Query 019840
Match_columns 335
No_of_seqs 228 out of 569
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 07:52:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019840.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019840hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lk2_A Homeobox protein TGIF1; 99.7 8.1E-18 2.8E-22 135.8 1.8 55 263-323 10-64 (89)
2 2dmn_A Homeobox protein TGIF2L 99.6 5.3E-17 1.8E-21 127.5 3.3 60 258-323 7-66 (83)
3 3k2a_A Homeobox protein MEIS2; 99.6 2E-16 7E-21 119.8 3.0 56 262-323 2-57 (67)
4 1x2n_A Homeobox protein pknox1 99.5 1.8E-15 6.1E-20 115.2 3.3 60 258-323 7-66 (73)
5 1du6_A PBX1, homeobox protein 99.5 4E-15 1.4E-19 110.4 4.3 58 259-322 4-61 (64)
6 1k61_A Mating-type protein alp 99.5 1.1E-14 3.6E-19 106.9 3.6 56 261-322 1-56 (60)
7 1puf_B PRE-B-cell leukemia tra 99.5 1E-14 3.4E-19 111.0 3.5 59 259-323 2-60 (73)
8 1mnm_C Protein (MAT alpha-2 tr 99.5 1.2E-14 4.3E-19 114.2 3.3 59 258-322 27-85 (87)
9 1le8_B Mating-type protein alp 99.5 1.4E-14 4.8E-19 113.4 3.5 60 258-323 2-61 (83)
10 1b72_B Protein (PBX1); homeodo 99.5 1.5E-14 5.3E-19 113.2 3.4 58 259-322 2-59 (87)
11 2ecc_A Homeobox and leucine zi 99.2 7.5E-12 2.6E-16 98.2 3.2 53 260-321 5-57 (76)
12 1akh_A Protein (mating-type pr 99.2 7.6E-12 2.6E-16 91.7 2.8 55 258-321 5-59 (61)
13 2da4_A Hypothetical protein DK 99.0 4.1E-11 1.4E-15 92.6 0.5 58 259-322 9-67 (80)
14 1bw5_A ISL-1HD, insulin gene e 99.0 2.3E-10 8E-15 85.2 3.0 56 258-322 3-58 (66)
15 2d5v_A Hepatocyte nuclear fact 98.9 2.7E-10 9.3E-15 98.6 3.4 61 257-326 96-156 (164)
16 2dmu_A Homeobox protein goosec 98.9 5.1E-10 1.7E-14 84.3 2.9 55 258-321 7-61 (70)
17 2hdd_A Protein (engrailed home 98.9 6.2E-10 2.1E-14 81.7 3.1 56 257-321 2-57 (61)
18 2e1o_A Homeobox protein PRH; D 98.9 5.6E-10 1.9E-14 84.2 2.9 55 258-321 7-61 (70)
19 1wh5_A ZF-HD homeobox family p 98.9 1.2E-09 4.1E-14 85.3 4.4 61 258-324 17-78 (80)
20 2da3_A Alpha-fetoprotein enhan 98.9 7.6E-10 2.6E-14 84.9 2.9 55 259-322 18-72 (80)
21 1jgg_A Segmentation protein EV 98.9 9.6E-10 3.3E-14 80.5 3.3 54 259-321 2-55 (60)
22 2da1_A Alpha-fetoprotein enhan 98.9 6E-10 2E-14 83.8 2.1 54 259-321 8-61 (70)
23 1fjl_A Paired protein; DNA-bin 98.9 8.4E-10 2.9E-14 85.4 2.9 55 259-322 19-73 (81)
24 2da2_A Alpha-fetoprotein enhan 98.9 8.9E-10 3E-14 82.8 2.9 55 258-321 7-61 (70)
25 3rkq_A Homeobox protein NKX-2. 98.8 7.6E-10 2.6E-14 79.6 2.2 55 258-321 2-56 (58)
26 1ig7_A Homeotic protein MSX-1; 98.8 1.2E-09 4E-14 79.2 3.1 54 259-321 1-54 (58)
27 2dmq_A LIM/homeobox protein LH 98.8 1E-09 3.5E-14 84.4 2.9 54 258-320 7-60 (80)
28 2k40_A Homeobox expressed in E 98.8 8.9E-10 3E-14 82.3 2.4 55 259-322 2-56 (67)
29 2djn_A Homeobox protein DLX-5; 98.8 1.3E-09 4.4E-14 82.2 3.0 56 259-323 8-63 (70)
30 2h1k_A IPF-1, pancreatic and d 98.8 1.4E-09 4.9E-14 80.4 3.2 56 258-322 3-58 (63)
31 2cra_A Homeobox protein HOX-B1 98.8 2.6E-09 8.8E-14 80.5 4.0 56 258-322 7-62 (70)
32 2vi6_A Homeobox protein nanog; 98.8 2.7E-09 9.1E-14 78.6 3.3 56 258-322 3-58 (62)
33 2l7z_A Homeobox protein HOX-A1 98.8 3.6E-09 1.2E-13 80.6 3.7 59 258-325 7-65 (73)
34 1ftt_A TTF-1 HD, thyroid trans 98.8 2.5E-09 8.6E-14 80.3 2.6 56 258-322 2-57 (68)
35 2dms_A Homeobox protein OTX2; 98.7 3.6E-09 1.2E-13 81.7 3.2 54 259-321 8-61 (80)
36 1ahd_P Antennapedia protein mu 98.7 2E-09 6.9E-14 81.0 1.7 54 258-320 2-55 (68)
37 2dn0_A Zinc fingers and homeob 98.7 4.5E-09 1.5E-13 80.5 3.6 54 260-322 10-63 (76)
38 3d1n_I POU domain, class 6, tr 98.7 3.2E-09 1.1E-13 91.2 2.9 55 259-322 94-148 (151)
39 2dmt_A Homeobox protein BARH-l 98.7 3.7E-09 1.3E-13 81.7 2.9 54 259-321 18-71 (80)
40 1yz8_P Pituitary homeobox 2; D 98.7 1.1E-09 3.7E-14 82.2 -0.1 55 258-321 3-57 (68)
41 3a02_A Homeobox protein arista 98.7 4.4E-09 1.5E-13 76.9 2.9 52 262-322 3-54 (60)
42 1nk2_P Homeobox protein VND; h 98.7 4.7E-09 1.6E-13 80.6 3.0 54 259-321 10-63 (77)
43 1zq3_P PRD-4, homeotic bicoid 98.7 4.7E-09 1.6E-13 78.8 2.3 55 259-322 3-57 (68)
44 2cuf_A FLJ21616 protein; homeo 98.7 5.1E-09 1.8E-13 83.5 2.3 54 258-320 7-75 (95)
45 2cue_A Paired box protein PAX6 98.7 5.2E-09 1.8E-13 80.9 2.3 55 258-321 7-61 (80)
46 2m0c_A Homeobox protein arista 98.7 9.1E-09 3.1E-13 77.8 3.0 54 259-321 10-63 (75)
47 2da5_A Zinc fingers and homeob 98.6 1.3E-08 4.5E-13 77.9 3.6 54 260-322 9-62 (75)
48 1uhs_A HOP, homeodomain only p 98.6 1E-08 3.5E-13 77.6 2.9 53 260-320 3-55 (72)
49 2kt0_A Nanog, homeobox protein 98.6 1.2E-08 4.2E-13 79.0 3.2 55 259-322 23-77 (84)
50 1puf_A HOX-1.7, homeobox prote 98.6 1.2E-08 4.1E-13 78.3 3.1 54 259-321 14-67 (77)
51 1b8i_A Ultrabithorax, protein 98.6 1.2E-08 4.2E-13 79.2 3.1 55 258-321 20-74 (81)
52 3nau_A Zinc fingers and homeob 98.6 1.1E-08 3.8E-13 78.5 2.5 48 265-321 11-58 (66)
53 3a01_A Homeodomain-containing 98.6 1.1E-08 3.9E-13 81.5 2.6 55 258-321 17-71 (93)
54 2hi3_A Homeodomain-only protei 98.6 1.4E-08 4.7E-13 77.2 2.9 54 259-320 3-56 (73)
55 2ecb_A Zinc fingers and homeob 98.6 1.6E-08 5.6E-13 81.0 3.2 50 263-321 16-65 (89)
56 3a03_A T-cell leukemia homeobo 98.6 1.8E-08 6E-13 73.0 2.8 49 264-321 3-51 (56)
57 2ly9_A Zinc fingers and homeob 98.6 3.2E-08 1.1E-12 75.0 4.1 54 259-321 7-60 (74)
58 1wh7_A ZF-HD homeobox family p 98.6 2.9E-08 9.9E-13 77.7 3.8 60 258-324 17-78 (80)
59 3nar_A ZHX1, zinc fingers and 98.6 2.6E-08 8.7E-13 79.7 3.3 54 259-321 26-79 (96)
60 2r5y_A Homeotic protein sex co 98.5 2.7E-08 9.4E-13 78.1 2.5 55 258-321 28-82 (88)
61 1mh3_A Maltose binding-A1 home 98.5 3E-08 1E-12 93.1 3.2 55 259-322 366-420 (421)
62 2e19_A Transcription factor 8; 98.5 4E-08 1.4E-12 73.8 3.2 55 262-325 7-61 (64)
63 1b72_A Protein (homeobox prote 98.5 2.9E-08 1E-12 79.3 2.5 55 258-321 34-88 (97)
64 2xsd_C POU domain, class 3, tr 98.5 5.5E-08 1.9E-12 85.1 3.4 53 258-319 99-151 (164)
65 2dmp_A Zinc fingers and homeob 98.5 5.7E-08 2E-12 77.0 3.2 52 262-322 17-68 (89)
66 2h8r_A Hepatocyte nuclear fact 98.5 5.6E-08 1.9E-12 89.7 2.8 62 258-322 142-218 (221)
67 1e3o_C Octamer-binding transcr 98.4 7.6E-08 2.6E-12 83.5 3.2 56 258-322 101-156 (160)
68 1au7_A Protein PIT-1, GHF-1; c 98.4 8.2E-08 2.8E-12 82.4 3.2 55 258-321 87-141 (146)
69 1wi3_A DNA-binding protein SAT 98.4 2.1E-07 7.1E-12 72.3 3.4 55 258-320 7-61 (71)
70 1lfb_A Liver transcription fac 98.3 2E-07 6.8E-12 75.9 2.5 61 258-321 9-84 (99)
71 2da6_A Hepatocyte nuclear fact 98.3 1.9E-07 6.5E-12 76.9 2.3 60 258-321 6-81 (102)
72 3l1p_A POU domain, class 5, tr 98.3 1.5E-07 5E-12 81.4 0.8 56 258-322 96-151 (155)
73 2l9r_A Homeobox protein NKX-3. 98.2 1.3E-06 4.5E-11 66.8 3.9 49 264-321 10-58 (69)
74 1ic8_A Hepatocyte nuclear fact 98.1 3.8E-07 1.3E-11 82.3 0.6 60 259-322 116-191 (194)
75 2cqx_A LAG1 longevity assuranc 98.1 9.8E-07 3.3E-11 67.5 2.4 53 260-321 10-63 (72)
76 2da7_A Zinc finger homeobox pr 97.8 6.5E-06 2.2E-10 64.0 2.7 50 267-325 14-63 (71)
77 1x2m_A LAG1 longevity assuranc 97.8 7E-06 2.4E-10 62.3 2.8 46 270-323 12-57 (64)
78 2ys9_A Homeobox and leucine zi 89.6 0.12 4.1E-06 40.0 1.5 45 265-318 13-57 (70)
79 2nzz_A Penetratin conjugated G 62.9 1.5 5E-05 29.9 -0.1 10 310-319 2-11 (37)
80 1xc0_A Pardaxin P-4, PA4; BEND 46.6 9.9 0.00034 24.9 1.8 18 74-91 6-23 (33)
81 2k6l_A Putative uncharacterize 31.9 39 0.0013 24.6 3.2 34 233-279 14-47 (51)
82 2w9j_A Signal recognition part 25.9 35 0.0012 27.1 2.3 23 130-152 63-85 (91)
83 1e8o_B SRP14, signal recogniti 25.2 34 0.0012 27.7 2.2 19 130-148 71-89 (106)
84 2i9o_A MHB8A peptide; beta-hai 23.0 64 0.0022 21.5 2.7 8 58-65 14-21 (37)
No 1
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.67 E-value=8.1e-18 Score=135.78 Aligned_cols=55 Identities=18% Similarity=0.332 Sum_probs=50.8
Q ss_pred CCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCcccccccccccccccccccccccc
Q 019840 263 GKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQGKI 323 (335)
Q Consensus 263 gkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRrR~~ 323 (335)
--||++++++|++||.+|..+||||++||..||.+|||+ ..||+|||+|+|+|..
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt------~~QV~~WF~NrR~R~k 64 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLS------TLQVCNWFINARRRLL 64 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSC------HHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcC------HHHHHHHHHHHHHHhh
Confidence 359999999999999999999999999999999999987 4699999999998764
No 2
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.64 E-value=5.3e-17 Score=127.52 Aligned_cols=60 Identities=20% Similarity=0.390 Sum_probs=55.2
Q ss_pred hhccCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCcccccccccccccccccccccccc
Q 019840 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQGKI 323 (335)
Q Consensus 258 kkrKkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRrR~~ 323 (335)
++|+|..||++++.+|..||..|..+||||.++|..||.+|||+. .||.|||+|+|+|..
T Consensus 7 ~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~------~qV~~WFqNrR~r~k 66 (83)
T 2dmn_A 7 GKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSL------LQISNWFINARRRIL 66 (83)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCH------HHHHHHHHHHHHHTH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCH------HHhhHHhhhhHhhhc
Confidence 567889999999999999999999999999999999999999874 699999999997753
No 3
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.60 E-value=2e-16 Score=119.76 Aligned_cols=56 Identities=21% Similarity=0.412 Sum_probs=48.6
Q ss_pred CCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCcccccccccccccccccccccccc
Q 019840 262 AGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQGKI 323 (335)
Q Consensus 262 kgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRrR~~ 323 (335)
.|+||++++.+|++||.+|..+||||.++|..||.+|||+. .||.|||.|+|+|..
T Consensus 2 ~g~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~------~qV~~WFqNrR~r~k 57 (67)
T 3k2a_A 2 SGIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTI------LQVNNWFINARRRIV 57 (67)
T ss_dssp ----CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCH------HHHHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCH------HHhhhhhHHHHHHHh
Confidence 47999999999999999999999999999999999999874 699999999997653
No 4
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.54 E-value=1.8e-15 Score=115.21 Aligned_cols=60 Identities=25% Similarity=0.451 Sum_probs=54.4
Q ss_pred hhccCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCcccccccccccccccccccccccc
Q 019840 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQGKI 323 (335)
Q Consensus 258 kkrKkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRrR~~ 323 (335)
.+|+|..|+++...+|..||..|..+|||+.+++..||.+|||+. .||.+||.|+|+|..
T Consensus 7 ~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~------~qV~~WFqNrR~r~k 66 (73)
T 1x2n_A 7 GKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTL------LQVNNWFINARRRIL 66 (73)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCH------HHHHHHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCH------HHHHHHhHHHHhhcc
Confidence 357788999999999999999999999999999999999998874 699999999997653
No 5
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.53 E-value=4e-15 Score=110.43 Aligned_cols=58 Identities=17% Similarity=0.208 Sum_probs=53.6
Q ss_pred hccCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCccccccccccccccccccccccc
Q 019840 259 KRRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQGK 322 (335)
Q Consensus 259 krKkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRrR~ 322 (335)
++++..|+++...+|..||.+|..+|||+.+++..||.+|||+ ..||.+||.|+|.|.
T Consensus 4 rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~------~~qV~~WFqNrR~r~ 61 (64)
T 1du6_A 4 HIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGIT------VSQVSNWFGNKRIRY 61 (64)
T ss_dssp CCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSC------HHHHHHHHHHHTTTS
T ss_pred CCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcC------HHHHHHHHHHHHHHh
Confidence 5778899999999999999999999999999999999999887 469999999999764
No 6
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.49 E-value=1.1e-14 Score=106.89 Aligned_cols=56 Identities=14% Similarity=0.341 Sum_probs=51.6
Q ss_pred cCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCccccccccccccccccccccccc
Q 019840 261 RAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQGK 322 (335)
Q Consensus 261 KkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRrR~ 322 (335)
|+..|+++...+|..||..|..+|||+.+++..||.+|||+. .||.+||.|.|.|.
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~------~qV~~WFqNrR~r~ 56 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSR------IQIKNWVSNRRRKE 56 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCH------HHHHHHHHHHHHHH
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCH------HHHHHHHHHHHccc
Confidence 467899999999999999999999999999999999998874 69999999999654
No 7
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.49 E-value=1e-14 Score=111.02 Aligned_cols=59 Identities=19% Similarity=0.248 Sum_probs=54.0
Q ss_pred hccCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCcccccccccccccccccccccccc
Q 019840 259 KRRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQGKI 323 (335)
Q Consensus 259 krKkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRrR~~ 323 (335)
+|++..|+++...+|..||..|..+|||+.+++..||.+|||+ ..||.+||.|+|.|..
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~------~~qV~~WFqNrR~r~k 60 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGIT------VSQVSNWFGNKRIRYK 60 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSC------HHHHHHHHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcC------HHHHHHHHHHHHhhcc
Confidence 5778899999999999999999999999999999999999887 4699999999996543
No 8
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.47 E-value=1.2e-14 Score=114.24 Aligned_cols=59 Identities=14% Similarity=0.325 Sum_probs=53.6
Q ss_pred hhccCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCccccccccccccccccccccccc
Q 019840 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQGK 322 (335)
Q Consensus 258 kkrKkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRrR~ 322 (335)
++|++..|+++...+|..||..|+.+|||+.+++..||.+|||+. .||.+||.|+|+|.
T Consensus 27 ~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~------~qV~~WFqNrR~r~ 85 (87)
T 1mnm_C 27 KPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSR------IQIKNWVSNRRRKE 85 (87)
T ss_dssp SCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCH------HHHHHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCH------HHHHHHHHHHHhhc
Confidence 356678899999999999999999999999999999999998874 69999999999764
No 9
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.47 E-value=1.4e-14 Score=113.36 Aligned_cols=60 Identities=15% Similarity=0.307 Sum_probs=51.7
Q ss_pred hhccCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCcccccccccccccccccccccccc
Q 019840 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQGKI 323 (335)
Q Consensus 258 kkrKkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRrR~~ 323 (335)
|++++..|+++...+|..||..|..+|||+.+++..||.+|||+ ..||.+||.|+|+|..
T Consensus 2 K~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt------~~qV~~WFqNrR~r~k 61 (83)
T 1le8_B 2 KPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLS------RIQIKNWVAARRAKEK 61 (83)
T ss_dssp ---CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCC------HHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCC------HHHcccccHHHHcccc
Confidence 34556669999999999999999999999999999999999887 4699999999996543
No 10
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.47 E-value=1.5e-14 Score=113.18 Aligned_cols=58 Identities=19% Similarity=0.264 Sum_probs=53.0
Q ss_pred hccCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCccccccccccccccccccccccc
Q 019840 259 KRRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQGK 322 (335)
Q Consensus 259 krKkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRrR~ 322 (335)
+|+|..|+++...+|..||..|..+|||+.+++..||.+|||+ ..||.+||.|+|.|.
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~------~~qV~~WFqNrR~r~ 59 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGIT------VSQVSNWFGNKRIRY 59 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSC------HHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcC------HHHHHHHHHHHHHHh
Confidence 5788999999999999999999999999999999999999887 469999999999654
No 11
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.18 E-value=7.5e-12 Score=98.17 Aligned_cols=53 Identities=9% Similarity=0.140 Sum_probs=48.3
Q ss_pred ccCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCcccccccccccccccccccccc
Q 019840 260 RRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQG 321 (335)
Q Consensus 260 rKkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRrR 321 (335)
+++++|+++...+|+.||..+ |||+.+|+.+||..|||+. .||.+||.|.|.+
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~---~YPs~~er~~LA~~tgLte------~qIkvWFqNrR~k 57 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQC---QWARREDYQKLEQITGLPR------PEIIQWFGDTRYA 57 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHC---SSCCHHHHHHHHHHTCCCH------HHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHC---CCCCHHHHHHHHHHHCcCH------HHhhHHhHhhHHH
Confidence 468899999999999999965 9999999999999999885 6999999999953
No 12
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.17 E-value=7.6e-12 Score=91.70 Aligned_cols=55 Identities=5% Similarity=-0.006 Sum_probs=44.7
Q ss_pred hhccCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCcccccccccccccccccccccc
Q 019840 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQG 321 (335)
Q Consensus 258 kkrKkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRrR 321 (335)
++|++..|+.+...+|..||..| |||+..++..||..+||+ ..||.+||.|.|.+
T Consensus 5 ~rr~Rt~ft~~q~~~Le~~f~~~---~yp~~~~r~~La~~~~l~------~~qV~~WFqNrR~k 59 (61)
T 1akh_A 5 SPKGKSSISPQARAFLEEVFRRK---QSLNSKEKEEVAKKCGIT------PLQVRVWFINKRMR 59 (61)
T ss_dssp -------CCHHHHHHHHHHHHHC---SSCCHHHHHHHHHHHTSC------HHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHhC---CCcCHHHHHHHHHHHCcC------HHHHHHHHHHHHhc
Confidence 35667889999999999999976 999999999999999887 46999999999965
No 13
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=4.1e-11 Score=92.64 Aligned_cols=58 Identities=9% Similarity=0.096 Sum_probs=51.2
Q ss_pred hccCCCCcchHHHHHHHHHHhc-cCCCCCCHHHHHHHHHHhCccccccccccccccccccccccc
Q 019840 259 KRRAGKLPGDTTSLLKAWWLSH-AKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQGK 322 (335)
Q Consensus 259 krKkgkLPKea~~iLk~W~~~H-~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRrR~ 322 (335)
+|+|..|+.+...+|..||..+ ..+|||+..++..||.++||+. .||.+||.|.|.+.
T Consensus 9 rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~------~qV~vWFqNrR~k~ 67 (80)
T 2da4_A 9 LQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDC------EIVRTWIGNRRRKY 67 (80)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCH------HHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCH------HHhhHhHHHHHHHH
Confidence 4667789999999999999877 6779999999999999998874 69999999999543
No 14
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=98.96 E-value=2.3e-10 Score=85.23 Aligned_cols=56 Identities=11% Similarity=0.111 Sum_probs=49.4
Q ss_pred hhccCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCccccccccccccccccccccccc
Q 019840 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQGK 322 (335)
Q Consensus 258 kkrKkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRrR~ 322 (335)
++|+|..|+.+...+|..||.. +|||+..++..||..+||+ ..||.+||.|.|.+.
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~------~~qV~~WFqNrR~k~ 58 (66)
T 1bw5_A 3 TTRVRTVLNEKQLHTLRTCYAA---NPRPDALMKEQLVEMTGLS------PRVIRVWFQNKRCKD 58 (66)
T ss_dssp CSCCCCCCSHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTSC------HHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHHCcC------HHHHHHHhHHHHHHH
Confidence 3567888999999999999987 4999999999999999887 469999999999543
No 15
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=98.95 E-value=2.7e-10 Score=98.61 Aligned_cols=61 Identities=11% Similarity=-0.003 Sum_probs=50.7
Q ss_pred HhhccCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCcccccccccccccccccccccccccCC
Q 019840 257 LRKRRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQGKIGAG 326 (335)
Q Consensus 257 ~kkrKkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRrR~~~~~ 326 (335)
..+|+|..|+.+...+|..||..| |||+..++..||.++||+. .||.+||.|.|+|....+
T Consensus 96 ~~rr~Rt~ft~~q~~~Le~~F~~~---~yp~~~~r~~la~~l~L~~------~qV~~WFqNrR~r~k~~~ 156 (164)
T 2d5v_A 96 TPKKPRLVFTDVQRRTLHAIFKEN---KRPSKELQITISQQLGLEL------STVSNFFMNARRRSLDKW 156 (164)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHC---SSCCHHHHHHHHHHHTCCH------HHHHHHHHHHHHTSSCC-
T ss_pred CCCCCCCcCCHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHCcCH------HHhhhcChhhhccccccC
Confidence 446778899999999999999987 9999999999999998874 699999999997765543
No 16
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.90 E-value=5.1e-10 Score=84.30 Aligned_cols=55 Identities=13% Similarity=0.100 Sum_probs=48.9
Q ss_pred hhccCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCcccccccccccccccccccccc
Q 019840 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQG 321 (335)
Q Consensus 258 kkrKkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRrR 321 (335)
.+|+|..|+.+...+|..||.. +|||+..++..||..+||+ ..||.+||.|.|.+
T Consensus 7 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~------~~qV~~WFqNrR~k 61 (70)
T 2dmu_A 7 GRRHRTIFTDEQLEALENLFQE---TKYPDVGTREQLARKVHLR------EEKVEVWFKNRRAK 61 (70)
T ss_dssp SCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCC------HHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCCC------HHHeehcccccccc
Confidence 3567788999999999999987 5999999999999999887 46999999999954
No 17
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=98.89 E-value=6.2e-10 Score=81.75 Aligned_cols=56 Identities=16% Similarity=0.038 Sum_probs=46.7
Q ss_pred HhhccCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCcccccccccccccccccccccc
Q 019840 257 LRKRRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQG 321 (335)
Q Consensus 257 ~kkrKkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRrR 321 (335)
.++|+|..|+.+...+|..+|.. +|||+..++..||..+||+. .||.+||.|.|.+
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~------~qV~~WFqNrR~k 57 (61)
T 2hdd_A 2 AEKRPRTAFSSEQLARLKREFNE---NRYLTERRRQQLSSELGLNE------AQIKIWFKNKRAK 57 (61)
T ss_dssp -----CCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCH------HHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCcCH------HHHHHHhhhhccc
Confidence 35678889999999999999986 49999999999999998874 6999999999964
No 18
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.89 E-value=5.6e-10 Score=84.18 Aligned_cols=55 Identities=13% Similarity=0.058 Sum_probs=48.6
Q ss_pred hhccCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCcccccccccccccccccccccc
Q 019840 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQG 321 (335)
Q Consensus 258 kkrKkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRrR 321 (335)
.+++|..|+.+...+|..||.. +|||+..++..||.++||+ ..||.+||.|.|.+
T Consensus 7 ~~r~R~~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~------~~qV~~WFqNrR~k 61 (70)
T 2e1o_A 7 GKGGQVRFSNDQTIELEKKFET---QKYLSPPERKRLAKMLQLS------ERQVKTWFQNRRAK 61 (70)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTTCC------HHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHHCCC------HHHhhHhhHhhHhh
Confidence 3567788999999999999986 5999999999999999877 46999999999954
No 19
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=98.88 E-value=1.2e-09 Score=85.30 Aligned_cols=61 Identities=8% Similarity=-0.042 Sum_probs=52.6
Q ss_pred hhccCCCCcchHHHHHHHHHHh-ccCCCCCCHHHHHHHHHHhCccccccccccccccccccccccccc
Q 019840 258 RKRRAGKLPGDTTSLLKAWWLS-HAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQGKIG 324 (335)
Q Consensus 258 kkrKkgkLPKea~~iLk~W~~~-H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRrR~~~ 324 (335)
+||+|..|+.+...+|..+|.. |..+|||+..++..||..+||+. .||..||.|.|.+...
T Consensus 17 ~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~------~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 17 RKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPR------QVLKVWLHNNKHSGPS 78 (80)
T ss_dssp SCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCH------HHHHHHHHHHSSSSSC
T ss_pred CCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCc------ccccCCccccCcCCCC
Confidence 3567788999999999999884 67789999999999999998874 6999999999966544
No 20
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=98.87 E-value=7.6e-10 Score=84.88 Aligned_cols=55 Identities=15% Similarity=0.085 Sum_probs=48.9
Q ss_pred hccCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCccccccccccccccccccccccc
Q 019840 259 KRRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQGK 322 (335)
Q Consensus 259 krKkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRrR~ 322 (335)
+|+|..|+.+...+|..||..+ |||+..++..||.++||+. .||.+||.|.|.+.
T Consensus 18 rr~Rt~ft~~Ql~~Le~~f~~~---~yp~~~~r~~La~~l~l~~------~qV~~WFqNrR~k~ 72 (80)
T 2da3_A 18 KRLRTTITPEQLEILYQKYLLD---SNPTRKMLDHIAHEVGLKK------RVVQVWFQNTRARE 72 (80)
T ss_dssp TTCCSSCCTTTHHHHHHHHHHC---SSCCHHHHHHHHHHHTSCH------HHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHCcCH------HHhHHHhHHHHHhH
Confidence 5667889999999999999875 9999999999999998874 69999999999543
No 21
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=98.86 E-value=9.6e-10 Score=80.48 Aligned_cols=54 Identities=13% Similarity=0.052 Sum_probs=47.8
Q ss_pred hccCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCcccccccccccccccccccccc
Q 019840 259 KRRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQG 321 (335)
Q Consensus 259 krKkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRrR 321 (335)
+|++..|+.+...+|..+|..+ |||+..++..||..+||+ ..||.+||.|.|.+
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~---~yp~~~~r~~La~~l~l~------~~qV~~WFqNrR~k 55 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKE---NYVSRPRRCELAAQLNLP------ESTIKVWFQNRRMK 55 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHC---SCCCHHHHHHHHHHHTSC------HHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHCcC------HHHHHHhhHHHHhH
Confidence 4678899999999999999864 999999999999999887 46999999999954
No 22
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=98.86 E-value=6e-10 Score=83.76 Aligned_cols=54 Identities=11% Similarity=0.121 Sum_probs=48.3
Q ss_pred hccCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCcccccccccccccccccccccc
Q 019840 259 KRRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQG 321 (335)
Q Consensus 259 krKkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRrR 321 (335)
+|+|..|+.+...+|..||..+ |||+..++..||..+||+ ..||.+||.|.|.+
T Consensus 8 rr~Rt~ft~~q~~~Le~~F~~~---~yp~~~~r~~LA~~l~l~------~~qV~~WFqNrR~k 61 (70)
T 2da1_A 8 KRPRTRITDDQLRVLRQYFDIN---NSPSEEQIKEMADKSGLP------QKVIKHWFRNTLFK 61 (70)
T ss_dssp CSCSCCCCHHHHHHHHHHHHHC---SSCCTTHHHHHHHHHCCC------HHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHC---CCCCHHHHHHHHHHhCCC------HHHHHHHhhhhhHH
Confidence 5677889999999999999864 999999999999999887 46999999999954
No 23
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=98.86 E-value=8.4e-10 Score=85.41 Aligned_cols=55 Identities=9% Similarity=0.062 Sum_probs=48.5
Q ss_pred hccCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCccccccccccccccccccccccc
Q 019840 259 KRRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQGK 322 (335)
Q Consensus 259 krKkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRrR~ 322 (335)
+|+|..|+.+...+|..||.. +|||+..++..||.++||+ ..||.+||.|.|.+.
T Consensus 19 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~------~~qV~~WFqNrR~k~ 73 (81)
T 1fjl_A 19 RRSRTTFSASQLDELERAFER---TQYPDIYTREELAQRTNLT------EARIQVWFQNRRARL 73 (81)
T ss_dssp CCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCC------HHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHCcC------HHHHHHHHHHHhhhh
Confidence 466778999999999999986 5999999999999999887 469999999999543
No 24
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=98.85 E-value=8.9e-10 Score=82.82 Aligned_cols=55 Identities=9% Similarity=0.150 Sum_probs=48.6
Q ss_pred hhccCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCcccccccccccccccccccccc
Q 019840 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQG 321 (335)
Q Consensus 258 kkrKkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRrR 321 (335)
++|+|..|+.+...+|..||.. +|||+..++..||..+||+ ..||.+||.|.|.+
T Consensus 7 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~------~~qV~~WFqNrR~k 61 (70)
T 2da2_A 7 GRSSRTRFTDYQLRVLQDFFDA---NAYPKDDEFEQLSNLLNLP------TRVIVVWFQNARQK 61 (70)
T ss_dssp SCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHSCCC------HHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHhCCC------HHHhHHhhHhhhHH
Confidence 3567788999999999999986 5999999999999998877 46999999999954
No 25
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=98.85 E-value=7.6e-10 Score=79.64 Aligned_cols=55 Identities=11% Similarity=0.051 Sum_probs=48.8
Q ss_pred hhccCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCcccccccccccccccccccccc
Q 019840 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQG 321 (335)
Q Consensus 258 kkrKkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRrR 321 (335)
++|++..|+.+...+|..+|. .+|||+..++..||..+||+. .||.+||.|.|.+
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~---~~~yp~~~~r~~La~~l~l~~------~qV~~WFqNrR~k 56 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFK---QQRYLSAPERDQLASVLKLTS------TQVKIWFQNRRYK 56 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHT---TCSSCCHHHHHHHHHHHTCCH------HHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHH---HcCCCCHHHHHHHHHHhCcCH------HHHHHhhHHhhcc
Confidence 467788999999999999997 469999999999999998874 6999999999964
No 26
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=98.85 E-value=1.2e-09 Score=79.24 Aligned_cols=54 Identities=7% Similarity=-0.004 Sum_probs=48.0
Q ss_pred hccCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCcccccccccccccccccccccc
Q 019840 259 KRRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQG 321 (335)
Q Consensus 259 krKkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRrR 321 (335)
+|++..|+.+...+|..+|.. +|||+..++..||..+||+ ..||.+||.|.|.+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~------~~qV~~WFqNrR~k 54 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQ---KQYLSIAERAEFSSSLSLT------ETQVKIWFQNRRAK 54 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHTTCC------HHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHHCcC------HHHhhhhhhHhhhh
Confidence 367788999999999999986 4999999999999998877 46999999999954
No 27
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=1e-09 Score=84.42 Aligned_cols=54 Identities=9% Similarity=0.093 Sum_probs=48.3
Q ss_pred hhccCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCccccccccccccccccccccc
Q 019840 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQ 320 (335)
Q Consensus 258 kkrKkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRr 320 (335)
++|+|..|+.+...+|..||..+ |||+..++..||.++||+ ..||.+||.|.|.
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~~---~yp~~~~r~~La~~l~l~------~~qV~~WFqNrR~ 60 (80)
T 2dmq_A 7 GKRMRTSFKHHQLRTMKSYFAIN---HNPDAKDLKQLAQKTGLT------KRVLQVWFQNARA 60 (80)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHC---SSCCHHHHHHHHHHTCCC------HHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHhCCC------HHHhhHccHHHHH
Confidence 35778899999999999999865 999999999999998877 4699999999994
No 28
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=98.84 E-value=8.9e-10 Score=82.29 Aligned_cols=55 Identities=9% Similarity=0.024 Sum_probs=48.7
Q ss_pred hccCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCccccccccccccccccccccccc
Q 019840 259 KRRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQGK 322 (335)
Q Consensus 259 krKkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRrR~ 322 (335)
+|+|..|+.+...+|..||.. +|||+..++..||..+||+ ..||.+||.|.|.+.
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~------~~qV~~WFqNrR~k~ 56 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRV---NCYPGIDILEDLAQKLNLE------LDRIQIWFQNRRAKL 56 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCC------HHHHHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCcC------HHHhhHhhHhHHHHH
Confidence 567889999999999999964 6999999999999999887 469999999999543
No 29
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.83 E-value=1.3e-09 Score=82.20 Aligned_cols=56 Identities=9% Similarity=-0.048 Sum_probs=48.9
Q ss_pred hccCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCcccccccccccccccccccccccc
Q 019840 259 KRRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQGKI 323 (335)
Q Consensus 259 krKkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRrR~~ 323 (335)
+|+|..|+.+...+|..||.. +|||+..++..||..+||+ ..||.+||.|.|.+..
T Consensus 8 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~------~~qV~~WFqNrR~k~k 63 (70)
T 2djn_A 8 RKPRTIYSSFQLAALQRRFQK---TQYLALPERAELAASLGLT------QTQVKIWFQNKRSKIK 63 (70)
T ss_dssp CCSSCSSCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHSSCC------HHHHHHHHHHHHHTCS
T ss_pred CCCCCCCCHHHHHHHHHHHcC---CCCCCHHHHHHHHHHhCCC------HHHHHHHHHHHhhhhc
Confidence 567788999999999999975 6999999999999999877 4699999999996543
No 30
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=98.83 E-value=1.4e-09 Score=80.38 Aligned_cols=56 Identities=13% Similarity=-0.025 Sum_probs=48.5
Q ss_pred hhccCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCccccccccccccccccccccccc
Q 019840 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQGK 322 (335)
Q Consensus 258 kkrKkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRrR~ 322 (335)
.+|+|..|+.+...+|..+|.. +|||+..++..||..+||+ ..||.+||.|.|.+.
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~------~~qV~~WFqNrR~k~ 58 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEFLF---NKYISRPRRVELAVMLNLT------ERHIKIWFQNRRMKW 58 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCC------HHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCcC------HHHhhHHHHhhhhhh
Confidence 4677889999999999999986 4999999999999999887 469999999999653
No 31
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.81 E-value=2.6e-09 Score=80.54 Aligned_cols=56 Identities=7% Similarity=0.003 Sum_probs=49.0
Q ss_pred hhccCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCccccccccccccccccccccccc
Q 019840 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQGK 322 (335)
Q Consensus 258 kkrKkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRrR~ 322 (335)
.+|+|..|+.+...+|..+|.. +|||+..++..||..+||+ ..||.+||.|.|.+.
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~------~~qV~~WFqNRR~k~ 62 (70)
T 2cra_A 7 GRKKRIPYSKGQLRELEREYAA---NKFITKDKRRKISAATSLS------ERQITIWFQNRRVKE 62 (70)
T ss_dssp CCCSCCCSCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCC------HHHHHHHHHHHHHTT
T ss_pred CCCCCCcCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCCC------HHHhhHhhHhHHHHh
Confidence 3567788999999999999986 4999999999999999877 469999999999543
No 32
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=98.78 E-value=2.7e-09 Score=78.57 Aligned_cols=56 Identities=11% Similarity=0.048 Sum_probs=46.0
Q ss_pred hhccCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCccccccccccccccccccccccc
Q 019840 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQGK 322 (335)
Q Consensus 258 kkrKkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRrR~ 322 (335)
++|+|..|+.+...+|..+|.. +|||+..++..||..+||+ ..||.+||.|.|.+.
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~------~~qV~~WFqNrR~k~ 58 (62)
T 2vi6_A 3 KQKMRTVFSQAQLCALKDRFQK---QKYLSLQQMQELSSILNLS------YKQVKTWFQNQRMKC 58 (62)
T ss_dssp -----CCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTCC------HHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCC------HHHhhHHhHHhhcch
Confidence 4567788999999999999986 5999999999999999877 469999999999553
No 33
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=98.77 E-value=3.6e-09 Score=80.61 Aligned_cols=59 Identities=8% Similarity=-0.026 Sum_probs=50.7
Q ss_pred hhccCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCcccccccccccccccccccccccccC
Q 019840 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQGKIGA 325 (335)
Q Consensus 258 kkrKkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRrR~~~~ 325 (335)
.+|+|..|+.+...+|..+|.. +|||+..++..||..+||+ ..||.+||.|.|.+....
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~------~~qV~vWFqNRR~k~kk~ 65 (73)
T 2l7z_A 7 GRKKRVPYTKVQLKELEREYAT---NKFITKDKRRRISATTNLS------ERQVTIWFQNRRVKEKKV 65 (73)
T ss_dssp CCCCCCCSCHHHHHHHHHHHHH---TSCCCHHHHHHHHHHHTSC------SHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCCCCHHHHHHHHHHHhh---CCCcCHHHHHHHHHHHCCC------HHHHHHHHHHHhHHHHHH
Confidence 3567788999999999999986 5999999999999999887 469999999999655443
No 34
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=98.76 E-value=2.5e-09 Score=80.31 Aligned_cols=56 Identities=11% Similarity=0.046 Sum_probs=49.2
Q ss_pred hhccCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCccccccccccccccccccccccc
Q 019840 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQGK 322 (335)
Q Consensus 258 kkrKkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRrR~ 322 (335)
++|++..|+.+...+|..+|.. +|||+..++..||..+||+ ..||.+||.|.|.+.
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~------~~qV~~WFqNRR~k~ 57 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQ---QKYLSAPEREHLASMIHLT------PTQVKIWFQNHRYKM 57 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHH---SSSCCHHHHHHHHHHHTSC------HHHHHHHHHHHHHHH
T ss_pred CCCCCCccCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCC------HHHhHHHhHHHhhhh
Confidence 4677888999999999999986 5999999999999999887 469999999999543
No 35
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.75 E-value=3.6e-09 Score=81.66 Aligned_cols=54 Identities=13% Similarity=0.099 Sum_probs=48.0
Q ss_pred hccCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCcccccccccccccccccccccc
Q 019840 259 KRRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQG 321 (335)
Q Consensus 259 krKkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRrR 321 (335)
+|+|..|+.+...+|..+|.. +|||+..++..||..+||+ ..||.+||.|.|.+
T Consensus 8 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~------~~qV~~WFqNRR~k 61 (80)
T 2dms_A 8 RRERTTFTRAQLDVLEALFAK---TRYPDIFMREEVALKINLP------ESRVQVWFKNRRAK 61 (80)
T ss_dssp CCCCSSCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTTCC------HHHHHHHHHHHHTH
T ss_pred CCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCcC------HHHhhhhhHHHhHH
Confidence 567788999999999999986 4999999999999998877 46999999999943
No 36
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=98.75 E-value=2e-09 Score=80.96 Aligned_cols=54 Identities=17% Similarity=0.012 Sum_probs=48.7
Q ss_pred hhccCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCccccccccccccccccccccc
Q 019840 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQ 320 (335)
Q Consensus 258 kkrKkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRr 320 (335)
++|+|..|+.+...+|..+|..+ |||+..++..||..+||+ ..||.+||.|.|.
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~---~yp~~~~r~~La~~l~l~------~~qV~vWFqNRR~ 55 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFN---RYLTRRRRIEIAHALSLT------ERQIKIWFQNRRM 55 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHC---SSCCTTHHHHHHHHHTCC------HHHHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHccC---CCCCHHHHHHHHHHHCcC------HhhhhHHhHHHHh
Confidence 56788899999999999999864 999999999999999887 4699999999994
No 37
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.75 E-value=4.5e-09 Score=80.51 Aligned_cols=54 Identities=15% Similarity=0.065 Sum_probs=47.5
Q ss_pred ccCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCccccccccccccccccccccccc
Q 019840 260 RRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQGK 322 (335)
Q Consensus 260 rKkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRrR~ 322 (335)
+.|..|+++...+|..||.. +|||+..++..||.++||+. .||.+||.|.|.+.
T Consensus 10 ~~R~~ft~~Ql~~Le~~F~~---~~yp~~~~r~~La~~~~l~~------~qV~~WFqNrR~k~ 63 (76)
T 2dn0_A 10 IYKNKKSHEQLSALKGSFCR---NQFPGQSEVEHLTKVTGLST------REVRKWFSDRRYHC 63 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHH---SSSCCSHHHHHHHHHHCCCH------HHHHHHHHHHHHHS
T ss_pred CCCccCCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCCCh------HHhhHHhHHHhHHH
Confidence 34678999999999999986 59999999999999998874 69999999999543
No 38
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=98.74 E-value=3.2e-09 Score=91.15 Aligned_cols=55 Identities=16% Similarity=0.184 Sum_probs=48.8
Q ss_pred hccCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCccccccccccccccccccccccc
Q 019840 259 KRRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQGK 322 (335)
Q Consensus 259 krKkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRrR~ 322 (335)
+|+|..|+.+...+|..||.. +|||+..++..||.++||+. .||.+||.|.|.|.
T Consensus 94 rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~------~qV~vWFqNrR~k~ 148 (151)
T 3d1n_I 94 RKRRTSFTPQAIEALNAYFEK---NPLPTGQEITEMAKELNYDR------EVVRVWFSNRRQTL 148 (151)
T ss_dssp CCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTSCH------HHHHHHHHHHHHHH
T ss_pred CCCCcccCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCCCH------HHhHHHHHHHHhcc
Confidence 456678999999999999987 59999999999999998874 69999999999654
No 39
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.74 E-value=3.7e-09 Score=81.72 Aligned_cols=54 Identities=9% Similarity=-0.058 Sum_probs=47.8
Q ss_pred hccCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCcccccccccccccccccccccc
Q 019840 259 KRRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQG 321 (335)
Q Consensus 259 krKkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRrR 321 (335)
+|+|..|+.+...+|..+|.. +|||+..++..||..+||+. .||.+||.|.|.+
T Consensus 18 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~------~qV~vWFqNRR~k 71 (80)
T 2dmt_A 18 RRSRTVFTELQLMGLEKRFEK---QKYLSTPDRIDLAESLGLSQ------LQVKTWYQNRRMK 71 (80)
T ss_dssp CCSCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCH------HHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCCCH------HHeeeccHHHHHH
Confidence 456778999999999999986 49999999999999998874 6999999999954
No 40
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=98.74 E-value=1.1e-09 Score=82.17 Aligned_cols=55 Identities=15% Similarity=0.144 Sum_probs=48.7
Q ss_pred hhccCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCcccccccccccccccccccccc
Q 019840 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQG 321 (335)
Q Consensus 258 kkrKkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRrR 321 (335)
++|+|..|+.+...+|..||.. +|||+..++..||..+||+ ..||.+||.|.|.+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~------~~qV~~WFqNrR~k 57 (68)
T 1yz8_P 3 QRRQRTHFTSQQLQQLEATFQR---NRYPDMSTREEIAVWTNLT------EARVRVWFKNRRAK 57 (68)
T ss_dssp SSCSCCCCCHHHHHHHHHHHTT---CSSCCTTTTTHHHHHTTSC------HHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCcC------HHHHHHHHHHHhHH
Confidence 4577889999999999999975 6999999999999999877 46999999999954
No 41
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=98.73 E-value=4.4e-09 Score=76.94 Aligned_cols=52 Identities=10% Similarity=-0.078 Sum_probs=44.7
Q ss_pred CCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCccccccccccccccccccccccc
Q 019840 262 AGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQGK 322 (335)
Q Consensus 262 kgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRrR~ 322 (335)
|..|+.+...+|..||.. +|||+..++..||..+||+ ..||.+||.|.|.+.
T Consensus 3 Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~------~~qV~~WFqNrR~k~ 54 (60)
T 3a02_A 3 HMTFTSFQLEELEKAFSR---THYPDVFTREELAMKIGLT------EARIQVWFQNRRAKW 54 (60)
T ss_dssp --CCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTSC------HHHHHHHHHHHHHHH
T ss_pred CcccCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHHCcC------HHHHHHHhhhhhhhh
Confidence 467899999999999976 5999999999999999887 469999999999543
No 42
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=98.72 E-value=4.7e-09 Score=80.58 Aligned_cols=54 Identities=11% Similarity=0.038 Sum_probs=47.5
Q ss_pred hccCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCcccccccccccccccccccccc
Q 019840 259 KRRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQG 321 (335)
Q Consensus 259 krKkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRrR 321 (335)
+|+|..|+.+...+|..+|.. +|||+..++..||..+||+ ..||.+||.|.|.+
T Consensus 10 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~------~~qV~~WFqNRR~k 63 (77)
T 1nk2_P 10 RKRRVLFTKAQTYELERRFRQ---QRYLSAPEREHLASLIRLT------PTQVKIWFQNHRYK 63 (77)
T ss_dssp CCCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHTTCC------HHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHhCCC------HHHHHHHhHHhhcc
Confidence 456678999999999999986 4999999999999998877 46999999999954
No 43
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=98.70 E-value=4.7e-09 Score=78.83 Aligned_cols=55 Identities=16% Similarity=0.124 Sum_probs=48.6
Q ss_pred hccCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCccccccccccccccccccccccc
Q 019840 259 KRRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQGK 322 (335)
Q Consensus 259 krKkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRrR~ 322 (335)
+|+|..|+.+...+|..+|.. +|||+..++..||..+||+ ..||.+||.|.|.+.
T Consensus 3 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~------~~qV~~WFqNRR~k~ 57 (68)
T 1zq3_P 3 RRTRTTFTSSQIAELEQHFLQ---GRYLTAPRLADLSAKLALG------TAQVKIWFKNRRRRH 57 (68)
T ss_dssp SCCSCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTSC------HHHHHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCcC------HHHhhHhhHHHHHHH
Confidence 567889999999999999975 6999999999999999887 469999999999543
No 44
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.68 E-value=5.1e-09 Score=83.45 Aligned_cols=54 Identities=13% Similarity=0.174 Sum_probs=47.6
Q ss_pred hhccCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhC---------------ccccccccccccccccccccc
Q 019840 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISL---------------FNSICTLNSYLVLNVVAGGRQ 320 (335)
Q Consensus 258 kkrKkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~Tg---------------Lt~~~~L~~~QV~NWF~NaRr 320 (335)
++|+|..|+.....+|..||.. +|||+..++..||..+| |+ ..||.+||.|.|.
T Consensus 7 ~rr~R~~ft~~ql~~Le~~F~~---~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls------~~qV~~WFqNRR~ 75 (95)
T 2cuf_A 7 GRGSRFTWRKECLAVMESYFNE---NQYPDEAKREEIANACNAVIQKPGKKLSDLERVT------SLKVYNWFANRRK 75 (95)
T ss_dssp CCCCSCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCC------HHHHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHCchhhcccccccccCcCC------HHHHHHHHHHHHH
Confidence 3566778999999999999997 59999999999999987 65 5799999999994
No 45
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.68 E-value=5.2e-09 Score=80.87 Aligned_cols=55 Identities=13% Similarity=0.053 Sum_probs=48.3
Q ss_pred hhccCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCcccccccccccccccccccccc
Q 019840 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQG 321 (335)
Q Consensus 258 kkrKkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRrR 321 (335)
.+|+|..|+.+...+|..+|.. +|||+..++..||..+||+ ..||.+||.|.|.+
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~------~~qV~vWFqNRR~k 61 (80)
T 2cue_A 7 GQRNRTSFTQEQIEALEKEFER---THYPDVFARERLAAKIDLP------EARIQVWFSNRRAK 61 (80)
T ss_dssp SCCCCCCSCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHTTCC------HHHHHHHHHHHHHH
T ss_pred CCCCCCccCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCCC------HHHhhHHHHHHHHH
Confidence 3567788999999999999974 6999999999999998877 46999999999954
No 46
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.66 E-value=9.1e-09 Score=77.79 Aligned_cols=54 Identities=13% Similarity=0.057 Sum_probs=47.4
Q ss_pred hccCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCcccccccccccccccccccccc
Q 019840 259 KRRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQG 321 (335)
Q Consensus 259 krKkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRrR 321 (335)
+|+|..|+.....+|..+|.. +|||+..++..||..+||+ ..||.+||.|.|.+
T Consensus 10 rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~------~~qV~~WFqNrR~k 63 (75)
T 2m0c_A 10 RRNRTTFTSYQLEELEKVFQK---THYPDVYAREQLAMRTDLT------EARVQVWFQNRRAK 63 (75)
T ss_dssp CSCSCSSCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCC------HHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCCC------HHHHHHHhHHHHHH
Confidence 455678999999999999986 4999999999999999887 46999999999954
No 47
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.65 E-value=1.3e-08 Score=77.94 Aligned_cols=54 Identities=7% Similarity=0.019 Sum_probs=47.1
Q ss_pred ccCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCccccccccccccccccccccccc
Q 019840 260 RRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQGK 322 (335)
Q Consensus 260 rKkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRrR~ 322 (335)
+|+.+++.+...+|..+|.. +|||+..++..||..+||+. .||.+||.|.|.+.
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~------~qV~~WFqNRR~k~ 62 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQ---NPLPLDEELDRLRSETKMTR------REIDSWFSERRKKV 62 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCH------HHHHHHHHHHTTHH
T ss_pred CCCccCCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCCCH------HHhhHhhHHHHHHH
Confidence 45667999999999999986 49999999999999998874 69999999999544
No 48
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.65 E-value=1e-08 Score=77.62 Aligned_cols=53 Identities=9% Similarity=-0.054 Sum_probs=46.5
Q ss_pred ccCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCccccccccccccccccccccc
Q 019840 260 RRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQ 320 (335)
Q Consensus 260 rKkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRr 320 (335)
|+|..|+.+...+|..+|.. .+|||+..++..||..+||+. .||.+||.|.|.
T Consensus 3 k~Rt~ft~~Q~~~Le~~F~~--~~~yp~~~~r~~LA~~l~l~~------~qV~~WFqNRR~ 55 (72)
T 1uhs_A 3 EGAATMTEDQVEILEYNFNK--VNKHPDPTTLCLIAAEAGLTE------EQTQKWFKQRLA 55 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHHS--SCSSCCHHHHHHHHHHHTCCH------HHHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHHHHc--cCCCCCHHHHHHHHHHHCcCH------HHhhHHhHHHHH
Confidence 56778999999999999963 159999999999999998874 699999999994
No 49
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=98.64 E-value=1.2e-08 Score=79.04 Aligned_cols=55 Identities=9% Similarity=0.063 Sum_probs=48.4
Q ss_pred hccCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCccccccccccccccccccccccc
Q 019840 259 KRRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQGK 322 (335)
Q Consensus 259 krKkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRrR~ 322 (335)
+|+|..|+.+...+|..+|.. +|||+..++..||..+||+ ..||.+||.|.|.+.
T Consensus 23 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~------~~qV~vWFqNRR~k~ 77 (84)
T 2kt0_A 23 QKTRTVFSSTQLCVLNDRFQR---QKYLSLQQMQELSNILNLS------YKQVKTWFQNQRMKS 77 (84)
T ss_dssp CCCSSCCCHHHHHHHHHHHHH---SSSCCHHHHHHHHHHTTCC------HHHHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHcCCC------HHHHHHHHHHHHHHH
Confidence 466788999999999999986 5999999999999998877 469999999999543
No 50
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=98.64 E-value=1.2e-08 Score=78.29 Aligned_cols=54 Identities=15% Similarity=0.030 Sum_probs=47.9
Q ss_pred hccCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCcccccccccccccccccccccc
Q 019840 259 KRRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQG 321 (335)
Q Consensus 259 krKkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRrR 321 (335)
+|+|..|+.+...+|..+|.. +|||+..++..||..+||+ ..||.+||.|.|.+
T Consensus 14 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~------~~qV~vWFqNRR~k 67 (77)
T 1puf_A 14 RKKRCPYTKHQTLELEKEFLF---NMYLTRDRRYEVARLLNLT------ERQVKIWFQNRRMK 67 (77)
T ss_dssp SCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCC------HHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHHCcC------HHHHHHHHHHHHHH
Confidence 466778999999999999986 4999999999999999887 46999999999954
No 51
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=98.63 E-value=1.2e-08 Score=79.18 Aligned_cols=55 Identities=15% Similarity=-0.000 Sum_probs=46.5
Q ss_pred hhccCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCcccccccccccccccccccccc
Q 019840 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQG 321 (335)
Q Consensus 258 kkrKkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRrR 321 (335)
++|+|..|+.+...+|..+|.. +|||+..++..||..+||+ ..||.+||.|.|.+
T Consensus 20 ~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~------~~qV~vWFqNRR~k 74 (81)
T 1b8i_A 20 RRRGRQTYTRYQTLELEKEFHT---NHYLTRRRRIEMAHALSLT------ERQIKIWFQNRRMK 74 (81)
T ss_dssp ----CCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCC------HHHHHHHHHHHHHH
T ss_pred CCCCCcccCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCC------HHHHHHHhHHhhhh
Confidence 4567889999999999999986 4999999999999999887 46999999999954
No 52
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=98.62 E-value=1.1e-08 Score=78.48 Aligned_cols=48 Identities=15% Similarity=0.156 Sum_probs=42.5
Q ss_pred CcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCcccccccccccccccccccccc
Q 019840 265 LPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQG 321 (335)
Q Consensus 265 LPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRrR 321 (335)
-.|+....|..+|... ||||..|+.+||..|||+. .||.+||.|.|.+
T Consensus 11 ~~~~Ql~~LE~~F~~~---~YPs~~er~eLA~~tgLt~------~qVkvWFqNRR~k 58 (66)
T 3nau_A 11 KTKEQIAHLKASFLQS---QFPDDAEVYRLIEVTGLAR------SEIKKWFSDHRYR 58 (66)
T ss_dssp CCHHHHHHHHHHHHGG---GSCCHHHHHHHHHHHCCCH------HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcC---CCCCHHHHHHHHHHhCcCH------HHhhHhcccchhh
Confidence 3578899999999965 9999999999999999885 6999999999943
No 53
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=98.62 E-value=1.1e-08 Score=81.52 Aligned_cols=55 Identities=11% Similarity=0.038 Sum_probs=48.2
Q ss_pred hhccCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCcccccccccccccccccccccc
Q 019840 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQG 321 (335)
Q Consensus 258 kkrKkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRrR 321 (335)
++|+|..|+.+...+|..+|..+ |||+..++..||..+||+ ..||.+||.|.|.+
T Consensus 17 ~rr~Rt~ft~~Ql~~Le~~F~~~---~yp~~~~r~~LA~~l~L~------~~qV~vWFqNRR~k 71 (93)
T 3a01_A 17 RKKPRTSFTRIQVAELEKRFHKQ---KYLASAERAALARGLKMT------DAQVKTWFQNRRTK 71 (93)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHC---SCCCHHHHHHHHHTTTCC------HHHHHHHHHHHHHH
T ss_pred CCCCCcCCCHHHHHHHHHHHHcC---CCcCHHHHHHHHHHhCCC------hhhcccccHhhhhh
Confidence 35667889999999999999865 999999999999998877 46999999999943
No 54
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.62 E-value=1.4e-08 Score=77.24 Aligned_cols=54 Identities=7% Similarity=-0.098 Sum_probs=46.9
Q ss_pred hccCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCccccccccccccccccccccc
Q 019840 259 KRRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQ 320 (335)
Q Consensus 259 krKkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRr 320 (335)
.++|..|+.+...+|..+|.. .+|||+..++..||..+||+. .||.+||.|.|.
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~--~~~yp~~~~r~~LA~~~~l~~------~qV~~WFqNRR~ 56 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNK--VNKHPDPTTLCLIAAEAGLTE------EQTQKWFKQRLA 56 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHH--TTSSCCHHHHHHHHHHHTSCH------HHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHh--cCCCCCHHHHHHHHHHHCcCH------HHHHHHHHHHHH
Confidence 356778999999999999973 149999999999999998874 699999999993
No 55
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.61 E-value=1.6e-08 Score=81.04 Aligned_cols=50 Identities=12% Similarity=0.051 Sum_probs=44.7
Q ss_pred CCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCcccccccccccccccccccccc
Q 019840 263 GKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQG 321 (335)
Q Consensus 263 gkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRrR 321 (335)
..++.+...+|..||..+ |||+..++..||..|||+. .||.+||.|.|.+
T Consensus 16 k~~t~~Ql~~Le~~F~~~---~yp~~~~r~~LA~~lgLte------~qVkvWFqNRR~k 65 (89)
T 2ecb_A 16 KEKTAEQLRVLQASFLNS---SVLTDEELNRLRAQTKLTR------REIDAWFTEKKKS 65 (89)
T ss_dssp CCCCHHHHHHHHHHHHHC---SSCCHHHHHHHHHHTCCCH------HHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHhCcCh------HHCeecccccchH
Confidence 378999999999999864 9999999999999999885 6999999999943
No 56
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=98.59 E-value=1.8e-08 Score=73.00 Aligned_cols=49 Identities=10% Similarity=0.033 Sum_probs=42.7
Q ss_pred CCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCcccccccccccccccccccccc
Q 019840 264 KLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQG 321 (335)
Q Consensus 264 kLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRrR 321 (335)
.|+.+...+|..+|.. +|||+..++..||..+||+ ..||.+||.|.|.+
T Consensus 3 ~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~------~~qV~~WFqNRR~k 51 (56)
T 3a03_A 3 SFSRSQVLELERRFLR---QKYLASAERAALAKALRMT------DAQVKTWFQNRRTK 51 (56)
T ss_dssp -CCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCC------HHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHh---cCCcCHHHHHHHHHHhCcC------HHHhhHhhHHhhhh
Confidence 4777888999999986 4999999999999999887 46999999999954
No 57
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.58 E-value=3.2e-08 Score=74.97 Aligned_cols=54 Identities=15% Similarity=0.065 Sum_probs=47.8
Q ss_pred hccCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCcccccccccccccccccccccc
Q 019840 259 KRRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQG 321 (335)
Q Consensus 259 krKkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRrR 321 (335)
++.|..|+.+...+|..+|.. +|||+..++..||..+||+. .||.+||.|.|.+
T Consensus 7 ~~~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~La~~l~l~~------~qV~~WFqNrR~k 60 (74)
T 2ly9_A 7 FGIRAKKTKEQLAELKVSYLK---NQFPHDSEIIRLMKITGLTK------GEIKKWFSDTRYN 60 (74)
T ss_dssp CCTTCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCH------HHHHHHHHHHHHH
T ss_pred CCCCcCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCcCH------HHeeeCChhHhHH
Confidence 356788999999999999986 59999999999999998874 6999999999954
No 58
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=98.58 E-value=2.9e-08 Score=77.73 Aligned_cols=60 Identities=8% Similarity=-0.017 Sum_probs=50.1
Q ss_pred hhccCCCCcchHHHHHHHHHHhccC--CCCCCHHHHHHHHHHhCccccccccccccccccccccccccc
Q 019840 258 RKRRAGKLPGDTTSLLKAWWLSHAK--WPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQGKIG 324 (335)
Q Consensus 258 kkrKkgkLPKea~~iLk~W~~~H~~--~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRrR~~~ 324 (335)
+||+|..|+.+...+|.. |..|+. +|||+..++.+||..+||+. .||..||.|.|.+...
T Consensus 17 ~rR~Rt~ft~~Ql~~Le~-F~~~~~w~~~yp~~~~r~~La~~lgL~e------~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 17 TKRFRTKFTAEQKEKMLA-FAERLGWRIQKHDDVAVEQFCAETGVRR------QVLKIWMHNNKNSGPS 78 (80)
T ss_dssp SSCCCCCCCHHHHHHHHH-HHHHHTSCCCSSTTHHHHHHHHHSCCCH------HHHHHHHHTTSCCSCC
T ss_pred CCCCCccCCHHHHHHHHH-HHHHcCcCCCCCCHHHHHHHHHHhCcCc------CcccccccccccCCCC
Confidence 356778899999999994 776544 89999999999999998875 6999999999965543
No 59
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=98.57 E-value=2.6e-08 Score=79.66 Aligned_cols=54 Identities=11% Similarity=0.098 Sum_probs=47.7
Q ss_pred hccCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCcccccccccccccccccccccc
Q 019840 259 KRRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQG 321 (335)
Q Consensus 259 krKkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRrR 321 (335)
+|+|..|+.+...+|..+|.. +|||+..++..||.++||+. .||.+||.|.|.+
T Consensus 26 ~r~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~------~qV~vWFqNRR~k 79 (96)
T 3nar_A 26 TGKICKKTPEQLHMLKSAFVR---TQWPSPEEYDKLAKESGLAR------TDIVSWFGDTRYA 79 (96)
T ss_dssp -CCSSSSCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCH------HHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCCCH------HHeeecchhhhhH
Confidence 467889999999999999985 59999999999999998874 6999999999954
No 60
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=98.53 E-value=2.7e-08 Score=78.07 Aligned_cols=55 Identities=15% Similarity=-0.038 Sum_probs=46.8
Q ss_pred hhccCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCcccccccccccccccccccccc
Q 019840 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQG 321 (335)
Q Consensus 258 kkrKkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRrR 321 (335)
.+|+|..|+.+...+|..+|.. +|||+..++..||..+||+ ..||.+||.|.|.+
T Consensus 28 ~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~La~~l~l~------~~qV~vWFqNRR~k 82 (88)
T 2r5y_A 28 TKRQRTSYTRYQTLELEKEFHF---NRYLTRRRRIEIAHALSLT------ERQIKIWFQNRRMK 82 (88)
T ss_dssp ---CCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHTTCC------HHHHHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCcC------HHHhhHHhHHHHHH
Confidence 4677889999999999999974 6999999999999998877 46999999999954
No 61
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=98.53 E-value=3e-08 Score=93.12 Aligned_cols=55 Identities=7% Similarity=-0.004 Sum_probs=47.7
Q ss_pred hccCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCccccccccccccccccccccccc
Q 019840 259 KRRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQGK 322 (335)
Q Consensus 259 krKkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRrR~ 322 (335)
++.+..|.+..+..|..+|..| |||+..+|.+||.+|||+. .||.+||.|+|+|.
T Consensus 366 ~~~~~~~~~~q~~~Le~~f~~~---~yp~~~~~~~la~~~~l~~------~qv~~wf~n~r~~~ 420 (421)
T 1mh3_A 366 TAAAAAISPQARAFLEQVFRRK---QSLNSKEKEEVAKKCGITP------LQVRVWFINKRMRS 420 (421)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHC---SCCCHHHHHHHHHHHTSCH------HHHHHHHHHHHCCC
T ss_pred hhhhhhhcchHHHHHHHHHhcC---CCcCHHHHHHHHHHHCcCH------HHhhHhhhhccccc
Confidence 3456678899999999999765 9999999999999998874 69999999999774
No 62
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.53 E-value=4e-08 Score=73.76 Aligned_cols=55 Identities=16% Similarity=0.105 Sum_probs=46.6
Q ss_pred CCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCcccccccccccccccccccccccccC
Q 019840 262 AGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQGKIGA 325 (335)
Q Consensus 262 kgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRrR~~~~ 325 (335)
.....++...+|..+|. .+|||+..++..||.++||+. .||..||.|.|.|.+..
T Consensus 7 ~~~p~~~Ql~~Le~~F~---~~~yp~~~~r~~LA~~l~L~e------~qVqvWFqNRRak~~~~ 61 (64)
T 2e19_A 7 GQPPLKNLLSLLKAYYA---LNAQPSAEELSKIADSVNLPL------DVVKKWFEKMQAGQISV 61 (64)
T ss_dssp CCCCCHHHHHHHHHHHT---TCSSCCHHHHHHHHHHHTCCH------HHHHHHHHHHHHTCSCS
T ss_pred CCCccHHHHHHHHHHHh---cCCCcCHHHHHHHHHHhCcCh------hhcCcchhcccCCCCCC
Confidence 34566778899999996 469999999999999998874 69999999999877664
No 63
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=98.52 E-value=2.9e-08 Score=79.32 Aligned_cols=55 Identities=13% Similarity=-0.044 Sum_probs=46.8
Q ss_pred hhccCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCcccccccccccccccccccccc
Q 019840 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQG 321 (335)
Q Consensus 258 kkrKkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRrR 321 (335)
.+|+|..|+.+...+|..+|.. +|||+..++..||..+||+ ..||.+||.|.|.+
T Consensus 34 ~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~------~~qV~vWFqNRR~k 88 (97)
T 1b72_A 34 PSGLRTNFTTRQLTELEKEFHF---NKYLSRARRVEIAATLELN------ETQVKIWFQNRRMK 88 (97)
T ss_dssp ---CCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCC------HHHHHHHHHHHHHH
T ss_pred CCCCCcCcCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCCC------HHHhHHHHHHHhHH
Confidence 4567888999999999999975 5999999999999999887 46999999999943
No 64
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=98.48 E-value=5.5e-08 Score=85.11 Aligned_cols=53 Identities=11% Similarity=0.191 Sum_probs=42.9
Q ss_pred hhccCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCcccccccccccccccccccc
Q 019840 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGR 319 (335)
Q Consensus 258 kkrKkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaR 319 (335)
++|+|..|+.....+|..+|.. +|||+..++..||..+||+. .||.+||.|.|
T Consensus 99 ~rr~Rt~ft~~Ql~~LE~~F~~---~~yp~~~~r~~LA~~l~L~~------~qV~vWFqNRR 151 (164)
T 2xsd_C 99 KRKKRTSIEVGVKGALESHFLK---CPKPSAHEITGLADSLQLEK------EVVRVWFCNRR 151 (164)
T ss_dssp -------CCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCH------HHHHHHHHHHH
T ss_pred CCCCceeccHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHCCCh------hhhhhhhHHhh
Confidence 4567788999999999999986 59999999999999998874 69999999999
No 65
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.48 E-value=5.7e-08 Score=76.95 Aligned_cols=52 Identities=10% Similarity=0.102 Sum_probs=44.9
Q ss_pred CCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCccccccccccccccccccccccc
Q 019840 262 AGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQGK 322 (335)
Q Consensus 262 kgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRrR~ 322 (335)
..+++.+...+|..+|..+ |||+..++..||.+|||+. .||.+||.|.|.|.
T Consensus 17 ~k~~t~~Ql~~Le~~F~~~---~yp~~~~r~~La~~~~l~~------~qV~vWFqNRR~k~ 68 (89)
T 2dmp_A 17 FKEKTQGQVKILEDSFLKS---SFPTQAELDRLRVETKLSR------REIDSWFSERRKLR 68 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHC---SSCCHHHHHHHHHHHTCCH------HHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHccC---CCCCHHHHHHHHHHhCCCH------HhccHhhHhHHHHH
Confidence 3348888899999999865 9999999999999998874 69999999999544
No 66
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=98.45 E-value=5.6e-08 Score=89.68 Aligned_cols=62 Identities=13% Similarity=0.039 Sum_probs=50.1
Q ss_pred hhccCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCcc----------c-----cccccccccccccccccccc
Q 019840 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFN----------S-----ICTLNSYLVLNVVAGGRQGK 322 (335)
Q Consensus 258 kkrKkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt----------~-----~~~L~~~QV~NWF~NaRrR~ 322 (335)
++|.|-.|++....+|..||.. +|||++.++++||+.+|+- . ...||-.||.|||.|.|.+.
T Consensus 142 ~RR~R~~ft~~ql~~Le~~F~~---~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~~ 218 (221)
T 2h8r_A 142 MRRNRFKWGPASQQILYQAYDR---QKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 218 (221)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTTC
T ss_pred CCCCCcCCCHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhhh
Confidence 3556678999999999999997 5999999999999998720 0 01256789999999999764
No 67
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=98.44 E-value=7.6e-08 Score=83.49 Aligned_cols=56 Identities=11% Similarity=0.107 Sum_probs=47.8
Q ss_pred hhccCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCccccccccccccccccccccccc
Q 019840 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQGK 322 (335)
Q Consensus 258 kkrKkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRrR~ 322 (335)
++|+|..|+.+...+|..+|.. +|||+..++..||..+||+. .||.+||.|.|.+.
T Consensus 101 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~------~qV~vWFqNRR~k~ 156 (160)
T 1e3o_C 101 RRKKRTSIETNIRVALEKSFME---NQKPTSEDITLIAEQLNMEK------EVIRVWFSNRRQKE 156 (160)
T ss_dssp ---CCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCH------HHHHHHHHHHHHHH
T ss_pred CCcCccccCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHHCCCh------HHhhHhhHHhhhhh
Confidence 4677889999999999999987 59999999999999998874 69999999999543
No 68
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=98.43 E-value=8.2e-08 Score=82.36 Aligned_cols=55 Identities=11% Similarity=0.071 Sum_probs=47.7
Q ss_pred hhccCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCcccccccccccccccccccccc
Q 019840 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQG 321 (335)
Q Consensus 258 kkrKkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRrR 321 (335)
++|+|..|+.+...+|..+|.. +|||+..++..||..+||+. .||.+||.|.|.+
T Consensus 87 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~------~qV~vWFqNRR~k 141 (146)
T 1au7_A 87 KRKRRTTISIAAKDALERHFGE---HSKPSSQEIMRMAEELNLEK------EVVRVWFCNRRQR 141 (146)
T ss_dssp --CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCH------HHHHHHHHHHHHH
T ss_pred CCCCCcCccHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCCCh------hhchhhhHhhhhh
Confidence 3566778999999999999987 59999999999999998874 6999999999954
No 69
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.35 E-value=2.1e-07 Score=72.33 Aligned_cols=55 Identities=13% Similarity=0.129 Sum_probs=48.9
Q ss_pred hhccCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCccccccccccccccccccccc
Q 019840 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQ 320 (335)
Q Consensus 258 kkrKkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRr 320 (335)
+||.|..|+.++..+|+.-|.. ..|||+++++..|+.+|||+. .+|.-||-|.|-
T Consensus 7 ~kR~RT~~s~eQL~~Lqs~f~~--~~~yPd~~~r~~La~~tGL~~------~~IqVWFQNrR~ 61 (71)
T 1wi3_A 7 GPRSRTKISLEALGILQSFIHD--VGLYPDQEAIHTLSAQLDLPK------HTIIKFFQNQRY 61 (71)
T ss_dssp CCCCCCCCCSHHHHHHHHHHHH--HCSCCCHHHHHHHHHHSCCCH------HHHHHHHHHHHH
T ss_pred CCCCCccCCHHHHHHHHHHHHh--cCCCCCHHHHHHHHHHhCCCH------HHHHHhhcccee
Confidence 4677889999999999999986 149999999999999999875 699999999994
No 70
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=98.31 E-value=2e-07 Score=75.86 Aligned_cols=61 Identities=13% Similarity=0.034 Sum_probs=45.3
Q ss_pred hhccCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCc----------cc--ccc---cccccccccccccccc
Q 019840 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLF----------NS--ICT---LNSYLVLNVVAGGRQG 321 (335)
Q Consensus 258 kkrKkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgL----------t~--~~~---L~~~QV~NWF~NaRrR 321 (335)
++|+|..|+.....+|..+|.. +|||+..++.+||..++. +. ..| |+-.||.+||.|.|.+
T Consensus 9 ~rr~Rt~ft~~Ql~~LE~~F~~---~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k 84 (99)
T 1lfb_A 9 GRRNRFKWGPASQQILFQAYER---QKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 84 (99)
T ss_dssp ----CCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHT
T ss_pred CCCCCcCcCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHH
Confidence 4566778999999999999975 599999999999999430 00 012 5578999999999953
No 71
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.30 E-value=1.9e-07 Score=76.95 Aligned_cols=60 Identities=15% Similarity=0.089 Sum_probs=48.5
Q ss_pred hhccCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHh----------------Ccccccccccccccccccccccc
Q 019840 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAIS----------------LFNSICTLNSYLVLNVVAGGRQG 321 (335)
Q Consensus 258 kkrKkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~T----------------gLt~~~~L~~~QV~NWF~NaRrR 321 (335)
++|+|-.+++....+|..+|..+ |||+.++++.||+.+ ||.. -.|+-.||.|||.|.|.+
T Consensus 6 ~Rr~Rt~ft~~ql~~Le~~F~~~---~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~-~~lte~~V~~WFqNRR~k 81 (102)
T 2da6_A 6 SGRNRFKWGPASQQILYQAYDRQ---KNPSKEEREALVEECNRAECLQRGVSPSKAHGLGS-NLVTEVRVYNWFANRRKE 81 (102)
T ss_dssp SCCCCCCCCHHHHHHHHHHHTTC---SSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGG-GCCCHHHHHHHHHHHHHH
T ss_pred CCCCCccCCHHHHHHHHHHHcCC---CCCCHHHHHHHHHHHHHhhhcccccccchhccccc-ccccccceeeeecchHHH
Confidence 35667789999999999999854 999999999999998 3331 135667999999999943
No 72
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=98.26 E-value=1.5e-07 Score=81.43 Aligned_cols=56 Identities=20% Similarity=0.205 Sum_probs=48.4
Q ss_pred hhccCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCccccccccccccccccccccccc
Q 019840 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQGK 322 (335)
Q Consensus 258 kkrKkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRrR~ 322 (335)
++|+|..|+.....+|..||. .+|||+..++..||.++||+ ..||.+||.|.|.+.
T Consensus 96 ~rr~Rt~ft~~Q~~~Le~~F~---~~~yps~~~r~~LA~~l~L~------~~qV~vWFqNRR~k~ 151 (155)
T 3l1p_A 96 RKRKRTSIENRVRWSLETMFL---KSPKPSLQQITHIANQLGLE------KDVVRVWFSNRRQKG 151 (155)
T ss_dssp SCCCCCCCCHHHHHHHHTTTT---TCSCCCHHHHHHHHHHTTCC------HHHHHHHHHHHHHHH
T ss_pred CCCCCcccCHHHHHHHHHHHc---cCCCCCHHHHHHHHHHcCCC------hhheeeccccccccc
Confidence 456677899999999999986 56999999999999998877 469999999999653
No 73
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.16 E-value=1.3e-06 Score=66.75 Aligned_cols=49 Identities=8% Similarity=-0.060 Sum_probs=41.6
Q ss_pred CCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCcccccccccccccccccccccc
Q 019840 264 KLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQG 321 (335)
Q Consensus 264 kLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRrR 321 (335)
.++......|..+|.. +|||+..++..||..+||+ ..||.+||.|.|.+
T Consensus 10 ~~t~~ql~~LE~~F~~---~~yp~~~~r~~LA~~l~Lt------e~qVqvWFqNRRak 58 (69)
T 2l9r_A 10 HMSHTQVIELERKFSH---QKYLSAPERAHLAKNLKLT------ETQVKIWFQNRRYK 58 (69)
T ss_dssp CCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHTTCC------HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCC------hhheeecchhhhhh
Confidence 3556678899999976 4999999999999998877 46999999999943
No 74
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=98.13 E-value=3.8e-07 Score=82.29 Aligned_cols=60 Identities=15% Similarity=0.145 Sum_probs=48.2
Q ss_pred hccCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCcccccc----------------ccccccccccccccccc
Q 019840 259 KRRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICT----------------LNSYLVLNVVAGGRQGK 322 (335)
Q Consensus 259 krKkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~----------------L~~~QV~NWF~NaRrR~ 322 (335)
+|+|..|++....+|..+|..+ |||+..++..||..+|+- .|. |+-.||.|||.|.|.+.
T Consensus 116 rr~R~~ft~~ql~~Le~~F~~~---~yp~~~~Re~la~~~~~~-~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~ 191 (194)
T 1ic8_A 116 RRNRFKWGPASQQILFQAYERQ---KNPSKEERETLVEECNRA-ECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 191 (194)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHH---CCCCTTTTHHHHHHHHHH-HHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHC
T ss_pred CCCCcccCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHhCch-hhccccccccccccccccccCccccchhchhhhhhh
Confidence 5667789999999999999975 999999999999998710 000 45679999999999653
No 75
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.11 E-value=9.8e-07 Score=67.48 Aligned_cols=53 Identities=9% Similarity=-0.003 Sum_probs=44.1
Q ss_pred ccCCCCcchHHHHHHHHH-HhccCCCCCCHHHHHHHHHHhCcccccccccccccccccccccc
Q 019840 260 RRAGKLPGDTTSLLKAWW-LSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQG 321 (335)
Q Consensus 260 rKkgkLPKea~~iLk~W~-~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRrR 321 (335)
|++..+..+...+|...| .. ++||+..++..||.++||+ ..||..||.|.|.+
T Consensus 10 k~r~r~~~~ql~~LE~~F~~~---~~yp~~~~r~~LA~~l~l~------e~qVqvWFqNRR~k 63 (72)
T 2cqx_A 10 KDSPVNKVEPNDTLEKVFVSV---TKYPDEKRLKGLSKQLDWS------VRKIQCWFRHRRNQ 63 (72)
T ss_dssp CCCCCSCSCSTTHHHHHHHHT---CSSCCHHHHHHHHHHTTCC------HHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCCC------hhhcchhhhhcccC
Confidence 445567777789999998 53 5999999999999998877 46999999999954
No 76
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.84 E-value=6.5e-06 Score=64.03 Aligned_cols=50 Identities=14% Similarity=0.058 Sum_probs=43.7
Q ss_pred chHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCcccccccccccccccccccccccccC
Q 019840 267 GDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQGKIGA 325 (335)
Q Consensus 267 Kea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRrR~~~~ 325 (335)
|+-..+|+..|..+ ||||.+|...||+.+||. ...|.-||-|.|.+.++.
T Consensus 14 k~ql~~Lk~yF~~n---~~Ps~eei~~LA~~lgL~------~~VVrVWFqNrRa~~~~~ 63 (71)
T 2da7_A 14 KDHMSVLKAYYAMN---MEPNSDELLKISIAVGLP------QEFVKEWFEQRKVYQYSN 63 (71)
T ss_dssp THHHHHHHHHHHHC---SSCCHHHHHHHHHHHTCC------HHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhC---CCCCHHHHHHHHHHhCCC------HHHHHHHHhhccccccCC
Confidence 56688999998875 999999999999999987 479999999999877765
No 77
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=97.84 E-value=7e-06 Score=62.27 Aligned_cols=46 Identities=9% Similarity=0.013 Sum_probs=37.4
Q ss_pred HHHHHHHHHhccCCCCCCHHHHHHHHHHhCcccccccccccccccccccccccc
Q 019840 270 TSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQGKI 323 (335)
Q Consensus 270 ~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRrR~~ 323 (335)
..+|...|.. .++||+..++..||.++||+ ..||..||.|.|.+..
T Consensus 12 ~~~LE~~F~~--~~~yp~~~~r~~LA~~l~Lt------erQVkvWFqNRR~k~k 57 (64)
T 1x2m_A 12 NAILEKVFTA--ITKHPDEKRLEGLSKQLDWD------VRSIQRWFRQRRNQEK 57 (64)
T ss_dssp HHHHHHHHHT--TCSSCCHHHHHHHHHHHCSC------HHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHH--cCCCcCHHHHHHHHHHhCCC------HHHHHHHHHHHHhccC
Confidence 6778777743 25999999999999998877 4699999999995443
No 78
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.59 E-value=0.12 Score=40.02 Aligned_cols=45 Identities=16% Similarity=0.192 Sum_probs=37.8
Q ss_pred CcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCccccccccccccccccccc
Q 019840 265 LPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGG 318 (335)
Q Consensus 265 LPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~Na 318 (335)
.|+..+++|++.|..| -...|++-..|+.+|+|+ -.||..||+-+
T Consensus 13 ~~p~~~e~L~~Yy~~h---k~L~EeDl~~L~~kskms------~qqvkdwFa~k 57 (70)
T 2ys9_A 13 PPPPDIQPLERYWAAH---QQLRETDIPQLSQASRLS------TQQVLDWFDSR 57 (70)
T ss_dssp CCCCCCHHHHHHHHHT---CCCCTTHHHHHHHHTTCC------HHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHh---cccchhhHHHHHHHhCCC------HHHHHHHHHhc
Confidence 3556789999999988 677899999999999876 46999999743
No 79
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=62.91 E-value=1.5 Score=29.90 Aligned_cols=10 Identities=10% Similarity=-0.064 Sum_probs=9.7
Q ss_pred cccccccccc
Q 019840 310 LVLNVVAGGR 319 (335)
Q Consensus 310 QV~NWF~NaR 319 (335)
||..||-|.|
T Consensus 2 QVkIWFQNRR 11 (37)
T 2nzz_A 2 QIKIWFQNRR 11 (37)
T ss_dssp CTTTTTTCSH
T ss_pred CceeccHHHH
Confidence 8999999999
No 80
>1xc0_A Pardaxin P-4, PA4; BEND-helix-BEND-helix motif, signaling protein; NMR {Synthetic} SCOP: j.6.1.1 PDB: 2kns_A
Probab=46.56 E-value=9.9 Score=24.90 Aligned_cols=18 Identities=39% Similarity=0.591 Sum_probs=15.2
Q ss_pred HHHHhcCCChHHHHHHHH
Q 019840 74 KAEIVGHPLYEQLLSAHV 91 (335)
Q Consensus 74 KAkI~sHPlYp~LL~Ayi 91 (335)
--||++.|||..||+|--
T Consensus 6 ipkiissplfktllsavg 23 (33)
T 1xc0_A 6 IPKIISSPLFKTLLSAVG 23 (33)
T ss_dssp HHHHTTTTTHHHHHHHHH
T ss_pred hhHHHccHHHHHHHHHHH
Confidence 458999999999998843
No 81
>2k6l_A Putative uncharacterized protein; xanthonomas axonopodis, RHH, structural proteomics, plasmid, hypothetical DNA binding protein; NMR {Xanthomonas axonopodis PV}
Probab=31.90 E-value=39 Score=24.58 Aligned_cols=34 Identities=15% Similarity=0.203 Sum_probs=24.7
Q ss_pred hhHHHHHHHHhhhhhhhhhHHHHHHhhccCCCCcchHHHHHHHHHHh
Q 019840 233 VRHELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWLS 279 (335)
Q Consensus 233 ~d~ELk~~L~~ky~~~l~~l~~e~~kkrKkgkLPKea~~iLk~W~~~ 279 (335)
.|+.|+.-+...|++ |||.|+|-.-+.|+.|+++
T Consensus 14 ~d~~lR~~l~~~~G~-------------rKGdlSkfVEeAvr~~lf~ 47 (51)
T 2k6l_A 14 VDQSVRMFIAAQGGG-------------RKGDLSRFIEDAVRAYLFE 47 (51)
T ss_dssp HHHHHHHHHHHHCSC-------------CSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC-------------ccccHHHHHHHHHHHHHHH
Confidence 356666665555443 4899999999999999774
No 82
>2w9j_A Signal recognition particle subunit SRP14; radiation-induced phasing, RNA-BI ribonucleoprotein, signaling P arsenic, ALU-domain; 2.60A {Schizosaccharomyces pombe}
Probab=25.91 E-value=35 Score=27.06 Aligned_cols=23 Identities=13% Similarity=0.133 Sum_probs=17.3
Q ss_pred CChhHHHHHHHHHHHHHHHHHHH
Q 019840 130 DDKELDQFMTHYVLLLYSFKEQL 152 (335)
Q Consensus 130 ~DPELDqFMeaYc~~L~kykeEL 152 (335)
.--+|+.|+.+|+.+|...-.-|
T Consensus 63 ~~~~l~~F~~~Y~~v~K~~M~~L 85 (91)
T 2w9j_A 63 ELDYFTDFFQSYAEVXKGQIVGL 85 (91)
T ss_dssp EGGGHHHHHHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHHHHHHhCCccc
Confidence 34799999999999997654333
No 83
>1e8o_B SRP14, signal recognition particle 14 kDa protein; ALU ribonucleoprotein particle, protein recognition of AN RNA U-turn, translational control; HET: GDP; 3.20A {Homo sapiens} SCOP: d.49.1.1 PDB: 1e8s_B 1ry1_D*
Probab=25.20 E-value=34 Score=27.75 Aligned_cols=19 Identities=32% Similarity=0.455 Sum_probs=16.3
Q ss_pred CChhHHHHHHHHHHHHHHH
Q 019840 130 DDKELDQFMTHYVLLLYSF 148 (335)
Q Consensus 130 ~DPELDqFMeaYc~~L~ky 148 (335)
.--+|+.|+.+|+.+|...
T Consensus 71 ~~~dl~~F~~~Y~~v~K~~ 89 (106)
T 1e8o_B 71 SSKEVNKFQMAYSNLLRAN 89 (106)
T ss_dssp ETTTHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhc
Confidence 4578999999999999764
No 84
>2i9o_A MHB8A peptide; beta-hairpin, alpha-helix, de novo protein; NMR {Synthetic}
Probab=23.00 E-value=64 Score=21.52 Aligned_cols=8 Identities=13% Similarity=0.356 Sum_probs=3.3
Q ss_pred CCCCCCcc
Q 019840 58 ASNDNGRA 65 (335)
Q Consensus 58 ~~~~~g~~ 65 (335)
+|||||+.
T Consensus 14 gggggggs 21 (37)
T 2i9o_A 14 GGGGGGGS 21 (37)
T ss_dssp SCCCCSCS
T ss_pred CCCCCcch
Confidence 44444433
Done!