Query 019839
Match_columns 335
No_of_seqs 373 out of 2050
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 04:57:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019839.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019839hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10294 Methyltransf_16: Puta 100.0 1.1E-29 2.4E-34 221.7 12.2 155 79-265 4-163 (173)
2 KOG3201 Uncharacterized conser 99.7 1.1E-18 2.4E-23 146.6 5.9 148 93-284 4-155 (201)
3 KOG2793 Putative N2,N2-dimethy 99.7 1.8E-17 3.9E-22 150.8 11.7 144 92-263 50-204 (248)
4 COG3897 Predicted methyltransf 99.7 1.7E-17 3.8E-22 143.8 8.2 137 92-270 54-191 (218)
5 COG2227 UbiG 2-polyprenyl-3-me 99.5 1.1E-13 2.4E-18 124.5 9.2 108 119-263 58-166 (243)
6 PF05175 MTS: Methyltransferas 99.5 1.5E-12 3.2E-17 113.2 14.4 111 100-246 18-135 (170)
7 PF12847 Methyltransf_18: Meth 99.4 8E-13 1.7E-17 105.9 10.4 101 120-247 1-107 (112)
8 PF06325 PrmA: Ribosomal prote 99.4 3.2E-12 7E-17 120.2 14.3 126 77-246 128-254 (295)
9 KOG1270 Methyltransferases [Co 99.4 7.3E-13 1.6E-17 120.1 7.9 113 118-262 87-199 (282)
10 TIGR00537 hemK_rel_arch HemK-r 99.4 1.9E-11 4.1E-16 106.9 16.7 109 102-248 8-137 (179)
11 COG2264 PrmA Ribosomal protein 99.4 4.8E-12 1E-16 118.3 13.1 131 77-248 129-260 (300)
12 PLN02396 hexaprenyldihydroxybe 99.4 5.5E-12 1.2E-16 120.2 12.8 101 119-246 130-230 (322)
13 PRK11207 tellurite resistance 99.4 1.2E-11 2.7E-16 110.0 13.8 102 118-248 28-131 (197)
14 PRK13168 rumA 23S rRNA m(5)U19 99.3 2.2E-11 4.7E-16 121.4 15.6 159 97-319 276-436 (443)
15 COG4123 Predicted O-methyltran 99.3 1.1E-11 2.3E-16 113.1 11.0 124 93-248 24-167 (248)
16 PF13847 Methyltransf_31: Meth 99.3 2E-11 4.3E-16 103.8 11.6 100 120-246 3-105 (152)
17 TIGR00477 tehB tellurite resis 99.3 4.4E-11 9.5E-16 106.3 13.1 100 119-248 29-130 (195)
18 PRK11036 putative S-adenosyl-L 99.3 2.6E-11 5.5E-16 112.1 10.5 103 119-247 43-145 (255)
19 PLN02244 tocopherol O-methyltr 99.3 1.1E-10 2.4E-15 112.4 15.1 103 119-248 117-220 (340)
20 TIGR00406 prmA ribosomal prote 99.3 3.1E-10 6.7E-15 106.9 17.3 126 79-246 128-254 (288)
21 PF08241 Methyltransf_11: Meth 99.2 4.4E-11 9.5E-16 92.1 9.0 92 125-247 1-93 (95)
22 PRK14968 putative methyltransf 99.2 1.9E-10 4E-15 100.6 13.3 118 97-248 7-145 (188)
23 TIGR00452 methyltransferase, p 99.2 1.8E-10 4E-15 109.4 14.2 119 98-248 103-222 (314)
24 PRK12335 tellurite resistance 99.2 1.3E-10 2.9E-15 109.3 12.3 99 119-247 119-219 (287)
25 TIGR00138 gidB 16S rRNA methyl 99.2 2.3E-10 5E-15 100.6 12.9 96 119-247 41-138 (181)
26 PRK15068 tRNA mo(5)U34 methylt 99.2 3.1E-10 6.6E-15 108.5 14.4 120 97-248 103-223 (322)
27 PRK00107 gidB 16S rRNA methylt 99.2 3.9E-10 8.4E-15 99.6 13.4 95 120-247 45-141 (187)
28 PRK15001 SAM-dependent 23S rib 99.2 4.3E-10 9.3E-15 109.3 14.9 100 121-246 229-335 (378)
29 PRK00517 prmA ribosomal protei 99.2 1.1E-09 2.4E-14 101.0 16.8 123 77-247 86-209 (250)
30 PRK14967 putative methyltransf 99.2 4.6E-10 9.9E-15 101.7 13.9 113 101-247 21-155 (223)
31 PLN02585 magnesium protoporphy 99.2 1E-09 2.2E-14 104.5 16.7 97 118-240 142-240 (315)
32 TIGR02085 meth_trns_rumB 23S r 99.2 2.7E-10 5.9E-15 111.1 12.6 136 119-319 232-368 (374)
33 PRK03522 rumB 23S rRNA methylu 99.2 2.3E-10 5.1E-15 109.0 11.8 104 119-259 172-275 (315)
34 KOG2920 Predicted methyltransf 99.2 1.2E-11 2.6E-16 113.8 2.6 166 88-283 84-253 (282)
35 PF01209 Ubie_methyltran: ubiE 99.2 4.9E-10 1.1E-14 102.4 12.8 116 96-248 32-150 (233)
36 PF13489 Methyltransf_23: Meth 99.1 2E-10 4.2E-15 97.5 9.2 90 118-246 20-110 (161)
37 TIGR00479 rumA 23S rRNA (uraci 99.1 4.1E-10 8.9E-15 111.8 13.0 153 103-318 278-431 (431)
38 PTZ00098 phosphoethanolamine N 99.1 5.4E-10 1.2E-14 103.9 12.8 119 97-248 32-153 (263)
39 COG2230 Cfa Cyclopropane fatty 99.1 8.8E-10 1.9E-14 102.4 13.8 116 100-248 55-173 (283)
40 PLN02336 phosphoethanolamine N 99.1 7.7E-10 1.7E-14 111.1 14.2 101 119-248 265-366 (475)
41 PF08242 Methyltransf_12: Meth 99.1 1.7E-11 3.7E-16 96.4 1.4 95 125-245 1-97 (99)
42 PRK08287 cobalt-precorrin-6Y C 99.1 9.8E-09 2.1E-13 90.4 19.2 96 119-247 30-127 (187)
43 PRK10258 biotin biosynthesis p 99.1 5.8E-10 1.3E-14 102.6 11.4 96 119-247 41-136 (251)
44 COG2813 RsmC 16S RNA G1207 met 99.1 9.9E-10 2.1E-14 102.4 12.8 110 106-248 147-263 (300)
45 PRK01683 trans-aconitate 2-met 99.1 1.3E-09 2.8E-14 100.6 13.6 97 118-248 29-127 (258)
46 PF02353 CMAS: Mycolic acid cy 99.1 1.2E-09 2.7E-14 101.9 13.6 116 100-248 45-163 (273)
47 PRK05134 bifunctional 3-demeth 99.1 1.1E-09 2.4E-14 99.4 13.0 110 106-246 37-146 (233)
48 PRK11873 arsM arsenite S-adeno 99.1 1E-09 2.2E-14 102.2 12.8 103 118-248 75-180 (272)
49 TIGR02752 MenG_heptapren 2-hep 99.1 1.1E-09 2.4E-14 99.3 12.5 101 119-247 44-147 (231)
50 PLN02233 ubiquinone biosynthes 99.1 1E-09 2.3E-14 101.9 12.6 105 119-248 72-179 (261)
51 TIGR02469 CbiT precorrin-6Y C5 99.1 4E-09 8.6E-14 85.5 14.4 100 118-247 17-118 (124)
52 smart00828 PKS_MT Methyltransf 99.1 9E-10 2E-14 99.4 11.6 99 122-248 1-101 (224)
53 PRK05031 tRNA (uracil-5-)-meth 99.1 1.4E-09 3E-14 105.6 13.1 74 102-184 192-265 (362)
54 PRK09489 rsmC 16S ribosomal RN 99.1 1.6E-09 3.5E-14 104.3 13.0 97 121-248 197-300 (342)
55 TIGR02143 trmA_only tRNA (urac 99.1 1.5E-09 3.3E-14 105.0 12.9 74 102-184 183-256 (353)
56 PF13659 Methyltransf_26: Meth 99.1 4E-10 8.7E-15 91.0 7.3 102 121-247 1-111 (117)
57 PRK14103 trans-aconitate 2-met 99.1 1.7E-09 3.6E-14 99.9 12.0 95 118-248 27-123 (255)
58 PRK08317 hypothetical protein; 99.1 3.7E-09 7.9E-14 95.4 13.9 103 117-248 16-121 (241)
59 PF03848 TehB: Tellurite resis 99.1 2.3E-09 5.1E-14 94.7 12.2 101 117-247 27-129 (192)
60 PRK15451 tRNA cmo(5)U34 methyl 99.1 6.9E-09 1.5E-13 95.5 15.9 100 119-247 55-160 (247)
61 COG2890 HemK Methylase of poly 99.0 2.2E-09 4.8E-14 100.6 12.8 75 102-185 96-172 (280)
62 PF13649 Methyltransf_25: Meth 99.0 7.4E-10 1.6E-14 87.6 8.1 93 124-245 1-101 (101)
63 PF05401 NodS: Nodulation prot 99.0 1.2E-09 2.5E-14 96.1 9.6 96 120-246 43-141 (201)
64 TIGR03587 Pse_Me-ase pseudamin 99.0 8.9E-09 1.9E-13 92.2 15.5 93 119-246 42-136 (204)
65 TIGR02021 BchM-ChlM magnesium 99.0 3.7E-09 8.1E-14 95.3 13.2 95 118-242 53-149 (219)
66 PLN02490 MPBQ/MSBQ methyltrans 99.0 4E-09 8.6E-14 101.2 13.6 98 120-248 113-212 (340)
67 PRK00216 ubiE ubiquinone/menaq 99.0 5.9E-09 1.3E-13 94.3 13.9 102 119-247 50-154 (239)
68 TIGR00080 pimt protein-L-isoas 99.0 6E-09 1.3E-13 93.9 13.8 108 104-248 64-174 (215)
69 TIGR00740 methyltransferase, p 99.0 6.3E-09 1.4E-13 95.1 13.7 100 119-247 52-157 (239)
70 PRK10909 rsmD 16S rRNA m(2)G96 99.0 4.9E-09 1.1E-13 93.5 11.8 110 119-263 52-164 (199)
71 PRK13944 protein-L-isoaspartat 99.0 1.1E-08 2.5E-13 91.5 13.7 107 105-247 60-169 (205)
72 COG2263 Predicted RNA methylas 99.0 3.7E-09 8.1E-14 92.0 9.9 63 117-185 42-105 (198)
73 TIGR02072 BioC biotin biosynth 99.0 7E-09 1.5E-13 93.7 12.2 97 119-247 33-131 (240)
74 TIGR01983 UbiG ubiquinone bios 99.0 7E-09 1.5E-13 93.5 11.9 118 102-246 26-144 (224)
75 PRK00377 cbiT cobalt-precorrin 99.0 1.1E-08 2.4E-13 91.0 12.9 103 117-248 37-142 (198)
76 TIGR03533 L3_gln_methyl protei 99.0 1.2E-08 2.7E-13 95.9 13.8 99 120-246 121-246 (284)
77 PRK07580 Mg-protoporphyrin IX 99.0 9.1E-09 2E-13 93.0 12.4 94 118-241 61-156 (230)
78 PRK13942 protein-L-isoaspartat 98.9 1.5E-08 3.3E-13 91.2 13.7 110 102-248 61-173 (212)
79 COG2265 TrmA SAM-dependent met 98.9 8.6E-09 1.9E-13 101.9 13.0 153 102-318 278-431 (432)
80 COG2226 UbiE Methylase involve 98.9 7.2E-09 1.6E-13 94.5 11.4 117 95-248 35-153 (238)
81 PRK00312 pcm protein-L-isoaspa 98.9 2.9E-08 6.2E-13 89.1 15.0 114 97-248 59-172 (212)
82 PRK14966 unknown domain/N5-glu 98.9 2E-08 4.3E-13 98.3 14.1 114 101-247 237-377 (423)
83 PRK11705 cyclopropane fatty ac 98.9 1.4E-08 3.1E-13 99.3 13.1 98 117-248 164-264 (383)
84 PRK11805 N5-glutamine S-adenos 98.9 2.5E-08 5.5E-13 94.8 14.1 97 122-246 135-258 (307)
85 TIGR00536 hemK_fam HemK family 98.9 2.3E-08 4.9E-13 94.0 13.6 97 122-246 116-239 (284)
86 PRK00121 trmB tRNA (guanine-N( 98.9 8E-09 1.7E-13 92.3 9.9 101 120-246 40-151 (202)
87 TIGR03534 RF_mod_PrmC protein- 98.9 3E-08 6.5E-13 90.7 13.9 116 98-246 69-212 (251)
88 PRK15128 23S rRNA m(5)C1962 me 98.9 2.8E-08 6E-13 97.6 14.4 105 119-245 219-333 (396)
89 PRK05785 hypothetical protein; 98.9 7.7E-09 1.7E-13 94.1 9.5 88 120-243 51-139 (226)
90 TIGR03704 PrmC_rel_meth putati 98.9 2.8E-08 6E-13 91.8 13.3 115 101-246 69-211 (251)
91 TIGR02716 C20_methyl_CrtF C-20 98.9 3E-08 6.4E-13 94.1 13.8 103 119-251 148-254 (306)
92 KOG1499 Protein arginine N-met 98.9 8.8E-09 1.9E-13 97.4 9.6 115 116-258 56-174 (346)
93 PF08003 Methyltransf_9: Prote 98.9 3.2E-08 7E-13 92.4 13.0 104 117-248 112-216 (315)
94 PRK04266 fibrillarin; Provisio 98.9 9.6E-08 2.1E-12 86.9 15.7 121 94-248 45-173 (226)
95 PRK11783 rlmL 23S rRNA m(2)G24 98.9 4E-08 8.7E-13 103.2 14.8 102 119-245 537-650 (702)
96 TIGR01934 MenG_MenH_UbiE ubiqu 98.8 6E-08 1.3E-12 86.7 13.8 99 119-247 38-139 (223)
97 KOG2497 Predicted methyltransf 98.8 4.5E-10 9.7E-15 103.5 -0.2 175 84-283 57-231 (262)
98 PF05958 tRNA_U5-meth_tr: tRNA 98.8 2.2E-08 4.8E-13 96.9 11.0 161 101-319 181-345 (352)
99 COG4976 Predicted methyltransf 98.8 1.8E-09 4E-14 96.3 3.0 139 102-287 111-253 (287)
100 PRK09328 N5-glutamine S-adenos 98.8 7.5E-08 1.6E-12 89.5 13.7 114 101-246 92-233 (275)
101 cd02440 AdoMet_MTases S-adenos 98.8 5.7E-08 1.2E-12 74.4 10.7 97 123-246 1-99 (107)
102 TIGR03840 TMPT_Se_Te thiopurin 98.8 8.5E-08 1.8E-12 86.5 13.4 121 101-247 19-148 (213)
103 PRK07402 precorrin-6B methylas 98.8 9.9E-08 2.1E-12 84.6 13.2 99 119-248 39-139 (196)
104 COG2242 CobL Precorrin-6B meth 98.8 4.4E-07 9.5E-12 79.3 16.3 100 117-248 31-132 (187)
105 COG2518 Pcm Protein-L-isoaspar 98.8 1.1E-07 2.5E-12 84.5 12.7 116 95-248 51-166 (209)
106 PRK04148 hypothetical protein; 98.8 4.3E-08 9.3E-13 81.6 9.2 67 104-185 3-70 (134)
107 PLN02336 phosphoethanolamine N 98.8 2.9E-07 6.3E-12 92.5 16.8 102 119-248 36-139 (475)
108 PLN03075 nicotianamine synthas 98.7 8.9E-08 1.9E-12 89.9 11.7 101 120-246 123-228 (296)
109 TIGR01177 conserved hypothetic 98.7 1.4E-07 3E-12 90.5 13.2 113 104-248 169-291 (329)
110 PRK06922 hypothetical protein; 98.7 8.6E-08 1.9E-12 98.1 12.3 104 118-248 416-534 (677)
111 TIGR00091 tRNA (guanine-N(7)-) 98.7 1.2E-07 2.7E-12 84.0 11.8 102 120-246 16-127 (194)
112 PRK06202 hypothetical protein; 98.7 5.3E-08 1.1E-12 88.6 9.6 93 119-242 59-159 (232)
113 PRK01544 bifunctional N5-gluta 98.7 1.4E-07 3E-12 95.6 13.5 99 120-246 138-264 (506)
114 PHA03411 putative methyltransf 98.7 2.9E-07 6.2E-12 85.5 14.2 103 120-263 64-188 (279)
115 TIGR00095 RNA methyltransferas 98.7 1.5E-07 3.2E-12 83.3 11.8 98 118-239 47-145 (189)
116 PRK13943 protein-L-isoaspartat 98.7 3.3E-07 7.2E-12 87.5 13.7 109 102-248 66-177 (322)
117 PRK13255 thiopurine S-methyltr 98.7 2.9E-07 6.2E-12 83.3 12.4 116 102-246 23-150 (218)
118 PLN02781 Probable caffeoyl-CoA 98.7 3.3E-07 7.2E-12 83.8 12.8 104 119-246 67-173 (234)
119 PTZ00146 fibrillarin; Provisio 98.7 3.9E-06 8.4E-11 78.7 19.6 125 94-247 105-233 (293)
120 smart00138 MeTrc Methyltransfe 98.6 1.1E-07 2.3E-12 88.6 9.1 104 120-246 99-237 (264)
121 PRK14904 16S rRNA methyltransf 98.6 3.1E-07 6.7E-12 91.7 12.8 117 96-247 232-373 (445)
122 KOG1500 Protein arginine N-met 98.6 3.3E-07 7.1E-12 86.1 10.7 103 116-248 173-279 (517)
123 TIGR00478 tly hemolysin TlyA f 98.6 1.6E-07 3.5E-12 85.4 8.3 112 97-248 55-168 (228)
124 PRK14902 16S rRNA methyltransf 98.6 4.6E-07 9.9E-12 90.4 12.3 102 119-247 249-375 (444)
125 PRK10901 16S rRNA methyltransf 98.6 1.1E-06 2.3E-11 87.4 14.1 102 119-247 243-368 (427)
126 smart00650 rADc Ribosomal RNA 98.6 9.8E-07 2.1E-11 76.4 12.1 61 118-185 11-71 (169)
127 PF07021 MetW: Methionine bios 98.6 4.4E-07 9.5E-12 79.7 9.7 89 119-240 12-101 (193)
128 KOG1271 Methyltransferases [Ge 98.5 4.3E-07 9.2E-12 78.7 9.3 120 101-247 47-177 (227)
129 PLN02672 methionine S-methyltr 98.5 4.2E-07 9.2E-12 98.2 11.4 84 100-185 100-196 (1082)
130 TIGR00446 nop2p NOL1/NOP2/sun 98.5 7.1E-07 1.5E-11 83.1 11.4 59 119-182 70-131 (264)
131 TIGR00563 rsmB ribosomal RNA s 98.5 1.4E-06 3.1E-11 86.5 13.9 121 101-259 226-370 (426)
132 PRK14901 16S rRNA methyltransf 98.5 8.6E-07 1.9E-11 88.3 12.1 106 118-247 250-380 (434)
133 TIGR02081 metW methionine bios 98.5 5.4E-07 1.2E-11 79.8 9.4 90 120-242 13-103 (194)
134 KOG4300 Predicted methyltransf 98.5 4.6E-07 1E-11 79.9 8.6 98 123-247 79-178 (252)
135 KOG3010 Methyltransferase [Gen 98.5 1.7E-07 3.8E-12 84.4 5.8 99 122-248 35-133 (261)
136 PRK11727 23S rRNA mA1618 methy 98.5 4.9E-07 1.1E-11 86.2 9.1 87 120-229 114-204 (321)
137 COG2519 GCD14 tRNA(1-methylade 98.5 2E-06 4.3E-11 78.4 12.6 104 117-258 91-197 (256)
138 PRK11088 rrmA 23S rRNA methylt 98.5 6.1E-07 1.3E-11 83.7 9.5 89 120-248 85-178 (272)
139 TIGR03438 probable methyltrans 98.5 1.2E-06 2.6E-11 83.0 11.5 105 120-246 63-172 (301)
140 KOG2904 Predicted methyltransf 98.5 1E-06 2.2E-11 80.8 10.2 78 99-181 128-207 (328)
141 PF01135 PCMT: Protein-L-isoas 98.5 1.3E-06 2.8E-11 78.5 10.8 110 101-248 57-169 (209)
142 PRK04457 spermidine synthase; 98.5 7.4E-07 1.6E-11 82.9 9.0 99 120-246 66-172 (262)
143 PRK11188 rrmJ 23S rRNA methylt 98.5 2.7E-06 5.8E-11 76.5 12.3 100 118-248 49-162 (209)
144 PRK14121 tRNA (guanine-N(7)-)- 98.4 2.8E-06 6.2E-11 82.7 13.3 102 119-246 121-230 (390)
145 PRK04338 N(2),N(2)-dimethylgua 98.4 1.2E-06 2.5E-11 85.8 10.6 98 121-257 58-157 (382)
146 PHA03412 putative methyltransf 98.4 1.6E-06 3.6E-11 78.8 10.7 92 120-245 49-157 (241)
147 PRK14903 16S rRNA methyltransf 98.4 3.9E-06 8.5E-11 83.4 13.7 108 119-259 236-368 (431)
148 PF05185 PRMT5: PRMT5 arginine 98.4 2.3E-06 4.9E-11 85.3 11.7 111 120-258 186-304 (448)
149 COG1092 Predicted SAM-dependen 98.4 8.5E-06 1.9E-10 79.5 14.6 105 119-245 216-330 (393)
150 KOG3191 Predicted N6-DNA-methy 98.4 4E-06 8.8E-11 72.6 10.9 126 101-263 24-173 (209)
151 PRK14896 ksgA 16S ribosomal RN 98.4 2.4E-06 5.1E-11 79.3 10.4 71 104-184 16-86 (258)
152 PF05219 DREV: DREV methyltran 98.4 5.3E-06 1.2E-10 76.0 12.1 93 118-248 92-185 (265)
153 PLN02476 O-methyltransferase 98.4 5.5E-06 1.2E-10 77.4 12.5 104 119-246 117-223 (278)
154 PF03602 Cons_hypoth95: Conser 98.4 4.9E-07 1.1E-11 79.6 5.0 102 119-244 41-146 (183)
155 COG4122 Predicted O-methyltran 98.3 4.2E-06 9E-11 75.5 10.7 99 119-245 58-160 (219)
156 PF02475 Met_10: Met-10+ like- 98.3 1E-06 2.2E-11 78.5 6.8 96 118-245 99-196 (200)
157 PTZ00338 dimethyladenosine tra 98.3 2.9E-06 6.3E-11 80.2 10.1 74 105-185 24-97 (294)
158 PRK00274 ksgA 16S ribosomal RN 98.3 2.7E-06 5.9E-11 79.5 9.2 70 105-185 30-99 (272)
159 PF01596 Methyltransf_3: O-met 98.3 5E-06 1.1E-10 74.5 10.5 103 119-245 44-149 (205)
160 COG4106 Tam Trans-aconitate me 98.3 2.7E-06 5.8E-11 75.7 8.4 96 117-246 27-124 (257)
161 PRK00811 spermidine synthase; 98.3 6.7E-06 1.4E-10 77.3 11.5 102 120-245 76-185 (283)
162 PF06080 DUF938: Protein of un 98.3 1.1E-05 2.3E-10 71.9 11.6 140 123-293 28-171 (204)
163 TIGR00438 rrmJ cell division p 98.3 7.1E-06 1.5E-10 72.2 10.3 101 117-248 29-143 (188)
164 PF00891 Methyltransf_2: O-met 98.2 1.2E-05 2.7E-10 73.4 11.8 93 120-250 100-198 (241)
165 TIGR00417 speE spermidine synt 98.2 1.1E-05 2.4E-10 75.2 11.5 103 120-246 72-181 (270)
166 KOG1540 Ubiquinone biosynthesi 98.2 2.6E-05 5.6E-10 71.1 13.2 121 93-247 82-210 (296)
167 PF08704 GCD14: tRNA methyltra 98.2 9.9E-06 2.1E-10 74.5 9.7 103 117-248 37-143 (247)
168 PF10672 Methyltrans_SAM: S-ad 98.2 6.4E-06 1.4E-10 77.3 8.5 104 119-245 122-232 (286)
169 TIGR00308 TRM1 tRNA(guanine-26 98.2 1E-05 2.3E-10 78.8 10.1 94 121-245 45-141 (374)
170 PRK13256 thiopurine S-methyltr 98.2 3.4E-05 7.4E-10 70.1 12.6 122 102-247 29-159 (226)
171 TIGR00755 ksgA dimethyladenosi 98.1 2.5E-05 5.4E-10 72.2 11.5 71 105-185 17-87 (253)
172 KOG3420 Predicted RNA methylas 98.1 4.6E-06 1E-10 69.7 5.9 50 117-166 45-95 (185)
173 KOG1541 Predicted protein carb 98.1 1.8E-05 3.9E-10 70.7 9.8 96 120-248 50-157 (270)
174 PLN02589 caffeoyl-CoA O-methyl 98.1 3.6E-05 7.8E-10 70.9 11.6 104 119-245 78-184 (247)
175 PRK01581 speE spermidine synth 98.1 1.7E-05 3.7E-10 76.5 9.6 102 119-245 149-262 (374)
176 PRK03612 spermidine synthase; 98.0 2.6E-05 5.6E-10 79.4 10.5 103 120-246 297-410 (521)
177 PF05724 TPMT: Thiopurine S-me 98.0 1.3E-05 2.8E-10 72.5 7.2 119 102-246 23-150 (218)
178 PLN02366 spermidine synthase 98.0 9.2E-05 2E-09 70.4 13.0 103 120-245 91-200 (308)
179 KOG2361 Predicted methyltransf 97.9 2.1E-05 4.5E-10 71.1 6.1 100 123-247 74-179 (264)
180 COG0742 N6-adenine-specific me 97.9 0.00011 2.3E-09 64.6 10.1 60 118-181 41-101 (187)
181 COG4076 Predicted RNA methylas 97.9 2.6E-05 5.7E-10 68.0 5.7 98 120-247 32-131 (252)
182 KOG2899 Predicted methyltransf 97.8 3.8E-05 8.2E-10 69.5 6.7 146 116-262 54-219 (288)
183 COG2520 Predicted methyltransf 97.8 0.0001 2.2E-09 70.6 9.7 96 119-245 187-283 (341)
184 KOG2187 tRNA uracil-5-methyltr 97.8 0.00012 2.6E-09 72.7 9.7 127 101-261 367-493 (534)
185 PF05971 Methyltransf_10: Prot 97.8 0.00029 6.2E-09 66.5 11.2 88 121-229 103-192 (299)
186 PF01861 DUF43: Protein of unk 97.7 0.0028 6E-08 57.8 15.9 130 94-262 22-153 (243)
187 PLN02823 spermine synthase 97.7 0.00029 6.3E-09 67.8 9.9 101 120-245 103-214 (336)
188 PF09445 Methyltransf_15: RNA 97.6 8.4E-05 1.8E-09 64.1 4.9 60 122-185 1-60 (163)
189 PF02527 GidB: rRNA small subu 97.6 0.0004 8.7E-09 61.2 8.9 90 123-245 51-142 (184)
190 TIGR01444 fkbM_fam methyltrans 97.6 0.00022 4.8E-09 59.4 7.0 58 123-185 1-60 (143)
191 COG0357 GidB Predicted S-adeno 97.5 0.00058 1.3E-08 61.5 8.9 95 121-248 68-165 (215)
192 KOG0820 Ribosomal RNA adenine 97.5 0.00072 1.6E-08 62.4 9.4 86 93-186 35-120 (315)
193 PRK00536 speE spermidine synth 97.4 0.0019 4E-08 60.1 11.2 94 120-245 72-165 (262)
194 KOG1501 Arginine N-methyltrans 97.3 0.00085 1.8E-08 65.5 7.5 110 123-258 69-182 (636)
195 PF03291 Pox_MCEL: mRNA cappin 97.2 0.0027 5.8E-08 61.1 10.9 128 99-246 44-181 (331)
196 PF00398 RrnaAD: Ribosomal RNA 97.2 0.0034 7.4E-08 58.3 11.3 74 102-185 15-88 (262)
197 PRK11933 yebU rRNA (cytosine-C 97.2 0.0025 5.4E-08 64.1 10.7 108 119-259 112-244 (470)
198 PF08123 DOT1: Histone methyla 97.2 0.0011 2.4E-08 59.4 7.2 108 117-245 39-152 (205)
199 COG0030 KsgA Dimethyladenosine 97.2 0.0026 5.6E-08 58.9 9.5 70 106-185 19-88 (259)
200 PF09243 Rsm22: Mitochondrial 97.2 0.0026 5.7E-08 59.6 9.7 96 117-241 30-128 (274)
201 PRK11783 rlmL 23S rRNA m(2)G24 97.1 0.0046 1E-07 65.3 12.5 76 103-185 175-295 (702)
202 PF01170 UPF0020: Putative RNA 97.1 0.0025 5.4E-08 55.8 8.9 100 117-243 25-143 (179)
203 COG1352 CheR Methylase of chem 97.1 0.0054 1.2E-07 57.2 11.3 120 102-245 78-235 (268)
204 PHA01634 hypothetical protein 97.1 0.0029 6.3E-08 52.0 7.9 51 117-167 25-76 (156)
205 PF01739 CheR: CheR methyltran 97.1 0.00076 1.6E-08 60.1 4.9 103 120-245 31-169 (196)
206 PRK10611 chemotaxis methyltran 97.0 0.0018 3.9E-08 61.0 7.3 103 121-245 116-256 (287)
207 PF05891 Methyltransf_PK: AdoM 97.0 0.0053 1.2E-07 55.2 9.8 135 119-285 54-191 (218)
208 PF02384 N6_Mtase: N-6 DNA Met 96.9 0.0052 1.1E-07 58.2 9.6 119 103-248 32-180 (311)
209 COG3963 Phospholipid N-methylt 96.9 0.0052 1.1E-07 53.0 8.4 121 93-245 25-150 (194)
210 COG2521 Predicted archaeal met 96.9 0.0013 2.8E-08 59.5 5.0 131 91-263 112-253 (287)
211 KOG1661 Protein-L-isoaspartate 96.9 0.0086 1.9E-07 53.4 9.9 71 94-165 57-131 (237)
212 KOG3987 Uncharacterized conser 96.9 0.00038 8.3E-09 61.7 1.4 94 120-250 112-205 (288)
213 PLN02232 ubiquinone biosynthes 96.8 0.0047 1E-07 53.0 7.6 78 146-248 1-78 (160)
214 PF02390 Methyltransf_4: Putat 96.8 0.0091 2E-07 53.1 9.6 99 122-245 19-127 (195)
215 PF13679 Methyltransf_32: Meth 96.8 0.0049 1.1E-07 51.7 7.0 48 119-166 24-77 (141)
216 COG1041 Predicted DNA modifica 96.7 0.012 2.5E-07 56.5 10.0 112 105-248 185-307 (347)
217 TIGR02987 met_A_Alw26 type II 96.7 0.0072 1.6E-07 61.7 9.1 47 120-166 31-87 (524)
218 PF01564 Spermine_synth: Sperm 96.7 0.011 2.3E-07 54.6 9.4 103 120-245 76-185 (246)
219 PRK11760 putative 23S rRNA C24 96.6 0.013 2.7E-07 56.3 9.3 107 99-244 186-296 (357)
220 PF04816 DUF633: Family of unk 96.6 0.012 2.5E-07 52.8 8.5 54 124-181 1-56 (205)
221 PF01269 Fibrillarin: Fibrilla 96.4 0.19 4.2E-06 45.4 15.3 165 93-308 45-214 (229)
222 PRK10742 putative methyltransf 96.4 0.012 2.7E-07 54.0 7.8 48 118-165 84-133 (250)
223 KOG2940 Predicted methyltransf 96.4 0.0025 5.3E-08 57.6 3.0 96 120-245 72-168 (325)
224 KOG1975 mRNA cap methyltransfe 96.3 0.019 4E-07 54.5 8.4 121 98-245 104-231 (389)
225 PRK00050 16S rRNA m(4)C1402 me 96.2 0.019 4.1E-07 54.3 8.2 46 119-164 18-66 (296)
226 COG0421 SpeE Spermidine syntha 96.2 0.036 7.8E-07 52.1 9.9 99 122-245 78-184 (282)
227 COG1189 Predicted rRNA methyla 96.2 0.058 1.2E-06 49.1 10.5 55 95-152 57-112 (245)
228 COG0500 SmtA SAM-dependent met 96.1 0.1 2.2E-06 41.2 11.2 97 124-247 52-151 (257)
229 PF07942 N2227: N2227-like pro 96.1 0.077 1.7E-06 49.5 11.5 47 118-166 54-100 (270)
230 PF03141 Methyltransf_29: Puta 96.1 0.009 1.9E-07 59.7 5.5 129 92-255 88-223 (506)
231 PF01234 NNMT_PNMT_TEMT: NNMT/ 96.0 0.011 2.3E-07 54.8 4.9 115 116-248 52-196 (256)
232 KOG1709 Guanidinoacetate methy 95.9 0.034 7.3E-07 50.0 7.7 100 119-246 100-201 (271)
233 COG0144 Sun tRNA and rRNA cyto 95.9 0.11 2.3E-06 50.6 12.0 114 117-261 153-292 (355)
234 PF05148 Methyltransf_8: Hypot 95.8 0.12 2.6E-06 46.4 10.7 132 97-308 53-186 (219)
235 COG1889 NOP1 Fibrillarin-like 95.6 0.77 1.7E-05 41.0 14.9 172 95-325 50-226 (231)
236 KOG1663 O-methyltransferase [S 95.4 0.16 3.5E-06 46.0 10.1 104 118-245 71-177 (237)
237 COG0116 Predicted N6-adenine-s 95.4 0.22 4.7E-06 48.6 11.7 112 104-245 178-338 (381)
238 KOG3045 Predicted RNA methylas 95.1 0.28 6.1E-06 45.3 10.7 113 120-308 180-292 (325)
239 COG0220 Predicted S-adenosylme 95.1 0.16 3.4E-06 46.3 9.2 45 122-166 50-96 (227)
240 COG2384 Predicted SAM-dependen 95.0 0.15 3.2E-06 46.0 8.6 61 119-183 15-77 (226)
241 KOG2078 tRNA modification enzy 94.8 0.038 8.3E-07 54.1 4.6 86 92-184 225-310 (495)
242 PF11968 DUF3321: Putative met 94.7 0.48 1E-05 42.7 11.1 106 99-246 29-139 (219)
243 PF03059 NAS: Nicotianamine sy 94.6 0.23 5E-06 46.5 9.3 98 121-245 121-224 (276)
244 PF12147 Methyltransf_20: Puta 94.6 0.53 1.2E-05 44.3 11.5 103 120-246 135-244 (311)
245 PF01189 Nol1_Nop2_Fmu: NOL1/N 94.1 0.16 3.4E-06 47.8 7.2 75 94-179 65-142 (283)
246 PRK01544 bifunctional N5-gluta 93.9 0.42 9E-06 48.7 10.2 100 120-245 347-456 (506)
247 KOG2915 tRNA(1-methyladenosine 93.8 0.8 1.7E-05 42.7 10.7 61 117-181 102-165 (314)
248 COG1568 Predicted methyltransf 93.6 0.3 6.6E-06 45.5 7.6 77 117-220 149-227 (354)
249 TIGR03439 methyl_EasF probable 93.6 0.59 1.3E-05 44.8 9.9 105 120-246 76-192 (319)
250 PF01728 FtsJ: FtsJ-like methy 93.5 0.15 3.3E-06 44.2 5.4 50 100-153 4-59 (181)
251 COG5459 Predicted rRNA methyla 93.3 0.073 1.6E-06 51.1 3.2 107 117-248 110-222 (484)
252 COG4262 Predicted spermidine s 93.0 0.42 9.1E-06 46.3 7.8 100 120-247 289-403 (508)
253 KOG0024 Sorbitol dehydrogenase 92.8 0.17 3.7E-06 48.2 4.9 44 117-160 166-212 (354)
254 PF03686 UPF0146: Uncharacteri 92.3 0.43 9.3E-06 39.3 6.0 44 104-153 3-47 (127)
255 COG1255 Uncharacterized protei 92.2 0.79 1.7E-05 37.1 7.3 91 105-245 4-95 (129)
256 KOG1227 Putative methyltransfe 91.6 0.1 2.2E-06 49.1 1.8 72 96-167 167-243 (351)
257 COG3129 Predicted SAM-dependen 91.4 0.38 8.3E-06 43.8 5.2 61 104-167 63-127 (292)
258 KOG2352 Predicted spermine/spe 91.3 1.3 2.9E-05 44.4 9.3 97 122-248 50-158 (482)
259 PF01555 N6_N4_Mtase: DNA meth 91.0 0.6 1.3E-05 41.2 6.3 56 101-160 176-231 (231)
260 PF02005 TRM: N2,N2-dimethylgu 90.8 0.62 1.3E-05 45.7 6.6 96 120-245 49-148 (377)
261 COG1867 TRM1 N2,N2-dimethylgua 90.8 0.58 1.3E-05 45.3 6.1 46 121-166 53-100 (380)
262 PRK11524 putative methyltransf 90.4 1 2.2E-05 42.2 7.5 58 103-164 195-252 (284)
263 KOG2730 Methylase [General fun 89.9 0.55 1.2E-05 42.5 4.8 74 102-185 82-155 (263)
264 KOG1269 SAM-dependent methyltr 89.5 1.1 2.3E-05 43.9 6.9 102 117-246 107-210 (364)
265 PRK13699 putative methylase; P 89.4 1.6 3.5E-05 39.6 7.7 58 103-164 150-207 (227)
266 PF07757 AdoMet_MTase: Predict 89.2 0.57 1.2E-05 37.5 4.0 32 120-151 58-89 (112)
267 KOG3178 Hydroxyindole-O-methyl 88.9 1.7 3.7E-05 41.9 7.6 94 122-251 179-275 (342)
268 PF07091 FmrO: Ribosomal RNA m 88.7 2 4.3E-05 39.6 7.7 134 121-306 106-243 (251)
269 PF13578 Methyltransf_24: Meth 88.4 0.18 4E-06 39.5 0.7 94 125-245 1-99 (106)
270 COG1565 Uncharacterized conser 88.0 2 4.3E-05 41.7 7.5 62 102-163 59-130 (370)
271 PRK09424 pntA NAD(P) transhydr 87.3 1 2.2E-05 45.9 5.4 43 118-160 162-206 (509)
272 cd00315 Cyt_C5_DNA_methylase C 85.8 1.6 3.5E-05 40.7 5.6 40 123-162 2-42 (275)
273 PF04445 SAM_MT: Putative SAM- 85.6 2.2 4.8E-05 39.0 6.1 83 123-228 78-164 (234)
274 COG0293 FtsJ 23S rRNA methylas 84.7 2 4.3E-05 38.5 5.3 114 100-248 28-156 (205)
275 KOG2798 Putative trehalase [Ca 83.7 7.1 0.00015 37.3 8.7 121 120-248 150-293 (369)
276 COG1063 Tdh Threonine dehydrog 83.0 2.5 5.3E-05 40.9 5.7 43 118-160 166-211 (350)
277 KOG2671 Putative RNA methylase 83.0 1.2 2.7E-05 42.8 3.4 65 118-185 206-277 (421)
278 TIGR02822 adh_fam_2 zinc-bindi 82.2 19 0.00041 34.1 11.4 44 117-160 162-207 (329)
279 PF11599 AviRa: RRNA methyltra 81.9 3.4 7.4E-05 37.4 5.6 46 120-165 51-100 (246)
280 PF02636 Methyltransf_28: Puta 80.8 2.2 4.8E-05 39.2 4.3 43 121-163 19-71 (252)
281 PF04672 Methyltransf_19: S-ad 80.2 3.7 8.1E-05 38.3 5.5 107 123-246 71-185 (267)
282 KOG1331 Predicted methyltransf 80.0 0.76 1.6E-05 43.0 0.9 121 83-248 17-140 (293)
283 COG1748 LYS9 Saccharopine dehy 78.8 6.3 0.00014 38.8 6.9 55 122-185 2-59 (389)
284 PRK15001 SAM-dependent 23S rib 78.6 50 0.0011 32.5 13.1 66 95-167 24-89 (378)
285 KOG4058 Uncharacterized conser 76.9 15 0.00034 31.3 7.7 45 122-166 74-119 (199)
286 KOG2651 rRNA adenine N-6-methy 76.7 7.2 0.00016 38.2 6.4 47 104-154 140-188 (476)
287 TIGR00006 S-adenosyl-methyltra 76.3 16 0.00034 34.9 8.6 46 119-164 19-66 (305)
288 PRK09880 L-idonate 5-dehydroge 76.3 9.5 0.00021 36.3 7.3 43 118-160 167-212 (343)
289 KOG1201 Hydroxysteroid 17-beta 76.2 11 0.00023 35.7 7.3 63 116-185 33-98 (300)
290 PRK08703 short chain dehydroge 76.1 32 0.00068 30.5 10.3 45 118-163 3-51 (239)
291 PRK12826 3-ketoacyl-(acyl-carr 76.0 17 0.00037 32.2 8.6 60 119-185 4-67 (251)
292 TIGR01202 bchC 2-desacetyl-2-h 75.6 5.2 0.00011 37.6 5.2 40 119-158 143-185 (308)
293 cd00401 AdoHcyase S-adenosyl-L 75.4 8.1 0.00017 38.4 6.7 43 117-159 198-242 (413)
294 COG1064 AdhP Zn-dependent alco 74.3 6 0.00013 38.2 5.2 44 117-160 163-208 (339)
295 TIGR03201 dearomat_had 6-hydro 74.1 11 0.00024 35.9 7.2 43 117-159 163-207 (349)
296 PF01488 Shikimate_DH: Shikima 73.9 9.5 0.00021 31.4 5.8 46 117-162 8-56 (135)
297 cd08283 FDH_like_1 Glutathione 73.8 9.8 0.00021 37.0 6.8 45 117-161 181-228 (386)
298 PRK07523 gluconate 5-dehydroge 73.8 20 0.00044 32.1 8.5 61 118-185 7-71 (255)
299 TIGR03366 HpnZ_proposed putati 73.6 12 0.00025 34.6 7.0 42 119-160 119-163 (280)
300 PF02737 3HCDH_N: 3-hydroxyacy 72.5 8.6 0.00019 33.5 5.5 41 124-164 2-44 (180)
301 PF00145 DNA_methylase: C-5 cy 72.1 8.7 0.00019 35.9 5.9 41 123-163 2-43 (335)
302 cd08237 ribitol-5-phosphate_DH 72.0 6.4 0.00014 37.6 5.0 41 119-159 162-206 (341)
303 PF00107 ADH_zinc_N: Zinc-bind 71.8 4.4 9.6E-05 32.4 3.3 31 130-160 1-32 (130)
304 PRK06949 short chain dehydroge 71.6 25 0.00053 31.5 8.5 61 118-185 6-70 (258)
305 PF03721 UDPG_MGDP_dh_N: UDP-g 71.4 7 0.00015 34.3 4.6 37 123-159 2-40 (185)
306 COG1004 Ugd Predicted UDP-gluc 71.3 5.9 0.00013 39.0 4.5 37 123-159 2-40 (414)
307 PRK06124 gluconate 5-dehydroge 70.8 26 0.00055 31.4 8.5 62 117-185 7-72 (256)
308 PF02086 MethyltransfD12: D12 70.0 5.7 0.00012 36.1 4.0 53 104-159 7-59 (260)
309 cd01080 NAD_bind_m-THF_DH_Cycl 70.0 12 0.00027 32.3 5.8 50 97-152 26-78 (168)
310 PRK08213 gluconate 5-dehydroge 69.6 29 0.00063 31.2 8.6 61 118-185 9-73 (259)
311 PF05575 V_cholerae_RfbT: Vibr 69.6 3.6 7.8E-05 35.7 2.3 51 119-169 78-130 (286)
312 PF05050 Methyltransf_21: Meth 69.3 13 0.00027 30.9 5.7 42 126-167 1-50 (167)
313 cd08254 hydroxyacyl_CoA_DH 6-h 69.0 18 0.00039 33.7 7.3 42 118-159 163-206 (338)
314 PRK05867 short chain dehydroge 68.6 30 0.00065 31.0 8.4 60 119-185 7-70 (253)
315 TIGR02818 adh_III_F_hyde S-(hy 68.6 9.5 0.00021 36.8 5.4 44 117-160 182-228 (368)
316 cd01075 NAD_bind_Leu_Phe_Val_D 68.6 35 0.00075 30.2 8.6 43 116-160 23-69 (200)
317 cd05188 MDR Medium chain reduc 67.9 23 0.0005 31.5 7.5 41 119-159 133-175 (271)
318 PRK06172 short chain dehydroge 67.7 32 0.0007 30.7 8.4 61 119-185 5-68 (253)
319 TIGR02354 thiF_fam2 thiamine b 67.7 57 0.0012 28.9 9.8 34 118-151 18-54 (200)
320 TIGR00936 ahcY adenosylhomocys 67.6 8.3 0.00018 38.3 4.7 36 118-153 192-229 (406)
321 cd01078 NAD_bind_H4MPT_DH NADP 67.5 44 0.00095 29.0 9.0 46 117-162 24-72 (194)
322 cd08239 THR_DH_like L-threonin 67.5 17 0.00038 34.2 6.8 42 118-159 161-205 (339)
323 PRK08862 short chain dehydroge 67.4 31 0.00067 30.8 8.1 60 119-184 3-65 (227)
324 PRK08339 short chain dehydroge 66.8 35 0.00076 31.0 8.6 63 118-185 5-70 (263)
325 TIGR00561 pntA NAD(P) transhyd 66.8 14 0.00029 37.9 6.2 41 119-159 162-204 (511)
326 PRK06125 short chain dehydroge 66.6 36 0.00077 30.6 8.5 62 119-185 5-69 (259)
327 PLN02740 Alcohol dehydrogenase 66.6 9.9 0.00022 36.8 5.1 43 117-159 195-240 (381)
328 PRK09242 tropinone reductase; 65.5 41 0.00089 30.1 8.7 64 118-185 6-72 (257)
329 PF04989 CmcI: Cephalosporin h 64.8 31 0.00067 30.9 7.4 124 95-246 11-142 (206)
330 PLN03209 translocon at the inn 64.2 91 0.002 32.5 11.6 68 117-185 76-150 (576)
331 PRK07814 short chain dehydroge 64.0 42 0.0009 30.3 8.5 61 118-185 7-71 (263)
332 KOG1596 Fibrillarin and relate 63.9 59 0.0013 30.2 9.0 61 92-152 127-191 (317)
333 PRK08223 hypothetical protein; 63.9 12 0.00027 35.2 4.9 45 118-162 24-71 (287)
334 PRK06181 short chain dehydroge 63.8 1.1E+02 0.0023 27.4 11.1 58 121-185 1-62 (263)
335 PRK08945 putative oxoacyl-(acy 63.4 34 0.00073 30.5 7.7 47 117-164 8-58 (247)
336 COG1062 AdhC Zn-dependent alco 63.4 15 0.00033 35.5 5.4 43 117-159 182-227 (366)
337 KOG1122 tRNA and rRNA cytosine 63.2 86 0.0019 31.3 10.5 59 119-182 240-301 (460)
338 PF05206 TRM13: Methyltransfer 63.1 17 0.00037 33.7 5.7 113 119-234 17-151 (259)
339 PRK12475 thiamine/molybdopteri 63.0 53 0.0012 31.7 9.3 35 118-152 21-58 (338)
340 PRK05708 2-dehydropantoate 2-r 63.0 44 0.00095 31.5 8.6 39 122-160 3-43 (305)
341 KOG1253 tRNA methyltransferase 62.9 3.1 6.8E-05 41.8 0.8 49 119-167 108-159 (525)
342 cd08281 liver_ADH_like1 Zinc-d 62.9 25 0.00055 33.8 7.1 43 117-159 188-233 (371)
343 PRK07666 fabG 3-ketoacyl-(acyl 62.8 54 0.0012 28.9 8.8 60 119-185 5-68 (239)
344 PRK14106 murD UDP-N-acetylmura 62.7 33 0.00072 34.0 8.1 32 119-152 3-38 (450)
345 PRK07688 thiamine/molybdopteri 62.5 76 0.0016 30.6 10.2 35 118-152 21-58 (339)
346 PRK07530 3-hydroxybutyryl-CoA 62.2 30 0.00065 32.2 7.3 44 122-165 5-50 (292)
347 PRK07102 short chain dehydroge 62.1 47 0.001 29.5 8.3 58 122-185 2-63 (243)
348 PRK05786 fabG 3-ketoacyl-(acyl 61.7 47 0.001 29.2 8.2 59 119-185 3-65 (238)
349 PRK05876 short chain dehydroge 61.5 48 0.001 30.4 8.5 61 118-185 3-67 (275)
350 PF10237 N6-adenineMlase: Prob 61.4 87 0.0019 26.9 9.3 107 101-246 11-118 (162)
351 TIGR01963 PHB_DH 3-hydroxybuty 61.2 44 0.00096 29.6 8.0 58 121-185 1-62 (255)
352 PLN03154 putative allyl alcoho 61.2 31 0.00068 32.9 7.4 43 117-159 155-200 (348)
353 PRK12548 shikimate 5-dehydroge 61.0 59 0.0013 30.5 9.0 34 118-152 123-160 (289)
354 TIGR00675 dcm DNA-methyltransf 61.0 15 0.00032 35.0 5.0 40 124-163 1-41 (315)
355 TIGR03451 mycoS_dep_FDH mycoth 60.9 15 0.00032 35.2 5.0 43 117-159 173-218 (358)
356 COG0686 Ald Alanine dehydrogen 60.8 1.1E+02 0.0023 29.6 10.4 111 101-245 141-262 (371)
357 PRK00258 aroE shikimate 5-dehy 59.9 43 0.00093 31.1 7.8 45 118-162 120-167 (278)
358 cd00757 ThiF_MoeB_HesA_family 59.9 31 0.00068 31.0 6.7 34 119-152 19-55 (228)
359 TIGR02356 adenyl_thiF thiazole 59.9 40 0.00086 29.8 7.3 35 118-152 18-55 (202)
360 PRK07097 gluconate 5-dehydroge 59.8 55 0.0012 29.5 8.5 62 118-185 7-71 (265)
361 PRK07774 short chain dehydroge 59.2 62 0.0013 28.6 8.6 60 119-185 4-67 (250)
362 PRK12429 3-hydroxybutyrate deh 59.2 62 0.0013 28.7 8.6 60 119-185 2-65 (258)
363 PRK05476 S-adenosyl-L-homocyst 59.1 15 0.00033 36.6 4.8 37 118-154 209-247 (425)
364 PRK07454 short chain dehydroge 59.1 58 0.0013 28.8 8.4 59 120-185 5-67 (241)
365 PRK07063 short chain dehydroge 58.9 64 0.0014 28.9 8.7 63 118-185 4-70 (260)
366 PRK11730 fadB multifunctional 58.5 25 0.00055 37.5 6.7 43 122-164 314-358 (715)
367 KOG0725 Reductases with broad 58.2 67 0.0015 29.9 8.8 66 117-185 4-72 (270)
368 cd08230 glucose_DH Glucose deh 58.2 19 0.00041 34.4 5.3 41 119-159 171-216 (355)
369 TIGR03206 benzo_BadH 2-hydroxy 57.9 66 0.0014 28.4 8.5 60 119-185 1-64 (250)
370 PRK08085 gluconate 5-dehydroge 57.4 66 0.0014 28.7 8.5 60 119-185 7-70 (254)
371 cd08300 alcohol_DH_class_III c 56.9 21 0.00045 34.4 5.3 42 118-159 184-228 (368)
372 PRK07035 short chain dehydroge 56.7 69 0.0015 28.5 8.5 62 118-185 5-69 (252)
373 PRK01220 malonate decarboxylas 56.4 54 0.0012 25.8 6.5 75 56-141 18-92 (99)
374 PRK07890 short chain dehydroge 56.1 74 0.0016 28.3 8.6 60 119-185 3-66 (258)
375 PRK06718 precorrin-2 dehydroge 56.0 66 0.0014 28.5 8.0 33 118-150 7-41 (202)
376 PRK07326 short chain dehydroge 56.0 62 0.0013 28.4 8.0 59 119-185 4-66 (237)
377 PRK06113 7-alpha-hydroxysteroi 55.8 79 0.0017 28.3 8.7 62 118-185 8-72 (255)
378 PF00670 AdoHcyase_NAD: S-aden 55.8 44 0.00095 28.8 6.5 36 117-152 19-56 (162)
379 PRK08644 thiamine biosynthesis 55.8 1.1E+02 0.0023 27.3 9.4 34 118-151 25-61 (212)
380 PRK07062 short chain dehydroge 55.6 78 0.0017 28.4 8.7 64 118-185 5-71 (265)
381 PRK02103 malonate decarboxylas 55.5 55 0.0012 26.1 6.4 75 55-141 20-96 (105)
382 PRK03369 murD UDP-N-acetylmura 55.4 22 0.00048 36.0 5.4 40 117-156 8-49 (488)
383 COG3392 Adenine-specific DNA m 54.8 23 0.00051 33.0 4.9 63 103-166 8-72 (330)
384 TIGR01470 cysG_Nterm siroheme 54.8 57 0.0012 29.0 7.4 33 119-151 7-41 (205)
385 PRK07411 hypothetical protein; 54.7 11 0.00023 37.2 2.9 43 119-161 36-81 (390)
386 PLN02668 indole-3-acetate carb 54.6 16 0.00036 35.9 4.2 33 120-152 63-112 (386)
387 PRK06935 2-deoxy-D-gluconate 3 54.5 74 0.0016 28.5 8.4 61 118-185 12-75 (258)
388 COG0499 SAM1 S-adenosylhomocys 54.3 21 0.00046 34.8 4.7 57 92-157 189-248 (420)
389 cd08301 alcohol_DH_plants Plan 54.2 24 0.00052 33.8 5.3 43 117-159 184-229 (369)
390 PF11899 DUF3419: Protein of u 54.1 44 0.00096 32.8 7.1 61 95-163 17-78 (380)
391 PLN02545 3-hydroxybutyryl-CoA 54.1 37 0.00081 31.6 6.4 42 122-163 5-48 (295)
392 PRK12939 short chain dehydroge 53.9 90 0.002 27.5 8.7 61 118-185 4-68 (250)
393 PRK06139 short chain dehydroge 53.9 63 0.0014 30.8 8.0 60 119-185 5-68 (330)
394 PTZ00245 ubiquitin activating 53.9 34 0.00073 32.0 5.8 47 119-165 24-73 (287)
395 PRK06194 hypothetical protein; 53.7 77 0.0017 28.9 8.4 60 119-185 4-67 (287)
396 PRK05866 short chain dehydroge 53.6 75 0.0016 29.5 8.4 61 118-185 37-101 (293)
397 PRK05854 short chain dehydroge 53.5 85 0.0018 29.4 8.8 64 117-185 10-77 (313)
398 PRK11154 fadJ multifunctional 52.7 34 0.00073 36.5 6.5 44 122-165 310-356 (708)
399 PRK05599 hypothetical protein; 52.3 68 0.0015 28.7 7.7 58 122-185 1-61 (246)
400 PLN02780 ketoreductase/ oxidor 52.1 57 0.0012 30.9 7.4 60 120-184 52-115 (320)
401 PRK07677 short chain dehydroge 51.8 84 0.0018 28.0 8.2 59 121-185 1-62 (252)
402 PRK07831 short chain dehydroge 51.7 1.1E+02 0.0023 27.5 9.0 65 117-185 13-81 (262)
403 PRK08277 D-mannonate oxidoredu 51.7 90 0.0019 28.3 8.5 62 118-185 7-71 (278)
404 PRK05565 fabG 3-ketoacyl-(acyl 51.3 1E+02 0.0022 27.0 8.6 60 119-185 3-67 (247)
405 cd08255 2-desacetyl-2-hydroxye 51.0 57 0.0012 29.5 7.1 43 117-159 94-139 (277)
406 PRK07576 short chain dehydroge 50.9 94 0.002 28.1 8.5 60 119-185 7-70 (264)
407 cd08277 liver_alcohol_DH_like 50.9 29 0.00063 33.3 5.3 43 117-159 181-226 (365)
408 PRK07478 short chain dehydroge 50.9 97 0.0021 27.6 8.5 60 119-185 4-67 (254)
409 COG0863 DNA modification methy 50.8 68 0.0015 29.6 7.6 61 102-166 208-268 (302)
410 PRK07231 fabG 3-ketoacyl-(acyl 50.8 94 0.002 27.4 8.3 60 119-185 3-65 (251)
411 PLN02827 Alcohol dehydrogenase 50.7 30 0.00064 33.6 5.3 43 117-159 190-235 (378)
412 cd01487 E1_ThiF_like E1_ThiF_l 50.6 96 0.0021 26.7 8.0 30 123-152 1-33 (174)
413 KOG4589 Cell division protein 50.4 23 0.00049 31.6 3.9 34 118-151 67-103 (232)
414 PRK10309 galactitol-1-phosphat 50.3 28 0.00061 32.9 5.0 43 117-159 157-202 (347)
415 PRK06138 short chain dehydroge 50.2 98 0.0021 27.3 8.4 59 119-185 3-65 (252)
416 PRK07878 molybdopterin biosynt 50.2 18 0.00039 35.6 3.7 44 119-162 40-86 (392)
417 PLN02657 3,8-divinyl protochlo 49.8 1.1E+02 0.0025 29.8 9.3 62 117-185 56-123 (390)
418 cd08232 idonate-5-DH L-idonate 49.7 59 0.0013 30.4 7.1 40 120-159 165-207 (339)
419 KOG2539 Mitochondrial/chloropl 49.7 16 0.00036 36.6 3.3 89 117-229 197-289 (491)
420 PRK05690 molybdopterin biosynt 49.6 26 0.00057 32.1 4.5 35 118-152 29-66 (245)
421 TIGR02825 B4_12hDH leukotriene 49.5 61 0.0013 30.2 7.2 43 117-159 135-180 (325)
422 PRK01747 mnmC bifunctional tRN 49.4 1.3E+02 0.0029 31.6 10.3 31 122-152 59-103 (662)
423 PRK06720 hypothetical protein; 49.3 1.2E+02 0.0027 25.8 8.4 61 119-185 14-77 (169)
424 PRK08306 dipicolinate synthase 49.2 67 0.0015 30.3 7.3 42 117-158 148-191 (296)
425 PF01262 AlaDh_PNT_C: Alanine 48.6 29 0.00064 29.6 4.4 44 117-160 16-61 (168)
426 TIGR00518 alaDH alanine dehydr 48.2 35 0.00075 33.3 5.3 42 119-160 165-208 (370)
427 PF03141 Methyltransf_29: Puta 48.0 31 0.00067 35.0 5.0 92 122-248 367-464 (506)
428 PRK05653 fabG 3-ketoacyl-(acyl 48.0 1.2E+02 0.0026 26.5 8.5 60 119-185 3-66 (246)
429 COG0300 DltE Short-chain dehyd 48.0 1.2E+02 0.0026 28.3 8.6 62 118-185 3-68 (265)
430 PRK05600 thiamine biosynthesis 47.6 23 0.0005 34.6 4.0 42 118-159 38-82 (370)
431 cd08238 sorbose_phosphate_red 47.6 33 0.00072 33.6 5.2 44 118-161 173-222 (410)
432 TIGR02279 PaaC-3OHAcCoADH 3-hy 47.3 40 0.00086 34.4 5.8 43 122-164 6-50 (503)
433 TIGR03130 malonate_delta malon 47.2 90 0.0019 24.6 6.4 74 56-141 19-94 (98)
434 PLN02896 cinnamyl-alcohol dehy 47.2 2.5E+02 0.0055 26.5 11.5 60 118-185 7-70 (353)
435 PLN02662 cinnamyl-alcohol dehy 47.1 82 0.0018 29.2 7.6 61 120-185 3-67 (322)
436 PRK08217 fabG 3-ketoacyl-(acyl 47.1 1.2E+02 0.0026 26.7 8.4 59 119-184 3-65 (253)
437 cd08296 CAD_like Cinnamyl alco 46.9 68 0.0015 30.1 7.1 43 117-159 160-204 (333)
438 PRK08643 acetoin reductase; Va 46.8 1.2E+02 0.0025 27.0 8.3 58 121-185 2-63 (256)
439 PRK05597 molybdopterin biosynt 45.7 14 0.0003 35.9 2.2 35 118-152 25-62 (355)
440 PRK09291 short chain dehydroge 45.6 1.1E+02 0.0023 27.3 7.8 58 121-185 2-63 (257)
441 PRK09186 flagellin modificatio 45.5 1.3E+02 0.0028 26.7 8.4 62 119-185 2-67 (256)
442 cd08295 double_bond_reductase_ 45.5 72 0.0016 30.0 7.0 44 117-160 148-194 (338)
443 PRK08251 short chain dehydroge 45.5 1.3E+02 0.0028 26.5 8.4 60 121-185 2-65 (248)
444 PF07279 DUF1442: Protein of u 45.4 2.4E+02 0.0051 25.6 12.0 57 105-164 29-91 (218)
445 cd08231 MDR_TM0436_like Hypoth 45.3 78 0.0017 30.0 7.3 41 119-159 176-219 (361)
446 PRK06914 short chain dehydroge 45.2 1.3E+02 0.0028 27.2 8.5 61 120-185 2-66 (280)
447 PRK07533 enoyl-(acyl carrier p 45.0 71 0.0015 28.8 6.7 40 117-156 6-50 (258)
448 PLN02494 adenosylhomocysteinas 44.6 33 0.00071 34.8 4.6 37 117-153 250-288 (477)
449 PLN02178 cinnamyl-alcohol dehy 44.6 38 0.00083 32.9 5.0 35 119-153 177-213 (375)
450 PRK07904 short chain dehydroge 44.4 1E+02 0.0022 27.8 7.6 61 119-185 6-72 (253)
451 cd08294 leukotriene_B4_DH_like 44.0 80 0.0017 29.2 7.0 44 117-160 140-186 (329)
452 KOG3924 Putative protein methy 43.8 1.1E+02 0.0024 30.3 7.9 108 118-246 190-303 (419)
453 PRK12935 acetoacetyl-CoA reduc 43.8 1.5E+02 0.0033 26.1 8.6 60 119-185 4-68 (247)
454 PRK07791 short chain dehydroge 43.8 1.3E+02 0.0028 27.7 8.3 62 118-185 3-76 (286)
455 PRK08303 short chain dehydroge 43.7 1.1E+02 0.0024 28.7 7.8 33 118-151 5-41 (305)
456 PRK12384 sorbitol-6-phosphate 43.6 1.4E+02 0.003 26.6 8.4 60 121-185 2-65 (259)
457 PRK05875 short chain dehydroge 43.6 1.4E+02 0.0031 26.9 8.5 62 119-185 5-70 (276)
458 PLN02586 probable cinnamyl alc 43.5 35 0.00076 32.8 4.6 35 119-153 182-218 (360)
459 PRK00141 murD UDP-N-acetylmura 43.5 86 0.0019 31.5 7.5 36 117-152 11-48 (473)
460 PLN00203 glutamyl-tRNA reducta 43.5 2.1E+02 0.0045 29.4 10.3 68 89-160 238-308 (519)
461 PRK06940 short chain dehydroge 43.2 1.2E+02 0.0026 27.7 7.9 56 122-185 3-61 (275)
462 PLN02214 cinnamoyl-CoA reducta 43.2 2.9E+02 0.0064 26.1 11.9 35 118-153 7-45 (342)
463 PRK02318 mannitol-1-phosphate 42.9 30 0.00065 33.8 4.0 40 122-161 1-43 (381)
464 cd08245 CAD Cinnamyl alcohol d 42.7 95 0.0021 28.8 7.3 43 117-159 159-203 (330)
465 PRK09072 short chain dehydroge 42.6 1.4E+02 0.003 26.8 8.2 60 119-185 3-65 (263)
466 COG5379 BtaA S-adenosylmethion 42.4 59 0.0013 31.0 5.5 62 95-163 45-106 (414)
467 PRK08589 short chain dehydroge 42.4 1.5E+02 0.0033 26.8 8.5 59 119-185 4-66 (272)
468 TIGR00507 aroE shikimate 5-deh 42.1 1.2E+02 0.0027 27.8 7.8 44 118-162 114-160 (270)
469 PRK08762 molybdopterin biosynt 41.3 97 0.0021 30.2 7.3 33 119-151 133-168 (376)
470 PRK12825 fabG 3-ketoacyl-(acyl 41.2 1.7E+02 0.0038 25.4 8.5 60 119-185 4-68 (249)
471 PRK12829 short chain dehydroge 41.1 1.5E+02 0.0033 26.3 8.2 60 117-185 7-70 (264)
472 COG0270 Dcm Site-specific DNA 40.9 60 0.0013 31.0 5.7 43 121-163 3-46 (328)
473 PRK07792 fabG 3-ketoacyl-(acyl 40.8 1.9E+02 0.004 27.0 9.0 63 117-185 8-74 (306)
474 KOG2018 Predicted dinucleotide 40.8 1.3E+02 0.0028 29.0 7.6 41 118-158 71-114 (430)
475 PRK13394 3-hydroxybutyrate deh 40.8 1.7E+02 0.0036 26.0 8.4 60 119-185 5-68 (262)
476 PLN02514 cinnamyl-alcohol dehy 40.7 1E+02 0.0022 29.5 7.2 39 119-157 179-219 (357)
477 PRK08268 3-hydroxy-acyl-CoA de 40.7 63 0.0014 33.0 6.1 43 122-164 8-52 (507)
478 PRK07109 short chain dehydroge 40.7 1.5E+02 0.0032 28.2 8.4 61 118-185 5-69 (334)
479 cd08285 NADP_ADH NADP(H)-depen 40.7 54 0.0012 31.0 5.3 43 117-159 163-208 (351)
480 TIGR01035 hemA glutamyl-tRNA r 39.9 84 0.0018 31.2 6.7 39 117-155 176-217 (417)
481 PRK06198 short chain dehydroge 39.8 1.7E+02 0.0037 26.0 8.3 61 118-185 3-68 (260)
482 PF12242 Eno-Rase_NADH_b: NAD( 39.3 66 0.0014 24.2 4.3 42 105-150 26-72 (78)
483 PLN02989 cinnamyl-alcohol dehy 39.2 1.4E+02 0.003 27.8 7.8 33 120-153 4-40 (325)
484 TIGR01832 kduD 2-deoxy-D-gluco 38.9 1.7E+02 0.0037 25.7 8.1 58 119-185 3-64 (248)
485 PF03435 Saccharop_dh: Sacchar 38.7 83 0.0018 30.5 6.4 52 124-185 1-58 (386)
486 PRK08265 short chain dehydroge 38.7 1.7E+02 0.0036 26.3 8.1 57 119-185 4-64 (261)
487 cd08240 6_hydroxyhexanoate_dh_ 38.5 1.1E+02 0.0023 28.9 7.0 41 119-159 174-217 (350)
488 KOG3115 Methyltransferase-like 38.5 46 0.00099 30.1 4.0 46 120-165 60-107 (249)
489 PRK05650 short chain dehydroge 38.4 1.7E+02 0.0037 26.3 8.1 57 122-185 1-61 (270)
490 cd01491 Ube1_repeat1 Ubiquitin 38.2 52 0.0011 31.0 4.6 34 119-152 17-53 (286)
491 KOG0022 Alcohol dehydrogenase, 38.0 62 0.0013 31.2 5.0 42 118-159 190-234 (375)
492 PRK00421 murC UDP-N-acetylmura 37.7 46 0.001 33.2 4.5 36 117-152 3-41 (461)
493 PRK08594 enoyl-(acyl carrier p 37.6 1.4E+02 0.003 26.9 7.4 62 119-185 5-71 (257)
494 PRK05872 short chain dehydroge 37.4 1.6E+02 0.0034 27.2 7.9 61 117-185 5-69 (296)
495 PRK05562 precorrin-2 dehydroge 37.4 1.4E+02 0.0031 27.1 7.2 40 119-158 23-66 (223)
496 cd01483 E1_enzyme_family Super 37.3 60 0.0013 26.6 4.5 30 123-152 1-33 (143)
497 cd08278 benzyl_alcohol_DH Benz 37.3 1.1E+02 0.0023 29.3 6.9 42 118-159 184-228 (365)
498 cd01488 Uba3_RUB Ubiquitin act 37.1 35 0.00076 32.3 3.3 30 123-152 1-33 (291)
499 TIGR03589 PseB UDP-N-acetylglu 37.1 3.6E+02 0.0077 25.3 11.2 58 119-185 2-65 (324)
500 cd08299 alcohol_DH_class_I_II_ 37.1 73 0.0016 30.7 5.7 42 117-158 187-231 (373)
No 1
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.96 E-value=1.1e-29 Score=221.69 Aligned_cols=155 Identities=36% Similarity=0.584 Sum_probs=97.5
Q ss_pred eeEEEecccccCCCCccceeehhHHHHHHHHHhhcC---CCCCCCCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchH
Q 019839 79 FNVTIQHNITSLIPSVGLQVWKAELVLADFVMHKMC---TSSDFNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNY 153 (335)
Q Consensus 79 ~~i~i~~~~~~~~~~~G~~vW~aa~~La~~l~~~~~---~~~~~~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~ 153 (335)
..+.|++... .++|.++|++|++|++||..... .+..+++++|||||||+|++||++|+. +++|++||+++
T Consensus 4 ~~l~i~e~~~---~~~G~~vW~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~- 79 (173)
T PF10294_consen 4 KTLQIEEDWG---DGTGGKVWPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE- 79 (173)
T ss_dssp ----------------------HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--
T ss_pred cccccccccc---cCCcEEEechHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-
Confidence 3555555532 47899999999999999998521 135689999999999999999999999 68999999997
Q ss_pred HHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHH
Q 019839 154 ILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDAL 233 (335)
Q Consensus 154 ~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L 233 (335)
++++++.|++.|.... ..++.+..++|++.... +.....+||+||||||+|+++.+++|
T Consensus 80 ~l~~l~~Ni~~N~~~~--~~~v~v~~L~Wg~~~~~-------------------~~~~~~~~D~IlasDv~Y~~~~~~~L 138 (173)
T PF10294_consen 80 VLELLRRNIELNGSLL--DGRVSVRPLDWGDELDS-------------------DLLEPHSFDVILASDVLYDEELFEPL 138 (173)
T ss_dssp HHHHHHHHHHTT----------EEEE--TTS-HHH-------------------HHHS-SSBSEEEEES--S-GGGHHHH
T ss_pred hhHHHHHHHHhccccc--cccccCcEEEecCcccc-------------------cccccccCCEEEEecccchHHHHHHH
Confidence 9999999999997422 57899999999985211 11123589999999999999999999
Q ss_pred HHHHHHhccCCCcceeeceEEEEEEeeecccc
Q 019839 234 FHTLKRLMPLGSKKVLVNMVLYLALEKRYNFS 265 (335)
Q Consensus 234 ~~tl~~lL~~~~~~~~~~p~i~ia~~~R~~ft 265 (335)
++||.+++++++. +|+++++|....
T Consensus 139 ~~tl~~ll~~~~~-------vl~~~~~R~~~~ 163 (173)
T PF10294_consen 139 VRTLKRLLKPNGK-------VLLAYKRRRKSE 163 (173)
T ss_dssp HHHHHHHBTT-TT-------EEEEEE-S-TGG
T ss_pred HHHHHHHhCCCCE-------EEEEeCEecHHH
Confidence 9999999998773 899999997643
No 2
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=1.1e-18 Score=146.64 Aligned_cols=148 Identities=26% Similarity=0.348 Sum_probs=114.9
Q ss_pred Ccc-ceeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCc-cCHHHHHHHHhC--CEEEEecCchHHHHHHHHHHHHccCC
Q 019839 93 SVG-LQVWKAELVLADFVMHKMCTSSDFNGIISLELGAG-TGLAGILLSRVA--WTVFLTDHGNYILDNCAKNVQLNSGV 168 (335)
Q Consensus 93 ~~G-~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~G-tGL~gl~la~~~--~~V~~TD~~~~~l~~~~~Nv~~N~~~ 168 (335)
.+| ..+||+...||.+++.. +..++|++|||||.| |||.||++|..+ +.|..||.++..+.++++-+..|...
T Consensus 4 ntgnvciwpseeala~~~l~~---~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s 80 (201)
T KOG3201|consen 4 NTGNVCIWPSEEALAWTILRD---PNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMAS 80 (201)
T ss_pred CCCcEEecccHHHHHHHHHhc---hhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhccccc
Confidence 344 68999999999999987 477999999999999 999999999885 68999999999999999988888432
Q ss_pred CCCCCeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839 169 FSHQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV 248 (335)
Q Consensus 169 ~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~ 248 (335)
. ..++.+.+..|.... ...+...||+|+||||+|.++..++|++||+.+|+|.|+
T Consensus 81 ~--~tsc~vlrw~~~~aq---------------------sq~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~-- 135 (201)
T KOG3201|consen 81 S--LTSCCVLRWLIWGAQ---------------------SQQEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGR-- 135 (201)
T ss_pred c--cceehhhHHHHhhhH---------------------HHHhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccc--
Confidence 1 234433333332221 112344899999999999999999999999999999886
Q ss_pred eeceEEEEEEeeeccccccchhhhhhhhhHHHHHHh
Q 019839 249 LVNMVLYLALEKRYNFSLNDLDVVANGYSHFRSYIM 284 (335)
Q Consensus 249 ~~~p~i~ia~~~R~~ft~~~~d~v~~~~~~f~~~l~ 284 (335)
+++...+|-+ ..+.|+.+..
T Consensus 136 -----Al~fsPRRg~-----------sL~kF~de~~ 155 (201)
T KOG3201|consen 136 -----ALLFSPRRGQ-----------SLQKFLDEVG 155 (201)
T ss_pred -----eeEecCcccc-----------hHHHHHHHHH
Confidence 3455566765 3566776664
No 3
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=99.73 E-value=1.8e-17 Score=150.79 Aligned_cols=144 Identities=31% Similarity=0.434 Sum_probs=116.7
Q ss_pred CCccceeehhHHHHHHHHHhhcCCC------CCCC--CCeEEEEcCccCHHHHHHHHh-CCEEEEecCchHHHHHHHHHH
Q 019839 92 PSVGLQVWKAELVLADFVMHKMCTS------SDFN--GIISLELGAGTGLAGILLSRV-AWTVFLTDHGNYILDNCAKNV 162 (335)
Q Consensus 92 ~~~G~~vW~aa~~La~~l~~~~~~~------~~~~--g~~VLELG~GtGL~gl~la~~-~~~V~~TD~~~~~l~~~~~Nv 162 (335)
......+|+++-.+|.++.....++ ..++ .++|||||+|||++|+.+|.. ++.|++||.. .++.+++.|.
T Consensus 50 ~~~~~~~w~~~~~la~~~~~~~~~~~~~~~~~g~~~~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~-~~~~~L~~~~ 128 (248)
T KOG2793|consen 50 QGISAYLWSCATTLAQPLWERRRDSELTATLIGFKTKYINVLELGSGTGLVGILAALLLGAEVVLTDLP-KVVENLKFNR 128 (248)
T ss_pred cceeeEEeehhhccchhhhhhhcCchhhhccccccccceeEEEecCCccHHHHHHHHHhcceeccCCch-hhHHHHHHhh
Confidence 4567899999999999998875311 1122 457999999999999999995 7899999996 7888888887
Q ss_pred HHccCCCCC-CCeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCC-ccEEEEeccccCcccHHHHHHHHHHh
Q 019839 163 QLNSGVFSH-QGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQR-ASVLLAADVIYSDDLTDALFHTLKRL 240 (335)
Q Consensus 163 ~~N~~~~~~-~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~-fDlIlasDviY~~~~~~~L~~tl~~l 240 (335)
..|....+. ...+.+..|+|++.....+ ..+. +|+||||||+|++...+.|+.+++.+
T Consensus 129 ~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~--------------------~~~~~~DlilasDvvy~~~~~e~Lv~tla~l 188 (248)
T KOG2793|consen 129 DKNNIALNQLGGSVIVAILVWGNALDVSF--------------------RLPNPFDLILASDVVYEEESFEGLVKTLAFL 188 (248)
T ss_pred hhhhhhhhhcCCceeEEEEecCCcccHhh--------------------ccCCcccEEEEeeeeecCCcchhHHHHHHHH
Confidence 777655443 4589999999999854321 1233 99999999999999999999999999
Q ss_pred ccCCCcceeeceEEEEEEeeecc
Q 019839 241 MPLGSKKVLVNMVLYLALEKRYN 263 (335)
Q Consensus 241 L~~~~~~~~~~p~i~ia~~~R~~ 263 (335)
|..++ + +++++..|..
T Consensus 189 l~~~~--~-----i~l~~~lr~~ 204 (248)
T KOG2793|consen 189 LAKDG--T-----IFLAYPLRRD 204 (248)
T ss_pred HhcCC--e-----EEEEEecccc
Confidence 99877 5 8899988864
No 4
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=99.71 E-value=1.7e-17 Score=143.79 Aligned_cols=137 Identities=23% Similarity=0.332 Sum_probs=112.3
Q ss_pred CCccceeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhC-CEEEEecCchHHHHHHHHHHHHccCCCC
Q 019839 92 PSVGLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDNCAKNVQLNSGVFS 170 (335)
Q Consensus 92 ~~~G~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~-~~V~~TD~~~~~l~~~~~Nv~~N~~~~~ 170 (335)
+..+...|.+.+.||+|+..+ +..++||+|||+|+|.||++|++|+.| +.|+.+|+.|....+++.|++.|+
T Consensus 54 Ppfwa~~WagG~~lAR~i~~~---PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~ang---- 126 (218)
T COG3897 54 PPFWAFAWAGGQVLARYIDDH---PETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANG---- 126 (218)
T ss_pred chHHHHHHhhhHHHHHHHhcC---ccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhcc----
Confidence 457789999999999999998 588999999999999999999999997 579999999999999999999997
Q ss_pred CCCeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcceee
Q 019839 171 HQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLV 250 (335)
Q Consensus 171 ~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~~~ 250 (335)
..+.+...|-... ...||+||++|++|+....+.|+.++.++...|. .
T Consensus 127 --v~i~~~~~d~~g~--------------------------~~~~Dl~LagDlfy~~~~a~~l~~~~~~l~~~g~-~--- 174 (218)
T COG3897 127 --VSILFTHADLIGS--------------------------PPAFDLLLAGDLFYNHTEADRLIPWKDRLAEAGA-A--- 174 (218)
T ss_pred --ceeEEeeccccCC--------------------------CcceeEEEeeceecCchHHHHHHHHHHHHHhCCC-E---
Confidence 3455555543331 3479999999999999999999997777766543 3
Q ss_pred ceEEEEEEeeeccccccchh
Q 019839 251 NMVLYLALEKRYNFSLNDLD 270 (335)
Q Consensus 251 ~p~i~ia~~~R~~ft~~~~d 270 (335)
+++.-..|..+-.+++.
T Consensus 175 ---vlvgdp~R~~lpk~~l~ 191 (218)
T COG3897 175 ---VLVGDPGRAYLPKKRLE 191 (218)
T ss_pred ---EEEeCCCCCCCchhhhh
Confidence 55666667666555553
No 5
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.48 E-value=1.1e-13 Score=124.47 Aligned_cols=108 Identities=16% Similarity=0.227 Sum_probs=89.5
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcc
Q 019839 119 FNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS 198 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~ 198 (335)
+.|++|||+|||-|+++..+|+.|++|++.|.++.+++.++..+..|... .+|.....
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~-----------i~y~~~~~----------- 115 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVN-----------IDYRQATV----------- 115 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhcccc-----------ccchhhhH-----------
Confidence 78999999999999999999999999999999999999999998887632 23332210
Q ss_pred ccccccCcchhh-ccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcceeeceEEEEEEeeecc
Q 019839 199 QERYSWNSSELK-EVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLVNMVLYLALEKRYN 263 (335)
Q Consensus 199 ~~~~~w~~~~~~-~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~~~~p~i~ia~~~R~~ 263 (335)
.++. ..++||+|++.+|+.|.++.+.+++.+.++++|+| . ++++.-.|+.
T Consensus 116 --------edl~~~~~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G--~-----lf~STinrt~ 166 (243)
T COG2227 116 --------EDLASAGGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGG--I-----LFLSTINRTL 166 (243)
T ss_pred --------HHHHhcCCCccEEEEhhHHHccCCHHHHHHHHHHHcCCCc--E-----EEEeccccCH
Confidence 1122 23699999999999999999999999999999987 4 6777777754
No 6
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.46 E-value=1.5e-12 Score=113.21 Aligned_cols=111 Identities=18% Similarity=0.264 Sum_probs=90.2
Q ss_pred hhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCC--EEEEecCchHHHHHHHHHHHHccCCCCCCCeeEE
Q 019839 100 KAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAW--TVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHV 177 (335)
Q Consensus 100 ~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~--~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v 177 (335)
.++.+|++++... ++++|||||||+|.+|+.+++.+. +|+++|+++.+++.+++|++.|.. .++.+
T Consensus 18 ~~t~lL~~~l~~~-------~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~-----~~v~~ 85 (170)
T PF05175_consen 18 AGTRLLLDNLPKH-------KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGL-----ENVEV 85 (170)
T ss_dssp HHHHHHHHHHHHH-------TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTC-----TTEEE
T ss_pred HHHHHHHHHHhhc-------cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCc-----ccccc
Confidence 4677888888654 678999999999999999999864 599999999999999999999984 33888
Q ss_pred EeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcc-----cHHHHHHHHHHhccCCCc
Q 019839 178 RDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDD-----LTDALFHTLKRLMPLGSK 246 (335)
Q Consensus 178 ~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~-----~~~~L~~tl~~lL~~~~~ 246 (335)
...|+.+..+ ..+||+|++.-.++... ....+++...++|+++|.
T Consensus 86 ~~~d~~~~~~------------------------~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~ 135 (170)
T PF05175_consen 86 VQSDLFEALP------------------------DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGR 135 (170)
T ss_dssp EESSTTTTCC------------------------TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEE
T ss_pred cccccccccc------------------------ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCE
Confidence 8888876532 35899999998876653 468889999999999884
No 7
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.44 E-value=8e-13 Score=105.95 Aligned_cols=101 Identities=17% Similarity=0.169 Sum_probs=80.6
Q ss_pred CCCeEEEEcCccCHHHHHHHH--hCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839 120 NGIISLELGAGTGLAGILLSR--VAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA 197 (335)
Q Consensus 120 ~g~~VLELG~GtGL~gl~la~--~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~ 197 (335)
+|.+|||||||+|..++.+++ .+.+|++.|+++.+++.+++|+..+.. ..++++...|+ ...
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~----~~~i~~~~~d~-~~~----------- 64 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGL----SDRITFVQGDA-EFD----------- 64 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTT----TTTEEEEESCC-HGG-----------
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCC----CCCeEEEECcc-ccC-----------
Confidence 578999999999999999999 589999999999999999999965543 57899999888 210
Q ss_pred cccccccCcchhhccCCccEEEEec-ccc---CcccHHHHHHHHHHhccCCCcc
Q 019839 198 SQERYSWNSSELKEVQRASVLLAAD-VIY---SDDLTDALFHTLKRLMPLGSKK 247 (335)
Q Consensus 198 ~~~~~~w~~~~~~~~~~fDlIlasD-viY---~~~~~~~L~~tl~~lL~~~~~~ 247 (335)
.....+||+|++.. +.. +.+....+++.+.++|+|+|..
T Consensus 65 -----------~~~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l 107 (112)
T PF12847_consen 65 -----------PDFLEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRL 107 (112)
T ss_dssp -----------TTTSSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEE
T ss_pred -----------cccCCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEE
Confidence 11234799999998 332 1245678899999999998743
No 8
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.42 E-value=3.2e-12 Score=120.15 Aligned_cols=126 Identities=16% Similarity=0.209 Sum_probs=90.3
Q ss_pred CceeEEEecccccCCCCccceeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCC-EEEEecCchHHH
Q 019839 77 RCFNVTIQHNITSLIPSVGLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAW-TVFLTDHGNYIL 155 (335)
Q Consensus 77 ~~~~i~i~~~~~~~~~~~G~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~-~V~~TD~~~~~l 155 (335)
....|.|.++|+ .|.=.-+.+.+-.++|.+. ..+|++|||+|||+|++||+++++|+ +|+++|++|.++
T Consensus 128 ~~~~I~idPg~A-----FGTG~H~TT~lcl~~l~~~-----~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av 197 (295)
T PF06325_consen 128 DEIVIEIDPGMA-----FGTGHHPTTRLCLELLEKY-----VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAV 197 (295)
T ss_dssp TSEEEEESTTSS-----S-SSHCHHHHHHHHHHHHH-----SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHH
T ss_pred CcEEEEECCCCc-----ccCCCCHHHHHHHHHHHHh-----ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHH
Confidence 456788888887 3333445777777777765 36889999999999999999999975 899999999999
Q ss_pred HHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHH
Q 019839 156 DNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFH 235 (335)
Q Consensus 156 ~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~ 235 (335)
+.++.|++.|+.. .++.+. ...+. ..++||+|+|. |. .+..-.++.
T Consensus 198 ~~a~~N~~~N~~~----~~~~v~---~~~~~------------------------~~~~~dlvvAN--I~-~~vL~~l~~ 243 (295)
T PF06325_consen 198 EAARENAELNGVE----DRIEVS---LSEDL------------------------VEGKFDLVVAN--IL-ADVLLELAP 243 (295)
T ss_dssp HHHHHHHHHTT-T----TCEEES---CTSCT------------------------CCS-EEEEEEE--S--HHHHHHHHH
T ss_pred HHHHHHHHHcCCC----eeEEEE---Eeccc------------------------ccccCCEEEEC--CC-HHHHHHHHH
Confidence 9999999999863 345442 11110 12589999984 11 123345778
Q ss_pred HHHHhccCCCc
Q 019839 236 TLKRLMPLGSK 246 (335)
Q Consensus 236 tl~~lL~~~~~ 246 (335)
.+.++|+++|.
T Consensus 244 ~~~~~l~~~G~ 254 (295)
T PF06325_consen 244 DIASLLKPGGY 254 (295)
T ss_dssp HCHHHEEEEEE
T ss_pred HHHHhhCCCCE
Confidence 88889998874
No 9
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.39 E-value=7.3e-13 Score=120.12 Aligned_cols=113 Identities=15% Similarity=0.263 Sum_probs=86.7
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839 118 DFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA 197 (335)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~ 197 (335)
.+-|++|||+|||+||+|..+|+.|++|++.|.++++++.++.....+-.. ...+ +..+...+...
T Consensus 87 ~~~g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~---~~~~-~y~l~~~~~~~---------- 152 (282)
T KOG1270|consen 87 PLLGMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVL---EGAI-AYRLEYEDTDV---------- 152 (282)
T ss_pred ccCCceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchh---cccc-ceeeehhhcch----------
Confidence 356799999999999999999999999999999999999998875444322 1211 12232222211
Q ss_pred cccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcceeeceEEEEEEeeec
Q 019839 198 SQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLVNMVLYLALEKRY 262 (335)
Q Consensus 198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~~~~p~i~ia~~~R~ 262 (335)
....++||.|+|++|+.|..+...+++.+.++|+|+|. +||+..+|.
T Consensus 153 -----------E~~~~~fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~-------lfittinrt 199 (282)
T KOG1270|consen 153 -----------EGLTGKFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGR-------LFITTINRT 199 (282)
T ss_pred -----------hhcccccceeeeHHHHHHHhCHHHHHHHHHHHhCCCCc-------eEeeehhhh
Confidence 01234699999999999999999999999999999874 677777774
No 10
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.39 E-value=1.9e-11 Score=106.92 Aligned_cols=109 Identities=21% Similarity=0.277 Sum_probs=84.6
Q ss_pred HHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEecc
Q 019839 102 ELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLN 181 (335)
Q Consensus 102 a~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ld 181 (335)
+.+|.+++. ..++++|||||||+|..++.+++.+.+|+++|+++.+++.+++|+..|+ .++.+...|
T Consensus 8 ~~~l~~~l~-------~~~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~------~~~~~~~~d 74 (179)
T TIGR00537 8 SLLLEANLR-------ELKPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNN------VGLDVVMTD 74 (179)
T ss_pred HHHHHHHHH-------hcCCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcC------CceEEEEcc
Confidence 455666652 3567899999999999999999998899999999999999999999876 246667777
Q ss_pred CCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcc---------------------cHHHHHHHHHHh
Q 019839 182 WMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDD---------------------LTDALFHTLKRL 240 (335)
Q Consensus 182 W~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~---------------------~~~~L~~tl~~l 240 (335)
+.+.. .++||+|+++..++... ....+++.+.++
T Consensus 75 ~~~~~-------------------------~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 129 (179)
T TIGR00537 75 LFKGV-------------------------RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEI 129 (179)
T ss_pred ccccc-------------------------CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHh
Confidence 65431 23799999987665332 146789999999
Q ss_pred ccCCCcce
Q 019839 241 MPLGSKKV 248 (335)
Q Consensus 241 L~~~~~~~ 248 (335)
|+++|..+
T Consensus 130 Lk~gG~~~ 137 (179)
T TIGR00537 130 LKEGGRVQ 137 (179)
T ss_pred hCCCCEEE
Confidence 99988543
No 11
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=4.8e-12 Score=118.29 Aligned_cols=131 Identities=18% Similarity=0.255 Sum_probs=91.1
Q ss_pred CceeEEEecccccCCCCccceeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCC-EEEEecCchHHH
Q 019839 77 RCFNVTIQHNITSLIPSVGLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAW-TVFLTDHGNYIL 155 (335)
Q Consensus 77 ~~~~i~i~~~~~~~~~~~G~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~-~V~~TD~~~~~l 155 (335)
+...|.|.++++- ++| .-+.+.+-.++|... ..+|++|||+|||+|+++|+++++|+ +|+++|++|.++
T Consensus 129 ~~~~i~lDPGlAF---GTG--~HpTT~lcL~~Le~~-----~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV 198 (300)
T COG2264 129 DELNIELDPGLAF---GTG--THPTTSLCLEALEKL-----LKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAV 198 (300)
T ss_pred CceEEEEcccccc---CCC--CChhHHHHHHHHHHh-----hcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHH
Confidence 3556778888873 233 334555555665543 36999999999999999999999986 699999999999
Q ss_pred HHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHH
Q 019839 156 DNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFH 235 (335)
Q Consensus 156 ~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~ 235 (335)
+.++.|+++|+... .+.+... ... .....++||+|+|. | --+.+..|..
T Consensus 199 ~aa~eNa~~N~v~~----~~~~~~~---~~~---------------------~~~~~~~~DvIVAN--I-LA~vl~~La~ 247 (300)
T COG2264 199 EAARENARLNGVEL----LVQAKGF---LLL---------------------EVPENGPFDVIVAN--I-LAEVLVELAP 247 (300)
T ss_pred HHHHHHHHHcCCch----hhhcccc---cch---------------------hhcccCcccEEEeh--h-hHHHHHHHHH
Confidence 99999999998521 1111111 110 11233599999994 1 1233447888
Q ss_pred HHHHhccCCCcce
Q 019839 236 TLKRLMPLGSKKV 248 (335)
Q Consensus 236 tl~~lL~~~~~~~ 248 (335)
-+.++++|+|..+
T Consensus 248 ~~~~~lkpgg~lI 260 (300)
T COG2264 248 DIKRLLKPGGRLI 260 (300)
T ss_pred HHHHHcCCCceEE
Confidence 9999999988543
No 12
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.37 E-value=5.5e-12 Score=120.24 Aligned_cols=101 Identities=17% Similarity=0.169 Sum_probs=82.5
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcc
Q 019839 119 FNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS 198 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~ 198 (335)
++|.+|||+|||+|..++.+++.|.+|++.|.++++++.++.++..+.. ..++.+...+-.+.
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~----~~~i~~~~~dae~l------------- 192 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPV----TSTIEYLCTTAEKL------------- 192 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCc----ccceeEEecCHHHh-------------
Confidence 5788999999999999999999999999999999999999988766542 23455555442221
Q ss_pred ccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCc
Q 019839 199 QERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSK 246 (335)
Q Consensus 199 ~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~ 246 (335)
....++||+|++.+|++|....+.+++.+.++|+|||.
T Consensus 193 ----------~~~~~~FD~Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~ 230 (322)
T PLN02396 193 ----------ADEGRKFDAVLSLEVIEHVANPAEFCKSLSALTIPNGA 230 (322)
T ss_pred ----------hhccCCCCEEEEhhHHHhcCCHHHHHHHHHHHcCCCcE
Confidence 01235899999999999999999999999999999884
No 13
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.36 E-value=1.2e-11 Score=109.97 Aligned_cols=102 Identities=16% Similarity=0.143 Sum_probs=82.9
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839 118 DFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA 197 (335)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~ 197 (335)
..++.+|||+|||+|..++.+|+.|.+|++.|+++.+++.+++++..++. .++.+...|+.+..
T Consensus 28 ~~~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~-----~~v~~~~~d~~~~~----------- 91 (197)
T PRK11207 28 VVKPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENL-----DNLHTAVVDLNNLT----------- 91 (197)
T ss_pred cCCCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCC-----CcceEEecChhhCC-----------
Confidence 35678999999999999999999999999999999999999999887653 34666666654321
Q ss_pred cccccccCcchhhccCCccEEEEeccccCc--ccHHHHHHHHHHhccCCCcce
Q 019839 198 SQERYSWNSSELKEVQRASVLLAADVIYSD--DLTDALFHTLKRLMPLGSKKV 248 (335)
Q Consensus 198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~~--~~~~~L~~tl~~lL~~~~~~~ 248 (335)
..++||+|+++.++|+. +....+++.+.++|+++|..+
T Consensus 92 -------------~~~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~ 131 (197)
T PRK11207 92 -------------FDGEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNL 131 (197)
T ss_pred -------------cCCCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEE
Confidence 12379999999998764 467899999999999998643
No 14
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.34 E-value=2.2e-11 Score=121.35 Aligned_cols=159 Identities=16% Similarity=0.168 Sum_probs=106.1
Q ss_pred eeehh-HHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCee
Q 019839 97 QVWKA-ELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSV 175 (335)
Q Consensus 97 ~vW~a-a~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v 175 (335)
|+.+. +..|.+.+.... ...++.+|||||||+|..++.+|+.+++|+++|.++.+++.+++|+..|+. .++
T Consensus 276 q~n~~~~e~l~~~vl~~l---~~~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~-----~~v 347 (443)
T PRK13168 276 QVNAQVNQKMVARALEWL---DPQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGL-----DNV 347 (443)
T ss_pred EcCHHHHHHHHHHHHHHh---cCCCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCC-----Cce
Confidence 44443 466777776653 335678999999999999999999999999999999999999999999873 468
Q ss_pred EEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcceeeceEEE
Q 019839 176 HVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLVNMVLY 255 (335)
Q Consensus 176 ~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~~~~p~i~ 255 (335)
.+...|+.+..... .....+||+|++ |.=|.- ....++.|.+ ...+.+ +|
T Consensus 348 ~~~~~d~~~~l~~~-------------------~~~~~~fD~Vi~-dPPr~g--~~~~~~~l~~---~~~~~i-----vy 397 (443)
T PRK13168 348 TFYHANLEEDFTDQ-------------------PWALGGFDKVLL-DPPRAG--AAEVMQALAK---LGPKRI-----VY 397 (443)
T ss_pred EEEEeChHHhhhhh-------------------hhhcCCCCEEEE-CcCCcC--hHHHHHHHHh---cCCCeE-----EE
Confidence 88888876532110 001246999987 322321 2233444444 344557 99
Q ss_pred EEEeeeccccccchhhhhhhhhHHHHHHhhhhcccccccccCCCeeeEEecCCC-CCccccccCC
Q 019839 256 LALEKRYNFSLNDLDVVANGYSHFRSYIMEEGEHRRFERESFPAFVGKCIDLNE-FPQYVREYDR 319 (335)
Q Consensus 256 ia~~~R~~ft~~~~d~v~~~~~~f~~~l~~~~~~~~~~~~~~~~f~v~~i~~~~-~pq~~~~yer 319 (335)
++|. +...+.....+.. .||+++++.+.| |||.. |.|-
T Consensus 398 vSCn---------p~tlaRDl~~L~~----------------~gY~l~~i~~~DmFP~T~-HvE~ 436 (443)
T PRK13168 398 VSCN---------PATLARDAGVLVE----------------AGYRLKRAGMLDMFPHTG-HVES 436 (443)
T ss_pred EEeC---------hHHhhccHHHHhh----------------CCcEEEEEEEeccCCCCC-cEEE
Confidence 9982 2233333222221 478888886555 99987 5554
No 15
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.32 E-value=1.1e-11 Score=113.14 Aligned_cols=124 Identities=17% Similarity=0.235 Sum_probs=102.6
Q ss_pred CccceeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh-C-CEEEEecCchHHHHHHHHHHHHccCCCC
Q 019839 93 SVGLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV-A-WTVFLTDHGNYILDNCAKNVQLNSGVFS 170 (335)
Q Consensus 93 ~~G~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~-~-~~V~~TD~~~~~l~~~~~Nv~~N~~~~~ 170 (335)
..|.+.--.+++|+.|+. ....++|||||||+|++||++|+. . ++|++.++.+.+.+++++|++.|..
T Consensus 24 ~~~~~~~~DaiLL~~~~~-------~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l--- 93 (248)
T COG4123 24 RCGFRYGTDAILLAAFAP-------VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPL--- 93 (248)
T ss_pred CCccccccHHHHHHhhcc-------cccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcc---
Confidence 357777779999999973 334889999999999999999988 4 7999999999999999999999886
Q ss_pred CCCeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcc------------------cHHH
Q 019839 171 HQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDD------------------LTDA 232 (335)
Q Consensus 171 ~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~------------------~~~~ 232 (335)
..++++...|..+..... ...+||+|++.-..|... .++.
T Consensus 94 -~~ri~v~~~Di~~~~~~~---------------------~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~ 151 (248)
T COG4123 94 -EERIQVIEADIKEFLKAL---------------------VFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLED 151 (248)
T ss_pred -hhceeEehhhHHHhhhcc---------------------cccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHH
Confidence 578999998877653321 223799999998888753 2788
Q ss_pred HHHHHHHhccCCCcce
Q 019839 233 LFHTLKRLMPLGSKKV 248 (335)
Q Consensus 233 L~~tl~~lL~~~~~~~ 248 (335)
++++..++|+++|...
T Consensus 152 ~i~~a~~~lk~~G~l~ 167 (248)
T COG4123 152 LIRAAAKLLKPGGRLA 167 (248)
T ss_pred HHHHHHHHccCCCEEE
Confidence 9999999999998643
No 16
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.31 E-value=2e-11 Score=103.81 Aligned_cols=100 Identities=16% Similarity=0.220 Sum_probs=85.0
Q ss_pred CCCeEEEEcCccCHHHHHHH-Hh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCC
Q 019839 120 NGIISLELGAGTGLAGILLS-RV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS 196 (335)
Q Consensus 120 ~g~~VLELG~GtGL~gl~la-~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~ 196 (335)
++.+|||||||+|..++.++ +. +++|++.|+++.+++.++.+++.++ ..++++...|+.+. +..
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~-----~~ni~~~~~d~~~l-~~~------- 69 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELG-----LDNIEFIQGDIEDL-PQE------- 69 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTT-----STTEEEEESBTTCG-CGC-------
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccc-----ccccceEEeehhcc-ccc-------
Confidence 57899999999999999999 44 6799999999999999999998877 34799999998873 210
Q ss_pred ccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCc
Q 019839 197 ASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSK 246 (335)
Q Consensus 197 ~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~ 246 (335)
. ..+||+|++..++|+......+++.+.++|+++|.
T Consensus 70 ------------~--~~~~D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~ 105 (152)
T PF13847_consen 70 ------------L--EEKFDIIISNGVLHHFPDPEKVLKNIIRLLKPGGI 105 (152)
T ss_dssp ------------S--STTEEEEEEESTGGGTSHHHHHHHHHHHHEEEEEE
T ss_pred ------------c--CCCeeEEEEcCchhhccCHHHHHHHHHHHcCCCcE
Confidence 0 15899999999999999999999999999999873
No 17
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.29 E-value=4.4e-11 Score=106.28 Aligned_cols=100 Identities=12% Similarity=0.106 Sum_probs=79.3
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcc
Q 019839 119 FNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS 198 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~ 198 (335)
.++.+|||+|||+|..++.+|+.|.+|+++|+++.+++.+++++..++. ++.+...|.....
T Consensus 29 ~~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~------~v~~~~~d~~~~~------------ 90 (195)
T TIGR00477 29 VAPCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENL------PLRTDAYDINAAA------------ 90 (195)
T ss_pred CCCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCC------CceeEeccchhcc------------
Confidence 4567999999999999999999999999999999999999998877652 2444444432210
Q ss_pred ccccccCcchhhccCCccEEEEeccccCc--ccHHHHHHHHHHhccCCCcce
Q 019839 199 QERYSWNSSELKEVQRASVLLAADVIYSD--DLTDALFHTLKRLMPLGSKKV 248 (335)
Q Consensus 199 ~~~~~w~~~~~~~~~~fDlIlasDviY~~--~~~~~L~~tl~~lL~~~~~~~ 248 (335)
...+||+|+++.++++. +....+++.+.++|+|||..+
T Consensus 91 ------------~~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ll 130 (195)
T TIGR00477 91 ------------LNEDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNL 130 (195)
T ss_pred ------------ccCCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEE
Confidence 12379999999998764 567789999999999988543
No 18
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.26 E-value=2.6e-11 Score=112.09 Aligned_cols=103 Identities=14% Similarity=0.143 Sum_probs=84.6
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcc
Q 019839 119 FNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS 198 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~ 198 (335)
-++.+|||+|||+|..++.+++.+.+|+++|+++++++.+++++..++. ..++.+...+..+..+
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~----~~~v~~~~~d~~~l~~----------- 107 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGV----SDNMQFIHCAAQDIAQ----------- 107 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCC----ccceEEEEcCHHHHhh-----------
Confidence 3567999999999999999999999999999999999999999887653 2456666655543210
Q ss_pred ccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcc
Q 019839 199 QERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKK 247 (335)
Q Consensus 199 ~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~ 247 (335)
...+.||+|++..++++......+++.+.++|+|+|..
T Consensus 108 -----------~~~~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l 145 (255)
T PRK11036 108 -----------HLETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGAL 145 (255)
T ss_pred -----------hcCCCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEE
Confidence 01358999999999999888899999999999998854
No 19
>PLN02244 tocopherol O-methyltransferase
Probab=99.26 E-value=1.1e-10 Score=112.40 Aligned_cols=103 Identities=12% Similarity=0.013 Sum_probs=86.2
Q ss_pred CCCCeEEEEcCccCHHHHHHHHh-CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839 119 FNGIISLELGAGTGLAGILLSRV-AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA 197 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~la~~-~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~ 197 (335)
.++.+|||+|||+|..++.+++. +.+|+++|+++.+++.+++++..++. ..++.+...|..+..-
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~----~~~v~~~~~D~~~~~~---------- 182 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGL----SDKVSFQVADALNQPF---------- 182 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCC----CCceEEEEcCcccCCC----------
Confidence 46789999999999999999886 78999999999999999999887753 3467777777654310
Q ss_pred cccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839 198 SQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV 248 (335)
Q Consensus 198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~ 248 (335)
..+.||+|++..++++......+++.+.++|+|||..+
T Consensus 183 -------------~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lv 220 (340)
T PLN02244 183 -------------EDGQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRII 220 (340)
T ss_pred -------------CCCCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEE
Confidence 23589999999999998889999999999999998644
No 20
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.25 E-value=3.1e-10 Score=106.89 Aligned_cols=126 Identities=16% Similarity=0.272 Sum_probs=88.1
Q ss_pred eeEEEecccccCCCCccceeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhC-CEEEEecCchHHHHH
Q 019839 79 FNVTIQHNITSLIPSVGLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDN 157 (335)
Q Consensus 79 ~~i~i~~~~~~~~~~~G~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~-~~V~~TD~~~~~l~~ 157 (335)
..+.|.++++ .|.-..+...+..+++... ..+|++|||+|||+|..++.+++.| .+|+++|+++.+++.
T Consensus 128 ~~i~ldpg~a-----FgtG~h~tt~l~l~~l~~~-----~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~ 197 (288)
T TIGR00406 128 LIIMLDPGLA-----FGTGTHPTTSLCLEWLEDL-----DLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVES 197 (288)
T ss_pred EEEEECCCCc-----ccCCCCHHHHHHHHHHHhh-----cCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHH
Confidence 4556666654 3333445555555655443 2578999999999999999999886 489999999999999
Q ss_pred HHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHH
Q 019839 158 CAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTL 237 (335)
Q Consensus 158 ~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl 237 (335)
+++|+..|... ..+.+...+-.. ...++||+|++.- + ......++..+
T Consensus 198 a~~n~~~n~~~----~~~~~~~~~~~~-------------------------~~~~~fDlVvan~-~--~~~l~~ll~~~ 245 (288)
T TIGR00406 198 ARKNAELNQVS----DRLQVKLIYLEQ-------------------------PIEGKADVIVANI-L--AEVIKELYPQF 245 (288)
T ss_pred HHHHHHHcCCC----cceEEEeccccc-------------------------ccCCCceEEEEec-C--HHHHHHHHHHH
Confidence 99999998742 234443332110 0124899999852 2 23445788899
Q ss_pred HHhccCCCc
Q 019839 238 KRLMPLGSK 246 (335)
Q Consensus 238 ~~lL~~~~~ 246 (335)
.++|+++|.
T Consensus 246 ~~~LkpgG~ 254 (288)
T TIGR00406 246 SRLVKPGGW 254 (288)
T ss_pred HHHcCCCcE
Confidence 999999884
No 21
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.24 E-value=4.4e-11 Score=92.14 Aligned_cols=92 Identities=18% Similarity=0.213 Sum_probs=74.4
Q ss_pred EEEcCccCHHHHHHHHh-CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCccccccc
Q 019839 125 LELGAGTGLAGILLSRV-AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQERYS 203 (335)
Q Consensus 125 LELG~GtGL~gl~la~~-~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~ 203 (335)
||+|||+|..+..+++. +.+|+++|.++.+++.++++...+ .+.+...+..+..-
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~--------~~~~~~~d~~~l~~---------------- 56 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE--------GVSFRQGDAEDLPF---------------- 56 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS--------TEEEEESBTTSSSS----------------
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc--------CchheeehHHhCcc----------------
Confidence 89999999999999999 899999999999999999877543 24466666555411
Q ss_pred cCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcc
Q 019839 204 WNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKK 247 (335)
Q Consensus 204 w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~ 247 (335)
..+.||+|++..++++.+....+++.+.++|+++|..
T Consensus 57 -------~~~sfD~v~~~~~~~~~~~~~~~l~e~~rvLk~gG~l 93 (95)
T PF08241_consen 57 -------PDNSFDVVFSNSVLHHLEDPEAALREIYRVLKPGGRL 93 (95)
T ss_dssp --------TT-EEEEEEESHGGGSSHHHHHHHHHHHHEEEEEEE
T ss_pred -------ccccccccccccceeeccCHHHHHHHHHHHcCcCeEE
Confidence 2458999999999999999999999999999998843
No 22
>PRK14968 putative methyltransferase; Provisional
Probab=99.22 E-value=1.9e-10 Score=100.57 Aligned_cols=118 Identities=19% Similarity=0.307 Sum_probs=88.6
Q ss_pred eeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeE
Q 019839 97 QVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVH 176 (335)
Q Consensus 97 ~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~ 176 (335)
.-|+.+.+|++++.. .++++|||+|||+|..++.++..+.+|+++|+++++++.+++|+..|... ...+.
T Consensus 7 ~p~~~~~~l~~~~~~-------~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~---~~~~~ 76 (188)
T PRK14968 7 EPAEDSFLLAENAVD-------KKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIR---NNGVE 76 (188)
T ss_pred CcchhHHHHHHhhhc-------cCCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCC---CcceE
Confidence 345667777777632 57789999999999999999999999999999999999999999887642 11266
Q ss_pred EEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccC---------------------cccHHHHHH
Q 019839 177 VRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYS---------------------DDLTDALFH 235 (335)
Q Consensus 177 v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~---------------------~~~~~~L~~ 235 (335)
+...|+.+... ...||+|++...++. ......+++
T Consensus 77 ~~~~d~~~~~~------------------------~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 132 (188)
T PRK14968 77 VIRSDLFEPFR------------------------GDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLD 132 (188)
T ss_pred EEecccccccc------------------------ccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHH
Confidence 66666654311 127999998765543 122566899
Q ss_pred HHHHhccCCCcce
Q 019839 236 TLKRLMPLGSKKV 248 (335)
Q Consensus 236 tl~~lL~~~~~~~ 248 (335)
.+.++|+++|..+
T Consensus 133 ~~~~~Lk~gG~~~ 145 (188)
T PRK14968 133 EVGRYLKPGGRIL 145 (188)
T ss_pred HHHHhcCCCeEEE
Confidence 9999999988543
No 23
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.22 E-value=1.8e-10 Score=109.43 Aligned_cols=119 Identities=15% Similarity=0.190 Sum_probs=85.3
Q ss_pred eehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCC-EEEEecCchHHHHHHHHHHHHccCCCCCCCeeE
Q 019839 98 VWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAW-TVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVH 176 (335)
Q Consensus 98 vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~-~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~ 176 (335)
-|.+-+.....+.+. ...+|++|||+|||+|...+.++..|. .|++.|.++.++..++..-..-.. ..++.
T Consensus 103 e~~s~~~~~~~l~~l----~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~----~~~v~ 174 (314)
T TIGR00452 103 EWRSDIKWDRVLPHL----SPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDN----DKRAI 174 (314)
T ss_pred HHHHHHHHHHHHHhc----CCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhcc----CCCeE
Confidence 465555544444332 457899999999999999888888864 799999999888654322211110 23455
Q ss_pred EEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839 177 VRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV 248 (335)
Q Consensus 177 v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~ 248 (335)
+..++..+.. ....||+|++..++||......+++.+++.|++||..+
T Consensus 175 ~~~~~ie~lp------------------------~~~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lv 222 (314)
T TIGR00452 175 LEPLGIEQLH------------------------ELYAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELV 222 (314)
T ss_pred EEECCHHHCC------------------------CCCCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEE
Confidence 6555543321 12379999999999999999999999999999998755
No 24
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.21 E-value=1.3e-10 Score=109.29 Aligned_cols=99 Identities=14% Similarity=0.159 Sum_probs=80.6
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcc
Q 019839 119 FNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS 198 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~ 198 (335)
.++.+|||+|||+|..++.+++.|.+|+++|+++.+++.++.|+..++. ++.+...|.....
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l------~v~~~~~D~~~~~------------ 180 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENL------NIRTGLYDINSAS------------ 180 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC------ceEEEEechhccc------------
Confidence 4567999999999999999999999999999999999999999987752 4555555543321
Q ss_pred ccccccCcchhhccCCccEEEEeccccCc--ccHHHHHHHHHHhccCCCcc
Q 019839 199 QERYSWNSSELKEVQRASVLLAADVIYSD--DLTDALFHTLKRLMPLGSKK 247 (335)
Q Consensus 199 ~~~~~w~~~~~~~~~~fDlIlasDviY~~--~~~~~L~~tl~~lL~~~~~~ 247 (335)
..++||+|++..++++. +....+++.+.++|+++|..
T Consensus 181 ------------~~~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~ 219 (287)
T PRK12335 181 ------------IQEEYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYN 219 (287)
T ss_pred ------------ccCCccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEE
Confidence 13489999999998864 46788999999999998854
No 25
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.20 E-value=2.3e-10 Score=100.57 Aligned_cols=96 Identities=14% Similarity=0.161 Sum_probs=75.9
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhC--CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCC
Q 019839 119 FNGIISLELGAGTGLAGILLSRVA--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS 196 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~la~~~--~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~ 196 (335)
++|++|||+|||+|..++.+|..+ .+|++.|.++.+++.+++|++.++. .++.+...|+.+..
T Consensus 41 ~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~-----~~i~~i~~d~~~~~---------- 105 (181)
T TIGR00138 41 LDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGL-----NNVEIVNGRAEDFQ---------- 105 (181)
T ss_pred cCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCC-----CCeEEEecchhhcc----------
Confidence 468999999999999999988764 6899999999999999999988762 35778777765421
Q ss_pred ccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcc
Q 019839 197 ASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKK 247 (335)
Q Consensus 197 ~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~ 247 (335)
..++||+|++.- + ...+.+++.+.++|+++|..
T Consensus 106 --------------~~~~fD~I~s~~-~---~~~~~~~~~~~~~LkpgG~l 138 (181)
T TIGR00138 106 --------------HEEQFDVITSRA-L---ASLNVLLELTLNLLKVGGYF 138 (181)
T ss_pred --------------ccCCccEEEehh-h---hCHHHHHHHHHHhcCCCCEE
Confidence 134899998743 2 34566888999999998843
No 26
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.20 E-value=3.1e-10 Score=108.53 Aligned_cols=120 Identities=17% Similarity=0.204 Sum_probs=86.2
Q ss_pred eeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhC-CEEEEecCchHHHHHHHHHHHHccCCCCCCCee
Q 019839 97 QVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSV 175 (335)
Q Consensus 97 ~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~-~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v 175 (335)
.-|++-+... .+.... ..++|++|||+|||+|..++.++..| ..|++.|.++.++...+........ ..++
T Consensus 103 ~ew~s~~k~~-~l~~~l---~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~----~~~i 174 (322)
T PRK15068 103 TEWRSDWKWD-RVLPHL---SPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGN----DQRA 174 (322)
T ss_pred ceehHHhHHH-HHHHhh---CCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCC----CCCe
Confidence 3566544433 233332 45789999999999999999999886 4799999998777543332222111 2457
Q ss_pred EEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839 176 HVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV 248 (335)
Q Consensus 176 ~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~ 248 (335)
.+...+..+.. ....||+|++..++||......+++.+.+.|++||..+
T Consensus 175 ~~~~~d~e~lp------------------------~~~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lv 223 (322)
T PRK15068 175 HLLPLGIEQLP------------------------ALKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELV 223 (322)
T ss_pred EEEeCCHHHCC------------------------CcCCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEE
Confidence 77776655431 13479999999999999999999999999999988654
No 27
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.19 E-value=3.9e-10 Score=99.64 Aligned_cols=95 Identities=18% Similarity=0.103 Sum_probs=76.7
Q ss_pred CCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839 120 NGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA 197 (335)
Q Consensus 120 ~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~ 197 (335)
++.+|||+|||+|..++.+++. +.+|+++|.++.+++.+++|++.|+. .++++...+..+..
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l-----~~i~~~~~d~~~~~----------- 108 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGL-----KNVTVVHGRAEEFG----------- 108 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCC-----CCEEEEeccHhhCC-----------
Confidence 3899999999999999999875 57999999999999999999999873 34777777654421
Q ss_pred cccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcc
Q 019839 198 SQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKK 247 (335)
Q Consensus 198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~ 247 (335)
..++||+|++.. ....+.+++.+.++|+++|..
T Consensus 109 -------------~~~~fDlV~~~~----~~~~~~~l~~~~~~LkpGG~l 141 (187)
T PRK00107 109 -------------QEEKFDVVTSRA----VASLSDLVELCLPLLKPGGRF 141 (187)
T ss_pred -------------CCCCccEEEEcc----ccCHHHHHHHHHHhcCCCeEE
Confidence 134899999864 245678999999999998854
No 28
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.19 E-value=4.3e-10 Score=109.32 Aligned_cols=100 Identities=18% Similarity=0.204 Sum_probs=76.0
Q ss_pred CCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcc
Q 019839 121 GIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS 198 (335)
Q Consensus 121 g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~ 198 (335)
+.+|||||||+|.+|+.+++. +.+|+++|.++.+++.++.|++.|.... ..++.+..-|.....
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~--~~~v~~~~~D~l~~~------------ 294 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEA--LDRCEFMINNALSGV------------ 294 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCccc--CceEEEEEccccccC------------
Confidence 469999999999999999987 4799999999999999999999996321 124555544433221
Q ss_pred ccccccCcchhhccCCccEEEEeccccCc-----ccHHHHHHHHHHhccCCCc
Q 019839 199 QERYSWNSSELKEVQRASVLLAADVIYSD-----DLTDALFHTLKRLMPLGSK 246 (335)
Q Consensus 199 ~~~~~w~~~~~~~~~~fDlIlasDviY~~-----~~~~~L~~tl~~lL~~~~~ 246 (335)
...+||+|++.-.++.. .....+++...++|+++|.
T Consensus 295 ------------~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~ 335 (378)
T PRK15001 295 ------------EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGE 335 (378)
T ss_pred ------------CCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCE
Confidence 12479999997666543 2456788999999999884
No 29
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.18 E-value=1.1e-09 Score=101.02 Aligned_cols=123 Identities=18% Similarity=0.218 Sum_probs=88.8
Q ss_pred CceeEEEecccccCCCCccceeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCC-EEEEecCchHHH
Q 019839 77 RCFNVTIQHNITSLIPSVGLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAW-TVFLTDHGNYIL 155 (335)
Q Consensus 77 ~~~~i~i~~~~~~~~~~~G~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~-~V~~TD~~~~~l 155 (335)
....+.|.++++ .|.-..+.+..+.+++... ..++++|||+|||+|..++.+++.|. +|+++|+++.++
T Consensus 86 ~~~~i~i~p~~a-----fgtg~h~tt~~~l~~l~~~-----~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l 155 (250)
T PRK00517 86 DEINIELDPGMA-----FGTGTHPTTRLCLEALEKL-----VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAV 155 (250)
T ss_pred CeEEEEECCCCc-----cCCCCCHHHHHHHHHHHhh-----cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHH
Confidence 445677777765 3333366777777777653 25789999999999999999998875 599999999999
Q ss_pred HHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHH
Q 019839 156 DNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFH 235 (335)
Q Consensus 156 ~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~ 235 (335)
+.+++|+..|+.. ..+.+... ..+||+|++.- .......++.
T Consensus 156 ~~A~~n~~~~~~~----~~~~~~~~-------------------------------~~~fD~Vvani---~~~~~~~l~~ 197 (250)
T PRK00517 156 EAARENAELNGVE----LNVYLPQG-------------------------------DLKADVIVANI---LANPLLELAP 197 (250)
T ss_pred HHHHHHHHHcCCC----ceEEEccC-------------------------------CCCcCEEEEcC---cHHHHHHHHH
Confidence 9999999988731 22221100 11699999852 1234567888
Q ss_pred HHHHhccCCCcc
Q 019839 236 TLKRLMPLGSKK 247 (335)
Q Consensus 236 tl~~lL~~~~~~ 247 (335)
.+.++|+++|..
T Consensus 198 ~~~~~LkpgG~l 209 (250)
T PRK00517 198 DLARLLKPGGRL 209 (250)
T ss_pred HHHHhcCCCcEE
Confidence 999999998843
No 30
>PRK14967 putative methyltransferase; Provisional
Probab=99.18 E-value=4.6e-10 Score=101.71 Aligned_cols=113 Identities=19% Similarity=0.208 Sum_probs=84.5
Q ss_pred hHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCC-EEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEe
Q 019839 101 AELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAW-TVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRD 179 (335)
Q Consensus 101 aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~-~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ 179 (335)
.+.+|++++... ...++.+|||+|||+|..++.+++.+. +|+++|+++.+++.++.|+..|+ .++.+..
T Consensus 21 ds~~l~~~l~~~----~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~------~~~~~~~ 90 (223)
T PRK14967 21 DTQLLADALAAE----GLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAG------VDVDVRR 90 (223)
T ss_pred cHHHHHHHHHhc----ccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhC------CeeEEEE
Confidence 456777777543 335678999999999999999998865 99999999999999999998875 2466677
Q ss_pred ccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcc---------------------cHHHHHHHHH
Q 019839 180 LNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDD---------------------LTDALFHTLK 238 (335)
Q Consensus 180 ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~---------------------~~~~L~~tl~ 238 (335)
.|+.+.. ...+||+|++.-..+... ..+.+++.+.
T Consensus 91 ~d~~~~~------------------------~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~ 146 (223)
T PRK14967 91 GDWARAV------------------------EFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAP 146 (223)
T ss_pred Cchhhhc------------------------cCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHH
Confidence 7765431 124799999864433211 1456788889
Q ss_pred HhccCCCcc
Q 019839 239 RLMPLGSKK 247 (335)
Q Consensus 239 ~lL~~~~~~ 247 (335)
++|+++|..
T Consensus 147 ~~Lk~gG~l 155 (223)
T PRK14967 147 ALLAPGGSL 155 (223)
T ss_pred HhcCCCcEE
Confidence 999998853
No 31
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.18 E-value=1e-09 Score=104.48 Aligned_cols=97 Identities=14% Similarity=0.165 Sum_probs=70.0
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839 118 DFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA 197 (335)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~ 197 (335)
..++.+|||||||+|..++.+++.|.+|+++|+++.|++.+++|+...........++.+...|+.+.
T Consensus 142 ~~~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l------------ 209 (315)
T PLN02585 142 SLAGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL------------ 209 (315)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc------------
Confidence 35788999999999999999999999999999999999999999865421100012345555554321
Q ss_pred cccccccCcchhhccCCccEEEEeccccCccc--HHHHHHHHHHh
Q 019839 198 SQERYSWNSSELKEVQRASVLLAADVIYSDDL--TDALFHTLKRL 240 (335)
Q Consensus 198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~--~~~L~~tl~~l 240 (335)
.+.||+|++.++++|... ...+++.+.++
T Consensus 210 --------------~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~l 240 (315)
T PLN02585 210 --------------SGKYDTVTCLDVLIHYPQDKADGMIAHLASL 240 (315)
T ss_pred --------------CCCcCEEEEcCEEEecCHHHHHHHHHHHHhh
Confidence 247999999999977543 33455555544
No 32
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.17 E-value=2.7e-10 Score=111.10 Aligned_cols=136 Identities=13% Similarity=0.152 Sum_probs=92.9
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcc
Q 019839 119 FNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS 198 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~ 198 (335)
..+.+|||||||+|..|+.+|..+++|++.|+++.+++.+++|++.|+. .++.+...|..+...
T Consensus 232 ~~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~-----~~~~~~~~d~~~~~~----------- 295 (374)
T TIGR02085 232 IPVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGL-----DNLSFAALDSAKFAT----------- 295 (374)
T ss_pred cCCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCC-----CcEEEEECCHHHHHH-----------
Confidence 4578999999999999999999899999999999999999999999973 367777666543210
Q ss_pred ccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcceeeceEEEEEEeeeccccccchhhhhhhhhH
Q 019839 199 QERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLVNMVLYLALEKRYNFSLNDLDVVANGYSH 278 (335)
Q Consensus 199 ~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~~~~p~i~ia~~~R~~ft~~~~d~v~~~~~~ 278 (335)
....+||+|+. |.=|. .....+++.|.. ..++.+ +|+++. ....+.....
T Consensus 296 -----------~~~~~~D~vi~-DPPr~-G~~~~~l~~l~~---~~p~~i-----vyvsc~---------p~TlaRDl~~ 345 (374)
T TIGR02085 296 -----------AQMSAPELVLV-NPPRR-GIGKELCDYLSQ---MAPKFI-----LYSSCN---------AQTMAKDIAE 345 (374)
T ss_pred -----------hcCCCCCEEEE-CCCCC-CCcHHHHHHHHh---cCCCeE-----EEEEeC---------HHHHHHHHHH
Confidence 01135899887 33332 344455555544 334557 999982 2233333322
Q ss_pred HHHHHhhhhcccccccccCCCeeeEEecCCC-CCccccccCC
Q 019839 279 FRSYIMEEGEHRRFERESFPAFVGKCIDLNE-FPQYVREYDR 319 (335)
Q Consensus 279 f~~~l~~~~~~~~~~~~~~~~f~v~~i~~~~-~pq~~~~yer 319 (335)
+ .||+++.+.+.| |||.. |.|-
T Consensus 346 L------------------~gy~l~~~~~~DmFPqT~-HvE~ 368 (374)
T TIGR02085 346 L------------------SGYQIERVQLFDMFPHTS-HYEV 368 (374)
T ss_pred h------------------cCceEEEEEEeccCCCCC-cEEE
Confidence 2 168888875555 99987 6554
No 33
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.16 E-value=2.3e-10 Score=109.03 Aligned_cols=104 Identities=11% Similarity=0.066 Sum_probs=74.0
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcc
Q 019839 119 FNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS 198 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~ 198 (335)
.++.+|||||||+|..++.+|+.+++|++.|.++.+++.+++|++.|+. .++++...|..+...
T Consensus 172 ~~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l-----~~v~~~~~D~~~~~~----------- 235 (315)
T PRK03522 172 LPPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGL-----TNVQFQALDSTQFAT----------- 235 (315)
T ss_pred cCCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCC-----CceEEEEcCHHHHHH-----------
Confidence 4678999999999999999999999999999999999999999999873 457777666433210
Q ss_pred ccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcceeeceEEEEEEe
Q 019839 199 QERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLVNMVLYLALE 259 (335)
Q Consensus 199 ~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~~~~p~i~ia~~ 259 (335)
.....||+|+..-. + ......+++.|.+ .+.+.+ +|+++.
T Consensus 236 -----------~~~~~~D~Vv~dPP-r-~G~~~~~~~~l~~---~~~~~i-----vyvsc~ 275 (315)
T PRK03522 236 -----------AQGEVPDLVLVNPP-R-RGIGKELCDYLSQ---MAPRFI-----LYSSCN 275 (315)
T ss_pred -----------hcCCCCeEEEECCC-C-CCccHHHHHHHHH---cCCCeE-----EEEECC
Confidence 01236999987322 1 1223334444433 344557 999984
No 34
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=99.16 E-value=1.2e-11 Score=113.83 Aligned_cols=166 Identities=22% Similarity=0.253 Sum_probs=107.3
Q ss_pred ccCCCCccceeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhC-CEEEEecCchHHHHHH-HHHHHHc
Q 019839 88 TSLIPSVGLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDNC-AKNVQLN 165 (335)
Q Consensus 88 ~~~~~~~G~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~-~~V~~TD~~~~~l~~~-~~Nv~~N 165 (335)
.+.....|+++|.++..|..++....-..-.+.||+|||||||+|+.+|.+.+.| ..|.++|++.++++.. -.|+..|
T Consensus 84 ~p~vyEGg~k~wecS~dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~ 163 (282)
T KOG2920|consen 84 VPGVYEGGLKLWECSVDLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVN 163 (282)
T ss_pred CCceeecceEEeecHHHHHHHHHHHhhhheEecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecc
Confidence 4557789999999999999999865311245899999999999999999999998 7999999998888433 3444444
Q ss_pred cCCCCCCCeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHH-HHHHHHhccCC
Q 019839 166 SGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDAL-FHTLKRLMPLG 244 (335)
Q Consensus 166 ~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L-~~tl~~lL~~~ 244 (335)
..... .|.+......- ......+|.- ......+||+|++|..+|.......+ ..+...++++
T Consensus 164 ~~~~~----------~~~e~~~~~~i-----~~s~l~dg~~-~~t~~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~- 226 (282)
T KOG2920|consen 164 SHAGV----------EEKENHKVDEI-----LNSLLSDGVF-NHTERTHYDLILSSETIYSIDSLAVLYLLHRPCLLKT- 226 (282)
T ss_pred hhhhh----------hhhhcccceec-----cccccccchh-hhccccchhhhhhhhhhhCcchhhhhHhhhhhhcCCc-
Confidence 32110 01111000000 0000001200 00011389999999999999988888 4444444444
Q ss_pred CcceeeceEEEEEEeeeccccccchhhhhhhhhHHH-HHH
Q 019839 245 SKKVLVNMVLYLALEKRYNFSLNDLDVVANGYSHFR-SYI 283 (335)
Q Consensus 245 ~~~~~~~p~i~ia~~~R~~ft~~~~d~v~~~~~~f~-~~l 283 (335)
..+ +|+|.++-|. .|..+..+|+ +.+
T Consensus 227 -D~~-----~~~aAK~~yF-------gVgg~i~~f~~~~~ 253 (282)
T KOG2920|consen 227 -DGV-----FYVAAKKLYF-------GVGGGIEEFNSKLM 253 (282)
T ss_pred -cch-----hhhhhHhhcc-------CcCcchhhhccccc
Confidence 345 7888776654 5677888886 434
No 35
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.15 E-value=4.9e-10 Score=102.36 Aligned_cols=116 Identities=14% Similarity=0.080 Sum_probs=79.1
Q ss_pred ceeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh-C--CEEEEecCchHHHHHHHHHHHHccCCCCCC
Q 019839 96 LQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV-A--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQ 172 (335)
Q Consensus 96 ~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~-~--~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~ 172 (335)
.+.|+. .+.+.+ ...+|.+|||+|||||..++.+++. + .+|+++|+++.||+.+++++.... .
T Consensus 32 ~~~wr~--~~~~~~-------~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~-----~ 97 (233)
T PF01209_consen 32 DRRWRR--KLIKLL-------GLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREG-----L 97 (233)
T ss_dssp -----S--HHHHHH-------T--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT------
T ss_pred HHHHHH--HHHhcc-------CCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhC-----C
Confidence 578988 344443 3357889999999999999998876 3 589999999999999999998765 2
Q ss_pred CeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839 173 GSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV 248 (335)
Q Consensus 173 ~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~ 248 (335)
.++.....|-.+..- ....||+|+++-.+.+.++....++.+.++|+|||..+
T Consensus 98 ~~i~~v~~da~~lp~-----------------------~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ 150 (233)
T PF01209_consen 98 QNIEFVQGDAEDLPF-----------------------PDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLV 150 (233)
T ss_dssp -SEEEEE-BTTB--S------------------------TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEE
T ss_pred CCeeEEEcCHHHhcC-----------------------CCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEE
Confidence 467777766544311 23589999999999998899999999999999998654
No 36
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.14 E-value=2e-10 Score=97.46 Aligned_cols=90 Identities=18% Similarity=0.135 Sum_probs=71.8
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEE-eccCCCCCCCCccCCCCC
Q 019839 118 DFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVR-DLNWMNPWPPIFSLGNSS 196 (335)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~-~ldW~~~~~~~~~~~~~~ 196 (335)
..++++|||+|||+|..+..+++.+.+|+++|+++.+++. .+ ...... ..++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~------~~-------~~~~~~~~~~~-------------- 72 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK------RN-------VVFDNFDAQDP-------------- 72 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH------TT-------SEEEEEECHTH--------------
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh------hh-------hhhhhhhhhhh--------------
Confidence 4688999999999999999999999999999999988877 11 111111 1111
Q ss_pred ccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCc
Q 019839 197 ASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSK 246 (335)
Q Consensus 197 ~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~ 246 (335)
....++||+|++++++++......+++.+.++|+|+|.
T Consensus 73 ------------~~~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~ 110 (161)
T PF13489_consen 73 ------------PFPDGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGY 110 (161)
T ss_dssp ------------HCHSSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEE
T ss_pred ------------hccccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCE
Confidence 11245899999999999999999999999999999874
No 37
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.14 E-value=4.1e-10 Score=111.78 Aligned_cols=153 Identities=14% Similarity=0.144 Sum_probs=97.6
Q ss_pred HHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccC
Q 019839 103 LVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNW 182 (335)
Q Consensus 103 ~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW 182 (335)
..|.+.+.... ..-.+.+|||||||+|..++.+|+.+.+|++.|.++.+++.+++|+..|+ ..++.+...|+
T Consensus 278 ~~l~~~~~~~l---~~~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~-----~~nv~~~~~d~ 349 (431)
T TIGR00479 278 EKLVDRALEAL---ELQGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNG-----IANVEFLAGTL 349 (431)
T ss_pred HHHHHHHHHHh---ccCCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhC-----CCceEEEeCCH
Confidence 34445554432 22356899999999999999999999999999999999999999999987 35678877776
Q ss_pred CCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcceeeceEEEEEEeeec
Q 019839 183 MNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLVNMVLYLALEKRY 262 (335)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~~~~p~i~ia~~~R~ 262 (335)
.+..+.. ......||+|+.. .=+ ......+++.+.+ +++ +.+ +|+++.
T Consensus 350 ~~~l~~~-------------------~~~~~~~D~vi~d-PPr-~G~~~~~l~~l~~-l~~--~~i-----vyvsc~--- 397 (431)
T TIGR00479 350 ETVLPKQ-------------------PWAGQIPDVLLLD-PPR-KGCAAEVLRTIIE-LKP--ERI-----VYVSCN--- 397 (431)
T ss_pred HHHHHHH-------------------HhcCCCCCEEEEC-cCC-CCCCHHHHHHHHh-cCC--CEE-----EEEcCC---
Confidence 4421100 0012368999862 212 1224556666655 344 346 888873
Q ss_pred cccccchhhhhhhhhHHHHHHhhhhcccccccccCCCeeeEEecCCC-CCccccccC
Q 019839 263 NFSLNDLDVVANGYSHFRSYIMEEGEHRRFERESFPAFVGKCIDLNE-FPQYVREYD 318 (335)
Q Consensus 263 ~ft~~~~d~v~~~~~~f~~~l~~~~~~~~~~~~~~~~f~v~~i~~~~-~pq~~~~ye 318 (335)
+...+..... |.+ .||+++.+.+.| |||.. |.|
T Consensus 398 ------p~tlard~~~----l~~------------~gy~~~~~~~~DmFP~T~-HvE 431 (431)
T TIGR00479 398 ------PATLARDLEF----LCK------------EGYGITWVQPVDMFPHTA-HVE 431 (431)
T ss_pred ------HHHHHHHHHH----HHH------------CCeeEEEEEEeccCCCCC-CCC
Confidence 2222222222 211 367777775555 99987 543
No 38
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.14 E-value=5.4e-10 Score=103.88 Aligned_cols=119 Identities=8% Similarity=0.045 Sum_probs=88.0
Q ss_pred eeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh-CCEEEEecCchHHHHHHHHHHHHccCCCCCCCee
Q 019839 97 QVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV-AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSV 175 (335)
Q Consensus 97 ~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~-~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v 175 (335)
++-++++--+..++... ...++.+|||+|||+|..+..+++. +.+|+++|+++.+++.++.+... ..++
T Consensus 32 ~~~~gg~~~~~~~l~~l---~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~-------~~~i 101 (263)
T PTZ00098 32 YISSGGIEATTKILSDI---ELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD-------KNKI 101 (263)
T ss_pred CCCCCchHHHHHHHHhC---CCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc-------CCce
Confidence 33344444455555543 4467889999999999988888764 67999999999999999887643 1356
Q ss_pred EEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcc--cHHHHHHHHHHhccCCCcce
Q 019839 176 HVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDD--LTDALFHTLKRLMPLGSKKV 248 (335)
Q Consensus 176 ~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~--~~~~L~~tl~~lL~~~~~~~ 248 (335)
.+...|..+..- ..++||+|++.+++++.. ....+++.+.++|+|||..+
T Consensus 102 ~~~~~D~~~~~~-----------------------~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lv 153 (263)
T PTZ00098 102 EFEANDILKKDF-----------------------PENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILL 153 (263)
T ss_pred EEEECCcccCCC-----------------------CCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEE
Confidence 777766553210 134899999999988754 77889999999999998654
No 39
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.13 E-value=8.8e-10 Score=102.39 Aligned_cols=116 Identities=17% Similarity=0.204 Sum_probs=99.0
Q ss_pred hhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh-CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEE
Q 019839 100 KAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV-AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVR 178 (335)
Q Consensus 100 ~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~-~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~ 178 (335)
++...-.+.+++.. .+-+|++|||+|||-|.+++.+|+. +.+|++++++++.++.+++.+..-+. ..+++++
T Consensus 55 eAQ~~k~~~~~~kl---~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl----~~~v~v~ 127 (283)
T COG2230 55 EAQRAKLDLILEKL---GLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGL----EDNVEVR 127 (283)
T ss_pred HHHHHHHHHHHHhc---CCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCC----CcccEEE
Confidence 34445556677664 6678999999999999999999998 89999999999999999998887664 3589999
Q ss_pred eccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCccc--HHHHHHHHHHhccCCCcce
Q 019839 179 DLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDL--TDALFHTLKRLMPLGSKKV 248 (335)
Q Consensus 179 ~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~--~~~L~~tl~~lL~~~~~~~ 248 (335)
..||.+.+ ++||-|++.+++.+... .+.+++.+.++|+++|..+
T Consensus 128 l~d~rd~~--------------------------e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~l 173 (283)
T COG2230 128 LQDYRDFE--------------------------EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRML 173 (283)
T ss_pred eccccccc--------------------------cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEE
Confidence 99999863 25999999999999755 9999999999999998754
No 40
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.13 E-value=7.7e-10 Score=111.07 Aligned_cols=101 Identities=17% Similarity=0.144 Sum_probs=83.5
Q ss_pred CCCCeEEEEcCccCHHHHHHHHh-CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839 119 FNGIISLELGAGTGLAGILLSRV-AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA 197 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~la~~-~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~ 197 (335)
-++.+|||+|||+|..++.+++. +.+|+++|+++.+++.+++|.... ..++.+...|+.....
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~------~~~v~~~~~d~~~~~~---------- 328 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGR------KCSVEFEVADCTKKTY---------- 328 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcC------CCceEEEEcCcccCCC----------
Confidence 36789999999999999888875 779999999999999999887522 2467788888765411
Q ss_pred cccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839 198 SQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV 248 (335)
Q Consensus 198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~ 248 (335)
..++||+|++.+++++......+++.+.++|+|+|..+
T Consensus 329 -------------~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~ 366 (475)
T PLN02336 329 -------------PDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVL 366 (475)
T ss_pred -------------CCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEE
Confidence 12479999999999999999999999999999988543
No 41
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.12 E-value=1.7e-11 Score=96.43 Aligned_cols=95 Identities=16% Similarity=0.144 Sum_probs=60.7
Q ss_pred EEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcccccc
Q 019839 125 LELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQERY 202 (335)
Q Consensus 125 LELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~ 202 (335)
||+|||+|.....++.. ..+|+++|+++.+++.+++++....... ...+.+...+..+..
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~---------------- 62 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDN--FERLRFDVLDLFDYD---------------- 62 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT-----EEEEE--SSS---CC----------------
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcc--eeEEEeecCChhhcc----------------
Confidence 79999999998888877 6899999999999988887777654210 012222222222210
Q ss_pred ccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCC
Q 019839 203 SWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGS 245 (335)
Q Consensus 203 ~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~ 245 (335)
..++||+|+++.++++.+....+++.+.++|+|||
T Consensus 63 --------~~~~fD~V~~~~vl~~l~~~~~~l~~~~~~L~pgG 97 (99)
T PF08242_consen 63 --------PPESFDLVVASNVLHHLEDIEAVLRNIYRLLKPGG 97 (99)
T ss_dssp --------C----SEEEEE-TTS--S-HHHHHHHHTTT-TSS-
T ss_pred --------cccccceehhhhhHhhhhhHHHHHHHHHHHcCCCC
Confidence 12489999999999999999999999999999988
No 42
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.12 E-value=9.8e-09 Score=90.35 Aligned_cols=96 Identities=15% Similarity=0.045 Sum_probs=74.5
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhC--CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCC
Q 019839 119 FNGIISLELGAGTGLAGILLSRVA--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS 196 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~la~~~--~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~ 196 (335)
.++.+|||+|||+|..++.+++.+ .+|++.|.++.+++.+++|+..++. .++.+...+....
T Consensus 30 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~-----~~i~~~~~d~~~~----------- 93 (187)
T PRK08287 30 HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGC-----GNIDIIPGEAPIE----------- 93 (187)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC-----CCeEEEecCchhh-----------
Confidence 478899999999999999999874 6999999999999999999988763 3466655443211
Q ss_pred ccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcc
Q 019839 197 ASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKK 247 (335)
Q Consensus 197 ~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~ 247 (335)
...+||+|++.... .....+++.+.++|+++|..
T Consensus 94 --------------~~~~~D~v~~~~~~---~~~~~~l~~~~~~Lk~gG~l 127 (187)
T PRK08287 94 --------------LPGKADAIFIGGSG---GNLTAIIDWSLAHLHPGGRL 127 (187)
T ss_pred --------------cCcCCCEEEECCCc---cCHHHHHHHHHHhcCCCeEE
Confidence 12479999986543 34577889999999998853
No 43
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.11 E-value=5.8e-10 Score=102.59 Aligned_cols=96 Identities=11% Similarity=-0.027 Sum_probs=75.3
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcc
Q 019839 119 FNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS 198 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~ 198 (335)
.++.+|||+|||+|..+..++..+.+|+++|+++.+++.++.+... ..+...|+....
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~~----------~~~~~~d~~~~~------------ 98 (251)
T PRK10258 41 RKFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDAA----------DHYLAGDIESLP------------ 98 (251)
T ss_pred cCCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCC----------CCEEEcCcccCc------------
Confidence 3568999999999999988888899999999999999998876421 122333333210
Q ss_pred ccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcc
Q 019839 199 QERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKK 247 (335)
Q Consensus 199 ~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~ 247 (335)
....+||+|+++.++++......++..+.++|+++|..
T Consensus 99 -----------~~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l 136 (251)
T PRK10258 99 -----------LATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVV 136 (251)
T ss_pred -----------CCCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEE
Confidence 01247999999999998888999999999999998843
No 44
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=9.9e-10 Score=102.42 Aligned_cols=110 Identities=18% Similarity=0.336 Sum_probs=81.8
Q ss_pred HHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhC--CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCC
Q 019839 106 ADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVA--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWM 183 (335)
Q Consensus 106 a~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~--~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~ 183 (335)
++.|++++ +....+ +|||||||.|.+|+.+|+.. .+|+++|.+..+++.+++|+..|... +..+..-+-.
T Consensus 147 S~lLl~~l--~~~~~~-~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~-----~~~v~~s~~~ 218 (300)
T COG2813 147 SRLLLETL--PPDLGG-KVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVE-----NTEVWASNLY 218 (300)
T ss_pred HHHHHHhC--CccCCC-cEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCC-----ccEEEEeccc
Confidence 34444443 233445 99999999999999999995 69999999999999999999999842 2233332222
Q ss_pred CCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcc-----cHHHHHHHHHHhccCCCcce
Q 019839 184 NPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDD-----LTDALFHTLKRLMPLGSKKV 248 (335)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~-----~~~~L~~tl~~lL~~~~~~~ 248 (335)
+. ..++||+||+.-.++.-. ....++..-.+.|++||...
T Consensus 219 ~~-------------------------v~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~ 263 (300)
T COG2813 219 EP-------------------------VEGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELW 263 (300)
T ss_pred cc-------------------------ccccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEE
Confidence 22 123899999999998743 23479999999999998753
No 45
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.11 E-value=1.3e-09 Score=100.65 Aligned_cols=97 Identities=18% Similarity=0.104 Sum_probs=75.6
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCC
Q 019839 118 DFNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS 195 (335)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~ 195 (335)
..++.+|||||||+|..+..+++. +.+|+++|+++.+++.++.++. ++.+...|-....
T Consensus 29 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~----------~~~~~~~d~~~~~--------- 89 (258)
T PRK01683 29 LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP----------DCQFVEADIASWQ--------- 89 (258)
T ss_pred CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC----------CCeEEECchhccC---------
Confidence 346789999999999999888876 5799999999999999987631 2333333322110
Q ss_pred CccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839 196 SASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV 248 (335)
Q Consensus 196 ~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~ 248 (335)
...+||+|+++.++++......+++.+.++|++||..+
T Consensus 90 ---------------~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~ 127 (258)
T PRK01683 90 ---------------PPQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLA 127 (258)
T ss_pred ---------------CCCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEE
Confidence 12389999999999988888999999999999988543
No 46
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.10 E-value=1.2e-09 Score=101.93 Aligned_cols=116 Identities=16% Similarity=0.168 Sum_probs=88.9
Q ss_pred hhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh-CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEE
Q 019839 100 KAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV-AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVR 178 (335)
Q Consensus 100 ~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~-~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~ 178 (335)
.|-....+++++.. ..-+|.+|||||||-|-+++.+|+. |.+|++..++++..+.+++.+...+. ..++.+.
T Consensus 45 ~AQ~~k~~~~~~~~---~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl----~~~v~v~ 117 (273)
T PF02353_consen 45 EAQERKLDLLCEKL---GLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGL----EDRVEVR 117 (273)
T ss_dssp HHHHHHHHHHHTTT---T--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTS----SSTEEEE
T ss_pred HHHHHHHHHHHHHh---CCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCC----CCceEEE
Confidence 34555667777764 5678999999999999999999998 99999999999999999999987654 4678888
Q ss_pred eccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCc--ccHHHHHHHHHHhccCCCcce
Q 019839 179 DLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSD--DLTDALFHTLKRLMPLGSKKV 248 (335)
Q Consensus 179 ~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~--~~~~~L~~tl~~lL~~~~~~~ 248 (335)
..||.+. ..+||-|++-+++.+. ...+.+++.+.++|+|+|..+
T Consensus 118 ~~D~~~~--------------------------~~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~ 163 (273)
T PF02353_consen 118 LQDYRDL--------------------------PGKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLV 163 (273)
T ss_dssp ES-GGG-----------------------------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEE
T ss_pred Eeecccc--------------------------CCCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEE
Confidence 8888654 1289999999999987 678999999999999998654
No 47
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.10 E-value=1.1e-09 Score=99.43 Aligned_cols=110 Identities=11% Similarity=0.122 Sum_probs=87.4
Q ss_pred HHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 106 ADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 106 a~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
.+|+.... ...++++|||||||+|..++.+++.+.+|+++|.++.+++.++.|+..+. ..+.+...++.+.
T Consensus 37 ~~~l~~~~---~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~------~~~~~~~~~~~~~ 107 (233)
T PRK05134 37 LNYIREHA---GGLFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESG------LKIDYRQTTAEEL 107 (233)
T ss_pred HHHHHHhc---cCCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcC------CceEEEecCHHHh
Confidence 45666553 34678999999999999999999988999999999999999999987654 2345555554432
Q ss_pred CCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCc
Q 019839 186 WPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSK 246 (335)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~ 246 (335)
.. ...++||+|+++.++++......+++.+.++|+++|.
T Consensus 108 ~~----------------------~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~ 146 (233)
T PRK05134 108 AA----------------------EHPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGL 146 (233)
T ss_pred hh----------------------hcCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcE
Confidence 10 1235899999999999998899999999999999874
No 48
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.10 E-value=1e-09 Score=102.21 Aligned_cols=103 Identities=19% Similarity=0.148 Sum_probs=82.5
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHh-C--CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCC
Q 019839 118 DFNGIISLELGAGTGLAGILLSRV-A--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGN 194 (335)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~la~~-~--~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~ 194 (335)
.-+|.+|||+|||+|..++.+++. + .+|+++|.++.+++.+++|+..+.. .++.+...++.+...
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~-----~~v~~~~~d~~~l~~------- 142 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY-----TNVEFRLGEIEALPV------- 142 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC-----CCEEEEEcchhhCCC-------
Confidence 347899999999999988877765 4 4799999999999999999887652 456666666543210
Q ss_pred CCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839 195 SSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV 248 (335)
Q Consensus 195 ~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~ 248 (335)
..+.||+|++.-++++......+++.+.++|+|||..+
T Consensus 143 ----------------~~~~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~ 180 (272)
T PRK11873 143 ----------------ADNSVDVIISNCVINLSPDKERVFKEAFRVLKPGGRFA 180 (272)
T ss_pred ----------------CCCceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEE
Confidence 12479999999999888888899999999999998654
No 49
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.10 E-value=1.1e-09 Score=99.26 Aligned_cols=101 Identities=16% Similarity=0.049 Sum_probs=81.2
Q ss_pred CCCCeEEEEcCccCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCC
Q 019839 119 FNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS 195 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~ 195 (335)
.+|++|||+|||+|..+..+++. +.+|++.|+++.+++.++.|+..+. ..++.+...|..+...
T Consensus 44 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-----~~~v~~~~~d~~~~~~-------- 110 (231)
T TIGR02752 44 QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAG-----LHNVELVHGNAMELPF-------- 110 (231)
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcC-----CCceEEEEechhcCCC--------
Confidence 46889999999999999988875 3599999999999999999987655 2456666655443210
Q ss_pred CccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcc
Q 019839 196 SASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKK 247 (335)
Q Consensus 196 ~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~ 247 (335)
..++||+|+++.++.+.+....+++.+.++|+++|..
T Consensus 111 ---------------~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l 147 (231)
T TIGR02752 111 ---------------DDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKV 147 (231)
T ss_pred ---------------CCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEE
Confidence 1248999999999988888889999999999998854
No 50
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.10 E-value=1e-09 Score=101.88 Aligned_cols=105 Identities=15% Similarity=0.022 Sum_probs=81.1
Q ss_pred CCCCeEEEEcCccCHHHHHHHHh-C--CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCC
Q 019839 119 FNGIISLELGAGTGLAGILLSRV-A--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS 195 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~la~~-~--~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~ 195 (335)
.++.+|||+|||+|..++.+++. + .+|+++|++++|++.++++........ ..++.+...|..+..-
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~--~~~i~~~~~d~~~lp~-------- 141 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSC--YKNIEWIEGDATDLPF-------- 141 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhcc--CCCeEEEEcccccCCC--------
Confidence 46789999999999999888875 3 589999999999999987754211100 2456666666543210
Q ss_pred CccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839 196 SASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV 248 (335)
Q Consensus 196 ~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~ 248 (335)
..+.||+|+++.++++.+....+++.+.++|+|||..+
T Consensus 142 ---------------~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~ 179 (261)
T PLN02233 142 ---------------DDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVS 179 (261)
T ss_pred ---------------CCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEE
Confidence 23479999999999999999999999999999998654
No 51
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.09 E-value=4e-09 Score=85.52 Aligned_cols=100 Identities=13% Similarity=0.167 Sum_probs=75.5
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCC
Q 019839 118 DFNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS 195 (335)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~ 195 (335)
..++.+|||||||+|..++.+++. +.+|+++|+++.+++.+++|+..++. .++.+...+.....+
T Consensus 17 ~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~~~~-------- 83 (124)
T TIGR02469 17 LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGV-----SNIVIVEGDAPEALE-------- 83 (124)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCC-----CceEEEeccccccCh--------
Confidence 345789999999999999999887 46899999999999999999988752 345555554332110
Q ss_pred CccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcc
Q 019839 196 SASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKK 247 (335)
Q Consensus 196 ~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~ 247 (335)
....+||+|+.... ......+++.+.++|+++|..
T Consensus 84 --------------~~~~~~D~v~~~~~---~~~~~~~l~~~~~~Lk~gG~l 118 (124)
T TIGR02469 84 --------------DSLPEPDRVFIGGS---GGLLQEILEAIWRRLRPGGRI 118 (124)
T ss_pred --------------hhcCCCCEEEECCc---chhHHHHHHHHHHHcCCCCEE
Confidence 01248999998643 234568999999999998854
No 52
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.09 E-value=9e-10 Score=99.41 Aligned_cols=99 Identities=15% Similarity=0.066 Sum_probs=82.3
Q ss_pred CeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCccc
Q 019839 122 IISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQ 199 (335)
Q Consensus 122 ~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~ 199 (335)
++|||+|||+|..++.+++. +.+|+++|+++++++.++.++..++. ..++.+...|.....
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl----~~~i~~~~~d~~~~~------------- 63 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGL----QGRIRIFYRDSAKDP------------- 63 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCC----CcceEEEecccccCC-------------
Confidence 57999999999999888876 36899999999999999999877653 356777777764431
Q ss_pred cccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839 200 ERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV 248 (335)
Q Consensus 200 ~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~ 248 (335)
..++||+|++..++++......+++.+.++|+|+|..+
T Consensus 64 -----------~~~~fD~I~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~ 101 (224)
T smart00828 64 -----------FPDTYDLVFGFEVIHHIKDKMDLFSNISRHLKDGGHLV 101 (224)
T ss_pred -----------CCCCCCEeehHHHHHhCCCHHHHHHHHHHHcCCCCEEE
Confidence 12379999999999999889999999999999998654
No 53
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.08 E-value=1.4e-09 Score=105.64 Aligned_cols=74 Identities=16% Similarity=0.113 Sum_probs=59.0
Q ss_pred HHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEecc
Q 019839 102 ELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLN 181 (335)
Q Consensus 102 a~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ld 181 (335)
+..|.+++.... . ..+.+||||+||+|.+|+.+++.+++|+++|.++.+++.+++|+..|+. .++.+...|
T Consensus 192 ~e~l~~~v~~~~---~-~~~~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~-----~~v~~~~~d 262 (362)
T PRK05031 192 NEKMLEWALDAT---K-GSKGDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGI-----DNVQIIRMS 262 (362)
T ss_pred HHHHHHHHHHHh---h-cCCCeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhCC-----CcEEEEECC
Confidence 556666665542 1 1235799999999999999999889999999999999999999999973 467777776
Q ss_pred CCC
Q 019839 182 WMN 184 (335)
Q Consensus 182 W~~ 184 (335)
..+
T Consensus 263 ~~~ 265 (362)
T PRK05031 263 AEE 265 (362)
T ss_pred HHH
Confidence 543
No 54
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.07 E-value=1.6e-09 Score=104.35 Aligned_cols=97 Identities=18% Similarity=0.181 Sum_probs=75.4
Q ss_pred CCeEEEEcCccCHHHHHHHHhC--CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcc
Q 019839 121 GIISLELGAGTGLAGILLSRVA--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS 198 (335)
Q Consensus 121 g~~VLELG~GtGL~gl~la~~~--~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~ 198 (335)
..+|||||||+|.+++.+++.+ .+|+++|+++.+++.++.|++.|.. ...+...|....
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l------~~~~~~~D~~~~------------- 257 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGL------EGEVFASNVFSD------------- 257 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC------CCEEEEcccccc-------------
Confidence 3479999999999999999874 5899999999999999999999873 123333332211
Q ss_pred ccccccCcchhhccCCccEEEEeccccC-----cccHHHHHHHHHHhccCCCcce
Q 019839 199 QERYSWNSSELKEVQRASVLLAADVIYS-----DDLTDALFHTLKRLMPLGSKKV 248 (335)
Q Consensus 199 ~~~~~w~~~~~~~~~~fDlIlasDviY~-----~~~~~~L~~tl~~lL~~~~~~~ 248 (335)
..++||+|++.-.+++ ....+.+++.+.++|+++|...
T Consensus 258 ------------~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~ 300 (342)
T PRK09489 258 ------------IKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELR 300 (342)
T ss_pred ------------cCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEE
Confidence 1247999999887765 2456889999999999998643
No 55
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.07 E-value=1.5e-09 Score=105.00 Aligned_cols=74 Identities=15% Similarity=0.125 Sum_probs=57.9
Q ss_pred HHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEecc
Q 019839 102 ELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLN 181 (335)
Q Consensus 102 a~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ld 181 (335)
+..|.+++.+.. ...+.+|||||||+|..|+.+++.+++|++.|.++.+++.+++|+..|+. .++.+...|
T Consensus 183 ~~~l~~~v~~~~----~~~~~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n~~~~~~-----~~v~~~~~d 253 (353)
T TIGR02143 183 NIKMLEWACEVT----QGSKGDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANNI-----DNVQIIRMS 253 (353)
T ss_pred HHHHHHHHHHHh----hcCCCcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCC-----CcEEEEEcC
Confidence 345555555432 12344799999999999999999988999999999999999999999973 457777766
Q ss_pred CCC
Q 019839 182 WMN 184 (335)
Q Consensus 182 W~~ 184 (335)
..+
T Consensus 254 ~~~ 256 (353)
T TIGR02143 254 AEE 256 (353)
T ss_pred HHH
Confidence 544
No 56
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.06 E-value=4e-10 Score=90.96 Aligned_cols=102 Identities=16% Similarity=0.053 Sum_probs=80.2
Q ss_pred CCeEEEEcCccCHHHHHHHHhC-CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCccc
Q 019839 121 GIISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQ 199 (335)
Q Consensus 121 g~~VLELG~GtGL~gl~la~~~-~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~ 199 (335)
|.+|||+|||+|.+.+.+++.+ .+|++.|+++.+++.++.|+..+.. ..++.+...|+.+..+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~----~~~~~~~~~D~~~~~~------------ 64 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGL----DDRVEVIVGDARDLPE------------ 64 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTT----TTTEEEEESHHHHHHH------------
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccC----CceEEEEECchhhchh------------
Confidence 5689999999999999999998 9999999999999999999999864 3568888887655310
Q ss_pred cccccCcchhhccCCccEEEEeccccCc--------ccHHHHHHHHHHhccCCCcc
Q 019839 200 ERYSWNSSELKEVQRASVLLAADVIYSD--------DLTDALFHTLKRLMPLGSKK 247 (335)
Q Consensus 200 ~~~~w~~~~~~~~~~fDlIlasDviY~~--------~~~~~L~~tl~~lL~~~~~~ 247 (335)
.....+||+|+++-..... .....+++.+.++|+++|..
T Consensus 65 ---------~~~~~~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~ 111 (117)
T PF13659_consen 65 ---------PLPDGKFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVL 111 (117)
T ss_dssp ---------TCTTT-EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEE
T ss_pred ---------hccCceeEEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEE
Confidence 0124689999997777643 24678899999999998744
No 57
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.05 E-value=1.7e-09 Score=99.92 Aligned_cols=95 Identities=15% Similarity=0.078 Sum_probs=74.9
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCC
Q 019839 118 DFNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS 195 (335)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~ 195 (335)
...+.+|||||||+|..+..+++. +.+|+++|+++.+++.++.+ | +.+...|..+.
T Consensus 27 ~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~---~---------~~~~~~d~~~~---------- 84 (255)
T PRK14103 27 AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER---G---------VDARTGDVRDW---------- 84 (255)
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc---C---------CcEEEcChhhC----------
Confidence 357789999999999999999887 67999999999999888642 1 23333332211
Q ss_pred CccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839 196 SASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV 248 (335)
Q Consensus 196 ~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~ 248 (335)
...++||+|+++.++++......+++.+.++|+|||..+
T Consensus 85 --------------~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~ 123 (255)
T PRK14103 85 --------------KPKPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIA 123 (255)
T ss_pred --------------CCCCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEE
Confidence 012489999999999998889999999999999998543
No 58
>PRK08317 hypothetical protein; Provisional
Probab=99.05 E-value=3.7e-09 Score=95.36 Aligned_cols=103 Identities=15% Similarity=0.038 Sum_probs=81.4
Q ss_pred CCCCCCeEEEEcCccCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCC
Q 019839 117 SDFNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLG 193 (335)
Q Consensus 117 ~~~~g~~VLELG~GtGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~ 193 (335)
...++.+|||+|||+|..+..++.. ..+|+++|.++.+++.++.+.... ..++.+...|......
T Consensus 16 ~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~------~~~~~~~~~d~~~~~~------ 83 (241)
T PRK08317 16 AVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL------GPNVEFVRGDADGLPF------ 83 (241)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC------CCceEEEecccccCCC------
Confidence 4457889999999999999888876 368999999999999998883322 2456666666543210
Q ss_pred CCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839 194 NSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV 248 (335)
Q Consensus 194 ~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~ 248 (335)
..+.||+|++..++.+......+++.+.++|+++|..+
T Consensus 84 -----------------~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~ 121 (241)
T PRK08317 84 -----------------PDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVV 121 (241)
T ss_pred -----------------CCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEE
Confidence 12489999999999998899999999999999998654
No 59
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.05 E-value=2.3e-09 Score=94.69 Aligned_cols=101 Identities=14% Similarity=0.154 Sum_probs=78.6
Q ss_pred CCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCC
Q 019839 117 SDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS 196 (335)
Q Consensus 117 ~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~ 196 (335)
..+++.++||||||.|.-++.+|+.|..|++.|.++..++.+++-++.++ -.+++...|..+..
T Consensus 27 ~~~~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~------l~i~~~~~Dl~~~~---------- 90 (192)
T PF03848_consen 27 PLLKPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEG------LDIRTRVADLNDFD---------- 90 (192)
T ss_dssp TTS-SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-------TEEEEE-BGCCBS----------
T ss_pred hhcCCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcC------ceeEEEEecchhcc----------
Confidence 44678899999999999999999999999999999999999988777665 34777777765531
Q ss_pred ccccccccCcchhhccCCccEEEEeccccC--cccHHHHHHHHHHhccCCCcc
Q 019839 197 ASQERYSWNSSELKEVQRASVLLAADVIYS--DDLTDALFHTLKRLMPLGSKK 247 (335)
Q Consensus 197 ~~~~~~~w~~~~~~~~~~fDlIlasDviY~--~~~~~~L~~tl~~lL~~~~~~ 247 (335)
..+.||+|++.-|+++ .+..+.+++.++..+++||-.
T Consensus 91 --------------~~~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~ 129 (192)
T PF03848_consen 91 --------------FPEEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYN 129 (192)
T ss_dssp ---------------TTTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEE
T ss_pred --------------ccCCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEE
Confidence 1247999998766654 577889999999999998844
No 60
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.05 E-value=6.9e-09 Score=95.51 Aligned_cols=100 Identities=15% Similarity=0.230 Sum_probs=78.5
Q ss_pred CCCCeEEEEcCccCHHHHHHHHh----CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCC
Q 019839 119 FNGIISLELGAGTGLAGILLSRV----AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGN 194 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~la~~----~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~ 194 (335)
..+.+|||||||+|..++.+++. +.+|+++|.++.|++.+++|+..+.. ..++.+...+..+.
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~----~~~v~~~~~d~~~~--------- 121 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKA----PTPVDVIEGDIRDI--------- 121 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC----CCCeEEEeCChhhC---------
Confidence 36789999999999998888763 57999999999999999999987653 24677776665432
Q ss_pred CCccccccccCcchhhccCCccEEEEeccccCcc--cHHHHHHHHHHhccCCCcc
Q 019839 195 SSASQERYSWNSSELKEVQRASVLLAADVIYSDD--LTDALFHTLKRLMPLGSKK 247 (335)
Q Consensus 195 ~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~--~~~~L~~tl~~lL~~~~~~ 247 (335)
....+|+|+++-++++.+ ....+++.+.+.|+|||..
T Consensus 122 ----------------~~~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l 160 (247)
T PRK15451 122 ----------------AIENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGAL 160 (247)
T ss_pred ----------------CCCCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEE
Confidence 113589999988887643 3468999999999998843
No 61
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=2.2e-09 Score=100.61 Aligned_cols=75 Identities=21% Similarity=0.189 Sum_probs=57.1
Q ss_pred HHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCC--EEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEe
Q 019839 102 ELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAW--TVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRD 179 (335)
Q Consensus 102 a~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~--~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ 179 (335)
+..|.+.+.... ...+.+|||||||+|.+++.+|+.+. +|++||+++++++.+++|+..|+. .++.+..
T Consensus 96 Te~Lve~~l~~~----~~~~~~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l-----~~~~~~~ 166 (280)
T COG2890 96 TELLVEAALALL----LQLDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL-----VRVLVVQ 166 (280)
T ss_pred hHHHHHHHHHhh----hhcCCcEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC-----ccEEEEe
Confidence 556666654221 11112899999999999999999864 999999999999999999999984 3344444
Q ss_pred ccCCCC
Q 019839 180 LNWMNP 185 (335)
Q Consensus 180 ldW~~~ 185 (335)
.||.+.
T Consensus 167 ~dlf~~ 172 (280)
T COG2890 167 SDLFEP 172 (280)
T ss_pred eecccc
Confidence 488876
No 62
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.05 E-value=7.4e-10 Score=87.57 Aligned_cols=93 Identities=19% Similarity=0.221 Sum_probs=70.7
Q ss_pred EEEEcCccCHHHHHHHHhC-----CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcc
Q 019839 124 SLELGAGTGLAGILLSRVA-----WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS 198 (335)
Q Consensus 124 VLELG~GtGL~gl~la~~~-----~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~ 198 (335)
|||||||+|.....+++.. .++++.|+++++++.++++..... .++++...|..+.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~------~~~~~~~~D~~~l------------- 61 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDG------PKVRFVQADARDL------------- 61 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTT------TTSEEEESCTTCH-------------
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcC------CceEEEECCHhHC-------------
Confidence 7999999999999988874 799999999999999999987633 3567777776542
Q ss_pred ccccccCcchhhccCCccEEEEecc-ccC--cccHHHHHHHHHHhccCCC
Q 019839 199 QERYSWNSSELKEVQRASVLLAADV-IYS--DDLTDALFHTLKRLMPLGS 245 (335)
Q Consensus 199 ~~~~~w~~~~~~~~~~fDlIlasDv-iY~--~~~~~~L~~tl~~lL~~~~ 245 (335)
....++||+|+++.. +++ ++....+++.+.++++|+|
T Consensus 62 ----------~~~~~~~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 62 ----------PFSDGKFDLVVCSGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp ----------HHHSSSEEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred ----------cccCCCeeEEEEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 113459999999655 444 4568889999999999865
No 63
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.04 E-value=1.2e-09 Score=96.09 Aligned_cols=96 Identities=18% Similarity=0.181 Sum_probs=72.4
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCccc
Q 019839 120 NGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQ 199 (335)
Q Consensus 120 ~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~ 199 (335)
+-.++||+|||.|.++..+|..+.+++++|+++.+++.+++.+.. .++|.+...+..+.++
T Consensus 43 ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~-------~~~V~~~~~dvp~~~P------------ 103 (201)
T PF05401_consen 43 RYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAG-------LPHVEWIQADVPEFWP------------ 103 (201)
T ss_dssp SEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT--------SSEEEEES-TTT---------------
T ss_pred ccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCC-------CCCeEEEECcCCCCCC------------
Confidence 345899999999999999999999999999999999999988753 3578888888766543
Q ss_pred cccccCcchhhccCCccEEEEeccccCccc---HHHHHHHHHHhccCCCc
Q 019839 200 ERYSWNSSELKEVQRASVLLAADVIYSDDL---TDALFHTLKRLMPLGSK 246 (335)
Q Consensus 200 ~~~~w~~~~~~~~~~fDlIlasDviY~~~~---~~~L~~tl~~lL~~~~~ 246 (335)
.++||+|+.|.|+|+-.. ...++..+...|+|+|.
T Consensus 104 ------------~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~ 141 (201)
T PF05401_consen 104 ------------EGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGH 141 (201)
T ss_dssp ------------SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEE
T ss_pred ------------CCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCE
Confidence 358999999999999754 45677788888999884
No 64
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.04 E-value=8.9e-09 Score=92.21 Aligned_cols=93 Identities=16% Similarity=0.253 Sum_probs=65.3
Q ss_pred CCCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCC
Q 019839 119 FNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS 196 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~ 196 (335)
.++.+|||+|||+|..+..+++. +.+|+++|+++.+++.++.|.. .+.+...+..+..
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~----------~~~~~~~d~~~~~---------- 101 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP----------NINIIQGSLFDPF---------- 101 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC----------CCcEEEeeccCCC----------
Confidence 46779999999999999988876 5799999999999999987632 1233344433211
Q ss_pred ccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCc
Q 019839 197 ASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSK 246 (335)
Q Consensus 197 ~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~ 246 (335)
..++||+|++..++++.. .+.+.+.++++.+..++
T Consensus 102 --------------~~~sfD~V~~~~vL~hl~-p~~~~~~l~el~r~~~~ 136 (204)
T TIGR03587 102 --------------KDNFFDLVLTKGVLIHIN-PDNLPTAYRELYRCSNR 136 (204)
T ss_pred --------------CCCCEEEEEECChhhhCC-HHHHHHHHHHHHhhcCc
Confidence 234899999999998764 33444455555444333
No 65
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.03 E-value=3.7e-09 Score=95.28 Aligned_cols=95 Identities=19% Similarity=0.206 Sum_probs=75.3
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839 118 DFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA 197 (335)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~ 197 (335)
..++++|||+|||+|..+..+++.+.+|+++|+++.+++.+++++..+.. ..++.+...|+.+.
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~----~~~i~~~~~d~~~~------------ 116 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDV----AGNVEFEVNDLLSL------------ 116 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC----CCceEEEECChhhC------------
Confidence 46789999999999999999999889999999999999999999877652 23566666665543
Q ss_pred cccccccCcchhhccCCccEEEEeccccCcc--cHHHHHHHHHHhcc
Q 019839 198 SQERYSWNSSELKEVQRASVLLAADVIYSDD--LTDALFHTLKRLMP 242 (335)
Q Consensus 198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~~~--~~~~L~~tl~~lL~ 242 (335)
..+||+|++++++++.+ ....+++.+.++++
T Consensus 117 --------------~~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~ 149 (219)
T TIGR02021 117 --------------CGEFDIVVCMDVLIHYPASDMAKALGHLASLTK 149 (219)
T ss_pred --------------CCCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhC
Confidence 14799999999987643 45566777777665
No 66
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.03 E-value=4e-09 Score=101.21 Aligned_cols=98 Identities=15% Similarity=0.144 Sum_probs=77.4
Q ss_pred CCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839 120 NGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA 197 (335)
Q Consensus 120 ~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~ 197 (335)
.+.+|||||||+|..++.+++. +.+|+++|.++.+++.+++|...+ ++.+...|..+..
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~--------~i~~i~gD~e~lp----------- 173 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK--------ECKIIEGDAEDLP----------- 173 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhcc--------CCeEEeccHHhCC-----------
Confidence 5779999999999999888775 469999999999999998876422 3444554443321
Q ss_pred cccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839 198 SQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV 248 (335)
Q Consensus 198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~ 248 (335)
-..+.||+|++++++++....+.+++.+.++|+++|..+
T Consensus 174 ------------~~~~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~Lv 212 (340)
T PLN02490 174 ------------FPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKAC 212 (340)
T ss_pred ------------CCCCceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEE
Confidence 013479999999999988888899999999999998654
No 67
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.02 E-value=5.9e-09 Score=94.31 Aligned_cols=102 Identities=17% Similarity=0.053 Sum_probs=83.7
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhC---CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCC
Q 019839 119 FNGIISLELGAGTGLAGILLSRVA---WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS 195 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~la~~~---~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~ 195 (335)
.++.+|||+|||+|..++.++..+ .+|+++|.++.+++.+++|+..+.. ..++.+...|+.+...
T Consensus 50 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~----~~~~~~~~~d~~~~~~-------- 117 (239)
T PRK00216 50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGL----SGNVEFVQGDAEALPF-------- 117 (239)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccccc----ccCeEEEecccccCCC--------
Confidence 367899999999999999988875 7999999999999999999866432 2456777777655311
Q ss_pred CccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcc
Q 019839 196 SASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKK 247 (335)
Q Consensus 196 ~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~ 247 (335)
..+.||+|+++.++++......+++.+.++|+++|..
T Consensus 118 ---------------~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~l 154 (239)
T PRK00216 118 ---------------PDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRL 154 (239)
T ss_pred ---------------CCCCccEEEEecccccCCCHHHHHHHHHHhccCCcEE
Confidence 1347999999999999999999999999999998854
No 68
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.02 E-value=6e-09 Score=93.86 Aligned_cols=108 Identities=13% Similarity=0.140 Sum_probs=78.9
Q ss_pred HHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCC---EEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEec
Q 019839 104 VLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAW---TVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDL 180 (335)
Q Consensus 104 ~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~---~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~l 180 (335)
.+..++.+.. ...++.+|||+|||+|..++.+++... +|++.|+++.+++.+++|+..++ ..++.+...
T Consensus 64 ~~~~~~~~~l---~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g-----~~~v~~~~~ 135 (215)
T TIGR00080 64 HMVAMMTELL---ELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLG-----LDNVIVIVG 135 (215)
T ss_pred HHHHHHHHHh---CCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCC-----CCCeEEEEC
Confidence 3444444443 446789999999999999999998843 59999999999999999998876 346777777
Q ss_pred cCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839 181 NWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV 248 (335)
Q Consensus 181 dW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~ 248 (335)
|..+..+ ...+||+|+...... .+.+.+.+.|+++|..+
T Consensus 136 d~~~~~~-----------------------~~~~fD~Ii~~~~~~------~~~~~~~~~L~~gG~lv 174 (215)
T TIGR00080 136 DGTQGWE-----------------------PLAPYDRIYVTAAGP------KIPEALIDQLKEGGILV 174 (215)
T ss_pred CcccCCc-----------------------ccCCCCEEEEcCCcc------cccHHHHHhcCcCcEEE
Confidence 7654321 124899999765432 23456788899988543
No 69
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.01 E-value=6.3e-09 Score=95.11 Aligned_cols=100 Identities=12% Similarity=0.076 Sum_probs=79.0
Q ss_pred CCCCeEEEEcCccCHHHHHHHHh----CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCC
Q 019839 119 FNGIISLELGAGTGLAGILLSRV----AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGN 194 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~la~~----~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~ 194 (335)
..+.+|||||||+|..++.+++. +.+|++.|+++.|++.+++++..... ..++.+...|+.+..
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~----~~~v~~~~~d~~~~~-------- 119 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHS----EIPVEILCNDIRHVE-------- 119 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC----CCCeEEEECChhhCC--------
Confidence 36789999999999999888874 56899999999999999999875432 245777777765531
Q ss_pred CCccccccccCcchhhccCCccEEEEeccccCcc--cHHHHHHHHHHhccCCCcc
Q 019839 195 SSASQERYSWNSSELKEVQRASVLLAADVIYSDD--LTDALFHTLKRLMPLGSKK 247 (335)
Q Consensus 195 ~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~--~~~~L~~tl~~lL~~~~~~ 247 (335)
...+|+|+++.++++.. ....+++.+.+.|+++|..
T Consensus 120 -----------------~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l 157 (239)
T TIGR00740 120 -----------------IKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVL 157 (239)
T ss_pred -----------------CCCCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEE
Confidence 23589999999887753 4577999999999998843
No 70
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.99 E-value=4.9e-09 Score=93.49 Aligned_cols=110 Identities=17% Similarity=0.193 Sum_probs=80.2
Q ss_pred CCCCeEEEEcCccCHHHHHH-HHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839 119 FNGIISLELGAGTGLAGILL-SRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA 197 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~l-a~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~ 197 (335)
..+.+|||||||+|..|+.+ ++.+++|++.|.++.+++.+++|++.|+. .++.+...|+.+..+
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~-----~~v~~~~~D~~~~l~---------- 116 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKA-----GNARVVNTNALSFLA---------- 116 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCC-----CcEEEEEchHHHHHh----------
Confidence 46789999999999999964 55567999999999999999999999873 357777776544211
Q ss_pred cccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHh--ccCCCcceeeceEEEEEEeeecc
Q 019839 198 SQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRL--MPLGSKKVLVNMVLYLALEKRYN 263 (335)
Q Consensus 198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~l--L~~~~~~~~~~p~i~ia~~~R~~ 263 (335)
.....||+|+..-. |.....+.+++.|... +.+ ..+ +|+.+.++..
T Consensus 117 ------------~~~~~fDlV~~DPP-y~~g~~~~~l~~l~~~~~l~~--~~i-----v~ve~~~~~~ 164 (199)
T PRK10909 117 ------------QPGTPHNVVFVDPP-FRKGLLEETINLLEDNGWLAD--EAL-----IYVESEVENG 164 (199)
T ss_pred ------------hcCCCceEEEECCC-CCCChHHHHHHHHHHCCCcCC--CcE-----EEEEecCCCC
Confidence 01236999986444 6667777777777663 444 336 8888766544
No 71
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.97 E-value=1.1e-08 Score=91.50 Aligned_cols=107 Identities=14% Similarity=0.138 Sum_probs=78.4
Q ss_pred HHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEecc
Q 019839 105 LADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLN 181 (335)
Q Consensus 105 La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ld 181 (335)
+..++.+.. ...++.+|||+|||+|..+..+++. +.+|++.|+++.+++.+++|+..++. ..++++...|
T Consensus 60 ~~~~~~~~l---~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~----~~~v~~~~~d 132 (205)
T PRK13944 60 MVAMMCELI---EPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGY----WGVVEVYHGD 132 (205)
T ss_pred HHHHHHHhc---CCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC----CCcEEEEECC
Confidence 344454443 3356789999999999999888876 36999999999999999999988763 2357777777
Q ss_pred CCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcc
Q 019839 182 WMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKK 247 (335)
Q Consensus 182 W~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~ 247 (335)
..+..+ ...+||+|++...+.+ +.+.+.+.|++||..
T Consensus 133 ~~~~~~-----------------------~~~~fD~Ii~~~~~~~------~~~~l~~~L~~gG~l 169 (205)
T PRK13944 133 GKRGLE-----------------------KHAPFDAIIVTAAAST------IPSALVRQLKDGGVL 169 (205)
T ss_pred cccCCc-----------------------cCCCccEEEEccCcch------hhHHHHHhcCcCcEE
Confidence 554321 1248999998766543 335677889998854
No 72
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.97 E-value=3.7e-09 Score=92.00 Aligned_cols=63 Identities=25% Similarity=0.266 Sum_probs=55.0
Q ss_pred CCCCCCeEEEEcCccCHHHHHHHHhC-CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 117 SDFNGIISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 117 ~~~~g~~VLELG~GtGL~gl~la~~~-~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
..+.|++|+|||||||.+|+.++.+| ++|++.|+++++++.++.|+..+ .+++.+...|-.+.
T Consensus 42 g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l------~g~v~f~~~dv~~~ 105 (198)
T COG2263 42 GDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEEL------LGDVEFVVADVSDF 105 (198)
T ss_pred CCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhh------CCceEEEEcchhhc
Confidence 67899999999999999999999997 68999999999999999999884 36677777665543
No 73
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.96 E-value=7e-09 Score=93.67 Aligned_cols=97 Identities=15% Similarity=0.076 Sum_probs=76.3
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhC--CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCC
Q 019839 119 FNGIISLELGAGTGLAGILLSRVA--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS 196 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~la~~~--~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~ 196 (335)
.++++|||||||+|..+..+++.+ .+|+++|.++.+++.++.+.. .++.+...|..+...
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~---------~~~~~~~~d~~~~~~--------- 94 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS---------ENVQFICGDAEKLPL--------- 94 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC---------CCCeEEecchhhCCC---------
Confidence 556899999999999999998875 468999999999888876543 134455555443210
Q ss_pred ccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcc
Q 019839 197 ASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKK 247 (335)
Q Consensus 197 ~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~ 247 (335)
..++||+|+++.++++......++..+.++|+++|..
T Consensus 95 --------------~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l 131 (240)
T TIGR02072 95 --------------EDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLL 131 (240)
T ss_pred --------------CCCceeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEE
Confidence 1247999999999999988999999999999998843
No 74
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.96 E-value=7e-09 Score=93.45 Aligned_cols=118 Identities=15% Similarity=0.157 Sum_probs=88.8
Q ss_pred HHHHHHHHHhhcCC-CCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEec
Q 019839 102 ELVLADFVMHKMCT-SSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDL 180 (335)
Q Consensus 102 a~~La~~l~~~~~~-~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~l 180 (335)
......|+.+.... ....++.+|||+|||+|..+..+++.+.+|+++|.++.+++.++.|+..+.. .++.+...
T Consensus 26 ~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~-----~~~~~~~~ 100 (224)
T TIGR01983 26 NPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPL-----LKIEYRCT 100 (224)
T ss_pred hHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCC-----CceEEEeC
Confidence 33445666654311 1235688999999999999999988888999999999999999999887652 23555555
Q ss_pred cCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCc
Q 019839 181 NWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSK 246 (335)
Q Consensus 181 dW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~ 246 (335)
++.+... ....+||+|+++.++++......+++.+.++|+++|.
T Consensus 101 d~~~~~~----------------------~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~ 144 (224)
T TIGR01983 101 SVEDLAE----------------------KGAKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGI 144 (224)
T ss_pred CHHHhhc----------------------CCCCCccEEEehhHHHhCCCHHHHHHHHHHhcCCCcE
Confidence 4433211 0124899999999999999999999999999999874
No 75
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.96 E-value=1.1e-08 Score=91.02 Aligned_cols=103 Identities=12% Similarity=0.113 Sum_probs=77.2
Q ss_pred CCCCCCeEEEEcCccCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCC
Q 019839 117 SDFNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLG 193 (335)
Q Consensus 117 ~~~~g~~VLELG~GtGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~ 193 (335)
...++.+|||+|||+|..++.+++. +.+|++.|.++.+++.+++|+..|+. ..++.+...|..+..+
T Consensus 37 ~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~----~~~v~~~~~d~~~~l~------ 106 (198)
T PRK00377 37 RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGV----LNNIVLIKGEAPEILF------ 106 (198)
T ss_pred CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCC----CCCeEEEEechhhhHh------
Confidence 4568899999999999999999875 36899999999999999999998863 2356666555433210
Q ss_pred CCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839 194 NSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV 248 (335)
Q Consensus 194 ~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~ 248 (335)
...+.||.|+..- .......+++.+.++|+++|..+
T Consensus 107 ----------------~~~~~~D~V~~~~---~~~~~~~~l~~~~~~LkpgG~lv 142 (198)
T PRK00377 107 ----------------TINEKFDRIFIGG---GSEKLKEIISASWEIIKKGGRIV 142 (198)
T ss_pred ----------------hcCCCCCEEEECC---CcccHHHHHHHHHHHcCCCcEEE
Confidence 0124799999732 23456778999999999988543
No 76
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.96 E-value=1.2e-08 Score=95.87 Aligned_cols=99 Identities=13% Similarity=0.091 Sum_probs=76.0
Q ss_pred CCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839 120 NGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA 197 (335)
Q Consensus 120 ~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~ 197 (335)
.+.+|||+|||+|..++.+++. +.+|+++|+++.+++.+++|+..|+. ..++.+...|+.+..+
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~----~~~i~~~~~D~~~~~~---------- 186 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGL----EDRVTLIQSDLFAALP---------- 186 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEECchhhccC----------
Confidence 3578999999999999999987 46999999999999999999998874 2468888888754311
Q ss_pred cccccccCcchhhccCCccEEEEecc--------------ccCc-----------ccHHHHHHHHHHhccCCCc
Q 019839 198 SQERYSWNSSELKEVQRASVLLAADV--------------IYSD-----------DLTDALFHTLKRLMPLGSK 246 (335)
Q Consensus 198 ~~~~~~w~~~~~~~~~~fDlIlasDv--------------iY~~-----------~~~~~L~~tl~~lL~~~~~ 246 (335)
..+||+|++.-. .|.+ .....+++.+.++|+++|.
T Consensus 187 --------------~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~ 246 (284)
T TIGR03533 187 --------------GRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGV 246 (284)
T ss_pred --------------CCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCE
Confidence 136999998522 1221 1246778888999999884
No 77
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.95 E-value=9.1e-09 Score=92.99 Aligned_cols=94 Identities=18% Similarity=0.257 Sum_probs=71.9
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839 118 DFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA 197 (335)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~ 197 (335)
..++.+|||+|||+|..+..+++.+.+|+++|.++.+++.++++...+.. ..++.+...|+...
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~----~~~i~~~~~d~~~~------------ 124 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGL----AGNITFEVGDLESL------------ 124 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCC----ccCcEEEEcCchhc------------
Confidence 35678999999999999999999888999999999999999999876542 13566666663221
Q ss_pred cccccccCcchhhccCCccEEEEeccccCc--ccHHHHHHHHHHhc
Q 019839 198 SQERYSWNSSELKEVQRASVLLAADVIYSD--DLTDALFHTLKRLM 241 (335)
Q Consensus 198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~~--~~~~~L~~tl~~lL 241 (335)
.+.||+|++.+++++. +....+++.+.+++
T Consensus 125 --------------~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~ 156 (230)
T PRK07580 125 --------------LGRFDTVVCLDVLIHYPQEDAARMLAHLASLT 156 (230)
T ss_pred --------------cCCcCEEEEcchhhcCCHHHHHHHHHHHHhhc
Confidence 2479999999999663 34455666666654
No 78
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.95 E-value=1.5e-08 Score=91.19 Aligned_cols=110 Identities=13% Similarity=0.115 Sum_probs=79.2
Q ss_pred HHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhC---CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEE
Q 019839 102 ELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVA---WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVR 178 (335)
Q Consensus 102 a~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~---~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~ 178 (335)
+-.+..++.+.. ...+|.+|||+|||+|..+..+++.. .+|++.|+++++++.+++|++.++ ..++.+.
T Consensus 61 ~p~~~~~~~~~l---~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g-----~~~v~~~ 132 (212)
T PRK13942 61 AIHMVAIMCELL---DLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLG-----YDNVEVI 132 (212)
T ss_pred cHHHHHHHHHHc---CCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC-----CCCeEEE
Confidence 334444555443 44678999999999999998888773 599999999999999999998776 3467777
Q ss_pred eccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839 179 DLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV 248 (335)
Q Consensus 179 ~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~ 248 (335)
..|-...++ ...+||+|++.-.+. .+...+.+.|++||..+
T Consensus 133 ~gd~~~~~~-----------------------~~~~fD~I~~~~~~~------~~~~~l~~~LkpgG~lv 173 (212)
T PRK13942 133 VGDGTLGYE-----------------------ENAPYDRIYVTAAGP------DIPKPLIEQLKDGGIMV 173 (212)
T ss_pred ECCcccCCC-----------------------cCCCcCEEEECCCcc------cchHHHHHhhCCCcEEE
Confidence 766443321 124899998865442 23346677899998644
No 79
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.95 E-value=8.6e-09 Score=101.92 Aligned_cols=153 Identities=17% Similarity=0.188 Sum_probs=105.6
Q ss_pred HHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEecc
Q 019839 102 ELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLN 181 (335)
Q Consensus 102 a~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ld 181 (335)
+..|.++..+.. ....+.+||||=||.|..||.+|+..++|+++++++++++.+++|++.|+. .++.+...+
T Consensus 278 ~ekl~~~a~~~~---~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i-----~N~~f~~~~ 349 (432)
T COG2265 278 AEKLYETALEWL---ELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGI-----DNVEFIAGD 349 (432)
T ss_pred HHHHHHHHHHHH---hhcCCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCC-----CcEEEEeCC
Confidence 556666666653 345678999999999999999999999999999999999999999999994 557777766
Q ss_pred CCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcceeeceEEEEEEeee
Q 019839 182 WMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLVNMVLYLALEKR 261 (335)
Q Consensus 182 W~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~~~~p~i~ia~~~R 261 (335)
-.+..+. | .....+|+||. |++-...--..++.+.+-++..+ +|++|.
T Consensus 350 ae~~~~~---------------~-----~~~~~~d~Vvv-----DPPR~G~~~~~lk~l~~~~p~~I-----vYVSCN-- 397 (432)
T COG2265 350 AEEFTPA---------------W-----WEGYKPDVVVV-----DPPRAGADREVLKQLAKLKPKRI-----VYVSCN-- 397 (432)
T ss_pred HHHHhhh---------------c-----cccCCCCEEEE-----CCCCCCCCHHHHHHHHhcCCCcE-----EEEeCC--
Confidence 4433111 1 02347899988 77654433345555555556778 999982
Q ss_pred ccccccchhhhhhhhhHHHHHHhhhhcccccccccCCCeeeEEecCCC-CCccccccC
Q 019839 262 YNFSLNDLDVVANGYSHFRSYIMEEGEHRRFERESFPAFVGKCIDLNE-FPQYVREYD 318 (335)
Q Consensus 262 ~~ft~~~~d~v~~~~~~f~~~l~~~~~~~~~~~~~~~~f~v~~i~~~~-~pq~~~~ye 318 (335)
..+.+.. ...|.. .++.++++.+.| ||+.- |+|
T Consensus 398 -------P~TlaRD----l~~L~~------------~gy~i~~v~~~DmFP~T~-HvE 431 (432)
T COG2265 398 -------PATLARD----LAILAS------------TGYEIERVQPFDMFPHTH-HVE 431 (432)
T ss_pred -------HHHHHHH----HHHHHh------------CCeEEEEEEEeccCCCcc-ccC
Confidence 2222222 222221 467777775555 99976 554
No 80
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=98.94 E-value=7.2e-09 Score=94.49 Aligned_cols=117 Identities=15% Similarity=0.079 Sum_probs=91.1
Q ss_pred cceeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhC--CEEEEecCchHHHHHHHHHHHHccCCCCCC
Q 019839 95 GLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVA--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQ 172 (335)
Q Consensus 95 G~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~--~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~ 172 (335)
-.+.|+.++...-. ..+|.+|||+|||||-.++.+++.. .+|++.|+++.||+.++..+..-+.
T Consensus 35 ~~~~Wr~~~i~~~~---------~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~----- 100 (238)
T COG2226 35 LHRLWRRALISLLG---------IKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGV----- 100 (238)
T ss_pred chHHHHHHHHHhhC---------CCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCc-----
Confidence 46889976543321 2289999999999999999999985 7999999999999999988764221
Q ss_pred CeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839 173 GSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV 248 (335)
Q Consensus 173 ~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~ 248 (335)
..+.....|-.+-+ -.+..||+|.++-.+.+..+.+..++.+.|.|+|+|+.+
T Consensus 101 ~~i~fv~~dAe~LP-----------------------f~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~ 153 (238)
T COG2226 101 QNVEFVVGDAENLP-----------------------FPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLL 153 (238)
T ss_pred cceEEEEechhhCC-----------------------CCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEE
Confidence 22555555543321 124589999999999999999999999999999998543
No 81
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.94 E-value=2.9e-08 Score=89.13 Aligned_cols=114 Identities=17% Similarity=0.188 Sum_probs=81.1
Q ss_pred eeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeE
Q 019839 97 QVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVH 176 (335)
Q Consensus 97 ~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~ 176 (335)
+.|..... ..++.+.. ...++.+|||+|||+|..+..+++.+.+|++.|+++.+++.+++|+..++ ..++.
T Consensus 59 ~~~~~p~~-~~~l~~~l---~~~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~-----~~~v~ 129 (212)
T PRK00312 59 QTISQPYM-VARMTELL---ELKPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLG-----LHNVS 129 (212)
T ss_pred CeeCcHHH-HHHHHHhc---CCCCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCC-----CCceE
Confidence 33444443 34444432 34578899999999999999888887799999999999999999998875 24577
Q ss_pred EEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839 177 VRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV 248 (335)
Q Consensus 177 v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~ 248 (335)
+...|..+..+ ..++||+|+..-.+. .+.+.+.++|+++|..+
T Consensus 130 ~~~~d~~~~~~-----------------------~~~~fD~I~~~~~~~------~~~~~l~~~L~~gG~lv 172 (212)
T PRK00312 130 VRHGDGWKGWP-----------------------AYAPFDRILVTAAAP------EIPRALLEQLKEGGILV 172 (212)
T ss_pred EEECCcccCCC-----------------------cCCCcCEEEEccCch------hhhHHHHHhcCCCcEEE
Confidence 77776543321 124799999865432 33466788999988543
No 82
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.92 E-value=2e-08 Score=98.32 Aligned_cols=114 Identities=14% Similarity=0.144 Sum_probs=83.3
Q ss_pred hHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEE
Q 019839 101 AELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVR 178 (335)
Q Consensus 101 aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~ 178 (335)
.+..|.+.+.... .++.+|||||||+|..++.+++. +.+|+++|+++.+++.+++|++.|+ .++.+.
T Consensus 237 eTE~LVe~aL~~l-----~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g------~rV~fi 305 (423)
T PRK14966 237 ETEHLVEAVLARL-----PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLG------ARVEFA 305 (423)
T ss_pred cHHHHHHHhhhcc-----CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC------CcEEEE
Confidence 3557777776543 24579999999999999998875 5799999999999999999998875 367888
Q ss_pred eccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCc-------------------------ccHHHH
Q 019839 179 DLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSD-------------------------DLTDAL 233 (335)
Q Consensus 179 ~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~-------------------------~~~~~L 233 (335)
..||.+...+ ..++||+|++.-..... +....+
T Consensus 306 ~gDl~e~~l~----------------------~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~I 363 (423)
T PRK14966 306 HGSWFDTDMP----------------------SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTL 363 (423)
T ss_pred Ecchhccccc----------------------cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHH
Confidence 8888653110 12369999985532111 124467
Q ss_pred HHHHHHhccCCCcc
Q 019839 234 FHTLKRLMPLGSKK 247 (335)
Q Consensus 234 ~~tl~~lL~~~~~~ 247 (335)
++.+.++|+++|..
T Consensus 364 i~~a~~~LkpgG~l 377 (423)
T PRK14966 364 AQGAPDRLAEGGFL 377 (423)
T ss_pred HHHHHHhcCCCcEE
Confidence 77778899998743
No 83
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.92 E-value=1.4e-08 Score=99.29 Aligned_cols=98 Identities=10% Similarity=0.057 Sum_probs=78.1
Q ss_pred CCCCCCeEEEEcCccCHHHHHHHHh-CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCC
Q 019839 117 SDFNGIISLELGAGTGLAGILLSRV-AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS 195 (335)
Q Consensus 117 ~~~~g~~VLELG~GtGL~gl~la~~-~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~ 195 (335)
...+|.+|||+|||+|..++.+++. +.+|+++|+++++++.+++++. . ..+.+...|+.+.
T Consensus 164 ~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~--~------l~v~~~~~D~~~l---------- 225 (383)
T PRK11705 164 QLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA--G------LPVEIRLQDYRDL---------- 225 (383)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--c------CeEEEEECchhhc----------
Confidence 3457889999999999999988875 7899999999999999998873 1 2355555554331
Q ss_pred CccccccccCcchhhccCCccEEEEeccccCc--ccHHHHHHHHHHhccCCCcce
Q 019839 196 SASQERYSWNSSELKEVQRASVLLAADVIYSD--DLTDALFHTLKRLMPLGSKKV 248 (335)
Q Consensus 196 ~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~--~~~~~L~~tl~~lL~~~~~~~ 248 (335)
.++||+|++..++++. ...+.+++.+.++|+|+|..+
T Consensus 226 ----------------~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lv 264 (383)
T PRK11705 226 ----------------NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFL 264 (383)
T ss_pred ----------------CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEE
Confidence 2479999999999885 346789999999999988654
No 84
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.91 E-value=2.5e-08 Score=94.76 Aligned_cols=97 Identities=14% Similarity=0.134 Sum_probs=75.3
Q ss_pred CeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCccc
Q 019839 122 IISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQ 199 (335)
Q Consensus 122 ~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~ 199 (335)
.+|||+|||+|..++.+++. +.+|+++|+++.+++.+++|++.|+. ..++.+...|+.+..+
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l----~~~i~~~~~D~~~~l~------------ 198 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGL----EDRVTLIESDLFAALP------------ 198 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC----CCcEEEEECchhhhCC------------
Confidence 68999999999999999987 46999999999999999999998863 2468888888754321
Q ss_pred cccccCcchhhccCCccEEEEec--------------cccCc-----------ccHHHHHHHHHHhccCCCc
Q 019839 200 ERYSWNSSELKEVQRASVLLAAD--------------VIYSD-----------DLTDALFHTLKRLMPLGSK 246 (335)
Q Consensus 200 ~~~~w~~~~~~~~~~fDlIlasD--------------viY~~-----------~~~~~L~~tl~~lL~~~~~ 246 (335)
..+||+|++.- +.|.+ +....+++.+.++|++||.
T Consensus 199 ------------~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~ 258 (307)
T PRK11805 199 ------------GRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGV 258 (307)
T ss_pred ------------CCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCE
Confidence 13699999852 22222 2246788899999999884
No 85
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.91 E-value=2.3e-08 Score=94.01 Aligned_cols=97 Identities=16% Similarity=0.242 Sum_probs=75.3
Q ss_pred CeEEEEcCccCHHHHHHHHhC--CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCccc
Q 019839 122 IISLELGAGTGLAGILLSRVA--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQ 199 (335)
Q Consensus 122 ~~VLELG~GtGL~gl~la~~~--~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~ 199 (335)
.+|||+|||+|..++.+++.. .+|+++|+++.+++.+++|+..|+. ..++.+...||.+..+
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~----~~~v~~~~~d~~~~~~------------ 179 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQL----EHRVEFIQSNLFEPLA------------ 179 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEECchhccCc------------
Confidence 689999999999999999874 6999999999999999999998873 2458888888876421
Q ss_pred cccccCcchhhccCCccEEEEec-------------cc-cCc-----------ccHHHHHHHHHHhccCCCc
Q 019839 200 ERYSWNSSELKEVQRASVLLAAD-------------VI-YSD-----------DLTDALFHTLKRLMPLGSK 246 (335)
Q Consensus 200 ~~~~w~~~~~~~~~~fDlIlasD-------------vi-Y~~-----------~~~~~L~~tl~~lL~~~~~ 246 (335)
..+||+|++.. ++ |.+ .....+++...++|+++|.
T Consensus 180 ------------~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~ 239 (284)
T TIGR00536 180 ------------GQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGF 239 (284)
T ss_pred ------------CCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCE
Confidence 12689998841 22 222 1456788888899999873
No 86
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.90 E-value=8e-09 Score=92.31 Aligned_cols=101 Identities=9% Similarity=-0.020 Sum_probs=75.2
Q ss_pred CCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccC-CCCCCCCccCCCCC
Q 019839 120 NGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNW-MNPWPPIFSLGNSS 196 (335)
Q Consensus 120 ~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW-~~~~~~~~~~~~~~ 196 (335)
.+.+|||||||+|..++.+++. +.+|+++|+++.+++.+++|+..+. ..++.+...|+ ... +.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~-----~~~v~~~~~d~~~~l-~~-------- 105 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEG-----LTNLRLLCGDAVEVL-LD-------- 105 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcC-----CCCEEEEecCHHHHH-HH--------
Confidence 5679999999999999988876 4689999999999999999998876 34577777776 321 00
Q ss_pred ccccccccCcchhhccCCccEEEEeccccCc--------ccHHHHHHHHHHhccCCCc
Q 019839 197 ASQERYSWNSSELKEVQRASVLLAADVIYSD--------DLTDALFHTLKRLMPLGSK 246 (335)
Q Consensus 197 ~~~~~~~w~~~~~~~~~~fDlIlasDviY~~--------~~~~~L~~tl~~lL~~~~~ 246 (335)
....+.||+|++.-..... .....+++.+.++|+++|.
T Consensus 106 ------------~~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~ 151 (202)
T PRK00121 106 ------------MFPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGE 151 (202)
T ss_pred ------------HcCccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCE
Confidence 0123479999985332111 1257789999999999873
No 87
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.90 E-value=3e-08 Score=90.70 Aligned_cols=116 Identities=16% Similarity=0.226 Sum_probs=85.9
Q ss_pred eehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCee
Q 019839 98 VWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSV 175 (335)
Q Consensus 98 vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v 175 (335)
-++.+..+.+.+.+.. .-.+++|||+|||+|..++.+++. ..+|+++|+++.+++.++.|+..++. .++
T Consensus 69 p~~~~~~l~~~~l~~~----~~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~-----~~~ 139 (251)
T TIGR03534 69 PRPDTEELVEAALERL----KKGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGL-----DNV 139 (251)
T ss_pred CCCChHHHHHHHHHhc----ccCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CeE
Confidence 3456667777776653 124569999999999999999987 56999999999999999999988763 467
Q ss_pred EEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCc--------------------------cc
Q 019839 176 HVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSD--------------------------DL 229 (335)
Q Consensus 176 ~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~--------------------------~~ 229 (335)
.+...|+.+.. ..++||+|++.-..+.. ..
T Consensus 140 ~~~~~d~~~~~------------------------~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 195 (251)
T TIGR03534 140 TFLQSDWFEPL------------------------PGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDF 195 (251)
T ss_pred EEEECchhccC------------------------cCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHH
Confidence 88887776532 12479999985433211 11
Q ss_pred HHHHHHHHHHhccCCCc
Q 019839 230 TDALFHTLKRLMPLGSK 246 (335)
Q Consensus 230 ~~~L~~tl~~lL~~~~~ 246 (335)
...+++.+.++|+++|.
T Consensus 196 ~~~~i~~~~~~L~~gG~ 212 (251)
T TIGR03534 196 YRRIIAQAPRLLKPGGW 212 (251)
T ss_pred HHHHHHHHHHhcccCCE
Confidence 24678889999999874
No 88
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.90 E-value=2.8e-08 Score=97.55 Aligned_cols=105 Identities=13% Similarity=0.009 Sum_probs=74.9
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhC-CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839 119 FNGIISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA 197 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~la~~~-~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~ 197 (335)
.+|++|||||||+|..++.++..+ .+|++.|.++.+++.+++|+.+|+.. ..++.+...|..+....
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~---~~~v~~i~~D~~~~l~~--------- 286 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLD---LSKAEFVRDDVFKLLRT--------- 286 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC---CCcEEEEEccHHHHHHH---------
Confidence 478999999999999999887765 49999999999999999999999742 13577777765442100
Q ss_pred cccccccCcchhhccCCccEEEEeccccCcc---------cHHHHHHHHHHhccCCC
Q 019839 198 SQERYSWNSSELKEVQRASVLLAADVIYSDD---------LTDALFHTLKRLMPLGS 245 (335)
Q Consensus 198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~~~---------~~~~L~~tl~~lL~~~~ 245 (335)
.....++||+|++--..|... ....++....++|+++|
T Consensus 287 ----------~~~~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG 333 (396)
T PRK15128 287 ----------YRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGG 333 (396)
T ss_pred ----------HHhcCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCe
Confidence 001134799999643333222 24455666788999887
No 89
>PRK05785 hypothetical protein; Provisional
Probab=98.89 E-value=7.7e-09 Score=94.06 Aligned_cols=88 Identities=14% Similarity=0.118 Sum_probs=69.1
Q ss_pred CCCeEEEEcCccCHHHHHHHHh-CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcc
Q 019839 120 NGIISLELGAGTGLAGILLSRV-AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS 198 (335)
Q Consensus 120 ~g~~VLELG~GtGL~gl~la~~-~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~ 198 (335)
.+.+|||||||||..+..+++. +.+|+++|.+++|++.++.+. . ....+..+. +
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~---~----------~~~~d~~~l-p----------- 105 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD---D----------KVVGSFEAL-P----------- 105 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc---c----------eEEechhhC-C-----------
Confidence 3679999999999999999888 689999999999999886531 0 111222111 0
Q ss_pred ccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccC
Q 019839 199 QERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPL 243 (335)
Q Consensus 199 ~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~ 243 (335)
-..++||+|+++.++++.+..+.+++.+.++|++
T Consensus 106 -----------~~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp 139 (226)
T PRK05785 106 -----------FRDKSFDVVMSSFALHASDNIEKVIAEFTRVSRK 139 (226)
T ss_pred -----------CCCCCEEEEEecChhhccCCHHHHHHHHHHHhcC
Confidence 0234899999999999999999999999999997
No 90
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.89 E-value=2.8e-08 Score=91.85 Aligned_cols=115 Identities=14% Similarity=0.149 Sum_probs=79.0
Q ss_pred hHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEE
Q 019839 101 AELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVR 178 (335)
Q Consensus 101 aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~ 178 (335)
.+..|.+.+.... .....+.+|||||||+|..++.+++. +.+|+++|+++.+++.+++|+..|+ +.+.
T Consensus 69 ~Te~Lv~~~l~~~--~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~--------~~~~ 138 (251)
T TIGR03704 69 RTEFLVDEAAALA--RPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG--------GTVH 138 (251)
T ss_pred cHHHHHHHHHHhh--cccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--------CEEE
Confidence 4566777665532 11123458999999999999999876 4699999999999999999998875 2455
Q ss_pred eccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCc--------------------------ccHHH
Q 019839 179 DLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSD--------------------------DLTDA 232 (335)
Q Consensus 179 ~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~--------------------------~~~~~ 232 (335)
..||.+..+.. ..++||+|++.-..... +....
T Consensus 139 ~~D~~~~l~~~---------------------~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~ 197 (251)
T TIGR03704 139 EGDLYDALPTA---------------------LRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRR 197 (251)
T ss_pred Eeechhhcchh---------------------cCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHH
Confidence 56665431100 12479999875433211 01347
Q ss_pred HHHHHHHhccCCCc
Q 019839 233 LFHTLKRLMPLGSK 246 (335)
Q Consensus 233 L~~tl~~lL~~~~~ 246 (335)
+++...++|+++|.
T Consensus 198 i~~~a~~~L~~gG~ 211 (251)
T TIGR03704 198 VAAGAPDWLAPGGH 211 (251)
T ss_pred HHHHHHHhcCCCCE
Confidence 78888899999874
No 91
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.89 E-value=3e-08 Score=94.06 Aligned_cols=103 Identities=12% Similarity=0.133 Sum_probs=82.0
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhC--CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCC
Q 019839 119 FNGIISLELGAGTGLAGILLSRVA--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS 196 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~la~~~--~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~ 196 (335)
-++.+|||+|||+|..++.+++.. .+|++.|. +.+++.+++|+...+. ..++++...|..+..
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl----~~rv~~~~~d~~~~~---------- 212 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGV----ADRMRGIAVDIYKES---------- 212 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCc----cceEEEEecCccCCC----------
Confidence 456899999999999999999883 68999998 6899999999987764 357888888866431
Q ss_pred ccccccccCcchhhccCCccEEEEeccccCcc--cHHHHHHHHHHhccCCCcceeec
Q 019839 197 ASQERYSWNSSELKEVQRASVLLAADVIYSDD--LTDALFHTLKRLMPLGSKKVLVN 251 (335)
Q Consensus 197 ~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~--~~~~L~~tl~~lL~~~~~~~~~~ 251 (335)
...+|+|+.+-++|+.. ....+++.+.+.|+|||+.++.+
T Consensus 213 ---------------~~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d 254 (306)
T TIGR02716 213 ---------------YPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILD 254 (306)
T ss_pred ---------------CCCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 12469999999998653 44679999999999998765433
No 92
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.87 E-value=8.8e-09 Score=97.41 Aligned_cols=115 Identities=18% Similarity=0.251 Sum_probs=87.3
Q ss_pred CCCCCCCeEEEEcCccCHHHHHHHHhC-CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCC
Q 019839 116 SSDFNGIISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGN 194 (335)
Q Consensus 116 ~~~~~g~~VLELG~GtGL~gl~la~~~-~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~ 194 (335)
...|+||+|||+|||||++|+.+|+.| ++|++.|.+ .+.+.++..+..|+.. ..+++....-.+-.
T Consensus 56 ~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S-~ia~~a~~iv~~N~~~----~ii~vi~gkvEdi~-------- 122 (346)
T KOG1499|consen 56 KHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEAS-SIADFARKIVKDNGLE----DVITVIKGKVEDIE-------- 122 (346)
T ss_pred hhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEech-HHHHHHHHHHHhcCcc----ceEEEeecceEEEe--------
Confidence 467999999999999999999999997 589999998 7779999999999863 44555554422210
Q ss_pred CCccccccccCcchhhccCCccEEEE---eccccCcccHHHHHHHHHHhccCCCcceeeceEEEEEE
Q 019839 195 SSASQERYSWNSSELKEVQRASVLLA---ADVIYSDDLTDALFHTLKRLMPLGSKKVLVNMVLYLAL 258 (335)
Q Consensus 195 ~~~~~~~~~w~~~~~~~~~~fDlIla---sDviY~~~~~~~L~~tl~~lL~~~~~~~~~~p~i~ia~ 258 (335)
++ .++.|+|++ .-+++.....+..+-.=.+.|+++|-......++|++-
T Consensus 123 --------------LP-~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~~a~l~l~~ 174 (346)
T KOG1499|consen 123 --------------LP-VEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYPDRATLYLAA 174 (346)
T ss_pred --------------cC-ccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEccccceEEEEe
Confidence 11 358999997 56677778888888888999999885543344455543
No 93
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.87 E-value=3.2e-08 Score=92.38 Aligned_cols=104 Identities=15% Similarity=0.110 Sum_probs=74.1
Q ss_pred CCCCCCeEEEEcCccCHHHHHHHHhCC-EEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCC
Q 019839 117 SDFNGIISLELGAGTGLAGILLSRVAW-TVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS 195 (335)
Q Consensus 117 ~~~~g~~VLELG~GtGL~gl~la~~~~-~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~ 195 (335)
..++|++|||+|||.|.-+.-++..|+ .|+++|.++..+ ++..+...-. .....+..+.-+-..
T Consensus 112 ~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~--~QF~~i~~~l----g~~~~~~~lplgvE~--------- 176 (315)
T PF08003_consen 112 PDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFY--LQFEAIKHFL----GQDPPVFELPLGVED--------- 176 (315)
T ss_pred CCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHH--HHHHHHHHHh----CCCccEEEcCcchhh---------
Confidence 468999999999999999999999975 799999876333 3322221111 011222333222110
Q ss_pred CccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839 196 SASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV 248 (335)
Q Consensus 196 ~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~ 248 (335)
+...+.||+|++.-|+||....-..++.++..|++||..+
T Consensus 177 -------------Lp~~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLv 216 (315)
T PF08003_consen 177 -------------LPNLGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELV 216 (315)
T ss_pred -------------ccccCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEE
Confidence 1124589999999999999999999999999999998765
No 94
>PRK04266 fibrillarin; Provisional
Probab=98.86 E-value=9.6e-08 Score=86.87 Aligned_cols=121 Identities=14% Similarity=0.163 Sum_probs=78.3
Q ss_pred ccceeehh------HHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhC--CEEEEecCchHHHHHHHHHHHHc
Q 019839 94 VGLQVWKA------ELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVA--WTVFLTDHGNYILDNCAKNVQLN 165 (335)
Q Consensus 94 ~G~~vW~a------a~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~--~~V~~TD~~~~~l~~~~~Nv~~N 165 (335)
.+.++|.. +.+|+.+ ... ...+|.+|||+|||+|..++.+++.. .+|++.|.++.|++.+.+++...
T Consensus 45 ~~~~~~~~~r~~~~~~ll~~~--~~l---~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~ 119 (226)
T PRK04266 45 VEYREWNPRRSKLAAAILKGL--KNF---PIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER 119 (226)
T ss_pred cEEEEECCCccchHHHHHhhH--hhC---CCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc
Confidence 34555554 5555555 121 44678899999999999999999873 58999999999999888776542
Q ss_pred cCCCCCCCeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCC
Q 019839 166 SGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGS 245 (335)
Q Consensus 166 ~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~ 245 (335)
.++.+...|-...... ......||+|+. |+- ++.....+++.+.++|+|||
T Consensus 120 -------~nv~~i~~D~~~~~~~--------------------~~l~~~~D~i~~-d~~-~p~~~~~~L~~~~r~LKpGG 170 (226)
T PRK04266 120 -------KNIIPILADARKPERY--------------------AHVVEKVDVIYQ-DVA-QPNQAEIAIDNAEFFLKDGG 170 (226)
T ss_pred -------CCcEEEECCCCCcchh--------------------hhccccCCEEEE-CCC-ChhHHHHHHHHHHHhcCCCc
Confidence 2344444443221000 011246999984 221 22233456899999999998
Q ss_pred cce
Q 019839 246 KKV 248 (335)
Q Consensus 246 ~~~ 248 (335)
..+
T Consensus 171 ~lv 173 (226)
T PRK04266 171 YLL 173 (226)
T ss_pred EEE
Confidence 654
No 95
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.86 E-value=4e-08 Score=103.18 Aligned_cols=102 Identities=19% Similarity=0.121 Sum_probs=77.0
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCC-EEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839 119 FNGIISLELGAGTGLAGILLSRVAW-TVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA 197 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~la~~~~-~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~ 197 (335)
.+|++|||||||+|..|+.+++.|+ +|+++|+++.+++.+++|++.|+.. ..++++...|..+...
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~---~~~v~~i~~D~~~~l~---------- 603 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLS---GRQHRLIQADCLAWLK---------- 603 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC---ccceEEEEccHHHHHH----------
Confidence 4789999999999999999999865 7999999999999999999999742 1357777766433210
Q ss_pred cccccccCcchhhccCCccEEEEecccc-----------CcccHHHHHHHHHHhccCCC
Q 019839 198 SQERYSWNSSELKEVQRASVLLAADVIY-----------SDDLTDALFHTLKRLMPLGS 245 (335)
Q Consensus 198 ~~~~~~w~~~~~~~~~~fDlIlasDviY-----------~~~~~~~L~~tl~~lL~~~~ 245 (335)
....+||+|++----+ .......++..+.++|+++|
T Consensus 604 ------------~~~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG 650 (702)
T PRK11783 604 ------------EAREQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGG 650 (702)
T ss_pred ------------HcCCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCC
Confidence 0124799999842222 12345678888899999987
No 96
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.85 E-value=6e-08 Score=86.74 Aligned_cols=99 Identities=17% Similarity=0.114 Sum_probs=79.4
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhC---CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCC
Q 019839 119 FNGIISLELGAGTGLAGILLSRVA---WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS 195 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~la~~~---~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~ 195 (335)
.++.+|||+|||+|..+..+++.. .+++++|.++.+++.++.|.. . ..++.+...|..+...
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~-----~~~i~~~~~d~~~~~~-------- 102 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--L-----PLNIEFIQADAEALPF-------- 102 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--c-----CCCceEEecchhcCCC--------
Confidence 378899999999999998888774 389999999999999998875 1 2456666665544210
Q ss_pred CccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcc
Q 019839 196 SASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKK 247 (335)
Q Consensus 196 ~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~ 247 (335)
..++||+|+++.++.+......+++.+.++|+++|..
T Consensus 103 ---------------~~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l 139 (223)
T TIGR01934 103 ---------------EDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRL 139 (223)
T ss_pred ---------------CCCcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEE
Confidence 1247999999999999889999999999999998854
No 97
>KOG2497 consensus Predicted methyltransferase [General function prediction only]
Probab=98.85 E-value=4.5e-10 Score=103.51 Aligned_cols=175 Identities=23% Similarity=0.181 Sum_probs=112.8
Q ss_pred ecccccCCCCccceeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHH
Q 019839 84 QHNITSLIPSVGLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQ 163 (335)
Q Consensus 84 ~~~~~~~~~~~G~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~ 163 (335)
.|........+|..+|++++.|++++.++. ....+++|.++|||+++..+.+++..-.|...|-...+.-++..|..
T Consensus 57 ~~~~~~~~~~tg~~~w~~al~L~~~l~~~~---d~~~~~~v~~l~~gi~~~~~~~a~~~~~v~~~~~~~~~~~~l~~~~~ 133 (262)
T KOG2497|consen 57 SHSLRFLLARTGLSVWESALSLEADLRDKP---DLSSELTVEELGCDIALKHVLAARVPDCVVTLDSLRCAGLLLEEIIL 133 (262)
T ss_pred chHHHHHHHHhccccchHHHHHHHHHhhCc---ccccccchHhhccCHHHHHHHHHhcccceecCCccCcHHHHHHHHHh
Confidence 344446667899999999999999999983 55889999999999999998888887656555555444444444444
Q ss_pred HccCCCCCCCeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccC
Q 019839 164 LNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPL 243 (335)
Q Consensus 164 ~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~ 243 (335)
.|..... ...-+.-.++|..... ..|. ....+|+|+++||+|+ ....+++.++..+|..
T Consensus 134 ~~~~~~~-~~~~~~~~~~~~~~~~--------------~~~~-----~~~~~dll~~AdV~yd-~~~~~~~~~~~~lL~~ 192 (262)
T KOG2497|consen 134 LSRDLSL-EVRDSAPELNQAFLES--------------KPET-----SQEFTDLLGGADVIYD-TELRHLLETLMTLLLR 192 (262)
T ss_pred ccccccc-cccccchhHHHHHHhc--------------Cccc-----ccchhhheeccCeeeh-hhhhHHHHHHHHHHHh
Confidence 4332111 2222233333332211 1111 1124999999999999 8888888888887765
Q ss_pred CCcceeeceEEEEEEeeeccccccchhhhhhhhhHHHHHH
Q 019839 244 GSKKVLVNMVLYLALEKRYNFSLNDLDVVANGYSHFRSYI 283 (335)
Q Consensus 244 ~~~~~~~~p~i~ia~~~R~~ft~~~~d~v~~~~~~f~~~l 283 (335)
..+.. -.-...++.+.+..|+..+....+..|..|...-
T Consensus 193 ~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~n 231 (262)
T KOG2497|consen 193 WRGTG-LLTLLTIALESIVVFTSVDTKSLLSVYENFRLNN 231 (262)
T ss_pred ccccc-hhhhhhhcccceEEEeehhhhhhhhhhhhhhhhc
Confidence 43321 0011455556666776666677777777776644
No 98
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.83 E-value=2.2e-08 Score=96.89 Aligned_cols=161 Identities=13% Similarity=0.142 Sum_probs=90.9
Q ss_pred hHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEec
Q 019839 101 AELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDL 180 (335)
Q Consensus 101 aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~l 180 (335)
.+..|.+++.... ...++ +||||-||+|..|+.+|+.+++|+++|..+.+++.++.|+..|+. .++++...
T Consensus 181 ~~~~l~~~~~~~l---~~~~~-~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~~N~i-----~n~~f~~~ 251 (352)
T PF05958_consen 181 QNEKLYEQALEWL---DLSKG-DVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAKLNGI-----DNVEFIRG 251 (352)
T ss_dssp HHHHHHHHHHHHC---TT-TT-EEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHHHTT-------SEEEEE-
T ss_pred HHHHHHHHHHHHh---hcCCC-cEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHHHcCC-----CcceEEEe
Confidence 3556667766653 22233 899999999999999999999999999999999999999999983 56777655
Q ss_pred cCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCccc---HHHHHHHHHHhccCCCcceeeceEEEEE
Q 019839 181 NWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDL---TDALFHTLKRLMPLGSKKVLVNMVLYLA 257 (335)
Q Consensus 181 dW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~---~~~L~~tl~~lL~~~~~~~~~~p~i~ia 257 (335)
+-.+....... ...+.--.........+|+||. |++- .+.+++.+.+ . +.+ +|+|
T Consensus 252 ~~~~~~~~~~~-------~r~~~~~~~~~~~~~~~d~vil-----DPPR~G~~~~~~~~~~~---~--~~i-----vYvS 309 (352)
T PF05958_consen 252 DAEDFAKALAK-------AREFNRLKGIDLKSFKFDAVIL-----DPPRAGLDEKVIELIKK---L--KRI-----VYVS 309 (352)
T ss_dssp -SHHCCCHHCC-------S-GGTTGGGS-GGCTTESEEEE--------TT-SCHHHHHHHHH---S--SEE-----EEEE
T ss_pred eccchhHHHHh-------hHHHHhhhhhhhhhcCCCEEEE-----cCCCCCchHHHHHHHhc---C--CeE-----EEEE
Confidence 42221100000 0000000000001236898876 7654 3344444433 2 457 9999
Q ss_pred EeeeccccccchhhhhhhhhHHHHHHhhhhcccccccccCCCeeeEEecCCC-CCccccccCC
Q 019839 258 LEKRYNFSLNDLDVVANGYSHFRSYIMEEGEHRRFERESFPAFVGKCIDLNE-FPQYVREYDR 319 (335)
Q Consensus 258 ~~~R~~ft~~~~d~v~~~~~~f~~~l~~~~~~~~~~~~~~~~f~v~~i~~~~-~pq~~~~yer 319 (335)
| ++...+.....+ . .||.++++.+.| |||.. |.|.
T Consensus 310 C---------nP~tlaRDl~~L----~-------------~~y~~~~v~~~DmFP~T~-HvE~ 345 (352)
T PF05958_consen 310 C---------NPATLARDLKIL----K-------------EGYKLEKVQPVDMFPQTH-HVET 345 (352)
T ss_dssp S----------HHHHHHHHHHH----H-------------CCEEEEEEEEE-SSTTSS---EE
T ss_pred C---------CHHHHHHHHHHH----h-------------hcCEEEEEEEeecCCCCC-cEEE
Confidence 8 333333333222 1 268888875555 99988 6654
No 99
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.83 E-value=1.8e-09 Score=96.29 Aligned_cols=139 Identities=22% Similarity=0.233 Sum_probs=92.0
Q ss_pred HHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEec-
Q 019839 102 ELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDL- 180 (335)
Q Consensus 102 a~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~l- 180 (335)
...|++.|...- .-.-+++|||||||||.|..+-.++.+.++.|++..|++.+...=.. ..+.+.++
T Consensus 111 P~~l~emI~~~~----~g~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eKg~Y--------D~L~~Aea~ 178 (287)
T COG4976 111 PELLAEMIGKAD----LGPFRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKGLY--------DTLYVAEAV 178 (287)
T ss_pred HHHHHHHHHhcc----CCccceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhccch--------HHHHHHHHH
Confidence 455666664431 11247999999999999999999999999999999999877543111 11111111
Q ss_pred cCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcceeeceEEEEEEee
Q 019839 181 NWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLVNMVLYLALEK 260 (335)
Q Consensus 181 dW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~~~~p~i~ia~~~ 260 (335)
.+... ...++||+|.|+||+-+-...+.++-....+|+++|- +-++.|.
T Consensus 179 ~Fl~~------------------------~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGl-------faFSvE~ 227 (287)
T COG4976 179 LFLED------------------------LTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGL-------FAFSVET 227 (287)
T ss_pred HHhhh------------------------ccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCce-------EEEEecc
Confidence 12221 1345899999999999999999999999999999883 3344433
Q ss_pred ecc---ccccchhhhhhhhhHHHHHHhhhh
Q 019839 261 RYN---FSLNDLDVVANGYSHFRSYIMEEG 287 (335)
Q Consensus 261 R~~---ft~~~~d~v~~~~~~f~~~l~~~~ 287 (335)
-.. |.+ .-+.-|.|-++|+++..
T Consensus 228 l~~~~~f~l----~ps~RyAH~~~YVr~~l 253 (287)
T COG4976 228 LPDDGGFVL----GPSQRYAHSESYVRALL 253 (287)
T ss_pred cCCCCCeec----chhhhhccchHHHHHHH
Confidence 211 111 11334667677776543
No 100
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.82 E-value=7.5e-08 Score=89.48 Aligned_cols=114 Identities=17% Similarity=0.254 Sum_probs=82.9
Q ss_pred hHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhC--CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEE
Q 019839 101 AELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVA--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVR 178 (335)
Q Consensus 101 aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~--~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~ 178 (335)
.+..|.+++.... ...++.+|||+|||+|..++.++... .+|+++|+++.+++.++.|+..+. ..++.+.
T Consensus 92 ~te~l~~~~~~~~---~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~-----~~~i~~~ 163 (275)
T PRK09328 92 ETEELVEWALEAL---LLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGL-----GARVEFL 163 (275)
T ss_pred CcHHHHHHHHHhc---cccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCC-----CCcEEEE
Confidence 3456666666432 33567899999999999999999884 799999999999999999998222 3568888
Q ss_pred eccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccC---------------c-----------ccHHH
Q 019839 179 DLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYS---------------D-----------DLTDA 232 (335)
Q Consensus 179 ~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~---------------~-----------~~~~~ 232 (335)
..||.+... .++||+|++.-.... + .....
T Consensus 164 ~~d~~~~~~------------------------~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~ 219 (275)
T PRK09328 164 QGDWFEPLP------------------------GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRR 219 (275)
T ss_pred EccccCcCC------------------------CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHH
Confidence 888755311 247999988432211 1 12466
Q ss_pred HHHHHHHhccCCCc
Q 019839 233 LFHTLKRLMPLGSK 246 (335)
Q Consensus 233 L~~tl~~lL~~~~~ 246 (335)
+++.+.++|+++|.
T Consensus 220 ~~~~~~~~Lk~gG~ 233 (275)
T PRK09328 220 IIEQAPRYLKPGGW 233 (275)
T ss_pred HHHHHHHhcccCCE
Confidence 77888899999874
No 101
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.81 E-value=5.7e-08 Score=74.44 Aligned_cols=97 Identities=19% Similarity=0.158 Sum_probs=77.3
Q ss_pred eEEEEcCccCHHHHHHHH-hCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCccccc
Q 019839 123 ISLELGAGTGLAGILLSR-VAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQER 201 (335)
Q Consensus 123 ~VLELG~GtGL~gl~la~-~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~ 201 (335)
+|+|+|||+|..+..+++ .+.+++++|.++.+++.++++...+. ..++.+...++.+...
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-------------- 61 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALL-----ADNVEVLKGDAEELPP-------------- 61 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhccc-----ccceEEEEcChhhhcc--------------
Confidence 589999999999988887 46799999999999988886544433 3567777777665421
Q ss_pred cccCcchhhccCCccEEEEeccccC-cccHHHHHHHHHHhccCCCc
Q 019839 202 YSWNSSELKEVQRASVLLAADVIYS-DDLTDALFHTLKRLMPLGSK 246 (335)
Q Consensus 202 ~~w~~~~~~~~~~fDlIlasDviY~-~~~~~~L~~tl~~lL~~~~~ 246 (335)
....++|+|++..+++. ......+++.+.++++++|.
T Consensus 62 --------~~~~~~d~i~~~~~~~~~~~~~~~~l~~~~~~l~~~g~ 99 (107)
T cd02440 62 --------EADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGV 99 (107)
T ss_pred --------ccCCceEEEEEccceeehhhHHHHHHHHHHHHcCCCCE
Confidence 02357999999999998 88999999999999998773
No 102
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.81 E-value=8.5e-08 Score=86.46 Aligned_cols=121 Identities=11% Similarity=0.113 Sum_probs=81.4
Q ss_pred hHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCC-------CCCCC
Q 019839 101 AELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGV-------FSHQG 173 (335)
Q Consensus 101 aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~-------~~~~~ 173 (335)
..-.|.+++... ..-++.+||++|||.|.-++.+|..|.+|+++|+++.+++.+.......... .....
T Consensus 19 p~~~l~~~~~~l----~~~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (213)
T TIGR03840 19 VNPLLVKHWPAL----GLPAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAG 94 (213)
T ss_pred CCHHHHHHHHhh----CCCCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecC
Confidence 345666776542 1136779999999999999999999999999999999998753211110000 00023
Q ss_pred eeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccC--cccHHHHHHHHHHhccCCCcc
Q 019839 174 SVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYS--DDLTDALFHTLKRLMPLGSKK 247 (335)
Q Consensus 174 ~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~--~~~~~~L~~tl~~lL~~~~~~ 247 (335)
++++...|..+.... ..+.||.|+..-++.+ ++.....++.+.++|+|+|..
T Consensus 95 ~v~~~~~D~~~~~~~----------------------~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ 148 (213)
T TIGR03840 95 NIEIFCGDFFALTAA----------------------DLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQ 148 (213)
T ss_pred ceEEEEccCCCCCcc----------------------cCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeE
Confidence 466666666553210 1247999998776654 345577899999999998753
No 103
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.80 E-value=9.9e-08 Score=84.63 Aligned_cols=99 Identities=11% Similarity=0.088 Sum_probs=71.3
Q ss_pred CCCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCC
Q 019839 119 FNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS 196 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~ 196 (335)
.++.+|||+|||+|..++.+++. +.+|+++|.++.+++.+++|++.++. .++++...|..+....
T Consensus 39 ~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~-----~~v~~~~~d~~~~~~~-------- 105 (196)
T PRK07402 39 EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGV-----KNVEVIEGSAPECLAQ-------- 105 (196)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-----CCeEEEECchHHHHhh--------
Confidence 46789999999999999998876 47999999999999999999988763 3566665554321100
Q ss_pred ccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839 197 ASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV 248 (335)
Q Consensus 197 ~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~ 248 (335)
....+|.|+.. .......+++.+.++|+++|..+
T Consensus 106 --------------~~~~~d~v~~~----~~~~~~~~l~~~~~~LkpgG~li 139 (196)
T PRK07402 106 --------------LAPAPDRVCIE----GGRPIKEILQAVWQYLKPGGRLV 139 (196)
T ss_pred --------------CCCCCCEEEEE----CCcCHHHHHHHHHHhcCCCeEEE
Confidence 01234554431 12345788999999999988543
No 104
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.78 E-value=4.4e-07 Score=79.26 Aligned_cols=100 Identities=13% Similarity=0.131 Sum_probs=80.2
Q ss_pred CCCCCCeEEEEcCccCHHHHHHHHhC--CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCC
Q 019839 117 SDFNGIISLELGAGTGLAGILLSRVA--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGN 194 (335)
Q Consensus 117 ~~~~g~~VLELG~GtGL~gl~la~~~--~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~ 194 (335)
..-+|.+++|+|||||-+++-+|+.+ .+|++.|.++++++.+++|.+..+ ..++.+.+.+=-+..
T Consensus 31 ~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg-----~~n~~vv~g~Ap~~L-------- 97 (187)
T COG2242 31 RPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFG-----VDNLEVVEGDAPEAL-------- 97 (187)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhC-----CCcEEEEeccchHhh--------
Confidence 45688999999999999999999664 699999999999999999999987 467888777533321
Q ss_pred CCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839 195 SSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV 248 (335)
Q Consensus 195 ~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~ 248 (335)
.....||.|+-.- -...+.+++++...|+++|+.+
T Consensus 98 ---------------~~~~~~daiFIGG----g~~i~~ile~~~~~l~~ggrlV 132 (187)
T COG2242 98 ---------------PDLPSPDAIFIGG----GGNIEEILEAAWERLKPGGRLV 132 (187)
T ss_pred ---------------cCCCCCCEEEECC----CCCHHHHHHHHHHHcCcCCeEE
Confidence 1223688887653 3677889999999999998654
No 105
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=1.1e-07 Score=84.54 Aligned_cols=116 Identities=19% Similarity=0.209 Sum_probs=85.0
Q ss_pred cceeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCe
Q 019839 95 GLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGS 174 (335)
Q Consensus 95 G~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~ 174 (335)
+.|.=.+....|..+..- ..-+|.+|||+|||+|..+-++|+.+.+|+..|+.+.+.+.+++|++..+ ..+
T Consensus 51 ~gqtis~P~~vA~m~~~L----~~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg-----~~n 121 (209)
T COG2518 51 CGQTISAPHMVARMLQLL----ELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLG-----YEN 121 (209)
T ss_pred CCceecCcHHHHHHHHHh----CCCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcC-----CCc
Confidence 333333444555554332 55788999999999999999999998899999999999999999999877 456
Q ss_pred eEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839 175 VHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV 248 (335)
Q Consensus 175 v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~ 248 (335)
+.++..|=...++ ...+||.|+..-..= .+-+.+.+-|++||+.+
T Consensus 122 V~v~~gDG~~G~~-----------------------~~aPyD~I~Vtaaa~------~vP~~Ll~QL~~gGrlv 166 (209)
T COG2518 122 VTVRHGDGSKGWP-----------------------EEAPYDRIIVTAAAP------EVPEALLDQLKPGGRLV 166 (209)
T ss_pred eEEEECCcccCCC-----------------------CCCCcCEEEEeeccC------CCCHHHHHhcccCCEEE
Confidence 8888887555543 235899998743322 23344556788888765
No 106
>PRK04148 hypothetical protein; Provisional
Probab=98.77 E-value=4.3e-08 Score=81.58 Aligned_cols=67 Identities=18% Similarity=0.235 Sum_probs=54.1
Q ss_pred HHHHHHHhhcCCCCCCCCCeEEEEcCccCH-HHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccC
Q 019839 104 VLADFVMHKMCTSSDFNGIISLELGAGTGL-AGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNW 182 (335)
Q Consensus 104 ~La~~l~~~~~~~~~~~g~~VLELG~GtGL-~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW 182 (335)
.+++||..+. ...++++|||+|||.|. ++..+++.|..|+++|+++..++.++.+. +.+..-|+
T Consensus 3 ~i~~~l~~~~---~~~~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~------------~~~v~dDl 67 (134)
T PRK04148 3 TIAEFIAENY---EKGKNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKLG------------LNAFVDDL 67 (134)
T ss_pred HHHHHHHHhc---ccccCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhC------------CeEEECcC
Confidence 4788888775 34577899999999996 99999999999999999999887776542 46677777
Q ss_pred CCC
Q 019839 183 MNP 185 (335)
Q Consensus 183 ~~~ 185 (335)
.+.
T Consensus 68 f~p 70 (134)
T PRK04148 68 FNP 70 (134)
T ss_pred CCC
Confidence 765
No 107
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.76 E-value=2.9e-07 Score=92.47 Aligned_cols=102 Identities=17% Similarity=0.152 Sum_probs=76.9
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcc
Q 019839 119 FNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS 198 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~ 198 (335)
.++++|||||||+|..+..+++.+.+|++.|+++.+++.++. .|.. ..++.+...|......+
T Consensus 36 ~~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~---~~~~----~~~i~~~~~d~~~~~~~---------- 98 (475)
T PLN02336 36 YEGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNES---INGH----YKNVKFMCADVTSPDLN---------- 98 (475)
T ss_pred cCCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHH---Hhcc----CCceEEEEecccccccC----------
Confidence 467899999999999999999999999999999998875432 3321 24566666665432110
Q ss_pred ccccccCcchhhccCCccEEEEeccccCccc--HHHHHHHHHHhccCCCcce
Q 019839 199 QERYSWNSSELKEVQRASVLLAADVIYSDDL--TDALFHTLKRLMPLGSKKV 248 (335)
Q Consensus 199 ~~~~~w~~~~~~~~~~fDlIlasDviY~~~~--~~~L~~tl~~lL~~~~~~~ 248 (335)
....+||+|++..++|+-.. ...+++.+.++|+++|..+
T Consensus 99 -----------~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~ 139 (475)
T PLN02336 99 -----------ISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIF 139 (475)
T ss_pred -----------CCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEE
Confidence 01348999999999988654 6789999999999988544
No 108
>PLN03075 nicotianamine synthase; Provisional
Probab=98.75 E-value=8.9e-08 Score=89.94 Aligned_cols=101 Identities=14% Similarity=0.122 Sum_probs=78.8
Q ss_pred CCCeEEEEcCc-cCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCC
Q 019839 120 NGIISLELGAG-TGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS 195 (335)
Q Consensus 120 ~g~~VLELG~G-tGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~ 195 (335)
..++|+|+||| .|+.++.+++. +.++++.|.++++++.+++++...... ..++.+...|..+...
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL---~~rV~F~~~Da~~~~~-------- 191 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDL---SKRMFFHTADVMDVTE-------- 191 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCc---cCCcEEEECchhhccc--------
Confidence 77999999999 55888877754 468999999999999999999652221 3568888888765411
Q ss_pred CccccccccCcchhhccCCccEEEEeccccC-cccHHHHHHHHHHhccCCCc
Q 019839 196 SASQERYSWNSSELKEVQRASVLLAADVIYS-DDLTDALFHTLKRLMPLGSK 246 (335)
Q Consensus 196 ~~~~~~~~w~~~~~~~~~~fDlIlasDviY~-~~~~~~L~~tl~~lL~~~~~ 246 (335)
..++||+|++.=++|. .+....+++.+.+.|++||.
T Consensus 192 ---------------~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~ 228 (296)
T PLN03075 192 ---------------SLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGAL 228 (296)
T ss_pred ---------------ccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcE
Confidence 1358999999944454 37899999999999999884
No 109
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.74 E-value=1.4e-07 Score=90.54 Aligned_cols=113 Identities=13% Similarity=0.025 Sum_probs=82.3
Q ss_pred HHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCC
Q 019839 104 VLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWM 183 (335)
Q Consensus 104 ~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~ 183 (335)
.||..+.... ..-+|.+|||+|||+|...+.++..+.+|++.|+++.++..++.|++.++. .++.+...|..
T Consensus 169 ~la~~~~~l~---~~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~-----~~i~~~~~D~~ 240 (329)
T TIGR01177 169 KLARAMVNLA---RVTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGI-----EDFFVKRGDAT 240 (329)
T ss_pred HHHHHHHHHh---CCCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCC-----CCCeEEecchh
Confidence 3555554432 335688999999999999999998899999999999999999999988763 23555555544
Q ss_pred CCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccC----------cccHHHHHHHHHHhccCCCcce
Q 019839 184 NPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYS----------DDLTDALFHTLKRLMPLGSKKV 248 (335)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~----------~~~~~~L~~tl~~lL~~~~~~~ 248 (335)
+... ....||+|++.-. |. ......+++.+.++|+++|..+
T Consensus 241 ~l~~-----------------------~~~~~D~Iv~dPP-yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv 291 (329)
T TIGR01177 241 KLPL-----------------------SSESVDAIATDPP-YGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIV 291 (329)
T ss_pred cCCc-----------------------ccCCCCEEEECCC-CcCcccccCCchHHHHHHHHHHHHHHccCCcEEE
Confidence 3210 1247999988422 21 1336789999999999988654
No 110
>PRK06922 hypothetical protein; Provisional
Probab=98.74 E-value=8.6e-08 Score=98.08 Aligned_cols=104 Identities=13% Similarity=0.191 Sum_probs=76.2
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCC
Q 019839 118 DFNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS 195 (335)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~ 195 (335)
..++.+|||+|||+|..+..+++. +.+|+++|+++.|++.++.+...+. .++.+...|-.+. +.
T Consensus 416 ~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g------~~ie~I~gDa~dL-p~------- 481 (677)
T PRK06922 416 YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG------RSWNVIKGDAINL-SS------- 481 (677)
T ss_pred hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC------CCeEEEEcchHhC-cc-------
Confidence 357889999999999988887765 5799999999999999998876543 2344444443321 00
Q ss_pred CccccccccCcchhhccCCccEEEEeccccC-------------cccHHHHHHHHHHhccCCCcce
Q 019839 196 SASQERYSWNSSELKEVQRASVLLAADVIYS-------------DDLTDALFHTLKRLMPLGSKKV 248 (335)
Q Consensus 196 ~~~~~~~~w~~~~~~~~~~fDlIlasDviY~-------------~~~~~~L~~tl~~lL~~~~~~~ 248 (335)
.-..++||+|+++-++++ ......+++.+.++|+|||..+
T Consensus 482 -------------~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLI 534 (677)
T PRK06922 482 -------------SFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRII 534 (677)
T ss_pred -------------ccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEE
Confidence 002347999999877753 2456788999999999998654
No 111
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.73 E-value=1.2e-07 Score=84.04 Aligned_cols=102 Identities=12% Similarity=0.046 Sum_probs=74.2
Q ss_pred CCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839 120 NGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA 197 (335)
Q Consensus 120 ~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~ 197 (335)
.+.+|||||||+|..++.+|+. ..+|++.|+++.+++.+++|+..++ ..++.+...|..+....
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~-----l~ni~~i~~d~~~~~~~--------- 81 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLG-----LKNLHVLCGDANELLDK--------- 81 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhC-----CCCEEEEccCHHHHHHh---------
Confidence 4568999999999999999987 4689999999999999999998775 34677777765432110
Q ss_pred cccccccCcchhhccCCccEEEEe--ccccCcc------cHHHHHHHHHHhccCCCc
Q 019839 198 SQERYSWNSSELKEVQRASVLLAA--DVIYSDD------LTDALFHTLKRLMPLGSK 246 (335)
Q Consensus 198 ~~~~~~w~~~~~~~~~~fDlIlas--DviY~~~------~~~~L~~tl~~lL~~~~~ 246 (335)
....+.+|.|+.. |.-+... ..+.+++.+.++|++||.
T Consensus 82 -----------~~~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~ 127 (194)
T TIGR00091 82 -----------FFPDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGV 127 (194)
T ss_pred -----------hCCCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCE
Confidence 0112368888875 2222111 126799999999999883
No 112
>PRK06202 hypothetical protein; Provisional
Probab=98.73 E-value=5.3e-08 Score=88.62 Aligned_cols=93 Identities=19% Similarity=0.100 Sum_probs=66.0
Q ss_pred CCCCeEEEEcCccCHHHHHHHHh----C--CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccC
Q 019839 119 FNGIISLELGAGTGLAGILLSRV----A--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSL 192 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~la~~----~--~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~ 192 (335)
.++.+|||||||+|..+..+++. | .+|+++|+++++++.++.+...++ +.+...+-... +
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~--------~~~~~~~~~~l-~----- 124 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPG--------VTFRQAVSDEL-V----- 124 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCC--------CeEEEEecccc-c-----
Confidence 45679999999999988887753 3 489999999999999988765332 22222211111 0
Q ss_pred CCCCccccccccCcchhhccCCccEEEEeccccCccc--HHHHHHHHHHhcc
Q 019839 193 GNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDL--TDALFHTLKRLMP 242 (335)
Q Consensus 193 ~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~--~~~L~~tl~~lL~ 242 (335)
...++||+|+++.++++-+. ...+++.+.++++
T Consensus 125 -----------------~~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~ 159 (232)
T PRK06202 125 -----------------AEGERFDVVTSNHFLHHLDDAEVVRLLADSAALAR 159 (232)
T ss_pred -----------------ccCCCccEEEECCeeecCChHHHHHHHHHHHHhcC
Confidence 01348999999999998765 3457888888876
No 113
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.73 E-value=1.4e-07 Score=95.56 Aligned_cols=99 Identities=19% Similarity=0.219 Sum_probs=73.9
Q ss_pred CCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839 120 NGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA 197 (335)
Q Consensus 120 ~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~ 197 (335)
++.+|||+|||+|..++.+++. +.+|+++|+++.+++.++.|+..|+. ..++.+...||.+..+
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l----~~~v~~~~~D~~~~~~---------- 203 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEV----TDRIQIIHSNWFENIE---------- 203 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC----ccceeeeecchhhhCc----------
Confidence 3568999999999999988875 57999999999999999999988863 2467777777754311
Q ss_pred cccccccCcchhhccCCccEEEEec--------------cc-cCc-----------ccHHHHHHHHHHhccCCCc
Q 019839 198 SQERYSWNSSELKEVQRASVLLAAD--------------VI-YSD-----------DLTDALFHTLKRLMPLGSK 246 (335)
Q Consensus 198 ~~~~~~w~~~~~~~~~~fDlIlasD--------------vi-Y~~-----------~~~~~L~~tl~~lL~~~~~ 246 (335)
.++||+|++.- +. |.+ +....+++.+.++|+++|.
T Consensus 204 --------------~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~ 264 (506)
T PRK01544 204 --------------KQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGK 264 (506)
T ss_pred --------------CCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCE
Confidence 23799999832 21 211 1245567788889999874
No 114
>PHA03411 putative methyltransferase; Provisional
Probab=98.72 E-value=2.9e-07 Score=85.49 Aligned_cols=103 Identities=9% Similarity=-0.034 Sum_probs=72.2
Q ss_pred CCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839 120 NGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA 197 (335)
Q Consensus 120 ~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~ 197 (335)
.+.+|||+|||+|.+++.+++. +.+|+++|+++.+++.+++|.. ++.+...|..+..
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~----------~v~~v~~D~~e~~----------- 122 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP----------EAEWITSDVFEFE----------- 122 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc----------CCEEEECchhhhc-----------
Confidence 3468999999999999988776 4699999999999999988631 2334444432210
Q ss_pred cccccccCcchhhccCCccEEEEeccccCccc--------------------HHHHHHHHHHhccCCCcceeeceEEEEE
Q 019839 198 SQERYSWNSSELKEVQRASVLLAADVIYSDDL--------------------TDALFHTLKRLMPLGSKKVLVNMVLYLA 257 (335)
Q Consensus 198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~--------------------~~~L~~tl~~lL~~~~~~~~~~p~i~ia 257 (335)
...+||+||+...+++... ...+++....+|+++|. ++++
T Consensus 123 -------------~~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~-------~~~~ 182 (279)
T PHA03411 123 -------------SNEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGS-------AGFA 182 (279)
T ss_pred -------------ccCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCce-------EEEE
Confidence 1247999999888876311 35677777888888772 5555
Q ss_pred Eeeecc
Q 019839 258 LEKRYN 263 (335)
Q Consensus 258 ~~~R~~ 263 (335)
+.-+..
T Consensus 183 yss~~~ 188 (279)
T PHA03411 183 YSGRPY 188 (279)
T ss_pred Eecccc
Confidence 655443
No 115
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.72 E-value=1.5e-07 Score=83.34 Aligned_cols=98 Identities=16% Similarity=0.142 Sum_probs=71.4
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHhCC-EEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCC
Q 019839 118 DFNGIISLELGAGTGLAGILLSRVAW-TVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS 196 (335)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~la~~~~-~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~ 196 (335)
.+.|++||||+||+|.+|+.++..|+ +|++.|.++.+++.+++|++.|+. ..++.+...|-.+....
T Consensus 47 ~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~----~~~~~~~~~D~~~~l~~-------- 114 (189)
T TIGR00095 47 EIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKS----GEQAEVVRNSALRALKF-------- 114 (189)
T ss_pred hcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCC----cccEEEEehhHHHHHHH--------
Confidence 36899999999999999999999975 899999999999999999999974 23566665554221000
Q ss_pred ccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHH
Q 019839 197 ASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKR 239 (335)
Q Consensus 197 ~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~ 239 (335)
......++.||..|.-|.....+.++..+..
T Consensus 115 ------------~~~~~~~~dvv~~DPPy~~~~~~~~l~~l~~ 145 (189)
T TIGR00095 115 ------------LAKKPTFDNVIYLDPPFFNGALQALLELCEN 145 (189)
T ss_pred ------------hhccCCCceEEEECcCCCCCcHHHHHHHHHH
Confidence 0011245666777888877777777666644
No 116
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.68 E-value=3.3e-07 Score=87.51 Aligned_cols=109 Identities=20% Similarity=0.169 Sum_probs=75.6
Q ss_pred HHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhC---CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEE
Q 019839 102 ELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVA---WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVR 178 (335)
Q Consensus 102 a~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~---~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~ 178 (335)
..+++..+ +.. ...++.+|||+|||+|..++.+++.. .+|++.|.++.+++.+++|+..++. .++.+.
T Consensus 66 p~l~a~ll-~~L---~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~-----~nV~~i 136 (322)
T PRK13943 66 PSLMALFM-EWV---GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI-----ENVIFV 136 (322)
T ss_pred HHHHHHHH-Hhc---CCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CcEEEE
Confidence 44445444 332 34578899999999999999998863 3699999999999999999988763 456666
Q ss_pred eccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839 179 DLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV 248 (335)
Q Consensus 179 ~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~ 248 (335)
..|..+..+ ...+||+|+.+-.+. .+...+.+.|+++|..+
T Consensus 137 ~gD~~~~~~-----------------------~~~~fD~Ii~~~g~~------~ip~~~~~~LkpgG~Lv 177 (322)
T PRK13943 137 CGDGYYGVP-----------------------EFAPYDVIFVTVGVD------EVPETWFTQLKEGGRVI 177 (322)
T ss_pred eCChhhccc-----------------------ccCCccEEEECCchH------HhHHHHHHhcCCCCEEE
Confidence 655433211 124799999863322 23345667889988644
No 117
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.67 E-value=2.9e-07 Score=83.33 Aligned_cols=116 Identities=11% Similarity=0.150 Sum_probs=79.8
Q ss_pred HHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCC----------CC
Q 019839 102 ELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVF----------SH 171 (335)
Q Consensus 102 a~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~----------~~ 171 (335)
.-.|.+|+... ...++.+||++|||.|.-++.+|..|.+|++.|+++.+++.+.. .|+... ..
T Consensus 23 ~~~L~~~~~~~----~~~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~ 95 (218)
T PRK13255 23 NPLLQKYWPAL----ALPAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQ 95 (218)
T ss_pred CHHHHHHHHhh----CCCCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHH---HcCCCccccccccccccc
Confidence 34566666432 12357799999999999999999999999999999999987632 222110 00
Q ss_pred CCeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccC--cccHHHHHHHHHHhccCCCc
Q 019839 172 QGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYS--DDLTDALFHTLKRLMPLGSK 246 (335)
Q Consensus 172 ~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~--~~~~~~L~~tl~~lL~~~~~ 246 (335)
..++++...|..+..+ ...+.||+|+.+-++.+ ++.-...++.|.++|+|||.
T Consensus 96 ~~~v~~~~~D~~~l~~----------------------~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~ 150 (218)
T PRK13255 96 AGEITIYCGDFFALTA----------------------ADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCR 150 (218)
T ss_pred cCceEEEECcccCCCc----------------------ccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCe
Confidence 2345555555444311 11247999998776654 35667889999999999885
No 118
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.67 E-value=3.3e-07 Score=83.81 Aligned_cols=104 Identities=11% Similarity=0.084 Sum_probs=76.3
Q ss_pred CCCCeEEEEcCccCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCC
Q 019839 119 FNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS 195 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~ 195 (335)
.++++|||+|||+|..++.+++. +.+|++.|+++++++.+++|++.++. ..++.+...|..+..+...
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl----~~~i~~~~gda~~~L~~l~----- 137 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGV----DHKINFIQSDALSALDQLL----- 137 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEEccHHHHHHHHH-----
Confidence 57889999999999988888765 46999999999999999999999875 3567887777654311000
Q ss_pred CccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCc
Q 019839 196 SASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSK 246 (335)
Q Consensus 196 ~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~ 246 (335)
.....++||+|+. |. +.+....++..+.+++++||-
T Consensus 138 ------------~~~~~~~fD~Vfi-Da--~k~~y~~~~~~~~~ll~~GG~ 173 (234)
T PLN02781 138 ------------NNDPKPEFDFAFV-DA--DKPNYVHFHEQLLKLVKVGGI 173 (234)
T ss_pred ------------hCCCCCCCCEEEE-CC--CHHHHHHHHHHHHHhcCCCeE
Confidence 0001358999987 21 124556788888999999873
No 119
>PTZ00146 fibrillarin; Provisional
Probab=98.65 E-value=3.9e-06 Score=78.73 Aligned_cols=125 Identities=15% Similarity=0.108 Sum_probs=78.2
Q ss_pred ccceeehhH-HHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhC---CEEEEecCchHHHHHHHHHHHHccCCC
Q 019839 94 VGLQVWKAE-LVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVA---WTVFLTDHGNYILDNCAKNVQLNSGVF 169 (335)
Q Consensus 94 ~G~~vW~aa-~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~---~~V~~TD~~~~~l~~~~~Nv~~N~~~~ 169 (335)
+-.++|+-- --||.-|+.-+..-...+|.+|||||||+|..+..+|... ..|++.|+++.+++.+...+..
T Consensus 105 ~eyR~w~p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~----- 179 (293)
T PTZ00146 105 IEYRVWNPFRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK----- 179 (293)
T ss_pred ceeeeeCCcccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh-----
Confidence 358999861 1333334332211134688899999999999999999873 5899999998777554433321
Q ss_pred CCCCeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcc
Q 019839 170 SHQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKK 247 (335)
Q Consensus 170 ~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~ 247 (335)
..++.....|...... + ......+|+|++.- ..++....++..+.++|++++..
T Consensus 180 --r~NI~~I~~Da~~p~~--------------y------~~~~~~vDvV~~Dv--a~pdq~~il~~na~r~LKpGG~~ 233 (293)
T PTZ00146 180 --RPNIVPIIEDARYPQK--------------Y------RMLVPMVDVIFADV--AQPDQARIVALNAQYFLKNGGHF 233 (293)
T ss_pred --cCCCEEEECCccChhh--------------h------hcccCCCCEEEEeC--CCcchHHHHHHHHHHhccCCCEE
Confidence 1234444444322100 0 00124799998754 34566667778899999998853
No 120
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.65 E-value=1.1e-07 Score=88.59 Aligned_cols=104 Identities=14% Similarity=0.184 Sum_probs=71.1
Q ss_pred CCCeEEEEcCccCH----HHHHHHHh-------CCEEEEecCchHHHHHHHHHHH----HccCC----------C-----
Q 019839 120 NGIISLELGAGTGL----AGILLSRV-------AWTVFLTDHGNYILDNCAKNVQ----LNSGV----------F----- 169 (335)
Q Consensus 120 ~g~~VLELG~GtGL----~gl~la~~-------~~~V~~TD~~~~~l~~~~~Nv~----~N~~~----------~----- 169 (335)
++.+|+++|||||- +++.++.. ..+|++||+++.+|+.+++++- ..... .
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45799999999995 45555543 2589999999999999987641 10000 0
Q ss_pred -CC--CCeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCc--ccHHHHHHHHHHhccCC
Q 019839 170 -SH--QGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSD--DLTDALFHTLKRLMPLG 244 (335)
Q Consensus 170 -~~--~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~--~~~~~L~~tl~~lL~~~ 244 (335)
.. ..++.+...|-.+..+ ..++||+|++..|+++- +....+++.+.++|+||
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~-----------------------~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pG 235 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESP-----------------------PLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPG 235 (264)
T ss_pred EChHHhCcCEEeeccCCCCCC-----------------------ccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCC
Confidence 00 1245555555444311 13589999999998765 45668999999999998
Q ss_pred Cc
Q 019839 245 SK 246 (335)
Q Consensus 245 ~~ 246 (335)
|.
T Consensus 236 G~ 237 (264)
T smart00138 236 GY 237 (264)
T ss_pred eE
Confidence 84
No 121
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.64 E-value=3.1e-07 Score=91.69 Aligned_cols=117 Identities=14% Similarity=0.119 Sum_probs=83.1
Q ss_pred ceeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHHccCCCCCC
Q 019839 96 LQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQ 172 (335)
Q Consensus 96 ~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~ 172 (335)
..+++.+..++-.++. ..+|.+|||+|||+|..++.++.. +.+|++.|.++.+++.+++|+..++.
T Consensus 232 ~~vqd~~s~l~~~~l~------~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~----- 300 (445)
T PRK14904 232 VSVQNPTQALACLLLN------PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI----- 300 (445)
T ss_pred EEEeCHHHHHHHHhcC------CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC-----
Confidence 4777766555555543 357899999999999988888764 36899999999999999999988763
Q ss_pred CeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEE------eccc-------cCc---------ccH
Q 019839 173 GSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLA------ADVI-------YSD---------DLT 230 (335)
Q Consensus 173 ~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIla------sDvi-------Y~~---------~~~ 230 (335)
.++.+...|..... ....||+|+. +-++ |.. ...
T Consensus 301 ~~v~~~~~Da~~~~------------------------~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q 356 (445)
T PRK14904 301 TIIETIEGDARSFS------------------------PEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQ 356 (445)
T ss_pred CeEEEEeCcccccc------------------------cCCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHH
Confidence 45677766654321 1237999984 1111 111 123
Q ss_pred HHHHHHHHHhccCCCcc
Q 019839 231 DALFHTLKRLMPLGSKK 247 (335)
Q Consensus 231 ~~L~~tl~~lL~~~~~~ 247 (335)
..++..+.+++++||..
T Consensus 357 ~~iL~~a~~~lkpgG~l 373 (445)
T PRK14904 357 AELLDHAASLLKPGGVL 373 (445)
T ss_pred HHHHHHHHHhcCCCcEE
Confidence 46899999999998854
No 122
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.60 E-value=3.3e-07 Score=86.08 Aligned_cols=103 Identities=17% Similarity=0.317 Sum_probs=82.4
Q ss_pred CCCCCCCeEEEEcCccCHHHHHHHHhC-CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCC
Q 019839 116 SSDFNGIISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGN 194 (335)
Q Consensus 116 ~~~~~g~~VLELG~GtGL~gl~la~~~-~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~ 194 (335)
..+|+|+.|||+|||.|++++.+|..| ++|++.+.+ +|.+.++.-++.|.. ..++.|....-.+
T Consensus 173 ~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~----~~rItVI~GKiEd---------- 237 (517)
T KOG1500|consen 173 HSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNL----ADRITVIPGKIED---------- 237 (517)
T ss_pred ccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCc----cceEEEccCcccc----------
Confidence 478999999999999999999999996 589999998 788999988888854 5788887766544
Q ss_pred CCccccccccCcchhhccCCccEEEEe---ccccCcccHHHHHHHHHHhccCCCcce
Q 019839 195 SSASQERYSWNSSELKEVQRASVLLAA---DVIYSDDLTDALFHTLKRLMPLGSKKV 248 (335)
Q Consensus 195 ~~~~~~~~~w~~~~~~~~~~fDlIlas---DviY~~~~~~~L~~tl~~lL~~~~~~~ 248 (335)
++..++.|+||+- -.+|+....+..+-. ++.|+|+|+-.
T Consensus 238 --------------ieLPEk~DviISEPMG~mL~NERMLEsYl~A-rk~l~P~GkMf 279 (517)
T KOG1500|consen 238 --------------IELPEKVDVIISEPMGYMLVNERMLESYLHA-RKWLKPNGKMF 279 (517)
T ss_pred --------------ccCchhccEEEeccchhhhhhHHHHHHHHHH-HhhcCCCCccc
Confidence 3345699999974 456677777766554 48999998765
No 123
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.59 E-value=1.6e-07 Score=85.42 Aligned_cols=112 Identities=15% Similarity=0.138 Sum_probs=76.3
Q ss_pred eeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhC-CEEEEecCchHHHHH-HHHHHHHccCCCCCCCe
Q 019839 97 QVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDN-CAKNVQLNSGVFSHQGS 174 (335)
Q Consensus 97 ~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~-~~V~~TD~~~~~l~~-~~~Nv~~N~~~~~~~~~ 174 (335)
.+++++.-|...+... ...++|++|||+|||||..+..+++.| ++|++.|.++.++.. ++.|...-. ...
T Consensus 55 ~vsr~~~kL~~~l~~~---~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~-----~~~ 126 (228)
T TIGR00478 55 FVSRGGEKLKEALEEF---NIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKV-----LER 126 (228)
T ss_pred hhhhhHHHHHHHHHhc---CCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeE-----eec
Confidence 6789999999998775 245799999999999999999999995 689999999866643 443321100 011
Q ss_pred eEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839 175 VHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV 248 (335)
Q Consensus 175 v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~ 248 (335)
..++.++|.+.++ ....+|++++|-.. ++..+..+|++ +..+
T Consensus 127 ~ni~~~~~~~~~~-----------------------d~~~~DvsfiS~~~--------~l~~i~~~l~~-~~~~ 168 (228)
T TIGR00478 127 TNIRYVTPADIFP-----------------------DFATFDVSFISLIS--------ILPELDLLLNP-NDLT 168 (228)
T ss_pred CCcccCCHhHcCC-----------------------CceeeeEEEeehHh--------HHHHHHHHhCc-CeEE
Confidence 2233455555421 12367887776433 47788888887 5443
No 124
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.59 E-value=4.6e-07 Score=90.45 Aligned_cols=102 Identities=11% Similarity=0.062 Sum_probs=74.4
Q ss_pred CCCCeEEEEcCccCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCC
Q 019839 119 FNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS 195 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~ 195 (335)
.+|.+|||+|||+|..++.+++. ..+|++.|+++.+++.+++|++.++. .++.+...|+.+....
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~-----~~v~~~~~D~~~~~~~------- 316 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGL-----TNIETKALDARKVHEK------- 316 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----CeEEEEeCCcccccch-------
Confidence 46789999999999999998876 36999999999999999999998873 3577777776543110
Q ss_pred CccccccccCcchhhccCCccEEEEeccccC-------c---------------ccHHHHHHHHHHhccCCCcc
Q 019839 196 SASQERYSWNSSELKEVQRASVLLAADVIYS-------D---------------DLTDALFHTLKRLMPLGSKK 247 (335)
Q Consensus 196 ~~~~~~~~w~~~~~~~~~~fDlIlasDviY~-------~---------------~~~~~L~~tl~~lL~~~~~~ 247 (335)
..+.||+|++---.+. + .....+++...++|++||..
T Consensus 317 ---------------~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~l 375 (444)
T PRK14902 317 ---------------FAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGIL 375 (444)
T ss_pred ---------------hcccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEE
Confidence 1147999985211110 1 01245788899999998753
No 125
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.56 E-value=1.1e-06 Score=87.35 Aligned_cols=102 Identities=21% Similarity=0.119 Sum_probs=72.1
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhC--CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCC
Q 019839 119 FNGIISLELGAGTGLAGILLSRVA--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS 196 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~la~~~--~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~ 196 (335)
.+|.+|||+|||+|..++.++..+ .+|++.|.++.+++.+++|+..++. ++.+...|..+...
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~------~~~~~~~D~~~~~~--------- 307 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL------KATVIVGDARDPAQ--------- 307 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC------CeEEEEcCcccchh---------
Confidence 578999999999999999988874 5999999999999999999998763 24555555433200
Q ss_pred ccccccccCcchhhccCCccEEEEec------cc-------cC--c-------ccHHHHHHHHHHhccCCCcc
Q 019839 197 ASQERYSWNSSELKEVQRASVLLAAD------VI-------YS--D-------DLTDALFHTLKRLMPLGSKK 247 (335)
Q Consensus 197 ~~~~~~~w~~~~~~~~~~fDlIlasD------vi-------Y~--~-------~~~~~L~~tl~~lL~~~~~~ 247 (335)
.....+||.|++-- ++ |. . .....++....++|++||..
T Consensus 308 ------------~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~l 368 (427)
T PRK10901 308 ------------WWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTL 368 (427)
T ss_pred ------------hcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEE
Confidence 00124799998411 11 11 0 12346888999999998854
No 126
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.56 E-value=9.8e-07 Score=76.40 Aligned_cols=61 Identities=16% Similarity=0.048 Sum_probs=50.7
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 118 DFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
...+.+|||+|||+|..+..+++.+.+|++.|+++.+++.+++|+..+ .++.+...|..+.
T Consensus 11 ~~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~~-------~~v~ii~~D~~~~ 71 (169)
T smart00650 11 LRPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAAA-------DNLTVIHGDALKF 71 (169)
T ss_pred CCCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhccC-------CCEEEEECchhcC
Confidence 356789999999999999999998899999999999999999988531 3567777766553
No 127
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.55 E-value=4.4e-07 Score=79.70 Aligned_cols=89 Identities=15% Similarity=0.129 Sum_probs=65.6
Q ss_pred CCCCeEEEEcCccCHHHHHHHH-hCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839 119 FNGIISLELGAGTGLAGILLSR-VAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA 197 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~la~-~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~ 197 (335)
-+|.+|||||||.|.+--.+.. .+.++++.|++++.+..|.+ ..+.|.+.|..+....-
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~------------rGv~Viq~Dld~gL~~f-------- 71 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVA------------RGVSVIQGDLDEGLADF-------- 71 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHH------------cCCCEEECCHHHhHhhC--------
Confidence 4678999999999954444443 57899999999866555542 23567888877753211
Q ss_pred cccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHh
Q 019839 198 SQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRL 240 (335)
Q Consensus 198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~l 240 (335)
...+||+||.++++-....++.+++.+.+.
T Consensus 72 -------------~d~sFD~VIlsqtLQ~~~~P~~vL~EmlRV 101 (193)
T PF07021_consen 72 -------------PDQSFDYVILSQTLQAVRRPDEVLEEMLRV 101 (193)
T ss_pred -------------CCCCccEEehHhHHHhHhHHHHHHHHHHHh
Confidence 346899999999999988888887776555
No 128
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.55 E-value=4.3e-07 Score=78.67 Aligned_cols=120 Identities=15% Similarity=0.141 Sum_probs=81.1
Q ss_pred hHHHHHHHHHhhcCCCCCCCCC-eEEEEcCccCHHHHHHHHhC--CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEE
Q 019839 101 AELVLADFVMHKMCTSSDFNGI-ISLELGAGTGLAGILLSRVA--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHV 177 (335)
Q Consensus 101 aa~~La~~l~~~~~~~~~~~g~-~VLELG~GtGL~gl~la~~~--~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v 177 (335)
+-..+.+|+..+..-...-+.. +|||||||.|.+-.-+++.| ...+++||++.++++++.-+++++. ...|++
T Consensus 47 ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~----~n~I~f 122 (227)
T KOG1271|consen 47 AEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGF----SNEIRF 122 (227)
T ss_pred HHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCC----CcceeE
Confidence 4556778887764211122333 99999999999888888886 3599999999999997766677764 344999
Q ss_pred EeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEe---ccccC-----cccHHHHHHHHHHhccCCCcc
Q 019839 178 RDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAA---DVIYS-----DDLTDALFHTLKRLMPLGSKK 247 (335)
Q Consensus 178 ~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlas---DviY~-----~~~~~~L~~tl~~lL~~~~~~ 247 (335)
..+|..++. ...++||+|+-- |.|-- .......+.++.++|+++|..
T Consensus 123 ~q~DI~~~~-----------------------~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gif 177 (227)
T KOG1271|consen 123 QQLDITDPD-----------------------FLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIF 177 (227)
T ss_pred EEeeccCCc-----------------------ccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEE
Confidence 999887751 023467777631 22211 112255688999999998743
No 129
>PLN02672 methionine S-methyltransferase
Probab=98.55 E-value=4.2e-07 Score=98.22 Aligned_cols=84 Identities=17% Similarity=0.091 Sum_probs=63.8
Q ss_pred hhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhC--CEEEEecCchHHHHHHHHHHHHccCCC--------
Q 019839 100 KAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVA--WTVFLTDHGNYILDNCAKNVQLNSGVF-------- 169 (335)
Q Consensus 100 ~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~--~~V~~TD~~~~~l~~~~~Nv~~N~~~~-------- 169 (335)
+-+..|.+.+.... ...+++++|||||||+|.+++.+++.. ++|+++|+++.+++.+++|+..|....
T Consensus 100 peTE~lve~L~~~~--~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~ 177 (1082)
T PLN02672 100 DWSFTFYEGLNRHP--DSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDG 177 (1082)
T ss_pred hhHHHHHHHHHhcc--cccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCccccccccccc
Confidence 34667777743321 124678899999999999999999873 699999999999999999999985320
Q ss_pred ---CCCCeeEEEeccCCCC
Q 019839 170 ---SHQGSVHVRDLNWMNP 185 (335)
Q Consensus 170 ---~~~~~v~v~~ldW~~~ 185 (335)
....++.+...||.+.
T Consensus 178 ~~~~l~~rV~f~~sDl~~~ 196 (1082)
T PLN02672 178 EGKTLLDRVEFYESDLLGY 196 (1082)
T ss_pred ccccccccEEEEECchhhh
Confidence 0024688888888765
No 130
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.54 E-value=7.1e-07 Score=83.05 Aligned_cols=59 Identities=12% Similarity=0.019 Sum_probs=49.5
Q ss_pred CCCCeEEEEcCccCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccC
Q 019839 119 FNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNW 182 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW 182 (335)
.+|.+|||+|||+|-.++.+|.. ...|++.|.++.+++.+++|++.++. .++.+...|.
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~-----~~v~~~~~D~ 131 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV-----LNVAVTNFDG 131 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC-----CcEEEecCCH
Confidence 47889999999999999888775 35899999999999999999999873 4566666654
No 131
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.53 E-value=1.4e-06 Score=86.46 Aligned_cols=121 Identities=16% Similarity=0.141 Sum_probs=81.1
Q ss_pred hHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEE
Q 019839 101 AELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVR 178 (335)
Q Consensus 101 aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~ 178 (335)
++..++.++ ...+|.+|||+|||+|..++.++.. ..+|++.|.++.+++.++.|++.++. ...+...
T Consensus 226 ~s~~~~~~L-------~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~----~~~v~~~ 294 (426)
T TIGR00563 226 SAQWVATWL-------APQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGL----TIKAETK 294 (426)
T ss_pred HHHHHHHHh-------CCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCC----CeEEEEe
Confidence 455555555 2357889999999999999998876 36999999999999999999998763 1122223
Q ss_pred eccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEE------eccccCccc----------------HHHHHHH
Q 019839 179 DLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLA------ADVIYSDDL----------------TDALFHT 236 (335)
Q Consensus 179 ~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIla------sDviY~~~~----------------~~~L~~t 236 (335)
..|...... | ....+||.|+. +.++...+. ...++..
T Consensus 295 ~~d~~~~~~----------------~-----~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~ 353 (426)
T TIGR00563 295 DGDGRGPSQ----------------W-----AENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDA 353 (426)
T ss_pred ccccccccc----------------c-----ccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHH
Confidence 333221100 0 02347999984 334433222 4678889
Q ss_pred HHHhccCCCcceeeceEEEEEEe
Q 019839 237 LKRLMPLGSKKVLVNMVLYLALE 259 (335)
Q Consensus 237 l~~lL~~~~~~~~~~p~i~ia~~ 259 (335)
..++|++||.. +|..|.
T Consensus 354 a~~~LkpgG~l------vystcs 370 (426)
T TIGR00563 354 IWPLLKTGGTL------VYATCS 370 (426)
T ss_pred HHHhcCCCcEE------EEEeCC
Confidence 99999998754 566553
No 132
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.52 E-value=8.6e-07 Score=88.26 Aligned_cols=106 Identities=15% Similarity=0.092 Sum_probs=75.6
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCC
Q 019839 118 DFNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGN 194 (335)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~ 194 (335)
..+|.+|||+|||+|..++.++.. ..+|++.|.++.+++.+++|++.++. .++.+...|-.+.....
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~-----~~v~~~~~D~~~~~~~~----- 319 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGL-----KSIKILAADSRNLLELK----- 319 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCC-----CeEEEEeCChhhccccc-----
Confidence 357889999999999999988876 25899999999999999999999873 45777666644321000
Q ss_pred CCccccccccCcchhhccCCccEEEEe------ccccCcc----------------cHHHHHHHHHHhccCCCcc
Q 019839 195 SSASQERYSWNSSELKEVQRASVLLAA------DVIYSDD----------------LTDALFHTLKRLMPLGSKK 247 (335)
Q Consensus 195 ~~~~~~~~~w~~~~~~~~~~fDlIlas------DviY~~~----------------~~~~L~~tl~~lL~~~~~~ 247 (335)
....+.||.|+.- .++...+ ....++..+.+++++||..
T Consensus 320 --------------~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~l 380 (434)
T PRK14901 320 --------------PQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTL 380 (434)
T ss_pred --------------ccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEE
Confidence 0012479999951 2333222 1467888999999998754
No 133
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.51 E-value=5.4e-07 Score=79.78 Aligned_cols=90 Identities=13% Similarity=0.116 Sum_probs=63.8
Q ss_pred CCCeEEEEcCccCHHHHHHHHh-CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcc
Q 019839 120 NGIISLELGAGTGLAGILLSRV-AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS 198 (335)
Q Consensus 120 ~g~~VLELG~GtGL~gl~la~~-~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~ 198 (335)
.+.+|||+|||+|..+..++.. +..++++|+++.+++.++.+ ++.+...+..+..+.
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~------------~~~~~~~d~~~~l~~---------- 70 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR------------GVNVIQGDLDEGLEA---------- 70 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc------------CCeEEEEEhhhcccc----------
Confidence 5679999999999988888755 56889999999888776531 123333333221100
Q ss_pred ccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhcc
Q 019839 199 QERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMP 242 (335)
Q Consensus 199 ~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~ 242 (335)
...++||+|+++.++++......+++.+.+.++
T Consensus 71 -----------~~~~sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~ 103 (194)
T TIGR02081 71 -----------FPDKSFDYVILSQTLQATRNPEEILDEMLRVGR 103 (194)
T ss_pred -----------cCCCCcCEEEEhhHhHcCcCHHHHHHHHHHhCC
Confidence 013479999999999998888888777776643
No 134
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.51 E-value=4.6e-07 Score=79.93 Aligned_cols=98 Identities=16% Similarity=0.120 Sum_probs=72.9
Q ss_pred eEEEEcCccCHHHHHHH-HhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeE-EEeccCCCCCCCCccCCCCCcccc
Q 019839 123 ISLELGAGTGLAGILLS-RVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVH-VRDLNWMNPWPPIFSLGNSSASQE 200 (335)
Q Consensus 123 ~VLELG~GtGL~gl~la-~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~-v~~ldW~~~~~~~~~~~~~~~~~~ 200 (335)
.|||+|||||.-==..- +-+.+|++.|-++.|-+.+.+.+..|.. .++. +...+ ++..+.
T Consensus 79 ~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~-----~~~~~fvva~-ge~l~~------------ 140 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKP-----LQVERFVVAD-GENLPQ------------ 140 (252)
T ss_pred ceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccC-----cceEEEEeec-hhcCcc------------
Confidence 58999999995322221 2367999999999999999999998863 3333 22222 222111
Q ss_pred ccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcc
Q 019839 201 RYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKK 247 (335)
Q Consensus 201 ~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~ 247 (335)
-..+++|+|+++=|+-..+.....++.+.++|+|+|..
T Consensus 141 ---------l~d~s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~i 178 (252)
T KOG4300|consen 141 ---------LADGSYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRI 178 (252)
T ss_pred ---------cccCCeeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEE
Confidence 13568999999999999999999999999999998853
No 135
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.50 E-value=1.7e-07 Score=84.41 Aligned_cols=99 Identities=15% Similarity=0.127 Sum_probs=69.1
Q ss_pred CeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCccccc
Q 019839 122 IISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQER 201 (335)
Q Consensus 122 ~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~ 201 (335)
+.++|+|||+|.+.+.+|..-++|++||.++.||+.+++.-...-.. ..-...++. ...
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~~---------t~~~ms~~~------------~v~ 93 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYCH---------TPSTMSSDE------------MVD 93 (261)
T ss_pred ceEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCccccc---------CCccccccc------------ccc
Confidence 38999999999999999999899999999999999776432111100 000000000 000
Q ss_pred cccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839 202 YSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV 248 (335)
Q Consensus 202 ~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~ 248 (335)
.+...++.|+|+++-|+|.-++.. +.+.+.++|++.|+.+
T Consensus 94 ------L~g~e~SVDlI~~Aqa~HWFdle~-fy~~~~rvLRk~Gg~i 133 (261)
T KOG3010|consen 94 ------LLGGEESVDLITAAQAVHWFDLER-FYKEAYRVLRKDGGLI 133 (261)
T ss_pred ------ccCCCcceeeehhhhhHHhhchHH-HHHHHHHHcCCCCCEE
Confidence 011245899999999999887654 7999999999988655
No 136
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.50 E-value=4.9e-07 Score=86.21 Aligned_cols=87 Identities=14% Similarity=0.175 Sum_probs=61.0
Q ss_pred CCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHc-cCCCCCCCeeEEEec-cCCCCCCCCccCCCC
Q 019839 120 NGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLN-SGVFSHQGSVHVRDL-NWMNPWPPIFSLGNS 195 (335)
Q Consensus 120 ~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N-~~~~~~~~~v~v~~l-dW~~~~~~~~~~~~~ 195 (335)
.+.+|||||||+|.+..+++.. +.++++||+++.+++.++.|++.| +. ..++.++.- +-.+....
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l----~~~I~~~~~~~~~~i~~~------- 182 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGL----NGAIRLRLQKDSKAIFKG------- 182 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCC----cCcEEEEEccchhhhhhc-------
Confidence 4679999999999776666544 679999999999999999999999 54 345665431 11110000
Q ss_pred CccccccccCcchhhccCCccEEEEeccccCccc
Q 019839 196 SASQERYSWNSSELKEVQRASVLLAADVIYSDDL 229 (335)
Q Consensus 196 ~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~ 229 (335)
.....+.||+|++.--+|....
T Consensus 183 ------------i~~~~~~fDlivcNPPf~~s~~ 204 (321)
T PRK11727 183 ------------IIHKNERFDATLCNPPFHASAA 204 (321)
T ss_pred ------------ccccCCceEEEEeCCCCcCcch
Confidence 0012358999999998887543
No 137
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.49 E-value=2e-06 Score=78.43 Aligned_cols=104 Identities=13% Similarity=0.069 Sum_probs=83.5
Q ss_pred CCCCCCeEEEEcCccCHHHHHHHHh-C--CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCC
Q 019839 117 SDFNGIISLELGAGTGLAGILLSRV-A--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLG 193 (335)
Q Consensus 117 ~~~~g~~VLELG~GtGL~gl~la~~-~--~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~ 193 (335)
....|.+|||-|.|+|..+.++|+. | .+|+.-|+.++.++.+++|++.-+. ..++....-|-.+..
T Consensus 91 gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l----~d~v~~~~~Dv~~~~------- 159 (256)
T COG2519 91 GISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGL----GDRVTLKLGDVREGI------- 159 (256)
T ss_pred CCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhcc----ccceEEEeccccccc-------
Confidence 6679999999999999999999975 3 5899999999999999999988643 233655554433331
Q ss_pred CCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcceeeceEEEEEE
Q 019839 194 NSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLVNMVLYLAL 258 (335)
Q Consensus 194 ~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~~~~p~i~ia~ 258 (335)
....||.|+. |.+.....+..+..+|++|+..+ +|+.+
T Consensus 160 -----------------~~~~vDav~L-----Dmp~PW~~le~~~~~Lkpgg~~~-----~y~P~ 197 (256)
T COG2519 160 -----------------DEEDVDAVFL-----DLPDPWNVLEHVSDALKPGGVVV-----VYSPT 197 (256)
T ss_pred -----------------cccccCEEEE-----cCCChHHHHHHHHHHhCCCcEEE-----EEcCC
Confidence 1238999998 88999999999999999998777 77654
No 138
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.49 E-value=6.1e-07 Score=83.74 Aligned_cols=89 Identities=17% Similarity=0.159 Sum_probs=61.3
Q ss_pred CCCeEEEEcCccCHHHHHHHHhC-----CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCC
Q 019839 120 NGIISLELGAGTGLAGILLSRVA-----WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGN 194 (335)
Q Consensus 120 ~g~~VLELG~GtGL~gl~la~~~-----~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~ 194 (335)
.+.+|||+|||+|..+..+++.. .+|+++|+++.+++.++++. .++.+...|..+. +
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~----------~~~~~~~~d~~~l-p------- 146 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY----------PQVTFCVASSHRL-P------- 146 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC----------CCCeEEEeecccC-C-------
Confidence 45789999999999888877652 37999999999999887652 1233444333221 0
Q ss_pred CCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839 195 SSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV 248 (335)
Q Consensus 195 ~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~ 248 (335)
-..+.||+|++.. .+ ..++.+.++|+++|..+
T Consensus 147 ---------------~~~~sfD~I~~~~---~~----~~~~e~~rvLkpgG~li 178 (272)
T PRK11088 147 ---------------FADQSLDAIIRIY---AP----CKAEELARVVKPGGIVI 178 (272)
T ss_pred ---------------CcCCceeEEEEec---CC----CCHHHHHhhccCCCEEE
Confidence 0134799999753 22 34578899999988543
No 139
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.48 E-value=1.2e-06 Score=83.03 Aligned_cols=105 Identities=18% Similarity=0.153 Sum_probs=70.3
Q ss_pred CCCeEEEEcCccCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCC
Q 019839 120 NGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS 196 (335)
Q Consensus 120 ~g~~VLELG~GtGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~ 196 (335)
.+.+|||||||+|.....+++. +.+|++.|++++||+.+++++..... ..++.....|..+..+-.
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p----~~~v~~i~gD~~~~~~~~------- 131 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYP----QLEVHGICADFTQPLALP------- 131 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCC----CceEEEEEEcccchhhhh-------
Confidence 5689999999999988877766 57999999999999999998875431 234555555654421100
Q ss_pred ccccccccCcchhhccCCccEEEEeccccCc--ccHHHHHHHHHHhccCCCc
Q 019839 197 ASQERYSWNSSELKEVQRASVLLAADVIYSD--DLTDALFHTLKRLMPLGSK 246 (335)
Q Consensus 197 ~~~~~~~w~~~~~~~~~~fDlIlasDviY~~--~~~~~L~~tl~~lL~~~~~ 246 (335)
.. . ......+++..-.+++. +....+++.+.+.|+|||.
T Consensus 132 ---------~~-~-~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~ 172 (301)
T TIGR03438 132 ---------PE-P-AAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGG 172 (301)
T ss_pred ---------cc-c-ccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCE
Confidence 00 0 00122334444466654 4566799999999999874
No 140
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.48 E-value=1e-06 Score=80.83 Aligned_cols=78 Identities=19% Similarity=0.135 Sum_probs=61.4
Q ss_pred ehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeE
Q 019839 99 WKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVH 176 (335)
Q Consensus 99 W~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~ 176 (335)
|+. ..+.+++.....+...+++..+||+|||+|..++.+++. -.+|+++|.++.++.++.+|++++.. .+.+.
T Consensus 128 pET-EE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l----~g~i~ 202 (328)
T KOG2904|consen 128 PET-EEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKL----SGRIE 202 (328)
T ss_pred ccH-HHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhh----cCceE
Confidence 443 445566665544445678889999999999999998876 36899999999999999999999986 57777
Q ss_pred EEecc
Q 019839 177 VRDLN 181 (335)
Q Consensus 177 v~~ld 181 (335)
+...+
T Consensus 203 v~~~~ 207 (328)
T KOG2904|consen 203 VIHNI 207 (328)
T ss_pred EEecc
Confidence 77543
No 141
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.47 E-value=1.3e-06 Score=78.50 Aligned_cols=110 Identities=17% Similarity=0.217 Sum_probs=74.6
Q ss_pred hHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh-CC--EEEEecCchHHHHHHHHHHHHccCCCCCCCeeEE
Q 019839 101 AELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV-AW--TVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHV 177 (335)
Q Consensus 101 aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~-~~--~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v 177 (335)
+..+.|..+... ..-+|.+|||+|||+|..+-++|++ |. +|+..|.++.+.+.+++|+...+ ..++.+
T Consensus 57 ~P~~~a~~l~~L----~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~-----~~nv~~ 127 (209)
T PF01135_consen 57 APSMVARMLEAL----DLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLG-----IDNVEV 127 (209)
T ss_dssp -HHHHHHHHHHT----TC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHT-----THSEEE
T ss_pred HHHHHHHHHHHH----hcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhc-----cCceeE
Confidence 444455544433 4678999999999999999888887 43 79999999999999999999877 357787
Q ss_pred EeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839 178 RDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV 248 (335)
Q Consensus 178 ~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~ 248 (335)
...|-...+ ....+||.|+..-.+. ... ..+.+.|++||..+
T Consensus 128 ~~gdg~~g~-----------------------~~~apfD~I~v~~a~~--~ip----~~l~~qL~~gGrLV 169 (209)
T PF01135_consen 128 VVGDGSEGW-----------------------PEEAPFDRIIVTAAVP--EIP----EALLEQLKPGGRLV 169 (209)
T ss_dssp EES-GGGTT-----------------------GGG-SEEEEEESSBBS--S------HHHHHTEEEEEEEE
T ss_pred EEcchhhcc-----------------------ccCCCcCEEEEeeccc--hHH----HHHHHhcCCCcEEE
Confidence 777633322 1345899999975553 222 33556688888654
No 142
>PRK04457 spermidine synthase; Provisional
Probab=98.45 E-value=7.4e-07 Score=82.86 Aligned_cols=99 Identities=11% Similarity=0.139 Sum_probs=73.3
Q ss_pred CCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839 120 NGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA 197 (335)
Q Consensus 120 ~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~ 197 (335)
++++|||||||+|..+..+++. +.+|++.|+++++++.+++++..+.. ..++++...|..+...
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~----~~rv~v~~~Da~~~l~---------- 131 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPEN----GERFEVIEADGAEYIA---------- 131 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCC----CCceEEEECCHHHHHH----------
Confidence 5679999999999999888776 46899999999999999999865432 3567777666433211
Q ss_pred cccccccCcchhhccCCccEEEEeccccCcc------cHHHHHHHHHHhccCCCc
Q 019839 198 SQERYSWNSSELKEVQRASVLLAADVIYSDD------LTDALFHTLKRLMPLGSK 246 (335)
Q Consensus 198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~~~------~~~~L~~tl~~lL~~~~~ 246 (335)
...++||+|+. |. |+.. .+..+++.+.++|+++|.
T Consensus 132 ------------~~~~~yD~I~~-D~-~~~~~~~~~l~t~efl~~~~~~L~pgGv 172 (262)
T PRK04457 132 ------------VHRHSTDVILV-DG-FDGEGIIDALCTQPFFDDCRNALSSDGI 172 (262)
T ss_pred ------------hCCCCCCEEEE-eC-CCCCCCccccCcHHHHHHHHHhcCCCcE
Confidence 01247999986 43 3322 247899999999999884
No 143
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.45 E-value=2.7e-06 Score=76.51 Aligned_cols=100 Identities=13% Similarity=0.058 Sum_probs=66.4
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHhC---CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCC
Q 019839 118 DFNGIISLELGAGTGLAGILLSRVA---WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGN 194 (335)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~la~~~---~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~ 194 (335)
..+|.+|||||||+|..+..+++.. .+|++.|+++ + +. ..++.+...|+.+.....
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~-----~~~v~~i~~D~~~~~~~~----- 107 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DP-----IVGVDFLQGDFRDELVLK----- 107 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cC-----CCCcEEEecCCCChHHHH-----
Confidence 3578899999999999998888773 5899999986 1 11 234677777876641000
Q ss_pred CCccccccccCcchhhccCCccEEEEeccccCcc-----------cHHHHHHHHHHhccCCCcce
Q 019839 195 SSASQERYSWNSSELKEVQRASVLLAADVIYSDD-----------LTDALFHTLKRLMPLGSKKV 248 (335)
Q Consensus 195 ~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~-----------~~~~L~~tl~~lL~~~~~~~ 248 (335)
.. ......++||+|++.-+.+... ....+++.+.++|++||..+
T Consensus 108 ------~i----~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~v 162 (209)
T PRK11188 108 ------AL----LERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFV 162 (209)
T ss_pred ------HH----HHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 00 0001235899999965444321 12568899999999998543
No 144
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.45 E-value=2.8e-06 Score=82.71 Aligned_cols=102 Identities=10% Similarity=0.093 Sum_probs=76.1
Q ss_pred CCCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCC
Q 019839 119 FNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS 196 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~ 196 (335)
..+..+||||||+|...+.+|+. ...+++.|+++.++..+.+++..++ ..++.+...|.......
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~g-----L~NV~~i~~DA~~ll~~-------- 187 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLN-----LKNLLIINYDARLLLEL-------- 187 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcC-----CCcEEEEECCHHHhhhh--------
Confidence 45679999999999999999988 4789999999999999999998876 35688777775432110
Q ss_pred ccccccccCcchhhccCCccEEEEeccccCcc------cHHHHHHHHHHhccCCCc
Q 019839 197 ASQERYSWNSSELKEVQRASVLLAADVIYSDD------LTDALFHTLKRLMPLGSK 246 (335)
Q Consensus 197 ~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~------~~~~L~~tl~~lL~~~~~ 246 (335)
-..+.+|.|+..-...++. ..+.+++.+.++|++||.
T Consensus 188 -------------~~~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~ 230 (390)
T PRK14121 188 -------------LPSNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGT 230 (390)
T ss_pred -------------CCCCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcE
Confidence 0234789998642221111 237899999999999884
No 145
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.45 E-value=1.2e-06 Score=85.80 Aligned_cols=98 Identities=18% Similarity=0.168 Sum_probs=70.4
Q ss_pred CCeEEEEcCccCHHHHHHHHhC--CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcc
Q 019839 121 GIISLELGAGTGLAGILLSRVA--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS 198 (335)
Q Consensus 121 g~~VLELG~GtGL~gl~la~~~--~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~ 198 (335)
+.+|||++||+|..|+.+|+.. .+|++.|+++.+++.+++|++.|+. .++.+...|.....
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~-----~~~~v~~~Da~~~l------------ 120 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGL-----ENEKVFNKDANALL------------ 120 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-----CceEEEhhhHHHHH------------
Confidence 4689999999999999998863 4899999999999999999999984 33444444432210
Q ss_pred ccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcceeeceEEEEE
Q 019839 199 QERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLVNMVLYLA 257 (335)
Q Consensus 199 ~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~~~~p~i~ia 257 (335)
....+||+|+. |. | .....++...-+.+++++ + +|++
T Consensus 121 -----------~~~~~fD~V~l-DP-~--Gs~~~~l~~al~~~~~~g--i-----lyvS 157 (382)
T PRK04338 121 -----------HEERKFDVVDI-DP-F--GSPAPFLDSAIRSVKRGG--L-----LCVT 157 (382)
T ss_pred -----------hhcCCCCEEEE-CC-C--CCcHHHHHHHHHHhcCCC--E-----EEEE
Confidence 00246999998 55 2 455667777444456654 5 7777
No 146
>PHA03412 putative methyltransferase; Provisional
Probab=98.44 E-value=1.6e-06 Score=78.80 Aligned_cols=92 Identities=7% Similarity=0.011 Sum_probs=66.0
Q ss_pred CCCeEEEEcCccCHHHHHHHHh-----CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCC
Q 019839 120 NGIISLELGAGTGLAGILLSRV-----AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGN 194 (335)
Q Consensus 120 ~g~~VLELG~GtGL~gl~la~~-----~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~ 194 (335)
.+.+|||+|||+|.+++.+++. ..+|++.|+++.+++.+++|+. ++.+...|.....
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~----------~~~~~~~D~~~~~-------- 110 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP----------EATWINADALTTE-------- 110 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc----------CCEEEEcchhccc--------
Confidence 4779999999999999998874 3589999999999999998853 1334444433210
Q ss_pred CCccccccccCcchhhccCCccEEEEeccccCc------------ccHHHHHHHHHHhccCCC
Q 019839 195 SSASQERYSWNSSELKEVQRASVLLAADVIYSD------------DLTDALFHTLKRLMPLGS 245 (335)
Q Consensus 195 ~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~------------~~~~~L~~tl~~lL~~~~ 245 (335)
...+||+||+.--++.. .....|+....+|+++|.
T Consensus 111 ----------------~~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~ 157 (241)
T PHA03412 111 ----------------FDTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGT 157 (241)
T ss_pred ----------------ccCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCE
Confidence 12479999997777632 225567788888777654
No 147
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.41 E-value=3.9e-06 Score=83.44 Aligned_cols=108 Identities=11% Similarity=0.072 Sum_probs=77.7
Q ss_pred CCCCeEEEEcCccCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCC
Q 019839 119 FNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS 195 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~ 195 (335)
.+|.+|||+|||+|--++.++.. +.+|++.|+++.+++.++.|++..+. .++.+...|......
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~-----~~v~~~~~Da~~l~~-------- 302 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL-----SSIEIKIADAERLTE-------- 302 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CeEEEEECchhhhhh--------
Confidence 57889999999999988888876 46999999999999999999988763 457777776554210
Q ss_pred CccccccccCcchhhccCCccEEEEe-cc-----ccCc----------------ccHHHHHHHHHHhccCCCcceeeceE
Q 019839 196 SASQERYSWNSSELKEVQRASVLLAA-DV-----IYSD----------------DLTDALFHTLKRLMPLGSKKVLVNMV 253 (335)
Q Consensus 196 ~~~~~~~~w~~~~~~~~~~fDlIlas-Dv-----iY~~----------------~~~~~L~~tl~~lL~~~~~~~~~~p~ 253 (335)
...++||.|++- -| +-.. .....++....+++++||. +
T Consensus 303 --------------~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~-L----- 362 (431)
T PRK14903 303 --------------YVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGI-L----- 362 (431)
T ss_pred --------------hhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCE-E-----
Confidence 012479999861 11 1111 1235668888899999875 4
Q ss_pred EEEEEe
Q 019839 254 LYLALE 259 (335)
Q Consensus 254 i~ia~~ 259 (335)
+|..|.
T Consensus 363 vYsTCs 368 (431)
T PRK14903 363 LYSTCT 368 (431)
T ss_pred EEEECC
Confidence 676664
No 148
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.41 E-value=2.3e-06 Score=85.31 Aligned_cols=111 Identities=14% Similarity=0.210 Sum_probs=79.6
Q ss_pred CCCeEEEEcCccCHHHHHHHHhC------CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCC
Q 019839 120 NGIISLELGAGTGLAGILLSRVA------WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLG 193 (335)
Q Consensus 120 ~g~~VLELG~GtGL~gl~la~~~------~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~ 193 (335)
+++.||++|||+|.++..+++.| .+|++.+-++.+...++..+..|+. ..+|++...|-.+-
T Consensus 186 ~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w----~~~V~vi~~d~r~v-------- 253 (448)
T PF05185_consen 186 KDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGW----GDKVTVIHGDMREV-------- 253 (448)
T ss_dssp TT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTT----TTTEEEEES-TTTS--------
T ss_pred cceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCC----CCeEEEEeCcccCC--------
Confidence 57899999999999998888775 5999999999888888877778864 46788888775553
Q ss_pred CCCccccccccCcchhhccCCccEEEE--eccccCcccHHHHHHHHHHhccCCCcceeeceEEEEEE
Q 019839 194 NSSASQERYSWNSSELKEVQRASVLLA--ADVIYSDDLTDALFHTLKRLMPLGSKKVLVNMVLYLAL 258 (335)
Q Consensus 194 ~~~~~~~~~~w~~~~~~~~~~fDlIla--sDviY~~~~~~~L~~tl~~lL~~~~~~~~~~p~i~ia~ 258 (335)
....++|+||+ -..+-+.+.....+....++|+++|..+...-+.|++-
T Consensus 254 ----------------~lpekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~IP~~~t~ylaP 304 (448)
T PF05185_consen 254 ----------------ELPEKVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMIPSSYTSYLAP 304 (448)
T ss_dssp ----------------CHSS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEESSEEEEEEEE
T ss_pred ----------------CCCCceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEeCcchhhEEEE
Confidence 23448999996 22333445666678889999999876554444566654
No 149
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.38 E-value=8.5e-06 Score=79.54 Aligned_cols=105 Identities=15% Similarity=0.057 Sum_probs=77.7
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCC-EEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839 119 FNGIISLELGAGTGLAGILLSRVAW-TVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA 197 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~la~~~~-~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~ 197 (335)
.+|++||+|=|=||..|+.+|+.|+ +||..|.+..+|+.+++|+++|+... .++.+...|-.
T Consensus 216 ~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~---~~~~~i~~Dvf-------------- 278 (393)
T COG1092 216 AAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDG---DRHRFIVGDVF-------------- 278 (393)
T ss_pred ccCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCc---cceeeehhhHH--------------
Confidence 5699999999999999999999987 99999999999999999999999642 33444433321
Q ss_pred cccccccCcchhhccCCccEEEEeccccC---------cccHHHHHHHHHHhccCCC
Q 019839 198 SQERYSWNSSELKEVQRASVLLAADVIYS---------DDLTDALFHTLKRLMPLGS 245 (335)
Q Consensus 198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~---------~~~~~~L~~tl~~lL~~~~ 245 (335)
.|=........+||+||.=..-|- ...+..|+..+.++|+|+|
T Consensus 279 -----~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG 330 (393)
T COG1092 279 -----KWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGG 330 (393)
T ss_pred -----HHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCC
Confidence 121111223459999998322222 1246778889999999988
No 150
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.38 E-value=4e-06 Score=72.63 Aligned_cols=126 Identities=20% Similarity=0.293 Sum_probs=82.1
Q ss_pred hHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEE
Q 019839 101 AELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHV 177 (335)
Q Consensus 101 aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v 177 (335)
.+++|.+-|......-.....+-+||||||+|.++-.+++. ...+.+||++|.+++...+-+..|+. ++.+
T Consensus 24 DTFlLlDaLekd~~eL~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~------~~~~ 97 (209)
T KOG3191|consen 24 DTFLLLDALEKDAAELKGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV------HIDV 97 (209)
T ss_pred hhhHHHHHHHHHHHHHhhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC------ccce
Confidence 45666666654321001112567999999999999998887 35799999999999999999999974 3445
Q ss_pred EeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEecc--------c--------cC-----cccHHHHHHH
Q 019839 178 RDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADV--------I--------YS-----DDLTDALFHT 236 (335)
Q Consensus 178 ~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDv--------i--------Y~-----~~~~~~L~~t 236 (335)
..-|...... .++.|+++-.-- + |- .+.++.|+..
T Consensus 98 V~tdl~~~l~------------------------~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~ 153 (209)
T KOG3191|consen 98 VRTDLLSGLR------------------------NESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQ 153 (209)
T ss_pred eehhHHhhhc------------------------cCCccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhh
Confidence 5555443311 134555543211 1 10 2347888888
Q ss_pred HHHhccCCCcceeeceEEEEEEeeecc
Q 019839 237 LKRLMPLGSKKVLVNMVLYLALEKRYN 263 (335)
Q Consensus 237 l~~lL~~~~~~~~~~p~i~ia~~~R~~ 263 (335)
+..+|++.| + +|+..-+|+.
T Consensus 154 v~~iLSp~G--v-----~Ylv~~~~N~ 173 (209)
T KOG3191|consen 154 VPDILSPRG--V-----FYLVALRANK 173 (209)
T ss_pred hhhhcCcCc--e-----EEeeehhhcC
Confidence 999998866 5 7776655544
No 151
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.38 E-value=2.4e-06 Score=79.26 Aligned_cols=71 Identities=18% Similarity=0.223 Sum_probs=56.3
Q ss_pred HHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCC
Q 019839 104 VLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWM 183 (335)
Q Consensus 104 ~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~ 183 (335)
-+++.+.+.. ...++.+|||+|||+|..++.+++.+.+|++.|+++.+++.++.|+.. ..++.+...|..
T Consensus 16 ~~~~~iv~~~---~~~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~-------~~~v~ii~~D~~ 85 (258)
T PRK14896 16 RVVDRIVEYA---EDTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIA-------AGNVEIIEGDAL 85 (258)
T ss_pred HHHHHHHHhc---CCCCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhcc-------CCCEEEEEeccc
Confidence 3455555543 445789999999999999999999999999999999999999988753 145777777765
Q ss_pred C
Q 019839 184 N 184 (335)
Q Consensus 184 ~ 184 (335)
+
T Consensus 86 ~ 86 (258)
T PRK14896 86 K 86 (258)
T ss_pred c
Confidence 4
No 152
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.37 E-value=5.3e-06 Score=76.03 Aligned_cols=93 Identities=18% Similarity=0.228 Sum_probs=74.4
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeE-EEeccCCCCCCCCccCCCCC
Q 019839 118 DFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVH-VRDLNWMNPWPPIFSLGNSS 196 (335)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~-v~~ldW~~~~~~~~~~~~~~ 196 (335)
..+..++||||||.|-+...++..-.+|++|+.++.|...+++ .... +-..+|.+.
T Consensus 92 ~~~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~------------kg~~vl~~~~w~~~----------- 148 (265)
T PF05219_consen 92 DWKDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSK------------KGFTVLDIDDWQQT----------- 148 (265)
T ss_pred cccCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHh------------CCCeEEehhhhhcc-----------
Confidence 3567899999999999999999998999999999877665543 1122 233446543
Q ss_pred ccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839 197 ASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV 248 (335)
Q Consensus 197 ~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~ 248 (335)
..+||+|.|-.++=.-..+-.|++.|++.|+|+|..+
T Consensus 149 ---------------~~~fDvIscLNvLDRc~~P~~LL~~i~~~l~p~G~li 185 (265)
T PF05219_consen 149 ---------------DFKFDVISCLNVLDRCDRPLTLLRDIRRALKPNGRLI 185 (265)
T ss_pred ---------------CCceEEEeehhhhhccCCHHHHHHHHHHHhCCCCEEE
Confidence 2489999999999888999999999999999988655
No 153
>PLN02476 O-methyltransferase
Probab=98.36 E-value=5.5e-06 Score=77.42 Aligned_cols=104 Identities=13% Similarity=0.163 Sum_probs=76.3
Q ss_pred CCCCeEEEEcCccCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCC
Q 019839 119 FNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS 195 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~ 195 (335)
.+.++|||+|+|+|..++.+|+. +.+|+..|.+++.++.+++|++.++. ..++.+...+..+..+..
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl----~~~I~li~GdA~e~L~~l------ 186 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGV----SHKVNVKHGLAAESLKSM------ 186 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEEcCHHHHHHHH------
Confidence 57899999999999999999975 45799999999999999999999875 346777766544321100
Q ss_pred CccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCc
Q 019839 196 SASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSK 246 (335)
Q Consensus 196 ~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~ 246 (335)
. .....++||+|+.- . +......+++.+.++|++||-
T Consensus 187 -------~----~~~~~~~FD~VFID-a--~K~~Y~~y~e~~l~lL~~GGv 223 (278)
T PLN02476 187 -------I----QNGEGSSYDFAFVD-A--DKRMYQDYFELLLQLVRVGGV 223 (278)
T ss_pred -------H----hcccCCCCCEEEEC-C--CHHHHHHHHHHHHHhcCCCcE
Confidence 0 00012579998861 1 235677888899999999873
No 154
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.35 E-value=4.9e-07 Score=79.61 Aligned_cols=102 Identities=18% Similarity=0.203 Sum_probs=68.1
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhC-CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839 119 FNGIISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA 197 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~la~~~-~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~ 197 (335)
+.|.+||||=||+|..|+-+...| ++|++.|.++.++..+++|++.-+. ..++.+...|.......
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~----~~~~~v~~~d~~~~l~~--------- 107 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGL----EDKIRVIKGDAFKFLLK--------- 107 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-----GGGEEEEESSHHHHHHH---------
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCC----CcceeeeccCHHHHHHh---------
Confidence 789999999999999999888776 6999999999999999999987553 23466666654332100
Q ss_pred cccccccCcchhhccCCccEEEEeccccCcccH-HHHHHHHH--HhccCC
Q 019839 198 SQERYSWNSSELKEVQRASVLLAADVIYSDDLT-DALFHTLK--RLMPLG 244 (335)
Q Consensus 198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~-~~L~~tl~--~lL~~~ 244 (335)
......+||+|++ |.=|..... ..++..|. .+|+++
T Consensus 108 ----------~~~~~~~fDiIfl-DPPY~~~~~~~~~l~~l~~~~~l~~~ 146 (183)
T PF03602_consen 108 ----------LAKKGEKFDIIFL-DPPYAKGLYYEELLELLAENNLLNED 146 (183)
T ss_dssp ----------HHHCTS-EEEEEE---STTSCHHHHHHHHHHHHTTSEEEE
T ss_pred ----------hcccCCCceEEEE-CCCcccchHHHHHHHHHHHCCCCCCC
Confidence 0112468999976 666666663 66677666 455543
No 155
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.34 E-value=4.2e-06 Score=75.46 Aligned_cols=99 Identities=7% Similarity=0.007 Sum_probs=78.2
Q ss_pred CCCCeEEEEcCccCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEe-ccCCCCCCCCccCCC
Q 019839 119 FNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRD-LNWMNPWPPIFSLGN 194 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~-ldW~~~~~~~~~~~~ 194 (335)
...++|||+|.++|..+|.+|.. ..+++.+|++++..+.+++|++.-+. ..++.... +|+.+....
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~----~~~i~~~~~gdal~~l~~------ 127 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGV----DDRIELLLGGDALDVLSR------ 127 (219)
T ss_pred cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCC----cceEEEEecCcHHHHHHh------
Confidence 47899999999999999999987 25899999999999999999998775 34566666 566654211
Q ss_pred CCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCC
Q 019839 195 SSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGS 245 (335)
Q Consensus 195 ~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~ 245 (335)
...++||+|+.= .+......++..+.++|++||
T Consensus 128 ---------------~~~~~fDliFID---adK~~yp~~le~~~~lLr~GG 160 (219)
T COG4122 128 ---------------LLDGSFDLVFID---ADKADYPEYLERALPLLRPGG 160 (219)
T ss_pred ---------------ccCCCccEEEEe---CChhhCHHHHHHHHHHhCCCc
Confidence 124689999871 134677889999999999987
No 156
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.34 E-value=1e-06 Score=78.54 Aligned_cols=96 Identities=16% Similarity=0.174 Sum_probs=68.5
Q ss_pred CCCCCeEEEEcCccCHHHHHHHH--hCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCC
Q 019839 118 DFNGIISLELGAGTGLAGILLSR--VAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS 195 (335)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~la~--~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~ 195 (335)
.-+|.+|||+-||.|..+|.+|+ .++.|++.|.+|.+++.+++|+++|+. ..++.+...|..+..+
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv----~~~i~~~~~D~~~~~~-------- 166 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKV----ENRIEVINGDAREFLP-------- 166 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-----TTTEEEEES-GGG-----------
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCC----CCeEEEEcCCHHHhcC--------
Confidence 35788999999999999999999 578999999999999999999999985 4568888887655421
Q ss_pred CccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCC
Q 019839 196 SASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGS 245 (335)
Q Consensus 196 ~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~ 245 (335)
...+|-||+.- +.....++.....+++++|
T Consensus 167 ----------------~~~~drvim~l----p~~~~~fl~~~~~~~~~~g 196 (200)
T PF02475_consen 167 ----------------EGKFDRVIMNL----PESSLEFLDAALSLLKEGG 196 (200)
T ss_dssp ----------------TT-EEEEEE------TSSGGGGHHHHHHHEEEEE
T ss_pred ----------------ccccCEEEECC----hHHHHHHHHHHHHHhcCCc
Confidence 34799988853 4444557777778887654
No 157
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.34 E-value=2.9e-06 Score=80.16 Aligned_cols=74 Identities=19% Similarity=0.142 Sum_probs=58.8
Q ss_pred HHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCC
Q 019839 105 LADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMN 184 (335)
Q Consensus 105 La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~ 184 (335)
+++.+.... ...++.+|||+|||+|..+..++..+.+|++.|+++.+++.+++|+..+.. ..++.+...|+.+
T Consensus 24 i~~~Iv~~~---~~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~----~~~v~ii~~Dal~ 96 (294)
T PTZ00338 24 VLDKIVEKA---AIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPL----ASKLEVIEGDALK 96 (294)
T ss_pred HHHHHHHhc---CCCCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCC----CCcEEEEECCHhh
Confidence 444555542 445788999999999999999998889999999999999999999876542 2568888877765
Q ss_pred C
Q 019839 185 P 185 (335)
Q Consensus 185 ~ 185 (335)
.
T Consensus 97 ~ 97 (294)
T PTZ00338 97 T 97 (294)
T ss_pred h
Confidence 3
No 158
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.31 E-value=2.7e-06 Score=79.50 Aligned_cols=70 Identities=16% Similarity=0.097 Sum_probs=55.7
Q ss_pred HHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCC
Q 019839 105 LADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMN 184 (335)
Q Consensus 105 La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~ 184 (335)
+++.+.+.. ...++.+|||+|||+|..+..+++.+.+|+++|+++.+++.++.|+.. .++.+...|+.+
T Consensus 30 i~~~i~~~l---~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~--------~~v~~i~~D~~~ 98 (272)
T PRK00274 30 ILDKIVDAA---GPQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAE--------DNLTIIEGDALK 98 (272)
T ss_pred HHHHHHHhc---CCCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhcc--------CceEEEEChhhc
Confidence 345555543 345778999999999999999999988999999999999999887632 357788888766
Q ss_pred C
Q 019839 185 P 185 (335)
Q Consensus 185 ~ 185 (335)
.
T Consensus 99 ~ 99 (272)
T PRK00274 99 V 99 (272)
T ss_pred C
Confidence 4
No 159
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.31 E-value=5e-06 Score=74.52 Aligned_cols=103 Identities=13% Similarity=0.095 Sum_probs=76.3
Q ss_pred CCCCeEEEEcCccCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCC
Q 019839 119 FNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS 195 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~ 195 (335)
.+.++|||+|+|+|..++.+|+. +.+|+..|.+++..+.+++|++..+. ..++++...+..+..+..
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~----~~~I~~~~gda~~~l~~l------ 113 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGL----DDRIEVIEGDALEVLPEL------ 113 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTG----GGGEEEEES-HHHHHHHH------
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCC----CCcEEEEEeccHhhHHHH------
Confidence 46789999999999999999986 57999999999999999999998764 357888877654421100
Q ss_pred CccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCC
Q 019839 196 SASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGS 245 (335)
Q Consensus 196 ~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~ 245 (335)
. .....++||+|+.-- +.......++.+.++|++||
T Consensus 114 -------~----~~~~~~~fD~VFiDa---~K~~y~~y~~~~~~ll~~gg 149 (205)
T PF01596_consen 114 -------A----NDGEEGQFDFVFIDA---DKRNYLEYFEKALPLLRPGG 149 (205)
T ss_dssp -------H----HTTTTTSEEEEEEES---TGGGHHHHHHHHHHHEEEEE
T ss_pred -------H----hccCCCceeEEEEcc---cccchhhHHHHHhhhccCCe
Confidence 0 000124899998721 35667778888889999877
No 160
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.31 E-value=2.7e-06 Score=75.71 Aligned_cols=96 Identities=18% Similarity=0.105 Sum_probs=74.0
Q ss_pred CCCCCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCC
Q 019839 117 SDFNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGN 194 (335)
Q Consensus 117 ~~~~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~ 194 (335)
..-.-.+|.|||||+|-..-.+++. ++.|++.|-+++||+.++.. ..++++...|-.+-.
T Consensus 27 p~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~r----------lp~~~f~~aDl~~w~-------- 88 (257)
T COG4106 27 PLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQR----------LPDATFEEADLRTWK-------- 88 (257)
T ss_pred CccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHh----------CCCCceecccHhhcC--------
Confidence 3445679999999999777777766 78999999999999888543 234455444433321
Q ss_pred CCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCc
Q 019839 195 SSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSK 246 (335)
Q Consensus 195 ~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~ 246 (335)
....+|+|+++-++..-+.+..|+.-+-..|.|||-
T Consensus 89 ----------------p~~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~ 124 (257)
T COG4106 89 ----------------PEQPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGV 124 (257)
T ss_pred ----------------CCCccchhhhhhhhhhccccHHHHHHHHHhhCCCce
Confidence 234799999999999999999999999999999873
No 161
>PRK00811 spermidine synthase; Provisional
Probab=98.30 E-value=6.7e-06 Score=77.34 Aligned_cols=102 Identities=15% Similarity=0.174 Sum_probs=71.0
Q ss_pred CCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHcc-CCCCCCCeeEEEeccCCCCCCCCccCCCCC
Q 019839 120 NGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNS-GVFSHQGSVHVRDLNWMNPWPPIFSLGNSS 196 (335)
Q Consensus 120 ~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~-~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~ 196 (335)
+.++||+||||.|.++..+++. ..+|++.|+++.+++.+++++.... .... ..++++...|-.....
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~-d~rv~v~~~Da~~~l~--------- 145 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYD-DPRVELVIGDGIKFVA--------- 145 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhcccccc-CCceEEEECchHHHHh---------
Confidence 5689999999999999888876 3689999999999999999875422 1111 3566666555332110
Q ss_pred ccccccccCcchhhccCCccEEEEeccc--cCcc---cHHHHHHHHHHhccCCC
Q 019839 197 ASQERYSWNSSELKEVQRASVLLAADVI--YSDD---LTDALFHTLKRLMPLGS 245 (335)
Q Consensus 197 ~~~~~~~w~~~~~~~~~~fDlIlasDvi--Y~~~---~~~~L~~tl~~lL~~~~ 245 (335)
...++||+|++ |+. +... ....+++.++++|+++|
T Consensus 146 -------------~~~~~yDvIi~-D~~dp~~~~~~l~t~ef~~~~~~~L~~gG 185 (283)
T PRK00811 146 -------------ETENSFDVIIV-DSTDPVGPAEGLFTKEFYENCKRALKEDG 185 (283)
T ss_pred -------------hCCCcccEEEE-CCCCCCCchhhhhHHHHHHHHHHhcCCCc
Confidence 02358999997 331 1111 24678899999999988
No 162
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.27 E-value=1.1e-05 Score=71.86 Aligned_cols=140 Identities=14% Similarity=0.168 Sum_probs=95.4
Q ss_pred eEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcccc
Q 019839 123 ISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQE 200 (335)
Q Consensus 123 ~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~ 200 (335)
+|||||||||--+...|+. .-+..-||+++..+..++..+...+.... .....+|-....-
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv----~~P~~lDv~~~~w------------- 90 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNV----RPPLALDVSAPPW------------- 90 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCccc----CCCeEeecCCCCC-------------
Confidence 7999999999988888877 45788999999888888888877653211 1122333332210
Q ss_pred ccccCcchhhccCCccEEEEeccccCc--ccHHHHHHHHHHhccCCCcceeeceEEEEEEeeeccccccchhhhhhhhhH
Q 019839 201 RYSWNSSELKEVQRASVLLAADVIYSD--DLTDALFHTLKRLMPLGSKKVLVNMVLYLALEKRYNFSLNDLDVVANGYSH 278 (335)
Q Consensus 201 ~~~w~~~~~~~~~~fDlIlasDviY~~--~~~~~L~~tl~~lL~~~~~~~~~~p~i~ia~~~R~~ft~~~~d~v~~~~~~ 278 (335)
.|..........||.|+++.++|-. +.++.|++...++|+++|..+ +|=.+...-.+| +++=..
T Consensus 91 --~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~-----~YGPF~~~G~~t-------s~SN~~ 156 (204)
T PF06080_consen 91 --PWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLF-----LYGPFNRDGKFT-------SESNAA 156 (204)
T ss_pred --ccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEE-----EeCCcccCCEeC-------CcHHHH
Confidence 0100000124589999999999985 578999999999999998766 666665554443 355567
Q ss_pred HHHHHhhhhcccccc
Q 019839 279 FRSYIMEEGEHRRFE 293 (335)
Q Consensus 279 f~~~l~~~~~~~~~~ 293 (335)
|...|..++..-|++
T Consensus 157 FD~sLr~rdp~~GiR 171 (204)
T PF06080_consen 157 FDASLRSRDPEWGIR 171 (204)
T ss_pred HHHHHhcCCCCcCcc
Confidence 888887776544443
No 163
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.26 E-value=7.1e-06 Score=72.22 Aligned_cols=101 Identities=15% Similarity=0.045 Sum_probs=63.0
Q ss_pred CCCCCCeEEEEcCccCHHHHHHHHhC---CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCC
Q 019839 117 SDFNGIISLELGAGTGLAGILLSRVA---WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLG 193 (335)
Q Consensus 117 ~~~~g~~VLELG~GtGL~gl~la~~~---~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~ 193 (335)
...+|.+|||+|||+|..+..+++.. .+|+++|+++.+ . ..++.+...|+.+.....
T Consensus 29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----------~------~~~i~~~~~d~~~~~~~~---- 88 (188)
T TIGR00438 29 LIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----------P------IENVDFIRGDFTDEEVLN---- 88 (188)
T ss_pred ccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----------c------CCCceEEEeeCCChhHHH----
Confidence 45688999999999999888887763 479999999743 1 123455555654421000
Q ss_pred CCCccccccccCcchhhccCCccEEEEecccc-----Cc------ccHHHHHHHHHHhccCCCcce
Q 019839 194 NSSASQERYSWNSSELKEVQRASVLLAADVIY-----SD------DLTDALFHTLKRLMPLGSKKV 248 (335)
Q Consensus 194 ~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY-----~~------~~~~~L~~tl~~lL~~~~~~~ 248 (335)
.. .......+||+|++.-..+ .. ...+.+++.+.++|+++|..+
T Consensus 89 -------~l----~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv 143 (188)
T TIGR00438 89 -------KI----RERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFV 143 (188)
T ss_pred -------HH----HHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEE
Confidence 00 0001134799999743211 11 123678899999999988543
No 164
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.24 E-value=1.2e-05 Score=73.42 Aligned_cols=93 Identities=16% Similarity=0.269 Sum_probs=73.1
Q ss_pred CCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839 120 NGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA 197 (335)
Q Consensus 120 ~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~ 197 (335)
..++|||||.|.|..++.+++. +.+++..|. |++++.++. ..++.+...|+.+..
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-----------~~rv~~~~gd~f~~~----------- 156 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-----------ADRVEFVPGDFFDPL----------- 156 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-----------TTTEEEEES-TTTCC-----------
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-----------ccccccccccHHhhh-----------
Confidence 4468999999999999999887 578999999 588888877 167999999988542
Q ss_pred cccccccCcchhhccCCccEEEEeccccC--cccHHHHHHHHHHhccCC--Ccceee
Q 019839 198 SQERYSWNSSELKEVQRASVLLAADVIYS--DDLTDALFHTLKRLMPLG--SKKVLV 250 (335)
Q Consensus 198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~--~~~~~~L~~tl~~lL~~~--~~~~~~ 250 (335)
. .+|+|+.+.|+|+ ++....+++.+.+.|+|+ |+.+|.
T Consensus 157 --------------P-~~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~ 198 (241)
T PF00891_consen 157 --------------P-VADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLII 198 (241)
T ss_dssp --------------S-SESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEE
T ss_pred --------------c-cccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEE
Confidence 1 3999999999987 456778999999999988 655433
No 165
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.23 E-value=1.1e-05 Score=75.24 Aligned_cols=103 Identities=15% Similarity=0.128 Sum_probs=68.6
Q ss_pred CCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839 120 NGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA 197 (335)
Q Consensus 120 ~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~ 197 (335)
+.++||+||||+|.++..+++. ..+|+++|+++.+++.+++++........ ..++++...|..+..
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~-~~~v~i~~~D~~~~l----------- 139 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYD-DPRVDLQIDDGFKFL----------- 139 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhccccc-CCceEEEECchHHHH-----------
Confidence 4569999999999888777766 36899999999999999998754321111 244555443321110
Q ss_pred cccccccCcchhhccCCccEEEEecccc---Cccc--HHHHHHHHHHhccCCCc
Q 019839 198 SQERYSWNSSELKEVQRASVLLAADVIY---SDDL--TDALFHTLKRLMPLGSK 246 (335)
Q Consensus 198 ~~~~~~w~~~~~~~~~~fDlIlasDviY---~~~~--~~~L~~tl~~lL~~~~~ 246 (335)
....++||+||+ |... .... ...+++.++++|+++|.
T Consensus 140 -----------~~~~~~yDvIi~-D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~ 181 (270)
T TIGR00417 140 -----------ADTENTFDVIIV-DSTDPVGPAETLFTKEFYELLKKALNEDGI 181 (270)
T ss_pred -----------HhCCCCccEEEE-eCCCCCCcccchhHHHHHHHHHHHhCCCcE
Confidence 001358999997 3321 1111 56788999999999884
No 166
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=98.23 E-value=2.6e-05 Score=71.12 Aligned_cols=121 Identities=13% Similarity=0.058 Sum_probs=85.8
Q ss_pred CccceeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh--C------CEEEEecCchHHHHHHHHHHHH
Q 019839 93 SVGLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV--A------WTVFLTDHGNYILDNCAKNVQL 164 (335)
Q Consensus 93 ~~G~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~--~------~~V~~TD~~~~~l~~~~~Nv~~ 164 (335)
..++++|.. .+..++ ...+|++|||++||||-++.-+.+. . .+|+..|++|+||+..++....
T Consensus 82 lGiHRlWKd--~~v~~L-------~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~ 152 (296)
T KOG1540|consen 82 LGIHRLWKD--MFVSKL-------GPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKK 152 (296)
T ss_pred cchhHHHHH--Hhhhcc-------CCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhh
Confidence 456788842 222222 4568899999999999888777766 2 6899999999999999888765
Q ss_pred ccCCCCCCCeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCC
Q 019839 165 NSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLG 244 (335)
Q Consensus 165 N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~ 244 (335)
-... . ...+.+...|-.+.+ -+...||....+-=|-+-.+.+..++...|.|+||
T Consensus 153 ~~l~-~-~~~~~w~~~dAE~Lp-----------------------Fdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpG 207 (296)
T KOG1540|consen 153 RPLK-A-SSRVEWVEGDAEDLP-----------------------FDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPG 207 (296)
T ss_pred cCCC-c-CCceEEEeCCcccCC-----------------------CCCCcceeEEEecceecCCCHHHHHHHHHHhcCCC
Confidence 3221 1 222333333322210 02348999999988988999999999999999999
Q ss_pred Ccc
Q 019839 245 SKK 247 (335)
Q Consensus 245 ~~~ 247 (335)
|+.
T Consensus 208 Grf 210 (296)
T KOG1540|consen 208 GRF 210 (296)
T ss_pred cEE
Confidence 853
No 167
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.18 E-value=9.9e-06 Score=74.54 Aligned_cols=103 Identities=16% Similarity=0.066 Sum_probs=75.7
Q ss_pred CCCCCCeEEEEcCccCHHHHHHHHh-C--CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCC
Q 019839 117 SDFNGIISLELGAGTGLAGILLSRV-A--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLG 193 (335)
Q Consensus 117 ~~~~g~~VLELG~GtGL~gl~la~~-~--~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~ 193 (335)
...+|.+|||-|.|+|.+++++|+. | .+|+--|++++-.+.+++|++.++. ..++.+..-|..+..-.
T Consensus 37 ~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl----~~~v~~~~~Dv~~~g~~----- 107 (247)
T PF08704_consen 37 DIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGL----DDNVTVHHRDVCEEGFD----- 107 (247)
T ss_dssp T--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTC----CTTEEEEES-GGCG--S-----
T ss_pred CCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCC----CCCceeEecceeccccc-----
Confidence 6789999999999999999999986 3 5999999999999999999999875 35788888776532110
Q ss_pred CCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhc-cCCCcce
Q 019839 194 NSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLM-PLGSKKV 248 (335)
Q Consensus 194 ~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL-~~~~~~~ 248 (335)
......+|.|+. |-+.....+..+.+.| ++||..+
T Consensus 108 ---------------~~~~~~~DavfL-----Dlp~Pw~~i~~~~~~L~~~gG~i~ 143 (247)
T PF08704_consen 108 ---------------EELESDFDAVFL-----DLPDPWEAIPHAKRALKKPGGRIC 143 (247)
T ss_dssp ---------------TT-TTSEEEEEE-----ESSSGGGGHHHHHHHE-EEEEEEE
T ss_pred ---------------ccccCcccEEEE-----eCCCHHHHHHHHHHHHhcCCceEE
Confidence 011247898887 6677777788888899 7777665
No 168
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.18 E-value=6.4e-06 Score=77.31 Aligned_cols=104 Identities=16% Similarity=0.087 Sum_probs=73.6
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCC-EEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839 119 FNGIISLELGAGTGLAGILLSRVAW-TVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA 197 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~la~~~~-~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~ 197 (335)
.+|++||+|=|=||-.|+.+++.|+ +|+..|.+..+++.+++|+.+|+.. ..++.+...|..+...
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~---~~~~~~~~~Dvf~~l~---------- 188 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLD---LDRHRFIQGDVFKFLK---------- 188 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-C---CTCEEEEES-HHHHHH----------
T ss_pred cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC---ccceEEEecCHHHHHH----------
Confidence 5789999999999999999998875 8999999999999999999999853 3466776666443211
Q ss_pred cccccccCcchhhccCCccEEEEeccccCc------ccHHHHHHHHHHhccCCC
Q 019839 198 SQERYSWNSSELKEVQRASVLLAADVIYSD------DLTDALFHTLKRLMPLGS 245 (335)
Q Consensus 198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~~------~~~~~L~~tl~~lL~~~~ 245 (335)
.....++||+||.=-.-|-. ..+..|+..+.++++++|
T Consensus 189 ----------~~~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG 232 (286)
T PF10672_consen 189 ----------RLKKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGG 232 (286)
T ss_dssp ----------HHHHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEE
T ss_pred ----------HHhcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 02234589999983222221 245678888888999877
No 169
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.17 E-value=1e-05 Score=78.82 Aligned_cols=94 Identities=15% Similarity=0.129 Sum_probs=70.0
Q ss_pred CCeEEEEcCccCHHHHHHHHh--C-CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839 121 GIISLELGAGTGLAGILLSRV--A-WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA 197 (335)
Q Consensus 121 g~~VLELG~GtGL~gl~la~~--~-~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~ 197 (335)
+.+|||+.||+|..||.+++. | .+|++.|.++.+++.+++|++.|+. .++.+...|......
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~-----~~~~v~~~Da~~~l~---------- 109 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSV-----ENIEVPNEDAANVLR---------- 109 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCC-----CcEEEEchhHHHHHH----------
Confidence 468999999999999999987 3 6899999999999999999999973 345555554332210
Q ss_pred cccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCC
Q 019839 198 SQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGS 245 (335)
Q Consensus 198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~ 245 (335)
....+||+|.. |. |. ...++++.+-+.++++|
T Consensus 110 ------------~~~~~fDvIdl-DP-fG--s~~~fld~al~~~~~~g 141 (374)
T TIGR00308 110 ------------YRNRKFHVIDI-DP-FG--TPAPFVDSAIQASAERG 141 (374)
T ss_pred ------------HhCCCCCEEEe-CC-CC--CcHHHHHHHHHhcccCC
Confidence 01247999987 77 42 33467777777777665
No 170
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.16 E-value=3.4e-05 Score=70.08 Aligned_cols=122 Identities=7% Similarity=0.012 Sum_probs=83.4
Q ss_pred HHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHH-------ccCCCCCCCe
Q 019839 102 ELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQL-------NSGVFSHQGS 174 (335)
Q Consensus 102 a~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~-------N~~~~~~~~~ 174 (335)
.-.|.+|+... ..-++.+||..|||.|.-.+.+|..|.+|++.|+++.+++.+.+.... +....-....
T Consensus 29 np~L~~~~~~l----~~~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~ 104 (226)
T PRK13256 29 NEFLVKHFSKL----NINDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDD 104 (226)
T ss_pred CHHHHHHHHhc----CCCCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCc
Confidence 44566666443 223678999999999999999999999999999999888877442110 1100001345
Q ss_pred eEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEE--EeccccCcccHHHHHHHHHHhccCCCcc
Q 019839 175 VHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLL--AADVIYSDDLTDALFHTLKRLMPLGSKK 247 (335)
Q Consensus 175 v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIl--asDviY~~~~~~~L~~tl~~lL~~~~~~ 247 (335)
+.+...|+.+..+.. ...++||+|+ ++=|-..++.-...++.+.++|++++..
T Consensus 105 i~~~~gD~f~l~~~~--------------------~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~l 159 (226)
T PRK13256 105 IEIYVADIFNLPKIA--------------------NNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQI 159 (226)
T ss_pred eEEEEccCcCCCccc--------------------cccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEE
Confidence 677777766642110 1235799966 4445556778888999999999998764
No 171
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.14 E-value=2.5e-05 Score=72.16 Aligned_cols=71 Identities=17% Similarity=0.156 Sum_probs=55.2
Q ss_pred HHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCC
Q 019839 105 LADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMN 184 (335)
Q Consensus 105 La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~ 184 (335)
+++.+.+.. ...++.+|||+|||+|..+..+++.+..|++.|.++.+++.++.+... ..++.+...|..+
T Consensus 17 i~~~i~~~~---~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~-------~~~v~v~~~D~~~ 86 (253)
T TIGR00755 17 VIQKIVEAA---NVLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSL-------YERLEVIEGDALK 86 (253)
T ss_pred HHHHHHHhc---CCCCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCc-------CCcEEEEECchhc
Confidence 344455442 345788999999999999999999998999999999999999887643 2457777777655
Q ss_pred C
Q 019839 185 P 185 (335)
Q Consensus 185 ~ 185 (335)
.
T Consensus 87 ~ 87 (253)
T TIGR00755 87 V 87 (253)
T ss_pred C
Confidence 4
No 172
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.14 E-value=4.6e-06 Score=69.75 Aligned_cols=50 Identities=24% Similarity=0.250 Sum_probs=44.9
Q ss_pred CCCCCCeEEEEcCccCHHHHHHHHhC-CEEEEecCchHHHHHHHHHHHHcc
Q 019839 117 SDFNGIISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDNCAKNVQLNS 166 (335)
Q Consensus 117 ~~~~g~~VLELG~GtGL~gl~la~~~-~~V~~TD~~~~~l~~~~~Nv~~N~ 166 (335)
.++.|+.+++||||+|.++++++..+ ..|++.|++|++|+.+.+|++.-.
T Consensus 45 gdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfE 95 (185)
T KOG3420|consen 45 GDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFE 95 (185)
T ss_pred ccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhh
Confidence 67999999999999999998888775 589999999999999999987653
No 173
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.13 E-value=1.8e-05 Score=70.68 Aligned_cols=96 Identities=19% Similarity=0.223 Sum_probs=69.0
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHH-HHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcc
Q 019839 120 NGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAK-NVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS 198 (335)
Q Consensus 120 ~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~-Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~ 198 (335)
+..-|||+|||+||.|-++...|..+++.|+++.||+.+.. -++ + .....|.+...+-
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~e~e--g---------dlil~DMG~Glpf---------- 108 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVERELE--G---------DLILCDMGEGLPF---------- 108 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHhhhh--c---------CeeeeecCCCCCC----------
Confidence 67789999999999999999999999999999999999875 222 1 2233444443221
Q ss_pred ccccccCcchhhccCCccEEEE---------eccccCcc--cHHHHHHHHHHhccCCCcce
Q 019839 199 QERYSWNSSELKEVQRASVLLA---------ADVIYSDD--LTDALFHTLKRLMPLGSKKV 248 (335)
Q Consensus 199 ~~~~~w~~~~~~~~~~fDlIla---------sDviY~~~--~~~~L~~tl~~lL~~~~~~~ 248 (335)
..+.||-+|+ ||--|+.+ -.-.|+.||..+|+++++.+
T Consensus 109 ------------rpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV 157 (270)
T KOG1541|consen 109 ------------RPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAV 157 (270)
T ss_pred ------------CCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeE
Confidence 2346776665 44444443 34567999999999988765
No 174
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.10 E-value=3.6e-05 Score=70.90 Aligned_cols=104 Identities=13% Similarity=0.071 Sum_probs=75.3
Q ss_pred CCCCeEEEEcCccCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCC
Q 019839 119 FNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS 195 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~ 195 (335)
.+-++|||||+++|+.++.+|+. ..+|+..|.+++..+.++.|++..+. ..++.+...+..+..+....
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~----~~~I~~~~G~a~e~L~~l~~---- 149 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGV----AHKIDFREGPALPVLDQMIE---- 149 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC----CCceEEEeccHHHHHHHHHh----
Confidence 56789999999999999999875 46899999999999999999998764 35777777665443111000
Q ss_pred CccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCC
Q 019839 196 SASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGS 245 (335)
Q Consensus 196 ~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~ 245 (335)
.....++||+|+.- .+...+...++.+.++|++||
T Consensus 150 ------------~~~~~~~fD~iFiD---adK~~Y~~y~~~~l~ll~~GG 184 (247)
T PLN02589 150 ------------DGKYHGTFDFIFVD---ADKDNYINYHKRLIDLVKVGG 184 (247)
T ss_pred ------------ccccCCcccEEEec---CCHHHhHHHHHHHHHhcCCCe
Confidence 00012589999871 124556677788889999977
No 175
>PRK01581 speE spermidine synthase; Validated
Probab=98.09 E-value=1.7e-05 Score=76.51 Aligned_cols=102 Identities=20% Similarity=0.184 Sum_probs=68.4
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhC--CEEEEecCchHHHHHHHHHH---HHccCCCCCCCeeEEEeccCCCCCCCCccCC
Q 019839 119 FNGIISLELGAGTGLAGILLSRVA--WTVFLTDHGNYILDNCAKNV---QLNSGVFSHQGSVHVRDLNWMNPWPPIFSLG 193 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~la~~~--~~V~~TD~~~~~l~~~~~Nv---~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~ 193 (335)
...++||+||||+|.+...+.+.. .+|++.|+++++++.++..- ..|..... ..++++...|-.+...
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~-DpRV~vvi~Da~~fL~------ 221 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFF-DNRVNVHVCDAKEFLS------ 221 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCC-CCceEEEECcHHHHHH------
Confidence 356799999999998877777764 69999999999999999631 12221111 3456665544332110
Q ss_pred CCCccccccccCcchhhccCCccEEEEeccccCc-------ccHHHHHHHHHHhccCCC
Q 019839 194 NSSASQERYSWNSSELKEVQRASVLLAADVIYSD-------DLTDALFHTLKRLMPLGS 245 (335)
Q Consensus 194 ~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~-------~~~~~L~~tl~~lL~~~~ 245 (335)
...++||+|+. |+ .++ -....+++.+++.|+++|
T Consensus 222 ----------------~~~~~YDVIIv-Dl-~DP~~~~~~~LyT~EFy~~~~~~LkPgG 262 (374)
T PRK01581 222 ----------------SPSSLYDVIII-DF-PDPATELLSTLYTSELFARIATFLTEDG 262 (374)
T ss_pred ----------------hcCCCccEEEE-cC-CCccccchhhhhHHHHHHHHHHhcCCCc
Confidence 12347999996 43 222 123668899999999988
No 176
>PRK03612 spermidine synthase; Provisional
Probab=98.05 E-value=2.6e-05 Score=79.44 Aligned_cols=103 Identities=20% Similarity=0.172 Sum_probs=70.2
Q ss_pred CCCeEEEEcCccCHHHHHHHHhC--CEEEEecCchHHHHHHHHHHHH---ccCCCCCCCeeEEEeccCCCCCCCCccCCC
Q 019839 120 NGIISLELGAGTGLAGILLSRVA--WTVFLTDHGNYILDNCAKNVQL---NSGVFSHQGSVHVRDLNWMNPWPPIFSLGN 194 (335)
Q Consensus 120 ~g~~VLELG~GtGL~gl~la~~~--~~V~~TD~~~~~l~~~~~Nv~~---N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~ 194 (335)
+.++||+||||+|.....+++.. .+|++.|+++++++.+++|... |..... .+++++...|-.+..
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~-dprv~vi~~Da~~~l-------- 367 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALD-DPRVTVVNDDAFNWL-------- 367 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccC-CCceEEEEChHHHHH--------
Confidence 56899999999999998888774 6999999999999999986432 221111 345666555422210
Q ss_pred CCccccccccCcchhhccCCccEEEEeccccCc------ccHHHHHHHHHHhccCCCc
Q 019839 195 SSASQERYSWNSSELKEVQRASVLLAADVIYSD------DLTDALFHTLKRLMPLGSK 246 (335)
Q Consensus 195 ~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~------~~~~~L~~tl~~lL~~~~~ 246 (335)
....++||+|+.. .-... -....+++.++++|+++|.
T Consensus 368 --------------~~~~~~fDvIi~D-~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~ 410 (521)
T PRK03612 368 --------------RKLAEKFDVIIVD-LPDPSNPALGKLYSVEFYRLLKRRLAPDGL 410 (521)
T ss_pred --------------HhCCCCCCEEEEe-CCCCCCcchhccchHHHHHHHHHhcCCCeE
Confidence 0113589999984 32211 1234688999999999883
No 177
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.03 E-value=1.3e-05 Score=72.52 Aligned_cols=119 Identities=13% Similarity=0.180 Sum_probs=83.2
Q ss_pred HHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHH-HHHHHHcc-CCCC-----CCCe
Q 019839 102 ELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNC-AKNVQLNS-GVFS-----HQGS 174 (335)
Q Consensus 102 a~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~-~~Nv~~N~-~~~~-----~~~~ 174 (335)
.-.|.+|+.+. ..-.+.+||..|||.|.-.+.+|..|.+|++.|+++.+++.+ ++|-.... .... ..++
T Consensus 23 ~p~L~~~~~~l----~~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~ 98 (218)
T PF05724_consen 23 NPALVEYLDSL----ALKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGR 98 (218)
T ss_dssp THHHHHHHHHH----TTSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSS
T ss_pred CHHHHHHHHhc----CCCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCc
Confidence 56788887763 335677999999999999999999999999999999888877 33322111 1110 1345
Q ss_pred eEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEE--eccccCcccHHHHHHHHHHhccCCCc
Q 019839 175 VHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLA--ADVIYSDDLTDALFHTLKRLMPLGSK 246 (335)
Q Consensus 175 v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIla--sDviY~~~~~~~L~~tl~~lL~~~~~ 246 (335)
|++...|+.+..+ ...++||+|.= +-|--.++.-...++.+.++|+++|.
T Consensus 99 i~~~~gDfF~l~~----------------------~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~ 150 (218)
T PF05724_consen 99 ITIYCGDFFELPP----------------------EDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGR 150 (218)
T ss_dssp EEEEES-TTTGGG----------------------SCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEE
T ss_pred eEEEEcccccCCh----------------------hhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCc
Confidence 6777777666421 12358999984 34445578899999999999999886
No 178
>PLN02366 spermidine synthase
Probab=98.02 E-value=9.2e-05 Score=70.45 Aligned_cols=103 Identities=14% Similarity=0.099 Sum_probs=70.6
Q ss_pred CCCeEEEEcCccCHHHHHHHHhC--CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839 120 NGIISLELGAGTGLAGILLSRVA--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA 197 (335)
Q Consensus 120 ~g~~VLELG~GtGL~gl~la~~~--~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~ 197 (335)
+.++||+||||.|.+...+++.. .+|++.|+++.+++.+++.+..-..... ..++++...|-......
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~-dpRv~vi~~Da~~~l~~--------- 160 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFD-DPRVNLHIGDGVEFLKN--------- 160 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccC-CCceEEEEChHHHHHhh---------
Confidence 56899999999999888888873 6899999999999999998753211111 35677666552211000
Q ss_pred cccccccCcchhhccCCccEEEEeccccCc--c---cHHHHHHHHHHhccCCC
Q 019839 198 SQERYSWNSSELKEVQRASVLLAADVIYSD--D---LTDALFHTLKRLMPLGS 245 (335)
Q Consensus 198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~~--~---~~~~L~~tl~~lL~~~~ 245 (335)
...++||+|+. |..-.. . ....+++.++++|+++|
T Consensus 161 ------------~~~~~yDvIi~-D~~dp~~~~~~L~t~ef~~~~~~~L~pgG 200 (308)
T PLN02366 161 ------------APEGTYDAIIV-DSSDPVGPAQELFEKPFFESVARALRPGG 200 (308)
T ss_pred ------------ccCCCCCEEEE-cCCCCCCchhhhhHHHHHHHHHHhcCCCc
Confidence 01247999997 432111 1 24568999999999988
No 179
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=97.91 E-value=2.1e-05 Score=71.15 Aligned_cols=100 Identities=17% Similarity=0.220 Sum_probs=72.7
Q ss_pred eEEEEcCccCHHHHHHHHhC----CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcc
Q 019839 123 ISLELGAGTGLAGILLSRVA----WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS 198 (335)
Q Consensus 123 ~VLELG~GtGL~gl~la~~~----~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~ 198 (335)
+|||+|||.|-+...+.+-. -.|++.|.+|.+++.++.|...+. .++.+-..|...+...
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e------~~~~afv~Dlt~~~~~---------- 137 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE------SRVEAFVWDLTSPSLK---------- 137 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch------hhhcccceeccchhcc----------
Confidence 79999999998888777762 479999999999999999887764 3333333333332100
Q ss_pred ccccccCcchhhccCCccEEEEecccc--CcccHHHHHHHHHHhccCCCcc
Q 019839 199 QERYSWNSSELKEVQRASVLLAADVIY--SDDLTDALFHTLKRLMPLGSKK 247 (335)
Q Consensus 199 ~~~~~w~~~~~~~~~~fDlIlasDviY--~~~~~~~L~~tl~~lL~~~~~~ 247 (335)
.....+.+|+|.+--|+- +++.....++.+.++++|||..
T Consensus 138 ---------~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~l 179 (264)
T KOG2361|consen 138 ---------EPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSL 179 (264)
T ss_pred ---------CCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEE
Confidence 012346899998876663 3677888899999999998843
No 180
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=97.89 E-value=0.00011 Score=64.62 Aligned_cols=60 Identities=18% Similarity=0.215 Sum_probs=49.6
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHhC-CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEecc
Q 019839 118 DFNGIISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLN 181 (335)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~la~~~-~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ld 181 (335)
.+.|.++|||=||+|.+|+-++..| +.|++.|.+..++..+++|++.-+. ..++.+...|
T Consensus 41 ~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~----~~~~~~~~~d 101 (187)
T COG0742 41 EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGL----EGEARVLRND 101 (187)
T ss_pred ccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC----ccceEEEeec
Confidence 4899999999999999999999885 6899999999999999999976543 2445554443
No 181
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.86 E-value=2.6e-05 Score=68.01 Aligned_cols=98 Identities=12% Similarity=0.154 Sum_probs=69.8
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCccc
Q 019839 120 NGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQ 199 (335)
Q Consensus 120 ~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~ 199 (335)
....+-|||+|+|.+|+++|+.+.+|++.+.+|...+.+++|+..|+ ..++.+...|-.+-
T Consensus 32 a~d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g-----~~n~evv~gDA~~y-------------- 92 (252)
T COG4076 32 AEDTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPG-----DVNWEVVVGDARDY-------------- 92 (252)
T ss_pred hhhceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCC-----CcceEEEecccccc--------------
Confidence 34689999999999999999999999999999999999999998877 45677776654332
Q ss_pred cccccCcchhhccCCccEEEEe--ccccCcccHHHHHHHHHHhccCCCcc
Q 019839 200 ERYSWNSSELKEVQRASVLLAA--DVIYSDDLTDALFHTLKRLMPLGSKK 247 (335)
Q Consensus 200 ~~~~w~~~~~~~~~~fDlIlas--DviY~~~~~~~L~~tl~~lL~~~~~~ 247 (335)
.....|+|+|- |..--.+-.-+.++.+-.+|+..++.
T Consensus 93 -----------~fe~ADvvicEmlDTaLi~E~qVpV~n~vleFLr~d~ti 131 (252)
T COG4076 93 -----------DFENADVVICEMLDTALIEEKQVPVINAVLEFLRYDPTI 131 (252)
T ss_pred -----------cccccceeHHHHhhHHhhcccccHHHHHHHHHhhcCCcc
Confidence 11367888772 32222333334455555577766543
No 182
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=97.85 E-value=3.8e-05 Score=69.55 Aligned_cols=146 Identities=14% Similarity=0.190 Sum_probs=86.1
Q ss_pred CCCCCCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCC-------eeEEEeccCCCCC
Q 019839 116 SSDFNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQG-------SVHVRDLNWMNPW 186 (335)
Q Consensus 116 ~~~~~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~-------~v~v~~ldW~~~~ 186 (335)
.+.+.++.+||+||-+|.+++.+|+. ...|++.|+++.++..++.|++.-........ .+....+.=....
T Consensus 54 ~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a 133 (288)
T KOG2899|consen 54 KDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEA 133 (288)
T ss_pred ccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccc
Confidence 36789999999999999999999987 46899999999999999999865332111000 0000000000000
Q ss_pred CCC---ccCCCCCccccccccCcch-h-hccCCccEEEEecccc------CcccHHHHHHHHHHhccCCCcceeeceEEE
Q 019839 187 PPI---FSLGNSSASQERYSWNSSE-L-KEVQRASVLLAADVIY------SDDLTDALFHTLKRLMPLGSKKVLVNMVLY 255 (335)
Q Consensus 187 ~~~---~~~~~~~~~~~~~~w~~~~-~-~~~~~fDlIlasDviY------~~~~~~~L~~tl~~lL~~~~~~~~~~p~i~ 255 (335)
+.. ....|-......+-....+ + .....||+|+|--+-- +++-.-.|++.|.++|.|||. .+++|.-+
T Consensus 134 ~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGi-LvvEPQpW 212 (288)
T KOG2899|consen 134 DRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGI-LVVEPQPW 212 (288)
T ss_pred cccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcE-EEEcCCch
Confidence 000 0000000000111111111 1 1245899999976643 355677899999999999874 45777767
Q ss_pred EEEeeec
Q 019839 256 LALEKRY 262 (335)
Q Consensus 256 ia~~~R~ 262 (335)
=+|++|.
T Consensus 213 ksY~kaa 219 (288)
T KOG2899|consen 213 KSYKKAA 219 (288)
T ss_pred HHHHHHH
Confidence 7776653
No 183
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=97.83 E-value=0.0001 Score=70.64 Aligned_cols=96 Identities=19% Similarity=0.190 Sum_probs=74.7
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCCE-EEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839 119 FNGIISLELGAGTGLAGILLSRVAWT-VFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA 197 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~la~~~~~-V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~ 197 (335)
..|.+|||+=||.|-.+|.+|+.|+. |++.|+||.+++.+++|+++|+. ...+.....|-.+..+
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v----~~~v~~i~gD~rev~~---------- 252 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKV----EGRVEPILGDAREVAP---------- 252 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCc----cceeeEEeccHHHhhh----------
Confidence 46999999999999999999999865 99999999999999999999986 3446666666444311
Q ss_pred cccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCC
Q 019839 198 SQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGS 245 (335)
Q Consensus 198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~ 245 (335)
....+|-|+.. .+.....++.+..++++.++
T Consensus 253 -------------~~~~aDrIim~----~p~~a~~fl~~A~~~~k~~g 283 (341)
T COG2520 253 -------------ELGVADRIIMG----LPKSAHEFLPLALELLKDGG 283 (341)
T ss_pred -------------ccccCCEEEeC----CCCcchhhHHHHHHHhhcCc
Confidence 12579999886 34455566777777777765
No 184
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.79 E-value=0.00012 Score=72.71 Aligned_cols=127 Identities=16% Similarity=0.172 Sum_probs=87.0
Q ss_pred hHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEec
Q 019839 101 AELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDL 180 (335)
Q Consensus 101 aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~l 180 (335)
+|.+|-.++-+.. ..-.++.++|+-||||+.|+++|+..++|++..++++.+.-++.|+..|+. .++++...
T Consensus 367 ~aevLys~i~e~~---~l~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~Ngi-----sNa~Fi~g 438 (534)
T KOG2187|consen 367 AAEVLYSTIGEWA---GLPADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQINGI-----SNATFIVG 438 (534)
T ss_pred HHHHHHHHHHHHh---CCCCCcEEEEEeecCCceehhhhccccceeeeecChhhcchhhhcchhcCc-----cceeeeec
Confidence 4778888888774 455678999999999999999999999999999999999999999999994 55666555
Q ss_pred cCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcceeeceEEEEEEee
Q 019839 181 NWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLVNMVLYLALEK 260 (335)
Q Consensus 181 dW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~~~~p~i~ia~~~ 260 (335)
.-.+..+.... ...+.-++|.-.|-=- ...+..+++.|...-. .+.. +|+++..
T Consensus 439 qaE~~~~sl~~------------------~~~~~~~~v~iiDPpR-~Glh~~~ik~l~~~~~--~~rl-----vyvSCn~ 492 (534)
T KOG2187|consen 439 QAEDLFPSLLT------------------PCCDSETLVAIIDPPR-KGLHMKVIKALRAYKN--PRRL-----VYVSCNP 492 (534)
T ss_pred chhhccchhcc------------------cCCCCCceEEEECCCc-ccccHHHHHHHHhccC--ccce-----EEEEcCH
Confidence 22222111100 0011334333322111 2456667777766654 3556 8999976
Q ss_pred e
Q 019839 261 R 261 (335)
Q Consensus 261 R 261 (335)
+
T Consensus 493 ~ 493 (534)
T KOG2187|consen 493 H 493 (534)
T ss_pred H
Confidence 5
No 185
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.75 E-value=0.00029 Score=66.46 Aligned_cols=88 Identities=19% Similarity=0.362 Sum_probs=49.8
Q ss_pred CCeEEEEcCccC-HHHHHHHHh-CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcc
Q 019839 121 GIISLELGAGTG-LAGILLSRV-AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS 198 (335)
Q Consensus 121 g~~VLELG~GtG-L~gl~la~~-~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~ 198 (335)
..++||+|+|.- +..|..++. +.++++||+++..++.++.|++.|..+ ..+|.++.-.=... .+ .
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L---~~~I~l~~~~~~~~---i~-~------ 169 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNL---ESRIELRKQKNPDN---IF-D------ 169 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T----TTTEEEEE--ST-S---ST-T------
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhcccc---ccceEEEEcCCccc---cc-h------
Confidence 678999999965 667776665 889999999999999999999999333 46787765531111 00 0
Q ss_pred ccccccCcchhhccCCccEEEEeccccCccc
Q 019839 199 QERYSWNSSELKEVQRASVLLAADVIYSDDL 229 (335)
Q Consensus 199 ~~~~~w~~~~~~~~~~fDlIlasDviY~~~~ 229 (335)
......+.||+.+|..-+|....
T Consensus 170 --------~i~~~~e~~dftmCNPPFy~s~~ 192 (299)
T PF05971_consen 170 --------GIIQPNERFDFTMCNPPFYSSQE 192 (299)
T ss_dssp --------TSTT--S-EEEEEE-----SS--
T ss_pred --------hhhcccceeeEEecCCccccChh
Confidence 00123358999999999998643
No 186
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.67 E-value=0.0028 Score=57.80 Aligned_cols=130 Identities=15% Similarity=0.171 Sum_probs=84.1
Q ss_pred ccceeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCC
Q 019839 94 VGLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSH 171 (335)
Q Consensus 94 ~G~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~ 171 (335)
-+..+++.++.=|.|+.++ ..+.|++||=|| =-=|+||++|.. .++|+..|+++.+++.+++.++..+
T Consensus 22 Q~~~T~eT~~~Ra~~~~~~----gdL~gk~il~lG-DDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~g----- 91 (243)
T PF01861_consen 22 QGYATPETTLRRAALMAER----GDLEGKRILFLG-DDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEG----- 91 (243)
T ss_dssp ---B-HHHHHHHHHHHHHT----T-STT-EEEEES--TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT-----
T ss_pred cccccHHHHHHHHHHHHhc----CcccCCEEEEEc-CCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcC-----
Confidence 4667778888888888886 678999999998 334888888876 4799999999999999999998876
Q ss_pred CCeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcceeec
Q 019839 172 QGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLVN 251 (335)
Q Consensus 172 ~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~~~~ 251 (335)
-++++...|..+..|+. ..++||+++. |.-|-.+-...|+.---..|+..+. .
T Consensus 92 -l~i~~~~~DlR~~LP~~---------------------~~~~fD~f~T-DPPyT~~G~~LFlsRgi~~Lk~~g~-~--- 144 (243)
T PF01861_consen 92 -LPIEAVHYDLRDPLPEE---------------------LRGKFDVFFT-DPPYTPEGLKLFLSRGIEALKGEGC-A--- 144 (243)
T ss_dssp ---EEEE---TTS---TT---------------------TSS-BSEEEE----SSHHHHHHHHHHHHHTB-STT--E---
T ss_pred -CceEEEEecccccCCHH---------------------HhcCCCEEEe-CCCCCHHHHHHHHHHHHHHhCCCCc-e---
Confidence 34899999998886643 3469999885 7777777777777777777775442 4
Q ss_pred eEEEEEEeeec
Q 019839 252 MVLYLALEKRY 262 (335)
Q Consensus 252 p~i~ia~~~R~ 262 (335)
.|+++..+.
T Consensus 145 --gy~~~~~~~ 153 (243)
T PF01861_consen 145 --GYFGFTHKE 153 (243)
T ss_dssp --EEEEE-TTT
T ss_pred --EEEEEecCc
Confidence 788876654
No 187
>PLN02823 spermine synthase
Probab=97.65 E-value=0.00029 Score=67.79 Aligned_cols=101 Identities=18% Similarity=0.258 Sum_probs=70.0
Q ss_pred CCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839 120 NGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA 197 (335)
Q Consensus 120 ~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~ 197 (335)
..++||.||+|.|.+...+.+. ..+|++.|+++.+++.++++...+..... ..++++...|-.....
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~-dprv~v~~~Da~~~L~---------- 171 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFC-DKRLELIINDARAELE---------- 171 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhccccccccc-CCceEEEEChhHHHHh----------
Confidence 4579999999999888877775 36899999999999999998876543221 3566666544222100
Q ss_pred cccccccCcchhhccCCccEEEEeccccCcc--------cHHHHHH-HHHHhccCCC
Q 019839 198 SQERYSWNSSELKEVQRASVLLAADVIYSDD--------LTDALFH-TLKRLMPLGS 245 (335)
Q Consensus 198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~~~--------~~~~L~~-tl~~lL~~~~ 245 (335)
...++||+|+. |+ .++. ....+++ .++++|+++|
T Consensus 172 ------------~~~~~yDvIi~-D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~G 214 (336)
T PLN02823 172 ------------KRDEKFDVIIG-DL-ADPVEGGPCYQLYTKSFYERIVKPKLNPGG 214 (336)
T ss_pred ------------hCCCCccEEEe-cC-CCccccCcchhhccHHHHHHHHHHhcCCCc
Confidence 12358999995 43 2221 1445777 8999999988
No 188
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=97.60 E-value=8.4e-05 Score=64.08 Aligned_cols=60 Identities=15% Similarity=0.096 Sum_probs=50.3
Q ss_pred CeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 122 IISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 122 ~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
+.|||+.||.|--.|.+|+.+.+|++.|+++.-++.++.|++.-+. ..++.+...||.+.
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv----~~~I~~i~gD~~~~ 60 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGV----ADNIDFICGDFFEL 60 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-----GGGEEEEES-HHHH
T ss_pred CEEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEeCCHHHH
Confidence 3699999999999999999999999999999999999999998764 46899999999875
No 189
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.57 E-value=0.0004 Score=61.18 Aligned_cols=90 Identities=21% Similarity=0.213 Sum_probs=64.8
Q ss_pred eEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcccc
Q 019839 123 ISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQE 200 (335)
Q Consensus 123 ~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~ 200 (335)
+++|+|+|.|++||.+|.. ..+|++.|-...=+..++.-+..-+ ..++.+...+..+.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~-----L~nv~v~~~R~E~~--------------- 110 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELG-----LSNVEVINGRAEEP--------------- 110 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT------SSEEEEES-HHHT---------------
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhC-----CCCEEEEEeeeccc---------------
Confidence 7999999999999999988 4689999999866666655554433 24577766654441
Q ss_pred ccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCC
Q 019839 201 RYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGS 245 (335)
Q Consensus 201 ~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~ 245 (335)
....+||+|++-= ....+.++.....+++++|
T Consensus 111 ---------~~~~~fd~v~aRA----v~~l~~l~~~~~~~l~~~G 142 (184)
T PF02527_consen 111 ---------EYRESFDVVTARA----VAPLDKLLELARPLLKPGG 142 (184)
T ss_dssp ---------TTTT-EEEEEEES----SSSHHHHHHHHGGGEEEEE
T ss_pred ---------ccCCCccEEEeeh----hcCHHHHHHHHHHhcCCCC
Confidence 1245899999953 3456778889999998877
No 190
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.57 E-value=0.00022 Score=59.40 Aligned_cols=58 Identities=17% Similarity=0.174 Sum_probs=49.0
Q ss_pred eEEEEcCccCHHHHHHHHhCC--EEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 123 ISLELGAGTGLAGILLSRVAW--TVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 123 ~VLELG~GtGL~gl~la~~~~--~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
+|||+|||+|..++.+++.+. +|++.|.++.+.+.+++|++.|.. .++.+....+.+.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~-----~~v~~~~~al~~~ 60 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNL-----PNVVLLNAAVGDR 60 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCC-----CcEEEEEeeeeCC
Confidence 489999999999999998864 799999999999999999999873 4577776666554
No 191
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.49 E-value=0.00058 Score=61.47 Aligned_cols=95 Identities=15% Similarity=0.105 Sum_probs=64.8
Q ss_pred CCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcc
Q 019839 121 GIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS 198 (335)
Q Consensus 121 g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~ 198 (335)
+++++|+|+|.|++||.+|.. ..+|+..|-...=+..++.-...-+ ..++++....-.+...
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~-----L~nv~i~~~RaE~~~~----------- 131 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELG-----LENVEIVHGRAEEFGQ----------- 131 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhC-----CCCeEEehhhHhhccc-----------
Confidence 689999999999999999965 4569999998755555554443322 2345555444333211
Q ss_pred ccccccCcchhhccCC-ccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839 199 QERYSWNSSELKEVQR-ASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV 248 (335)
Q Consensus 199 ~~~~~w~~~~~~~~~~-fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~ 248 (335)
..+ ||+|.+- -......++.....+++.+|..+
T Consensus 132 -------------~~~~~D~vtsR----Ava~L~~l~e~~~pllk~~g~~~ 165 (215)
T COG0357 132 -------------EKKQYDVVTSR----AVASLNVLLELCLPLLKVGGGFL 165 (215)
T ss_pred -------------ccccCcEEEee----hccchHHHHHHHHHhcccCCcch
Confidence 113 9999984 23556778889999999988644
No 192
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.48 E-value=0.00072 Score=62.37 Aligned_cols=86 Identities=21% Similarity=0.241 Sum_probs=66.5
Q ss_pred CccceeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCC
Q 019839 93 SVGLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQ 172 (335)
Q Consensus 93 ~~G~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~ 172 (335)
+.|..+-..+.++...+... ..-.+..|||+|-|||.....+...|++|++.+.++.|+..+++.++--.. .
T Consensus 35 d~GQHilkNp~v~~~I~~ka----~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~----~ 106 (315)
T KOG0820|consen 35 DFGQHILKNPLVIDQIVEKA----DLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPK----S 106 (315)
T ss_pred ccchhhhcCHHHHHHHHhcc----CCCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCc----c
Confidence 34555556666666555443 556778999999999999999999999999999999999999988753221 4
Q ss_pred CeeEEEeccCCCCC
Q 019839 173 GSVHVRDLNWMNPW 186 (335)
Q Consensus 173 ~~v~v~~ldW~~~~ 186 (335)
+..++...|.....
T Consensus 107 ~kLqV~~gD~lK~d 120 (315)
T KOG0820|consen 107 GKLQVLHGDFLKTD 120 (315)
T ss_pred ceeeEEecccccCC
Confidence 67888888877653
No 193
>PRK00536 speE spermidine synthase; Provisional
Probab=97.39 E-value=0.0019 Score=60.08 Aligned_cols=94 Identities=11% Similarity=-0.047 Sum_probs=68.3
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCccc
Q 019839 120 NGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQ 199 (335)
Q Consensus 120 ~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~ 199 (335)
..++||=+|.|-|.+.--+.|...+|++.|+++++++.+++-+-....... .+++.+.. |...
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~-DpRv~l~~--~~~~-------------- 134 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKN-NKNFTHAK--QLLD-------------- 134 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhc-CCCEEEee--hhhh--------------
Confidence 458999999999999999999877999999999999999974322111111 35555543 2211
Q ss_pred cccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCC
Q 019839 200 ERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGS 245 (335)
Q Consensus 200 ~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~ 245 (335)
...++||+|| .|..|. ..+.+.+++.|+++|
T Consensus 135 ----------~~~~~fDVII-vDs~~~----~~fy~~~~~~L~~~G 165 (262)
T PRK00536 135 ----------LDIKKYDLII-CLQEPD----IHKIDGLKRMLKEDG 165 (262)
T ss_pred ----------ccCCcCCEEE-EcCCCC----hHHHHHHHHhcCCCc
Confidence 0124899999 566654 567788999999988
No 194
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=97.25 E-value=0.00085 Score=65.51 Aligned_cols=110 Identities=20% Similarity=0.231 Sum_probs=75.7
Q ss_pred eEEEEcCccCHHHHHHHHhCC-EEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCccccc
Q 019839 123 ISLELGAGTGLAGILLSRVAW-TVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQER 201 (335)
Q Consensus 123 ~VLELG~GtGL~gl~la~~~~-~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~ 201 (335)
-||++|+||||+|+.+++.|+ .|++.+.=.-|.+.+++-+..|+. ..++.+..-.=.+. +
T Consensus 69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~----SdkI~vInkrStev--------------~- 129 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGM----SDKINVINKRSTEV--------------K- 129 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCC----ccceeeecccccee--------------e-
Confidence 699999999999999999975 799999887889999888888875 34555543211110 0
Q ss_pred cccCcchhhccCCccEEEEeccccC---cccHHHHHHHHHHhccCCCcceeeceEEEEEE
Q 019839 202 YSWNSSELKEVQRASVLLAADVIYS---DDLTDALFHTLKRLMPLGSKKVLVNMVLYLAL 258 (335)
Q Consensus 202 ~~w~~~~~~~~~~fDlIlasDviY~---~~~~~~L~~tl~~lL~~~~~~~~~~p~i~ia~ 258 (335)
.....+.|++++.|..-. ......+-....+|+.++++.+....++|+-.
T Consensus 130 -------vg~~~RadI~v~e~fdtEligeGalps~qhAh~~L~~~nc~~VP~ratvY~ql 182 (636)
T KOG1501|consen 130 -------VGGSSRADIAVREDFDTELIGEGALPSLQHAHDMLLVDNCKTVPYRATVYCQL 182 (636)
T ss_pred -------ecCcchhhhhhHhhhhhhhhccccchhHHHHHHHhcccCCeeccccceEEEEE
Confidence 000124677766554322 23566777888899999998876666677654
No 195
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=97.24 E-value=0.0027 Score=61.09 Aligned_cols=128 Identities=9% Similarity=0.092 Sum_probs=73.8
Q ss_pred ehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCH-HHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCC-CC---
Q 019839 99 WKAELVLADFVMHKMCTSSDFNGIISLELGAGTGL-AGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSH-QG--- 173 (335)
Q Consensus 99 W~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL-~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~-~~--- 173 (335)
|=-+.++..|+.... ...++.+|||||||-|- +.=........++++|++...++.++............ ..
T Consensus 44 wvKs~LI~~~~~~~~---~~~~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~ 120 (331)
T PF03291_consen 44 WVKSVLIQKYAKKVK---QNRPGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFD 120 (331)
T ss_dssp HHHHHHHHHHCHCCC---CTTTT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEEC
T ss_pred HHHHHHHHHHHHhhh---ccCCCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhcccccccccccc
Confidence 667888888875332 22378899999999774 22222222479999999999999998877321111000 11
Q ss_pred -eeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCc----ccHHHHHHHHHHhccCCCc
Q 019839 174 -SVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSD----DLTDALFHTLKRLMPLGSK 246 (335)
Q Consensus 174 -~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~----~~~~~L~~tl~~lL~~~~~ 246 (335)
...+...|-.... ....+ .....+||+|=+--++|+- +....+++.+..+|++||.
T Consensus 121 f~a~f~~~D~f~~~-----------l~~~~------~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~ 181 (331)
T PF03291_consen 121 FIAEFIAADCFSES-----------LREKL------PPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGY 181 (331)
T ss_dssp CEEEEEESTTCCSH-----------HHCTS------SSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEE
T ss_pred chhheeccccccch-----------hhhhc------cccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCE
Confidence 1222333222110 00000 0113589999998888773 5677799999999999884
No 196
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.24 E-value=0.0034 Score=58.29 Aligned_cols=74 Identities=16% Similarity=0.170 Sum_probs=58.6
Q ss_pred HHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEecc
Q 019839 102 ELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLN 181 (335)
Q Consensus 102 a~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ld 181 (335)
..-+++.|.+.. ..-++..|||+|+|+|..+-.++..+++|++.+.++.+.+.++..... ..++.+...|
T Consensus 15 ~~~~~~~Iv~~~---~~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~~-------~~~~~vi~~D 84 (262)
T PF00398_consen 15 DPNIADKIVDAL---DLSEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFAS-------NPNVEVINGD 84 (262)
T ss_dssp HHHHHHHHHHHH---TCGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCTT-------CSSEEEEES-
T ss_pred CHHHHHHHHHhc---CCCCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhhh-------cccceeeecc
Confidence 344566666654 334889999999999999999999999999999999999999887652 3678888888
Q ss_pred CCCC
Q 019839 182 WMNP 185 (335)
Q Consensus 182 W~~~ 185 (335)
..+.
T Consensus 85 ~l~~ 88 (262)
T PF00398_consen 85 FLKW 88 (262)
T ss_dssp TTTS
T ss_pred hhcc
Confidence 6654
No 197
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.21 E-value=0.0025 Score=64.06 Aligned_cols=108 Identities=9% Similarity=0.066 Sum_probs=72.9
Q ss_pred CCCCeEEEEcCccCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCC
Q 019839 119 FNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS 195 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~ 195 (335)
-+|.+|||++||.|-=+..+|.. ...|++.|+++.-++.++.|+++-+ ..++.+...|-.....
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G-----~~nv~v~~~D~~~~~~-------- 178 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCG-----VSNVALTHFDGRVFGA-------- 178 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcC-----CCeEEEEeCchhhhhh--------
Confidence 47889999999999777777665 2589999999999999999999866 2455555544221100
Q ss_pred CccccccccCcchhhccCCccEEEE----e---------ccccC---------cccHHHHHHHHHHhccCCCcceeeceE
Q 019839 196 SASQERYSWNSSELKEVQRASVLLA----A---------DVIYS---------DDLTDALFHTLKRLMPLGSKKVLVNMV 253 (335)
Q Consensus 196 ~~~~~~~~w~~~~~~~~~~fDlIla----s---------DviY~---------~~~~~~L~~tl~~lL~~~~~~~~~~p~ 253 (335)
.....||.||. | |+.+. ......++....++|++||. +
T Consensus 179 --------------~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~-L----- 238 (470)
T PRK11933 179 --------------ALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGT-L----- 238 (470)
T ss_pred --------------hchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcE-E-----
Confidence 01236888883 3 12221 12235677888889999874 3
Q ss_pred EEEEEe
Q 019839 254 LYLALE 259 (335)
Q Consensus 254 i~ia~~ 259 (335)
+|..|.
T Consensus 239 VYSTCT 244 (470)
T PRK11933 239 VYSTCT 244 (470)
T ss_pred EEECCC
Confidence 677664
No 198
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.19 E-value=0.0011 Score=59.39 Aligned_cols=108 Identities=15% Similarity=0.065 Sum_probs=59.0
Q ss_pred CCCCCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccC----CCCCCCeeEEEeccCCCCCCCCc
Q 019839 117 SDFNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSG----VFSHQGSVHVRDLNWMNPWPPIF 190 (335)
Q Consensus 117 ~~~~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~----~~~~~~~v~v~~ldW~~~~~~~~ 190 (335)
..-++...+|||||.|-+-+.+|.. ..++++.++.+...+.++.+.+.... ......++.....|+.+...
T Consensus 39 ~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~--- 115 (205)
T PF08123_consen 39 NLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDF--- 115 (205)
T ss_dssp T--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHH---
T ss_pred CCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHh---
Confidence 3456789999999999877777655 35799999998777666554432211 00013556666666554310
Q ss_pred cCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCC
Q 019839 191 SLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGS 245 (335)
Q Consensus 191 ~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~ 245 (335)
. .......|+|++...+|++++...|.+.+ .-|++|.
T Consensus 116 --------------~---~~~~s~AdvVf~Nn~~F~~~l~~~L~~~~-~~lk~G~ 152 (205)
T PF08123_consen 116 --------------V---KDIWSDADVVFVNNTCFDPDLNLALAELL-LELKPGA 152 (205)
T ss_dssp --------------H---HHHGHC-SEEEE--TTT-HHHHHHHHHHH-TTS-TT-
T ss_pred --------------H---hhhhcCCCEEEEeccccCHHHHHHHHHHH-hcCCCCC
Confidence 0 00124689999999999998888875444 4456654
No 199
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.17 E-value=0.0026 Score=58.87 Aligned_cols=70 Identities=16% Similarity=0.061 Sum_probs=55.4
Q ss_pred HHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 106 ADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 106 a~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
.+.|.... ...++.+|||+|+|.|.+...+++.+++|++.++++.+++.++..... ..++.+...|....
T Consensus 19 ~~kIv~~a---~~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~-------~~n~~vi~~DaLk~ 88 (259)
T COG0030 19 IDKIVEAA---NISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAP-------YDNLTVINGDALKF 88 (259)
T ss_pred HHHHHHhc---CCCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhccc-------ccceEEEeCchhcC
Confidence 55555553 444588999999999999999999999999999999999999877651 35677777665554
No 200
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.16 E-value=0.0026 Score=59.55 Aligned_cols=96 Identities=17% Similarity=0.156 Sum_probs=60.3
Q ss_pred CCCCCCeEEEEcCccCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCC
Q 019839 117 SDFNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLG 193 (335)
Q Consensus 117 ~~~~g~~VLELG~GtGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~ 193 (335)
+.|+.++|||+|||+|....++... -.++++.|.++.|++..+.-+. +... . ....|.......
T Consensus 30 p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~-~~~~------~--~~~~~~~~~~~~---- 96 (274)
T PF09243_consen 30 PDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLR-AGPN------N--RNAEWRRVLYRD---- 96 (274)
T ss_pred cCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHh-cccc------c--ccchhhhhhhcc----
Confidence 4688899999999999766555543 3589999999999987776443 2211 0 011121110000
Q ss_pred CCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhc
Q 019839 194 NSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLM 241 (335)
Q Consensus 194 ~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL 241 (335)
.......|+||++.++-.-.. ....+.+..+-
T Consensus 97 ---------------~~~~~~~DLvi~s~~L~EL~~-~~r~~lv~~LW 128 (274)
T PF09243_consen 97 ---------------FLPFPPDDLVIASYVLNELPS-AARAELVRSLW 128 (274)
T ss_pred ---------------cccCCCCcEEEEehhhhcCCc-hHHHHHHHHHH
Confidence 011224499999999988666 55666666663
No 201
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.15 E-value=0.0046 Score=65.35 Aligned_cols=76 Identities=14% Similarity=0.064 Sum_probs=58.3
Q ss_pred HHHHHHHHhhcCCCCC-CCCCeEEEEcCccCHHHHHHHHhC---------------------------------------
Q 019839 103 LVLADFVMHKMCTSSD-FNGIISLELGAGTGLAGILLSRVA--------------------------------------- 142 (335)
Q Consensus 103 ~~La~~l~~~~~~~~~-~~g~~VLELG~GtGL~gl~la~~~--------------------------------------- 142 (335)
..||.-|+... .. -.+..++|-+||+|.+.|.+|..+
T Consensus 175 etlAaa~l~~a---~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~ 251 (702)
T PRK11783 175 ENLAAAILLRS---GWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAG 251 (702)
T ss_pred HHHHHHHHHHc---CCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhc
Confidence 35666555542 22 257899999999999999887641
Q ss_pred -----CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 143 -----WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 143 -----~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
.+|+++|+++.+++.++.|+..++. ...+.+...|+.+.
T Consensus 252 ~~~~~~~i~G~Did~~av~~A~~N~~~~g~----~~~i~~~~~D~~~~ 295 (702)
T PRK11783 252 LAELPSKFYGSDIDPRVIQAARKNARRAGV----AELITFEVKDVADL 295 (702)
T ss_pred ccccCceEEEEECCHHHHHHHHHHHHHcCC----CcceEEEeCChhhc
Confidence 2699999999999999999999875 34578888887764
No 202
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.15 E-value=0.0025 Score=55.83 Aligned_cols=100 Identities=11% Similarity=0.038 Sum_probs=65.6
Q ss_pred CCCCCCeEEEEcCccCHHHHHHHHhCCE-----------EEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 117 SDFNGIISLELGAGTGLAGILLSRVAWT-----------VFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 117 ~~~~g~~VLELG~GtGL~gl~la~~~~~-----------V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
..-+|..|||-=||+|-+-|.+|..+.. +++.|+++.++..++.|+...+. ...+.+...|..+.
T Consensus 25 ~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~----~~~i~~~~~D~~~l 100 (179)
T PF01170_consen 25 GWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGV----EDYIDFIQWDAREL 100 (179)
T ss_dssp T--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-----CGGEEEEE--GGGG
T ss_pred CCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhccc----CCceEEEecchhhc
Confidence 3346789999999999999998888533 67999999999999999987653 34566666665543
Q ss_pred CCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCc--------ccHHHHHHHHHHhccC
Q 019839 186 WPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSD--------DLTDALFHTLKRLMPL 243 (335)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~--------~~~~~L~~tl~~lL~~ 243 (335)
. ...+.+|+||+.--.-.. .+...+++.+.+++++
T Consensus 101 ~-----------------------~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~ 143 (179)
T PF01170_consen 101 P-----------------------LPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP 143 (179)
T ss_dssp G-----------------------GTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred c-----------------------cccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC
Confidence 1 023478988874443321 2345567777777765
No 203
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.13 E-value=0.0054 Score=57.18 Aligned_cols=120 Identities=13% Similarity=0.186 Sum_probs=74.9
Q ss_pred HHHHHHHHHhhcCC-CCCCCCCeEEEEcCccC--HHHHHHH--HhC-------CEEEEecCchHHHHHHHH------HHH
Q 019839 102 ELVLADFVMHKMCT-SSDFNGIISLELGAGTG--LAGILLS--RVA-------WTVFLTDHGNYILDNCAK------NVQ 163 (335)
Q Consensus 102 a~~La~~l~~~~~~-~~~~~g~~VLELG~GtG--L~gl~la--~~~-------~~V~~TD~~~~~l~~~~~------Nv~ 163 (335)
-..|.+.+...+.. ... +..+|+-.||+|| --||+++ ... .+|++||++..+|+.++. +..
T Consensus 78 f~~l~~~v~p~l~~~~~~-~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~ 156 (268)
T COG1352 78 FEELRDEVLPELVKRKKG-RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELL 156 (268)
T ss_pred HHHHHHHHHHHHHhhccC-CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhh
Confidence 34566666543210 011 4569999999999 4444444 332 379999999999998873 322
Q ss_pred HccCCC--------CC----------CCeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccc-
Q 019839 164 LNSGVF--------SH----------QGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVI- 224 (335)
Q Consensus 164 ~N~~~~--------~~----------~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDvi- 224 (335)
.|-... .. ...|.++.++...+.+ ..+.||+|+|-+|+
T Consensus 157 ~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~-----------------------~~~~fD~IfCRNVLI 213 (268)
T COG1352 157 RGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSP-----------------------FLGKFDLIFCRNVLI 213 (268)
T ss_pred ccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCcc-----------------------ccCCCCEEEEcceEE
Confidence 221100 00 1234444444444321 23579999999988
Q ss_pred c-CcccHHHHHHHHHHhccCCC
Q 019839 225 Y-SDDLTDALFHTLKRLMPLGS 245 (335)
Q Consensus 225 Y-~~~~~~~L~~tl~~lL~~~~ 245 (335)
| +.+....++..+...|++||
T Consensus 214 YFd~~~q~~il~~f~~~L~~gG 235 (268)
T COG1352 214 YFDEETQERILRRFADSLKPGG 235 (268)
T ss_pred eeCHHHHHHHHHHHHHHhCCCC
Confidence 3 35677889999999999988
No 204
>PHA01634 hypothetical protein
Probab=97.09 E-value=0.0029 Score=52.02 Aligned_cols=51 Identities=8% Similarity=-0.043 Sum_probs=46.3
Q ss_pred CCCCCCeEEEEcCccCHHHHHHHHhC-CEEEEecCchHHHHHHHHHHHHccC
Q 019839 117 SDFNGIISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDNCAKNVQLNSG 167 (335)
Q Consensus 117 ~~~~g~~VLELG~GtGL~gl~la~~~-~~V~~TD~~~~~l~~~~~Nv~~N~~ 167 (335)
..+++++|+++||+.|-.+|..+..| +.|++...++.+.+.++.|++.|..
T Consensus 25 idvk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI 76 (156)
T PHA01634 25 LNVYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNI 76 (156)
T ss_pred eeecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhhee
Confidence 45899999999999999999999886 5899999999999999999999863
No 205
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=97.08 E-value=0.00076 Score=60.06 Aligned_cols=103 Identities=16% Similarity=0.210 Sum_probs=60.8
Q ss_pred CCCeEEEEcCccC--HHHHHH--HHh----C---CEEEEecCchHHHHHHHHHH-HHccCCCC-----------------
Q 019839 120 NGIISLELGAGTG--LAGILL--SRV----A---WTVFLTDHGNYILDNCAKNV-QLNSGVFS----------------- 170 (335)
Q Consensus 120 ~g~~VLELG~GtG--L~gl~l--a~~----~---~~V~~TD~~~~~l~~~~~Nv-~~N~~~~~----------------- 170 (335)
+..+|+-.||+|| .-||++ ... . .+|++||+++.+|+.+++=+ ..+.....
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 4468999999999 444443 331 1 38999999999998887321 00100000
Q ss_pred ---C--CCeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccC--cccHHHHHHHHHHhccC
Q 019839 171 ---H--QGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYS--DDLTDALFHTLKRLMPL 243 (335)
Q Consensus 171 ---~--~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~--~~~~~~L~~tl~~lL~~ 243 (335)
+ ...|.+..++..+.. ...++||+|+|-+|+.+ .+....+++.+.+.|+|
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~-----------------------~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~p 167 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPD-----------------------PPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKP 167 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S-----------------------------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEE
T ss_pred eEChHHcCceEEEecccCCCC-----------------------cccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCC
Confidence 0 234566666655511 13458999999999843 56778899999999999
Q ss_pred CC
Q 019839 244 GS 245 (335)
Q Consensus 244 ~~ 245 (335)
||
T Consensus 168 gG 169 (196)
T PF01739_consen 168 GG 169 (196)
T ss_dssp EE
T ss_pred CC
Confidence 87
No 206
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=97.04 E-value=0.0018 Score=61.01 Aligned_cols=103 Identities=14% Similarity=0.211 Sum_probs=66.6
Q ss_pred CCeEEEEcCccC--HHHHHHH--Hh------CCEEEEecCchHHHHHHHHHHH-----HccC------------------
Q 019839 121 GIISLELGAGTG--LAGILLS--RV------AWTVFLTDHGNYILDNCAKNVQ-----LNSG------------------ 167 (335)
Q Consensus 121 g~~VLELG~GtG--L~gl~la--~~------~~~V~~TD~~~~~l~~~~~Nv~-----~N~~------------------ 167 (335)
..+|+-.||.|| .-+|++. .. ..+|++||+++.+|+.++.-+= .+-.
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 369999999999 4444443 32 1379999999999999885430 0000
Q ss_pred -CCCC--CCeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccC--cccHHHHHHHHHHhcc
Q 019839 168 -VFSH--QGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYS--DDLTDALFHTLKRLMP 242 (335)
Q Consensus 168 -~~~~--~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~--~~~~~~L~~tl~~lL~ 242 (335)
.+.. ...|.+..+|..+.. ....++||+|+|-+|+.+ .+....+++.+.+.|+
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~----------------------~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~ 253 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQ----------------------WAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLK 253 (287)
T ss_pred EEEChHHHccCEEEcccCCCCC----------------------CccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhC
Confidence 0000 123344444433310 011358999999888844 4678899999999999
Q ss_pred CCC
Q 019839 243 LGS 245 (335)
Q Consensus 243 ~~~ 245 (335)
|||
T Consensus 254 pgG 256 (287)
T PRK10611 254 PDG 256 (287)
T ss_pred CCc
Confidence 988
No 207
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=97.03 E-value=0.0053 Score=55.17 Aligned_cols=135 Identities=16% Similarity=0.091 Sum_probs=76.0
Q ss_pred CCCCeEEEEcCccCHHHH-HHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839 119 FNGIISLELGAGTGLAGI-LLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA 197 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl-~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~ 197 (335)
..-.++||.|||.|-++- .+.+...+|-+.|..+..++.++..+..+.. ....+...-..+.
T Consensus 54 ~~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~-----~v~~~~~~gLQ~f------------ 116 (218)
T PF05891_consen 54 PKFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNP-----RVGEFYCVGLQDF------------ 116 (218)
T ss_dssp ---SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGC-----CEEEEEES-GGG-------------
T ss_pred CCcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCC-----CcceEEecCHhhc------------
Confidence 345799999999998874 5566788999999999999999876544221 1122222211111
Q ss_pred cccccccCcchhhccCCccEEEEeccccC--cccHHHHHHHHHHhccCCCcceeeceEEEEEEeeeccccccchhhhhhh
Q 019839 198 SQERYSWNSSELKEVQRASVLLAADVIYS--DDLTDALFHTLKRLMPLGSKKVLVNMVLYLALEKRYNFSLNDLDVVANG 275 (335)
Q Consensus 198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~--~~~~~~L~~tl~~lL~~~~~~~~~~p~i~ia~~~R~~ft~~~~d~v~~~ 275 (335)
. +...+||+|..-=|+=| +++.-.+++-++..|+++|-.++-+ . ++......|-.+|- .+...
T Consensus 117 -------~----P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKE-N--~~~~~~~~~D~~Ds-SvTRs 181 (218)
T PF05891_consen 117 -------T----PEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKE-N--VSSSGFDEFDEEDS-SVTRS 181 (218)
T ss_dssp --------------TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEE-E--EESSSEEEEETTTT-EEEEE
T ss_pred -------c----CCCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEe-c--CCCCCCcccCCccC-eeecC
Confidence 1 12358999999777655 4566778899999999876222111 0 01100111111222 24577
Q ss_pred hhHHHHHHhh
Q 019839 276 YSHFRSYIME 285 (335)
Q Consensus 276 ~~~f~~~l~~ 285 (335)
..+|++.+..
T Consensus 182 ~~~~~~lF~~ 191 (218)
T PF05891_consen 182 DEHFRELFKQ 191 (218)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8899998864
No 208
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=96.94 E-value=0.0052 Score=58.23 Aligned_cols=119 Identities=11% Similarity=0.095 Sum_probs=71.1
Q ss_pred HHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHH---------hCCEEEEecCchHHHHHHHHHHHHccCCCCCCC
Q 019839 103 LVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSR---------VAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQG 173 (335)
Q Consensus 103 ~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~---------~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~ 173 (335)
..++++|.... ....+.+|+|-.||+|-.-+.+.+ ...++++.|+++.++..++.|+..++.. ..
T Consensus 32 ~~i~~l~~~~~---~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~---~~ 105 (311)
T PF02384_consen 32 REIVDLMVKLL---NPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGID---NS 105 (311)
T ss_dssp HHHHHHHHHHH---TT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHH---CB
T ss_pred HHHHHHHHhhh---hccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccc---cc
Confidence 34555555543 345677999999999987777765 2468999999999999999998776532 12
Q ss_pred eeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCc---------------------ccHHH
Q 019839 174 SVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSD---------------------DLTDA 232 (335)
Q Consensus 174 ~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~---------------------~~~~~ 232 (335)
...+...|...... .....+||+||+.-.+-.. ...-+
T Consensus 106 ~~~i~~~d~l~~~~---------------------~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (311)
T PF02384_consen 106 NINIIQGDSLENDK---------------------FIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYA 164 (311)
T ss_dssp GCEEEES-TTTSHS---------------------CTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHH
T ss_pred cccccccccccccc---------------------cccccccccccCCCCccccccccccccccccccccCCCccchhhh
Confidence 23445544433211 0013578888885433211 11224
Q ss_pred HHHHHHHhccCCCcce
Q 019839 233 LFHTLKRLMPLGSKKV 248 (335)
Q Consensus 233 L~~tl~~lL~~~~~~~ 248 (335)
++..+-+.|+++|+..
T Consensus 165 Fi~~~l~~Lk~~G~~~ 180 (311)
T PF02384_consen 165 FIEHALSLLKPGGRAA 180 (311)
T ss_dssp HHHHHHHTEEEEEEEE
T ss_pred hHHHHHhhccccccee
Confidence 6777778888887665
No 209
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=96.93 E-value=0.0052 Score=52.96 Aligned_cols=121 Identities=15% Similarity=0.141 Sum_probs=78.6
Q ss_pred CccceeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhC---CEEEEecCchHHHHHHHHHHHHccCCC
Q 019839 93 SVGLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVA---WTVFLTDHGNYILDNCAKNVQLNSGVF 169 (335)
Q Consensus 93 ~~G~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~---~~V~~TD~~~~~l~~~~~Nv~~N~~~~ 169 (335)
.+|. +-+++-.||+-|.+.. ..-.|+-|||||.|||...=++.+.| ..+++.+++++-...+.+..
T Consensus 25 tVGa-I~PsSs~lA~~M~s~I---~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~------- 93 (194)
T COG3963 25 TVGA-ILPSSSILARKMASVI---DPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY------- 93 (194)
T ss_pred eeee-ecCCcHHHHHHHHhcc---CcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC-------
Confidence 3453 3467777888887764 44578899999999999888777775 47999999998887775442
Q ss_pred CCCCeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcc--cHHHHHHHHHHhccCCC
Q 019839 170 SHQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDD--LTDALFHTLKRLMPLGS 245 (335)
Q Consensus 170 ~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~--~~~~L~~tl~~lL~~~~ 245 (335)
..+.+.+.|-.+..... ..-....||.||++=-+-+.+ ..-++++.+...+..|+
T Consensus 94 ---p~~~ii~gda~~l~~~l------------------~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg 150 (194)
T COG3963 94 ---PGVNIINGDAFDLRTTL------------------GEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGG 150 (194)
T ss_pred ---CCccccccchhhHHHHH------------------hhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCC
Confidence 22223333322110000 001245799999987776654 34556777777777755
No 210
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=96.93 E-value=0.0013 Score=59.47 Aligned_cols=131 Identities=13% Similarity=0.158 Sum_probs=84.5
Q ss_pred CCCccceeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCC-EEEEecCchHHHHHHHHHHHHccCCC
Q 019839 91 IPSVGLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAW-TVFLTDHGNYILDNCAKNVQLNSGVF 169 (335)
Q Consensus 91 ~~~~G~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~-~V~~TD~~~~~l~~~~~Nv~~N~~~~ 169 (335)
+.+.+.--|..++.=+..+ ..-+|.+|||-..|.|.++|.+++.|+ +|+-.+.+|.+|++++-|= ...
T Consensus 112 hrt~~tdP~~Dt~~Kv~~V-------~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNP----wSr 180 (287)
T COG2521 112 HRTKGTDPLEDTLAKVELV-------KVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNP----WSR 180 (287)
T ss_pred ecccCcCcHHHHHhhhhee-------ccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCC----CCc
Confidence 3445555565554333322 234799999999999999999999998 9999999999998887552 111
Q ss_pred CC-CCeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcc--------cHHHHHHHHHHh
Q 019839 170 SH-QGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDD--------LTDALFHTLKRL 240 (335)
Q Consensus 170 ~~-~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~--------~~~~L~~tl~~l 240 (335)
+. ...+.+...|-.+.. +.+ .+..||+||- +++ ..+.|.+.+.++
T Consensus 181 ~l~~~~i~iilGD~~e~V-------------~~~--------~D~sfDaIiH-----DPPRfS~AgeLYseefY~El~Ri 234 (287)
T COG2521 181 ELFEIAIKIILGDAYEVV-------------KDF--------DDESFDAIIH-----DPPRFSLAGELYSEEFYRELYRI 234 (287)
T ss_pred cccccccEEecccHHHHH-------------hcC--------CccccceEee-----CCCccchhhhHhHHHHHHHHHHH
Confidence 00 123344333322211 111 2457999874 433 356788999999
Q ss_pred ccCCCcceeeceEEEEEEee-ecc
Q 019839 241 MPLGSKKVLVNMVLYLALEK-RYN 263 (335)
Q Consensus 241 L~~~~~~~~~~p~i~ia~~~-R~~ 263 (335)
|+++|+.. =|+...- ||.
T Consensus 235 LkrgGrlF-----HYvG~Pg~ryr 253 (287)
T COG2521 235 LKRGGRLF-----HYVGNPGKRYR 253 (287)
T ss_pred cCcCCcEE-----EEeCCCCcccc
Confidence 99999876 6776554 443
No 211
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.0086 Score=53.43 Aligned_cols=71 Identities=15% Similarity=0.212 Sum_probs=50.5
Q ss_pred ccceeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh----CCEEEEecCchHHHHHHHHHHHHc
Q 019839 94 VGLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV----AWTVFLTDHGNYILDNCAKNVQLN 165 (335)
Q Consensus 94 ~G~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~----~~~V~~TD~~~~~l~~~~~Nv~~N 165 (335)
.|..+--+|..+-.++++.+. ..+.+|.+.|++|+|+|.++-.++++ |..+++.|..+++++..++|+..-
T Consensus 57 ~G~n~~iSAp~mha~~le~L~-~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~ 131 (237)
T KOG1661|consen 57 IGYNLTISAPHMHATALEYLD-DHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKD 131 (237)
T ss_pred cCCceEEcchHHHHHHHHHHH-HhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhh
Confidence 343333355555444444320 12578999999999999888888865 345699999999999999999764
No 212
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=96.90 E-value=0.00038 Score=61.74 Aligned_cols=94 Identities=17% Similarity=0.274 Sum_probs=72.3
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCccc
Q 019839 120 NGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQ 199 (335)
Q Consensus 120 ~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~ 199 (335)
..+++||||||-|=+++.++..-.+|++|+.+..|.+.+++. |- -....++|.+.
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~kk---~y--------nVl~~~ew~~t-------------- 166 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKK---NY--------NVLTEIEWLQT-------------- 166 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhhc---CC--------ceeeehhhhhc--------------
Confidence 348999999999999999988877899999998888777532 11 12245677664
Q ss_pred cccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcceee
Q 019839 200 ERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLV 250 (335)
Q Consensus 200 ~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~~~ 250 (335)
.-++|+|.|-.++=.-...-.|++-|...++|....+|+
T Consensus 167 ------------~~k~dli~clNlLDRc~~p~kLL~Di~~vl~psngrviv 205 (288)
T KOG3987|consen 167 ------------DVKLDLILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIV 205 (288)
T ss_pred ------------CceeehHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEE
Confidence 238999999888877777788999999999995544433
No 213
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=96.83 E-value=0.0047 Score=52.95 Aligned_cols=78 Identities=9% Similarity=-0.061 Sum_probs=56.8
Q ss_pred EEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEecccc
Q 019839 146 FLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIY 225 (335)
Q Consensus 146 ~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY 225 (335)
++.|.+++||+.++++........ ..++.+...|-.+.. ...+.||+|+++.++.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~--~~~i~~~~~d~~~lp-----------------------~~~~~fD~v~~~~~l~ 55 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSC--YKCIEWIEGDAIDLP-----------------------FDDCEFDAVTMGYGLR 55 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccC--CCceEEEEechhhCC-----------------------CCCCCeeEEEecchhh
Confidence 378999999999987764322100 235666666544321 1234899999999999
Q ss_pred CcccHHHHHHHHHHhccCCCcce
Q 019839 226 SDDLTDALFHTLKRLMPLGSKKV 248 (335)
Q Consensus 226 ~~~~~~~L~~tl~~lL~~~~~~~ 248 (335)
+......+++.+.++|+|||..+
T Consensus 56 ~~~d~~~~l~ei~rvLkpGG~l~ 78 (160)
T PLN02232 56 NVVDRLRAMKEMYRVLKPGSRVS 78 (160)
T ss_pred cCCCHHHHHHHHHHHcCcCeEEE
Confidence 98889999999999999998654
No 214
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=96.82 E-value=0.0091 Score=53.07 Aligned_cols=99 Identities=13% Similarity=0.100 Sum_probs=65.6
Q ss_pred CeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCccc
Q 019839 122 IISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQ 199 (335)
Q Consensus 122 ~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~ 199 (335)
..+||||||.|-.-+.+|+. ...+++.|+....+..+...+...+ ..++.+...|-......
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~-----l~Nv~~~~~da~~~l~~----------- 82 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRG-----LKNVRFLRGDARELLRR----------- 82 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHT-----TSSEEEEES-CTTHHHH-----------
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhc-----ccceEEEEccHHHHHhh-----------
Confidence 38999999999888888877 5799999999988888888887765 46788887765442110
Q ss_pred cccccCcchhhccCCccEEEE--eccccCcc------cHHHHHHHHHHhccCCC
Q 019839 200 ERYSWNSSELKEVQRASVLLA--ADVIYSDD------LTDALFHTLKRLMPLGS 245 (335)
Q Consensus 200 ~~~~w~~~~~~~~~~fDlIla--sDviY~~~------~~~~L~~tl~~lL~~~~ 245 (335)
....+.+|-|.. .|--.... ....+++.+.++|++||
T Consensus 83 ---------~~~~~~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG 127 (195)
T PF02390_consen 83 ---------LFPPGSVDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGG 127 (195)
T ss_dssp ---------HSTTTSEEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEE
T ss_pred ---------cccCCchheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCC
Confidence 111235555443 22211111 46889999999999987
No 215
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=96.75 E-value=0.0049 Score=51.68 Aligned_cols=48 Identities=21% Similarity=0.275 Sum_probs=40.6
Q ss_pred CCCCeEEEEcCccCHHHHHHHH-----h-CCEEEEecCchHHHHHHHHHHHHcc
Q 019839 119 FNGIISLELGAGTGLAGILLSR-----V-AWTVFLTDHGNYILDNCAKNVQLNS 166 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~la~-----~-~~~V~~TD~~~~~l~~~~~Nv~~N~ 166 (335)
-+..+|+|+|||-|.+|.+++. . +.+|++.|.++..++.+.+..+...
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~ 77 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLG 77 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhc
Confidence 5678999999999999999998 3 6799999999988888877765543
No 216
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=96.72 E-value=0.012 Score=56.53 Aligned_cols=112 Identities=17% Similarity=0.135 Sum_probs=76.4
Q ss_pred HHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEE-EeccCC
Q 019839 105 LADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHV-RDLNWM 183 (335)
Q Consensus 105 La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v-~~ldW~ 183 (335)
||+.+... ....+|..|||==||||-.-+.+...|.+|+++|++..|+.-++.|++.-+. ....+ ..+|-.
T Consensus 185 lAR~mVNL---a~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i-----~~~~~~~~~Da~ 256 (347)
T COG1041 185 LARAMVNL---ARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGI-----EDYPVLKVLDAT 256 (347)
T ss_pred HHHHHHHH---hccccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCc-----CceeEEEecccc
Confidence 45544433 3567899999999999999999999999999999999999999999987642 11111 111222
Q ss_pred CCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCc----------ccHHHHHHHHHHhccCCCcce
Q 019839 184 NPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSD----------DLTDALFHTLKRLMPLGSKKV 248 (335)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~----------~~~~~L~~tl~~lL~~~~~~~ 248 (335)
+..- ....+|-|+. |.-|-. ++...+++++.+.|+++|..+
T Consensus 257 ~lpl-----------------------~~~~vdaIat-DPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~v 307 (347)
T COG1041 257 NLPL-----------------------RDNSVDAIAT-DPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIV 307 (347)
T ss_pred cCCC-----------------------CCCccceEEe-cCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEE
Confidence 1100 0113666553 444432 457788999999999977544
No 217
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=96.70 E-value=0.0072 Score=61.70 Aligned_cols=47 Identities=13% Similarity=0.133 Sum_probs=39.5
Q ss_pred CCCeEEEEcCccCHHHHHHHHhC----------CEEEEecCchHHHHHHHHHHHHcc
Q 019839 120 NGIISLELGAGTGLAGILLSRVA----------WTVFLTDHGNYILDNCAKNVQLNS 166 (335)
Q Consensus 120 ~g~~VLELG~GtGL~gl~la~~~----------~~V~~TD~~~~~l~~~~~Nv~~N~ 166 (335)
.+.+|||.|||+|...+.++... .++++.|+++.++..++.|+....
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~ 87 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA 87 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC
Confidence 55799999999998888777642 478999999999999999987654
No 218
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=96.69 E-value=0.011 Score=54.58 Aligned_cols=103 Identities=14% Similarity=0.063 Sum_probs=67.8
Q ss_pred CCCeEEEEcCccCHHHHHHHHhC--CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839 120 NGIISLELGAGTGLAGILLSRVA--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA 197 (335)
Q Consensus 120 ~g~~VLELG~GtGL~gl~la~~~--~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~ 197 (335)
+.++||-||-|.|.+.-.+.+.. .+|++.|+++.+++.+++-......... .+++++..-|=....
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~-d~r~~i~~~Dg~~~l----------- 143 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLD-DPRVRIIIGDGRKFL----------- 143 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGG-STTEEEEESTHHHHH-----------
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccC-CCceEEEEhhhHHHH-----------
Confidence 67899999999998888877774 7999999999999999987665432111 355666544411110
Q ss_pred cccccccCcchhhccC-CccEEEE--eccccCc--ccHHHHHHHHHHhccCCC
Q 019839 198 SQERYSWNSSELKEVQ-RASVLLA--ADVIYSD--DLTDALFHTLKRLMPLGS 245 (335)
Q Consensus 198 ~~~~~~w~~~~~~~~~-~fDlIla--sDviY~~--~~~~~L~~tl~~lL~~~~ 245 (335)
....+ +||+|+. .|-.... -....+++.+++.|+++|
T Consensus 144 -----------~~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~G 185 (246)
T PF01564_consen 144 -----------KETQEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDG 185 (246)
T ss_dssp -----------HTSSST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEE
T ss_pred -----------HhccCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCc
Confidence 01123 8999997 2211111 135789999999999987
No 219
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=96.60 E-value=0.013 Score=56.32 Aligned_cols=107 Identities=18% Similarity=0.175 Sum_probs=67.7
Q ss_pred ehhHHHHHHHHHhhcC----CCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCe
Q 019839 99 WKAELVLADFVMHKMC----TSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGS 174 (335)
Q Consensus 99 W~aa~~La~~l~~~~~----~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~ 174 (335)
=++++-|.+.+..... .....+|++||||||++|--+-.+.+.|.+|++.|.++ + ..++.. .++
T Consensus 186 SRs~lKLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~-l----~~~L~~-------~~~ 253 (357)
T PRK11760 186 SRSTLKLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGP-M----AQSLMD-------TGQ 253 (357)
T ss_pred ChHHHHHHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechh-c----CHhhhC-------CCC
Confidence 4667777776554320 01246899999999999999999999999999999763 2 233322 244
Q ss_pred eEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCC
Q 019839 175 VHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLG 244 (335)
Q Consensus 175 v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~ 244 (335)
|.....+=....+ ..+.+|+|++ |++-.+. .+.+.+.+.+..+
T Consensus 254 V~h~~~d~fr~~p-----------------------~~~~vDwvVc-Dmve~P~---rva~lm~~Wl~~g 296 (357)
T PRK11760 254 VEHLRADGFKFRP-----------------------PRKNVDWLVC-DMVEKPA---RVAELMAQWLVNG 296 (357)
T ss_pred EEEEeccCcccCC-----------------------CCCCCCEEEE-ecccCHH---HHHHHHHHHHhcC
Confidence 5554443221111 1347898886 5554443 5566666777654
No 220
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=96.58 E-value=0.012 Score=52.84 Aligned_cols=54 Identities=17% Similarity=0.174 Sum_probs=45.5
Q ss_pred EEEEcCccCHHHHHHHHhCC--EEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEecc
Q 019839 124 SLELGAGTGLAGILLSRVAW--TVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLN 181 (335)
Q Consensus 124 VLELG~GtGL~gl~la~~~~--~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ld 181 (335)
|.|+||--|.+++.+.+.|. +|+++|+++.-++.++.|+..++. ..++.++..|
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l----~~~i~~rlgd 56 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGL----EDRIEVRLGD 56 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-----TTTEEEEE-S
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC----cccEEEEECC
Confidence 68999999999999999975 899999999999999999998775 4567777665
No 221
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=96.44 E-value=0.19 Score=45.41 Aligned_cols=165 Identities=19% Similarity=0.214 Sum_probs=88.7
Q ss_pred CccceeehhH-HHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh-C--CEEEEecCchHHHHHHHHHHHHccCC
Q 019839 93 SVGLQVWKAE-LVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV-A--WTVFLTDHGNYILDNCAKNVQLNSGV 168 (335)
Q Consensus 93 ~~G~~vW~aa-~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~-~--~~V~~TD~~~~~l~~~~~Nv~~N~~~ 168 (335)
..+.++|+.- --||..|+.....-...+|.+||=|||.+|.+=--++.. | ..|++.+.++.....+- ++...
T Consensus 45 ~~eYR~W~P~RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~-~la~~--- 120 (229)
T PF01269_consen 45 KVEYRVWNPFRSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLL-NLAKK--- 120 (229)
T ss_dssp -EEEEEE-TTT-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHH-HHHHH---
T ss_pred ccceeecCchhhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHH-HHhcc---
Confidence 4588999862 234444443332224567999999999999655555544 3 48999999996554443 22221
Q ss_pred CCCCCeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839 169 FSHQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV 248 (335)
Q Consensus 169 ~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~ 248 (335)
..|+-..--|-..+ ..|. ...+.+|+|++ ||- .+++.+-++...+.+|+++|.
T Consensus 121 ---R~NIiPIl~DAr~P--------------~~Y~------~lv~~VDvI~~-DVa-Qp~Qa~I~~~Na~~fLk~gG~-- 173 (229)
T PF01269_consen 121 ---RPNIIPILEDARHP--------------EKYR------MLVEMVDVIFQ-DVA-QPDQARIAALNARHFLKPGGH-- 173 (229)
T ss_dssp ---STTEEEEES-TTSG--------------GGGT------TTS--EEEEEE-E-S-STTHHHHHHHHHHHHEEEEEE--
T ss_pred ---CCceeeeeccCCCh--------------HHhh------cccccccEEEe-cCC-ChHHHHHHHHHHHhhccCCcE--
Confidence 23343333232211 1111 12347777775 444 457888889999999999874
Q ss_pred eeceEEEEEEeeeccccccchhhhhhhhhHHHHHHhhhhcccccccccCCCeee-EEecCC
Q 019839 249 LVNMVLYLALEKRYNFSLNDLDVVANGYSHFRSYIMEEGEHRRFERESFPAFVG-KCIDLN 308 (335)
Q Consensus 249 ~~~p~i~ia~~~R~~ft~~~~d~v~~~~~~f~~~l~~~~~~~~~~~~~~~~f~v-~~i~~~ 308 (335)
++++.+-|.. |++++.-.-|........ ..+|.+ +++.+.
T Consensus 174 -----~~i~iKa~si------D~t~~p~~vf~~e~~~L~---------~~~~~~~e~i~Le 214 (229)
T PF01269_consen 174 -----LIISIKARSI------DSTADPEEVFAEEVKKLK---------EEGFKPLEQITLE 214 (229)
T ss_dssp -----EEEEEEHHHH-------SSSSHHHHHHHHHHHHH---------CTTCEEEEEEE-T
T ss_pred -----EEEEEecCcc------cCcCCHHHHHHHHHHHHH---------HcCCChheEeccC
Confidence 5666666644 444444455666554322 124655 556664
No 222
>PRK10742 putative methyltransferase; Provisional
Probab=96.42 E-value=0.012 Score=53.99 Aligned_cols=48 Identities=13% Similarity=0.097 Sum_probs=43.4
Q ss_pred CCCCC--eEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHc
Q 019839 118 DFNGI--ISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLN 165 (335)
Q Consensus 118 ~~~g~--~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N 165 (335)
.-+|. +|||+=||+|.-|+.+|..|++|++.+.++.+..+++.|++.-
T Consensus 84 lk~g~~p~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra 133 (250)
T PRK10742 84 IKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARG 133 (250)
T ss_pred CCCCCCCEEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHh
Confidence 34555 8999999999999999999999999999999999999999873
No 223
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=96.40 E-value=0.0025 Score=57.60 Aligned_cols=96 Identities=7% Similarity=0.051 Sum_probs=68.6
Q ss_pred CCCeEEEEcCccCHHHHHHHHhC-CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcc
Q 019839 120 NGIISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS 198 (335)
Q Consensus 120 ~g~~VLELG~GtGL~gl~la~~~-~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~ 198 (335)
....+++||||.|.++-.+-..+ .+++.+|.+-.|++.++..- .+.+.+..+--.++..+
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~q---------dp~i~~~~~v~DEE~Ld---------- 132 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQ---------DPSIETSYFVGDEEFLD---------- 132 (325)
T ss_pred hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccC---------CCceEEEEEecchhccc----------
Confidence 34689999999998887766665 58999999999998886421 12233322221111000
Q ss_pred ccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCC
Q 019839 199 QERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGS 245 (335)
Q Consensus 199 ~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~ 245 (335)
-...++|+||.|--+|+..+.+.-+..++..++|.|
T Consensus 133 -----------f~ens~DLiisSlslHW~NdLPg~m~~ck~~lKPDg 168 (325)
T KOG2940|consen 133 -----------FKENSVDLIISSLSLHWTNDLPGSMIQCKLALKPDG 168 (325)
T ss_pred -----------ccccchhhhhhhhhhhhhccCchHHHHHHHhcCCCc
Confidence 023489999999999999988888999999999987
No 224
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=96.32 E-value=0.019 Score=54.46 Aligned_cols=121 Identities=11% Similarity=0.117 Sum_probs=75.7
Q ss_pred eehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhC-CEEEEecCchHHHHHHHHHHHHccCCCC-CCCee
Q 019839 98 VWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDNCAKNVQLNSGVFS-HQGSV 175 (335)
Q Consensus 98 vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~-~~V~~TD~~~~~l~~~~~Nv~~N~~~~~-~~~~v 175 (335)
=|=-+.++-.|. -++..+++||||-|-=-+-.-+.| ..++++|+.+-.++.|+...+.-..... ..-.+
T Consensus 104 NwIKs~LI~~y~---------~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a 174 (389)
T KOG1975|consen 104 NWIKSVLINLYT---------KRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTA 174 (389)
T ss_pred HHHHHHHHHHHh---------ccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhccccee
Confidence 466666666665 466789999999985555555554 5899999999889999866643211100 01123
Q ss_pred EEEeccCCCCCCCCccCCCCCccccccccCcchhh-ccCCccEEEEeccccC----cccHHHHHHHHHHhccCCC
Q 019839 176 HVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELK-EVQRASVLLAADVIYS----DDLTDALFHTLKRLMPLGS 245 (335)
Q Consensus 176 ~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~-~~~~fDlIlasDviY~----~~~~~~L~~tl~~lL~~~~ 245 (335)
.+...|-..... ... ++ ...+||+|=+--++|+ .+..+-++..+.+.|+|||
T Consensus 175 ~f~~~Dc~~~~l-----------~d~-------~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG 231 (389)
T KOG1975|consen 175 VFIAADCFKERL-----------MDL-------LEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGG 231 (389)
T ss_pred EEEEeccchhHH-----------HHh-------ccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCc
Confidence 333333222100 000 11 1234999988888866 3567788999999999998
No 225
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=96.24 E-value=0.019 Score=54.32 Aligned_cols=46 Identities=9% Similarity=-0.044 Sum_probs=40.1
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhC---CEEEEecCchHHHHHHHHHHHH
Q 019839 119 FNGIISLELGAGTGLAGILLSRVA---WTVFLTDHGNYILDNCAKNVQL 164 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~la~~~---~~V~~TD~~~~~l~~~~~Nv~~ 164 (335)
-+|..+||.+||.|--+..+++.. .+|++.|.++++++.++.++..
T Consensus 18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~ 66 (296)
T PRK00050 18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP 66 (296)
T ss_pred CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc
Confidence 467799999999999999888873 6899999999999999887643
No 226
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=96.21 E-value=0.036 Score=52.11 Aligned_cols=99 Identities=13% Similarity=0.112 Sum_probs=67.0
Q ss_pred CeEEEEcCccCHHHHHHHHhC--CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCccc
Q 019839 122 IISLELGAGTGLAGILLSRVA--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQ 199 (335)
Q Consensus 122 ~~VLELG~GtGL~gl~la~~~--~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~ 199 (335)
++||-||-|.|-+.-.+.+.. .++++.|+++.+++.+++=+..-..... .+++.+..-|=.+.
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~-dpRv~i~i~Dg~~~-------------- 142 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGAD-DPRVEIIIDDGVEF-------------- 142 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccC-CCceEEEeccHHHH--------------
Confidence 699999999999999998885 7999999999999999876543221111 24444443331111
Q ss_pred cccccCcchhh-ccCCccEEEEeccccCcc-----cHHHHHHHHHHhccCCC
Q 019839 200 ERYSWNSSELK-EVQRASVLLAADVIYSDD-----LTDALFHTLKRLMPLGS 245 (335)
Q Consensus 200 ~~~~w~~~~~~-~~~~fDlIlasDviY~~~-----~~~~L~~tl~~lL~~~~ 245 (335)
+. ...+||+||. |+.=... ....+++.++++|+++|
T Consensus 143 ---------v~~~~~~fDvIi~-D~tdp~gp~~~Lft~eFy~~~~~~L~~~G 184 (282)
T COG0421 143 ---------LRDCEEKFDVIIV-DSTDPVGPAEALFTEEFYEGCRRALKEDG 184 (282)
T ss_pred ---------HHhCCCcCCEEEE-cCCCCCCcccccCCHHHHHHHHHhcCCCc
Confidence 11 1237999997 2211111 25789999999999988
No 227
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.17 E-value=0.058 Score=49.15 Aligned_cols=55 Identities=24% Similarity=0.241 Sum_probs=47.3
Q ss_pred cceeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhC-CEEEEecCch
Q 019839 95 GLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVA-WTVFLTDHGN 152 (335)
Q Consensus 95 G~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~-~~V~~TD~~~ 152 (335)
..-+-++++-|...+.+. .-.++|+.|||+||-||-..-++...| ++|++.|.+-
T Consensus 57 ~~yVSRG~~KL~~ale~F---~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~ 112 (245)
T COG1189 57 QPYVSRGGLKLEKALEEF---ELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGY 112 (245)
T ss_pred cCccccHHHHHHHHHHhc---CcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccC
Confidence 445668899999999876 367899999999999999999999884 6999999984
No 228
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=96.14 E-value=0.1 Score=41.24 Aligned_cols=97 Identities=20% Similarity=0.236 Sum_probs=59.8
Q ss_pred EEEEcCccCHHHHHHHHhC---CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcccc
Q 019839 124 SLELGAGTGLAGILLSRVA---WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQE 200 (335)
Q Consensus 124 VLELG~GtGL~gl~la~~~---~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~ 200 (335)
++|+|||+|... .++... ..+++.|.++.++...+.+... .. ...+.+...++.....+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~------------ 113 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AG----LGLVDFVVADALGGVLP------------ 113 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cC----CCceEEEEeccccCCCC------------
Confidence 999999999876 444443 3889999999888874433322 21 11145555554442000
Q ss_pred ccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcc
Q 019839 201 RYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKK 247 (335)
Q Consensus 201 ~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~ 247 (335)
......||++......+... ...++..+.+.++++|..
T Consensus 114 --------~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~l~~~g~~ 151 (257)
T COG0500 114 --------FEDSASFDLVISLLVLHLLP-PAKALRELLRVLKPGGRL 151 (257)
T ss_pred --------CCCCCceeEEeeeeehhcCC-HHHHHHHHHHhcCCCcEE
Confidence 00113799994444444444 788899999999987643
No 229
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=96.13 E-value=0.077 Score=49.51 Aligned_cols=47 Identities=23% Similarity=0.293 Sum_probs=39.5
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHcc
Q 019839 118 DFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNS 166 (335)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~ 166 (335)
.....+||==|||.|-++.-+|+.|..|.+.+.+-.| ++..|.-+|.
T Consensus 54 ~~~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~M--ll~s~fiLn~ 100 (270)
T PF07942_consen 54 DRSKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFM--LLASNFILNH 100 (270)
T ss_pred CCCccEEEEcCCCcchHHHHHhhccceEEEEEchHHH--HHHHHHHHcc
Confidence 3456799999999999999999999999999998666 4566776775
No 230
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.10 E-value=0.009 Score=59.68 Aligned_cols=129 Identities=15% Similarity=0.117 Sum_probs=79.5
Q ss_pred CCccceeehhHHHHHHHHHhhcCCCCCCCC---CeEEEEcCccCHHHHHHHHhCCEEEEe---cCchHHHHHHHHHHHHc
Q 019839 92 PSVGLQVWKAELVLADFVMHKMCTSSDFNG---IISLELGAGTGLAGILLSRVAWTVFLT---DHGNYILDNCAKNVQLN 165 (335)
Q Consensus 92 ~~~G~~vW~aa~~La~~l~~~~~~~~~~~g---~~VLELG~GtGL~gl~la~~~~~V~~T---D~~~~~l~~~~~Nv~~N 165 (335)
++.|.+...+|..-.+.|.+.. +....+ +.+||+|||+|..|-.+...+-.++.+ |.++..++.+. ++-
T Consensus 88 Pgggt~F~~Ga~~Yid~i~~~~--~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfal---eRG 162 (506)
T PF03141_consen 88 PGGGTMFPHGADHYIDQIAEMI--PLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFAL---ERG 162 (506)
T ss_pred CCCCccccCCHHHHHHHHHHHh--hccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhh---hcC
Confidence 4567788888888777777664 121232 379999999999998888887544333 33332222221 111
Q ss_pred cCCCCCCCeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCc-ccHHHHHHHHHHhccCC
Q 019839 166 SGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSD-DLTDALFHTLKRLMPLG 244 (335)
Q Consensus 166 ~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~-~~~~~L~~tl~~lL~~~ 244 (335)
-... .+.+-.+.|.+- ...||+|=++.|+-.- .....++-.+.|+|+||
T Consensus 163 vpa~--~~~~~s~rLPfp----------------------------~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpG 212 (506)
T PF03141_consen 163 VPAM--IGVLGSQRLPFP----------------------------SNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPG 212 (506)
T ss_pred cchh--hhhhccccccCC----------------------------ccchhhhhcccccccchhcccceeehhhhhhccC
Confidence 0000 011111233222 2479999999988653 33356788899999999
Q ss_pred CcceeeceEEE
Q 019839 245 SKKVLVNMVLY 255 (335)
Q Consensus 245 ~~~~~~~p~i~ 255 (335)
|-.+...|++|
T Consensus 213 Gyfv~S~ppv~ 223 (506)
T PF03141_consen 213 GYFVLSGPPVY 223 (506)
T ss_pred ceEEecCCccc
Confidence 98777777776
No 231
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=95.95 E-value=0.011 Score=54.82 Aligned_cols=115 Identities=17% Similarity=0.207 Sum_probs=64.5
Q ss_pred CCCCCCCeEEEEcCccCHHHHHHH-HhCCEEEEecCchHHHHHHHHHHHHccCCCCC-----------------------
Q 019839 116 SSDFNGIISLELGAGTGLAGILLS-RVAWTVFLTDHGNYILDNCAKNVQLNSGVFSH----------------------- 171 (335)
Q Consensus 116 ~~~~~g~~VLELG~GtGL~gl~la-~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~----------------------- 171 (335)
+...+|.++||+|||.-+..++.| ....+|+++|+.+..++.+++=++.- ....-
T Consensus 52 ~g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~-~a~DWs~~~~~v~~lEg~~~~~~e~e~~ 130 (256)
T PF01234_consen 52 SGGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKE-GAFDWSPFWKYVCELEGKREKWEEKEEK 130 (256)
T ss_dssp TSSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT--TS--THHHHHHHHHHTTSSSGHHHHHHH
T ss_pred ccCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCC-CCCCccHHHHHHHhccCCcchhhhHHHH
Confidence 456789999999999877655544 44679999999987777776543221 10000
Q ss_pred -CCee-EEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccC----cccHHHHHHHHHHhccCCC
Q 019839 172 -QGSV-HVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYS----DDLTDALFHTLKRLMPLGS 245 (335)
Q Consensus 172 -~~~v-~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~----~~~~~~L~~tl~~lL~~~~ 245 (335)
...| .|...|-.+..+-. ......++||+|+++-|+-. .+.....++.+.++|+|||
T Consensus 131 lR~~Vk~Vv~cDV~~~~pl~-----------------~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG 193 (256)
T PF01234_consen 131 LRRAVKQVVPCDVTQPNPLD-----------------PPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGG 193 (256)
T ss_dssp HHHHEEEEEE--TTSSSTTT-----------------TS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEE
T ss_pred HHHhhceEEEeeccCCCCCC-----------------ccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCc
Confidence 0001 12222222211100 00011235999999888754 4566777888888999988
Q ss_pred cce
Q 019839 246 KKV 248 (335)
Q Consensus 246 ~~~ 248 (335)
..+
T Consensus 194 ~Li 196 (256)
T PF01234_consen 194 HLI 196 (256)
T ss_dssp EEE
T ss_pred EEE
Confidence 754
No 232
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=95.94 E-value=0.034 Score=49.95 Aligned_cols=100 Identities=11% Similarity=0.109 Sum_probs=72.2
Q ss_pred CCCCeEEEEcCccCHHHHHHHHh-CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839 119 FNGIISLELGAGTGLAGILLSRV-AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA 197 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~la~~-~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~ 197 (335)
.+|.+||++|=|.|++.-.+-.. -..=++.+.+|++++.++.+.=.- ..++.+....|.+..+..
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~e------k~nViil~g~WeDvl~~L-------- 165 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWRE------KENVIILEGRWEDVLNTL-------- 165 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhccccc------ccceEEEecchHhhhccc--------
Confidence 58899999999999877666555 234567789999999998775332 467888999999875433
Q ss_pred cccccccCcchhhccCCccEEEEeccc-cCcccHHHHHHHHHHhccCCCc
Q 019839 198 SQERYSWNSSELKEVQRASVLLAADVI-YSDDLTDALFHTLKRLMPLGSK 246 (335)
Q Consensus 198 ~~~~~~w~~~~~~~~~~fDlIlasDvi-Y~~~~~~~L~~tl~~lL~~~~~ 246 (335)
..+.||=|+- |.+ -+-+.+-.+.+.+-+||+|+|.
T Consensus 166 -------------~d~~FDGI~y-DTy~e~yEdl~~~hqh~~rLLkP~gv 201 (271)
T KOG1709|consen 166 -------------PDKHFDGIYY-DTYSELYEDLRHFHQHVVRLLKPEGV 201 (271)
T ss_pred -------------cccCcceeEe-echhhHHHHHHHHHHHHhhhcCCCce
Confidence 2346887763 222 2234566678889999999873
No 233
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=95.92 E-value=0.11 Score=50.57 Aligned_cols=114 Identities=18% Similarity=0.123 Sum_probs=72.8
Q ss_pred CCCCCCeEEEEcCccCHHHHHHHHh----CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccC
Q 019839 117 SDFNGIISLELGAGTGLAGILLSRV----AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSL 192 (335)
Q Consensus 117 ~~~~g~~VLELG~GtGL~gl~la~~----~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~ 192 (335)
..-.|.+|||+.|+.|-=+..+|.+ |..|++.|.++.=++.++.|+++-+. .++.+...|-......
T Consensus 153 ~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~-----~nv~~~~~d~~~~~~~---- 223 (355)
T COG0144 153 DPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGV-----RNVIVVNKDARRLAEL---- 223 (355)
T ss_pred CCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCC-----CceEEEeccccccccc----
Confidence 3467899999999998545444444 35689999999999999999998763 3445554442211100
Q ss_pred CCCCccccccccCcchhhccCCccEEEE------eccc-------cC---------cccHHHHHHHHHHhccCCCcceee
Q 019839 193 GNSSASQERYSWNSSELKEVQRASVLLA------ADVI-------YS---------DDLTDALFHTLKRLMPLGSKKVLV 250 (335)
Q Consensus 193 ~~~~~~~~~~~w~~~~~~~~~~fDlIla------sDvi-------Y~---------~~~~~~L~~tl~~lL~~~~~~~~~ 250 (335)
.....+||-||. .-++ |. ......++....+++++||..
T Consensus 224 ----------------~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~L--- 284 (355)
T COG0144 224 ----------------LPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVL--- 284 (355)
T ss_pred ----------------ccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEE---
Confidence 001124777765 2222 22 224567888888999998754
Q ss_pred ceEEEEEEeee
Q 019839 251 NMVLYLALEKR 261 (335)
Q Consensus 251 ~p~i~ia~~~R 261 (335)
+|-.|..-
T Consensus 285 ---VYSTCS~~ 292 (355)
T COG0144 285 ---VYSTCSLT 292 (355)
T ss_pred ---EEEccCCc
Confidence 67777543
No 234
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=95.81 E-value=0.12 Score=46.39 Aligned_cols=132 Identities=14% Similarity=0.182 Sum_probs=69.2
Q ss_pred eeehhH--HHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCe
Q 019839 97 QVWKAE--LVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGS 174 (335)
Q Consensus 97 ~vW~aa--~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~ 174 (335)
+-||-- -...+||... -++..|-|+|||-+.++-.+ ..+.+|..-|+-. .|.
T Consensus 53 ~~WP~nPvd~iI~~l~~~------~~~~viaD~GCGdA~la~~~-~~~~~V~SfDLva-----------~n~-------- 106 (219)
T PF05148_consen 53 KKWPVNPVDVIIEWLKKR------PKSLVIADFGCGDAKLAKAV-PNKHKVHSFDLVA-----------PNP-------- 106 (219)
T ss_dssp CTSSS-HHHHHHHHHCTS-------TTS-EEEES-TT-HHHHH---S---EEEEESS------------SST--------
T ss_pred hcCCCCcHHHHHHHHHhc------CCCEEEEECCCchHHHHHhc-ccCceEEEeeccC-----------CCC--------
Confidence 456653 2455565432 35679999999999776332 2345788888862 121
Q ss_pred eEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcceeeceEE
Q 019839 175 VHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLVNMVL 254 (335)
Q Consensus 175 v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~~~~p~i 254 (335)
.|...|-.+.+. ..+..|++|.+=.+--.... .++....|+|+++| .
T Consensus 107 -~Vtacdia~vPL-----------------------~~~svDv~VfcLSLMGTn~~-~fi~EA~RvLK~~G--------~ 153 (219)
T PF05148_consen 107 -RVTACDIANVPL-----------------------EDESVDVAVFCLSLMGTNWP-DFIREANRVLKPGG--------I 153 (219)
T ss_dssp -TEEES-TTS-S-------------------------TT-EEEEEEES---SS-HH-HHHHHHHHHEEEEE--------E
T ss_pred -CEEEecCccCcC-----------------------CCCceeEEEEEhhhhCCCcH-HHHHHHHheeccCc--------E
Confidence 233344333211 23589999988777655544 47889999999987 4
Q ss_pred EEEEeeeccccccchhhhhhhhhHHHHHHhhhhcccccccccCCCeeeEEecCC
Q 019839 255 YLALEKRYNFSLNDLDVVANGYSHFRSYIMEEGEHRRFERESFPAFVGKCIDLN 308 (335)
Q Consensus 255 ~ia~~~R~~ft~~~~d~v~~~~~~f~~~l~~~~~~~~~~~~~~~~f~v~~i~~~ 308 (335)
+...|.+..|+ ..+.|.+.+.. -||.+...+.+
T Consensus 154 L~IAEV~SRf~---------~~~~F~~~~~~------------~GF~~~~~d~~ 186 (219)
T PF05148_consen 154 LKIAEVKSRFE---------NVKQFIKALKK------------LGFKLKSKDES 186 (219)
T ss_dssp EEEEEEGGG-S----------HHHHHHHHHC------------TTEEEEEEE--
T ss_pred EEEEEecccCc---------CHHHHHHHHHH------------CCCeEEecccC
Confidence 44456666653 24667776642 47777765543
No 235
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.63 E-value=0.77 Score=41.02 Aligned_cols=172 Identities=17% Similarity=0.238 Sum_probs=95.8
Q ss_pred cceeehhH-HHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh-C-CEEEEecCchHHHHHH-HHHHHHccCCCC
Q 019839 95 GLQVWKAE-LVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV-A-WTVFLTDHGNYILDNC-AKNVQLNSGVFS 170 (335)
Q Consensus 95 G~~vW~aa-~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~-~-~~V~~TD~~~~~l~~~-~~Nv~~N~~~~~ 170 (335)
-.++|+.- --||.-|+..+..-+.-.|.+||=|||-+|.+-=-.+.. + ..|++.+.++.+..-+ .---++++
T Consensus 50 eYR~Wnp~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~N---- 125 (231)
T COG1889 50 EYREWNPRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPN---- 125 (231)
T ss_pred ceeeeCcchhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCC----
Confidence 47999872 234444444332235568999999999999554444433 4 5799999998655333 22222222
Q ss_pred CCCeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcceee
Q 019839 171 HQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLV 250 (335)
Q Consensus 171 ~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~~~ 250 (335)
+--.--|-..+ .+|. ..-++.|+|.. ||- .+.+.+-+......+|+++|.
T Consensus 126 ----i~PIL~DA~~P--------------~~Y~------~~Ve~VDviy~-DVA-Qp~Qa~I~~~Na~~FLk~~G~---- 175 (231)
T COG1889 126 ----IIPILEDARKP--------------EKYR------HLVEKVDVIYQ-DVA-QPNQAEILADNAEFFLKKGGY---- 175 (231)
T ss_pred ----ceeeecccCCc--------------HHhh------hhcccccEEEE-ecC-CchHHHHHHHHHHHhcccCCe----
Confidence 21111111111 0000 01224444443 111 246778888999999999884
Q ss_pred ceEEEEEEeeeccccccchhhhhhhhhHHHHHHhhhhcccccccccCCCeee-EEecCCCCCccccccCCCCceEE
Q 019839 251 NMVLYLALEKRYNFSLNDLDVVANGYSHFRSYIMEEGEHRRFERESFPAFVG-KCIDLNEFPQYVREYDRGNDVEL 325 (335)
Q Consensus 251 ~p~i~ia~~~R~~ft~~~~d~v~~~~~~f~~~l~~~~~~~~~~~~~~~~f~v-~~i~~~~~pq~~~~yer~~~lel 325 (335)
++++.+-|.- |++++.-.-|.+.+.... . .+|++ +.+++. +|++.-.+.+
T Consensus 176 ---~~i~iKArSI------dvT~dp~~vf~~ev~kL~-~--------~~f~i~e~~~Le-------Pye~DH~~i~ 226 (231)
T COG1889 176 ---VVIAIKARSI------DVTADPEEVFKDEVEKLE-E--------GGFEILEVVDLE-------PYEKDHALIV 226 (231)
T ss_pred ---EEEEEEeecc------cccCCHHHHHHHHHHHHH-h--------cCceeeEEeccC-------CcccceEEEE
Confidence 6678888865 566666667877665432 1 23444 445554 6777554444
No 236
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.41 E-value=0.16 Score=46.05 Aligned_cols=104 Identities=15% Similarity=0.135 Sum_probs=71.6
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCC
Q 019839 118 DFNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGN 194 (335)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~ 194 (335)
.++.+++||||.=||..+|+.|.. +.+|++.|++++..+...+-++..+. ..++.+...+-.+......
T Consensus 71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv----~~KI~~i~g~a~esLd~l~---- 142 (237)
T KOG1663|consen 71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGV----DHKITFIEGPALESLDELL---- 142 (237)
T ss_pred HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccc----cceeeeeecchhhhHHHHH----
Confidence 478899999999999999988877 67999999999888888776666553 3566666654333211100
Q ss_pred CCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCC
Q 019839 195 SSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGS 245 (335)
Q Consensus 195 ~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~ 245 (335)
. -...+.||+++.= .+....-.....+-+|+++||
T Consensus 143 -----~--------~~~~~tfDfaFvD---adK~nY~~y~e~~l~Llr~GG 177 (237)
T KOG1663|consen 143 -----A--------DGESGTFDFAFVD---ADKDNYSNYYERLLRLLRVGG 177 (237)
T ss_pred -----h--------cCCCCceeEEEEc---cchHHHHHHHHHHHhhccccc
Confidence 0 0124689998861 122334467777888999887
No 237
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=95.39 E-value=0.22 Score=48.58 Aligned_cols=112 Identities=16% Similarity=0.109 Sum_probs=78.3
Q ss_pred HHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCC----------------------------------------
Q 019839 104 VLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAW---------------------------------------- 143 (335)
Q Consensus 104 ~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~---------------------------------------- 143 (335)
.||.-|+.. .....+..++|-=||+|.+.|-+|..+.
T Consensus 178 tLAaAil~l---agw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~ 254 (381)
T COG0116 178 TLAAAILLL---AGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKEL 254 (381)
T ss_pred HHHHHHHHH---cCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCcc
Confidence 344444433 2445567899999999999999998874
Q ss_pred -EEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEec
Q 019839 144 -TVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAAD 222 (335)
Q Consensus 144 -~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasD 222 (335)
.+++.|+++.+++.++.|++..+. ...|.+...|-.+..++ .+.+|+||+.-
T Consensus 255 ~~~~G~Did~r~i~~Ak~NA~~AGv----~d~I~f~~~d~~~l~~~-----------------------~~~~gvvI~NP 307 (381)
T COG0116 255 PIIYGSDIDPRHIEGAKANARAAGV----GDLIEFKQADATDLKEP-----------------------LEEYGVVISNP 307 (381)
T ss_pred ceEEEecCCHHHHHHHHHHHHhcCC----CceEEEEEcchhhCCCC-----------------------CCcCCEEEeCC
Confidence 377999999999999999998775 46788888887665221 14788888843
Q ss_pred cccC----c----ccHHHHHHHHHHhccCCC
Q 019839 223 VIYS----D----DLTDALFHTLKRLMPLGS 245 (335)
Q Consensus 223 viY~----~----~~~~~L~~tl~~lL~~~~ 245 (335)
..=. . .+...|.+++++.++.-+
T Consensus 308 PYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws 338 (381)
T COG0116 308 PYGERLGSEALVAKLYREFGRTLKRLLAGWS 338 (381)
T ss_pred CcchhcCChhhHHHHHHHHHHHHHHHhcCCc
Confidence 2211 1 145566667777776443
No 238
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=95.06 E-value=0.28 Score=45.34 Aligned_cols=113 Identities=20% Similarity=0.227 Sum_probs=70.7
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCccc
Q 019839 120 NGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQ 199 (335)
Q Consensus 120 ~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~ 199 (335)
....|-|+|||-+-++. ..-..|+.-|+.+ .| -.|...|..+..
T Consensus 180 ~~~vIaD~GCGEakiA~---~~~~kV~SfDL~a-----------~~---------~~V~~cDm~~vP------------- 223 (325)
T KOG3045|consen 180 KNIVIADFGCGEAKIAS---SERHKVHSFDLVA-----------VN---------ERVIACDMRNVP------------- 223 (325)
T ss_pred CceEEEecccchhhhhh---ccccceeeeeeec-----------CC---------CceeeccccCCc-------------
Confidence 45689999999885433 3345788888862 22 233334433321
Q ss_pred cccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcceeeceEEEEEEeeeccccccchhhhhhhhhHH
Q 019839 200 ERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLVNMVLYLALEKRYNFSLNDLDVVANGYSHF 279 (335)
Q Consensus 200 ~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~~~~p~i~ia~~~R~~ft~~~~d~v~~~~~~f 279 (335)
..+++.|+++.+=.+.-.... .++....++|+++| . +||| +.+..|+- -..|
T Consensus 224 ----------l~d~svDvaV~CLSLMgtn~~-df~kEa~RiLk~gG--~-----l~IA-Ev~SRf~d---------v~~f 275 (325)
T KOG3045|consen 224 ----------LEDESVDVAVFCLSLMGTNLA-DFIKEANRILKPGG--L-----LYIA-EVKSRFSD---------VKGF 275 (325)
T ss_pred ----------CccCcccEEEeeHhhhcccHH-HHHHHHHHHhccCc--e-----EEEE-ehhhhccc---------HHHH
Confidence 134589999887666655544 47899999999988 3 6665 44444421 2336
Q ss_pred HHHHhhhhcccccccccCCCeeeEEecCC
Q 019839 280 RSYIMEEGEHRRFERESFPAFVGKCIDLN 308 (335)
Q Consensus 280 ~~~l~~~~~~~~~~~~~~~~f~v~~i~~~ 308 (335)
.+.+.. .||.++..++.
T Consensus 276 ~r~l~~------------lGF~~~~~d~~ 292 (325)
T KOG3045|consen 276 VRALTK------------LGFDVKHKDVS 292 (325)
T ss_pred HHHHHH------------cCCeeeehhhh
Confidence 776653 46777776654
No 239
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=95.05 E-value=0.16 Score=46.30 Aligned_cols=45 Identities=16% Similarity=0.089 Sum_probs=36.4
Q ss_pred CeEEEEcCccCHHHHHHHHhC--CEEEEecCchHHHHHHHHHHHHcc
Q 019839 122 IISLELGAGTGLAGILLSRVA--WTVFLTDHGNYILDNCAKNVQLNS 166 (335)
Q Consensus 122 ~~VLELG~GtGL~gl~la~~~--~~V~~TD~~~~~l~~~~~Nv~~N~ 166 (335)
..+||||||.|-.-+.+|+.. ..+++.++....+..+...+...+
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~ 96 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELG 96 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcC
Confidence 589999999998888888884 679999999877777766665544
No 240
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=95.00 E-value=0.15 Score=45.97 Aligned_cols=61 Identities=18% Similarity=0.128 Sum_probs=52.2
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhC--CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCC
Q 019839 119 FNGIISLELGAGTGLAGILLSRVA--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWM 183 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~la~~~--~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~ 183 (335)
-++.++.|+||--|.+.+.+-+.+ ..+++.|+++..++.+.+|+..|.. ..++.++..|=.
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l----~~~i~vr~~dgl 77 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNL----SERIDVRLGDGL 77 (226)
T ss_pred HcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCC----cceEEEeccCCc
Confidence 355679999999999999999884 6899999999999999999999876 467888877743
No 241
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=94.77 E-value=0.038 Score=54.11 Aligned_cols=86 Identities=13% Similarity=0.132 Sum_probs=66.3
Q ss_pred CCccceeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCC
Q 019839 92 PSVGLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSH 171 (335)
Q Consensus 92 ~~~G~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~ 171 (335)
.+.|..-|++-+..-+--+.. -.-.|..|.|+=||.|-.++.+++.+.+|++-|.++++++.++.|+..|...
T Consensus 225 ~DfskVYWnsRL~~Eherlsg----~fk~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNpesik~Lk~ni~lNkv~--- 297 (495)
T KOG2078|consen 225 FDFSKVYWNSRLSHEHERLSG----LFKPGEVVCDVFAGVGPFALPAAKKGCRVYANDLNPESIKWLKANIKLNKVD--- 297 (495)
T ss_pred EecceEEeeccchhHHHHHhh----ccCCcchhhhhhcCcCccccchhhcCcEEEecCCCHHHHHHHHHhccccccc---
Confidence 356677799655544444332 2235778999999999999999999999999999999999999999999864
Q ss_pred CCeeEEEeccCCC
Q 019839 172 QGSVHVRDLNWMN 184 (335)
Q Consensus 172 ~~~v~v~~ldW~~ 184 (335)
..++.+..+|-.+
T Consensus 298 ~~~iei~Nmda~~ 310 (495)
T KOG2078|consen 298 PSAIEIFNMDAKD 310 (495)
T ss_pred hhheeeecccHHH
Confidence 3447777666433
No 242
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=94.72 E-value=0.48 Score=42.70 Aligned_cols=106 Identities=12% Similarity=0.069 Sum_probs=69.4
Q ss_pred ehhHHHHHHHHHhhcCCCCC-CCCCeEEEEcCccCHHHHHHHHhC-CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeE
Q 019839 99 WKAELVLADFVMHKMCTSSD-FNGIISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVH 176 (335)
Q Consensus 99 W~aa~~La~~l~~~~~~~~~-~~g~~VLELG~GtGL~gl~la~~~-~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~ 176 (335)
-+++.+|.+||......... -...++||+||=..-.. ++..+ -.|+..|+++ ..-.
T Consensus 29 GdSSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~--~s~~~~fdvt~IDLns--------------------~~~~ 86 (219)
T PF11968_consen 29 GDSSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNA--CSTSGWFDVTRIDLNS--------------------QHPG 86 (219)
T ss_pred CchhHHHHHHhhhhccccccccccceEEeecccCCCCc--ccccCceeeEEeecCC--------------------CCCC
Confidence 36899999999876421111 12369999999743221 22222 3699999873 2345
Q ss_pred EEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCccc---HHHHHHHHHHhccCCCc
Q 019839 177 VRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDL---TDALFHTLKRLMPLGSK 246 (335)
Q Consensus 177 v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~---~~~L~~tl~~lL~~~~~ 246 (335)
+.+-||.+...+. .+.++||+|.+|=|+=..+. --.+++-..++|+++|.
T Consensus 87 I~qqDFm~rplp~--------------------~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~ 139 (219)
T PF11968_consen 87 ILQQDFMERPLPK--------------------NESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGL 139 (219)
T ss_pred ceeeccccCCCCC--------------------CcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCc
Confidence 6677777753321 13458999999999966543 34577888889998887
No 243
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=94.64 E-value=0.23 Score=46.50 Aligned_cols=98 Identities=13% Similarity=0.128 Sum_probs=57.5
Q ss_pred CCeEEEEcCc-cCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHH-ccCCCCCCCeeEEEeccCCCCCCCCccCCCC
Q 019839 121 GIISLELGAG-TGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQL-NSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS 195 (335)
Q Consensus 121 g~~VLELG~G-tGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~-N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~ 195 (335)
.++|+=|||| .-+++|.+++. +..|++.|+++++.+..++=+.. .+. ..++.+...|-.+.
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L----~~~m~f~~~d~~~~---------- 186 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGL----SKRMSFITADVLDV---------- 186 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-----SSEEEEES-GGGG----------
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccc----cCCeEEEecchhcc----------
Confidence 3599999999 68999999976 46799999999999988876662 221 35677776664332
Q ss_pred CccccccccCcchhhccCCccEEEEecccc-CcccHHHHHHHHHHhccCCC
Q 019839 196 SASQERYSWNSSELKEVQRASVLLAADVIY-SDDLTDALFHTLKRLMPLGS 245 (335)
Q Consensus 196 ~~~~~~~~w~~~~~~~~~~fDlIlasDviY-~~~~~~~L~~tl~~lL~~~~ 245 (335)
......||+|+-|-.+. +.+.-..++.-|.+.|++|.
T Consensus 187 -------------~~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga 224 (276)
T PF03059_consen 187 -------------TYDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGA 224 (276)
T ss_dssp --------------GG----SEEEE-TT-S----SHHHHHHHHHHHS-TTS
T ss_pred -------------ccccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCc
Confidence 11245899888777776 45667789999999999876
No 244
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=94.60 E-value=0.53 Score=44.29 Aligned_cols=103 Identities=9% Similarity=-0.013 Sum_probs=72.3
Q ss_pred CCCeEEEEcCccCHHHHHHHH-h-C--CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCC
Q 019839 120 NGIISLELGAGTGLAGILLSR-V-A--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS 195 (335)
Q Consensus 120 ~g~~VLELG~GtGL~gl~la~-~-~--~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~ 195 (335)
+..+|||+-||.|--=+-+.. . . .+|.+-|+++..++.-+.-++.++. ...+++...|-.+...-
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL----~~i~~f~~~dAfd~~~l------- 203 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGL----EDIARFEQGDAFDRDSL------- 203 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCC----ccceEEEecCCCCHhHh-------
Confidence 456999999999944332222 2 2 5899999999999999999988875 34458888886654110
Q ss_pred CccccccccCcchhhccCCccEEEEeccccCccc---HHHHHHHHHHhccCCCc
Q 019839 196 SASQERYSWNSSELKEVQRASVLLAADVIYSDDL---TDALFHTLKRLMPLGSK 246 (335)
Q Consensus 196 ~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~---~~~L~~tl~~lL~~~~~ 246 (335)
......++++|.|-++-..++ ....++-+..++.|+|.
T Consensus 204 -------------~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~ 244 (311)
T PF12147_consen 204 -------------AALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGY 244 (311)
T ss_pred -------------hccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcE
Confidence 112346899999988765544 45566777788888773
No 245
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=94.15 E-value=0.16 Score=47.85 Aligned_cols=75 Identities=16% Similarity=0.061 Sum_probs=57.5
Q ss_pred ccceeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh-C--CEEEEecCchHHHHHHHHHHHHccCCCC
Q 019839 94 VGLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV-A--WTVFLTDHGNYILDNCAKNVQLNSGVFS 170 (335)
Q Consensus 94 ~G~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~-~--~~V~~TD~~~~~l~~~~~Nv~~N~~~~~ 170 (335)
.-..+++.+-.++-.++.. ..|.+|||+.||.|-=+..+|.. . ..|++.|+++.=+..++.|+.+.+
T Consensus 65 G~~~vQd~sS~l~~~~L~~------~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g---- 134 (283)
T PF01189_consen 65 GLFYVQDESSQLVALALDP------QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLG---- 134 (283)
T ss_dssp TSEEEHHHHHHHHHHHHTT------TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT----
T ss_pred CcEEecccccccccccccc------cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcC----
Confidence 3467788777777666543 57889999999999777666665 2 599999999999999999998876
Q ss_pred CCCeeEEEe
Q 019839 171 HQGSVHVRD 179 (335)
Q Consensus 171 ~~~~v~v~~ 179 (335)
..++.+..
T Consensus 135 -~~~v~~~~ 142 (283)
T PF01189_consen 135 -VFNVIVIN 142 (283)
T ss_dssp --SSEEEEE
T ss_pred -CceEEEEe
Confidence 34555554
No 246
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=93.93 E-value=0.42 Score=48.75 Aligned_cols=100 Identities=11% Similarity=-0.048 Sum_probs=62.0
Q ss_pred CCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839 120 NGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA 197 (335)
Q Consensus 120 ~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~ 197 (335)
.+..+||+|||.|-.-+.+|+. -..+++.|+....+..+.+.+...+ ..++.+...+......
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~-----l~N~~~~~~~~~~~~~---------- 411 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQN-----ITNFLLFPNNLDLILN---------- 411 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcC-----CCeEEEEcCCHHHHHH----------
Confidence 4678999999999888888877 3689999999876666655555443 2455554443211100
Q ss_pred cccccccCcchhhccCCccEEEE--eccccCcc------cHHHHHHHHHHhccCCC
Q 019839 198 SQERYSWNSSELKEVQRASVLLA--ADVIYSDD------LTDALFHTLKRLMPLGS 245 (335)
Q Consensus 198 ~~~~~~w~~~~~~~~~~fDlIla--sDviY~~~------~~~~L~~tl~~lL~~~~ 245 (335)
.-...++|-|.. .|--.-.. ....+++.+.++|++||
T Consensus 412 -----------~~~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG 456 (506)
T PRK01544 412 -----------DLPNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNG 456 (506)
T ss_pred -----------hcCcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCC
Confidence 001123444443 22221111 35789999999999987
No 247
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=93.76 E-value=0.8 Score=42.68 Aligned_cols=61 Identities=15% Similarity=0.178 Sum_probs=47.1
Q ss_pred CCCCCCeEEEEcCccCHHHHHHHHhC---CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEecc
Q 019839 117 SDFNGIISLELGAGTGLAGILLSRVA---WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLN 181 (335)
Q Consensus 117 ~~~~g~~VLELG~GtGL~gl~la~~~---~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ld 181 (335)
....|.+|||-|.|.|-.|.++|+.- .+++--|++..-.+.+.+-.+..+. ..++++..=|
T Consensus 102 ~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi----~~~vt~~hrD 165 (314)
T KOG2915|consen 102 EIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGI----GDNVTVTHRD 165 (314)
T ss_pred cCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCC----CcceEEEEee
Confidence 55789999999999999999999983 5899999997666666666666553 4556555544
No 248
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=93.55 E-value=0.3 Score=45.51 Aligned_cols=77 Identities=16% Similarity=0.206 Sum_probs=62.9
Q ss_pred CCCCCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCC
Q 019839 117 SDFNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGN 194 (335)
Q Consensus 117 ~~~~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~ 194 (335)
.++.|+.|+=+| ---|+||++|.- .++|...|+++.+++.+.+-++.-+ ..++.+..+|..++.|..
T Consensus 149 GDL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g-----~~~ie~~~~Dlr~plpe~----- 217 (354)
T COG1568 149 GDLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELG-----YNNIEAFVFDLRNPLPED----- 217 (354)
T ss_pred cCcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhC-----ccchhheeehhcccChHH-----
Confidence 788999999999 677999998877 4799999999999999998887655 356788888887775532
Q ss_pred CCccccccccCcchhhccCCccEEEE
Q 019839 195 SSASQERYSWNSSELKEVQRASVLLA 220 (335)
Q Consensus 195 ~~~~~~~~~w~~~~~~~~~~fDlIla 220 (335)
..++||+++.
T Consensus 218 ----------------~~~kFDvfiT 227 (354)
T COG1568 218 ----------------LKRKFDVFIT 227 (354)
T ss_pred ----------------HHhhCCeeec
Confidence 3468999886
No 249
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=93.55 E-value=0.59 Score=44.79 Aligned_cols=105 Identities=17% Similarity=0.208 Sum_probs=63.5
Q ss_pred CCCeEEEEcCccCH-HHHHHHHh-----CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEE--EeccCCCCCCCCcc
Q 019839 120 NGIISLELGAGTGL-AGILLSRV-----AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHV--RDLNWMNPWPPIFS 191 (335)
Q Consensus 120 ~g~~VLELG~GtGL-~gl~la~~-----~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v--~~ldW~~~~~~~~~ 191 (335)
.+..++|||||.|. +.+.+..+ ..+.+..|++.++|+.+..++..-. .+.+.+ ...|+.+...
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~-----~p~l~v~~l~gdy~~~l~---- 146 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGN-----FSHVRCAGLLGTYDDGLA---- 146 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhcc-----CCCeEEEEEEecHHHHHh----
Confidence 56689999999984 45544433 3579999999999999988887222 233444 3444443311
Q ss_pred CCCCCccccccccCcchhhccCCccEEEEec-cccC--cccHHHHHHHHHH-hccCCCc
Q 019839 192 LGNSSASQERYSWNSSELKEVQRASVLLAAD-VIYS--DDLTDALFHTLKR-LMPLGSK 246 (335)
Q Consensus 192 ~~~~~~~~~~~~w~~~~~~~~~~fDlIlasD-viY~--~~~~~~L~~tl~~-lL~~~~~ 246 (335)
|-.. ........+|+--- .|-+ +.....|++.+++ .|++++.
T Consensus 147 ------------~l~~-~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~ 192 (319)
T TIGR03439 147 ------------WLKR-PENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDS 192 (319)
T ss_pred ------------hccc-ccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCE
Confidence 1000 00012345555432 4544 4556678899999 9988764
No 250
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=93.46 E-value=0.15 Score=44.19 Aligned_cols=50 Identities=26% Similarity=0.274 Sum_probs=39.1
Q ss_pred hhHHHHHHHHHhhcCCCCCC---CCCeEEEEcCccCHHHHHHHHhC---CEEEEecCchH
Q 019839 100 KAELVLADFVMHKMCTSSDF---NGIISLELGAGTGLAGILLSRVA---WTVFLTDHGNY 153 (335)
Q Consensus 100 ~aa~~La~~l~~~~~~~~~~---~g~~VLELG~GtGL~gl~la~~~---~~V~~TD~~~~ 153 (335)
+|+.-|.+-+... ..+ .+.+||||||++|-.+-++...+ .+|++.|+.+.
T Consensus 4 Ra~~KL~ei~~~~----~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 4 RAAFKLYEIDEKF----KIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM 59 (181)
T ss_dssp THHHHHHHHHHTT----SSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred HHHHHHHHHHHHC----CCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence 5777788777655 222 45899999999999999988887 79999999864
No 251
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=93.28 E-value=0.073 Score=51.07 Aligned_cols=107 Identities=17% Similarity=0.204 Sum_probs=63.0
Q ss_pred CCCCCCeEEEEcCccCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCC
Q 019839 117 SDFNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLG 193 (335)
Q Consensus 117 ~~~~g~~VLELG~GtGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~ 193 (335)
+.|..++|||.|+|.|....++-.. -..+++...++ .|..+-.-+..|. .....+|....-...
T Consensus 110 ~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp-~lrkV~~tl~~nv---------~t~~td~r~s~vt~d--- 176 (484)
T COG5459 110 PDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASP-ALRKVGDTLAENV---------STEKTDWRASDVTED--- 176 (484)
T ss_pred CCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCH-HHHHHHHHHHhhc---------ccccCCCCCCccchh---
Confidence 6789999999999998644433333 24677777775 3333334444443 223366665421110
Q ss_pred CCCccccccccCcchhhccCCccEEEEeccccCcccHHH---HHHHHHHhccCCCcce
Q 019839 194 NSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDA---LFHTLKRLMPLGSKKV 248 (335)
Q Consensus 194 ~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~---L~~tl~~lL~~~~~~~ 248 (335)
-..+.....|++||+.|=+-.+....+ .++.+-.++++||..+
T Consensus 177 ------------Rl~lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lV 222 (484)
T COG5459 177 ------------RLSLPAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLV 222 (484)
T ss_pred ------------ccCCCccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEE
Confidence 001223457999999998887765554 4555556677877544
No 252
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=92.98 E-value=0.42 Score=46.30 Aligned_cols=100 Identities=21% Similarity=0.292 Sum_probs=67.1
Q ss_pred CCCeEEEEcCccCHHHHHHHHhC--CEEEEecCchHHHHHHHHHH---HHccCCCCCCCeeEEEecc---CCCCCCCCcc
Q 019839 120 NGIISLELGAGTGLAGILLSRVA--WTVFLTDHGNYILDNCAKNV---QLNSGVFSHQGSVHVRDLN---WMNPWPPIFS 191 (335)
Q Consensus 120 ~g~~VLELG~GtGL~gl~la~~~--~~V~~TD~~~~~l~~~~~Nv---~~N~~~~~~~~~v~v~~ld---W~~~~~~~~~ 191 (335)
.-.+||=||-|-||..-.+.+.- .+|+..|.+|.|++..++|. ..|..... ..++++..-| |-..
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~-dpRv~Vv~dDAf~wlr~------ 361 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFS-DPRVTVVNDDAFQWLRT------ 361 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCcc-CCeeEEEeccHHHHHHh------
Confidence 34589999999999988888884 59999999999999999775 34554433 4566665433 3322
Q ss_pred CCCCCccccccccCcchhhccCCccEEEEeccccCcc-------cHHHHHHHHHHhccCCCcc
Q 019839 192 LGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDD-------LTDALFHTLKRLMPLGSKK 247 (335)
Q Consensus 192 ~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~-------~~~~L~~tl~~lL~~~~~~ 247 (335)
....||+||-- .. ++. .-..|...+++.++++|..
T Consensus 362 -------------------a~~~fD~vIVD-l~-DP~tps~~rlYS~eFY~ll~~~l~e~Gl~ 403 (508)
T COG4262 362 -------------------AADMFDVVIVD-LP-DPSTPSIGRLYSVEFYRLLSRHLAETGLM 403 (508)
T ss_pred -------------------hcccccEEEEe-CC-CCCCcchhhhhhHHHHHHHHHhcCcCceE
Confidence 23478888751 11 111 1234667778888877743
No 253
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.82 E-value=0.17 Score=48.16 Aligned_cols=44 Identities=34% Similarity=0.317 Sum_probs=38.4
Q ss_pred CCCCCCeEEEEcCc-cCHHHHHHHHh--CCEEEEecCchHHHHHHHH
Q 019839 117 SDFNGIISLELGAG-TGLAGILLSRV--AWTVFLTDHGNYILDNCAK 160 (335)
Q Consensus 117 ~~~~g~~VLELG~G-tGL~gl~la~~--~~~V~~TD~~~~~l~~~~~ 160 (335)
..-.|.+||=+||| .||+.+..|+. +++|+++|..+.-|+.+++
T Consensus 166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~ 212 (354)
T KOG0024|consen 166 GVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK 212 (354)
T ss_pred CcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH
Confidence 34578999999999 79999998887 4699999999999998886
No 254
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=92.30 E-value=0.43 Score=39.33 Aligned_cols=44 Identities=20% Similarity=0.172 Sum_probs=30.7
Q ss_pred HHHHHHHhhcCCCCCCCCCeEEEEcCccC-HHHHHHHHhCCEEEEecCchH
Q 019839 104 VLADFVMHKMCTSSDFNGIISLELGAGTG-LAGILLSRVAWTVFLTDHGNY 153 (335)
Q Consensus 104 ~La~~l~~~~~~~~~~~g~~VLELG~GtG-L~gl~la~~~~~V~~TD~~~~ 153 (335)
.+|+|+..+ ....+|+|+|-|-= -++..++..|..|++||+++.
T Consensus 3 ~~a~~ia~~------~~~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~~ 47 (127)
T PF03686_consen 3 DFAEYIARL------NNYGKIVEVGIGFNPEVAKKLKERGFDVIATDINPR 47 (127)
T ss_dssp HHHHHHHHH------S-SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-S
T ss_pred hHHHHHHHh------CCCCcEEEECcCCCHHHHHHHHHcCCcEEEEECccc
Confidence 578999866 23449999999953 667778888999999999964
No 255
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=92.23 E-value=0.79 Score=37.15 Aligned_cols=91 Identities=20% Similarity=0.217 Sum_probs=58.2
Q ss_pred HHHHHHhhcCCCCCCCCCeEEEEcCccC-HHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCC
Q 019839 105 LADFVMHKMCTSSDFNGIISLELGAGTG-LAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWM 183 (335)
Q Consensus 105 La~~l~~~~~~~~~~~g~~VLELG~GtG-L~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~ 183 (335)
+++|+.... -+| +|+|+|.|-= -++-.+++.|..|++||+++. + . ...+.+..=|-.
T Consensus 4 ~a~~iAre~-----~~g-kVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~-------~----a-----~~g~~~v~DDit 61 (129)
T COG1255 4 VAEYIAREN-----ARG-KVVEVGIGFFLDVAKRLAERGFDVLATDINEK-------T----A-----PEGLRFVVDDIT 61 (129)
T ss_pred HHHHHHHHh-----cCC-cEEEEccchHHHHHHHHHHcCCcEEEEecccc-------c----C-----cccceEEEccCC
Confidence 566766431 344 8999998854 455667777999999999864 1 1 122344444433
Q ss_pred CCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCC
Q 019839 184 NPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGS 245 (335)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~ 245 (335)
++ ..-+--++|.+|...-...|.+.|-++.+.=+
T Consensus 62 nP----------------------------~~~iY~~A~lIYSiRpppEl~~~ildva~aVg 95 (129)
T COG1255 62 NP----------------------------NISIYEGADLIYSIRPPPELQSAILDVAKAVG 95 (129)
T ss_pred Cc----------------------------cHHHhhCccceeecCCCHHHHHHHHHHHHhhC
Confidence 33 33455678888887777777777777765433
No 256
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=91.64 E-value=0.1 Score=49.13 Aligned_cols=72 Identities=19% Similarity=0.332 Sum_probs=52.8
Q ss_pred ceeehhHHHHHHH--HHhhcC-CCCCCCCCeEEEEcCccCHHHH-HHHHhC-CEEEEecCchHHHHHHHHHHHHccC
Q 019839 96 LQVWKAELVLADF--VMHKMC-TSSDFNGIISLELGAGTGLAGI-LLSRVA-WTVFLTDHGNYILDNCAKNVQLNSG 167 (335)
Q Consensus 96 ~~vW~aa~~La~~--l~~~~~-~~~~~~g~~VLELG~GtGL~gl-~la~~~-~~V~~TD~~~~~l~~~~~Nv~~N~~ 167 (335)
.+.|++...|=.+ +.+... ..-...|..|.||-||.|...+ .+-++| +.|+|.|.+|..++.+++|++.|+.
T Consensus 167 ~~~~d~t~~MFS~GN~~EK~Rv~~~sc~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V 243 (351)
T KOG1227|consen 167 TQIWDPTKTMFSRGNIKEKKRVLNTSCDGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNV 243 (351)
T ss_pred EEEechhhhhhhcCcHHHHHHhhhcccccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcch
Confidence 5888887665443 111100 0122456889999999998888 566664 6899999999999999999999974
No 257
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=91.35 E-value=0.38 Score=43.77 Aligned_cols=61 Identities=18% Similarity=0.312 Sum_probs=41.1
Q ss_pred HHHHHHHhhcCCCCCC--CCCeEEEEcCccCH-HHH-HHHHhCCEEEEecCchHHHHHHHHHHHHccC
Q 019839 104 VLADFVMHKMCTSSDF--NGIISLELGAGTGL-AGI-LLSRVAWTVFLTDHGNYILDNCAKNVQLNSG 167 (335)
Q Consensus 104 ~La~~l~~~~~~~~~~--~g~~VLELG~GtGL-~gl-~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~ 167 (335)
.|++.|.+.. ... ++.++||+|.|.-. --| -.-..|.+.++||+++..+..++.|+..|..
T Consensus 63 ~laDLL~s~~---g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~ 127 (292)
T COG3129 63 HLADLLASTS---GQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPG 127 (292)
T ss_pred HHHHHHHhcC---CCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcc
Confidence 4555555442 233 45578888777541 111 2223378999999999999999999999953
No 258
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=91.28 E-value=1.3 Score=44.38 Aligned_cols=97 Identities=12% Similarity=0.235 Sum_probs=63.8
Q ss_pred CeEEEEcCccCHHHHHHHHhCC-EEEEecCchHHHHHH-HHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCccc
Q 019839 122 IISLELGAGTGLAGILLSRVAW-TVFLTDHGNYILDNC-AKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQ 199 (335)
Q Consensus 122 ~~VLELG~GtGL~gl~la~~~~-~V~~TD~~~~~l~~~-~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~ 199 (335)
-++|.||||.--...-+-+.|. .|+.+|+++-+++.+ .+|+..+ .-......|-....
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~-------~~~~~~~~d~~~l~------------- 109 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKER-------PEMQMVEMDMDQLV------------- 109 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCC-------cceEEEEecchhcc-------------
Confidence 4899999999887877777774 799999998666544 5554322 23444444433321
Q ss_pred cccccCcchhhccCCccEEEE----------eccccCcccHHHHHHHHHHhccCCCcce
Q 019839 200 ERYSWNSSELKEVQRASVLLA----------ADVIYSDDLTDALFHTLKRLMPLGSKKV 248 (335)
Q Consensus 200 ~~~~w~~~~~~~~~~fDlIla----------sDviY~~~~~~~L~~tl~~lL~~~~~~~ 248 (335)
-+.+.||+||. ++.+++.......+..+.++++++++.+
T Consensus 110 ----------fedESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~ 158 (482)
T KOG2352|consen 110 ----------FEDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYI 158 (482)
T ss_pred ----------CCCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEE
Confidence 12347788776 3344444455667888999999988654
No 259
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=91.01 E-value=0.6 Score=41.22 Aligned_cols=56 Identities=14% Similarity=0.116 Sum_probs=42.6
Q ss_pred hHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHH
Q 019839 101 AELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAK 160 (335)
Q Consensus 101 aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~ 160 (335)
-..-|.+.+.... ..+|..|||-=||+|-+++++.+++.+.++.|++++..+.+++
T Consensus 176 kP~~l~~~lI~~~----t~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 176 KPVELIERLIKAS----TNPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp S-HHHHHHHHHHH----S-TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHHHH
T ss_pred CCHHHHHHHHHhh----hccceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHhcC
Confidence 3556666666652 3578899999999999999999999999999999988887753
No 260
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=90.82 E-value=0.62 Score=45.70 Aligned_cols=96 Identities=17% Similarity=0.134 Sum_probs=62.3
Q ss_pred CCCeEEEEcCccCHHHHHHHHh-C--CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCC
Q 019839 120 NGIISLELGAGTGLAGILLSRV-A--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS 196 (335)
Q Consensus 120 ~g~~VLELG~GtGL~gl~la~~-~--~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~ 196 (335)
.+.+|||-=||+|+=||-.++. + .+|++-|+++.+++.+++|+++|+... .++.+...|-....
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~---~~~~v~~~DAn~ll---------- 115 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLED---ERIEVSNMDANVLL---------- 115 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SG---CCEEEEES-HHHHH----------
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccC---ceEEEehhhHHHHh----------
Confidence 4569999999999999999998 2 689999999999999999999998632 14555544321110
Q ss_pred ccccccccCcchhhccCCccEEEEeccccCc-ccHHHHHHHHHHhccCCC
Q 019839 197 ASQERYSWNSSELKEVQRASVLLAADVIYSD-DLTDALFHTLKRLMPLGS 245 (335)
Q Consensus 197 ~~~~~~~w~~~~~~~~~~fDlIlasDviY~~-~~~~~L~~tl~~lL~~~~ 245 (335)
......||+|=. |+ ....++++..-+.++.+|
T Consensus 116 ------------~~~~~~fD~IDl-----DPfGSp~pfldsA~~~v~~gG 148 (377)
T PF02005_consen 116 ------------YSRQERFDVIDL-----DPFGSPAPFLDSALQAVKDGG 148 (377)
T ss_dssp ------------CHSTT-EEEEEE-------SS--HHHHHHHHHHEEEEE
T ss_pred ------------hhccccCCEEEe-----CCCCCccHhHHHHHHHhhcCC
Confidence 012346777743 22 345577777777777655
No 261
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=90.78 E-value=0.58 Score=45.33 Aligned_cols=46 Identities=28% Similarity=0.273 Sum_probs=42.7
Q ss_pred CCeEEEEcCccCHHHHHHHHh-CC-EEEEecCchHHHHHHHHHHHHcc
Q 019839 121 GIISLELGAGTGLAGILLSRV-AW-TVFLTDHGNYILDNCAKNVQLNS 166 (335)
Q Consensus 121 g~~VLELG~GtGL~gl~la~~-~~-~V~~TD~~~~~l~~~~~Nv~~N~ 166 (335)
.++|+|-=||||+=||-.|.. +. +|++-|++|.+.+.++.|+.+|.
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~ 100 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNS 100 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcC
Confidence 789999999999999999988 34 79999999999999999999994
No 262
>PRK11524 putative methyltransferase; Provisional
Probab=90.38 E-value=1 Score=42.20 Aligned_cols=58 Identities=14% Similarity=0.076 Sum_probs=49.3
Q ss_pred HHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHH
Q 019839 103 LVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQL 164 (335)
Q Consensus 103 ~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~ 164 (335)
.-|.+.+... ...+|..|||-=||+|-+++++.++|.+.++.|++++..+.+++.+..
T Consensus 195 ~~L~erlI~~----~S~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 195 EALLKRIILA----SSNPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHHHH----hCCCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHh
Confidence 4566665554 347899999999999999999999999999999999999999888754
No 263
>KOG2730 consensus Methylase [General function prediction only]
Probab=89.90 E-value=0.55 Score=42.48 Aligned_cols=74 Identities=12% Similarity=0.062 Sum_probs=60.6
Q ss_pred HHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEecc
Q 019839 102 ELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLN 181 (335)
Q Consensus 102 a~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ld 181 (335)
|..+|..+... ..-..|++-=||.|--.+..|..+..|++.|++|.-+..++.|++.-+. ..++.+...|
T Consensus 82 a~~iA~~v~~~------~~~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaeiYGI----~~rItFI~GD 151 (263)
T KOG2730|consen 82 AEHIANRVVAC------MNAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVYGV----PDRITFICGD 151 (263)
T ss_pred HHHHHHHHHHh------cCcchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhccceeecC----CceeEEEech
Confidence 44555555433 2455799999999988999999999999999999999999999998875 4689999999
Q ss_pred CCCC
Q 019839 182 WMNP 185 (335)
Q Consensus 182 W~~~ 185 (335)
|.+.
T Consensus 152 ~ld~ 155 (263)
T KOG2730|consen 152 FLDL 155 (263)
T ss_pred HHHH
Confidence 9875
No 264
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=89.50 E-value=1.1 Score=43.85 Aligned_cols=102 Identities=15% Similarity=0.126 Sum_probs=69.3
Q ss_pred CCCCCCeEEEEcCccCHHHHHHHHh-CCEEEEecCchHHHHHH-HHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCC
Q 019839 117 SDFNGIISLELGAGTGLAGILLSRV-AWTVFLTDHGNYILDNC-AKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGN 194 (335)
Q Consensus 117 ~~~~g~~VLELG~GtGL~gl~la~~-~~~V~~TD~~~~~l~~~-~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~ 194 (335)
..+.+..++++|||.|-+....+.. +..++..|+++.-+... ..++..+-. .+..+ ..-|.-..+
T Consensus 107 ~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~-----~k~~~-~~~~~~~~~------- 173 (364)
T KOG1269|consen 107 SCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLD-----NKCNF-VVADFGKMP------- 173 (364)
T ss_pred cCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhh-----hhcce-ehhhhhcCC-------
Confidence 3456678999999999888888877 47899999997433222 222222211 11122 222222111
Q ss_pred CCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCc
Q 019839 195 SSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSK 246 (335)
Q Consensus 195 ~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~ 246 (335)
.+...||.+-+.|+.-+.+....+++.+.+.++|||.
T Consensus 174 ---------------fedn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~ 210 (364)
T KOG1269|consen 174 ---------------FEDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGL 210 (364)
T ss_pred ---------------CCccccCcEEEEeecccCCcHHHHHHHHhcccCCCce
Confidence 1345899999999999999999999999999999884
No 265
>PRK13699 putative methylase; Provisional
Probab=89.36 E-value=1.6 Score=39.61 Aligned_cols=58 Identities=9% Similarity=-0.014 Sum_probs=47.4
Q ss_pred HHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHH
Q 019839 103 LVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQL 164 (335)
Q Consensus 103 ~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~ 164 (335)
.-|.+.+... ...+|..|||-=||+|-+++++.+.|.+.++.|++++..+.+.+.++.
T Consensus 150 ~~l~~~~i~~----~s~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 150 VTSLQPLIES----FTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred HHHHHHHHHH----hCCCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHH
Confidence 4455555544 235788999999999999999999999999999999888888777754
No 266
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=89.24 E-value=0.57 Score=37.52 Aligned_cols=32 Identities=22% Similarity=0.241 Sum_probs=27.4
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCEEEEecCc
Q 019839 120 NGIISLELGAGTGLAGILLSRVAWTVFLTDHG 151 (335)
Q Consensus 120 ~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~ 151 (335)
+-..-+|||||.||+--++.+.|..=.+.|.-
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~R 89 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGYPGWGIDAR 89 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCCCccccccc
Confidence 34579999999999999999999888888875
No 267
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=88.91 E-value=1.7 Score=41.85 Aligned_cols=94 Identities=15% Similarity=0.171 Sum_probs=63.4
Q ss_pred CeEEEEcCccC-HHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcccc
Q 019839 122 IISLELGAGTG-LAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQE 200 (335)
Q Consensus 122 ~~VLELG~GtG-L~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~ 200 (335)
...+|+|+|+| +++.++. .-.+|-+++.+..-+...+.+.. - .|.-...|...+.
T Consensus 179 ~~avDvGgGiG~v~k~ll~-~fp~ik~infdlp~v~~~a~~~~-~--------gV~~v~gdmfq~~-------------- 234 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLS-KYPHIKGINFDLPFVLAAAPYLA-P--------GVEHVAGDMFQDT-------------- 234 (342)
T ss_pred ceEEEcCCcHhHHHHHHHH-hCCCCceeecCHHHHHhhhhhhc-C--------CcceecccccccC--------------
Confidence 67999999999 5556666 55568888887544444444432 1 1333344444332
Q ss_pred ccccCcchhhccCCccEEEEeccccC--cccHHHHHHHHHHhccCCCcceeec
Q 019839 201 RYSWNSSELKEVQRASVLLAADVIYS--DDLTDALFHTLKRLMPLGSKKVLVN 251 (335)
Q Consensus 201 ~~~w~~~~~~~~~~fDlIlasDviY~--~~~~~~L~~tl~~lL~~~~~~~~~~ 251 (335)
.+-|+|+.-=|++| +++.-.+++-+.+.|+++|+.++++
T Consensus 235 ------------P~~daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E 275 (342)
T KOG3178|consen 235 ------------PKGDAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVE 275 (342)
T ss_pred ------------CCcCeEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEe
Confidence 25679999999988 5677789999999999988766444
No 268
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=88.75 E-value=2 Score=39.61 Aligned_cols=134 Identities=9% Similarity=-0.001 Sum_probs=73.7
Q ss_pred CCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcc
Q 019839 121 GIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS 198 (335)
Q Consensus 121 g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~ 198 (335)
..+|+|||||.==+++..... +..+++.|++..+++.+.+=+..-+ ....+...|-....
T Consensus 106 p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~------~~~~~~v~Dl~~~~------------ 167 (251)
T PF07091_consen 106 PDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLG------VPHDARVRDLLSDP------------ 167 (251)
T ss_dssp -SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-------CEEEEEE-TTTSH------------
T ss_pred CchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhC------CCcceeEeeeeccC------------
Confidence 579999999988767665544 4699999999999999987766543 23444444444331
Q ss_pred ccccccCcchhhccCCccEEEEeccccCccc--HHHHHHHHHHhccCCCcceeeceEEEEEEeeeccccccchhhhhhhh
Q 019839 199 QERYSWNSSELKEVQRASVLLAADVIYSDDL--TDALFHTLKRLMPLGSKKVLVNMVLYLALEKRYNFSLNDLDVVANGY 276 (335)
Q Consensus 199 ~~~~~w~~~~~~~~~~fDlIlasDviY~~~~--~~~L~~tl~~lL~~~~~~~~~~p~i~ia~~~R~~ft~~~~d~v~~~~ 276 (335)
.....|+.+.-=++.--+. ....++.|..+=. |.+.|++.+|.--. - -.+++
T Consensus 168 ------------~~~~~DlaLllK~lp~le~q~~g~g~~ll~~~~~---------~~~vVSfPtrSL~g---R--~~gm~ 221 (251)
T PF07091_consen 168 ------------PKEPADLALLLKTLPCLERQRRGAGLELLDALRS---------PHVVVSFPTRSLGG---R--NKGME 221 (251)
T ss_dssp ------------TTSEESEEEEET-HHHHHHHSTTHHHHHHHHSCE---------SEEEEEEES------------TTHH
T ss_pred ------------CCCCcchhhHHHHHHHHHHHhcchHHHHHHHhCC---------CeEEEecccccccc---C--ccccc
Confidence 1236888887544432221 1222333333321 22778887774311 0 12456
Q ss_pred hHHHHHHhhhhcccccccccCCCeeeEEec
Q 019839 277 SHFRSYIMEEGEHRRFERESFPAFVGKCID 306 (335)
Q Consensus 277 ~~f~~~l~~~~~~~~~~~~~~~~f~v~~i~ 306 (335)
..|+.+++..- ...+|.+.++.
T Consensus 222 ~~y~~~fe~~~--------~~~~~~~~~~~ 243 (251)
T PF07091_consen 222 QTYSAWFEALA--------AERGWIVDRLT 243 (251)
T ss_dssp HCHHHHHHHHC--------CTTCEEEEEEE
T ss_pred cCHHHHHHHhc--------ccCCceeeeee
Confidence 66777775421 12468777754
No 269
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=88.43 E-value=0.18 Score=39.52 Aligned_cols=94 Identities=13% Similarity=0.057 Sum_probs=29.5
Q ss_pred EEEcCccCHHHHHHHHh---C--CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCccc
Q 019839 125 LELGAGTGLAGILLSRV---A--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQ 199 (335)
Q Consensus 125 LELG~GtGL~gl~la~~---~--~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~ 199 (335)
||+|+..|..++.+++. . .++++.|..+. .+..+++++.... ..++++...+-.+..+
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~----~~~~~~~~g~s~~~l~------------ 63 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGL----SDRVEFIQGDSPDFLP------------ 63 (106)
T ss_dssp --------------------------EEEESS-------------GGG-----BTEEEEES-THHHHH------------
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCC----CCeEEEEEcCcHHHHH------------
Confidence 79999999888777765 2 37999999975 3333333332221 2446665554322100
Q ss_pred cccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCC
Q 019839 200 ERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGS 245 (335)
Q Consensus 200 ~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~ 245 (335)
.. ..+++|+|+. |.-+..+....-+..+...|++++
T Consensus 64 --------~~-~~~~~dli~i-Dg~H~~~~~~~dl~~~~~~l~~gg 99 (106)
T PF13578_consen 64 --------SL-PDGPIDLIFI-DGDHSYEAVLRDLENALPRLAPGG 99 (106)
T ss_dssp --------HH-HH--EEEEEE-ES---HHHHHHHHHHHGGGEEEEE
T ss_pred --------Hc-CCCCEEEEEE-CCCCCHHHHHHHHHHHHHHcCCCe
Confidence 01 1358888876 333333444555666666777655
No 270
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=87.99 E-value=2 Score=41.67 Aligned_cols=62 Identities=15% Similarity=0.177 Sum_probs=39.7
Q ss_pred HHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh----------CCEEEEecCchHHHHHHHHHHH
Q 019839 102 ELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV----------AWTVFLTDHGNYILDNCAKNVQ 163 (335)
Q Consensus 102 a~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~----------~~~V~~TD~~~~~l~~~~~Nv~ 163 (335)
+.++|.|+.+....-.....-.++|||+|.|...--+.+. +.++.+.+.++.+...=+.+++
T Consensus 59 Gella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~ 130 (370)
T COG1565 59 GELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLK 130 (370)
T ss_pred HHHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHh
Confidence 4567888776531112223458999999999766443332 3589999999766555454444
No 271
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=87.35 E-value=1 Score=45.93 Aligned_cols=43 Identities=23% Similarity=0.193 Sum_probs=37.1
Q ss_pred CCCCCeEEEEcCc-cCHHHHHHHHh-CCEEEEecCchHHHHHHHH
Q 019839 118 DFNGIISLELGAG-TGLAGILLSRV-AWTVFLTDHGNYILDNCAK 160 (335)
Q Consensus 118 ~~~g~~VLELG~G-tGL~gl~la~~-~~~V~~TD~~~~~l~~~~~ 160 (335)
...+.+|+=+||| .|+..+.+|+. |+.|+++|.+++-++.++.
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aes 206 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVES 206 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 3578999999999 69999888877 8899999999988887764
No 272
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=85.76 E-value=1.6 Score=40.72 Aligned_cols=40 Identities=18% Similarity=0.179 Sum_probs=35.3
Q ss_pred eEEEEcCccCHHHHHHHHhCC-EEEEecCchHHHHHHHHHH
Q 019839 123 ISLELGAGTGLAGILLSRVAW-TVFLTDHGNYILDNCAKNV 162 (335)
Q Consensus 123 ~VLELG~GtGL~gl~la~~~~-~V~~TD~~~~~l~~~~~Nv 162 (335)
+|+||-||.|-.++.+...|. .|++.|+++.+++..+.|.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~ 42 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANF 42 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhC
Confidence 699999999999888888876 4788999999999888886
No 273
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=85.60 E-value=2.2 Score=39.01 Aligned_cols=83 Identities=12% Similarity=0.138 Sum_probs=43.6
Q ss_pred eEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHH---HHHHccCCCC-CCCeeEEEeccCCCCCCCCccCCCCCcc
Q 019839 123 ISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAK---NVQLNSGVFS-HQGSVHVRDLNWMNPWPPIFSLGNSSAS 198 (335)
Q Consensus 123 ~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~---Nv~~N~~~~~-~~~~v~v~~ldW~~~~~~~~~~~~~~~~ 198 (335)
+|||.=||.|-=++++|..|.+|++.+.+|-+-.+++. +...+..... ...++++...|-.+...
T Consensus 78 ~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~----------- 146 (234)
T PF04445_consen 78 SVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLR----------- 146 (234)
T ss_dssp -EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCC-----------
T ss_pred EEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHh-----------
Confidence 89999999999999999999999999999866555553 3333221100 02466776665444321
Q ss_pred ccccccCcchhhccCCccEEEEeccccCcc
Q 019839 199 QERYSWNSSELKEVQRASVLLAADVIYSDD 228 (335)
Q Consensus 199 ~~~~~w~~~~~~~~~~fDlIlasDviY~~~ 228 (335)
.....||+|.. |-+|...
T Consensus 147 -----------~~~~s~DVVY~-DPMFp~~ 164 (234)
T PF04445_consen 147 -----------QPDNSFDVVYF-DPMFPER 164 (234)
T ss_dssp -----------CHSS--SEEEE---S----
T ss_pred -----------hcCCCCCEEEE-CCCCCCc
Confidence 12357898887 6666543
No 274
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=84.71 E-value=2 Score=38.50 Aligned_cols=114 Identities=15% Similarity=0.035 Sum_probs=70.6
Q ss_pred hhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhC-C--EEEEecCchHHHHHHHHHHHHccCCCCCCCeeE
Q 019839 100 KAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVA-W--TVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVH 176 (335)
Q Consensus 100 ~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~-~--~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~ 176 (335)
+|+.-|.+..... .-.-.|++|+||||-.|--+-++++.. . .|++.|+.|-- +...+.
T Consensus 28 RAa~KL~el~~k~---~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~----------------~~~~V~ 88 (205)
T COG0293 28 RAAYKLLELNEKF---KLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK----------------PIPGVI 88 (205)
T ss_pred hHHHHHHHHHHhc---CeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc----------------cCCCce
Confidence 4677777665554 133467999999999999999888883 3 49999998510 034577
Q ss_pred EEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEecccc------------CcccHHHHHHHHHHhccCC
Q 019839 177 VRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIY------------SDDLTDALFHTLKRLMPLG 244 (335)
Q Consensus 177 v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY------------~~~~~~~L~~tl~~lL~~~ 244 (335)
..+.|..+..... ... +.-...++|+|++ |.-- ...+....+......|+++
T Consensus 89 ~iq~d~~~~~~~~----------~l~-----~~l~~~~~DvV~s-D~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~ 152 (205)
T COG0293 89 FLQGDITDEDTLE----------KLL-----EALGGAPVDVVLS-DMAPNTSGNRSVDHARSMYLCELALEFALEVLKPG 152 (205)
T ss_pred EEeeeccCccHHH----------HHH-----HHcCCCCcceEEe-cCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCC
Confidence 7888877752211 000 0001224688883 2221 1234556677778889988
Q ss_pred Ccce
Q 019839 245 SKKV 248 (335)
Q Consensus 245 ~~~~ 248 (335)
|..+
T Consensus 153 G~fv 156 (205)
T COG0293 153 GSFV 156 (205)
T ss_pred CeEE
Confidence 8543
No 275
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=83.71 E-value=7.1 Score=37.28 Aligned_cols=121 Identities=17% Similarity=0.154 Sum_probs=65.7
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEec------cCCCCC--CCC-c
Q 019839 120 NGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDL------NWMNPW--PPI-F 190 (335)
Q Consensus 120 ~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~l------dW~~~~--~~~-~ 190 (335)
...+||==|||+|-++.-+|..|..+-+-+.+--|+ +-.+..+|..... ..+.+.+. .|..+. .+. .
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Ml--i~S~FiLN~~~~~--nq~~IYPfIh~~sn~~~~dDQlrpi~~ 225 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFML--ICSSFILNYCKQE--NQFTIYPFIHQYSNSLSRDDQLRPISI 225 (369)
T ss_pred cCceEEecCCCchhHHHHHHHhcccccccHHHHHHH--HHHHHHHHhhccC--CcEEEEeeeeccccccccccccccccC
Confidence 456899999999999999999998877777764443 4445555543321 22222221 111110 000 0
Q ss_pred -------cCCC-------CCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839 191 -------SLGN-------SSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV 248 (335)
Q Consensus 191 -------~~~~-------~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~ 248 (335)
..++ +.++.+.+.- ....+.||+|+.+--|=-....-..++||..+|++||.-+
T Consensus 226 PD~~p~~~~~~~~~fsicaGDF~evy~~----s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWi 293 (369)
T KOG2798|consen 226 PDIHPASSNGNTGSFSICAGDFLEVYGT----SSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWI 293 (369)
T ss_pred ccccccccCCCCCCccccccceeEEecC----cCCCCccceEEEEEEeechHHHHHHHHHHHHhccCCcEEE
Confidence 0000 1111111111 1123479999997222222344557899999999988433
No 276
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=82.98 E-value=2.5 Score=40.90 Aligned_cols=43 Identities=26% Similarity=0.316 Sum_probs=35.9
Q ss_pred CCCCCeEEEEcCc-cCHHHHHHHHh-C-CEEEEecCchHHHHHHHH
Q 019839 118 DFNGIISLELGAG-TGLAGILLSRV-A-WTVFLTDHGNYILDNCAK 160 (335)
Q Consensus 118 ~~~g~~VLELG~G-tGL~gl~la~~-~-~~V~~TD~~~~~l~~~~~ 160 (335)
...+.+|+=+||| .||+.+.+|+. | ++|+++|.+++=++.+++
T Consensus 166 ~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~ 211 (350)
T COG1063 166 VRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKE 211 (350)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH
Confidence 3445599999999 69999888887 3 789999999988888875
No 277
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=82.98 E-value=1.2 Score=42.77 Aligned_cols=65 Identities=18% Similarity=0.089 Sum_probs=46.8
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHH-------HHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 118 DFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILD-------NCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~-------~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
.-.|+-|.|==.|||-+-+.+|+.|+.|++||++-.++. +++.|.+.-+.. ..-+.+...|..+.
T Consensus 206 v~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~---~~fldvl~~D~sn~ 277 (421)
T KOG2671|consen 206 VKPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSS---SQFLDVLTADFSNP 277 (421)
T ss_pred cCCCCEEecCccccCceeeehhhhcceeeccccchheeecccCCCcchhHhHHHhCCc---chhhheeeecccCc
Confidence 357899999999999888899999999999999976665 344555544422 23355566665554
No 278
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=82.19 E-value=19 Score=34.15 Aligned_cols=44 Identities=16% Similarity=-0.056 Sum_probs=31.1
Q ss_pred CCCCCCeEEEEcCc-cCHHHHHHHHh-CCEEEEecCchHHHHHHHH
Q 019839 117 SDFNGIISLELGAG-TGLAGILLSRV-AWTVFLTDHGNYILDNCAK 160 (335)
Q Consensus 117 ~~~~g~~VLELG~G-tGL~gl~la~~-~~~V~~TD~~~~~l~~~~~ 160 (335)
...+|.+||=.|+| .|+..+.+|+. |++|++++.+++-++.+++
T Consensus 162 ~~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~ 207 (329)
T TIGR02822 162 SLPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALA 207 (329)
T ss_pred CCCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Confidence 34568999999976 45555555554 7789999998776666553
No 279
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=81.91 E-value=3.4 Score=37.37 Aligned_cols=46 Identities=20% Similarity=0.208 Sum_probs=33.1
Q ss_pred CCCeEEEEcCccCHHHHHHHHh-C---CEEEEecCchHHHHHHHHHHHHc
Q 019839 120 NGIISLELGAGTGLAGILLSRV-A---WTVFLTDHGNYILDNCAKNVQLN 165 (335)
Q Consensus 120 ~g~~VLELG~GtGL~gl~la~~-~---~~V~~TD~~~~~l~~~~~Nv~~N 165 (335)
...++-|=.||.|.+--+++.+ + ..|+++|+++++|+.+++|+.+-
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LL 100 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLL 100 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCC
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhc
Confidence 3458999999999444333333 2 58999999999999999998754
No 280
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=80.82 E-value=2.2 Score=39.17 Aligned_cols=43 Identities=16% Similarity=0.275 Sum_probs=29.2
Q ss_pred CCeEEEEcCccCHHHHHHHHh-C---------CEEEEecCchHHHHHHHHHHH
Q 019839 121 GIISLELGAGTGLAGILLSRV-A---------WTVFLTDHGNYILDNCAKNVQ 163 (335)
Q Consensus 121 g~~VLELG~GtGL~gl~la~~-~---------~~V~~TD~~~~~l~~~~~Nv~ 163 (335)
..+|+|+|+|.|.+..-+.+. . .++++.+.++.+.+.-++++.
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~ 71 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLS 71 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhh
Confidence 369999999999776555443 1 379999999877666655543
No 281
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=80.15 E-value=3.7 Score=38.26 Aligned_cols=107 Identities=19% Similarity=0.220 Sum_probs=58.3
Q ss_pred eEEEEcCc---cCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839 123 ISLELGAG---TGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA 197 (335)
Q Consensus 123 ~VLELG~G---tGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~ 197 (335)
..|||||| .|-+--++-+. .++|+-+|.+|-++...+.-+..|. .+...+...|..+....... ..
T Consensus 71 QFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~-----~g~t~~v~aD~r~p~~iL~~----p~ 141 (267)
T PF04672_consen 71 QFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNP-----RGRTAYVQADLRDPEAILAH----PE 141 (267)
T ss_dssp EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-T-----TSEEEEEE--TT-HHHHHCS----HH
T ss_pred eEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCC-----CccEEEEeCCCCCHHHHhcC----HH
Confidence 69999999 34443333333 5799999999999888877766654 34577788887665211100 00
Q ss_pred cccccccCcchhhccCCccEEEEeccccCc---ccHHHHHHHHHHhccCCCc
Q 019839 198 SQERYSWNSSELKEVQRASVLLAADVIYSD---DLTDALFHTLKRLMPLGSK 246 (335)
Q Consensus 198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~~---~~~~~L~~tl~~lL~~~~~ 246 (335)
....+ ...+.=-|+...++++. +....+++++...|.+|+.
T Consensus 142 ~~~~l--------D~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~ 185 (267)
T PF04672_consen 142 VRGLL--------DFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSY 185 (267)
T ss_dssp HHCC----------TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-E
T ss_pred HHhcC--------CCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCce
Confidence 00001 11233356667777763 5688899999999998774
No 282
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=80.00 E-value=0.76 Score=43.03 Aligned_cols=121 Identities=16% Similarity=0.170 Sum_probs=73.2
Q ss_pred EecccccCCCCccceeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHH
Q 019839 83 IQHNITSLIPSVGLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNV 162 (335)
Q Consensus 83 i~~~~~~~~~~~G~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv 162 (335)
|...+++....+-...|+-..-+.+. . -.|..+++.|||-|-....- -...+++.|+...++.-+++.
T Consensus 17 IYd~ia~~fs~tr~~~Wp~v~qfl~~---~------~~gsv~~d~gCGngky~~~~--p~~~~ig~D~c~~l~~~ak~~- 84 (293)
T KOG1331|consen 17 IYDKIATHFSATRAAPWPMVRQFLDS---Q------PTGSVGLDVGCGNGKYLGVN--PLCLIIGCDLCTGLLGGAKRS- 84 (293)
T ss_pred HHHHhhhhccccccCccHHHHHHHhc---c------CCcceeeecccCCcccCcCC--CcceeeecchhhhhccccccC-
Confidence 33344555667888999976544333 2 24889999999988322111 123578888886665555421
Q ss_pred HHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCccc---HHHHHHHHHH
Q 019839 163 QLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDL---TDALFHTLKR 239 (335)
Q Consensus 163 ~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~---~~~L~~tl~~ 239 (335)
| .. .+..-|-.+.. .....||.+|..-++++-.. -...++.+.+
T Consensus 85 --~-------~~-~~~~ad~l~~p-----------------------~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r 131 (293)
T KOG1331|consen 85 --G-------GD-NVCRADALKLP-----------------------FREESFDAALSIAVIHHLSTRERRERALEELLR 131 (293)
T ss_pred --C-------Cc-eeehhhhhcCC-----------------------CCCCccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 1 10 11111111110 12348999999999999654 4556777788
Q ss_pred hccCCCcce
Q 019839 240 LMPLGSKKV 248 (335)
Q Consensus 240 lL~~~~~~~ 248 (335)
.++++|...
T Consensus 132 ~lrpgg~~l 140 (293)
T KOG1331|consen 132 VLRPGGNAL 140 (293)
T ss_pred HhcCCCceE
Confidence 889999876
No 283
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=78.85 E-value=6.3 Score=38.79 Aligned_cols=55 Identities=20% Similarity=0.200 Sum_probs=35.6
Q ss_pred CeEEEEcCc-cCHHH-HHHHHhC-CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 122 IISLELGAG-TGLAG-ILLSRVA-WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 122 ~~VLELG~G-tGL~g-l~la~~~-~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
++||=|||| .|.+- --+|+.+ .+|++.|.+.+-++.+..+. ..++++..+|-.+.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~---------~~~v~~~~vD~~d~ 59 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELI---------GGKVEALQVDAADV 59 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhc---------cccceeEEecccCh
Confidence 579999995 34222 2234445 69999999976655554432 24677888886665
No 284
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=78.56 E-value=50 Score=32.46 Aligned_cols=66 Identities=20% Similarity=0.230 Sum_probs=43.2
Q ss_pred cceeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccC
Q 019839 95 GLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSG 167 (335)
Q Consensus 95 G~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~ 167 (335)
-+|-|+||- +||+.+... ....+ +||=||=.-|.++..++..+.. ..+|-- -....++.|+++|+.
T Consensus 24 ~l~awdaad---e~ll~~~~~-~~~~~-~~~i~nd~fGal~~~l~~~~~~-~~~ds~-~~~~~~~~n~~~n~~ 89 (378)
T PRK15001 24 PLQAWEAAD---EYLLQQLDD-TEIRG-PVLILNDAFGALSCALAEHKPY-SIGDSY-ISELATRENLRLNGI 89 (378)
T ss_pred cccccccHH---HHHHHHHhh-cccCC-CEEEEcCchhHHHHHHHhCCCC-eeehHH-HHHHHHHHHHHHcCC
Confidence 489999974 344443210 11223 7999999999999998865443 345643 334567899999974
No 285
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.87 E-value=15 Score=31.31 Aligned_cols=45 Identities=11% Similarity=0.125 Sum_probs=38.4
Q ss_pred CeEEEEcCccCHHHHHHHHhC-CEEEEecCchHHHHHHHHHHHHcc
Q 019839 122 IISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDNCAKNVQLNS 166 (335)
Q Consensus 122 ~~VLELG~GtGL~gl~la~~~-~~V~~TD~~~~~l~~~~~Nv~~N~ 166 (335)
.+.+|||+|-|-+=+++|++| ..-++.+++|-++...+...-+.+
T Consensus 74 GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g 119 (199)
T KOG4058|consen 74 GKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAG 119 (199)
T ss_pred CcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHh
Confidence 479999999999999999998 578999999999888876665554
No 286
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=76.72 E-value=7.2 Score=38.21 Aligned_cols=47 Identities=28% Similarity=0.362 Sum_probs=34.1
Q ss_pred HHHHHHHhhcCCCCCCCC-CeEEEEcCccCHHHHHHHHh-CCEEEEecCchHH
Q 019839 104 VLADFVMHKMCTSSDFNG-IISLELGAGTGLAGILLSRV-AWTVFLTDHGNYI 154 (335)
Q Consensus 104 ~La~~l~~~~~~~~~~~g-~~VLELG~GtGL~gl~la~~-~~~V~~TD~~~~~ 154 (335)
.|++.+.+- .++.| ..|+|+|+|.|.++-+++.. |-.|.+.|.+...
T Consensus 140 ~lselvSsi----~~f~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~ 188 (476)
T KOG2651|consen 140 RLSELVSSI----SDFTGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRL 188 (476)
T ss_pred HHHHHHHHH----HhhcCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHH
Confidence 345544443 34555 57999999999888777755 8899999999543
No 287
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=76.32 E-value=16 Score=34.89 Aligned_cols=46 Identities=9% Similarity=-0.049 Sum_probs=39.5
Q ss_pred CCCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHH
Q 019839 119 FNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQL 164 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~ 164 (335)
-+|..++|-=+|.|--+.++++. ..+|++.|.++.+++.++.++..
T Consensus 19 ~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~ 66 (305)
T TIGR00006 19 KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSD 66 (305)
T ss_pred CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhh
Confidence 46779999999999888888775 37899999999999999888754
No 288
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=76.28 E-value=9.5 Score=36.28 Aligned_cols=43 Identities=16% Similarity=0.167 Sum_probs=32.3
Q ss_pred CCCCCeEEEEcCc-cCHHHHHHHHh-CC-EEEEecCchHHHHHHHH
Q 019839 118 DFNGIISLELGAG-TGLAGILLSRV-AW-TVFLTDHGNYILDNCAK 160 (335)
Q Consensus 118 ~~~g~~VLELG~G-tGL~gl~la~~-~~-~V~~TD~~~~~l~~~~~ 160 (335)
..+|.+||=.||| .|+..+.+|+. |. +|+++|.+++-++.+++
T Consensus 167 ~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~ 212 (343)
T PRK09880 167 DLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE 212 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH
Confidence 3478999999987 56666666666 55 79999999877776653
No 289
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=76.21 E-value=11 Score=35.72 Aligned_cols=63 Identities=16% Similarity=0.187 Sum_probs=46.2
Q ss_pred CCCCCCCeEEEEcCccCH---HHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 116 SSDFNGIISLELGAGTGL---AGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 116 ~~~~~g~~VLELG~GtGL---~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
...++|+.||==|+|.|+ .++-+|++|+++++.|++.+..+...+.++.++ +++....|-.+.
T Consensus 33 ~k~v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g-------~~~~y~cdis~~ 98 (300)
T KOG1201|consen 33 LKSVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG-------EAKAYTCDISDR 98 (300)
T ss_pred hhhccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC-------ceeEEEecCCCH
Confidence 356899999999999985 556677779999999999876666666665542 455566665554
No 290
>PRK08703 short chain dehydrogenase; Provisional
Probab=76.09 E-value=32 Score=30.50 Aligned_cols=45 Identities=20% Similarity=0.242 Sum_probs=31.6
Q ss_pred CCCCCeEEEEcCccCHHHHHHHH----hCCEEEEecCchHHHHHHHHHHH
Q 019839 118 DFNGIISLELGAGTGLAGILLSR----VAWTVFLTDHGNYILDNCAKNVQ 163 (335)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~la~----~~~~V~~TD~~~~~l~~~~~Nv~ 163 (335)
.+++++||=.||+.| +|..+++ .|.+|++++.++.-++.+...+.
T Consensus 3 ~l~~k~vlItG~sgg-iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~ 51 (239)
T PRK08703 3 TLSDKTILVTGASQG-LGEQVAKAYAAAGATVILVARHQKKLEKVYDAIV 51 (239)
T ss_pred CCCCCEEEEECCCCc-HHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHH
Confidence 367899999996544 4555444 37899999999876665555543
No 291
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=75.98 E-value=17 Score=32.18 Aligned_cols=60 Identities=18% Similarity=0.167 Sum_probs=40.5
Q ss_pred CCCCeEEEEcCccCHHHHHHHH----hCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 119 FNGIISLELGAGTGLAGILLSR----VAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~la~----~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
..+++||=.|++ |.+|..+++ .|.+|++++.++.-+......+... ..++.+...|+.+.
T Consensus 4 ~~~~~ilItGas-g~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~------~~~~~~~~~Dl~~~ 67 (251)
T PRK12826 4 LEGRVALVTGAA-RGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAA------GGKARARQVDVRDR 67 (251)
T ss_pred CCCCEEEEcCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCeEEEEECCCCCH
Confidence 578899988875 445655544 3789999999876555554444432 24577788888765
No 292
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=75.57 E-value=5.2 Score=37.61 Aligned_cols=40 Identities=15% Similarity=0.085 Sum_probs=28.2
Q ss_pred CCCCeEEEEcCc-cCHHHHHHHHh-CCE-EEEecCchHHHHHH
Q 019839 119 FNGIISLELGAG-TGLAGILLSRV-AWT-VFLTDHGNYILDNC 158 (335)
Q Consensus 119 ~~g~~VLELG~G-tGL~gl~la~~-~~~-V~~TD~~~~~l~~~ 158 (335)
.++.+||=+||| .|+..+.+|+. |++ |+++|.+++-++.+
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a 185 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGA 185 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhh
Confidence 467889999987 67777777765 654 77888876554443
No 293
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=75.44 E-value=8.1 Score=38.42 Aligned_cols=43 Identities=19% Similarity=0.117 Sum_probs=32.3
Q ss_pred CCCCCCeEEEEcCc-cCHHHHHHHHh-CCEEEEecCchHHHHHHH
Q 019839 117 SDFNGIISLELGAG-TGLAGILLSRV-AWTVFLTDHGNYILDNCA 159 (335)
Q Consensus 117 ~~~~g~~VLELG~G-tGL~gl~la~~-~~~V~~TD~~~~~l~~~~ 159 (335)
..+.|++|+=+|+| .|+....+++. |++|+.+|.++.-+..++
T Consensus 198 ~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~ 242 (413)
T cd00401 198 VMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAA 242 (413)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHH
Confidence 45789999999999 57655555544 789999999976555443
No 294
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=74.30 E-value=6 Score=38.23 Aligned_cols=44 Identities=18% Similarity=0.179 Sum_probs=35.2
Q ss_pred CCCCCCeEEEEcCc-cCHHHHHHHH-hCCEEEEecCchHHHHHHHH
Q 019839 117 SDFNGIISLELGAG-TGLAGILLSR-VAWTVFLTDHGNYILDNCAK 160 (335)
Q Consensus 117 ~~~~g~~VLELG~G-tGL~gl~la~-~~~~V~~TD~~~~~l~~~~~ 160 (335)
..-+|++|+=.|+| .|..++.+|+ +|++|++.|.+++-++.+++
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~ 208 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKK 208 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHH
Confidence 44679999999998 4566677777 58999999999887777764
No 295
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=74.08 E-value=11 Score=35.92 Aligned_cols=43 Identities=19% Similarity=0.139 Sum_probs=32.4
Q ss_pred CCCCCCeEEEEcCc-cCHHHHHHHHh-CCEEEEecCchHHHHHHH
Q 019839 117 SDFNGIISLELGAG-TGLAGILLSRV-AWTVFLTDHGNYILDNCA 159 (335)
Q Consensus 117 ~~~~g~~VLELG~G-tGL~gl~la~~-~~~V~~TD~~~~~l~~~~ 159 (335)
...+|.+||=+||| .|+..+.+|+. |.+|+++|.+++-++.++
T Consensus 163 ~~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~ 207 (349)
T TIGR03201 163 GLKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMK 207 (349)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHH
Confidence 34578999999996 36666666665 678999999987776664
No 296
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=73.87 E-value=9.5 Score=31.42 Aligned_cols=46 Identities=17% Similarity=0.242 Sum_probs=30.7
Q ss_pred CCCCCCeEEEEcCcc-C-HHHHHHHHhC-CEEEEecCchHHHHHHHHHH
Q 019839 117 SDFNGIISLELGAGT-G-LAGILLSRVA-WTVFLTDHGNYILDNCAKNV 162 (335)
Q Consensus 117 ~~~~g~~VLELG~Gt-G-L~gl~la~~~-~~V~~TD~~~~~l~~~~~Nv 162 (335)
..+++++||=||+|- | .+.-.++..| .+|+.+..+.+-.+.+...+
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~ 56 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEF 56 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc
Confidence 357999999999983 3 3333334445 46999999976555555444
No 297
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=73.82 E-value=9.8 Score=36.96 Aligned_cols=45 Identities=18% Similarity=0.110 Sum_probs=34.8
Q ss_pred CCCCCCeEEEEcCcc-CHHHHHHHHh-CC-EEEEecCchHHHHHHHHH
Q 019839 117 SDFNGIISLELGAGT-GLAGILLSRV-AW-TVFLTDHGNYILDNCAKN 161 (335)
Q Consensus 117 ~~~~g~~VLELG~Gt-GL~gl~la~~-~~-~V~~TD~~~~~l~~~~~N 161 (335)
...+|.+||.+|||. |...+.+|+. |. +|++||.+++.++.++..
T Consensus 181 ~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 181 EVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH 228 (386)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence 345788999999885 7777777766 54 699999998888777653
No 298
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=73.80 E-value=20 Score=32.10 Aligned_cols=61 Identities=20% Similarity=0.175 Sum_probs=40.7
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHh----CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 118 DFNGIISLELGAGTGLAGILLSRV----AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~la~~----~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
.++|++||=.|+. |-+|..+++. |.+|++++.++.-++.+...+... ..++.+...|..+.
T Consensus 7 ~~~~k~vlItGa~-g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~------~~~~~~~~~D~~~~ 71 (255)
T PRK07523 7 DLTGRRALVTGSS-QGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQ------GLSAHALAFDVTDH 71 (255)
T ss_pred CCCCCEEEEECCc-chHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc------CceEEEEEccCCCH
Confidence 3689999999964 4445555543 789999999876665555555432 23466667776654
No 299
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=73.58 E-value=12 Score=34.56 Aligned_cols=42 Identities=21% Similarity=0.209 Sum_probs=30.0
Q ss_pred CCCCeEEEEcCc-cCHHHHHHHHh-CCE-EEEecCchHHHHHHHH
Q 019839 119 FNGIISLELGAG-TGLAGILLSRV-AWT-VFLTDHGNYILDNCAK 160 (335)
Q Consensus 119 ~~g~~VLELG~G-tGL~gl~la~~-~~~-V~~TD~~~~~l~~~~~ 160 (335)
.+|.+||=.|+| .|+..+.+|+. |.+ |+++|.+++-++.++.
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~ 163 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALS 163 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence 478899999887 46666666665 654 9999988766655543
No 300
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=72.48 E-value=8.6 Score=33.47 Aligned_cols=41 Identities=29% Similarity=0.423 Sum_probs=28.1
Q ss_pred EEEEcCcc-C-HHHHHHHHhCCEEEEecCchHHHHHHHHHHHH
Q 019839 124 SLELGAGT-G-LAGILLSRVAWTVFLTDHGNYILDNCAKNVQL 164 (335)
Q Consensus 124 VLELG~Gt-G-L~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~ 164 (335)
|-=+|+|+ | -.+..+|..|.+|++.|.+++.++.++..+..
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~ 44 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIER 44 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHH
T ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHH
Confidence 55578874 3 33444555699999999999998888777655
No 301
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=72.12 E-value=8.7 Score=35.86 Aligned_cols=41 Identities=15% Similarity=0.124 Sum_probs=35.7
Q ss_pred eEEEEcCccCHHHHHHHHhC-CEEEEecCchHHHHHHHHHHH
Q 019839 123 ISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDNCAKNVQ 163 (335)
Q Consensus 123 ~VLELG~GtGL~gl~la~~~-~~V~~TD~~~~~l~~~~~Nv~ 163 (335)
+|+||=||.|..++.+...| ..|.+.|+++.+.+..+.|..
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~ 43 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP 43 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc
Confidence 79999999999999999998 468999999998888888874
No 302
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=72.04 E-value=6.4 Score=37.57 Aligned_cols=41 Identities=17% Similarity=0.096 Sum_probs=30.8
Q ss_pred CCCCeEEEEcCc-cCHHHHHHHHh---CCEEEEecCchHHHHHHH
Q 019839 119 FNGIISLELGAG-TGLAGILLSRV---AWTVFLTDHGNYILDNCA 159 (335)
Q Consensus 119 ~~g~~VLELG~G-tGL~gl~la~~---~~~V~~TD~~~~~l~~~~ 159 (335)
..|.+||=+||| .|+..+.+++. +.+|+++|.+++-++.++
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~ 206 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFS 206 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHh
Confidence 468899999987 57766665653 468999999876666664
No 303
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=71.84 E-value=4.4 Score=32.44 Aligned_cols=31 Identities=29% Similarity=0.397 Sum_probs=26.1
Q ss_pred ccCHHHHHHHHh-CCEEEEecCchHHHHHHHH
Q 019839 130 GTGLAGILLSRV-AWTVFLTDHGNYILDNCAK 160 (335)
Q Consensus 130 GtGL~gl~la~~-~~~V~~TD~~~~~l~~~~~ 160 (335)
|.|+..+.+|+. |.+|+++|.++.-++.+++
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~ 32 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKE 32 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHh
Confidence 578888888887 8999999999887777764
No 304
>PRK06949 short chain dehydrogenase; Provisional
Probab=71.59 E-value=25 Score=31.47 Aligned_cols=61 Identities=21% Similarity=0.299 Sum_probs=40.7
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHh----CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 118 DFNGIISLELGAGTGLAGILLSRV----AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~la~~----~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
.+.+++||=.|++. -+|..+++. |.+|++++.+++-++.+...+... ..++.+...|..+.
T Consensus 6 ~~~~k~ilItGasg-~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~------~~~~~~~~~D~~~~ 70 (258)
T PRK06949 6 NLEGKVALVTGASS-GLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAE------GGAAHVVSLDVTDY 70 (258)
T ss_pred CCCCCEEEEECCCc-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCcEEEEEecCCCH
Confidence 46789999999544 445544443 789999999987766665554332 23566777776653
No 305
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=71.38 E-value=7 Score=34.27 Aligned_cols=37 Identities=19% Similarity=0.198 Sum_probs=21.9
Q ss_pred eEEEEcCc-cCHH-HHHHHHhCCEEEEecCchHHHHHHH
Q 019839 123 ISLELGAG-TGLA-GILLSRVAWTVFLTDHGNYILDNCA 159 (335)
Q Consensus 123 ~VLELG~G-tGL~-gl~la~~~~~V~~TD~~~~~l~~~~ 159 (335)
+|-=+|.| .|++ ++.+|..|.+|++.|.+++.++.+.
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~ 40 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALN 40 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHH
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHh
Confidence 45556666 5533 3445666899999999987766654
No 306
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=71.28 E-value=5.9 Score=38.97 Aligned_cols=37 Identities=22% Similarity=0.300 Sum_probs=25.9
Q ss_pred eEEEEcCc-cCH-HHHHHHHhCCEEEEecCchHHHHHHH
Q 019839 123 ISLELGAG-TGL-AGILLSRVAWTVFLTDHGNYILDNCA 159 (335)
Q Consensus 123 ~VLELG~G-tGL-~gl~la~~~~~V~~TD~~~~~l~~~~ 159 (335)
+|--+|+| .|| .|..+|..|..|+|.|+++.-++.++
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln 40 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLN 40 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHh
Confidence 45556666 563 34566777999999999986666554
No 307
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=70.81 E-value=26 Score=31.43 Aligned_cols=62 Identities=15% Similarity=0.300 Sum_probs=43.0
Q ss_pred CCCCCCeEEEEcCccCHHHHHHH----HhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 117 SDFNGIISLELGAGTGLAGILLS----RVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 117 ~~~~g~~VLELG~GtGL~gl~la----~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
..++|++||=.|++.|+ |..++ +.|.+|++++.+++.++.+...++.++ .++.+...|..+.
T Consensus 7 ~~~~~k~ilItGas~~I-G~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~Dl~~~ 72 (256)
T PRK06124 7 FSLAGQVALVTGSARGL-GFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAG------GAAEALAFDIADE 72 (256)
T ss_pred cCCCCCEEEEECCCchH-HHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcC------CceEEEEccCCCH
Confidence 34789999999987665 44333 348899999999776666655554432 4567777887664
No 308
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=69.99 E-value=5.7 Score=36.10 Aligned_cols=53 Identities=17% Similarity=0.181 Sum_probs=36.5
Q ss_pred HHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHH
Q 019839 104 VLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCA 159 (335)
Q Consensus 104 ~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~ 159 (335)
-|+.+|.+.. +.. ...+++|+=||+|.+++.+...+..|++-|+++.+....+
T Consensus 7 ~l~~~I~~~i--p~~-~~~~~vepF~G~g~V~~~~~~~~~~vi~ND~~~~l~~~~~ 59 (260)
T PF02086_consen 7 KLAKWIIELI--PKN-KHKTYVEPFAGGGSVFLNLKQPGKRVIINDINPDLINFWK 59 (260)
T ss_dssp GGHHHHHHHS---S--S-SEEEETT-TTSHHHHCC---SSEEEEEES-HHHHHHHH
T ss_pred HHHHHHHHHc--CCC-CCCEEEEEecchhHHHHHhcccccceeeeechHHHHHHHH
Confidence 3677777764 222 7889999999999999998888999999999986665444
No 309
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=69.99 E-value=12 Score=32.29 Aligned_cols=50 Identities=20% Similarity=0.066 Sum_probs=36.2
Q ss_pred eeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCc--cCH-HHHHHHHhCCEEEEecCch
Q 019839 97 QVWKAELVLADFVMHKMCTSSDFNGIISLELGAG--TGL-AGILLSRVAWTVFLTDHGN 152 (335)
Q Consensus 97 ~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~G--tGL-~gl~la~~~~~V~~TD~~~ 152 (335)
.+|.+++-+++.+. ..+.|++||=+|+| .|. +.-.+...|++|+.++...
T Consensus 26 ~~~~a~v~l~~~~~------~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~ 78 (168)
T cd01080 26 CTPAGILELLKRYG------IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT 78 (168)
T ss_pred ChHHHHHHHHHHcC------CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc
Confidence 35666666666542 45899999999999 376 5555556678899999874
No 310
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=69.61 E-value=29 Score=31.15 Aligned_cols=61 Identities=15% Similarity=0.137 Sum_probs=41.8
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHh----CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 118 DFNGIISLELGAGTGLAGILLSRV----AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~la~~----~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
.+++++||=.|+ +|.+|..+++. |.+|+.++.+..-++.+...+..+ ..++.+...|..+.
T Consensus 9 ~~~~k~ilItGa-~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~------~~~~~~~~~Dl~d~ 73 (259)
T PRK08213 9 DLSGKTALVTGG-SRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEAL------GIDALWIAADVADE 73 (259)
T ss_pred CcCCCEEEEECC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc------CCeEEEEEccCCCH
Confidence 367899999995 45556665544 789999999876666555555433 24566777887764
No 311
>PF05575 V_cholerae_RfbT: Vibrio cholerae RfbT protein; InterPro: IPR008890 This family consists of several RfbT proteins from Vibrio cholerae. It has been found that genetic alteration of the rfbT gene is responsible for serotype conversion of V. cholerae O1 [] and determines the difference between the Ogawa and Inaba serotypes, in that the presence of rfbT is sufficient for Inaba-to-Ogawa serotype conversion [].
Probab=69.57 E-value=3.6 Score=35.72 Aligned_cols=51 Identities=20% Similarity=0.297 Sum_probs=38.9
Q ss_pred CCCCeEEEEcCccC-HHHHHHHHh-CCEEEEecCchHHHHHHHHHHHHccCCC
Q 019839 119 FNGIISLELGAGTG-LAGILLSRV-AWTVFLTDHGNYILDNCAKNVQLNSGVF 169 (335)
Q Consensus 119 ~~g~~VLELG~GtG-L~gl~la~~-~~~V~~TD~~~~~l~~~~~Nv~~N~~~~ 169 (335)
-.+.+-+|+|+..| .+|+++-.. ..++++.+--.+|-..++.|+++|..+.
T Consensus 78 khdttyidiganvgtfcgiaarhitqgkiiaiepltemensirmnvqlnnplv 130 (286)
T PF05575_consen 78 KHDTTYIDIGANVGTFCGIAARHITQGKIIAIEPLTEMENSIRMNVQLNNPLV 130 (286)
T ss_pred cCCceEEEeccccccchhhhhhhcccCceEEEechhhhhhheeeeeeeCCcce
Confidence 35678999999999 556655444 3578888877788888999999998654
No 312
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=69.27 E-value=13 Score=30.86 Aligned_cols=42 Identities=17% Similarity=0.279 Sum_probs=28.1
Q ss_pred EEcCccC--HHHHHHH--Hh--CCEEEEecCchHHHHHHHHH--HHHccC
Q 019839 126 ELGAGTG--LAGILLS--RV--AWTVFLTDHGNYILDNCAKN--VQLNSG 167 (335)
Q Consensus 126 ELG~GtG--L~gl~la--~~--~~~V~~TD~~~~~l~~~~~N--v~~N~~ 167 (335)
|+||..| -..+... +. +.+|++.+.+|...+.+++| +..|..
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~ 50 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDK 50 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTT
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCC
Confidence 7999999 3333332 33 46899999999999999999 888753
No 313
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=69.02 E-value=18 Score=33.68 Aligned_cols=42 Identities=21% Similarity=0.254 Sum_probs=31.1
Q ss_pred CCCCCeEEEEcCc-cCHHHHHHHHh-CCEEEEecCchHHHHHHH
Q 019839 118 DFNGIISLELGAG-TGLAGILLSRV-AWTVFLTDHGNYILDNCA 159 (335)
Q Consensus 118 ~~~g~~VLELG~G-tGL~gl~la~~-~~~V~~TD~~~~~l~~~~ 159 (335)
...+.+||-+|+| +|...+.+|+. |.+|++++.+++..+.++
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~ 206 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAK 206 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH
Confidence 4567888888876 46666666664 788999999987777664
No 314
>PRK05867 short chain dehydrogenase; Provisional
Probab=68.64 E-value=30 Score=30.99 Aligned_cols=60 Identities=20% Similarity=0.185 Sum_probs=41.1
Q ss_pred CCCCeEEEEcCccCHHHHHH----HHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 119 FNGIISLELGAGTGLAGILL----SRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~l----a~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
++|+++|=.|++.|+ |..+ ++.|.+|++++.+++-++.+...+... ..++.+...|..+.
T Consensus 7 ~~~k~vlVtGas~gI-G~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~------~~~~~~~~~D~~~~ 70 (253)
T PRK05867 7 LHGKRALITGASTGI-GKRVALAYVEAGAQVAIAARHLDALEKLADEIGTS------GGKVVPVCCDVSQH 70 (253)
T ss_pred CCCCEEEEECCCchH-HHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc------CCeEEEEEccCCCH
Confidence 678999999987665 3333 334889999999977666665555432 23566667776654
No 315
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=68.56 E-value=9.5 Score=36.80 Aligned_cols=44 Identities=20% Similarity=0.156 Sum_probs=32.8
Q ss_pred CCCCCCeEEEEcCc-cCHHHHHHHHh-CC-EEEEecCchHHHHHHHH
Q 019839 117 SDFNGIISLELGAG-TGLAGILLSRV-AW-TVFLTDHGNYILDNCAK 160 (335)
Q Consensus 117 ~~~~g~~VLELG~G-tGL~gl~la~~-~~-~V~~TD~~~~~l~~~~~ 160 (335)
....|.+||=.||| .|+..+.+|+. |+ +|+++|.+++-++.+++
T Consensus 182 ~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~ 228 (368)
T TIGR02818 182 KVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKK 228 (368)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 34578899999987 46666666665 66 79999999877776643
No 316
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=68.55 E-value=35 Score=30.20 Aligned_cols=43 Identities=16% Similarity=0.230 Sum_probs=32.3
Q ss_pred CCCCCCCeEEEEcCccCHHHHHHHH----hCCEEEEecCchHHHHHHHH
Q 019839 116 SSDFNGIISLELGAGTGLAGILLSR----VAWTVFLTDHGNYILDNCAK 160 (335)
Q Consensus 116 ~~~~~g~~VLELG~GtGL~gl~la~----~~~~V~~TD~~~~~l~~~~~ 160 (335)
...++|++|+=+|.| -+|..+|+ .|.+|+++|.+++.++.+..
T Consensus 23 ~~~l~gk~v~I~G~G--~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~ 69 (200)
T cd01075 23 TDSLEGKTVAVQGLG--KVGYKLAEHLLEEGAKLIVADINEEAVARAAE 69 (200)
T ss_pred CCCCCCCEEEEECCC--HHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence 356899999999998 35555544 38899999999876665544
No 317
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=67.88 E-value=23 Score=31.46 Aligned_cols=41 Identities=32% Similarity=0.370 Sum_probs=29.9
Q ss_pred CCCCeEEEEcCcc-CHHHHHHHHh-CCEEEEecCchHHHHHHH
Q 019839 119 FNGIISLELGAGT-GLAGILLSRV-AWTVFLTDHGNYILDNCA 159 (335)
Q Consensus 119 ~~g~~VLELG~Gt-GL~gl~la~~-~~~V~~TD~~~~~l~~~~ 159 (335)
.+|.+||-.|+|. |...+.+++. |.+|++++.+++..+.++
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~ 175 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAK 175 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHH
Confidence 5788999999985 4444444443 789999999876666554
No 318
>PRK06172 short chain dehydrogenase; Provisional
Probab=67.71 E-value=32 Score=30.67 Aligned_cols=61 Identities=15% Similarity=0.195 Sum_probs=41.1
Q ss_pred CCCCeEEEEcCccCHHHHH---HHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 119 FNGIISLELGAGTGLAGIL---LSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~---la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
+++++||=.|++.|+-.-+ +++.|.+|++++.+++-++.+...+... ..++.+...|..+.
T Consensus 5 l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~ 68 (253)
T PRK06172 5 FSGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREA------GGEALFVACDVTRD 68 (253)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc------CCceEEEEcCCCCH
Confidence 6789999999866653333 2334789999999976666555555432 24567777777664
No 319
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=67.66 E-value=57 Score=28.86 Aligned_cols=34 Identities=24% Similarity=0.303 Sum_probs=26.4
Q ss_pred CCCCCeEEEEcCc-cC-HHHHHHHHhCC-EEEEecCc
Q 019839 118 DFNGIISLELGAG-TG-LAGILLSRVAW-TVFLTDHG 151 (335)
Q Consensus 118 ~~~g~~VLELG~G-tG-L~gl~la~~~~-~V~~TD~~ 151 (335)
.++.++|+=+||| .| -++..+++.|. ++++.|.+
T Consensus 18 ~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 18 KLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred HHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 3678899999999 44 45566677775 79999998
No 320
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=67.58 E-value=8.3 Score=38.25 Aligned_cols=36 Identities=19% Similarity=0.152 Sum_probs=27.2
Q ss_pred CCCCCeEEEEcCc-cCHHHHHHHHh-CCEEEEecCchH
Q 019839 118 DFNGIISLELGAG-TGLAGILLSRV-AWTVFLTDHGNY 153 (335)
Q Consensus 118 ~~~g~~VLELG~G-tGL~gl~la~~-~~~V~~TD~~~~ 153 (335)
.+.|++|+=+|+| +|..-...++. |.+|+++|.++.
T Consensus 192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~ 229 (406)
T TIGR00936 192 LIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPI 229 (406)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChh
Confidence 4789999999999 56544444443 789999999874
No 321
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=67.46 E-value=44 Score=29.00 Aligned_cols=46 Identities=28% Similarity=0.407 Sum_probs=30.4
Q ss_pred CCCCCCeEEEEcC-c-cC-HHHHHHHHhCCEEEEecCchHHHHHHHHHH
Q 019839 117 SDFNGIISLELGA-G-TG-LAGILLSRVAWTVFLTDHGNYILDNCAKNV 162 (335)
Q Consensus 117 ~~~~g~~VLELG~-G-tG-L~gl~la~~~~~V~~TD~~~~~l~~~~~Nv 162 (335)
..+++++|+=+|+ | .| .....+++.|++|++.+.+.+-++.+...+
T Consensus 24 ~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l 72 (194)
T cd01078 24 KDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSL 72 (194)
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHH
Confidence 3578999999996 4 44 233334455789999998865555544444
No 322
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=67.46 E-value=17 Score=34.19 Aligned_cols=42 Identities=26% Similarity=0.268 Sum_probs=29.4
Q ss_pred CCCCCeEEEEcCc-cCHHHHHHHHh-CCE-EEEecCchHHHHHHH
Q 019839 118 DFNGIISLELGAG-TGLAGILLSRV-AWT-VFLTDHGNYILDNCA 159 (335)
Q Consensus 118 ~~~g~~VLELG~G-tGL~gl~la~~-~~~-V~~TD~~~~~l~~~~ 159 (335)
...|.+||=+|+| .|+..+.+|+. |++ |+++|.+++-++.++
T Consensus 161 ~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~ 205 (339)
T cd08239 161 VSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAK 205 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence 4568999999876 45555555554 666 999999876665553
No 323
>PRK08862 short chain dehydrogenase; Provisional
Probab=67.38 E-value=31 Score=30.83 Aligned_cols=60 Identities=20% Similarity=0.194 Sum_probs=39.9
Q ss_pred CCCCeEEEEcCccCH---HHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCC
Q 019839 119 FNGIISLELGAGTGL---AGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMN 184 (335)
Q Consensus 119 ~~g~~VLELG~GtGL---~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~ 184 (335)
++|+++|=.|++.|+ +...+++.|.+|++++.+++.++.+...+.... ..+....+|-.+
T Consensus 3 ~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~------~~~~~~~~D~~~ 65 (227)
T PRK08862 3 IKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALT------DNVYSFQLKDFS 65 (227)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC------CCeEEEEccCCC
Confidence 578999999999886 233344458999999999877766655554432 234445555443
No 324
>PRK08339 short chain dehydrogenase; Provisional
Probab=66.83 E-value=35 Score=31.01 Aligned_cols=63 Identities=16% Similarity=0.217 Sum_probs=41.7
Q ss_pred CCCCCeEEEEcCccCHHH---HHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 118 DFNGIISLELGAGTGLAG---ILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 118 ~~~g~~VLELG~GtGL~g---l~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
.++|+++|=.|++.|+-. ..+++.|++|+++|.+++-++.+...+.... ..++.+...|-.+.
T Consensus 5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~Dv~~~ 70 (263)
T PRK08339 5 DLSGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSES-----NVDVSYIVADLTKR 70 (263)
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc-----CCceEEEEecCCCH
Confidence 368999999999877522 2233348899999998766666655554321 23566677776654
No 325
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=66.81 E-value=14 Score=37.87 Aligned_cols=41 Identities=24% Similarity=0.199 Sum_probs=32.8
Q ss_pred CCCCeEEEEcCc-cCHHHHHHHHh-CCEEEEecCchHHHHHHH
Q 019839 119 FNGIISLELGAG-TGLAGILLSRV-AWTVFLTDHGNYILDNCA 159 (335)
Q Consensus 119 ~~g~~VLELG~G-tGL~gl~la~~-~~~V~~TD~~~~~l~~~~ 159 (335)
..+.+|+=+||| +|+..+.+++. |+.|++.|.++..++.++
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~ 204 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQ 204 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 467899999999 67877776665 889999999987766555
No 326
>PRK06125 short chain dehydrogenase; Provisional
Probab=66.56 E-value=36 Score=30.62 Aligned_cols=62 Identities=19% Similarity=0.262 Sum_probs=40.9
Q ss_pred CCCCeEEEEcCccCHHHHH---HHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 119 FNGIISLELGAGTGLAGIL---LSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~---la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
+++++||=.|++.|+-.-+ ++..|++|++++.+++-++.+...+.... ..++.+...|..+.
T Consensus 5 ~~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~~D~~~~ 69 (259)
T PRK06125 5 LAGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAH-----GVDVAVHALDLSSP 69 (259)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhc-----CCceEEEEecCCCH
Confidence 5789999999876643322 33448899999998776666555554322 24566777777654
No 327
>PLN02740 Alcohol dehydrogenase-like
Probab=66.56 E-value=9.9 Score=36.85 Aligned_cols=43 Identities=19% Similarity=0.094 Sum_probs=31.9
Q ss_pred CCCCCCeEEEEcCc-cCHHHHHHHHh-CC-EEEEecCchHHHHHHH
Q 019839 117 SDFNGIISLELGAG-TGLAGILLSRV-AW-TVFLTDHGNYILDNCA 159 (335)
Q Consensus 117 ~~~~g~~VLELG~G-tGL~gl~la~~-~~-~V~~TD~~~~~l~~~~ 159 (335)
...+|.+||=+||| .|+..+.+|+. |+ +|+++|.+++-++.++
T Consensus 195 ~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~ 240 (381)
T PLN02740 195 NVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGK 240 (381)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHH
Confidence 34578999999986 46666666665 66 6999999987776664
No 328
>PRK09242 tropinone reductase; Provisional
Probab=65.48 E-value=41 Score=30.14 Aligned_cols=64 Identities=14% Similarity=0.154 Sum_probs=43.1
Q ss_pred CCCCCeEEEEcCccCHHHHHH---HHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 118 DFNGIISLELGAGTGLAGILL---SRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~l---a~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
.++|+++|=.|++.|+-.-++ ++.|.+|++++.+++-++.+..++..... ..++.....|..+.
T Consensus 6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~----~~~~~~~~~Dl~~~ 72 (257)
T PRK09242 6 RLDGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFP----EREVHGLAADVSDD 72 (257)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCC----CCeEEEEECCCCCH
Confidence 468999999999766533332 33378999999987777666666654321 24667777777654
No 329
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=64.81 E-value=31 Score=30.94 Aligned_cols=124 Identities=14% Similarity=0.089 Sum_probs=60.5
Q ss_pred cceeehhHHHHHHH--HHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh------CCEEEEecCchHHHHHHHHHHHHcc
Q 019839 95 GLQVWKAELVLADF--VMHKMCTSSDFNGIISLELGAGTGLAGILLSRV------AWTVFLTDHGNYILDNCAKNVQLNS 166 (335)
Q Consensus 95 G~~vW~aa~~La~~--l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~------~~~V~~TD~~~~~l~~~~~Nv~~N~ 166 (335)
|..++.....++.| |+.. ++.+.|+|+|.=.|-..+..|.. .++|++.|++....... .++.
T Consensus 11 G~pi~q~P~Dm~~~qeli~~------~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~--a~e~-- 80 (206)
T PF04989_consen 11 GRPIIQYPQDMVAYQELIWE------LKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRK--AIES-- 80 (206)
T ss_dssp TEEESS-HHHHHHHHHHHHH------H--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG--
T ss_pred CeehhcCHHHHHHHHHHHHH------hCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchH--HHhh--
Confidence 55555555555554 3333 57789999999999877776654 26999999963221111 0111
Q ss_pred CCCCCCCeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCc
Q 019839 167 GVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSK 246 (335)
Q Consensus 167 ~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~ 246 (335)
+.. ..++++.+.+..+..... ... ..... .--+++.-|.=|..++.-+-++....++++|+-
T Consensus 81 hp~--~~rI~~i~Gds~d~~~~~--------~v~-------~~~~~-~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y 142 (206)
T PF04989_consen 81 HPM--SPRITFIQGDSIDPEIVD--------QVR-------ELASP-PHPVLVILDSSHTHEHVLAELEAYAPLVSPGSY 142 (206)
T ss_dssp ------TTEEEEES-SSSTHHHH--------TSG-------SS-----SSEEEEESS----SSHHHHHHHHHHT--TT-E
T ss_pred ccc--cCceEEEECCCCCHHHHH--------HHH-------Hhhcc-CCceEEEECCCccHHHHHHHHHHhCccCCCCCE
Confidence 111 367888888765541100 000 01111 223456667777778888888999999999763
No 330
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=64.23 E-value=91 Score=32.48 Aligned_cols=68 Identities=12% Similarity=0.096 Sum_probs=41.1
Q ss_pred CCCCCCeEEEEcCccCHHHHHHHH----hCCEEEEecCchHHHHHHHHHHHHccCCC---CCCCeeEEEeccCCCC
Q 019839 117 SDFNGIISLELGAGTGLAGILLSR----VAWTVFLTDHGNYILDNCAKNVQLNSGVF---SHQGSVHVRDLNWMNP 185 (335)
Q Consensus 117 ~~~~g~~VLELG~GtGL~gl~la~----~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~---~~~~~v~v~~ldW~~~ 185 (335)
....|++||=.|+. |.+|..+++ .|.+|++.+.+.+-+..+..++..+.... ....++.+...|..+.
T Consensus 76 ~~~~gKvVLVTGAT-GgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~ 150 (576)
T PLN03209 76 DTKDEDLAFVAGAT-GKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKP 150 (576)
T ss_pred ccCCCCEEEEECCC-CHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCH
Confidence 45688999999985 445555443 37899999998766655544443221100 0013467777777653
No 331
>PRK07814 short chain dehydrogenase; Provisional
Probab=64.04 E-value=42 Score=30.34 Aligned_cols=61 Identities=20% Similarity=0.354 Sum_probs=40.3
Q ss_pred CCCCCeEEEEcCccCHHHHHHHH----hCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 118 DFNGIISLELGAGTGLAGILLSR----VAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~la~----~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
.+++++||=.|++.| +|..+++ .|.+|++++.+++-++.+...+... ..++.+...|..+.
T Consensus 7 ~~~~~~vlItGasgg-IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~------~~~~~~~~~D~~~~ 71 (263)
T PRK07814 7 RLDDQVAVVTGAGRG-LGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAA------GRRAHVVAADLAHP 71 (263)
T ss_pred cCCCCEEEEECCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCcEEEEEccCCCH
Confidence 367899999997544 4554443 3889999999876666555554321 23566667776654
No 332
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=63.91 E-value=59 Score=30.16 Aligned_cols=61 Identities=21% Similarity=0.207 Sum_probs=37.5
Q ss_pred CCccceeehhH-HHHHHHHHhhcCCCCCCCCCeEEEEcCccCHH-HHHHHHhC--CEEEEecCch
Q 019839 92 PSVGLQVWKAE-LVLADFVMHKMCTSSDFNGIISLELGAGTGLA-GILLSRVA--WTVFLTDHGN 152 (335)
Q Consensus 92 ~~~G~~vW~aa-~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~-gl~la~~~--~~V~~TD~~~ 152 (335)
..+-.+||..- --||.-|+--..+-..-.|.+||=|||+.|.+ |-+.--.| .-|++.+.++
T Consensus 127 ~kvEyRVWnPfrSKLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~ 191 (317)
T KOG1596|consen 127 GKVEYRVWNPFRSKLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSH 191 (317)
T ss_pred CcEEEEEeChHHHHHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecc
Confidence 35778999872 23444444322112345899999999999953 33332334 3688888775
No 333
>PRK08223 hypothetical protein; Validated
Probab=63.91 E-value=12 Score=35.25 Aligned_cols=45 Identities=18% Similarity=0.254 Sum_probs=31.2
Q ss_pred CCCCCeEEEEcCc-cC-HHHHHHHHhC-CEEEEecCchHHHHHHHHHH
Q 019839 118 DFNGIISLELGAG-TG-LAGILLSRVA-WTVFLTDHGNYILDNCAKNV 162 (335)
Q Consensus 118 ~~~g~~VLELG~G-tG-L~gl~la~~~-~~V~~TD~~~~~l~~~~~Nv 162 (335)
.+++.+||=+||| .| -+...+|+.| .++++.|.+.--+.|+.+++
T Consensus 24 kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~ 71 (287)
T PRK08223 24 RLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQA 71 (287)
T ss_pred HHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhcccccc
Confidence 3678899999999 45 4456677776 58999998754444444443
No 334
>PRK06181 short chain dehydrogenase; Provisional
Probab=63.81 E-value=1.1e+02 Score=27.43 Aligned_cols=58 Identities=21% Similarity=0.260 Sum_probs=36.1
Q ss_pred CCeEEEEcCccCHHHHHHH----HhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 121 GIISLELGAGTGLAGILLS----RVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 121 g~~VLELG~GtGL~gl~la----~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
+++||=.|+..| +|..++ ..|.+|++++.++.-++.+...+... ..++.+...|..+.
T Consensus 1 ~~~vlVtGasg~-iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~------~~~~~~~~~Dl~~~ 62 (263)
T PRK06181 1 GKVVIITGASEG-IGRALAVRLARAGAQLVLAARNETRLASLAQELADH------GGEALVVPTDVSDA 62 (263)
T ss_pred CCEEEEecCCcH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCcEEEEEccCCCH
Confidence 357887776544 454443 33789999999876555554444332 24566777776664
No 335
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=63.43 E-value=34 Score=30.49 Aligned_cols=47 Identities=19% Similarity=0.097 Sum_probs=32.9
Q ss_pred CCCCCCeEEEEcCccCHHHHHHHHh----CCEEEEecCchHHHHHHHHHHHH
Q 019839 117 SDFNGIISLELGAGTGLAGILLSRV----AWTVFLTDHGNYILDNCAKNVQL 164 (335)
Q Consensus 117 ~~~~g~~VLELG~GtGL~gl~la~~----~~~V~~TD~~~~~l~~~~~Nv~~ 164 (335)
..+++++||=.|+ +|.+|..+++. |.+|+++|.++..++.+...+..
T Consensus 8 ~~~~~k~vlItG~-~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~ 58 (247)
T PRK08945 8 DLLKDRIILVTGA-GDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEA 58 (247)
T ss_pred cccCCCEEEEeCC-CchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHh
Confidence 3478999999996 45555554443 78999999997666655555543
No 336
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=63.42 E-value=15 Score=35.52 Aligned_cols=43 Identities=23% Similarity=0.173 Sum_probs=36.6
Q ss_pred CCCCCCeEEEEcCc-cCHHHHHHHHh--CCEEEEecCchHHHHHHH
Q 019839 117 SDFNGIISLELGAG-TGLAGILLSRV--AWTVFLTDHGNYILDNCA 159 (335)
Q Consensus 117 ~~~~g~~VLELG~G-tGL~gl~la~~--~~~V~~TD~~~~~l~~~~ 159 (335)
..-.|.+|.=+||| .||..|..|+. +.+|++.|++++-++.++
T Consensus 182 ~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~ 227 (366)
T COG1062 182 KVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAK 227 (366)
T ss_pred cCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHH
Confidence 44678999999999 89999999988 368999999988777765
No 337
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=63.15 E-value=86 Score=31.33 Aligned_cols=59 Identities=15% Similarity=0.119 Sum_probs=43.1
Q ss_pred CCCCeEEEEcCccC-HHHHHHHHhC--CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccC
Q 019839 119 FNGIISLELGAGTG-LAGILLSRVA--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNW 182 (335)
Q Consensus 119 ~~g~~VLELG~GtG-L~gl~la~~~--~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW 182 (335)
-+|-||||+.|-.| =++.++|.+. ..|++-|.+..-+..++.|+.+-+. .+..+..+|=
T Consensus 240 q~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv-----~ntiv~n~D~ 301 (460)
T KOG1122|consen 240 QPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGV-----TNTIVSNYDG 301 (460)
T ss_pred CCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCC-----CceEEEccCc
Confidence 37889999999987 4444444442 5799999999999999999988763 3444455543
No 338
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=63.09 E-value=17 Score=33.73 Aligned_cols=113 Identities=16% Similarity=0.058 Sum_probs=59.7
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhC-------CEEEEecCchHHHHHHHHHHHHccC---CCCCCCeeEEEeccCCCCCCC
Q 019839 119 FNGIISLELGAGTGLAGILLSRVA-------WTVFLTDHGNYILDNCAKNVQLNSG---VFSHQGSVHVRDLNWMNPWPP 188 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~la~~~-------~~V~~TD~~~~~l~~~~~Nv~~N~~---~~~~~~~v~v~~ldW~~~~~~ 188 (335)
-++..++|+|||.|.+|-.++..- ..+++.|... ..+=..|--.+.. ... .-++.+..++|......
T Consensus 17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~--~R~K~D~~~~~~~~~~~~~-R~riDI~dl~l~~~~~~ 93 (259)
T PF05206_consen 17 NPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS--NRHKADNKIRKDESEPKFE-RLRIDIKDLDLSKLPEL 93 (259)
T ss_pred CCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc--ccccchhhhhccCCCCceE-EEEEEeeccchhhcccc
Confidence 356789999999999998888763 4789999863 1111112111221 111 34566777888765441
Q ss_pred C---c--------cCCCCCccccccccCcc-hhhccCCccEEEEeccccCcccHHHHH
Q 019839 189 I---F--------SLGNSSASQERYSWNSS-ELKEVQRASVLLAADVIYSDDLTDALF 234 (335)
Q Consensus 189 ~---~--------~~~~~~~~~~~~~w~~~-~~~~~~~fDlIlasDviY~~~~~~~L~ 234 (335)
. . .|+.+++..-+..-... ......++.-|+.|-|.+|.=..+.++
T Consensus 94 ~~~~~~vv~isKHLCG~ATDlaLRcl~~~~~~~~~~~~~~gi~iA~CCHH~C~~~~yv 151 (259)
T PF05206_consen 94 QNDEKPVVAISKHLCGAATDLALRCLLNSQKLSEGNGSVRGIVIAPCCHHRCDWDSYV 151 (259)
T ss_pred cCCCCcEEEEEccccccchhHHHHhhccCccccccCCccCeEEEEeCCCCcCCHHHhC
Confidence 1 0 13333332211000000 000124677788888888865444443
No 339
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=62.99 E-value=53 Score=31.67 Aligned_cols=35 Identities=23% Similarity=0.251 Sum_probs=26.1
Q ss_pred CCCCCeEEEEcCc-cC-HHHHHHHHhC-CEEEEecCch
Q 019839 118 DFNGIISLELGAG-TG-LAGILLSRVA-WTVFLTDHGN 152 (335)
Q Consensus 118 ~~~g~~VLELG~G-tG-L~gl~la~~~-~~V~~TD~~~ 152 (335)
.+++++||=+||| .| .+...+++.| .++++.|.+.
T Consensus 21 ~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 21 KIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred hhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 4678899999999 44 4445566667 4899999874
No 340
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=62.99 E-value=44 Score=31.52 Aligned_cols=39 Identities=26% Similarity=0.181 Sum_probs=30.4
Q ss_pred CeEEEEcCc--cCHHHHHHHHhCCEEEEecCchHHHHHHHH
Q 019839 122 IISLELGAG--TGLAGILLSRVAWTVFLTDHGNYILDNCAK 160 (335)
Q Consensus 122 ~~VLELG~G--tGL~gl~la~~~~~V~~TD~~~~~l~~~~~ 160 (335)
++|+=+||| -|+.|-.+++.|..|++.+.+.+-++.+++
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~ 43 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQ 43 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhh
Confidence 578999999 347888888888999999998655565553
No 341
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=62.89 E-value=3.1 Score=41.85 Aligned_cols=49 Identities=22% Similarity=0.252 Sum_probs=43.9
Q ss_pred CCCCeEEEEcCccCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHHccC
Q 019839 119 FNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSG 167 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~N~~ 167 (335)
-++.+|||-=|+|||=+|-.|+. ..+|++-|.++..++.+++|++.|+.
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v 159 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGV 159 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCc
Confidence 46679999999999999999988 35899999999999999999999953
No 342
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=62.87 E-value=25 Score=33.79 Aligned_cols=43 Identities=21% Similarity=0.148 Sum_probs=31.3
Q ss_pred CCCCCCeEEEEcCc-cCHHHHHHHHh-CC-EEEEecCchHHHHHHH
Q 019839 117 SDFNGIISLELGAG-TGLAGILLSRV-AW-TVFLTDHGNYILDNCA 159 (335)
Q Consensus 117 ~~~~g~~VLELG~G-tGL~gl~la~~-~~-~V~~TD~~~~~l~~~~ 159 (335)
....|.+||=+|+| .|+..+.+|+. |+ +|+++|.+++-++.++
T Consensus 188 ~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~ 233 (371)
T cd08281 188 GVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAR 233 (371)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHH
Confidence 34578899889986 45555556665 66 6999999987776665
No 343
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=62.75 E-value=54 Score=28.94 Aligned_cols=60 Identities=18% Similarity=0.067 Sum_probs=38.9
Q ss_pred CCCCeEEEEcCccCHHHHHHHHh----CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 119 FNGIISLELGAGTGLAGILLSRV----AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~la~~----~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
+++++||=.|+ +|.+|..+++. |.+|++++.++.-++.+...+... ..++.+...|..+.
T Consensus 5 ~~~~~vlVtG~-sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~ 68 (239)
T PRK07666 5 LQGKNALITGA-GRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAY------GVKVVIATADVSDY 68 (239)
T ss_pred CCCCEEEEEcC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh------CCeEEEEECCCCCH
Confidence 56788999996 55556655443 889999999876555544444322 24566677766553
No 344
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=62.70 E-value=33 Score=33.98 Aligned_cols=32 Identities=34% Similarity=0.560 Sum_probs=24.8
Q ss_pred CCCCeEEEEcCccCHHHHHHHHh----CCEEEEecCch
Q 019839 119 FNGIISLELGAGTGLAGILLSRV----AWTVFLTDHGN 152 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~la~~----~~~V~~TD~~~ 152 (335)
+++++|+=+|+|. .|+.+|+. |++|+++|.++
T Consensus 3 ~~~k~v~iiG~g~--~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 3 LKGKKVLVVGAGV--SGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred cCCCEEEEECCCH--HHHHHHHHHHHCCCEEEEEeCCc
Confidence 5789999999886 55555544 89999999974
No 345
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=62.53 E-value=76 Score=30.62 Aligned_cols=35 Identities=26% Similarity=0.331 Sum_probs=25.8
Q ss_pred CCCCCeEEEEcCc-cC-HHHHHHHHhCC-EEEEecCch
Q 019839 118 DFNGIISLELGAG-TG-LAGILLSRVAW-TVFLTDHGN 152 (335)
Q Consensus 118 ~~~g~~VLELG~G-tG-L~gl~la~~~~-~V~~TD~~~ 152 (335)
.++.++||=+||| .| -+...+++.|. ++++.|.+.
T Consensus 21 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 21 KLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred HhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 3677899999999 45 34455666664 899999873
No 346
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=62.17 E-value=30 Score=32.24 Aligned_cols=44 Identities=20% Similarity=0.188 Sum_probs=29.5
Q ss_pred CeEEEEcCcc-C-HHHHHHHHhCCEEEEecCchHHHHHHHHHHHHc
Q 019839 122 IISLELGAGT-G-LAGILLSRVAWTVFLTDHGNYILDNCAKNVQLN 165 (335)
Q Consensus 122 ~~VLELG~Gt-G-L~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N 165 (335)
++|.=+|+|. | -.+..+++.|.+|++.|.+++.++.+..++..|
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~ 50 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGN 50 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 4677788874 2 233444555889999999998887765544433
No 347
>PRK07102 short chain dehydrogenase; Provisional
Probab=62.08 E-value=47 Score=29.45 Aligned_cols=58 Identities=16% Similarity=0.188 Sum_probs=36.9
Q ss_pred CeEEEEcCccCHHHHHHHH----hCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 122 IISLELGAGTGLAGILLSR----VAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 122 ~~VLELG~GtGL~gl~la~----~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
++||=.|+.. -+|..+++ .|.+|+++|.++.-++.+..++..+. ..++.+...|-.+.
T Consensus 2 ~~vlItGas~-giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~Dl~~~ 63 (243)
T PRK07102 2 KKILIIGATS-DIARACARRYAAAGARLYLAARDVERLERLADDLRARG-----AVAVSTHELDILDT 63 (243)
T ss_pred cEEEEEcCCc-HHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhc-----CCeEEEEecCCCCh
Confidence 5788888654 44554443 37899999999765555545544332 34677777776654
No 348
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=61.73 E-value=47 Score=29.20 Aligned_cols=59 Identities=17% Similarity=0.213 Sum_probs=39.3
Q ss_pred CCCCeEEEEcCccCHHHHHHHH----hCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 119 FNGIISLELGAGTGLAGILLSR----VAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~la~----~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
+++++||=.|++.|+ |..+++ .|.+|++++.+++-++.+...+..+ .++.....|+.+.
T Consensus 3 ~~~~~vlItGa~g~i-G~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-------~~~~~~~~Dl~~~ 65 (238)
T PRK05786 3 LKGKKVAIIGVSEGL-GYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY-------GNIHYVVGDVSST 65 (238)
T ss_pred cCCcEEEEECCCchH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------CCeEEEECCCCCH
Confidence 468899999997554 444443 3789999999876665554433321 2466777888765
No 349
>PRK05876 short chain dehydrogenase; Provisional
Probab=61.53 E-value=48 Score=30.41 Aligned_cols=61 Identities=20% Similarity=0.190 Sum_probs=40.5
Q ss_pred CCCCCeEEEEcCccCHHHHHHH----HhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 118 DFNGIISLELGAGTGLAGILLS----RVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~la----~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
.++|++||=.|++.|+ |..++ +.|.+|+++|.++.-++.+...+... ..++.+...|..+.
T Consensus 3 ~~~~k~vlVTGas~gI-G~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~------~~~~~~~~~Dv~d~ 67 (275)
T PRK05876 3 GFPGRGAVITGGASGI-GLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAE------GFDVHGVMCDVRHR 67 (275)
T ss_pred CcCCCEEEEeCCCchH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCeEEEEeCCCCCH
Confidence 3788999999998765 44433 34889999999876665554444322 23566677777664
No 350
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=61.39 E-value=87 Score=26.93 Aligned_cols=107 Identities=13% Similarity=0.084 Sum_probs=67.4
Q ss_pred hHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHH-HHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEe
Q 019839 101 AELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILL-SRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRD 179 (335)
Q Consensus 101 aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~l-a~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ 179 (335)
.+..|++.+.+.. ..+.+|+=|||=+-...+.- ...+.++++-|++.. ...- .++ .+.-
T Consensus 11 T~~~l~~~l~~~~-----~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~R--------F~~~------~~~-~F~f 70 (162)
T PF10237_consen 11 TAEFLARELLDGA-----LDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRR--------FEQF------GGD-EFVF 70 (162)
T ss_pred HHHHHHHHHHHhc-----CCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecch--------HHhc------CCc-ceEE
Confidence 3567777776642 35679999988776666555 222568999999841 1111 122 3455
Q ss_pred ccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCc
Q 019839 180 LNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSK 246 (335)
Q Consensus 180 ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~ 246 (335)
.|...+..-. ....++||+||+=--+...+.......|++.|++++++
T Consensus 71 yD~~~p~~~~-------------------~~l~~~~d~vv~DPPFl~~ec~~k~a~ti~~L~k~~~k 118 (162)
T PF10237_consen 71 YDYNEPEELP-------------------EELKGKFDVVVIDPPFLSEECLTKTAETIRLLLKPGGK 118 (162)
T ss_pred CCCCChhhhh-------------------hhcCCCceEEEECCCCCCHHHHHHHHHHHHHHhCccce
Confidence 6655542110 01235899999966666666777788999999998553
No 351
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=61.25 E-value=44 Score=29.60 Aligned_cols=58 Identities=24% Similarity=0.239 Sum_probs=37.8
Q ss_pred CCeEEEEcCccCHHHHHHHHh----CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 121 GIISLELGAGTGLAGILLSRV----AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 121 g~~VLELG~GtGL~gl~la~~----~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
+++||=.|++.| +|..+++. |.+|++++.++.-.+.+...+..+ ..++.+...|+.+.
T Consensus 1 ~~~vlItGa~g~-lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~ 62 (255)
T TIGR01963 1 GKTALVTGAASG-IGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDA------GGSVIYLVADVTKE 62 (255)
T ss_pred CCEEEEcCCcch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCceEEEECCCCCH
Confidence 357888886544 45554433 789999999876665555444332 24577788888775
No 352
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=61.22 E-value=31 Score=32.93 Aligned_cols=43 Identities=19% Similarity=0.050 Sum_probs=33.1
Q ss_pred CCCCCCeEEEEcC-c-cCHHHHHHHHh-CCEEEEecCchHHHHHHH
Q 019839 117 SDFNGIISLELGA-G-TGLAGILLSRV-AWTVFLTDHGNYILDNCA 159 (335)
Q Consensus 117 ~~~~g~~VLELG~-G-tGL~gl~la~~-~~~V~~TD~~~~~l~~~~ 159 (335)
...+|.+||=.|+ | +|...+.+|+. |.+|++|+.+++-++.++
T Consensus 155 ~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~ 200 (348)
T PLN03154 155 SPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLK 200 (348)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH
Confidence 3457899999998 3 77777777776 789999998876666654
No 353
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=61.03 E-value=59 Score=30.47 Aligned_cols=34 Identities=24% Similarity=0.238 Sum_probs=23.6
Q ss_pred CCCCCeEEEEcCccCHHH-HH--HHHhCC-EEEEecCch
Q 019839 118 DFNGIISLELGAGTGLAG-IL--LSRVAW-TVFLTDHGN 152 (335)
Q Consensus 118 ~~~g~~VLELG~GtGL~g-l~--la~~~~-~V~~TD~~~ 152 (335)
.+++++||=+||| |..- ++ ++..|. +|+..+.++
T Consensus 123 ~~~~k~vlI~GAG-GagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 123 DVKGKKLTVIGAG-GAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CcCCCEEEEECCc-HHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 4688999999998 5332 22 234465 599999885
No 354
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=61.01 E-value=15 Score=35.01 Aligned_cols=40 Identities=20% Similarity=0.311 Sum_probs=34.3
Q ss_pred EEEEcCccCHHHHHHHHhCCE-EEEecCchHHHHHHHHHHH
Q 019839 124 SLELGAGTGLAGILLSRVAWT-VFLTDHGNYILDNCAKNVQ 163 (335)
Q Consensus 124 VLELG~GtGL~gl~la~~~~~-V~~TD~~~~~l~~~~~Nv~ 163 (335)
|+||=||.|-.++.+-..|.+ |.+.|+++.+.+..+.|..
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~ 41 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFG 41 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCC
Confidence 689999999999999888876 4679999999998888863
No 355
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=60.88 E-value=15 Score=35.23 Aligned_cols=43 Identities=19% Similarity=0.141 Sum_probs=31.4
Q ss_pred CCCCCCeEEEEcCc-cCHHHHHHHHh-CC-EEEEecCchHHHHHHH
Q 019839 117 SDFNGIISLELGAG-TGLAGILLSRV-AW-TVFLTDHGNYILDNCA 159 (335)
Q Consensus 117 ~~~~g~~VLELG~G-tGL~gl~la~~-~~-~V~~TD~~~~~l~~~~ 159 (335)
....|.+||=.||| .|+..+.+|+. |. +|+++|.++.-++.++
T Consensus 173 ~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~ 218 (358)
T TIGR03451 173 GVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAR 218 (358)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH
Confidence 34578999999876 46666666665 65 5999999887666664
No 356
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=60.81 E-value=1.1e+02 Score=29.58 Aligned_cols=111 Identities=18% Similarity=0.135 Sum_probs=68.5
Q ss_pred hHHHHHHHHHhhcCCC-------CCCCCCeEEEEcCccCHHHHHHHHh----CCEEEEecCchHHHHHHHHHHHHccCCC
Q 019839 101 AELVLADFVMHKMCTS-------SDFNGIISLELGAGTGLAGILLSRV----AWTVFLTDHGNYILDNCAKNVQLNSGVF 169 (335)
Q Consensus 101 aa~~La~~l~~~~~~~-------~~~~g~~VLELG~GtGL~gl~la~~----~~~V~~TD~~~~~l~~~~~Nv~~N~~~~ 169 (335)
++..-+.|+.+...+. +-+...+|.=||-| .+|.-+|+. |++|+..|.+.+=|..+..-.
T Consensus 141 a~q~Ga~~lek~~GG~GvllgGvpGV~~~kv~iiGGG--vvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f------- 211 (371)
T COG0686 141 AAQAGAYYLEKTNGGKGVLLGGVPGVLPAKVVVLGGG--VVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLF------- 211 (371)
T ss_pred HHHHHHHHHHhccCCceeEecCCCCCCCccEEEECCc--cccchHHHHHhccCCeeEEEecCHHHHhhhhHhh-------
Confidence 6667777776653211 12344567778766 334444443 789999999976555544321
Q ss_pred CCCCeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCC
Q 019839 170 SHQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGS 245 (335)
Q Consensus 170 ~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~ 245 (335)
..++.++.-.-.+- .+...+.|+||++=.|--...+....+.+-+.|+||+
T Consensus 212 --~~rv~~~~st~~~i-----------------------ee~v~~aDlvIgaVLIpgakaPkLvt~e~vk~MkpGs 262 (371)
T COG0686 212 --GGRVHTLYSTPSNI-----------------------EEAVKKADLVIGAVLIPGAKAPKLVTREMVKQMKPGS 262 (371)
T ss_pred --CceeEEEEcCHHHH-----------------------HHHhhhccEEEEEEEecCCCCceehhHHHHHhcCCCc
Confidence 23444432221110 1234589999999888777777778888888899876
No 357
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=59.94 E-value=43 Score=31.14 Aligned_cols=45 Identities=24% Similarity=0.217 Sum_probs=29.7
Q ss_pred CCCCCeEEEEcCc-cCHHH-HHHHHhC-CEEEEecCchHHHHHHHHHH
Q 019839 118 DFNGIISLELGAG-TGLAG-ILLSRVA-WTVFLTDHGNYILDNCAKNV 162 (335)
Q Consensus 118 ~~~g~~VLELG~G-tGL~g-l~la~~~-~~V~~TD~~~~~l~~~~~Nv 162 (335)
.+++++||=+|+| +|..- -.++..| ++|+..+.+.+-.+.+...+
T Consensus 120 ~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~ 167 (278)
T PRK00258 120 DLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLF 167 (278)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHh
Confidence 5788999999997 23221 1223346 79999999976555555444
No 358
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=59.93 E-value=31 Score=31.02 Aligned_cols=34 Identities=26% Similarity=0.261 Sum_probs=24.5
Q ss_pred CCCCeEEEEcCc-cC-HHHHHHHHhC-CEEEEecCch
Q 019839 119 FNGIISLELGAG-TG-LAGILLSRVA-WTVFLTDHGN 152 (335)
Q Consensus 119 ~~g~~VLELG~G-tG-L~gl~la~~~-~~V~~TD~~~ 152 (335)
+++++|+=+||| +| -+...+++.| .++++.|.+.
T Consensus 19 L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 19 LKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 677899999999 44 4445566666 5888887763
No 359
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=59.86 E-value=40 Score=29.83 Aligned_cols=35 Identities=26% Similarity=0.364 Sum_probs=26.0
Q ss_pred CCCCCeEEEEcCc-cC-HHHHHHHHhC-CEEEEecCch
Q 019839 118 DFNGIISLELGAG-TG-LAGILLSRVA-WTVFLTDHGN 152 (335)
Q Consensus 118 ~~~g~~VLELG~G-tG-L~gl~la~~~-~~V~~TD~~~ 152 (335)
.+++++||=+||| .| .+...+++.| .++++.|.+.
T Consensus 18 kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 18 RLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred HhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 3688899999999 34 4455566666 5899999873
No 360
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=59.81 E-value=55 Score=29.53 Aligned_cols=62 Identities=16% Similarity=0.162 Sum_probs=42.4
Q ss_pred CCCCCeEEEEcCccCHHHHH---HHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 118 DFNGIISLELGAGTGLAGIL---LSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~---la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
.++++++|=.|++.|+-.-+ ++..|.+|++++.+++-++.+..++... ..++.+...|..+.
T Consensus 7 ~~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~------~~~~~~~~~Dl~~~ 71 (265)
T PRK07097 7 SLKGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYREL------GIEAHGYVCDVTDE 71 (265)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhc------CCceEEEEcCCCCH
Confidence 46889999999987763322 3334889999999876666665555432 23567777777654
No 361
>PRK07774 short chain dehydrogenase; Provisional
Probab=59.22 E-value=62 Score=28.64 Aligned_cols=60 Identities=18% Similarity=0.275 Sum_probs=37.8
Q ss_pred CCCCeEEEEcCccCHHHHHHHH----hCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 119 FNGIISLELGAGTGLAGILLSR----VAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~la~----~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
+++++||=.|+. |.+|..+++ .|.+|++++.++.-++.+...+... ...+.....|..+.
T Consensus 4 ~~~k~vlItGas-g~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dl~~~ 67 (250)
T PRK07774 4 FDDKVAIVTGAA-GGIGQAYAEALAREGASVVVADINAEGAERVAKQIVAD------GGTAIAVQVDVSDP 67 (250)
T ss_pred cCCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCcEEEEEcCCCCH
Confidence 578899999954 444655554 3789999999875555554444321 13455566666554
No 362
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=59.19 E-value=62 Score=28.72 Aligned_cols=60 Identities=17% Similarity=0.206 Sum_probs=40.9
Q ss_pred CCCCeEEEEcCccCHHHHHHHHh----CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 119 FNGIISLELGAGTGLAGILLSRV----AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~la~~----~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
+++++||=.|+. |-+|..+++. |.+|++++.++.-++.+...+... ..++.+...|..+.
T Consensus 2 ~~~~~vlItG~s-g~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dl~~~ 65 (258)
T PRK12429 2 LKGKVALVTGAA-SGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKA------GGKAIGVAMDVTDE 65 (258)
T ss_pred CCCCEEEEECCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhc------CCcEEEEEcCCCCH
Confidence 467889988874 5556665554 789999999877666555555432 24577777777654
No 363
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=59.11 E-value=15 Score=36.63 Aligned_cols=37 Identities=16% Similarity=0.125 Sum_probs=26.3
Q ss_pred CCCCCeEEEEcCc-cCHHHHHHH-HhCCEEEEecCchHH
Q 019839 118 DFNGIISLELGAG-TGLAGILLS-RVAWTVFLTDHGNYI 154 (335)
Q Consensus 118 ~~~g~~VLELG~G-tGL~gl~la-~~~~~V~~TD~~~~~ 154 (335)
.+.|++|+=+|+| .|......+ ..|++|+++|.++.-
T Consensus 209 ~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~r 247 (425)
T PRK05476 209 LIAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPIC 247 (425)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchh
Confidence 4689999999998 453333223 337899999998743
No 364
>PRK07454 short chain dehydrogenase; Provisional
Probab=59.09 E-value=58 Score=28.77 Aligned_cols=59 Identities=17% Similarity=0.193 Sum_probs=38.3
Q ss_pred CCCeEEEEcCccCHHHHHHHHh----CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 120 NGIISLELGAGTGLAGILLSRV----AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 120 ~g~~VLELG~GtGL~gl~la~~----~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
+++++|=.|+ +|.+|..+++. |.+|++++.++.-++.+...+... ..++.+...|..+.
T Consensus 5 ~~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~ 67 (241)
T PRK07454 5 SMPRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELRST------GVKAAAYSIDLSNP 67 (241)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhC------CCcEEEEEccCCCH
Confidence 4578899996 55556555543 789999999876555544443321 24566777777664
No 365
>PRK07063 short chain dehydrogenase; Provisional
Probab=58.89 E-value=64 Score=28.91 Aligned_cols=63 Identities=19% Similarity=0.279 Sum_probs=42.2
Q ss_pred CCCCCeEEEEcCccCHHHHHHH----HhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 118 DFNGIISLELGAGTGLAGILLS----RVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~la----~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
.+++++||=.|++.|+ |..++ +.|++|+++|.++.-++.+...+..... ..++.+...|..+.
T Consensus 4 ~l~~k~vlVtGas~gI-G~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~----~~~~~~~~~Dl~~~ 70 (260)
T PRK07063 4 RLAGKVALVTGAAQGI-GAAIARAFAREGAAVALADLDAALAERAAAAIARDVA----GARVLAVPADVTDA 70 (260)
T ss_pred ccCCCEEEEECCCchH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccC----CceEEEEEccCCCH
Confidence 3678999999987664 44433 3488999999987766666555543111 34577777777664
No 366
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=58.52 E-value=25 Score=37.50 Aligned_cols=43 Identities=19% Similarity=0.060 Sum_probs=32.3
Q ss_pred CeEEEEcCccC--HHHHHHHHhCCEEEEecCchHHHHHHHHHHHH
Q 019839 122 IISLELGAGTG--LAGILLSRVAWTVFLTDHGNYILDNCAKNVQL 164 (335)
Q Consensus 122 ~~VLELG~GtG--L~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~ 164 (335)
++|-=||+|+= -.+..+|..|..|++.|.+++.++.....+..
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~ 358 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAK 358 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 47889999963 33444666799999999999988876665544
No 367
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=58.24 E-value=67 Score=29.85 Aligned_cols=66 Identities=18% Similarity=0.242 Sum_probs=47.9
Q ss_pred CCCCCCeEEEEcCccCH---HHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 117 SDFNGIISLELGAGTGL---AGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 117 ~~~~g~~VLELG~GtGL---~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
..+.|+.+|-=|+..|+ +...+|+.|++|+.++.+++-++.++.-+...... ..++.....|-.+.
T Consensus 4 ~~l~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~~---~~~~~~~~~Dv~~~ 72 (270)
T KOG0725|consen 4 GRLAGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLGYT---GGKVLAIVCDVSKE 72 (270)
T ss_pred ccCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCC---CCeeEEEECcCCCH
Confidence 45899999999999885 34567777999999999988887776665543321 34566666665543
No 368
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=58.17 E-value=19 Score=34.37 Aligned_cols=41 Identities=32% Similarity=0.461 Sum_probs=28.9
Q ss_pred CCCCeEEEEcCc-cCHHHHHHHHh-CCEEEEecC---chHHHHHHH
Q 019839 119 FNGIISLELGAG-TGLAGILLSRV-AWTVFLTDH---GNYILDNCA 159 (335)
Q Consensus 119 ~~g~~VLELG~G-tGL~gl~la~~-~~~V~~TD~---~~~~l~~~~ 159 (335)
..|.+||=.|+| .|+..+.+|+. |.+|++++. ++.-++.++
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~ 216 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVE 216 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHH
Confidence 478899999987 46666666665 679999987 444444443
No 369
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=57.86 E-value=66 Score=28.42 Aligned_cols=60 Identities=15% Similarity=0.192 Sum_probs=39.6
Q ss_pred CCCCeEEEEcCccCHHHHHHHH----hCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 119 FNGIISLELGAGTGLAGILLSR----VAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~la~----~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
+++++||=.|++.| +|..+++ .|.+|++++.+......+...+... ..++.+...|..+.
T Consensus 1 ~~~~~ilItGas~~-iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~d~~~~ 64 (250)
T TIGR03206 1 LKDKTAIVTGGGGG-IGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAK------GGNAQAFACDITDR 64 (250)
T ss_pred CCCCEEEEeCCCCh-HHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhc------CCcEEEEEcCCCCH
Confidence 36789999997654 4444443 3789999999876666555555432 24567777776654
No 370
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=57.44 E-value=66 Score=28.71 Aligned_cols=60 Identities=17% Similarity=0.225 Sum_probs=39.9
Q ss_pred CCCCeEEEEcCccCHHHHHHH----HhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 119 FNGIISLELGAGTGLAGILLS----RVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~la----~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
++++++|=.|++.|+ |..++ +.|.+|+++|.++.-++.+...+... ..++.....|..+.
T Consensus 7 l~~k~~lItGas~gi-G~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~------~~~~~~~~~Dl~~~ 70 (254)
T PRK08085 7 LAGKNILITGSAQGI-GFLLATGLAEYGAEIIINDITAERAELAVAKLRQE------GIKAHAAPFNVTHK 70 (254)
T ss_pred CCCCEEEEECCCChH-HHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhc------CCeEEEEecCCCCH
Confidence 578999999987664 43333 33789999999876665555444332 23456667777664
No 371
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=56.90 E-value=21 Score=34.36 Aligned_cols=42 Identities=19% Similarity=0.103 Sum_probs=30.2
Q ss_pred CCCCCeEEEEcCc-cCHHHHHHHHh-CC-EEEEecCchHHHHHHH
Q 019839 118 DFNGIISLELGAG-TGLAGILLSRV-AW-TVFLTDHGNYILDNCA 159 (335)
Q Consensus 118 ~~~g~~VLELG~G-tGL~gl~la~~-~~-~V~~TD~~~~~l~~~~ 159 (335)
...|.+||=+|+| .|+..+.+|+. |. +|+++|.+++-++.++
T Consensus 184 ~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~ 228 (368)
T cd08300 184 VEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAK 228 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH
Confidence 4578999999876 45555555555 66 7999999987666654
No 372
>PRK07035 short chain dehydrogenase; Provisional
Probab=56.73 E-value=69 Score=28.50 Aligned_cols=62 Identities=18% Similarity=0.193 Sum_probs=40.2
Q ss_pred CCCCCeEEEEcCccCHHHHH---HHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 118 DFNGIISLELGAGTGLAGIL---LSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~---la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
.+++++||=.|++.|+-.-+ +++.|.+|++++.++.-++.+...+... ..++.....|..+.
T Consensus 5 ~l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~ 69 (252)
T PRK07035 5 DLTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAA------GGKAEALACHIGEM 69 (252)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCeEEEEEcCCCCH
Confidence 36789999999887753322 3334889999999876665555544322 23455666676654
No 373
>PRK01220 malonate decarboxylase subunit delta; Provisional
Probab=56.44 E-value=54 Score=25.84 Aligned_cols=75 Identities=16% Similarity=0.287 Sum_probs=50.8
Q ss_pred ccccccCCCCeeeeccCCCCCCceeEEEecccccCCCCccceeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHH
Q 019839 56 EVLTLDDDGDLVLPRRSKQSTRCFNVTIQHNITSLIPSVGLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAG 135 (335)
Q Consensus 56 ~~~~~d~dgdl~v~r~~~~~~~~~~i~i~~~~~~~~~~~G~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~g 135 (335)
-.+.+-..|||.|-..+. ......|.|..+. . .-..+|.+ +|.+|...+. ..--...|=|.||=.|.++
T Consensus 18 ~lvGVVGSGdLEVL~ep~-~~~~~~v~I~Tsv----~-Gf~~~Wqa--vl~rf~~~~~---~~~~~i~InD~GATP~VV~ 86 (99)
T PRK01220 18 ALVGVVGSGDLEVLLEPG-DAGKLSIQVVTSV----N-GSAARWKA--LFERFFTAQT---PPAANIDIHDFGATPGVVR 86 (99)
T ss_pred EEEEEEccCceEEEEEcC-CCCcEEEEEEecc----c-CcHHHHHH--HHHHHHhhCC---CCccEEEEeCCCCCcHhhh
Confidence 455788999999986665 4445566666443 2 34589987 6888887652 1111235778899999999
Q ss_pred HHHHHh
Q 019839 136 ILLSRV 141 (335)
Q Consensus 136 l~la~~ 141 (335)
|-+.+.
T Consensus 87 LRL~QA 92 (99)
T PRK01220 87 LRLEQA 92 (99)
T ss_pred hHHHHH
Confidence 988764
No 374
>PRK07890 short chain dehydrogenase; Provisional
Probab=56.07 E-value=74 Score=28.30 Aligned_cols=60 Identities=22% Similarity=0.257 Sum_probs=39.3
Q ss_pred CCCCeEEEEcCccCHHHHHH----HHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 119 FNGIISLELGAGTGLAGILL----SRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~l----a~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
..+++||=.|++.|+ |..+ +..|.+|++++.++.-++.+...+... ..++.....|..+.
T Consensus 3 l~~k~vlItGa~~~I-G~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~ 66 (258)
T PRK07890 3 LKGKVVVVSGVGPGL-GRTLAVRAARAGADVVLAARTAERLDEVAAEIDDL------GRRALAVPTDITDE 66 (258)
T ss_pred cCCCEEEEECCCCcH-HHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHh------CCceEEEecCCCCH
Confidence 467899999987664 3333 334889999999876555555444332 23566777776654
No 375
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=56.05 E-value=66 Score=28.51 Aligned_cols=33 Identities=15% Similarity=0.186 Sum_probs=21.9
Q ss_pred CCCCCeEEEEcCc-cCHHH-HHHHHhCCEEEEecC
Q 019839 118 DFNGIISLELGAG-TGLAG-ILLSRVAWTVFLTDH 150 (335)
Q Consensus 118 ~~~g~~VLELG~G-tGL~g-l~la~~~~~V~~TD~ 150 (335)
.++|++||=+|+| .|.-- -.+...|++|+..+-
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~ 41 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISP 41 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcC
Confidence 3689999999988 34322 234445788887753
No 376
>PRK07326 short chain dehydrogenase; Provisional
Probab=55.95 E-value=62 Score=28.38 Aligned_cols=59 Identities=17% Similarity=0.244 Sum_probs=37.6
Q ss_pred CCCCeEEEEcCccCHHHHHHHH----hCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 119 FNGIISLELGAGTGLAGILLSR----VAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~la~----~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
+.+++||=.|+ +|-+|..+++ .|.+|++++.++.-+..+...+... ..+.+...|..+.
T Consensus 4 ~~~~~ilItGa-tg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~-------~~~~~~~~D~~~~ 66 (237)
T PRK07326 4 LKGKVALITGG-SKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK-------GNVLGLAADVRDE 66 (237)
T ss_pred CCCCEEEEECC-CCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc-------CcEEEEEccCCCH
Confidence 46789999996 4545555544 3789999999876555554444321 3466667776553
No 377
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=55.82 E-value=79 Score=28.25 Aligned_cols=62 Identities=15% Similarity=0.235 Sum_probs=39.9
Q ss_pred CCCCCeEEEEcCccCHHHHHH---HHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 118 DFNGIISLELGAGTGLAGILL---SRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~l---a~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
.+.+++||=.|++.|+-.-++ +..|++|++++.+...++.+...+..- ..++.+...|..+.
T Consensus 8 ~l~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~------~~~~~~~~~D~~~~ 72 (255)
T PRK06113 8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQL------GGQAFACRCDITSE 72 (255)
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhc------CCcEEEEEccCCCH
Confidence 467999999998766543332 333789999998876665554444321 23466667776654
No 378
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=55.80 E-value=44 Score=28.81 Aligned_cols=36 Identities=19% Similarity=0.173 Sum_probs=20.9
Q ss_pred CCCCCCeEEEEcCc-cCH-HHHHHHHhCCEEEEecCch
Q 019839 117 SDFNGIISLELGAG-TGL-AGILLSRVAWTVFLTDHGN 152 (335)
Q Consensus 117 ~~~~g~~VLELG~G-tGL-~gl~la~~~~~V~~TD~~~ 152 (335)
-.+.||+++=+|-| +|- ++-.+...|++|+.+|.+|
T Consensus 19 ~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP 56 (162)
T PF00670_consen 19 LMLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDP 56 (162)
T ss_dssp S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred eeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence 45899999999877 342 2222333489999999998
No 379
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=55.76 E-value=1.1e+02 Score=27.34 Aligned_cols=34 Identities=24% Similarity=0.222 Sum_probs=25.5
Q ss_pred CCCCCeEEEEcCc-cC-HHHHHHHHhC-CEEEEecCc
Q 019839 118 DFNGIISLELGAG-TG-LAGILLSRVA-WTVFLTDHG 151 (335)
Q Consensus 118 ~~~g~~VLELG~G-tG-L~gl~la~~~-~~V~~TD~~ 151 (335)
.++..+|+=+||| +| -+...+++.| .++++.|.+
T Consensus 25 ~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 25 KLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred HHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 3678899999998 45 4455566666 479999987
No 380
>PRK07062 short chain dehydrogenase; Provisional
Probab=55.63 E-value=78 Score=28.45 Aligned_cols=64 Identities=9% Similarity=0.142 Sum_probs=41.4
Q ss_pred CCCCCeEEEEcCccCHHHHH---HHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 118 DFNGIISLELGAGTGLAGIL---LSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~---la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
.++|+++|=.|++.|+-.-+ ++..|.+|++++.+++-++.+...+..... ..++.+...|..+.
T Consensus 5 ~l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~ 71 (265)
T PRK07062 5 QLEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFP----GARLLAARCDVLDE 71 (265)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCC----CceEEEEEecCCCH
Confidence 46889999999877653322 233488999999997666655544433211 23566777777664
No 381
>PRK02103 malonate decarboxylase subunit delta; Provisional
Probab=55.49 E-value=55 Score=26.11 Aligned_cols=75 Identities=23% Similarity=0.232 Sum_probs=51.4
Q ss_pred cccccccCCCCeeeeccCCCCCCceeEEEecccccCCCCccceeehhHHHHHHHHHhhcCCCCCCCC--CeEEEEcCccC
Q 019839 55 REVLTLDDDGDLVLPRRSKQSTRCFNVTIQHNITSLIPSVGLQVWKAELVLADFVMHKMCTSSDFNG--IISLELGAGTG 132 (335)
Q Consensus 55 ~~~~~~d~dgdl~v~r~~~~~~~~~~i~i~~~~~~~~~~~G~~vW~aa~~La~~l~~~~~~~~~~~g--~~VLELG~GtG 132 (335)
.-.+.+-..|||.|-..+........|.|..+. . ....+|.+ ++.+|...+. ..+ ..|=|.||=.|
T Consensus 20 ~~lvGVVgSGdLEVL~ep~~~~~~~~v~I~Tsv----~-Gf~~~Wqa--Vl~~f~~r~~-----~~~~~i~InD~GATP~ 87 (105)
T PRK02103 20 AALVGVVASGNLEVLVERVLPGGECEVEIRTAA----V-GFGAVWQA--VVADFVERRS-----PGGLRISINDGGARPD 87 (105)
T ss_pred ceEEEEEccCceEEEEeccCCCCeEEEEEEecc----c-CcHHHHHH--HHHHHHhhCC-----CCccEEEEeCCCCCch
Confidence 345678899999998665543344556665443 2 34589987 6888887652 222 35778899999
Q ss_pred HHHHHHHHh
Q 019839 133 LAGILLSRV 141 (335)
Q Consensus 133 L~gl~la~~ 141 (335)
.++|-+.+.
T Consensus 88 VV~LRL~QA 96 (105)
T PRK02103 88 TVSLRLAQA 96 (105)
T ss_pred hhhhHHHHH
Confidence 999988764
No 382
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=55.41 E-value=22 Score=35.97 Aligned_cols=40 Identities=28% Similarity=0.199 Sum_probs=28.7
Q ss_pred CCCCCCeEEEEcCc-cCHHHHHHH-HhCCEEEEecCchHHHH
Q 019839 117 SDFNGIISLELGAG-TGLAGILLS-RVAWTVFLTDHGNYILD 156 (335)
Q Consensus 117 ~~~~g~~VLELG~G-tGL~gl~la-~~~~~V~~TD~~~~~l~ 156 (335)
..+.|++|+=+|.| +|+..+.++ ..|++|+++|..+..++
T Consensus 8 ~~~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~ 49 (488)
T PRK03369 8 PLLPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALR 49 (488)
T ss_pred cccCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHH
Confidence 34678999999988 566555433 34899999998765443
No 383
>COG3392 Adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=54.83 E-value=23 Score=33.05 Aligned_cols=63 Identities=21% Similarity=0.249 Sum_probs=44.4
Q ss_pred HHHHHHHHhhcC--CCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHcc
Q 019839 103 LVLADFVMHKMC--TSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNS 166 (335)
Q Consensus 103 ~~La~~l~~~~~--~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~ 166 (335)
..|-.||..... ...+.+|+.+.||=+|||++|-.+-+.|..|++-|+.. ---++-.|.-.|.
T Consensus 8 ~~LlsFi~~~i~~~~k~~~s~k~f~DiFaGtGVV~~~fkk~~n~iiaNDle~-ysylln~~yi~N~ 72 (330)
T COG3392 8 YKLLSFIKENIHEVKKEDLSGKIFCDIFAGTGVVGRFFKKAGNKIIANDLEY-YSYLLNQNYIGNI 72 (330)
T ss_pred HHHHHHHHHHHHHHhhcccCCCeeeeeccCccHHHHHHHHhcchhhhchHHH-HHHHHHHHHhhcc
Confidence 445566655432 23567899999999999999999999999999999862 2233334444443
No 384
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=54.79 E-value=57 Score=29.02 Aligned_cols=33 Identities=21% Similarity=0.284 Sum_probs=22.3
Q ss_pred CCCCeEEEEcCcc-CHHH-HHHHHhCCEEEEecCc
Q 019839 119 FNGIISLELGAGT-GLAG-ILLSRVAWTVFLTDHG 151 (335)
Q Consensus 119 ~~g~~VLELG~Gt-GL~g-l~la~~~~~V~~TD~~ 151 (335)
++|++||=+|.|. |.-- -.+...|++|+..+-.
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~ 41 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEE 41 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 6899999999883 4332 2334458888777654
No 385
>PRK07411 hypothetical protein; Validated
Probab=54.73 E-value=11 Score=37.22 Aligned_cols=43 Identities=16% Similarity=0.162 Sum_probs=29.1
Q ss_pred CCCCeEEEEcCc-cC-HHHHHHHHhC-CEEEEecCchHHHHHHHHH
Q 019839 119 FNGIISLELGAG-TG-LAGILLSRVA-WTVFLTDHGNYILDNCAKN 161 (335)
Q Consensus 119 ~~g~~VLELG~G-tG-L~gl~la~~~-~~V~~TD~~~~~l~~~~~N 161 (335)
++..+||=+||| .| -+...+++.| .++++.|.+.--+.++.++
T Consensus 36 L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ 81 (390)
T PRK07411 36 LKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQ 81 (390)
T ss_pred HhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcC
Confidence 677899999999 45 4555666666 5889988874333444333
No 386
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=54.64 E-value=16 Score=35.92 Aligned_cols=33 Identities=21% Similarity=0.433 Sum_probs=23.8
Q ss_pred CCCeEEEEcCccCHHHHHHHHh------------C-----CEEEEecCch
Q 019839 120 NGIISLELGAGTGLAGILLSRV------------A-----WTVFLTDHGN 152 (335)
Q Consensus 120 ~g~~VLELG~GtGL~gl~la~~------------~-----~~V~~TD~~~ 152 (335)
+..+|+|||||+|..++.+... + -+|+..|+..
T Consensus 63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~ 112 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPS 112 (386)
T ss_pred cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCC
Confidence 3568999999999877665322 1 3688888863
No 387
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=54.54 E-value=74 Score=28.49 Aligned_cols=61 Identities=20% Similarity=0.379 Sum_probs=37.9
Q ss_pred CCCCCeEEEEcCccCHHHHH---HHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 118 DFNGIISLELGAGTGLAGIL---LSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~---la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
.++|++||=.|++.|+-.-+ +++.|++|++++.+ .-++.+...+... ..++.+...|..+.
T Consensus 12 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~-~~~~~~~~~~~~~------~~~~~~~~~D~~~~ 75 (258)
T PRK06935 12 SLDGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHG-TNWDETRRLIEKE------GRKVTFVQVDLTKP 75 (258)
T ss_pred cCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC-cHHHHHHHHHHhc------CCceEEEEcCCCCH
Confidence 46899999999987753333 23448899999887 3333333333221 23566677776654
No 388
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=54.32 E-value=21 Score=34.82 Aligned_cols=57 Identities=18% Similarity=0.180 Sum_probs=35.5
Q ss_pred CCccceeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCc-cCH-HHHHHHHhCCEEEEecCch-HHHHH
Q 019839 92 PSVGLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAG-TGL-AGILLSRVAWTVFLTDHGN-YILDN 157 (335)
Q Consensus 92 ~~~G~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~G-tGL-~gl~la~~~~~V~~TD~~~-~~l~~ 157 (335)
.++|..+|++-.--.+ -.+.||.|+=.|-| +|- ++..+...|++|+.|+++| .+|+.
T Consensus 189 YGtgqS~~DgI~RaTn---------~liaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA 248 (420)
T COG0499 189 YGTGQSLLDGILRATN---------VLLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEA 248 (420)
T ss_pred cccchhHHHHHHhhhc---------eeecCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHH
Confidence 4555566655322222 35799999998877 553 2233333489999999998 44433
No 389
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=54.25 E-value=24 Score=33.82 Aligned_cols=43 Identities=19% Similarity=0.148 Sum_probs=30.4
Q ss_pred CCCCCCeEEEEcCc-cCHHHHHHHHh-CC-EEEEecCchHHHHHHH
Q 019839 117 SDFNGIISLELGAG-TGLAGILLSRV-AW-TVFLTDHGNYILDNCA 159 (335)
Q Consensus 117 ~~~~g~~VLELG~G-tGL~gl~la~~-~~-~V~~TD~~~~~l~~~~ 159 (335)
...+|.+||=.|+| .|+..+.+|+. |. +|+++|.+++-++.++
T Consensus 184 ~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~ 229 (369)
T cd08301 184 KVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAK 229 (369)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH
Confidence 34578999999875 45555555554 65 8999999987666664
No 390
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=54.11 E-value=44 Score=32.85 Aligned_cols=61 Identities=10% Similarity=-0.074 Sum_probs=44.3
Q ss_pred cceeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCc-cCHHHHHHHHhCCEEEEecCchHHHHHHHHHHH
Q 019839 95 GLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAG-TGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQ 163 (335)
Q Consensus 95 G~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~G-tGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~ 163 (335)
=.++|+.+.+.-+.| ..-++.+||=|.+| +-.+++ ++...++|++.|+||.-+.+++-.+.
T Consensus 17 Y~~~WEDp~vD~~aL-------~i~~~d~vl~ItSaG~N~L~y-L~~~P~~I~aVDlNp~Q~aLleLKlA 78 (380)
T PF11899_consen 17 YAQCWEDPRVDMEAL-------NIGPDDRVLTITSAGCNALDY-LLAGPKRIHAVDLNPAQNALLELKLA 78 (380)
T ss_pred eccccCCcHHHHHHh-------CCCCCCeEEEEccCCchHHHH-HhcCCceEEEEeCCHHHHHHHHHHHH
Confidence 358899998888877 44577899999554 455555 44445899999999977777765543
No 391
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=54.10 E-value=37 Score=31.65 Aligned_cols=42 Identities=21% Similarity=0.204 Sum_probs=27.1
Q ss_pred CeEEEEcCcc-C-HHHHHHHHhCCEEEEecCchHHHHHHHHHHH
Q 019839 122 IISLELGAGT-G-LAGILLSRVAWTVFLTDHGNYILDNCAKNVQ 163 (335)
Q Consensus 122 ~~VLELG~Gt-G-L~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~ 163 (335)
++|-=||+|. | -.+..++..|.+|++.|.+++.++..+..+.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~ 48 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSIS 48 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHH
Confidence 4566677762 3 2223334457899999999888776655443
No 392
>PRK12939 short chain dehydrogenase; Provisional
Probab=53.89 E-value=90 Score=27.48 Aligned_cols=61 Identities=20% Similarity=0.196 Sum_probs=39.6
Q ss_pred CCCCCeEEEEcCccCHHHHHHHH----hCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 118 DFNGIISLELGAGTGLAGILLSR----VAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~la~----~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
.+++++||=.|++ |-+|..+++ .|.+|++++.+++-+..+...++.- ..++.+...|..+.
T Consensus 4 ~~~~~~vlItGa~-g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dl~~~ 68 (250)
T PRK12939 4 NLAGKRALVTGAA-RGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAA------GGRAHAIAADLADP 68 (250)
T ss_pred CCCCCEEEEeCCC-ChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc------CCcEEEEEccCCCH
Confidence 3678999988875 444555444 3789999998876565554444321 24577777777654
No 393
>PRK06139 short chain dehydrogenase; Provisional
Probab=53.87 E-value=63 Score=30.82 Aligned_cols=60 Identities=18% Similarity=0.276 Sum_probs=42.2
Q ss_pred CCCCeEEEEcCccCHHHHH----HHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 119 FNGIISLELGAGTGLAGIL----LSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~----la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
+++++||=.|++.|+ |.. +++.|++|++++.+++-++.+...+...+ ..+.+...|..+.
T Consensus 5 l~~k~vlITGAs~GI-G~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g------~~~~~~~~Dv~d~ 68 (330)
T PRK06139 5 LHGAVVVITGASSGI-GQATAEAFARRGARLVLAARDEEALQAVAEECRALG------AEVLVVPTDVTDA 68 (330)
T ss_pred CCCCEEEEcCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC------CcEEEEEeeCCCH
Confidence 678999999987664 333 33448899999999887777766665432 4566667776654
No 394
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=53.87 E-value=34 Score=31.98 Aligned_cols=47 Identities=15% Similarity=0.048 Sum_probs=29.2
Q ss_pred CCCCeEEEEcCc-cC-HHHHHHHHhC-CEEEEecCchHHHHHHHHHHHHc
Q 019839 119 FNGIISLELGAG-TG-LAGILLSRVA-WTVFLTDHGNYILDNCAKNVQLN 165 (335)
Q Consensus 119 ~~g~~VLELG~G-tG-L~gl~la~~~-~~V~~TD~~~~~l~~~~~Nv~~N 165 (335)
++..+||=+||| .| -+...++..| .+++..|.+.--+.++.+|+-.+
T Consensus 24 L~~SrVLVVG~GGLGsEVAKnLaLAGVGsItIvDdD~Ve~SNL~RQfl~~ 73 (287)
T PTZ00245 24 LMHTSVALHGVAGAAAEAAKNLVLAGVRAVAVADEGLVTDADVCTNYLMQ 73 (287)
T ss_pred HhhCeEEEECCCchHHHHHHHHHHcCCCeEEEecCCccchhhhccccccc
Confidence 577899999997 23 1222233334 58999998865555566555443
No 395
>PRK06194 hypothetical protein; Provisional
Probab=53.66 E-value=77 Score=28.86 Aligned_cols=60 Identities=18% Similarity=0.324 Sum_probs=38.3
Q ss_pred CCCCeEEEEcCccCHHHHHHH----HhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 119 FNGIISLELGAGTGLAGILLS----RVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~la----~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
+++++||=.|++.|+ |..++ +.|.+|+++|.++..++.+...+... ..++.+...|..+.
T Consensus 4 ~~~k~vlVtGasggI-G~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~d~ 67 (287)
T PRK06194 4 FAGKVAVITGAASGF-GLAFARIGAALGMKLVLADVQQDALDRAVAELRAQ------GAEVLGVRTDVSDA 67 (287)
T ss_pred CCCCEEEEeCCccHH-HHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhc------CCeEEEEECCCCCH
Confidence 568899988876554 44443 34889999999876555444433321 23566677776653
No 396
>PRK05866 short chain dehydrogenase; Provisional
Probab=53.57 E-value=75 Score=29.48 Aligned_cols=61 Identities=23% Similarity=0.263 Sum_probs=40.8
Q ss_pred CCCCCeEEEEcCccCHHHHHHH----HhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 118 DFNGIISLELGAGTGLAGILLS----RVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~la----~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
.+.+++||=.|++.|+ |..++ +.|.+|++++.+++.++.+...+... ...+.+...|..+.
T Consensus 37 ~~~~k~vlItGasggI-G~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~------~~~~~~~~~Dl~d~ 101 (293)
T PRK05866 37 DLTGKRILLTGASSGI-GEAAAEQFARRGATVVAVARREDLLDAVADRITRA------GGDAMAVPCDLSDL 101 (293)
T ss_pred CCCCCEEEEeCCCcHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc------CCcEEEEEccCCCH
Confidence 3678899999987665 44443 34789999999987776665555322 23456667776654
No 397
>PRK05854 short chain dehydrogenase; Provisional
Probab=53.45 E-value=85 Score=29.43 Aligned_cols=64 Identities=19% Similarity=0.257 Sum_probs=42.2
Q ss_pred CCCCCCeEEEEcCccCHHHHHHH----HhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 117 SDFNGIISLELGAGTGLAGILLS----RVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 117 ~~~~g~~VLELG~GtGL~gl~la----~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
..++|+++|=.|++.|+ |..++ +.|++|++++.+.+-++.+...+..... ..++.+..+|..+.
T Consensus 10 ~~l~gk~~lITGas~GI-G~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~----~~~v~~~~~Dl~d~ 77 (313)
T PRK05854 10 PDLSGKRAVVTGASDGL-GLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVP----DAKLSLRALDLSSL 77 (313)
T ss_pred cccCCCEEEEeCCCChH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCC----CCceEEEEecCCCH
Confidence 34689999999988765 44443 3488999999987655555444433221 24577778887664
No 398
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=52.70 E-value=34 Score=36.49 Aligned_cols=44 Identities=18% Similarity=0.057 Sum_probs=32.0
Q ss_pred CeEEEEcCccCHHHH--HHH-HhCCEEEEecCchHHHHHHHHHHHHc
Q 019839 122 IISLELGAGTGLAGI--LLS-RVAWTVFLTDHGNYILDNCAKNVQLN 165 (335)
Q Consensus 122 ~~VLELG~GtGL~gl--~la-~~~~~V~~TD~~~~~l~~~~~Nv~~N 165 (335)
++|-=||+|+=-.|| .+| ..|..|++.|.+++.++....++..+
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~ 356 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDL 356 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 578899999622233 334 66999999999999888877666543
No 399
>PRK05599 hypothetical protein; Provisional
Probab=52.34 E-value=68 Score=28.73 Aligned_cols=58 Identities=17% Similarity=0.173 Sum_probs=38.2
Q ss_pred CeEEEEcCccCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 122 IISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 122 ~~VLELG~GtGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
++||=.|++.|+ |..+|+. |.+|++++.+++-++.+...+...+ ...+.+...|-.+.
T Consensus 1 ~~vlItGas~GI-G~aia~~l~~g~~Vil~~r~~~~~~~~~~~l~~~~-----~~~~~~~~~Dv~d~ 61 (246)
T PRK05599 1 MSILILGGTSDI-AGEIATLLCHGEDVVLAARRPEAAQGLASDLRQRG-----ATSVHVLSFDAQDL 61 (246)
T ss_pred CeEEEEeCccHH-HHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcc-----CCceEEEEcccCCH
Confidence 457778888776 5444433 7899999998877766666665432 23456667776654
No 400
>PLN02780 ketoreductase/ oxidoreductase
Probab=52.06 E-value=57 Score=30.87 Aligned_cols=60 Identities=17% Similarity=0.258 Sum_probs=40.8
Q ss_pred CCCeEEEEcCccCHHHHH----HHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCC
Q 019839 120 NGIISLELGAGTGLAGIL----LSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMN 184 (335)
Q Consensus 120 ~g~~VLELG~GtGL~gl~----la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~ 184 (335)
.|+++|=.||+.|+ |.. +++.|.+|++++.+++-++.+...+..... ..++.....|..+
T Consensus 52 ~g~~~lITGAs~GI-G~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~~~~----~~~~~~~~~Dl~~ 115 (320)
T PLN02780 52 YGSWALVTGPTDGI-GKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSKYS----KTQIKTVVVDFSG 115 (320)
T ss_pred cCCEEEEeCCCcHH-HHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCC----CcEEEEEEEECCC
Confidence 58999999987775 433 344488999999998877777766654321 2345556666553
No 401
>PRK07677 short chain dehydrogenase; Provisional
Probab=51.81 E-value=84 Score=28.01 Aligned_cols=59 Identities=15% Similarity=0.267 Sum_probs=37.2
Q ss_pred CCeEEEEcCccCHHHHH---HHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 121 GIISLELGAGTGLAGIL---LSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 121 g~~VLELG~GtGL~gl~---la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
|+++|=.|++.|+-.-+ +++.|.+|++++.++..++.+...+... ..++.+...|-.+.
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~ 62 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQF------PGQVLTVQMDVRNP 62 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCcEEEEEecCCCH
Confidence 57888889876643322 2334889999999876666555444332 23566667775543
No 402
>PRK07831 short chain dehydrogenase; Provisional
Probab=51.74 E-value=1.1e+02 Score=27.50 Aligned_cols=65 Identities=20% Similarity=0.189 Sum_probs=40.4
Q ss_pred CCCCCCeEEEEcC-ccCHHH---HHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 117 SDFNGIISLELGA-GTGLAG---ILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 117 ~~~~g~~VLELG~-GtGL~g---l~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
...+++++|=.|+ |.|+-. ..++..|.+|+++|.++.-++.....+..+.. ..++.+...|..+.
T Consensus 13 ~~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Dl~~~ 81 (262)
T PRK07831 13 GLLAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELG----LGRVEAVVCDVTSE 81 (262)
T ss_pred cccCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcC----CceEEEEEccCCCH
Confidence 3467899999997 445422 22334488999999987666655555543211 13566677776654
No 403
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=51.66 E-value=90 Score=28.30 Aligned_cols=62 Identities=16% Similarity=0.260 Sum_probs=40.3
Q ss_pred CCCCCeEEEEcCccCHHHH---HHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 118 DFNGIISLELGAGTGLAGI---LLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl---~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
.++++++|=.|++.|+-.- .+++.|.+|++++.+++.++.+...+... ..++.+...|..+.
T Consensus 7 ~~~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dl~~~ 71 (278)
T PRK08277 7 SLKGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAA------GGEALAVKADVLDK 71 (278)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCeEEEEECCCCCH
Confidence 4678999999987665222 23334889999999876665555444332 24566677776654
No 404
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=51.25 E-value=1e+02 Score=27.00 Aligned_cols=60 Identities=13% Similarity=0.181 Sum_probs=39.7
Q ss_pred CCCCeEEEEcCccCHHHHHHHH----hCCEEEEe-cCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 119 FNGIISLELGAGTGLAGILLSR----VAWTVFLT-DHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~la~----~~~~V~~T-D~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
+.+++||=.|+ +|-+|..+++ .|.+|+.+ +.++.-++.+...+... ..++.+...|..+.
T Consensus 3 ~~~~~ilI~Ga-sg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~ 67 (247)
T PRK05565 3 LMGKVAIVTGA-SGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEE------GGDAIAVKADVSSE 67 (247)
T ss_pred CCCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc------CCeEEEEECCCCCH
Confidence 56788998986 4545554443 47899998 98876665555444432 24577788887765
No 405
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=51.02 E-value=57 Score=29.46 Aligned_cols=43 Identities=19% Similarity=0.099 Sum_probs=29.2
Q ss_pred CCCCCCeEEEEcCc-cCHHHHHHHHh-CCE-EEEecCchHHHHHHH
Q 019839 117 SDFNGIISLELGAG-TGLAGILLSRV-AWT-VFLTDHGNYILDNCA 159 (335)
Q Consensus 117 ~~~~g~~VLELG~G-tGL~gl~la~~-~~~-V~~TD~~~~~l~~~~ 159 (335)
...+|.+||=.|+| .|...+.+|+. |.+ |++|+.+++-++.++
T Consensus 94 ~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~ 139 (277)
T cd08255 94 EPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAE 139 (277)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHH
Confidence 44678899999875 24444445554 666 999998877666444
No 406
>PRK07576 short chain dehydrogenase; Provisional
Probab=50.93 E-value=94 Score=28.08 Aligned_cols=60 Identities=13% Similarity=0.140 Sum_probs=37.7
Q ss_pred CCCCeEEEEcCccCHHHHHH----HHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 119 FNGIISLELGAGTGLAGILL----SRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~l----a~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
+++++||=.|++-|+ |..+ +..|.+|+++|.+++-++.+...+... ..++.+..+|..+.
T Consensus 7 ~~~k~ilItGasggI-G~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dv~~~ 70 (264)
T PRK07576 7 FAGKNVVVVGGTSGI-NLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQA------GPEGLGVSADVRDY 70 (264)
T ss_pred CCCCEEEEECCCchH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh------CCceEEEECCCCCH
Confidence 678999999975544 4333 334889999999876554444333321 13456677776653
No 407
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=50.93 E-value=29 Score=33.26 Aligned_cols=43 Identities=16% Similarity=0.226 Sum_probs=30.4
Q ss_pred CCCCCCeEEEEcCc-cCHHHHHHHHh-CC-EEEEecCchHHHHHHH
Q 019839 117 SDFNGIISLELGAG-TGLAGILLSRV-AW-TVFLTDHGNYILDNCA 159 (335)
Q Consensus 117 ~~~~g~~VLELG~G-tGL~gl~la~~-~~-~V~~TD~~~~~l~~~~ 159 (335)
...+|.+||=.|+| .|+..+.+|+. |. +|+++|.+++-++.++
T Consensus 181 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~ 226 (365)
T cd08277 181 KVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAK 226 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH
Confidence 34678899999876 45555555555 66 7999999877666664
No 408
>PRK07478 short chain dehydrogenase; Provisional
Probab=50.91 E-value=97 Score=27.58 Aligned_cols=60 Identities=18% Similarity=0.260 Sum_probs=40.1
Q ss_pred CCCCeEEEEcCccCHHHHHH----HHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 119 FNGIISLELGAGTGLAGILL----SRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~l----a~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
++++++|=.|++.|+ |..+ ++.|.+|++++.++.-++.+...+.... .++.+...|..+.
T Consensus 4 ~~~k~~lItGas~gi-G~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~D~~~~ 67 (254)
T PRK07478 4 LNGKVAIITGASSGI-GRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEG------GEAVALAGDVRDE 67 (254)
T ss_pred CCCCEEEEeCCCChH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CcEEEEEcCCCCH
Confidence 578899999987664 3333 3348899999998776666655554322 3466666776554
No 409
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=50.85 E-value=68 Score=29.58 Aligned_cols=61 Identities=21% Similarity=0.246 Sum_probs=49.5
Q ss_pred HHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHcc
Q 019839 102 ELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNS 166 (335)
Q Consensus 102 a~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~ 166 (335)
.+.|...+... ....|..|||-=+|+|.+++++...+...++.+++++.++.+...+..+.
T Consensus 208 P~~l~~r~i~~----~s~~~diVlDpf~GsGtt~~aa~~~~r~~ig~e~~~~y~~~~~~r~~~~~ 268 (302)
T COG0863 208 PLALIERLIRD----YSFPGDIVLDPFAGSGTTGIAAKNLGRRFIGIEINPEYVEVALKRLQEGL 268 (302)
T ss_pred hHHHHHHHHHh----cCCCCCEEeecCCCCChHHHHHHHcCCceEEEecCHHHHHHHHHHHHhhc
Confidence 34444444433 34788999999999999999999999999999999999998888877654
No 410
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=50.82 E-value=94 Score=27.39 Aligned_cols=60 Identities=15% Similarity=0.238 Sum_probs=39.0
Q ss_pred CCCCeEEEEcCccCHHHHH---HHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 119 FNGIISLELGAGTGLAGIL---LSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~---la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
+++++||=.|+..|+-.-+ ++..|.+|++++.++.-++.+..++.. ..++.+...|..+.
T Consensus 3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~D~~~~ 65 (251)
T PRK07231 3 LEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA-------GGRAIAVAADVSDE 65 (251)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-------CCeEEEEECCCCCH
Confidence 5788999999865543322 333488999999997666555555433 13466777776654
No 411
>PLN02827 Alcohol dehydrogenase-like
Probab=50.67 E-value=30 Score=33.58 Aligned_cols=43 Identities=14% Similarity=0.112 Sum_probs=30.0
Q ss_pred CCCCCCeEEEEcCc-cCHHHHHHHHh-CC-EEEEecCchHHHHHHH
Q 019839 117 SDFNGIISLELGAG-TGLAGILLSRV-AW-TVFLTDHGNYILDNCA 159 (335)
Q Consensus 117 ~~~~g~~VLELG~G-tGL~gl~la~~-~~-~V~~TD~~~~~l~~~~ 159 (335)
...+|.+||=.|+| .|+..+.+|+. |. .|+++|.+++-++.++
T Consensus 190 ~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~ 235 (378)
T PLN02827 190 DVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAK 235 (378)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH
Confidence 34578999999876 45555555655 65 6899998876665553
No 412
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=50.62 E-value=96 Score=26.69 Aligned_cols=30 Identities=30% Similarity=0.269 Sum_probs=21.2
Q ss_pred eEEEEcCc-cC-HHHHHHHHhC-CEEEEecCch
Q 019839 123 ISLELGAG-TG-LAGILLSRVA-WTVFLTDHGN 152 (335)
Q Consensus 123 ~VLELG~G-tG-L~gl~la~~~-~~V~~TD~~~ 152 (335)
+|+=+||| .| -+...+++.| .++++.|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 47888998 45 3455566666 4799999874
No 413
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=50.36 E-value=23 Score=31.55 Aligned_cols=34 Identities=18% Similarity=-0.057 Sum_probs=28.0
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHhC---CEEEEecCc
Q 019839 118 DFNGIISLELGAGTGLAGILLSRVA---WTVFLTDHG 151 (335)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~la~~~---~~V~~TD~~ 151 (335)
.-++.+|||+||..|.-+-++-+.. ..|.+.|+-
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDll 103 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLL 103 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeee
Confidence 3478899999999999888877763 578999985
No 414
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=50.30 E-value=28 Score=32.94 Aligned_cols=43 Identities=23% Similarity=0.197 Sum_probs=30.1
Q ss_pred CCCCCCeEEEEcCc-cCHHHHHHHHh-CCE-EEEecCchHHHHHHH
Q 019839 117 SDFNGIISLELGAG-TGLAGILLSRV-AWT-VFLTDHGNYILDNCA 159 (335)
Q Consensus 117 ~~~~g~~VLELG~G-tGL~gl~la~~-~~~-V~~TD~~~~~l~~~~ 159 (335)
....|.+||=+||| .|+..+.+|+. |.+ |+++|.+++-++.++
T Consensus 157 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~ 202 (347)
T PRK10309 157 QGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAK 202 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH
Confidence 34578899999886 45555555655 665 799998877666553
No 415
>PRK06138 short chain dehydrogenase; Provisional
Probab=50.21 E-value=98 Score=27.33 Aligned_cols=59 Identities=20% Similarity=0.326 Sum_probs=39.5
Q ss_pred CCCCeEEEEcCccCHHHHHHH----HhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 119 FNGIISLELGAGTGLAGILLS----RVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~la----~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
++++++|=.||..|+ |..++ +.|.+|++++.+.+.++.....+. . ..++.+...|..+.
T Consensus 3 ~~~k~~lItG~sg~i-G~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~--~-----~~~~~~~~~D~~~~ 65 (252)
T PRK06138 3 LAGRVAIVTGAGSGI-GRATAKLFAREGARVVVADRDAEAAERVAAAIA--A-----GGRAFARQGDVGSA 65 (252)
T ss_pred CCCcEEEEeCCCchH-HHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh--c-----CCeEEEEEcCCCCH
Confidence 578899999996554 43333 347899999998765555554443 1 24577777887664
No 416
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=50.15 E-value=18 Score=35.62 Aligned_cols=44 Identities=20% Similarity=0.204 Sum_probs=29.2
Q ss_pred CCCCeEEEEcCc-cC-HHHHHHHHhC-CEEEEecCchHHHHHHHHHH
Q 019839 119 FNGIISLELGAG-TG-LAGILLSRVA-WTVFLTDHGNYILDNCAKNV 162 (335)
Q Consensus 119 ~~g~~VLELG~G-tG-L~gl~la~~~-~~V~~TD~~~~~l~~~~~Nv 162 (335)
+++.+||=+||| .| -+...+++.| .++++.|.+.--..++.+++
T Consensus 40 L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~ 86 (392)
T PRK07878 40 LKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQV 86 (392)
T ss_pred HhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCccccccc
Confidence 577899999999 34 4445566666 58999998743334444443
No 417
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=49.76 E-value=1.1e+02 Score=29.77 Aligned_cols=62 Identities=13% Similarity=0.153 Sum_probs=38.5
Q ss_pred CCCCCCeEEEEcCccCHHHHHHHHh----CCEEEEecCchHHHHH--HHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 117 SDFNGIISLELGAGTGLAGILLSRV----AWTVFLTDHGNYILDN--CAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 117 ~~~~g~~VLELG~GtGL~gl~la~~----~~~V~~TD~~~~~l~~--~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
...++++||=.| |+|.+|..+++. |.+|++++.++.-+.. ........ ...+.+...|+.+.
T Consensus 56 ~~~~~~kVLVtG-atG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~------~~~v~~v~~Dl~d~ 123 (390)
T PLN02657 56 KEPKDVTVLVVG-ATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKE------LPGAEVVFGDVTDA 123 (390)
T ss_pred cCCCCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhhh------cCCceEEEeeCCCH
Confidence 446788999999 578888777654 7899999987532210 01111111 23467777787764
No 418
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=49.74 E-value=59 Score=30.41 Aligned_cols=40 Identities=25% Similarity=0.219 Sum_probs=28.1
Q ss_pred CCCeEEEEcCcc-CHHHHHHHHh-CC-EEEEecCchHHHHHHH
Q 019839 120 NGIISLELGAGT-GLAGILLSRV-AW-TVFLTDHGNYILDNCA 159 (335)
Q Consensus 120 ~g~~VLELG~Gt-GL~gl~la~~-~~-~V~~TD~~~~~l~~~~ 159 (335)
+|.+||-.|||. |...+.+|+. |. +|++|+.++...+.++
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~ 207 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVAR 207 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH
Confidence 889999988762 4444445544 66 8999999877666543
No 419
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=49.69 E-value=16 Score=36.63 Aligned_cols=89 Identities=20% Similarity=0.232 Sum_probs=55.0
Q ss_pred CCCCCCeEEEEcCccCHHHHHHHHh----CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccC
Q 019839 117 SDFNGIISLELGAGTGLAGILLSRV----AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSL 192 (335)
Q Consensus 117 ~~~~g~~VLELG~GtGL~gl~la~~----~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~ 192 (335)
+.++...++++|+|+|--+=++-.+ -..+++.|.+..|+.+...|..-..+ .+.+.++.+.+.+.-.+.
T Consensus 197 p~f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~----~g~~~v~~~~~~r~~~pi--- 269 (491)
T KOG2539|consen 197 PKFRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSH----IGEPIVRKLVFHRQRLPI--- 269 (491)
T ss_pred cccChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhh----cCchhccccchhcccCCC---
Confidence 5577778999999977544333333 24689999999999888877653111 123333333333321111
Q ss_pred CCCCccccccccCcchhhccCCccEEEEeccccCccc
Q 019839 193 GNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDL 229 (335)
Q Consensus 193 ~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~ 229 (335)
.....||+||++-.++....
T Consensus 270 -----------------~~~~~yDlvi~ah~l~~~~s 289 (491)
T KOG2539|consen 270 -----------------DIKNGYDLVICAHKLHELGS 289 (491)
T ss_pred -----------------CcccceeeEEeeeeeeccCC
Confidence 12236999999999988643
No 420
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=49.63 E-value=26 Score=32.06 Aligned_cols=35 Identities=26% Similarity=0.315 Sum_probs=24.8
Q ss_pred CCCCCeEEEEcCc-cC-HHHHHHHHhC-CEEEEecCch
Q 019839 118 DFNGIISLELGAG-TG-LAGILLSRVA-WTVFLTDHGN 152 (335)
Q Consensus 118 ~~~g~~VLELG~G-tG-L~gl~la~~~-~~V~~TD~~~ 152 (335)
.++.++|+=+||| .| -+...+++.| .+++..|.+.
T Consensus 29 ~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 66 (245)
T PRK05690 29 KLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT 66 (245)
T ss_pred HhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 3678899999997 44 3444455556 5888888774
No 421
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=49.50 E-value=61 Score=30.23 Aligned_cols=43 Identities=12% Similarity=0.014 Sum_probs=32.1
Q ss_pred CCCCCCeEEEEcC-c-cCHHHHHHHHh-CCEEEEecCchHHHHHHH
Q 019839 117 SDFNGIISLELGA-G-TGLAGILLSRV-AWTVFLTDHGNYILDNCA 159 (335)
Q Consensus 117 ~~~~g~~VLELG~-G-tGL~gl~la~~-~~~V~~TD~~~~~l~~~~ 159 (335)
...+|.+||=.|+ | .|...+.+|+. |.+|++|+.+++-.+.++
T Consensus 135 ~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~ 180 (325)
T TIGR02825 135 GVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLK 180 (325)
T ss_pred CCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 3457889999985 3 67777767766 789999998876666664
No 422
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=49.44 E-value=1.3e+02 Score=31.59 Aligned_cols=31 Identities=19% Similarity=0.122 Sum_probs=23.0
Q ss_pred CeEEEEcCccCHHHHHHHHhC--------------CEEEEecCch
Q 019839 122 IISLELGAGTGLAGILLSRVA--------------WTVFLTDHGN 152 (335)
Q Consensus 122 ~~VLELG~GtGL~gl~la~~~--------------~~V~~TD~~~ 152 (335)
-+|+|+|=|+|+-.+++.+.- -+++..+..|
T Consensus 59 ~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p 103 (662)
T PRK01747 59 FVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFP 103 (662)
T ss_pred EEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCC
Confidence 589999999998777766321 1677888755
No 423
>PRK06720 hypothetical protein; Provisional
Probab=49.34 E-value=1.2e+02 Score=25.84 Aligned_cols=61 Identities=16% Similarity=0.228 Sum_probs=38.3
Q ss_pred CCCCeEEEEcCccCHHHH---HHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 119 FNGIISLELGAGTGLAGI---LLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl---~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
++|+.+|=-|++.|+-.- .+++.|++|+++|.++..++.....+..- ...+.+..+|..+.
T Consensus 14 l~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~------~~~~~~~~~Dl~~~ 77 (169)
T PRK06720 14 LAGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNL------GGEALFVSYDMEKQ 77 (169)
T ss_pred cCCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc------CCcEEEEEccCCCH
Confidence 578899999988765332 23345889999999876554444444321 23455666776543
No 424
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=49.23 E-value=67 Score=30.27 Aligned_cols=42 Identities=21% Similarity=0.181 Sum_probs=28.7
Q ss_pred CCCCCCeEEEEcCc-cCHHHHHHHH-hCCEEEEecCchHHHHHH
Q 019839 117 SDFNGIISLELGAG-TGLAGILLSR-VAWTVFLTDHGNYILDNC 158 (335)
Q Consensus 117 ~~~~g~~VLELG~G-tGL~gl~la~-~~~~V~~TD~~~~~l~~~ 158 (335)
..+.+++|+=||+| +|...+..++ .|++|+..|.++...+.+
T Consensus 148 ~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~ 191 (296)
T PRK08306 148 ITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARI 191 (296)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 45689999999998 4443333333 378999999997544433
No 425
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=48.57 E-value=29 Score=29.56 Aligned_cols=44 Identities=16% Similarity=0.134 Sum_probs=29.2
Q ss_pred CCCCCCeEEEEcCc-cCHHHHHHHHh-CCEEEEecCchHHHHHHHH
Q 019839 117 SDFNGIISLELGAG-TGLAGILLSRV-AWTVFLTDHGNYILDNCAK 160 (335)
Q Consensus 117 ~~~~g~~VLELG~G-tGL~gl~la~~-~~~V~~TD~~~~~l~~~~~ 160 (335)
..++..+|+=+|+| +|.-++.+++. |++|+..|..+..++..+.
T Consensus 16 ~~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~ 61 (168)
T PF01262_consen 16 GGVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLES 61 (168)
T ss_dssp TEE-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHH
T ss_pred CCCCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhc
Confidence 34567899999988 56555555543 8999999998766655543
No 426
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=48.17 E-value=35 Score=33.32 Aligned_cols=42 Identities=17% Similarity=0.045 Sum_probs=29.3
Q ss_pred CCCCeEEEEcCc-cCHHHHHHHHh-CCEEEEecCchHHHHHHHH
Q 019839 119 FNGIISLELGAG-TGLAGILLSRV-AWTVFLTDHGNYILDNCAK 160 (335)
Q Consensus 119 ~~g~~VLELG~G-tGL~gl~la~~-~~~V~~TD~~~~~l~~~~~ 160 (335)
+++++|+=+|+| .|...+..++. |++|++.|.++.-++.+..
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~ 208 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDA 208 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH
Confidence 466789999887 55555554443 7899999998766555443
No 427
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=48.03 E-value=31 Score=35.04 Aligned_cols=92 Identities=13% Similarity=0.130 Sum_probs=56.2
Q ss_pred CeEEEEcCccCHHHHHHHHhC---CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcc
Q 019839 122 IISLELGAGTGLAGILLSRVA---WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS 198 (335)
Q Consensus 122 ~~VLELG~GtGL~gl~la~~~---~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~ 198 (335)
++|+|..||.|-.+.++.... -+|+-++ .+..|..+-.. -+--...||-+..+.
T Consensus 367 RNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~-~~ntL~vIydR------------GLIG~yhDWCE~fsT---------- 423 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDDPVWVMNVVPVS-GPNTLPVIYDR------------GLIGVYHDWCEAFST---------- 423 (506)
T ss_pred eeeeeecccccHHHHHhccCCceEEEecccC-CCCcchhhhhc------------ccchhccchhhccCC----------
Confidence 479999999996555554433 2344442 22333333211 112245688776432
Q ss_pred ccccccCcchhhccCCccEEEEeccccC---cccHHHHHHHHHHhccCCCcce
Q 019839 199 QERYSWNSSELKEVQRASVLLAADVIYS---DDLTDALFHTLKRLMPLGSKKV 248 (335)
Q Consensus 199 ~~~~~w~~~~~~~~~~fDlIlasDviY~---~~~~~~L~~tl~~lL~~~~~~~ 248 (335)
-...||+|=|+.++=. .-..+.++-.+.|+|+|+|..+
T Consensus 424 ------------YPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~i 464 (506)
T PF03141_consen 424 ------------YPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVI 464 (506)
T ss_pred ------------CCcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEE
Confidence 2458999998877643 2356778889999999988543
No 428
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=48.03 E-value=1.2e+02 Score=26.47 Aligned_cols=60 Identities=17% Similarity=0.170 Sum_probs=38.7
Q ss_pred CCCCeEEEEcCccCHHHHHHHHh----CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 119 FNGIISLELGAGTGLAGILLSRV----AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~la~~----~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
+.+++||=.|+ +|.+|..+++. |.+|++++.++.-++.+...+... ..++.+...|..+.
T Consensus 3 ~~~~~ilItGa-sg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~ 66 (246)
T PRK05653 3 LQGKTALVTGA-SRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAA------GGEARVLVFDVSDE 66 (246)
T ss_pred CCCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhc------CCceEEEEccCCCH
Confidence 45688998887 56666665543 789999999876555444333321 24566666776654
No 429
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=48.02 E-value=1.2e+02 Score=28.31 Aligned_cols=62 Identities=24% Similarity=0.361 Sum_probs=49.4
Q ss_pred CCCCCeEEEEcCccCHHHHH----HHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 118 DFNGIISLELGAGTGLAGIL----LSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~----la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
...++++|==||=.|+ |.. +|+.|.+|+.+-.+.+-|+.+++.++... ...+.+...|..+.
T Consensus 3 ~~~~~~~lITGASsGI-G~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~-----~v~v~vi~~DLs~~ 68 (265)
T COG0300 3 PMKGKTALITGASSGI-GAELAKQLARRGYNLILVARREDKLEALAKELEDKT-----GVEVEVIPADLSDP 68 (265)
T ss_pred CCCCcEEEEECCCchH-HHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhh-----CceEEEEECcCCCh
Confidence 3577899999997775 444 44448999999999999999999998765 36788899998876
No 430
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=47.61 E-value=23 Score=34.65 Aligned_cols=42 Identities=26% Similarity=0.246 Sum_probs=28.2
Q ss_pred CCCCCeEEEEcCc-cC-HHHHHHHHhC-CEEEEecCchHHHHHHH
Q 019839 118 DFNGIISLELGAG-TG-LAGILLSRVA-WTVFLTDHGNYILDNCA 159 (335)
Q Consensus 118 ~~~g~~VLELG~G-tG-L~gl~la~~~-~~V~~TD~~~~~l~~~~ 159 (335)
.+++.+||=+||| .| .+...+++.| .++++.|.+.--+.++.
T Consensus 38 ~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~ 82 (370)
T PRK05600 38 RLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIH 82 (370)
T ss_pred HhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEcccccc
Confidence 3678899999999 44 4444556666 58999998743333333
No 431
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=47.58 E-value=33 Score=33.58 Aligned_cols=44 Identities=25% Similarity=0.162 Sum_probs=33.2
Q ss_pred CCCCCeEEEEc-Cc-cCHHHHHHHHh-C---CEEEEecCchHHHHHHHHH
Q 019839 118 DFNGIISLELG-AG-TGLAGILLSRV-A---WTVFLTDHGNYILDNCAKN 161 (335)
Q Consensus 118 ~~~g~~VLELG-~G-tGL~gl~la~~-~---~~V~~TD~~~~~l~~~~~N 161 (335)
...|.+||=+| +| .|+..+.+|+. | .+|+++|.+++-++.+++.
T Consensus 173 ~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~ 222 (410)
T cd08238 173 IKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRL 222 (410)
T ss_pred CCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHh
Confidence 34678999897 45 78888777776 3 2799999998877777653
No 432
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=47.27 E-value=40 Score=34.44 Aligned_cols=43 Identities=19% Similarity=0.244 Sum_probs=30.4
Q ss_pred CeEEEEcCcc-C-HHHHHHHHhCCEEEEecCchHHHHHHHHHHHH
Q 019839 122 IISLELGAGT-G-LAGILLSRVAWTVFLTDHGNYILDNCAKNVQL 164 (335)
Q Consensus 122 ~~VLELG~Gt-G-L~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~ 164 (335)
++|-=+|+|+ | -.+..+++.|..|++.|.+++.++....+++.
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~ 50 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEA 50 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 4677788884 2 23334556689999999999988877665543
No 433
>TIGR03130 malonate_delta malonate decarboxylase acyl carrier protein. Members of this protein family are the acyl carrier protein, also called the delta subunit, of malonate decarboxylase. This subunit has the same covalently bound prosthetic group, derived from and similar to coenzyme A, as does citrate lyase, although this protein and the acyl carrier protein of citrate lyase do not show significant sequence similarity. Both malonyl and acetyl groups are transferred to the prosthetic group for catalysis.
Probab=47.19 E-value=90 Score=24.58 Aligned_cols=74 Identities=20% Similarity=0.271 Sum_probs=50.3
Q ss_pred ccccccCCCCeeeeccCCCCCCceeEEEecccccCCCCccceeehhHHHHHHHHHhhcCCCCCCCC--CeEEEEcCccCH
Q 019839 56 EVLTLDDDGDLVLPRRSKQSTRCFNVTIQHNITSLIPSVGLQVWKAELVLADFVMHKMCTSSDFNG--IISLELGAGTGL 133 (335)
Q Consensus 56 ~~~~~d~dgdl~v~r~~~~~~~~~~i~i~~~~~~~~~~~G~~vW~aa~~La~~l~~~~~~~~~~~g--~~VLELG~GtGL 133 (335)
-.+.+-..|||.|-..+........|.|..+. . ....+|.+ ++.+|...+. ..+ ..|=|.||=.|.
T Consensus 19 ~lvGVVGSGdLEVL~ep~~~~~~~~v~I~Tsv----~-Gf~~~Wqa--vl~rf~~~~~-----~~~~~i~InD~GATP~V 86 (98)
T TIGR03130 19 ALVGVVGSGDLEVLVEPGAEGGKTEVRITTSV----D-GFGAVWQA--VIERFFARYP-----LAGLQIEINDFGATPAV 86 (98)
T ss_pred EEEEEEccCceEEEEEcCCCCCeEEEEEEecc----c-CcHHHHHH--HHHHHHhhCC-----CCccEEEEecCCCCchh
Confidence 44578899999998665433344555555443 2 34589987 6888887652 333 357788999999
Q ss_pred HHHHHHHh
Q 019839 134 AGILLSRV 141 (335)
Q Consensus 134 ~gl~la~~ 141 (335)
++|-+.+.
T Consensus 87 V~LRL~QA 94 (98)
T TIGR03130 87 VSLRLRQA 94 (98)
T ss_pred hhhhHHHH
Confidence 99988764
No 434
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=47.18 E-value=2.5e+02 Score=26.50 Aligned_cols=60 Identities=15% Similarity=0.061 Sum_probs=37.0
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHh----CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 118 DFNGIISLELGAGTGLAGILLSRV----AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~la~~----~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
.-.+++||=.|+ +|.+|-.+++. |.+|++++.++.-.+.+..... . ..++.+...|..+.
T Consensus 7 ~~~~~~vLVtG~-~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~--~-----~~~~~~~~~Dl~~~ 70 (353)
T PLN02896 7 ESATGTYCVTGA-TGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWK--E-----GDRLRLFRADLQEE 70 (353)
T ss_pred ccCCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhc--c-----CCeEEEEECCCCCH
Confidence 356789999985 67777766664 7899998877533222222111 1 23566666776654
No 435
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=47.09 E-value=82 Score=29.18 Aligned_cols=61 Identities=18% Similarity=0.232 Sum_probs=35.4
Q ss_pred CCCeEEEEcCccCHHHHHHHHh----CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 120 NGIISLELGAGTGLAGILLSRV----AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 120 ~g~~VLELG~GtGL~gl~la~~----~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
+|++||=.|+ +|.+|-.+++. |.+|++++.++.-............. ..++.+...|..+.
T Consensus 3 ~~~~ilVtGa-tGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~----~~~~~~~~~Dl~~~ 67 (322)
T PLN02662 3 EGKVVCVTGA-SGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGA----KERLHLFKANLLEE 67 (322)
T ss_pred CCCEEEEECC-hHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCC----CCceEEEeccccCc
Confidence 4678998886 67777666654 78999888764322222211111110 23566777776654
No 436
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=47.09 E-value=1.2e+02 Score=26.69 Aligned_cols=59 Identities=15% Similarity=0.147 Sum_probs=36.7
Q ss_pred CCCCeEEEEcCccCHHHHHHH----HhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCC
Q 019839 119 FNGIISLELGAGTGLAGILLS----RVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMN 184 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~la----~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~ 184 (335)
++++++|=.|++.|+ |..++ +.|.+|+++|.++.-++.+...+... ..++.....|..+
T Consensus 3 ~~~~~~lItG~~g~i-G~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~ 65 (253)
T PRK08217 3 LKDKVIVITGGAQGL-GRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGAL------GTEVRGYAANVTD 65 (253)
T ss_pred CCCCEEEEECCCchH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCceEEEEcCCCC
Confidence 578899999985554 43333 33789999999875555544444332 2345556666544
No 437
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=46.85 E-value=68 Score=30.09 Aligned_cols=43 Identities=14% Similarity=0.138 Sum_probs=29.4
Q ss_pred CCCCCCeEEEEcCc-cCHHHHHHHHh-CCEEEEecCchHHHHHHH
Q 019839 117 SDFNGIISLELGAG-TGLAGILLSRV-AWTVFLTDHGNYILDNCA 159 (335)
Q Consensus 117 ~~~~g~~VLELG~G-tGL~gl~la~~-~~~V~~TD~~~~~l~~~~ 159 (335)
....|.+||=.|+| .|...+.+|+. |.+|++++.+++-++.++
T Consensus 160 ~~~~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~ 204 (333)
T cd08296 160 GAKPGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLAR 204 (333)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH
Confidence 34578899999964 34444445554 778999999876666553
No 438
>PRK08643 acetoin reductase; Validated
Probab=46.76 E-value=1.2e+02 Score=27.05 Aligned_cols=58 Identities=17% Similarity=0.294 Sum_probs=38.0
Q ss_pred CCeEEEEcCccCHHHHHHH----HhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 121 GIISLELGAGTGLAGILLS----RVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 121 g~~VLELG~GtGL~gl~la----~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
++++|=.|+..|+ |..++ +.|.+|+++|.++..++.+...+... ..++.+...|..+.
T Consensus 2 ~k~~lItGas~gi-G~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dl~~~ 63 (256)
T PRK08643 2 SKVALVTGAGQGI-GFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKD------GGKAIAVKADVSDR 63 (256)
T ss_pred CCEEEEECCCChH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCeEEEEECCCCCH
Confidence 5678888877664 44333 33889999999876666665555432 23566677777664
No 439
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=45.67 E-value=14 Score=35.86 Aligned_cols=35 Identities=20% Similarity=0.229 Sum_probs=25.0
Q ss_pred CCCCCeEEEEcCc-cC-HHHHHHHHhC-CEEEEecCch
Q 019839 118 DFNGIISLELGAG-TG-LAGILLSRVA-WTVFLTDHGN 152 (335)
Q Consensus 118 ~~~g~~VLELG~G-tG-L~gl~la~~~-~~V~~TD~~~ 152 (335)
.+++.+||=+||| .| -+...+++.| .++++.|.+.
T Consensus 25 ~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 25 SLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred HHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 3678899999999 34 3445566665 5788888764
No 440
>PRK09291 short chain dehydrogenase; Provisional
Probab=45.56 E-value=1.1e+02 Score=27.26 Aligned_cols=58 Identities=16% Similarity=0.120 Sum_probs=36.8
Q ss_pred CCeEEEEcCccCHHHHHHHH----hCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 121 GIISLELGAGTGLAGILLSR----VAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 121 g~~VLELG~GtGL~gl~la~----~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
+++||=.|++.|+ |..+++ .|.+|++++.++.-++.++...... ...+.+...|+.+.
T Consensus 2 ~~~vlVtGasg~i-G~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~ 63 (257)
T PRK09291 2 SKTILITGAGSGF-GREVALRLARKGHNVIAGVQIAPQVTALRAEAARR------GLALRVEKLDLTDA 63 (257)
T ss_pred CCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCcceEEEeeCCCH
Confidence 4678888886554 444433 3789999998865554444433322 23467778887765
No 441
>PRK09186 flagellin modification protein A; Provisional
Probab=45.51 E-value=1.3e+02 Score=26.69 Aligned_cols=62 Identities=18% Similarity=0.207 Sum_probs=38.9
Q ss_pred CCCCeEEEEcCccCHHHHHHHH----hCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 119 FNGIISLELGAGTGLAGILLSR----VAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~la~----~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
.++++||=.|++.|+ |..+++ .|.+|++++.+++-++.+...+..... ...+.+...|..+.
T Consensus 2 ~~~k~vlItGas~gi-G~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~----~~~~~~~~~Dl~d~ 67 (256)
T PRK09186 2 LKGKTILITGAGGLI-GSALVKAILEAGGIVIAADIDKEALNELLESLGKEFK----SKKLSLVELDITDQ 67 (256)
T ss_pred CCCCEEEEECCCchH-HHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcC----CCceeEEEecCCCH
Confidence 468899999986553 444433 378999999987666655555533211 12345556676654
No 442
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=45.49 E-value=72 Score=29.97 Aligned_cols=44 Identities=14% Similarity=0.012 Sum_probs=32.1
Q ss_pred CCCCCCeEEEEcC--ccCHHHHHHHHh-CCEEEEecCchHHHHHHHH
Q 019839 117 SDFNGIISLELGA--GTGLAGILLSRV-AWTVFLTDHGNYILDNCAK 160 (335)
Q Consensus 117 ~~~~g~~VLELG~--GtGL~gl~la~~-~~~V~~TD~~~~~l~~~~~ 160 (335)
....|.+||=.|+ |.|...+.+|+. |.+|++|+.+++-.+.++.
T Consensus 148 ~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~ 194 (338)
T cd08295 148 KPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKN 194 (338)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 3467899999997 356666666665 7899999988776666654
No 443
>PRK08251 short chain dehydrogenase; Provisional
Probab=45.47 E-value=1.3e+02 Score=26.51 Aligned_cols=60 Identities=18% Similarity=0.105 Sum_probs=39.6
Q ss_pred CCeEEEEcCccCHHHHHHHH----hCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 121 GIISLELGAGTGLAGILLSR----VAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 121 g~~VLELG~GtGL~gl~la~----~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
+++||=.|+..| +|..+++ .|.+|++++.++..++.+...+..... ..++.+..+|..+.
T Consensus 2 ~k~vlItGas~g-iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~ 65 (248)
T PRK08251 2 RQKILITGASSG-LGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYP----GIKVAVAALDVNDH 65 (248)
T ss_pred CCEEEEECCCCH-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCC----CceEEEEEcCCCCH
Confidence 568888886544 4544443 378999999988777666555443211 34677788887765
No 444
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=45.44 E-value=2.4e+02 Score=25.60 Aligned_cols=57 Identities=12% Similarity=0.094 Sum_probs=33.9
Q ss_pred HHHHHHhhcCCCCCCCCCeEEEEcCccC----HHHHHHHHh--CCEEEEecCchHHHHHHHHHHHH
Q 019839 105 LADFVMHKMCTSSDFNGIISLELGAGTG----LAGILLSRV--AWTVFLTDHGNYILDNCAKNVQL 164 (335)
Q Consensus 105 La~~l~~~~~~~~~~~g~~VLELG~GtG----L~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~ 164 (335)
.|+||.... .-.+-+.++|..|+.| .++|++|.. |.+++|.--+++-+...++.+..
T Consensus 29 ~aEfISAlA---AG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~ 91 (218)
T PF07279_consen 29 VAEFISALA---AGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGE 91 (218)
T ss_pred HHHHHHHHh---ccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhh
Confidence 345554432 3356678999977644 233444333 67888887776666666665543
No 445
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=45.27 E-value=78 Score=30.01 Aligned_cols=41 Identities=22% Similarity=0.222 Sum_probs=27.0
Q ss_pred CCCCeEEEEcCc-cCHHHHHHHHh-CC-EEEEecCchHHHHHHH
Q 019839 119 FNGIISLELGAG-TGLAGILLSRV-AW-TVFLTDHGNYILDNCA 159 (335)
Q Consensus 119 ~~g~~VLELG~G-tGL~gl~la~~-~~-~V~~TD~~~~~l~~~~ 159 (335)
..|.+||=.|+| +|+..+.+|+. |. +|++++.+++-.+.++
T Consensus 176 ~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~ 219 (361)
T cd08231 176 GAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAR 219 (361)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH
Confidence 378889988865 34444444444 66 8999998876555543
No 446
>PRK06914 short chain dehydrogenase; Provisional
Probab=45.21 E-value=1.3e+02 Score=27.19 Aligned_cols=61 Identities=21% Similarity=0.288 Sum_probs=38.4
Q ss_pred CCCeEEEEcCccCHHHHHH----HHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 120 NGIISLELGAGTGLAGILL----SRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 120 ~g~~VLELG~GtGL~gl~l----a~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
.+++||=.|++.|+ |..+ +..|.+|++++.+++.++.+...+..... ..++.+...|..+.
T Consensus 2 ~~k~~lItGasg~i-G~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~----~~~~~~~~~D~~d~ 66 (280)
T PRK06914 2 NKKIAIVTGASSGF-GLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNL----QQNIKVQQLDVTDQ 66 (280)
T ss_pred CCCEEEEECCCchH-HHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCC----CCceeEEecCCCCH
Confidence 46788999976554 4333 33488999999887666555443332111 24577777787764
No 447
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=45.02 E-value=71 Score=28.84 Aligned_cols=40 Identities=10% Similarity=-0.029 Sum_probs=27.8
Q ss_pred CCCCCCeEEEEcCccC-HHHHHHH----HhCCEEEEecCchHHHH
Q 019839 117 SDFNGIISLELGAGTG-LAGILLS----RVAWTVFLTDHGNYILD 156 (335)
Q Consensus 117 ~~~~g~~VLELG~GtG-L~gl~la----~~~~~V~~TD~~~~~l~ 156 (335)
..++|+++|=.|++.| -+|..+| +.|++|+++|.+....+
T Consensus 6 ~~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~ 50 (258)
T PRK07533 6 LPLAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARP 50 (258)
T ss_pred cccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHH
Confidence 3468999999998752 3444444 44889999998864433
No 448
>PLN02494 adenosylhomocysteinase
Probab=44.62 E-value=33 Score=34.78 Aligned_cols=37 Identities=16% Similarity=0.179 Sum_probs=26.4
Q ss_pred CCCCCCeEEEEcCc-cCHHHHHHHH-hCCEEEEecCchH
Q 019839 117 SDFNGIISLELGAG-TGLAGILLSR-VAWTVFLTDHGNY 153 (335)
Q Consensus 117 ~~~~g~~VLELG~G-tGL~gl~la~-~~~~V~~TD~~~~ 153 (335)
..+.|++|+=+|+| +|..-...++ .|.+|+.+|.++.
T Consensus 250 i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~ 288 (477)
T PLN02494 250 VMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPI 288 (477)
T ss_pred CccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 34789999999999 4533333333 3789999999864
No 449
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=44.59 E-value=38 Score=32.85 Aligned_cols=35 Identities=14% Similarity=0.112 Sum_probs=26.0
Q ss_pred CCCCeEEEEcCc-cCHHHHHHHHh-CCEEEEecCchH
Q 019839 119 FNGIISLELGAG-TGLAGILLSRV-AWTVFLTDHGNY 153 (335)
Q Consensus 119 ~~g~~VLELG~G-tGL~gl~la~~-~~~V~~TD~~~~ 153 (335)
..|.+||=.|+| .|+..+.+|+. |++|+++|.+++
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~ 213 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSE 213 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChH
Confidence 368899988887 56666666665 788999987743
No 450
>PRK07904 short chain dehydrogenase; Provisional
Probab=44.40 E-value=1e+02 Score=27.78 Aligned_cols=61 Identities=21% Similarity=0.215 Sum_probs=39.8
Q ss_pred CCCCeEEEEcCccCHHHHHHHH----hC-CEEEEecCchHH-HHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 119 FNGIISLELGAGTGLAGILLSR----VA-WTVFLTDHGNYI-LDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~la~----~~-~~V~~TD~~~~~-l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
-.+++||=.||+.|+ |..+++ .| .+|++++.+++- ++.+...+..+. ..++.+..+|-.+.
T Consensus 6 ~~~~~vlItGas~gi-G~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~-----~~~v~~~~~D~~~~ 72 (253)
T PRK07904 6 GNPQTILLLGGTSEI-GLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAG-----ASSVEVIDFDALDT 72 (253)
T ss_pred CCCcEEEEEcCCcHH-HHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcC-----CCceEEEEecCCCh
Confidence 357889999997665 444443 34 799999998653 555555554432 23577777877654
No 451
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=44.02 E-value=80 Score=29.20 Aligned_cols=44 Identities=11% Similarity=0.006 Sum_probs=31.9
Q ss_pred CCCCCCeEEEEcCc--cCHHHHHHHHh-CCEEEEecCchHHHHHHHH
Q 019839 117 SDFNGIISLELGAG--TGLAGILLSRV-AWTVFLTDHGNYILDNCAK 160 (335)
Q Consensus 117 ~~~~g~~VLELG~G--tGL~gl~la~~-~~~V~~TD~~~~~l~~~~~ 160 (335)
...+|.+||=.|++ +|...+.+|+. |.+|++|+.+++-.+.++.
T Consensus 140 ~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~ 186 (329)
T cd08294 140 KPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKE 186 (329)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 34578899999853 56666666665 7899999988776666654
No 452
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=43.83 E-value=1.1e+02 Score=30.25 Aligned_cols=108 Identities=12% Similarity=0.056 Sum_probs=55.0
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHhC--CEEEEecCc----hHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCcc
Q 019839 118 DFNGIISLELGAGTGLAGILLSRVA--WTVFLTDHG----NYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFS 191 (335)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~la~~~--~~V~~TD~~----~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~ 191 (335)
.-++..-.|||+|+|-+-..+|..| +.=++..+. +....+-..|-..-.+.......+.....++.+....
T Consensus 190 ~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v--- 266 (419)
T KOG3924|consen 190 LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRV--- 266 (419)
T ss_pred cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHH---
Confidence 3456789999999995554444443 222233332 2222222333222211111023344444444433110
Q ss_pred CCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCc
Q 019839 192 LGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSK 246 (335)
Q Consensus 192 ~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~ 246 (335)
.+.....++|+...+.+++++.-.+- .|-.-+++|.+
T Consensus 267 -----------------~eI~~eatvi~vNN~~Fdp~L~lr~~-eil~~ck~gtr 303 (419)
T KOG3924|consen 267 -----------------TEIQTEATVIFVNNVAFDPELKLRSK-EILQKCKDGTR 303 (419)
T ss_pred -----------------HHHhhcceEEEEecccCCHHHHHhhH-HHHhhCCCcce
Confidence 11234789999999999998777665 44444555543
No 453
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=43.81 E-value=1.5e+02 Score=26.06 Aligned_cols=60 Identities=12% Similarity=0.117 Sum_probs=37.1
Q ss_pred CCCCeEEEEcCccCHHHHHHHHh----CCEEEEecC-chHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 119 FNGIISLELGAGTGLAGILLSRV----AWTVFLTDH-GNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~la~~----~~~V~~TD~-~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
++++++|=.|+ +|.+|..+++. |.+|+++.. ++..++.+...+... ..++.+..+|..+.
T Consensus 4 ~~~~~~lItG~-s~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~D~~~~ 68 (247)
T PRK12935 4 LNGKVAIVTGG-AKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGKE------GHDVYAVQADVSKV 68 (247)
T ss_pred CCCCEEEEECC-CCHHHHHHHHHHHHcCCEEEEEcCCcHHHHHHHHHHHHhc------CCeEEEEECCCCCH
Confidence 56899999996 55556665543 788887643 344444433333222 24577788887765
No 454
>PRK07791 short chain dehydrogenase; Provisional
Probab=43.77 E-value=1.3e+02 Score=27.73 Aligned_cols=62 Identities=15% Similarity=0.176 Sum_probs=38.1
Q ss_pred CCCCCeEEEEcCccCHHHHH---HHHhCCEEEEecCch---------HHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 118 DFNGIISLELGAGTGLAGIL---LSRVAWTVFLTDHGN---------YILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~---la~~~~~V~~TD~~~---------~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
.++|+++|=.|++.|+-.-+ +++.|++|+++|.+. +.++.+...+... ..++.+...|..+.
T Consensus 3 ~l~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~Dv~~~ 76 (286)
T PRK07791 3 LLDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAA------GGEAVANGDDIADW 76 (286)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhc------CCceEEEeCCCCCH
Confidence 36789999999988764332 334488999998764 3344333333322 23456666666554
No 455
>PRK08303 short chain dehydrogenase; Provisional
Probab=43.66 E-value=1.1e+02 Score=28.71 Aligned_cols=33 Identities=27% Similarity=0.413 Sum_probs=25.0
Q ss_pred CCCCCeEEEEcCccCHHHHHHH----HhCCEEEEecCc
Q 019839 118 DFNGIISLELGAGTGLAGILLS----RVAWTVFLTDHG 151 (335)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~la----~~~~~V~~TD~~ 151 (335)
.++|+++|=.|++.|+ |..+| +.|.+|++++.+
T Consensus 5 ~l~~k~~lITGgs~GI-G~aia~~la~~G~~Vv~~~r~ 41 (305)
T PRK08303 5 PLRGKVALVAGATRGA-GRGIAVELGAAGATVYVTGRS 41 (305)
T ss_pred CCCCCEEEEeCCCchH-HHHHHHHHHHCCCEEEEEecc
Confidence 4689999999988774 44443 348899999886
No 456
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=43.65 E-value=1.4e+02 Score=26.57 Aligned_cols=60 Identities=17% Similarity=0.252 Sum_probs=35.7
Q ss_pred CCeEEEEcCccCHHHHHHH----HhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 121 GIISLELGAGTGLAGILLS----RVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 121 g~~VLELG~GtGL~gl~la----~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
+++||=.|++.| +|..++ ..|.+|+++|.+..-++.+...+..-.. ..++.+...|..+.
T Consensus 2 ~k~ilItG~~~~-IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~ 65 (259)
T PRK12384 2 NQVAVVIGGGQT-LGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYG----EGMAYGFGADATSE 65 (259)
T ss_pred CCEEEEECCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcC----CceeEEEEccCCCH
Confidence 568899997644 444433 3478999999987655544433322110 13466677776653
No 457
>PRK05875 short chain dehydrogenase; Provisional
Probab=43.65 E-value=1.4e+02 Score=26.88 Aligned_cols=62 Identities=19% Similarity=0.306 Sum_probs=39.1
Q ss_pred CCCCeEEEEcCccCHHHHHHH----HhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 119 FNGIISLELGAGTGLAGILLS----RVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~la----~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
+++++||=.|++.|+ |..++ ..|.+|++++.++.-++.....+..-.. ..++.+...|..+.
T Consensus 5 ~~~k~vlItGasg~I-G~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~----~~~~~~~~~Dl~~~ 70 (276)
T PRK05875 5 FQDRTYLVTGGGSGI-GKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKG----AGAVRYEPADVTDE 70 (276)
T ss_pred CCCCEEEEECCCcHH-HHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccC----CCceEEEEcCCCCH
Confidence 578999999986554 44443 3478999999986555544444322110 24567777777654
No 458
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=43.54 E-value=35 Score=32.79 Aligned_cols=35 Identities=14% Similarity=0.130 Sum_probs=26.2
Q ss_pred CCCCeEEEEcCc-cCHHHHHHHHh-CCEEEEecCchH
Q 019839 119 FNGIISLELGAG-TGLAGILLSRV-AWTVFLTDHGNY 153 (335)
Q Consensus 119 ~~g~~VLELG~G-tGL~gl~la~~-~~~V~~TD~~~~ 153 (335)
..|.+||=.|+| .|+..+.+|+. |++|++++.+++
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~ 218 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSN 218 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence 468888889987 56666666665 788998887753
No 459
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=43.49 E-value=86 Score=31.54 Aligned_cols=36 Identities=25% Similarity=0.302 Sum_probs=25.9
Q ss_pred CCCCCCeEEEEcCc-cCHH-HHHHHHhCCEEEEecCch
Q 019839 117 SDFNGIISLELGAG-TGLA-GILLSRVAWTVFLTDHGN 152 (335)
Q Consensus 117 ~~~~g~~VLELG~G-tGL~-gl~la~~~~~V~~TD~~~ 152 (335)
+.+.+++|+=+|+| +|.. ..++.+.|..|+++|...
T Consensus 11 ~~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 48 (473)
T PRK00141 11 PQELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNE 48 (473)
T ss_pred ccccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCCh
Confidence 55788999999988 5642 223344488999999764
No 460
>PLN00203 glutamyl-tRNA reductase
Probab=43.47 E-value=2.1e+02 Score=29.42 Aligned_cols=68 Identities=19% Similarity=0.156 Sum_probs=40.6
Q ss_pred cCCCCccceeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCc-cCHHHH-HHHHhC-CEEEEecCchHHHHHHHH
Q 019839 89 SLIPSVGLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAG-TGLAGI-LLSRVA-WTVFLTDHGNYILDNCAK 160 (335)
Q Consensus 89 ~~~~~~G~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~G-tGL~gl-~la~~~-~~V~~TD~~~~~l~~~~~ 160 (335)
|.+...+..+=-+|.-|+.-+... ..+.+++|+=+|+| .|..-+ .+...| .+|++++.+++-.+.+..
T Consensus 238 T~I~~~~vSv~s~Av~la~~~~~~----~~l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~ 308 (519)
T PLN00203 238 TNIASGAVSVSSAAVELALMKLPE----SSHASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALRE 308 (519)
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCC----CCCCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHH
Confidence 444455555555666666654321 23778999999997 342222 222335 479999999766555543
No 461
>PRK06940 short chain dehydrogenase; Provisional
Probab=43.22 E-value=1.2e+02 Score=27.73 Aligned_cols=56 Identities=23% Similarity=0.322 Sum_probs=34.7
Q ss_pred CeEEEEcCccCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 122 IISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 122 ~~VLELG~GtGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
+.+|=-|+| | +|..+++. |.+|+++|.++.-++.+...+... ..++.+..+|..+.
T Consensus 3 k~~lItGa~-g-IG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~------~~~~~~~~~Dv~d~ 61 (275)
T PRK06940 3 EVVVVIGAG-G-IGQAIARRVGAGKKVLLADYNEENLEAAAKTLREA------GFDVSTQEVDVSSR 61 (275)
T ss_pred CEEEEECCC-h-HHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhc------CCeEEEEEeecCCH
Confidence 456666764 4 56565544 789999999876555444443321 23566777777664
No 462
>PLN02214 cinnamoyl-CoA reductase
Probab=43.20 E-value=2.9e+02 Score=26.10 Aligned_cols=35 Identities=20% Similarity=0.132 Sum_probs=26.2
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHh----CCEEEEecCchH
Q 019839 118 DFNGIISLELGAGTGLAGILLSRV----AWTVFLTDHGNY 153 (335)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~la~~----~~~V~~TD~~~~ 153 (335)
..++++||=.|+ +|.+|-.+++. |.+|++++.+..
T Consensus 7 ~~~~~~vlVTGa-tGfIG~~l~~~L~~~G~~V~~~~r~~~ 45 (342)
T PLN02214 7 SPAGKTVCVTGA-GGYIASWIVKILLERGYTVKGTVRNPD 45 (342)
T ss_pred cCCCCEEEEECC-CcHHHHHHHHHHHHCcCEEEEEeCCch
Confidence 357889999887 67777665543 789999988753
No 463
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=42.88 E-value=30 Score=33.83 Aligned_cols=40 Identities=28% Similarity=0.501 Sum_probs=32.1
Q ss_pred CeEEEEcCc---cCHHHHHHHHhCCEEEEecCchHHHHHHHHH
Q 019839 122 IISLELGAG---TGLAGILLSRVAWTVFLTDHGNYILDNCAKN 161 (335)
Q Consensus 122 ~~VLELG~G---tGL~gl~la~~~~~V~~TD~~~~~l~~~~~N 161 (335)
++|+=+|+| .|.+|-.+++.|..|++.|..+.+++.++.+
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~~~~~v~aL~~q 43 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVDVNQELIDALNKR 43 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCCCeEEEEECCHHHHHHHhcC
Confidence 468889999 3467888888899999999988877777544
No 464
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=42.73 E-value=95 Score=28.81 Aligned_cols=43 Identities=14% Similarity=0.114 Sum_probs=30.5
Q ss_pred CCCCCCeEEEEcCc-cCHHHHHHHHh-CCEEEEecCchHHHHHHH
Q 019839 117 SDFNGIISLELGAG-TGLAGILLSRV-AWTVFLTDHGNYILDNCA 159 (335)
Q Consensus 117 ~~~~g~~VLELG~G-tGL~gl~la~~-~~~V~~TD~~~~~l~~~~ 159 (335)
..-+|.+||=+||| .|...+.+|+. |.+|++++.+++.++.++
T Consensus 159 ~~~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~ 203 (330)
T cd08245 159 GPRPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELAR 203 (330)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 34567889999886 55554445554 789999998877766663
No 465
>PRK09072 short chain dehydrogenase; Provisional
Probab=42.63 E-value=1.4e+02 Score=26.75 Aligned_cols=60 Identities=17% Similarity=0.153 Sum_probs=38.7
Q ss_pred CCCCeEEEEcCccCHHHHH---HHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 119 FNGIISLELGAGTGLAGIL---LSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~---la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
.++++||=.|++.|+-.-+ ++..|.+|++++.++.-++.+..-+. . ..++.+...|..+.
T Consensus 3 ~~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~-----~~~~~~~~~D~~d~ 65 (263)
T PRK09072 3 LKDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARLP--Y-----PGRHRWVVADLTSE 65 (263)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHh--c-----CCceEEEEccCCCH
Confidence 4678899999876653322 33448899999998766655543331 1 24566777776654
No 466
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=42.41 E-value=59 Score=31.00 Aligned_cols=62 Identities=16% Similarity=0.062 Sum_probs=41.8
Q ss_pred cceeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHH
Q 019839 95 GLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQ 163 (335)
Q Consensus 95 G~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~ 163 (335)
=-|+|+...+=.+.| ..-.|.+|.-+|+|---.--.+++.-++|.+.|+++.-+.+-+-.++
T Consensus 45 YpqiwEDp~Vdmeam-------~~g~ghrivtigSGGcn~L~ylsr~Pa~id~VDlN~ahiAln~lkla 106 (414)
T COG5379 45 YPQIWEDPSVDMEAM-------QLGIGHRIVTIGSGGCNMLAYLSRAPARIDVVDLNPAHIALNRLKLA 106 (414)
T ss_pred cccccCCccccHHHH-------hcCCCcEEEEecCCcchHHHHhhcCCceeEEEeCCHHHHHHHHHHHH
Confidence 347777765555544 23467899999998553444556667899999999976665554443
No 467
>PRK08589 short chain dehydrogenase; Validated
Probab=42.39 E-value=1.5e+02 Score=26.84 Aligned_cols=59 Identities=15% Similarity=0.246 Sum_probs=38.1
Q ss_pred CCCCeEEEEcCccCHHHHHHH----HhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 119 FNGIISLELGAGTGLAGILLS----RVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~la----~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
++|+++|=.|++.|+ |..++ +.|.+|++++.+ .-++.+...+... ..++.+..+|-.+.
T Consensus 4 l~~k~vlItGas~gI-G~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~------~~~~~~~~~Dl~~~ 66 (272)
T PRK08589 4 LENKVAVITGASTGI-GQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSN------GGKAKAYHVDISDE 66 (272)
T ss_pred CCCCEEEEECCCchH-HHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhc------CCeEEEEEeecCCH
Confidence 678999999987765 44433 348899999998 4444444444322 23566677776554
No 468
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=42.11 E-value=1.2e+02 Score=27.84 Aligned_cols=44 Identities=20% Similarity=0.203 Sum_probs=28.0
Q ss_pred CCCCCeEEEEcCccCHHHHH---HHHhCCEEEEecCchHHHHHHHHHH
Q 019839 118 DFNGIISLELGAGTGLAGIL---LSRVAWTVFLTDHGNYILDNCAKNV 162 (335)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~---la~~~~~V~~TD~~~~~l~~~~~Nv 162 (335)
..++++|+=+|+| |....+ ++..|.+|+.++.+++-.+.+...+
T Consensus 114 ~~~~k~vliiGaG-g~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~ 160 (270)
T TIGR00507 114 LRPNQRVLIIGAG-GAARAVALPLLKADCNVIIANRTVSKAEELAERF 160 (270)
T ss_pred CccCCEEEEEcCc-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 4568899999998 432222 2233779999999865444444333
No 469
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=41.34 E-value=97 Score=30.18 Aligned_cols=33 Identities=30% Similarity=0.366 Sum_probs=24.6
Q ss_pred CCCCeEEEEcCc-cC-HHHHHHHHhC-CEEEEecCc
Q 019839 119 FNGIISLELGAG-TG-LAGILLSRVA-WTVFLTDHG 151 (335)
Q Consensus 119 ~~g~~VLELG~G-tG-L~gl~la~~~-~~V~~TD~~ 151 (335)
+++++||=+||| .| .+...+++.| .+++..|.+
T Consensus 133 l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 133 LLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred HhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 578899999998 44 3445556666 489999987
No 470
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=41.17 E-value=1.7e+02 Score=25.37 Aligned_cols=60 Identities=12% Similarity=0.066 Sum_probs=37.5
Q ss_pred CCCCeEEEEcCccCHHHHHHHHh----CCEEEEec-CchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 119 FNGIISLELGAGTGLAGILLSRV----AWTVFLTD-HGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~la~~----~~~V~~TD-~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
++.++||=.|+ +|.+|..+++. |.+|++.. .+...++.+...+... ..++.+...|..+.
T Consensus 4 ~~~~~vlItGa-sg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~ 68 (249)
T PRK12825 4 LMGRVALVTGA-ARGLGRAIALRLARAGADVVVHYRSDEEAAEELVEAVEAL------GRRAQAVQADVTDK 68 (249)
T ss_pred CCCCEEEEeCC-CchHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhc------CCceEEEECCcCCH
Confidence 46678998886 66677776654 67876644 4444555555544432 24567777777654
No 471
>PRK12829 short chain dehydrogenase; Provisional
Probab=41.14 E-value=1.5e+02 Score=26.31 Aligned_cols=60 Identities=18% Similarity=0.294 Sum_probs=38.8
Q ss_pred CCCCCCeEEEEcCccCHHHHHHHH----hCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 117 SDFNGIISLELGAGTGLAGILLSR----VAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 117 ~~~~g~~VLELG~GtGL~gl~la~----~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
..++++++|=.|++.|+ |..+++ .|.+|++++.++..++.+..... ..++.+...|+.+.
T Consensus 7 ~~~~~~~vlItGa~g~i-G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~--------~~~~~~~~~D~~~~ 70 (264)
T PRK12829 7 KPLDGLRVLVTGGASGI-GRAIAEAFAEAGARVHVCDVSEAALAATAARLP--------GAKVTATVADVADP 70 (264)
T ss_pred hccCCCEEEEeCCCCcH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHh--------cCceEEEEccCCCH
Confidence 34788999999997555 444333 37899999998765554433221 12456677777664
No 472
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=40.88 E-value=60 Score=31.01 Aligned_cols=43 Identities=16% Similarity=0.210 Sum_probs=37.1
Q ss_pred CCeEEEEcCccCHHHHHHHHhCC-EEEEecCchHHHHHHHHHHH
Q 019839 121 GIISLELGAGTGLAGILLSRVAW-TVFLTDHGNYILDNCAKNVQ 163 (335)
Q Consensus 121 g~~VLELG~GtGL~gl~la~~~~-~V~~TD~~~~~l~~~~~Nv~ 163 (335)
..++++|=||.|-.++.+...|. -+.+.|+++.+++..+.|..
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~ 46 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFP 46 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCC
Confidence 35899999999999999998885 57888999999988888765
No 473
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=40.81 E-value=1.9e+02 Score=26.96 Aligned_cols=63 Identities=17% Similarity=0.230 Sum_probs=39.1
Q ss_pred CCCCCCeEEEEcCccCHHHH---HHHHhCCEEEEecCch-HHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 117 SDFNGIISLELGAGTGLAGI---LLSRVAWTVFLTDHGN-YILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 117 ~~~~g~~VLELG~GtGL~gl---~la~~~~~V~~TD~~~-~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
..++|+++|=.|++.|+-.- .+++.|++|++.|... ..++.+...+... ..++.+...|..+.
T Consensus 8 ~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~------g~~~~~~~~Dv~d~ 74 (306)
T PRK07792 8 TDLSGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAA------GAKAVAVAGDISQR 74 (306)
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhc------CCeEEEEeCCCCCH
Confidence 45789999999998775332 2344488999999753 3343333333322 24566667766553
No 474
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=40.79 E-value=1.3e+02 Score=28.99 Aligned_cols=41 Identities=20% Similarity=0.285 Sum_probs=28.0
Q ss_pred CCCCCeEEEEcCc-cCH-HHHHHHHhC-CEEEEecCchHHHHHH
Q 019839 118 DFNGIISLELGAG-TGL-AGILLSRVA-WTVFLTDHGNYILDNC 158 (335)
Q Consensus 118 ~~~g~~VLELG~G-tGL-~gl~la~~~-~~V~~TD~~~~~l~~~ 158 (335)
.+++.-|+=+||| .|- +.-.+++.| .++...|.+.-.|..+
T Consensus 71 kl~~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqVSlsSL 114 (430)
T KOG2018|consen 71 KLTNSYVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQVSLSSL 114 (430)
T ss_pred HhcCcEEEEEecCchhHHHHHHHHHhcCceEEEechhhccHhhh
Confidence 3578889999998 673 333344455 5899999986555554
No 475
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=40.78 E-value=1.7e+02 Score=25.96 Aligned_cols=60 Identities=20% Similarity=0.267 Sum_probs=38.3
Q ss_pred CCCCeEEEEcCccCHHHHHH----HHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 119 FNGIISLELGAGTGLAGILL----SRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~l----a~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
+++++||=.|+..|+ |..+ ++.|.+|++++.++.-++.+...+... ..++.+...|..+.
T Consensus 5 ~~~~~vlItGasg~i-G~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dl~~~ 68 (262)
T PRK13394 5 LNGKTAVVTGAASGI-GKEIALELARAGAAVAIADLNQDGANAVADEINKA------GGKAIGVAMDVTNE 68 (262)
T ss_pred CCCCEEEEECCCChH-HHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhc------CceEEEEECCCCCH
Confidence 578899988875443 3333 334889999999986665554444322 23566667776654
No 476
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=40.71 E-value=1e+02 Score=29.49 Aligned_cols=39 Identities=18% Similarity=0.299 Sum_probs=26.6
Q ss_pred CCCCeEEEEcCc-cCHHHHHHHHh-CCEEEEecCchHHHHH
Q 019839 119 FNGIISLELGAG-TGLAGILLSRV-AWTVFLTDHGNYILDN 157 (335)
Q Consensus 119 ~~g~~VLELG~G-tGL~gl~la~~-~~~V~~TD~~~~~l~~ 157 (335)
..|.+||=.|+| .|+..+.+|+. |.+|++++.+++-...
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~ 219 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREE 219 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHH
Confidence 468899988776 56666666665 6788888877654433
No 477
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=40.69 E-value=63 Score=33.01 Aligned_cols=43 Identities=19% Similarity=0.196 Sum_probs=30.4
Q ss_pred CeEEEEcCcc-C-HHHHHHHHhCCEEEEecCchHHHHHHHHHHHH
Q 019839 122 IISLELGAGT-G-LAGILLSRVAWTVFLTDHGNYILDNCAKNVQL 164 (335)
Q Consensus 122 ~~VLELG~Gt-G-L~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~ 164 (335)
++|-=||+|+ | -.+..+++.|..|++.|.+++.++....++..
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~ 52 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAA 52 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 4577778873 3 23334556689999999999988877666543
No 478
>PRK07109 short chain dehydrogenase; Provisional
Probab=40.68 E-value=1.5e+02 Score=28.17 Aligned_cols=61 Identities=18% Similarity=0.197 Sum_probs=41.6
Q ss_pred CCCCCeEEEEcCccCHHHHHH----HHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 118 DFNGIISLELGAGTGLAGILL----SRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~l----a~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
.+++++||=.|++.|+ |..+ ++.|.+|++++.+++-++.+...+... ..++.+...|..+.
T Consensus 5 ~l~~k~vlITGas~gI-G~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~------g~~~~~v~~Dv~d~ 69 (334)
T PRK07109 5 PIGRQVVVITGASAGV-GRATARAFARRGAKVVLLARGEEGLEALAAEIRAA------GGEALAVVADVADA 69 (334)
T ss_pred CCCCCEEEEECCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHc------CCcEEEEEecCCCH
Confidence 3678899999986654 4333 344889999999987776666665432 24566667776654
No 479
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=40.67 E-value=54 Score=31.00 Aligned_cols=43 Identities=14% Similarity=0.112 Sum_probs=29.9
Q ss_pred CCCCCCeEEEEcCc-cCHHHHHHHHh-CC-EEEEecCchHHHHHHH
Q 019839 117 SDFNGIISLELGAG-TGLAGILLSRV-AW-TVFLTDHGNYILDNCA 159 (335)
Q Consensus 117 ~~~~g~~VLELG~G-tGL~gl~la~~-~~-~V~~TD~~~~~l~~~~ 159 (335)
...+|.+||=.|+| .|+..+.+|+. |. .|++||.+++-++.++
T Consensus 163 ~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~ 208 (351)
T cd08285 163 NIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAK 208 (351)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH
Confidence 34578899999876 45555555655 55 6999999876655554
No 480
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=39.93 E-value=84 Score=31.16 Aligned_cols=39 Identities=21% Similarity=0.220 Sum_probs=26.3
Q ss_pred CCCCCCeEEEEcCc-cCHHH-HHHHHhC-CEEEEecCchHHH
Q 019839 117 SDFNGIISLELGAG-TGLAG-ILLSRVA-WTVFLTDHGNYIL 155 (335)
Q Consensus 117 ~~~~g~~VLELG~G-tGL~g-l~la~~~-~~V~~TD~~~~~l 155 (335)
..+.+++|+=+||| .|..- ..++..| .+|++++.+++-.
T Consensus 176 ~~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra 217 (417)
T TIGR01035 176 GSLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERA 217 (417)
T ss_pred CCccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHH
Confidence 34788999999987 44322 2233346 7899999986543
No 481
>PRK06198 short chain dehydrogenase; Provisional
Probab=39.83 E-value=1.7e+02 Score=25.96 Aligned_cols=61 Identities=11% Similarity=0.162 Sum_probs=37.1
Q ss_pred CCCCCeEEEEcCccCHHHHHHH----HhCCE-EEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 118 DFNGIISLELGAGTGLAGILLS----RVAWT-VFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~la----~~~~~-V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
.+++++||=.|++.|+ |..++ ..|++ |++++.+++-+..+...+.. . ...+.+...|..+.
T Consensus 3 ~~~~k~vlItGa~g~i-G~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~-~-----~~~~~~~~~D~~~~ 68 (260)
T PRK06198 3 RLDGKVALVTGGTQGL-GAAIARAFAERGAAGLVICGRNAEKGEAQAAELEA-L-----GAKAVFVQADLSDV 68 (260)
T ss_pred CCCCcEEEEeCCCchH-HHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHh-c-----CCeEEEEEccCCCH
Confidence 3678999999976554 44433 33677 99999886544433333321 1 24566667776654
No 482
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=39.28 E-value=66 Score=24.20 Aligned_cols=42 Identities=24% Similarity=0.317 Sum_probs=22.4
Q ss_pred HHHHHHhhcCCCCCCCC-CeEEEEcCccC--HHHHHHHHh--CCEEEEecC
Q 019839 105 LADFVMHKMCTSSDFNG-IISLELGAGTG--LAGILLSRV--AWTVFLTDH 150 (335)
Q Consensus 105 La~~l~~~~~~~~~~~g-~~VLELG~GtG--L~gl~la~~--~~~V~~TD~ 150 (335)
..+|+... ..+.| |+||=+||-+| |.+-+++.. |+..+.+-+
T Consensus 26 qI~yvk~~----~~~~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~f 72 (78)
T PF12242_consen 26 QIEYVKSQ----GKINGPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSF 72 (78)
T ss_dssp HHHHHHHC-------TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE-
T ss_pred HHHHHHhc----CCCCCCceEEEEecCCcccHHHHHHHHhcCCCCEEEEee
Confidence 33455543 23365 89999999776 666555554 456666544
No 483
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=39.21 E-value=1.4e+02 Score=27.83 Aligned_cols=33 Identities=18% Similarity=0.265 Sum_probs=23.9
Q ss_pred CCCeEEEEcCccCHHHHHHHHh----CCEEEEecCchH
Q 019839 120 NGIISLELGAGTGLAGILLSRV----AWTVFLTDHGNY 153 (335)
Q Consensus 120 ~g~~VLELG~GtGL~gl~la~~----~~~V~~TD~~~~ 153 (335)
.|++||=.|+ +|.+|-.+++. |.+|++++.++.
T Consensus 4 ~~k~vlVtG~-~G~IG~~l~~~L~~~G~~V~~~~r~~~ 40 (325)
T PLN02989 4 GGKVVCVTGA-SGYIASWIVKLLLFRGYTINATVRDPK 40 (325)
T ss_pred CCCEEEEECC-chHHHHHHHHHHHHCCCEEEEEEcCCc
Confidence 4789999984 66667666553 789988877654
No 484
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=38.86 E-value=1.7e+02 Score=25.73 Aligned_cols=58 Identities=16% Similarity=0.165 Sum_probs=37.0
Q ss_pred CCCCeEEEEcCccCHHHHHHHH----hCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 119 FNGIISLELGAGTGLAGILLSR----VAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~la~----~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
++|++||=.|++.|+ |..+++ .|.+|++++.++ .+.+...+... ..++.+...|..+.
T Consensus 3 ~~~k~vlItGas~gI-G~~ia~~l~~~G~~vi~~~r~~--~~~~~~~~~~~------~~~~~~~~~D~~~~ 64 (248)
T TIGR01832 3 LEGKVALVTGANTGL-GQGIAVGLAEAGADIVGAGRSE--PSETQQQVEAL------GRRFLSLTADLSDI 64 (248)
T ss_pred CCCCEEEEECCCchH-HHHHHHHHHHCCCEEEEEcCch--HHHHHHHHHhc------CCceEEEECCCCCH
Confidence 688999999997664 444444 378999999864 22333333221 24567777777664
No 485
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=38.71 E-value=83 Score=30.49 Aligned_cols=52 Identities=23% Similarity=0.345 Sum_probs=31.2
Q ss_pred EEEEcCccCHHHHHHHHh----C-C-EEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 124 SLELGAGTGLAGILLSRV----A-W-TVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 124 VLELG~GtGL~gl~la~~----~-~-~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
|+=||| |.+|-.+++. . . +|++.|.+.+-++.+...+ + ..++....+|..+.
T Consensus 1 IlvlG~--G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~--~------~~~~~~~~~d~~~~ 58 (386)
T PF03435_consen 1 ILVLGA--GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKL--L------GDRVEAVQVDVNDP 58 (386)
T ss_dssp EEEE----SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT----T------TTTEEEEE--TTTH
T ss_pred CEEEcC--cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhc--c------ccceeEEEEecCCH
Confidence 567888 6666555544 2 2 8999999976665554333 1 46788889988765
No 486
>PRK08265 short chain dehydrogenase; Provisional
Probab=38.66 E-value=1.7e+02 Score=26.33 Aligned_cols=57 Identities=12% Similarity=0.099 Sum_probs=36.9
Q ss_pred CCCCeEEEEcCccCHHHHHH----HHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 119 FNGIISLELGAGTGLAGILL----SRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~l----a~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
++++++|=.|++.|+ |..+ ++.|.+|+++|.+++-++.+..-+ ..++.+...|..+.
T Consensus 4 ~~~k~vlItGas~gI-G~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---------~~~~~~~~~Dl~~~ 64 (261)
T PRK08265 4 LAGKVAIVTGGATLI-GAAVARALVAAGARVAIVDIDADNGAAVAASL---------GERARFIATDITDD 64 (261)
T ss_pred CCCCEEEEECCCChH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---------CCeeEEEEecCCCH
Confidence 578999999976553 4443 334889999999865444332221 13466777787765
No 487
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=38.53 E-value=1.1e+02 Score=28.90 Aligned_cols=41 Identities=20% Similarity=0.279 Sum_probs=27.5
Q ss_pred CCCCeEEEEcCc-cCHHHHHHHHh-CC-EEEEecCchHHHHHHH
Q 019839 119 FNGIISLELGAG-TGLAGILLSRV-AW-TVFLTDHGNYILDNCA 159 (335)
Q Consensus 119 ~~g~~VLELG~G-tGL~gl~la~~-~~-~V~~TD~~~~~l~~~~ 159 (335)
.+|.+||=+|+| +|...+.+|+. |. +|++++.++.-.+.++
T Consensus 174 ~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~ 217 (350)
T cd08240 174 VADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAK 217 (350)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH
Confidence 367889888765 34444445554 65 7999998876666653
No 488
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=38.47 E-value=46 Score=30.06 Aligned_cols=46 Identities=13% Similarity=0.107 Sum_probs=34.3
Q ss_pred CCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHc
Q 019839 120 NGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLN 165 (335)
Q Consensus 120 ~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N 165 (335)
+.....|+|||-|-+-+.++.. -.-+++.++-..+-+.++..|++-
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~AL 107 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQAL 107 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHH
Confidence 4467999999999666666665 246888888888888887777553
No 489
>PRK05650 short chain dehydrogenase; Provisional
Probab=38.43 E-value=1.7e+02 Score=26.33 Aligned_cols=57 Identities=19% Similarity=0.218 Sum_probs=35.9
Q ss_pred CeEEEEcCccCHHHHHHH----HhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 122 IISLELGAGTGLAGILLS----RVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 122 ~~VLELG~GtGL~gl~la----~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
++||=.|+..|+ |..++ +.|.+|++++.++.-++.+...+...+ .++.+...|+.+.
T Consensus 1 ~~vlVtGasggI-G~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~------~~~~~~~~D~~~~ 61 (270)
T PRK05650 1 NRVMITGAASGL-GRAIALRWAREGWRLALADVNEEGGEETLKLLREAG------GDGFYQRCDVRDY 61 (270)
T ss_pred CEEEEecCCChH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CceEEEEccCCCH
Confidence 367777875554 44433 348899999998766655554444332 4566777787664
No 490
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=38.15 E-value=52 Score=31.03 Aligned_cols=34 Identities=24% Similarity=0.147 Sum_probs=22.2
Q ss_pred CCCCeEEEEcCc-cCH-HHHHHHHhC-CEEEEecCch
Q 019839 119 FNGIISLELGAG-TGL-AGILLSRVA-WTVFLTDHGN 152 (335)
Q Consensus 119 ~~g~~VLELG~G-tGL-~gl~la~~~-~~V~~TD~~~ 152 (335)
++..+||=+||| .|. +.-.++..| +++++.|.+.
T Consensus 17 L~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ 53 (286)
T cd01491 17 LQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKP 53 (286)
T ss_pred HhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Confidence 567799999987 342 223334445 5899988764
No 491
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=38.02 E-value=62 Score=31.19 Aligned_cols=42 Identities=19% Similarity=0.152 Sum_probs=32.1
Q ss_pred CCCCCeEEEEcCc-cCHHHHHHHHh--CCEEEEecCchHHHHHHH
Q 019839 118 DFNGIISLELGAG-TGLAGILLSRV--AWTVFLTDHGNYILDNCA 159 (335)
Q Consensus 118 ~~~g~~VLELG~G-tGL~gl~la~~--~~~V~~TD~~~~~l~~~~ 159 (335)
.-+|.+|-=.|.| .||.-+.-|+. +.++++.|++++=.+.++
T Consensus 190 v~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak 234 (375)
T KOG0022|consen 190 VEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAK 234 (375)
T ss_pred cCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHH
Confidence 4578888888888 67777777776 469999999987666554
No 492
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=37.65 E-value=46 Score=33.24 Aligned_cols=36 Identities=17% Similarity=0.089 Sum_probs=27.9
Q ss_pred CCCCCCeEEEEcCc-cCHH--HHHHHHhCCEEEEecCch
Q 019839 117 SDFNGIISLELGAG-TGLA--GILLSRVAWTVFLTDHGN 152 (335)
Q Consensus 117 ~~~~g~~VLELG~G-tGL~--gl~la~~~~~V~~TD~~~ 152 (335)
...++++|+=+|.| +|.. ...+.+.|++|+++|..+
T Consensus 3 ~~~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~ 41 (461)
T PRK00421 3 ELRRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKE 41 (461)
T ss_pred CcCCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCC
Confidence 45788899999988 7765 345666699999999874
No 493
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=37.57 E-value=1.4e+02 Score=26.94 Aligned_cols=62 Identities=8% Similarity=0.044 Sum_probs=34.6
Q ss_pred CCCCeEEEEcCcc-CHHHHHHHH----hCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 119 FNGIISLELGAGT-GLAGILLSR----VAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 119 ~~g~~VLELG~Gt-GL~gl~la~----~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
++|+++|=.|++. +-+|..+|+ .|++|++++.+....+.++.-..... ..++.+..+|-.+.
T Consensus 5 ~~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~Dv~d~ 71 (257)
T PRK08594 5 LEGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLE-----GQESLLLPCDVTSD 71 (257)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcC-----CCceEEEecCCCCH
Confidence 5789999999862 333555444 48899998764321122222222211 13456666776554
No 494
>PRK05872 short chain dehydrogenase; Provisional
Probab=37.41 E-value=1.6e+02 Score=27.20 Aligned_cols=61 Identities=18% Similarity=0.155 Sum_probs=38.8
Q ss_pred CCCCCCeEEEEcCccCHHHHHHH----HhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 117 SDFNGIISLELGAGTGLAGILLS----RVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 117 ~~~~g~~VLELG~GtGL~gl~la----~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
..++|++||=.|++.|+ |..++ +.|++|++++.+++-++.+...+.. ...+.....|..+.
T Consensus 5 ~~l~gk~vlItGas~gI-G~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~-------~~~~~~~~~Dv~d~ 69 (296)
T PRK05872 5 TSLAGKVVVVTGAARGI-GAELARRLHARGAKLALVDLEEAELAALAAELGG-------DDRVLTVVADVTDL 69 (296)
T ss_pred CCCCCCEEEEECCCchH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC-------CCcEEEEEecCCCH
Confidence 34789999999987664 44433 3488999999987666555443321 13344555676654
No 495
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=37.39 E-value=1.4e+02 Score=27.05 Aligned_cols=40 Identities=18% Similarity=0.084 Sum_probs=25.5
Q ss_pred CCCCeEEEEcCccCHHH-H-HHHHhCCE--EEEecCchHHHHHH
Q 019839 119 FNGIISLELGAGTGLAG-I-LLSRVAWT--VFLTDHGNYILDNC 158 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~g-l-~la~~~~~--V~~TD~~~~~l~~~ 158 (335)
.+|++||=+|.|.-... + .+.+.|++ |++-++++++.+.+
T Consensus 23 ~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~ 66 (223)
T PRK05562 23 SNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLK 66 (223)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHH
Confidence 47899999999953332 2 23344664 55668887766543
No 496
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=37.33 E-value=60 Score=26.56 Aligned_cols=30 Identities=27% Similarity=0.318 Sum_probs=19.1
Q ss_pred eEEEEcCc-cC-HHHHHHHHhC-CEEEEecCch
Q 019839 123 ISLELGAG-TG-LAGILLSRVA-WTVFLTDHGN 152 (335)
Q Consensus 123 ~VLELG~G-tG-L~gl~la~~~-~~V~~TD~~~ 152 (335)
+|+=+||| .| -+...+++.| .+++..|.+.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 46778887 44 2334455556 4899999873
No 497
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=37.32 E-value=1.1e+02 Score=29.33 Aligned_cols=42 Identities=24% Similarity=0.333 Sum_probs=28.3
Q ss_pred CCCCCeEEEEcCc-cCHHHHHHHHh-CC-EEEEecCchHHHHHHH
Q 019839 118 DFNGIISLELGAG-TGLAGILLSRV-AW-TVFLTDHGNYILDNCA 159 (335)
Q Consensus 118 ~~~g~~VLELG~G-tGL~gl~la~~-~~-~V~~TD~~~~~l~~~~ 159 (335)
...|.+||=.|+| .|...+.+|+. |. .|+++|.++.-++.++
T Consensus 184 ~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~ 228 (365)
T cd08278 184 PRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAK 228 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH
Confidence 3468899998875 35555555554 66 6999999876555443
No 498
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=37.09 E-value=35 Score=32.27 Aligned_cols=30 Identities=23% Similarity=0.201 Sum_probs=18.6
Q ss_pred eEEEEcCc-cC-HHHHHHHHhC-CEEEEecCch
Q 019839 123 ISLELGAG-TG-LAGILLSRVA-WTVFLTDHGN 152 (335)
Q Consensus 123 ~VLELG~G-tG-L~gl~la~~~-~~V~~TD~~~ 152 (335)
+||=+||| .| -+.-.+++.| .+++.+|.+.
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~ 33 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDT 33 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCE
Confidence 47888888 34 2223344445 5888888764
No 499
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=37.08 E-value=3.6e+02 Score=25.29 Aligned_cols=58 Identities=12% Similarity=0.011 Sum_probs=34.4
Q ss_pred CCCCeEEEEcCccCHHHHHHHHh----C--CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839 119 FNGIISLELGAGTGLAGILLSRV----A--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (335)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~la~~----~--~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (335)
++|++||=.|+ +|.+|-.+++. | .+|++.|.++.-...+.... + ..++.+...|..+.
T Consensus 2 ~~~k~vLVTGa-tG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~--~------~~~~~~v~~Dl~d~ 65 (324)
T TIGR03589 2 FNNKSILITGG-TGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKF--P------APCLRFFIGDVRDK 65 (324)
T ss_pred cCCCEEEEeCC-CCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHh--C------CCcEEEEEccCCCH
Confidence 46889998887 56666665553 3 58999987643332222111 1 13466666666553
No 500
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=37.06 E-value=73 Score=30.71 Aligned_cols=42 Identities=17% Similarity=0.226 Sum_probs=28.8
Q ss_pred CCCCCCeEEEEcCc-cCHHHHHHHHh-CC-EEEEecCchHHHHHH
Q 019839 117 SDFNGIISLELGAG-TGLAGILLSRV-AW-TVFLTDHGNYILDNC 158 (335)
Q Consensus 117 ~~~~g~~VLELG~G-tGL~gl~la~~-~~-~V~~TD~~~~~l~~~ 158 (335)
....|.+||=.|+| .|+..+.+|+. |. +|+.+|.+++-++.+
T Consensus 187 ~~~~g~~VlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~a 231 (373)
T cd08299 187 KVTPGSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDINKDKFAKA 231 (373)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH
Confidence 34568889888775 34444445544 66 899999887666665
Done!