Query 019840
Match_columns 335
No_of_seqs 228 out of 569
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 04:57:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019840.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019840hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0773 Transcription factor M 100.0 1.4E-32 2.9E-37 263.8 2.0 246 66-325 45-300 (342)
2 PF03791 KNOX2: KNOX2 domain ; 99.9 9.1E-25 2E-29 161.8 7.1 50 126-179 3-52 (52)
3 KOG0774 Transcription factor P 99.9 3.6E-23 7.7E-28 195.6 16.4 206 69-325 27-249 (334)
4 PF03790 KNOX1: KNOX1 domain ; 99.8 5.3E-22 1.2E-26 143.1 3.1 43 71-113 1-43 (45)
5 PF05920 Homeobox_KN: Homeobox 99.7 5E-18 1.1E-22 119.4 1.0 40 276-321 1-40 (40)
6 KOG0775 Transcription factor S 99.4 3.4E-13 7.3E-18 128.8 4.1 58 258-324 162-233 (304)
7 cd00086 homeodomain Homeodomai 99.2 5E-12 1.1E-16 91.3 3.3 56 259-323 1-56 (59)
8 smart00389 HOX Homeodomain. DN 99.2 9.6E-12 2.1E-16 89.6 3.5 54 260-322 2-55 (56)
9 PF00046 Homeobox: Homeobox do 99.0 3E-10 6.6E-15 82.7 2.4 55 259-322 1-55 (57)
10 PF03789 ELK: ELK domain ; In 98.1 1.7E-06 3.7E-11 54.4 1.7 22 236-257 1-22 (22)
11 KOG0773 Transcription factor M 97.9 1.7E-06 3.7E-11 83.8 -0.3 60 258-324 95-154 (342)
12 TIGR01565 homeo_ZF_HD homeobox 97.7 7.6E-05 1.6E-09 56.8 4.7 53 258-319 1-57 (58)
13 PF03792 PBC: PBC domain; Int 96.8 0.018 3.8E-07 53.4 11.5 144 69-257 25-190 (191)
14 KOG2252 CCAAT displacement pro 96.7 0.0011 2.5E-08 69.1 3.2 56 259-323 421-476 (558)
15 COG5576 Homeodomain-containing 96.3 0.0021 4.6E-08 57.5 2.3 58 259-325 52-109 (156)
16 PF11569 Homez: Homeodomain le 95.8 0.0037 8E-08 47.6 1.0 42 270-320 10-51 (56)
17 KOG0483 Transcription factor H 95.3 0.012 2.5E-07 54.8 2.6 56 258-322 50-105 (198)
18 KOG0493 Transcription factor E 95.2 0.015 3.2E-07 56.7 3.2 55 259-322 247-301 (342)
19 KOG3802 Transcription factor O 95.0 0.029 6.3E-07 57.0 4.4 57 257-322 293-349 (398)
20 KOG0842 Transcription factor t 94.9 0.025 5.5E-07 55.8 3.6 53 258-319 153-205 (307)
21 KOG0485 Transcription factor N 94.0 0.032 6.9E-07 53.2 2.2 53 258-319 104-156 (268)
22 KOG0843 Transcription factor E 93.8 0.048 1E-06 50.5 2.9 53 259-320 103-155 (197)
23 KOG0486 Transcription factor P 93.6 0.049 1.1E-06 54.1 2.7 51 260-319 114-164 (351)
24 KOG0487 Transcription factor A 92.9 0.075 1.6E-06 52.6 2.8 54 259-322 236-290 (308)
25 KOG0492 Transcription factor M 92.4 0.09 1.9E-06 49.9 2.5 54 258-320 139-197 (246)
26 KOG0850 Transcription factor D 92.2 0.11 2.4E-06 49.7 2.9 49 262-319 126-174 (245)
27 KOG2251 Homeobox transcription 92.2 0.17 3.6E-06 48.2 4.0 51 260-319 39-89 (228)
28 KOG0488 Transcription factor B 90.7 0.2 4.4E-06 49.3 3.1 49 262-319 176-224 (309)
29 KOG0490 Transcription factor, 90.0 0.21 4.6E-06 44.8 2.4 56 256-320 58-113 (235)
30 KOG4577 Transcription factor L 87.6 0.29 6.3E-06 48.5 1.7 78 227-319 142-219 (383)
31 KOG1168 Transcription factor A 86.8 0.43 9.3E-06 47.4 2.3 54 257-319 308-361 (385)
32 KOG0849 Transcription factor P 86.6 0.47 1E-05 47.5 2.5 51 261-320 179-229 (354)
33 KOG0491 Transcription factor B 86.3 0.36 7.8E-06 44.5 1.4 54 257-319 99-152 (194)
34 KOG0489 Transcription factor z 85.9 0.31 6.8E-06 46.6 0.9 54 258-320 159-212 (261)
35 KOG0494 Transcription factor C 82.7 1.1 2.3E-05 44.1 2.9 49 262-319 145-193 (332)
36 KOG0848 Transcription factor C 82.6 0.44 9.4E-06 46.8 0.3 32 282-319 220-251 (317)
37 KOG0484 Transcription factor P 55.3 9.2 0.0002 33.2 2.2 49 262-319 21-69 (125)
38 KOG0847 Transcription factor, 49.3 9.1 0.0002 37.0 1.4 47 264-319 173-219 (288)
39 KOG4445 Uncharacterized conser 46.1 43 0.00093 33.9 5.5 47 132-180 134-180 (368)
40 PF07425 Pardaxin: Pardaxin; 43.6 16 0.00034 24.9 1.4 19 73-91 5-23 (33)
41 KOG0490 Transcription factor, 39.0 26 0.00055 31.4 2.6 45 272-322 164-208 (235)
42 PF12022 DUF3510: Domain of un 38.0 1.6E+02 0.0035 25.2 7.2 20 161-180 80-99 (125)
43 PF05190 MutS_IV: MutS family 37.8 54 0.0012 25.1 3.9 25 129-153 1-25 (92)
44 KOG4040 NADH:ubiquinone oxidor 35.7 24 0.00052 32.6 1.9 37 264-300 20-57 (186)
45 PF13097 CENP-U: CENP-A nucleo 35.3 1E+02 0.0022 28.7 5.8 46 130-178 102-148 (175)
46 PF11348 DUF3150: Protein of u 31.2 2.6E+02 0.0056 27.0 8.2 20 132-151 99-118 (257)
47 PF11288 DUF3089: Protein of u 28.0 18 0.00039 34.1 -0.3 28 70-101 110-137 (207)
48 KOG3623 Homeobox transcription 27.8 48 0.0011 37.2 2.8 42 270-320 568-609 (1007)
49 PF12362 DUF3646: DNA polymera 25.7 65 0.0014 27.8 2.7 22 69-90 87-108 (117)
50 PF12323 HTH_OrfB_IS605: Helix 25.0 16 0.00034 25.7 -0.9 32 284-322 9-40 (46)
51 COG1103 Archaea-specific pyrid 25.0 40 0.00087 34.0 1.5 60 242-301 3-77 (382)
52 KOG1146 Homeobox protein [Gene 25.0 55 0.0012 38.7 2.7 63 260-331 905-968 (1406)
53 PF02290 SRP14: Signal recogni 24.0 56 0.0012 26.9 2.0 18 130-147 71-88 (93)
54 KOG4460 Nuclear pore complex, 23.4 1.4E+02 0.0031 32.6 5.2 38 134-178 568-605 (741)
55 PF07042 TrfA: TrfA protein; 22.4 79 0.0017 31.2 3.0 49 262-319 208-256 (282)
56 PF10782 DUF2602: Protein of u 21.6 58 0.0013 25.2 1.5 40 132-177 8-53 (58)
57 COG5661 Predicted secreted Zn- 21.2 2.6E+02 0.0057 26.6 6.0 45 128-179 108-152 (210)
No 1
>KOG0773 consensus Transcription factor MEIS1 and related HOX domain proteins [Transcription]
Probab=99.97 E-value=1.4e-32 Score=263.82 Aligned_cols=246 Identities=19% Similarity=0.176 Sum_probs=177.5
Q ss_pred hhhhhHHHHHHHhcCCChHHHHHHHHhchhccCCCCchhhHHHHHhhhhhHHhhhhhccC-----CCcCCChhHHHHHHH
Q 019840 66 EDWETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVAN-----GRVLDDKELDQFMTH 140 (335)
Q Consensus 66 ~~~e~~~iKAkI~sHPlYp~LL~AyidC~KVGAPpevv~rld~~l~~~~~~~~k~~~~~~-----~~~~~DPELDqFMea 140 (335)
..+.....|+.+.+||+|..++.||++|.+++.|.+.+.+++............+...+. ...+.+++|+.||..
T Consensus 45 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~s~~~~~~~~~~~~~~~~~k 124 (342)
T KOG0773|consen 45 IMVSLASSKYLTAAQELLDEFCSAGLDCLKGKMPYDPVPRSPASLSPPEDKGARRGNATRESATLKAWLEEHRLNPYPSK 124 (342)
T ss_pred cccccccccccccchhHHhHHhhccccccccccCcCccccccccccCccccccccccccccccccccchhhhhhccCchH
Confidence 455667899999999999999999999999999999998877655433222222221111 136789999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCCCCchhhccC---CCCCccCCCCCCCCCCCC
Q 019840 141 YVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSPGESTGATMSDDDEDQVD---SDTNFFDGSLDGPDSMGF 217 (335)
Q Consensus 141 Yc~~L~kykeEL~kP~~~~~~EA~~F~~~iE~QL~~L~~~s~~e~t~~~~Sdde~~~~~---s~~~~~~g~~~~~d~~~~ 217 (335)
|+.+|..+...|+..+. -++++.++++|+..+...++..+......+...+.++.+. +.....+ +.+++
T Consensus 125 ~~~~ll~~~~~~~~~~~--~~~~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~------~~~~~ 196 (342)
T KOG0773|consen 125 LEKILLAVITKLTLTQV--STWFANARRRLKKELKMTWGPTPLALDGISRHFSDLEKEKAIGGQLSSSE------ELLGE 196 (342)
T ss_pred HHHHHHHHHHHhhhhhH--HHHHHHHHHHHHhccCCCCCCccccccchhhhhhhhhhcccccccccccc------ccccc
Confidence 99999999999999863 3899999999999999988765544333322222211100 0000000 11111
Q ss_pred CCCCCCchhhhhH--HHhhHHHHHHHHhhhhhhhhhHHHHHHhhccCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHH
Q 019840 218 GPLVPTESERSLM--ERVRHELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCI 295 (335)
Q Consensus 218 g~~~p~~~ers~~--~~~d~ELk~~L~~ky~~~l~~l~~e~~kkrKkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La 295 (335)
++....+.+.+.+ .+.+..++..+.+.+..+++....+..++|+++.||++++.+|+.||++|+.||||++.+|..|+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~lP~~a~~ilr~Wl~~h~~~PYPse~~K~~La 276 (342)
T KOG0773|consen 197 SEQDDSEDESGPSGSEPPLRLAKQSLRQQRSAYDGSGGKKQSKWRPQRGLPKEAVSILRAWLFEHLLHPYPSDDEKLMLA 276 (342)
T ss_pred ccccccccccCcccccCCcccccccccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhccCCCCcchhccccc
Confidence 1111111111111 23456777788888877777777778888999999999999999999999999999999999999
Q ss_pred HHhCcccccccccccccccccccccccccC
Q 019840 296 AISLFNSICTLNSYLVLNVVAGGRQGKIGA 325 (335)
Q Consensus 296 ~~TgLt~~~~L~~~QV~NWF~NaRrR~~~~ 325 (335)
.+|||++ .||+|||||+|+|.+.-
T Consensus 277 ~~TGLs~------~Qv~NWFINaR~R~w~p 300 (342)
T KOG0773|consen 277 KQTGLSR------PQVSNWFINARVRLWKP 300 (342)
T ss_pred hhcCCCc------ccCCchhhhcccccCCc
Confidence 9999885 59999999999999853
No 2
>PF03791 KNOX2: KNOX2 domain ; InterPro: IPR005541 The MEINOX region is comprised of two domains, KNOX1 and KNOX2. KNOX1 plays a role in suppressing target gene expression. KNOX2, essential for function, is thought to be necessary for homo-dimerization [].; GO: 0003677 DNA binding, 0005634 nucleus
Probab=99.91 E-value=9.1e-25 Score=161.80 Aligned_cols=50 Identities=46% Similarity=0.682 Sum_probs=47.7
Q ss_pred CCcCCChhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhhC
Q 019840 126 GRVLDDKELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTG 179 (335)
Q Consensus 126 ~~~~~DPELDqFMeaYc~~L~kykeEL~kP~~~~~~EA~~F~~~iE~QL~~L~~ 179 (335)
.++++|||||||||+||.||+||||||+||| .||++|||+||+||++|||
T Consensus 3 ~~~~~dpELDqFMeaYc~~L~kykeeL~~p~----~EA~~f~~~ie~qL~~Lt~ 52 (52)
T PF03791_consen 3 SSIGADPELDQFMEAYCDMLVKYKEELQRPF----QEAMEFCREIEQQLSSLTG 52 (52)
T ss_pred CCCCCCccHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhC
Confidence 4689999999999999999999999999998 5999999999999999995
No 3
>KOG0774 consensus Transcription factor PBX and related HOX domain proteins [Transcription]
Probab=99.90 E-value=3.6e-23 Score=195.63 Aligned_cols=206 Identities=19% Similarity=0.264 Sum_probs=142.6
Q ss_pred hhHHHHHHHhcCCChHHHHHHHHhc-hhcc---------CCCC-chhhHHHHHhhhhhHHhhhhhcc---CCCcCCChhH
Q 019840 69 ETVKCKAEIVGHPLYEQLLSAHVSC-LRIA---------TPVD-QLPKIDAQLSRSRDVLAKYSAVA---NGRVLDDKEL 134 (335)
Q Consensus 69 e~~~iKAkI~sHPlYp~LL~AyidC-~KVG---------APpe-vv~rld~~l~~~~~~~~k~~~~~---~~~~~~DPEL 134 (335)
+..+.|-.|-+||+||.|.+-.++. .|++ .||| ++-|||-+|-. +.|+-....| ....|.| -
T Consensus 27 eaqa~K~~lnch~mk~AlfsVLcE~KeKt~lsir~~qdeep~dpqlmRLDnML~A--EGVagPekgga~~~~Asgg~--h 102 (334)
T KOG0774|consen 27 EAQARKHALNCHRMKPALFSVLCEIKEKTVLSIRGMQDEEPPDPQLMRLDNMLLA--EGVAGPEKGGARAAAASGGD--H 102 (334)
T ss_pred hHHhhhhccccccchHHHHHHHHHhhhhheeeeccccccCCCChHHHHHHHHHHH--hcccCccccchhhhhccCCC--h
Confidence 4458899999999999999877665 3443 4888 88899988742 1222211111 1112233 0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCCCCchhhccCCCCCccCCCCCCCCC
Q 019840 135 DQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSPGESTGATMSDDDEDQVDSDTNFFDGSLDGPDS 214 (335)
Q Consensus 135 DqFMeaYc~~L~kykeEL~kP~~~~~~EA~~F~~~iE~QL~~L~~~s~~e~t~~~~Sdde~~~~~s~~~~~~g~~~~~d~ 214 (335)
-.+-..-.++=..|.+||.+== .-+..||-.++ +|.. +| |
T Consensus 103 sdYR~kL~qiR~iy~~Elekye----qaCneftthV~----nlL~----------------eQ--s-------------- 142 (334)
T KOG0774|consen 103 SDYRAKLLQIRQIYHNELEKYE----QACNEFTTHVM----NLLR----------------EQ--S-------------- 142 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH----HHHH----------------Hh--c--------------
Confidence 1111122333345666665421 12344444444 4432 11 1
Q ss_pred CCCCCCCCCchhh--hhHHHhhHHHHHHHHhhhhhhhhhHHHHHHh-hccCCCCcchHHHHHHHHHHhccCCCCCCHHHH
Q 019840 215 MGFGPLVPTESER--SLMERVRHELKHELKQGYKEKIVDIREEILR-KRRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRT 291 (335)
Q Consensus 215 ~~~g~~~p~~~er--s~~~~~d~ELk~~L~~ky~~~l~~l~~e~~k-krKkgkLPKea~~iLk~W~~~H~~~PYPSE~EK 291 (335)
.+-||.|++.++ ..|.+--.-++.+|++..+..+..||.+|.. +|||++|+|.+++||.+||+.|+.+|||||++|
T Consensus 143 -r~RPi~~ke~e~m~~~i~~kF~~iq~~lkqstce~vmiLr~r~ldarRKRRNFsK~aTeiLneyF~~h~~nPYPSee~K 221 (334)
T KOG0774|consen 143 -RTRPIMPKEIERMVQIISKKFSHIQMQLKQSTCEAVMILRSRFLDARRKRRNFSKQATEILNEYFYSHLSNPYPSEEAK 221 (334)
T ss_pred -ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHhcCCCCCcHHHH
Confidence 134677777764 5566667789999999999999999999986 578899999999999999999999999999999
Q ss_pred HHHHHHhCcccccccccccccccccccccccccC
Q 019840 292 NSCIAISLFNSICTLNSYLVLNVVAGGRQGKIGA 325 (335)
Q Consensus 292 ~~La~~TgLt~~~~L~~~QV~NWF~NaRrR~~~~ 325 (335)
++||.+ |+|+++||+|||.|+|.|.+..
T Consensus 222 ~eLAkq------CnItvsQvsnwfgnkrIrykK~ 249 (334)
T KOG0774|consen 222 EELAKQ------CNITVSQVSNWFGNKRIRYKKN 249 (334)
T ss_pred HHHHHH------cCceehhhccccccceeehhhh
Confidence 999966 6677899999999999887654
No 4
>PF03790 KNOX1: KNOX1 domain ; InterPro: IPR005540 The MEINOX region is comprised of two domains, KNOX1 and KNOX2. KNOX1 plays a role in suppressing target gene expression. KNOX2, essential for function, is thought to be necessary for homo-dimerization [].; GO: 0003677 DNA binding, 0005634 nucleus
Probab=99.84 E-value=5.3e-22 Score=143.06 Aligned_cols=43 Identities=35% Similarity=0.691 Sum_probs=40.3
Q ss_pred HHHHHHHhcCCChHHHHHHHHhchhccCCCCchhhHHHHHhhh
Q 019840 71 VKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRS 113 (335)
Q Consensus 71 ~~iKAkI~sHPlYp~LL~AyidC~KVGAPpevv~rld~~l~~~ 113 (335)
+.|||+|++||+||+||+|||+|+|||||||++++||++++++
T Consensus 1 e~iKA~I~~HP~Y~~Ll~Ayi~C~KVGAP~e~~~~L~e~~~~~ 43 (45)
T PF03790_consen 1 EAIKAKIASHPLYPRLLAAYIDCQKVGAPPEVVARLDEILAES 43 (45)
T ss_pred ChHHHHHHcCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 4799999999999999999999999999999999999987654
No 5
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3K2A_B 2LK2_A 1X2N_A 2DMN_A.
Probab=99.69 E-value=5e-18 Score=119.43 Aligned_cols=40 Identities=20% Similarity=0.361 Sum_probs=35.2
Q ss_pred HHHhccCCCCCCHHHHHHHHHHhCcccccccccccccccccccccc
Q 019840 276 WWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQG 321 (335)
Q Consensus 276 W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRrR 321 (335)
||.+|+.|||||++||.+|+.+|||+. +||+|||+|+|+|
T Consensus 1 Wl~~h~~nPYPs~~ek~~L~~~tgls~------~Qi~~WF~NaRrR 40 (40)
T PF05920_consen 1 WLLEHLHNPYPSKEEKEELAKQTGLSR------KQISNWFINARRR 40 (40)
T ss_dssp HHHHTTTSGS--HHHHHHHHHHHTS-H------HHHHHHHHHHHHH
T ss_pred CHHHHCCCCCCCHHHHHHHHHHcCCCH------HHHHHHHHHhHcc
Confidence 999999999999999999999999874 6999999999987
No 6
>KOG0775 consensus Transcription factor SIX and related HOX domain proteins [Transcription]
Probab=99.36 E-value=3.4e-13 Score=128.76 Aligned_cols=58 Identities=29% Similarity=0.421 Sum_probs=50.7
Q ss_pred hhccCCCCcc--------------hHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCcccccccccccccccccccccccc
Q 019840 258 RKRRAGKLPG--------------DTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQGKI 323 (335)
Q Consensus 258 kkrKkgkLPK--------------ea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRrR~~ 323 (335)
|-|||-.||+ .+|.+||+||. .+||||.+||.+||+.|||+. +||+|||+|.|+|..
T Consensus 162 RvRrKfPlPrTIWDGEet~yCFKekSR~~LrewY~---~~~YPsp~eKReLA~aTgLt~------tQVsNWFKNRRQRDR 232 (304)
T KOG0775|consen 162 RVRRKFPLPRTIWDGEETVYCFKEKSRSLLREWYL---QNPYPSPREKRELAEATGLTI------TQVSNWFKNRRQRDR 232 (304)
T ss_pred eeeccCCCCCccccCceeeeehhHhhHHHHHHHHh---cCCCCChHHHHHHHHHhCCch------hhhhhhhhhhhhhhh
Confidence 4567777887 58999999999 469999999999999999885 599999999999887
Q ss_pred c
Q 019840 324 G 324 (335)
Q Consensus 324 ~ 324 (335)
.
T Consensus 233 a 233 (304)
T KOG0775|consen 233 A 233 (304)
T ss_pred h
Confidence 3
No 7
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=99.24 E-value=5e-12 Score=91.34 Aligned_cols=56 Identities=13% Similarity=0.086 Sum_probs=50.1
Q ss_pred hccCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCcccccccccccccccccccccccc
Q 019840 259 KRRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQGKI 323 (335)
Q Consensus 259 krKkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRrR~~ 323 (335)
++++..++++...+|..||.. +|||+.+++..||.+|||+ ..||.|||.|.|.+..
T Consensus 1 ~~~r~~~~~~~~~~Le~~f~~---~~~P~~~~~~~la~~~~l~------~~qV~~WF~nrR~~~~ 56 (59)
T cd00086 1 RRKRTRFTPEQLEELEKEFEK---NPYPSREEREELAKELGLT------ERQVKIWFQNRRAKLK 56 (59)
T ss_pred CCCCCcCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHHCcC------HHHHHHHHHHHHHHHh
Confidence 356789999999999999998 6999999999999999877 5799999999997654
No 8
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=99.21 E-value=9.6e-12 Score=89.58 Aligned_cols=54 Identities=15% Similarity=0.124 Sum_probs=48.4
Q ss_pred ccCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCccccccccccccccccccccccc
Q 019840 260 RRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQGK 322 (335)
Q Consensus 260 rKkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRrR~ 322 (335)
+.+..++++...+|..||..| |||+.+++..|+.++||+ ..||.|||.|.|++.
T Consensus 2 k~r~~~~~~~~~~L~~~f~~~---~~P~~~~~~~la~~~~l~------~~qV~~WF~nrR~~~ 55 (56)
T smart00389 2 RKRTSFTPEQLEELEKEFQKN---PYPSREEREELAAKLGLS------ERQVKVWFQNRRAKW 55 (56)
T ss_pred CCCCcCCHHHHHHHHHHHHhC---CCCCHHHHHHHHHHHCcC------HHHHHHhHHHHhhcc
Confidence 566789999999999999966 899999999999999877 469999999999764
No 9
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=98.96 E-value=3e-10 Score=82.67 Aligned_cols=55 Identities=16% Similarity=0.266 Sum_probs=49.4
Q ss_pred hccCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCccccccccccccccccccccccc
Q 019840 259 KRRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQGK 322 (335)
Q Consensus 259 krKkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRrR~ 322 (335)
||+|.+|+.+...+|..+|.. +|||+.++...||.++||+ ..||.|||.|.|++.
T Consensus 1 kr~r~~~t~~q~~~L~~~f~~---~~~p~~~~~~~la~~l~l~------~~~V~~WF~nrR~k~ 55 (57)
T PF00046_consen 1 KRKRTRFTKEQLKVLEEYFQE---NPYPSKEEREELAKELGLT------ERQVKNWFQNRRRKE 55 (57)
T ss_dssp SSSSSSSSHHHHHHHHHHHHH---SSSCHHHHHHHHHHHHTSS------HHHHHHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHH---hcccccccccccccccccc------ccccccCHHHhHHHh
Confidence 467889999999999999996 5999999999999998877 579999999999653
No 10
>PF03789 ELK: ELK domain ; InterPro: IPR005539 This domain is required for the nuclear localisation of these proteins []. All of these proteins are members of the Tale/Knox homeodomain family, a subfamily, containing homeobox IPR001356 from INTERPRO.; GO: 0003677 DNA binding, 0005634 nucleus
Probab=98.08 E-value=1.7e-06 Score=54.36 Aligned_cols=22 Identities=41% Similarity=0.622 Sum_probs=20.9
Q ss_pred HHHHHHHhhhhhhhhhHHHHHH
Q 019840 236 ELKHELKQGYKEKIVDIREEIL 257 (335)
Q Consensus 236 ELk~~L~~ky~~~l~~l~~e~~ 257 (335)
|||++|+|||++||++||+||+
T Consensus 1 ELK~~LlrkY~g~i~~Lr~Ef~ 22 (22)
T PF03789_consen 1 ELKHQLLRKYSGYISSLRQEFS 22 (22)
T ss_pred CHHHHHHHHHhHhHHHHHHHhC
Confidence 6999999999999999999995
No 11
>KOG0773 consensus Transcription factor MEIS1 and related HOX domain proteins [Transcription]
Probab=97.94 E-value=1.7e-06 Score=83.76 Aligned_cols=60 Identities=23% Similarity=0.288 Sum_probs=53.5
Q ss_pred hhccCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCccccccccccccccccccccccccc
Q 019840 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQGKIG 324 (335)
Q Consensus 258 kkrKkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRrR~~~ 324 (335)
..++++++++++ .+|+.|+..|...|||++-+|..|+..|+++ +.|+++||+|+|||...
T Consensus 95 ~~~~~~n~~~~s-~~~~~~~~~~~~~~~~~k~~~~ll~~~~~~~------~~~~~~~~~~a~r~~~~ 154 (342)
T KOG0773|consen 95 KGARRGNATRES-ATLKAWLEEHRLNPYPSKLEKILLAVITKLT------LTQVSTWFANARRRLKK 154 (342)
T ss_pred cccccccccccc-cccccchhhhhhccCchHHHHHHHHHHHHhh------hhhHHHHHHHHHHHHHh
Confidence 456788999999 9999999999999999999999999999877 46999999999977543
No 12
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=97.65 E-value=7.6e-05 Score=56.83 Aligned_cols=53 Identities=8% Similarity=0.056 Sum_probs=47.4
Q ss_pred hhccCCCCcchHHHHHHHHHHhccCCCC----CCHHHHHHHHHHhCcccccccccccccccccccc
Q 019840 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPY----PTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGR 319 (335)
Q Consensus 258 kkrKkgkLPKea~~iLk~W~~~H~~~PY----PSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaR 319 (335)
|||+|.+|+.+....|..-|... +| |+..+..+||..+||+. .+|..||-|.+
T Consensus 1 ~kR~RT~Ft~~Q~~~Le~~fe~~---~y~~~~~~~~~r~~la~~lgl~~------~vvKVWfqN~k 57 (58)
T TIGR01565 1 KKRRRTKFTAEQKEKMRDFAEKL---GWKLKDKRREEVREFCEEIGVTR------KVFKVWMHNNK 57 (58)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHc---CCCCCCCCHHHHHHHHHHhCCCH------HHeeeecccCC
Confidence 47889999999999999988854 89 99999999999999885 59999999975
No 13
>PF03792 PBC: PBC domain; InterPro: IPR005542 Pbx proteins are members of the TALE (three-amino-acid loop extension) family of atypical homeodomain proteins, whose members are characterised by a three-residue insertion in the first helix of the homeodomain involved in their interaction with Hox proteins. Examination of Pbx1 has shown that, in addition to the homeodomain, a short 16-residue C-terminal tail is essential for maximal cooperative interactions with Hox partners as well as for maximal monomeric binding of Pbx1 to DNA. The PBX domain is a bipartite acidic domain [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=96.82 E-value=0.018 Score=53.44 Aligned_cols=144 Identities=22% Similarity=0.278 Sum_probs=83.9
Q ss_pred hhHHHHHHHhcCCChHHHHHHHHhch-hccC---------CCC-chhhHHHHHhhhhhHHhhhhhccC--CC---cCCCh
Q 019840 69 ETVKCKAEIVGHPLYEQLLSAHVSCL-RIAT---------PVD-QLPKIDAQLSRSRDVLAKYSAVAN--GR---VLDDK 132 (335)
Q Consensus 69 e~~~iKAkI~sHPlYp~LL~AyidC~-KVGA---------Ppe-vv~rld~~l~~~~~~~~k~~~~~~--~~---~~~DP 132 (335)
+....|-.|-+||+||.|-+..++-. |++. ||| ++.|||-+|... .+......+. .. .+.|-
T Consensus 25 eaqa~K~~l~~hr~k~ALfsVLcE~KEkt~LSir~~qee~p~dpQl~RLDNML~AE--GV~gPe~~~~~~~~~~~~~~~~ 102 (191)
T PF03792_consen 25 EAQARKHALNCHRMKPALFSVLCEIKEKTVLSIRNIQEEDPPDPQLMRLDNMLLAE--GVAGPEKGGRAAAAAAGTAADN 102 (191)
T ss_pred HHHHhchhhcCCCCchhhHHHHHHHHhhcCccccccCCcCCCchhhhhhhcchhhh--cCcCCCCcccchhhhhccCccc
Confidence 55789999999999999999987764 4431 444 668888887521 1111111111 01 11222
Q ss_pred hHHHHHHHHHHHH----HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCCCCchhhccCCCCCccCCC
Q 019840 133 ELDQFMTHYVLLL----YSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSPGESTGATMSDDDEDQVDSDTNFFDGS 208 (335)
Q Consensus 133 ELDqFMeaYc~~L----~kykeEL~kP~~~~~~EA~~F~~~iE~QL~~L~~~s~~e~t~~~~Sdde~~~~~s~~~~~~g~ 208 (335)
.+|+ ..|-.-| ..|..||.+-- .-+..|+..+.+=|.. |
T Consensus 103 ~~d~--~dYr~kL~~ir~~y~~el~kye----~ac~eF~~hV~~lLre--------------------Q----------- 145 (191)
T PF03792_consen 103 SIDH--SDYRAKLSQIRQIYHSELEKYE----QACNEFTEHVMNLLRE--------------------Q----------- 145 (191)
T ss_pred ccch--HHHHHHHHHHHHHHHHHHHHHH----HHhhhhHHHHHHHHHH--------------------h-----------
Confidence 2322 1233333 34555555432 2344555555433331 1
Q ss_pred CCCCCCCCCCCCCCCchhh--hhHHHhhHHHHHHHHhhhhhhhhhHHHHHH
Q 019840 209 LDGPDSMGFGPLVPTESER--SLMERVRHELKHELKQGYKEKIVDIREEIL 257 (335)
Q Consensus 209 ~~~~d~~~~g~~~p~~~er--s~~~~~d~ELk~~L~~ky~~~l~~l~~e~~ 257 (335)
..|-||.|.++|+ +.+++--.-+..+|++..+..+..||..|.
T Consensus 146 ------s~~RPIs~keiE~m~~~i~~Kf~~iq~qLKQstCEaVm~LRsRfl 190 (191)
T PF03792_consen 146 ------SEFRPISPKEIERMVNIIHRKFSKIQMQLKQSTCEAVMILRSRFL 190 (191)
T ss_pred ------cccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1255777888875 555666678899999999999999987774
No 14
>KOG2252 consensus CCAAT displacement protein and related homeoproteins [Transcription]
Probab=96.70 E-value=0.0011 Score=69.10 Aligned_cols=56 Identities=13% Similarity=0.097 Sum_probs=46.8
Q ss_pred hccCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCcccccccccccccccccccccccc
Q 019840 259 KRRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQGKI 323 (335)
Q Consensus 259 krKkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRrR~~ 323 (335)
||-|-.|...-++.|+.-|.+. |||+.+.-+.|+.+-||. ++=|.|||.|+|||.+
T Consensus 421 KKPRlVfTd~QkrTL~aiFke~---~RPS~Emq~tIS~qL~L~------~sTV~NfFmNaRRRsl 476 (558)
T KOG2252|consen 421 KKPRLVFTDIQKRTLQAIFKEN---KRPSREMQETISQQLNLE------LSTVINFFMNARRRSL 476 (558)
T ss_pred CCceeeecHHHHHHHHHHHhcC---CCCCHHHHHHHHHHhCCc------HHHHHHHHHhhhhhcc
Confidence 3445567777889999988875 999999999999998776 5689999999999963
No 15
>COG5576 Homeodomain-containing transcription factor [Transcription]
Probab=96.34 E-value=0.0021 Score=57.50 Aligned_cols=58 Identities=12% Similarity=0.058 Sum_probs=47.3
Q ss_pred hccCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCcccccccccccccccccccccccccC
Q 019840 259 KRRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQGKIGA 325 (335)
Q Consensus 259 krKkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRrR~~~~ 325 (335)
+++|.++......+|..=|.. .|||+-.++..|+...| |+..=|.-||-|.|.+....
T Consensus 52 ~~~r~R~t~~Q~~vL~~~F~i---~p~Ps~~~r~~L~~~ln------m~~ksVqIWFQNkR~~~k~~ 109 (156)
T COG5576 52 KSKRRRTTDEQLMVLEREFEI---NPYPSSITRIKLSLLLN------MPPKSVQIWFQNKRAKEKKK 109 (156)
T ss_pred cccceechHHHHHHHHHHhcc---CCCCCHHHHHHHHHhcC------CChhhhhhhhchHHHHHHHh
Confidence 566778888899999988885 59999999999997654 55788999999999654443
No 16
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A.
Probab=95.80 E-value=0.0037 Score=47.63 Aligned_cols=42 Identities=17% Similarity=0.080 Sum_probs=29.9
Q ss_pred HHHHHHHHHhccCCCCCCHHHHHHHHHHhCccccccccccccccccccccc
Q 019840 270 TSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQ 320 (335)
Q Consensus 270 ~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRr 320 (335)
.+.|.+.|..| .+..|.+-..|+..|||+ -.||.+||+-.+.
T Consensus 10 ~~pL~~Yy~~h---~~L~E~DL~~L~~kS~ms------~qqVr~WFa~~~~ 51 (56)
T PF11569_consen 10 IQPLEDYYLKH---KQLQEEDLDELCDKSRMS------YQQVRDWFAERMQ 51 (56)
T ss_dssp -HHHHHHHHHT-------TTHHHHHHHHTT--------HHHHHHHHHHHS-
T ss_pred hHHHHHHHHHc---CCccHhhHHHHHHHHCCC------HHHHHHHHHHhcc
Confidence 34499999977 899999999999999877 4699999987754
No 17
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=95.31 E-value=0.012 Score=54.80 Aligned_cols=56 Identities=13% Similarity=0.020 Sum_probs=46.5
Q ss_pred hhccCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCccccccccccccccccccccccc
Q 019840 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQGK 322 (335)
Q Consensus 258 kkrKkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRrR~ 322 (335)
.++||.+|..+.+..|-.=|..| =|=..++|..||++-||+. -||--||-|.|-|-
T Consensus 50 ~~~kk~Rlt~eQ~~~LE~~F~~~---~~L~p~~K~~LAk~LgL~p------RQVavWFQNRRARw 105 (198)
T KOG0483|consen 50 GKGKKRRLTSEQVKFLEKSFESE---KKLEPERKKKLAKELGLQP------RQVAVWFQNRRARW 105 (198)
T ss_pred cccccccccHHHHHHhHHhhccc---cccChHHHHHHHHhhCCCh------hHHHHHHhhccccc
Confidence 35677889999999999888876 4556678999999988874 69999999999653
No 18
>KOG0493 consensus Transcription factor Engrailed, contains HOX domain [General function prediction only]
Probab=95.24 E-value=0.015 Score=56.66 Aligned_cols=55 Identities=18% Similarity=0.083 Sum_probs=45.4
Q ss_pred hccCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCccccccccccccccccccccccc
Q 019840 259 KRRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQGK 322 (335)
Q Consensus 259 krKkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRrR~ 322 (335)
||-|.-|.-+..+.||.=|.++ -|=||.-++.|+++.||+ -.||..||.|+|-++
T Consensus 247 KRPRTAFtaeQL~RLK~EF~en---RYlTEqRRQ~La~ELgLN------EsQIKIWFQNKRAKi 301 (342)
T KOG0493|consen 247 KRPRTAFTAEQLQRLKAEFQEN---RYLTEQRRQELAQELGLN------ESQIKIWFQNKRAKI 301 (342)
T ss_pred cCccccccHHHHHHHHHHHhhh---hhHHHHHHHHHHHHhCcC------HHHhhHHhhhhhhhh
Confidence 3445668888889999888876 799999999999997665 689999999999443
No 19
>KOG3802 consensus Transcription factor OCT-1, contains POU and HOX domains [Transcription]
Probab=94.95 E-value=0.029 Score=56.97 Aligned_cols=57 Identities=16% Similarity=0.189 Sum_probs=46.9
Q ss_pred HhhccCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCccccccccccccccccccccccc
Q 019840 257 LRKRRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQGK 322 (335)
Q Consensus 257 ~kkrKkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRrR~ 322 (335)
.|+|||..+...++..|..-|. ++|-||-+|-..||++-+|.+ .=|.-||=|+|.+.
T Consensus 293 RkRKKRTSie~~vr~aLE~~F~---~npKPt~qEIt~iA~~L~leK------EVVRVWFCNRRQke 349 (398)
T KOG3802|consen 293 RKRKKRTSIEVNVRGALEKHFL---KNPKPTSQEITHIAESLQLEK------EVVRVWFCNRRQKE 349 (398)
T ss_pred cccccccceeHHHHHHHHHHHH---hCCCCCHHHHHHHHHHhcccc------ceEEEEeecccccc
Confidence 4566677788888999977776 469999999999999988875 57899999999543
No 20
>KOG0842 consensus Transcription factor tinman/NKX2-3, contains HOX domain [Transcription]
Probab=94.86 E-value=0.025 Score=55.79 Aligned_cols=53 Identities=9% Similarity=0.056 Sum_probs=43.8
Q ss_pred hhccCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCcccccccccccccccccccc
Q 019840 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGR 319 (335)
Q Consensus 258 kkrKkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaR 319 (335)
|||+|--|++.-+--|..=|.+. =|=|--|++.||..-+|| -+||..||-|.|
T Consensus 153 kRKrRVLFSqAQV~ELERRFrqQ---RYLSAPERE~LA~~LrLT------~TQVKIWFQNrR 205 (307)
T KOG0842|consen 153 KRKRRVLFSQAQVYELERRFRQQ---RYLSAPEREHLASSLRLT------PTQVKIWFQNRR 205 (307)
T ss_pred ccccccccchhHHHHHHHHHHhh---hccccHhHHHHHHhcCCC------chheeeeeecch
Confidence 45556678998888888877765 688999999999887666 579999999999
No 21
>KOG0485 consensus Transcription factor NKX-5.1/HMX1, contains HOX domain [Transcription]
Probab=94.02 E-value=0.032 Score=53.20 Aligned_cols=53 Identities=11% Similarity=0.028 Sum_probs=45.3
Q ss_pred hhccCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCcccccccccccccccccccc
Q 019840 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGR 319 (335)
Q Consensus 258 kkrKkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaR 319 (335)
|||.|.-|++..+..|..-|... -|=|..|+..||++..|| -+||..||.|.|
T Consensus 104 KKktRTvFSraQV~qLEs~Fe~k---rYLSsaeRa~LA~sLqLT------ETQVKIWFQNRR 156 (268)
T KOG0485|consen 104 KKKTRTVFSRAQVFQLESTFELK---RYLSSAERAGLAASLQLT------ETQVKIWFQNRR 156 (268)
T ss_pred cccchhhhhHHHHHHHHHHHHHH---hhhhHHHHhHHHHhhhhh------hhhhhhhhhhhh
Confidence 56778889999999998888866 688999999999886655 579999999999
No 22
>KOG0843 consensus Transcription factor EMX1 and related HOX domain proteins [Transcription]
Probab=93.82 E-value=0.048 Score=50.54 Aligned_cols=53 Identities=11% Similarity=-0.023 Sum_probs=44.9
Q ss_pred hccCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCccccccccccccccccccccc
Q 019840 259 KRRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQ 320 (335)
Q Consensus 259 krKkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRr 320 (335)
||.|.-|+.+....|..-|.. +-|=.-.|++.||+..+|+ -+||.-||-|.|.
T Consensus 103 kr~RT~ft~~Ql~~LE~~F~~---~~Yvvg~eR~~LA~~L~Ls------etQVkvWFQNRRt 155 (197)
T KOG0843|consen 103 KRIRTAFTPEQLLKLEHAFEG---NQYVVGAERKQLAQSLSLS------ETQVKVWFQNRRT 155 (197)
T ss_pred CccccccCHHHHHHHHHHHhc---CCeeechHHHHHHHHcCCC------hhHhhhhhhhhhH
Confidence 566778999988999888875 4788999999999987766 5799999999993
No 23
>KOG0486 consensus Transcription factor PTX1, contains HOX domain [Transcription]
Probab=93.57 E-value=0.049 Score=54.13 Aligned_cols=51 Identities=16% Similarity=0.128 Sum_probs=44.5
Q ss_pred ccCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCcccccccccccccccccccc
Q 019840 260 RRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGR 319 (335)
Q Consensus 260 rKkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaR 319 (335)
|.|..|.....+-|+.||.. +=||+-+..+++|--|+||- ..|.+||+|.|
T Consensus 114 rQrthFtSqqlqele~tF~r---NrypdMstrEEIavwtNlTE------~rvrvwfknrr 164 (351)
T KOG0486|consen 114 RQRTHFTSQQLQELEATFQR---NRYPDMSTREEIAVWTNLTE------ARVRVWFKNRR 164 (351)
T ss_pred hhhhhhHHHHHHHHHHHHhh---ccCCccchhhHHHhhccccc------hhhhhhcccch
Confidence 34567888888999999997 58999999999999998875 69999999998
No 24
>KOG0487 consensus Transcription factor Abd-B, contains HOX domain [Transcription]
Probab=92.91 E-value=0.075 Score=52.57 Aligned_cols=54 Identities=13% Similarity=0.019 Sum_probs=41.7
Q ss_pred hccCCCCcchHHHHH-HHHHHhccCCCCCCHHHHHHHHHHhCccccccccccccccccccccccc
Q 019840 259 KRRAGKLPGDTTSLL-KAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQGK 322 (335)
Q Consensus 259 krKkgkLPKea~~iL-k~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRrR~ 322 (335)
+|||-..+|.-+.-| |+.++ +=|=|.+-+.+|+..++||- .||..||-|.|.+.
T Consensus 236 RKKRcPYTK~QtlELEkEFlf----N~YitkeKR~ElSr~lNLTe------RQVKIWFQNRRMK~ 290 (308)
T KOG0487|consen 236 RKKRCPYTKHQTLELEKEFLF----NMYITKEKRLELSRTLNLTE------RQVKIWFQNRRMKE 290 (308)
T ss_pred ccccCCchHHHHHHHHHHHHH----HHHHhHHHHHHHHHhcccch------hheeeeehhhhhHH
Confidence 456677889765444 55555 47889999999999988874 69999999999543
No 25
>KOG0492 consensus Transcription factor MSH, contains HOX domain [General function prediction only]
Probab=92.45 E-value=0.09 Score=49.88 Aligned_cols=54 Identities=13% Similarity=0.104 Sum_probs=36.9
Q ss_pred hhccCCCCcc-----hHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCccccccccccccccccccccc
Q 019840 258 RKRRAGKLPG-----DTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQ 320 (335)
Q Consensus 258 kkrKkgkLPK-----ea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRr 320 (335)
+|.|-++.|+ .....|..=|.+ --|=|.+|..+++..-.|| -+||..||.|.|-
T Consensus 139 rKhk~nRkPRtPFTtqQLlaLErkfre---kqYLSiaEraefSsSL~LT------eTqVKIWFQNRRA 197 (246)
T KOG0492|consen 139 RKHKPNRKPRTPFTTQQLLALERKFRE---KQYLSIAERAEFSSSLELT------ETQVKIWFQNRRA 197 (246)
T ss_pred cccCCCCCCCCCCCHHHHHHHHHHHhH---hhhhhHHHHHhhhhhhhhh------hhheehhhhhhhH
Confidence 3444444444 333344444444 4899999999999776555 5799999999993
No 26
>KOG0850 consensus Transcription factor DLX and related proteins with LIM Zn-binding and HOX domains [Transcription]
Probab=92.23 E-value=0.11 Score=49.69 Aligned_cols=49 Identities=10% Similarity=-0.058 Sum_probs=37.2
Q ss_pred CCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCcccccccccccccccccccc
Q 019840 262 AGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGR 319 (335)
Q Consensus 262 kgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaR 319 (335)
|..++.--.+.|..=|.. .-|=---|+.+||..-||| .+||..||-|+|
T Consensus 126 RTIYSS~QLqaL~rRFQk---TQYLALPERAeLAAsLGLT------QTQVKIWFQNrR 174 (245)
T KOG0850|consen 126 RTIYSSLQLQALNRRFQQ---TQYLALPERAELAASLGLT------QTQVKIWFQNRR 174 (245)
T ss_pred cccccHHHHHHHHHHHhh---cchhcCcHHHHHHHHhCCc------hhHhhhhhhhhH
Confidence 445666666777766663 4555566999999998877 569999999999
No 27
>KOG2251 consensus Homeobox transcription factor [Transcription]
Probab=92.21 E-value=0.17 Score=48.18 Aligned_cols=51 Identities=16% Similarity=0.094 Sum_probs=43.2
Q ss_pred ccCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCcccccccccccccccccccc
Q 019840 260 RRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGR 319 (335)
Q Consensus 260 rKkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaR 319 (335)
|-|..|...-..+|..=|.+ .-||.-.-.++||.+-+|. ..+|.+||+|.|
T Consensus 39 RERTtFtr~QlevLe~LF~k---TqYPDv~~rEelAlklnLp------eSrVqVWFKNRR 89 (228)
T KOG2251|consen 39 RERTTFTRKQLEVLEALFAK---TQYPDVFMREELALKLNLP------ESRVQVWFKNRR 89 (228)
T ss_pred cccceecHHHHHHHHHHHHh---hcCccHHHHHHHHHHhCCc------hhhhhhhhcccc
Confidence 34667888889999877775 5899999999999887765 579999999999
No 28
>KOG0488 consensus Transcription factor BarH and related HOX domain proteins [General function prediction only]
Probab=90.68 E-value=0.2 Score=49.30 Aligned_cols=49 Identities=12% Similarity=-0.016 Sum_probs=37.9
Q ss_pred CCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCcccccccccccccccccccc
Q 019840 262 AGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGR 319 (335)
Q Consensus 262 kgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaR 319 (335)
|.-|+..-..-|..=|.. =-|=|..|+..||..-|||- .||..||-|.|
T Consensus 176 RTaFT~~Ql~~LEkrF~~---QKYLS~~DR~~LA~~LgLTd------aQVKtWfQNRR 224 (309)
T KOG0488|consen 176 RTAFSDHQLFELEKRFEK---QKYLSVADRIELAASLGLTD------AQVKTWFQNRR 224 (309)
T ss_pred hhhhhHHHHHHHHHHHHH---hhcccHHHHHHHHHHcCCch------hhHHHHHhhhh
Confidence 445777666666655553 36889999999999988774 69999999977
No 29
>KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only]
Probab=90.03 E-value=0.21 Score=44.80 Aligned_cols=56 Identities=9% Similarity=-0.003 Sum_probs=45.5
Q ss_pred HHhhccCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCccccccccccccccccccccc
Q 019840 256 ILRKRRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQ 320 (335)
Q Consensus 256 ~~kkrKkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRr 320 (335)
+.+++.|-.|.....+.|..=|... +||.-.-++.|+..++|+ -..|..||-|.|.
T Consensus 58 ~~~rr~rt~~~~~ql~~ler~f~~~---h~Pd~~~r~~la~~~~~~------e~rVqvwFqnrra 113 (235)
T KOG0490|consen 58 FSKRCARCKFTISQLDELERAFEKV---HLPCFACRECLALLLTGD------EFRVQVWFQNRRA 113 (235)
T ss_pred ccccccCCCCCcCHHHHHHHhhcCC---CcCccchHHHHhhcCCCC------eeeeehhhhhhcH
Confidence 3445667778888889988777654 999999999999887766 4699999999994
No 30
>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription]
Probab=87.59 E-value=0.29 Score=48.52 Aligned_cols=78 Identities=13% Similarity=0.079 Sum_probs=57.6
Q ss_pred hhhHHHhhHHHHHHHHhhhhhhhhhHHHHHHhhccCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCccccccc
Q 019840 227 RSLMERVRHELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTL 306 (335)
Q Consensus 227 rs~~~~~d~ELk~~L~~ky~~~l~~l~~e~~kkrKkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L 306 (335)
+.+++..|=|-..+ |- ...|..+-..||-|..++-...+.||.-+.. -|-|-.-=+++|+..|||..
T Consensus 142 ~rLvCK~DYE~Ak~---k~---~~~l~gd~~nKRPRTTItAKqLETLK~AYn~---SpKPARHVREQLsseTGLDM---- 208 (383)
T KOG4577|consen 142 ARLVCKDDYETAKQ---KH---CNELEGDASNKRPRTTITAKQLETLKQAYNT---SPKPARHVREQLSSETGLDM---- 208 (383)
T ss_pred ceeehhhhHHHHHh---cc---ccccccccccCCCcceeeHHHHHHHHHHhcC---CCchhHHHHHHhhhccCcce----
Confidence 34555555554332 22 2355667778888888888888999988874 59999999999999999984
Q ss_pred ccccccccccccc
Q 019840 307 NSYLVLNVVAGGR 319 (335)
Q Consensus 307 ~~~QV~NWF~NaR 319 (335)
.=|.-||.|.|
T Consensus 209 --RVVQVWFQNRR 219 (383)
T KOG4577|consen 209 --RVVQVWFQNRR 219 (383)
T ss_pred --eehhhhhhhhh
Confidence 35666999999
No 31
>KOG1168 consensus Transcription factor ACJ6/BRN-3, contains POU and HOX domains [Transcription]
Probab=86.78 E-value=0.43 Score=47.41 Aligned_cols=54 Identities=15% Similarity=0.204 Sum_probs=42.3
Q ss_pred HhhccCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCcccccccccccccccccccc
Q 019840 257 LRKRRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGR 319 (335)
Q Consensus 257 ~kkrKkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaR 319 (335)
-|||||.-.----.+-|..+|..- |-||-+--..+|++..|.+ .=|.-||-|.|
T Consensus 308 ekKRKRTSIAAPEKRsLEayFavQ---PRPS~EkIAaIAekLDLKK------NVVRVWFCNQR 361 (385)
T KOG1168|consen 308 EKKRKRTSIAAPEKRSLEAYFAVQ---PRPSGEKIAAIAEKLDLKK------NVVRVWFCNQR 361 (385)
T ss_pred ccccccccccCcccccHHHHhccC---CCCchhHHHHHHHhhhhhh------ceEEEEeeccH
Confidence 366666655444467788888865 9999999999999977754 57889999999
No 32
>KOG0849 consensus Transcription factor PRD and related proteins, contain PAX and HOX domains [Transcription]
Probab=86.64 E-value=0.47 Score=47.46 Aligned_cols=51 Identities=12% Similarity=0.100 Sum_probs=43.9
Q ss_pred cCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCccccccccccccccccccccc
Q 019840 261 RAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQ 320 (335)
Q Consensus 261 KkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRr 320 (335)
+|..|...-...|..||.. .|||.-...+.|+.+|||+- ..|.-||.|+|.
T Consensus 179 ~rtsft~~Q~~~le~~f~r---t~yP~i~~Re~La~~i~l~e------~riqvwf~nrra 229 (354)
T KOG0849|consen 179 NRTSFSPSQLEALEECFQR---TPYPDIVGRETLAKETGLPE------PRVQVWFQNRRA 229 (354)
T ss_pred cccccccchHHHHHHHhcC---CCCCchhhHHHHhhhccCCc------hHHHHHHhhhhh
Confidence 3556888888999999985 47999999999999999874 699999999884
No 33
>KOG0491 consensus Transcription factor BSH, contains HOX domain [General function prediction only]
Probab=86.32 E-value=0.36 Score=44.52 Aligned_cols=54 Identities=11% Similarity=0.064 Sum_probs=41.1
Q ss_pred HhhccCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCcccccccccccccccccccc
Q 019840 257 LRKRRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGR 319 (335)
Q Consensus 257 ~kkrKkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaR 319 (335)
.+.|-|..|+...-..|..=|..- -|=|-.|..+|+...+|+ -+||.+||.|.|
T Consensus 99 ~r~K~Rtvfs~~ql~~l~~rFe~Q---rYLS~~e~~ELan~L~LS------~~QVKTWFQNrR 152 (194)
T KOG0491|consen 99 RRRKARTVFSDPQLSGLEKRFERQ---RYLSTPERQELANALSLS------ETQVKTWFQNRR 152 (194)
T ss_pred HhhhhcccccCccccccHHHHhhh---hhcccHHHHHHHHHhhhh------HHHHHHHHHHHH
Confidence 344556677777777777666643 577888999999776655 579999999999
No 34
>KOG0489 consensus Transcription factor zerknullt and related HOX domain proteins [General function prediction only]
Probab=85.93 E-value=0.31 Score=46.58 Aligned_cols=54 Identities=17% Similarity=-0.012 Sum_probs=41.3
Q ss_pred hhccCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCccccccccccccccccccccc
Q 019840 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQ 320 (335)
Q Consensus 258 kkrKkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRr 320 (335)
.||.|..|++.-+--|..=| ..+.|=|-....++|....|+ -.||..||.|.|.
T Consensus 159 ~kR~RtayT~~QllELEkEF---hfN~YLtR~RRiEiA~~L~Lt------ErQIKIWFQNRRM 212 (261)
T KOG0489|consen 159 SKRRRTAFTRYQLLELEKEF---HFNKYLTRSRRIEIAHALNLT------ERQIKIWFQNRRM 212 (261)
T ss_pred CCCCCcccchhhhhhhhhhh---ccccccchHHHHHHHhhcchh------HHHHHHHHHHHHH
Confidence 45667778877766665333 356999999999999876665 5699999999994
No 35
>KOG0494 consensus Transcription factor CHX10 and related HOX domain proteins [General function prediction only]
Probab=82.65 E-value=1.1 Score=44.10 Aligned_cols=49 Identities=10% Similarity=-0.000 Sum_probs=39.1
Q ss_pred CCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCcccccccccccccccccccc
Q 019840 262 AGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGR 319 (335)
Q Consensus 262 kgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaR 319 (335)
|.+|..-...-|..-|.+- =||.---|+.|+..|.|. -..|.-||.|.|
T Consensus 145 RTiFT~~Qle~LEkaFkea---HYPDv~Are~la~ktelp------EDRIqVWfQNRR 193 (332)
T KOG0494|consen 145 RTIFTSYQLEELEKAFKEA---HYPDVYAREMLADKTELP------EDRIQVWFQNRR 193 (332)
T ss_pred cchhhHHHHHHHHHHHhhc---cCccHHHHHHHhhhccCc------hhhhhHHhhhhh
Confidence 4456666666777667643 599999999999999876 479999999999
No 36
>KOG0848 consensus Transcription factor Caudal, contains HOX domain [Transcription]
Probab=82.62 E-value=0.44 Score=46.84 Aligned_cols=32 Identities=19% Similarity=0.054 Sum_probs=27.9
Q ss_pred CCCCCCHHHHHHHHHHhCcccccccccccccccccccc
Q 019840 282 KWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGR 319 (335)
Q Consensus 282 ~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaR 319 (335)
..+|=|..-|.+||.-.||+ -.||..||-|.|
T Consensus 220 ~SryITirRKSELA~~LgLs------ERQVKIWFQNRR 251 (317)
T KOG0848|consen 220 TSRYITIRRKSELAATLGLS------ERQVKIWFQNRR 251 (317)
T ss_pred cccceeeehhHHHHHhhCcc------HhhhhHhhhhhh
Confidence 46999999999999776665 579999999999
No 37
>KOG0484 consensus Transcription factor PHOX2/ARIX, contains HOX domain [Transcription]
Probab=55.30 E-value=9.2 Score=33.19 Aligned_cols=49 Identities=10% Similarity=0.018 Sum_probs=32.1
Q ss_pred CCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCcccccccccccccccccccc
Q 019840 262 AGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGR 319 (335)
Q Consensus 262 kgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaR 319 (335)
|..|.....+-|..-|.+ .-||..=.+++||-.-.|+ -..|.-||.|.|
T Consensus 21 RTTFTS~QLkELErvF~E---THYPDIYTREEiA~kidLT------EARVQVWFQNRR 69 (125)
T KOG0484|consen 21 RTTFTSAQLKELERVFAE---THYPDIYTREEIALKIDLT------EARVQVWFQNRR 69 (125)
T ss_pred hhhhhHHHHHHHHHHHHh---hcCCcchhHHHHHHhhhhh------HHHHHHHHHhhH
Confidence 334444433444443432 2488888888999776655 458999999998
No 38
>KOG0847 consensus Transcription factor, contains HOX domain [Transcription]
Probab=49.35 E-value=9.1 Score=37.04 Aligned_cols=47 Identities=11% Similarity=-0.021 Sum_probs=33.4
Q ss_pred CCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCcccccccccccccccccccc
Q 019840 264 KLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGR 319 (335)
Q Consensus 264 kLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaR 319 (335)
.|.-.-...|..=|.+ .-||--.|..+||..-| ++.+||.-||.|.|
T Consensus 173 Tf~g~qi~~le~~feq---tkylaG~~ra~lA~~lg------mteSqvkVWFQNRR 219 (288)
T KOG0847|consen 173 TFTGHQIYQLERKFEQ---TKYLAGADRAQLAQELN------MTESQVKVWFQNRR 219 (288)
T ss_pred Cccchhhhhhhhhhhh---hhcccchhHHHhhcccc------ccHHHHHHHHhcch
Confidence 3444444445444443 47888999999996644 55799999999999
No 39
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=46.11 E-value=43 Score=33.90 Aligned_cols=47 Identities=13% Similarity=0.200 Sum_probs=38.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhhCC
Q 019840 132 KELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGV 180 (335)
Q Consensus 132 PELDqFMeaYc~~L~kykeEL~kP~~~~~~EA~~F~~~iE~QL~~L~~~ 180 (335)
-+-|.||-.|| |.+|..++.+-+|-++++|-..+..+-.|.+.+|.+
T Consensus 134 T~C~Hy~H~~C--laRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpV 180 (368)
T KOG4445|consen 134 TACDHYMHFAC--LARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPV 180 (368)
T ss_pred ehhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhH
Confidence 36799999999 677888887777777788888888889999999853
No 40
>PF07425 Pardaxin: Pardaxin; InterPro: IPR009990 This family consists of several Pardaxin proteins. Pardaxin, a 33-amino-acid pore-forming polypeptide toxin isolated from the Red Sea Moses sole Pardachirus marmoratus, has a helix-hinge-helix structure. This is a common structural motif found both in antibacterial peptides that can act selectively on bacterial membranes (e.g., cecropin), and in cytotoxic peptides that can lyse both mammalian and bacterial cells (e.g., melittin). Pardaxin possesses a high antibacterial activity with a significantly reduced haemolytic activity towards human red blood cells compared with melittin []. Pardaxin has also been found to have a shark repellent action [].; GO: 0005576 extracellular region; PDB: 1XC0_A 2KNS_A.
Probab=43.55 E-value=16 Score=24.90 Aligned_cols=19 Identities=37% Similarity=0.534 Sum_probs=15.6
Q ss_pred HHHHHhcCCChHHHHHHHH
Q 019840 73 CKAEIVGHPLYEQLLSAHV 91 (335)
Q Consensus 73 iKAkI~sHPlYp~LL~Ayi 91 (335)
+--||++.|||..||+|--
T Consensus 5 lipkiissplfktllsavg 23 (33)
T PF07425_consen 5 LIPKIISSPLFKTLLSAVG 23 (33)
T ss_dssp CHHHHCCTTTCHHHHHHHH
T ss_pred hhhHHHccHHHHHHHHHHH
Confidence 3468999999999998843
No 41
>KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only]
Probab=39.03 E-value=26 Score=31.43 Aligned_cols=45 Identities=9% Similarity=-0.008 Sum_probs=35.8
Q ss_pred HHHHHHHhccCCCCCCHHHHHHHHHHhCccccccccccccccccccccccc
Q 019840 272 LLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQGK 322 (335)
Q Consensus 272 iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRrR~ 322 (335)
.+..|.......|||.......|+..||++. .-|..||.|.|.+.
T Consensus 164 ~~~~~~~~~~~~~~P~~~~~~~l~~~~~~~~------~~~q~~~~~~~~~~ 208 (235)
T KOG0490|consen 164 QLEVLETVFRATPKPDADDREQLAEETGLSE------RVIQVWFQNRRAKL 208 (235)
T ss_pred hhHhhhhcccCCCCCchhhHHHHHHhcCCCh------hhhhhhcccHHHHH
Confidence 4445556666789999999999999998874 57899999999544
No 42
>PF12022 DUF3510: Domain of unknown function (DUF3510); InterPro: IPR024603 The COG complex comprises eight proteins (COG1-8) and plays critical roles in Golgi structure and function []. This uncharacterised domain is found in the C-terminal of COG complex subunit 2 proteins.
Probab=38.02 E-value=1.6e+02 Score=25.20 Aligned_cols=20 Identities=25% Similarity=0.268 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHhhhCC
Q 019840 161 MEAVMACWDLEQSLQSLTGV 180 (335)
Q Consensus 161 ~EA~~F~~~iE~QL~~L~~~ 180 (335)
.|...-.+++|.+|+.|-..
T Consensus 80 ~evL~sv~KtEeSL~rlkk~ 99 (125)
T PF12022_consen 80 SEVLTSVRKTEESLKRLKKR 99 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45555567899999988753
No 43
>PF05190 MutS_IV: MutS family domain IV C-terminus.; InterPro: IPR007861 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the clamp domain (domain 4) found in proteins of the MutS family. The clamp domain is inserted within the core domain at the top of the lever helices. It has a beta-sheet structure [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B 1WBD_A 1WB9_A 3K0S_A 1OH6_A ....
Probab=37.78 E-value=54 Score=25.09 Aligned_cols=25 Identities=28% Similarity=0.310 Sum_probs=19.7
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHh
Q 019840 129 LDDKELDQFMTHYVLLLYSFKEQLQ 153 (335)
Q Consensus 129 ~~DPELDqFMeaYc~~L~kykeEL~ 153 (335)
|-||+||+..+.|..+.....+.+.
T Consensus 1 g~d~~Ld~~~~~~~~~~~~l~~~~~ 25 (92)
T PF05190_consen 1 GFDEELDELREEYEEIEEELEELLE 25 (92)
T ss_dssp TSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999988776655543
No 44
>KOG4040 consensus NADH:ubiquinone oxidoreductase, NDUFB8/ASHI subunit [Energy production and conversion]
Probab=35.73 E-value=24 Score=32.62 Aligned_cols=37 Identities=16% Similarity=0.315 Sum_probs=27.4
Q ss_pred CCcchHHHHHHHHHHhccCCCCCC-HHHHHHHHHHhCc
Q 019840 264 KLPGDTTSLLKAWWLSHAKWPYPT-VSRTNSCIAISLF 300 (335)
Q Consensus 264 kLPKea~~iLk~W~~~H~~~PYPS-E~EK~~La~~TgL 300 (335)
+....+...+-.|...|.--|||+ |+|+..-|.+.||
T Consensus 20 ~v~~~g~rt~~gw~kD~kPgpyP~teeER~AAAkKY~l 57 (186)
T KOG4040|consen 20 NVMPRGPRTFDGWYKDHKPGPYPTTEEERRAAAKKYGL 57 (186)
T ss_pred cccccccccccccccccCCCCCCCCHHHHHHHHHHhCC
Confidence 334455667789999999999996 5666666777766
No 45
>PF13097 CENP-U: CENP-A nucleosome associated complex (NAC) subunit
Probab=35.33 E-value=1e+02 Score=28.72 Aligned_cols=46 Identities=15% Similarity=0.252 Sum_probs=37.5
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH-HHHHHHHHHHHHhhh
Q 019840 130 DDKELDQFMTHYVLLLYSFKEQLQQHVRVHAMEA-VMACWDLEQSLQSLT 178 (335)
Q Consensus 130 ~DPELDqFMeaYc~~L~kykeEL~kP~~~~~~EA-~~F~~~iE~QL~~L~ 178 (335)
+=-|||-...++-.++..|++.+.-.+= .+| ..|++.+..||-.+.
T Consensus 102 DItELDVvL~~FEk~~~eYkq~ieS~~c---r~AI~~F~~~~keqL~~~i 148 (175)
T PF13097_consen 102 DITELDVVLSAFEKTALEYKQSIESKIC---RKAINKFYSNFKEQLIEMI 148 (175)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhccHHH---HHHHHHHHHHHHHHHHHHH
Confidence 3479999999999999999999987763 334 458999999988655
No 46
>PF11348 DUF3150: Protein of unknown function (DUF3150); InterPro: IPR021496 This bacterial family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=31.24 E-value=2.6e+02 Score=27.00 Aligned_cols=20 Identities=15% Similarity=0.409 Sum_probs=11.3
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 019840 132 KELDQFMTHYVLLLYSFKEQ 151 (335)
Q Consensus 132 PELDqFMeaYc~~L~kykeE 151 (335)
.+-++|+..|=+.+..+..+
T Consensus 99 ~~k~~Fl~~Yd~~i~~w~~~ 118 (257)
T PF11348_consen 99 QEKQDFLANYDQAIEEWIDR 118 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44566666665555555554
No 47
>PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function.
Probab=28.03 E-value=18 Score=34.06 Aligned_cols=28 Identities=39% Similarity=0.548 Sum_probs=24.7
Q ss_pred hHHHHHHHhcCCChHHHHHHHHhchhccCCCC
Q 019840 70 TVKCKAEIVGHPLYEQLLSAHVSCLRIATPVD 101 (335)
Q Consensus 70 ~~~iKAkI~sHPlYp~LL~AyidC~KVGAPpe 101 (335)
...||..|..||++.+|+.||+ ||.|.-
T Consensus 110 ~~LL~e~~~~~pl~~rLVAAYl----iG~~v~ 137 (207)
T PF11288_consen 110 LRLLKEEIAGDPLRKRLVAAYL----IGYPVT 137 (207)
T ss_pred HHHHHHHhcCchHHhhhheeee----cCcccc
Confidence 3589999999999999999998 888754
No 48
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=27.82 E-value=48 Score=37.17 Aligned_cols=42 Identities=19% Similarity=0.097 Sum_probs=36.0
Q ss_pred HHHHHHHHHhccCCCCCCHHHHHHHHHHhCccccccccccccccccccccc
Q 019840 270 TSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQ 320 (335)
Q Consensus 270 ~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRr 320 (335)
+.+|+..|.. ++.|+++|-..++++-||. +.-|.-||-+.+-
T Consensus 568 ~sllkayyal---n~~ps~eelskia~qvglp------~~vvk~wfE~~~a 609 (1007)
T KOG3623|consen 568 TSLLKAYYAL---NGLPSEEELSKIAQQVGLP------FAVVKAWFEDEEA 609 (1007)
T ss_pred HHHHHHHHHh---cCCCCHHHHHHHHHHhccc------HHHHHHHHHhhhh
Confidence 7888888875 5999999999999998876 4689999999883
No 49
>PF12362 DUF3646: DNA polymerase III gamma and tau subunits C terminal; InterPro: IPR022107 This domain family is found in bacteria, and is approximately 120 amino acids in length. The family is found in association with PF00004 from PFAM. The proteins in this family are frequently annotated as the gamma and tau subunits of DNA polymerase III, however there is little accompanying literature to back this up.
Probab=25.71 E-value=65 Score=27.76 Aligned_cols=22 Identities=27% Similarity=0.381 Sum_probs=18.9
Q ss_pred hhHHHHHHHhcCCChHHHHHHH
Q 019840 69 ETVKCKAEIVGHPLYEQLLSAH 90 (335)
Q Consensus 69 e~~~iKAkI~sHPlYp~LL~Ay 90 (335)
+.+..++.+.+||++-..|.+|
T Consensus 87 ~~~~~~~~a~~~P~V~avL~~F 108 (117)
T PF12362_consen 87 AKEARRAAARAHPLVKAVLAAF 108 (117)
T ss_pred HHHHHHHHHHhCcHHHHHHHHC
Confidence 3457899999999999999887
No 50
>PF12323 HTH_OrfB_IS605: Helix-turn-helix domain; InterPro: IPR021027 This entry represents an N-terminal helix-turn-helix domain found in a variety of putative transposases [, , ]. It is usually associated with PF01385 from PFAM and PF07282 from PFAM.
Probab=25.01 E-value=16 Score=25.75 Aligned_cols=32 Identities=19% Similarity=0.092 Sum_probs=26.0
Q ss_pred CCCCHHHHHHHHHHhCccccccccccccccccccccccc
Q 019840 284 PYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQGK 322 (335)
Q Consensus 284 PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRrR~ 322 (335)
=|||.+++..|.+-.|..+ .|-||....|+..
T Consensus 9 l~Pt~~Q~~~L~~~~~~~R-------~vyN~~L~~~~~~ 40 (46)
T PF12323_consen 9 LYPTKEQEEKLERWFGACR-------FVYNWALAERKEA 40 (46)
T ss_pred EecCHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 4899999999999888765 6888888777543
No 51
>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]
Probab=24.99 E-value=40 Score=34.02 Aligned_cols=60 Identities=12% Similarity=0.162 Sum_probs=37.6
Q ss_pred HhhhhhhhhhHHHHHHh---hccCCCCcchHHHHHHHHHHhccCCCC------------CCHHHHHHHHHHhCcc
Q 019840 242 KQGYKEKIVDIREEILR---KRRAGKLPGDTTSLLKAWWLSHAKWPY------------PTVSRTNSCIAISLFN 301 (335)
Q Consensus 242 ~~ky~~~l~~l~~e~~k---krKkgkLPKea~~iLk~W~~~H~~~PY------------PSE~EK~~La~~TgLt 301 (335)
++||+..+-.+.+.|.. -++.|.||++|++.|.+|+.--..+-| |-.+=+..|++-+|..
T Consensus 3 l~ky~nl~r~~~r~~iNv~PiQrGGiLt~eArkal~E~gDGYSvCD~C~~Grldei~kPpI~~F~~dlaeFlg~D 77 (382)
T COG1103 3 LDKYGNLTRRLTRGFINVNPIQRGGILTEEARKALLEWGDGYSVCDFCLEGRLDEITKPPIKDFLEDLAEFLGMD 77 (382)
T ss_pred hhhhhhhhhHhhcCccccChhhccCcCCHHHHHHHHHhcCCcchhhhhccCccccccCCcHHHHHHHHHHHhCCc
Confidence 34565555444444432 367899999999999999852222222 4445566688877765
No 52
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=24.97 E-value=55 Score=38.69 Aligned_cols=63 Identities=14% Similarity=0.030 Sum_probs=43.9
Q ss_pred ccCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCcccccccccccccccccccccc-cccCCCcccc
Q 019840 260 RRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQG-KIGAGNGLAI 331 (335)
Q Consensus 260 rKkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRrR-~~~~~~g~~~ 331 (335)
++|-.+.-.-.++|+..+.. .-||++++-+.|.+.-+|. ..-|.-||-|+|.. +....||+++
T Consensus 905 a~~~~~~d~qlk~i~~~~~~---q~~~~~~~~E~l~~~~~~~------~~~i~vw~qna~~~s~k~~~n~~~~ 968 (1406)
T KOG1146|consen 905 AYRTQESDLQLKIIKACYEA---QRTPTMQECEVLEEPIGLP------KRVIQVWFQNARAKSKKAKLNGTAA 968 (1406)
T ss_pred hhccchhHHHHHHHHHHHhh---ccCChHHHHHhhcccccCC------cchhHHhhhhhhhhhhhhhhccccc
Confidence 33444555566777777764 4799999999998877665 46899999999942 2233355654
No 53
>PF02290 SRP14: Signal recognition particle 14kD protein; InterPro: IPR003210 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the 14 kDa SRP14 component. Both SRP9 and SRP14 have the same (beta)-alpha-beta(3)-alpha fold. The heterodimer has pseudo two-fold symmetry and is saddle-like, consisting of a curved six-stranded beta-sheet that has four helices packed on the convex side and an exposed concave surface lined with positively charged residues. The SRP9/SRP14 heterodimer is essential for SRP RNA binding, mediating the pausing of synthesis of ribosome associated nascent polypeptides that have been engaged by the targeting domain of SRP [].; GO: 0008312 7S RNA binding, 0030942 endoplasmic reticulum signal peptide binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0005786 signal recognition particle, endoplasmic reticulum targeting; PDB: 1914_A 1RY1_D 1E8O_B 2W9J_B.
Probab=24.00 E-value=56 Score=26.88 Aligned_cols=18 Identities=33% Similarity=0.610 Sum_probs=15.5
Q ss_pred CChhHHHHHHHHHHHHHH
Q 019840 130 DDKELDQFMTHYVLLLYS 147 (335)
Q Consensus 130 ~DPELDqFMeaYc~~L~k 147 (335)
.-.+|+.|..+|+.+|..
T Consensus 71 ~~~~l~~F~~~Y~~v~K~ 88 (93)
T PF02290_consen 71 DPDDLDKFWQSYANVLKA 88 (93)
T ss_dssp ETTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 457899999999999864
No 54
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.45 E-value=1.4e+02 Score=32.64 Aligned_cols=38 Identities=32% Similarity=0.496 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhh
Q 019840 134 LDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLT 178 (335)
Q Consensus 134 LDqFMeaYc~~L~kykeEL~kP~~~~~~EA~~F~~~iE~QL~~L~ 178 (335)
..-|-|.|+.-=.+-++|+++++ ...|..++.||+.|.
T Consensus 568 ~~vfrEqYi~~~dlV~~e~qrH~-------~~l~~~k~~QlQ~l~ 605 (741)
T KOG4460|consen 568 TQVFREQYILKQDLVKEEIQRHV-------KLLCDQKKKQLQDLS 605 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 34578888888888899999984 456899999999887
No 55
>PF07042 TrfA: TrfA protein; InterPro: IPR010751 This family consists of several bacterial TrfA proteins. The trfA operon of broad-host-range IncP plasmids is essential to activate the origin of vegetative replication in diverse species. The trfA operon encodes two ORFs. The first ORF is highly conserved and encodes a putative single-stranded DNA binding protein (Ssb). The second, trfA, contains two translational starts as in the IncP alpha plasmids, generating related polypeptides of 406 (TrfA1) and 282 (TrfA2) amino acids. TrfA2 is very similar to the IncP alpha product, whereas the N-terminal region of TrfA1 shows very little similarity to the equivalent region of IncP alpha TrfA1. This region has been implicated in the ability of IncP alpha plasmids to replicate efficiently in Pseudomonas aeruginosa [].
Probab=22.36 E-value=79 Score=31.22 Aligned_cols=49 Identities=24% Similarity=0.307 Sum_probs=34.5
Q ss_pred CCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCcccccccccccccccccccc
Q 019840 262 AGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGR 319 (335)
Q Consensus 262 kgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaR 319 (335)
|..|+....+-|-+.|..| ..|||-.-|+-.. +||-..+++.+|=.+.|
T Consensus 208 R~~L~~~lA~wLh~yyaSH-~~P~P~kvetl~~--------lcGS~~~~l~~FR~~Lk 256 (282)
T PF07042_consen 208 RRKLSPRLAKWLHGYYASH-KKPYPIKVETLRE--------LCGSESSRLRKFRQQLK 256 (282)
T ss_pred HhhcCcHHHHHHHHHHhcC-CCCCCccHHHHHH--------HcCCCccCHHHHHHHHH
Confidence 3456555456688888899 5799999997766 36666677777755544
No 56
>PF10782 DUF2602: Protein of unknown function (DUF2602); InterPro: IPR019718 This bacterial family of proteins that has no known function.
Probab=21.60 E-value=58 Score=25.24 Aligned_cols=40 Identities=18% Similarity=0.282 Sum_probs=28.8
Q ss_pred hhHHHHHHHHHHHH---HHHHHHHhhhhhhhHHHHHHHHH---HHHHHHHhh
Q 019840 132 KELDQFMTHYVLLL---YSFKEQLQQHVRVHAMEAVMACW---DLEQSLQSL 177 (335)
Q Consensus 132 PELDqFMeaYc~~L---~kykeEL~kP~~~~~~EA~~F~~---~iE~QL~~L 177 (335)
-|+|+.|++||.== ..++.+..|. -|..||. +|=.||+.|
T Consensus 8 ~~I~~L~dtyC~gC~lk~~~rk~~gk~------~ah~fCI~~CtVGkqik~l 53 (58)
T PF10782_consen 8 IEIDDLQDTYCKGCFLKKHFRKEKGKT------YAHSFCINQCTVGKQIKQL 53 (58)
T ss_pred HHHHHHHHHHhcCCchHHHhHHHhccc------ccchHHHHhCcHhHHHHHH
Confidence 37899999999854 6667888876 4888885 355555544
No 57
>COG5661 Predicted secreted Zn-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=21.23 E-value=2.6e+02 Score=26.62 Aligned_cols=45 Identities=24% Similarity=0.209 Sum_probs=37.4
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhhC
Q 019840 128 VLDDKELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTG 179 (335)
Q Consensus 128 ~~~DPELDqFMeaYc~~L~kykeEL~kP~~~~~~EA~~F~~~iE~QL~~L~~ 179 (335)
-++||||--|-.+|..-+.++.|- |+.=|..--+.||.+|.+|-.
T Consensus 108 r~a~pElalvwdtlladikrHEEr-------H~eiar~har~mEkaL~sl~p 152 (210)
T COG5661 108 RKADPELALVWDTLLADIKRHEER-------HAEIARYHAREMEKALLSLRP 152 (210)
T ss_pred CCCCHhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhcCC
Confidence 468999999999999888887664 456677778999999999864
Done!