWKSIKDKLIFPFLELDIKYFDLGLP-NR--DATDDKVTVES---AEATLKYNVAIKCAT 77 (335)
Q Consensus 8 m~~~I~vipGD----GIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~-~~--~~~G~~lp~~t---l~~~~~~da~lkg~~ 77 (335)
|.++|++|-|- -.+..+.+.+.+ +...+ ++++.+++..= .| +.. ...|+++ .+.++++|+++.+
T Consensus 1 M~k~I~vi~GS~R~~S~~~~la~~~~~-~~~~~--~~~~~idl~dLP~~~~d~~-~~~p~~~~~l~~~i~~aD~~ii~-- 74 (190)
T 3u7r_A 1 MVKTVAVMVGSLRKDSLNHKLMKVLQK-LAEGR--LEFHLLHIGDLPHYNDDLW-ADAPESVLRLKDRIEHSDAVLAI-- 74 (190)
T ss_dssp -CEEEEEEESCCSTTCHHHHHHHHHHH-HHTTT--EEEEECCGGGSCCCCGGGG-GGCCHHHHHHHHHHHTSSEEEEE--
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHH-hccCC--CEEEEEecccCCCCCCCcc-cCCCHHHHHHHHHHHhCCcEEEe--
Confidence 67899999884 566777776653 44444 55555555320 01 111 1245544 3678899998865
Q ss_pred CCCCcchhhHHHhhhcCCCcchhHhhhcCc
Q 019837 78 ITPDEARVKEFVLKQMWKSPNGTIRNILNG 107 (335)
Q Consensus 78 ~~p~~~~~~~~~l~~~~~s~~~~LRk~ldl 107 (335)
+|... .|.-..|...||.
T Consensus 75 -tPeYn-----------~s~pg~LKn~iDw 92 (190)
T 3u7r_A 75 -TPEYN-----------RSYPGMIKNAIDW 92 (190)
T ss_dssp -CCCBT-----------TBCCHHHHHHHHH
T ss_pred -chhhc-----------ccCCHHHHHHHHH
Confidence 45321 2444678888885
No 41
>4aty_A Terephthalate 1,2-CIS-dihydrodiol dehydrogenase; oxidoreductase; 1.85A {Burkholderia xenovorans LB400}
Probab=30.63 E-value=29 Score=32.99 Aligned_cols=20 Identities=10% Similarity=-0.039 Sum_probs=16.9
Q ss_pred ccEEEECCC--CchHHHHHHHH
Q 019837 10 NPIVEMDGD--EMTRVFWKSIK 29 (335)
Q Consensus 10 ~~I~vipGD--GIGpEv~~~~~ 29 (335)
.+|++-.|| ||||||+=.++
T Consensus 9 ~kIaIT~GDPaGIGpEIilKa~ 30 (349)
T 4aty_A 9 MTVALAIGDPNGIGPEIAVKAA 30 (349)
T ss_dssp CCEEEECCCTTSSHHHHHHHHH
T ss_pred CeEEEECCCcchhHHHHHHHHH
Confidence 379999999 99999986655
No 42
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=30.49 E-value=34 Score=26.54 Aligned_cols=27 Identities=15% Similarity=0.047 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeC
Q 019837 188 DESIRAFAEASMNTAYQKKWPLYLSTK 214 (335)
Q Consensus 188 ~~~~eRiar~AFe~A~~r~k~Vt~v~K 214 (335)
...+++.+++|.++|++.+.+|+++|=
T Consensus 15 s~~s~~al~~A~~la~~~~a~l~ll~v 41 (146)
T 3s3t_A 15 SDAAQAAFTEAVNIAQRHQANLTALYV 41 (146)
T ss_dssp SHHHHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHhcCCEEEEEEE
Confidence 356899999999999988877777653
No 43
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=29.37 E-value=37 Score=26.29 Aligned_cols=26 Identities=12% Similarity=0.014 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeC
Q 019837 189 ESIRAFAEASMNTAYQKKWPLYLSTK 214 (335)
Q Consensus 189 ~~~eRiar~AFe~A~~r~k~Vt~v~K 214 (335)
+.+++.+++|.++|++.+.+|+++|=
T Consensus 13 ~~s~~al~~A~~la~~~~a~l~ll~v 38 (147)
T 3hgm_A 13 KGAVKALEKGVGLQQLTGAELYILCV 38 (147)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEEE
Confidence 56889999999999988888888773
No 44
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=28.48 E-value=46 Score=26.27 Aligned_cols=27 Identities=15% Similarity=0.037 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeC
Q 019837 188 DESIRAFAEASMNTAYQKKWPLYLSTK 214 (335)
Q Consensus 188 ~~~~eRiar~AFe~A~~r~k~Vt~v~K 214 (335)
...+++.+++|.++|+..+.+|+++|=
T Consensus 27 s~~s~~al~~a~~la~~~~a~l~ll~v 53 (156)
T 3fg9_A 27 NTSSERAFRYATTLAHDYDVPLGICSV 53 (156)
T ss_dssp CHHHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred CHHHHHHHHHHHHHHHhcCCEEEEEEE
Confidence 467899999999999998888887763
No 45
>3tsn_A 4-hydroxythreonine-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: UNL; 2.63A {Campylobacter jejuni subsp}
Probab=27.48 E-value=45 Score=32.13 Aligned_cols=20 Identities=10% Similarity=0.023 Sum_probs=16.4
Q ss_pred ccEEEECCC--CchHHHHHHHH
Q 019837 10 NPIVEMDGD--EMTRVFWKSIK 29 (335)
Q Consensus 10 ~~I~vipGD--GIGpEv~~~~~ 29 (335)
.+|++-.|| ||||||+-.+.
T Consensus 5 ~~iaIT~GDpaGIGpEI~~ka~ 26 (367)
T 3tsn_A 5 KKLAISIGDINSIGLEILVRSH 26 (367)
T ss_dssp CEEEEECCCTTTTHHHHHHHHH
T ss_pred CEEEEeCCCCccchHHHHHHhh
Confidence 479999999 99999976543
No 46
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=26.98 E-value=50 Score=26.48 Aligned_cols=26 Identities=12% Similarity=0.206 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEe
Q 019837 188 DESIRAFAEASMNTAYQKKWPLYLST 213 (335)
Q Consensus 188 ~~~~eRiar~AFe~A~~r~k~Vt~v~ 213 (335)
...+++.+++|+++|+..+.+|+++|
T Consensus 35 s~~s~~al~~A~~la~~~~a~l~llh 60 (155)
T 3dlo_A 35 SDRAERVLRFAAEEARLRGVPVYVVH 60 (155)
T ss_dssp SHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CHHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 36789999999999999888888876
No 47
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=25.68 E-value=47 Score=25.57 Aligned_cols=25 Identities=24% Similarity=0.110 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHhCCCCEEEEe
Q 019837 189 ESIRAFAEASMNTAYQKKWPLYLST 213 (335)
Q Consensus 189 ~~~eRiar~AFe~A~~r~k~Vt~v~ 213 (335)
..+++.+++|.++|+..+.+|+++|
T Consensus 13 ~~s~~al~~a~~la~~~~a~l~ll~ 37 (137)
T 2z08_A 13 EHARRAAEVAKAEAEAHGARLIVVH 37 (137)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHHHHHHhhcCCEEEEEE
Confidence 5678899999999998888888776
No 48
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=23.76 E-value=47 Score=25.90 Aligned_cols=25 Identities=20% Similarity=-0.037 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHhCCCCEEEEe
Q 019837 189 ESIRAFAEASMNTAYQKKWPLYLST 213 (335)
Q Consensus 189 ~~~eRiar~AFe~A~~r~k~Vt~v~ 213 (335)
..+++.+++|+++|+..+.+|+++|
T Consensus 17 ~~s~~al~~a~~la~~~~a~l~ll~ 41 (150)
T 3tnj_A 17 SEDSQVVQKVRNLASQIGARLSLIH 41 (150)
T ss_dssp TTHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHHHHHHhhcCCEEEEEE
Confidence 4588999999999999888877776
No 49
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=23.11 E-value=52 Score=25.20 Aligned_cols=27 Identities=15% Similarity=0.057 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHH-HhCCCCEEEEeCC
Q 019837 189 ESIRAFAEASMNTA-YQKKWPLYLSTKN 215 (335)
Q Consensus 189 ~~~eRiar~AFe~A-~~r~k~Vt~v~Ka 215 (335)
+.+++.+++|.++| ++.+.+|+++|=.
T Consensus 12 ~~s~~al~~a~~la~~~~~a~l~ll~v~ 39 (138)
T 3idf_A 12 EACERAAQYILDMFGKDADCTLTLIHVK 39 (138)
T ss_dssp HHHHHHHHHHHHHHTTCTTEEEEEEEEE
T ss_pred HHHHHHHHHHHHHhccCCCCEEEEEEEe
Confidence 56889999999999 7777788887733
No 50
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=21.06 E-value=58 Score=25.04 Aligned_cols=25 Identities=12% Similarity=0.081 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHhCCCCEEEEe
Q 019837 189 ESIRAFAEASMNTAYQKKWPLYLST 213 (335)
Q Consensus 189 ~~~eRiar~AFe~A~~r~k~Vt~v~ 213 (335)
..+++.+++|.++|+..+.+|+++|
T Consensus 13 ~~s~~al~~a~~la~~~~a~l~ll~ 37 (141)
T 1jmv_A 13 EESPILLKKAVGIAKRHDAKLSIIH 37 (141)
T ss_dssp TTHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred hhhHHHHHHHHHHHHhcCCEEEEEE
Confidence 3467899999999998887887776
No 51
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=20.97 E-value=50 Score=26.48 Aligned_cols=25 Identities=12% Similarity=-0.099 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHhCCCCEEEEe
Q 019837 189 ESIRAFAEASMNTAYQKKWPLYLST 213 (335)
Q Consensus 189 ~~~eRiar~AFe~A~~r~k~Vt~v~ 213 (335)
..+++.+++|.++|++.+.+|+++|
T Consensus 16 ~~s~~al~~A~~la~~~~a~l~ll~ 40 (170)
T 2dum_A 16 EGAYRAVEVFEKRNKMEVGEVILLH 40 (170)
T ss_dssp HHHHHHHHHHHHHCCSCCSEEEEEE
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 4588999999999998887877776
No 52
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=20.20 E-value=44 Score=26.51 Aligned_cols=25 Identities=12% Similarity=-0.094 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHhCCCCEEEEe
Q 019837 189 ESIRAFAEASMNTAYQKKWPLYLST 213 (335)
Q Consensus 189 ~~~eRiar~AFe~A~~r~k~Vt~v~ 213 (335)
..+++.+++|+++|+..+.+|+++|
T Consensus 16 ~~s~~al~~a~~la~~~~a~l~ll~ 40 (162)
T 1mjh_A 16 ETAEIALKHVKAFKTLKAEEVILLH 40 (162)
T ss_dssp HHHHHHHHHHHHTCCSSCCEEEEEE
T ss_pred HHHHHHHHHHHHHHhhcCCeEEEEE
Confidence 4588899999999988777777766
Done!