BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019841
(335 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5ZM13|HYCCI_CHICK Hyccin OS=Gallus gallus GN=FAM126A PE=2 SV=1
Length = 515
Score = 33.9 bits (76), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 10/81 (12%)
Query: 196 KGYTLTSLEALKKEGSLNVQAGTAFVDFEFLEEV-------NSGKVSATTLNRFSCIALA 248
K TLT+ ++L K GS ++ T V + E+V N G VS T NRFS +L
Sbjct: 421 KRLTLTTSQSLPKPGSHSLARTTTTVFSKSFEQVSGVTVANNRGGVSGTEANRFSACSL- 479
Query: 249 GVATEYLLYGYAEGGLADINK 269
E L+YG L ++K
Sbjct: 480 --QEEKLIYGTERTDLPVLSK 498
>sp|Q9PB04|GRPE_XYLFA Protein GrpE OS=Xylella fastidiosa (strain 9a5c) GN=grpE PE=3 SV=2
Length = 172
Score = 33.5 bits (75), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 158 GSLVLDTIGHTFSQKYHNRVIQHEAGHFLIAYLVGILPKGYTLTS 202
G ++LD +G F+ ++H + Q E Y++ + KGY L
Sbjct: 114 GLMLLDPVGQLFNPEHHQAISQTEVTDVEPGYVIQVFQKGYLLNE 158
>sp|P31376|SWC3_YEAST SWR1-complex protein 3 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SWC3 PE=1 SV=2
Length = 625
Score = 32.7 bits (73), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 12/89 (13%)
Query: 43 VDEELSKGDERAALALVKDLQGKPGGLRCFGAARQIPQRLYTLDELKLNGIETR------ 96
D++L+K D + + K++ P F A P LYT +KL+GI R
Sbjct: 510 ADQKLNKEDAKPGSDVEKEVSFNP----LFEA--DCPTPLYTPMTMKLSGIHKRFNQIIR 563
Query: 97 SLLSPVDETLGSIERNLQLAAIAGGVSAW 125
+ +SP++E + +E+ LQ+ G + W
Sbjct: 564 NSVSPMEEVVKEMEKILQIGTRLSGYNLW 592
>sp|Q1MPZ9|FTHS_LAWIP Formate--tetrahydrofolate ligase OS=Lawsonia intracellularis
(strain PHE/MN1-00) GN=fhs PE=3 SV=1
Length = 591
Score = 32.7 bits (73), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 72/171 (42%), Gaps = 12/171 (7%)
Query: 118 IAGGVSAWNVFSFNPQQILYLSLALLFLWTVDSVSYNGGVGSLVLDTIGHTFSQKYH--- 174
+ G ++AW V + NP I + +F+ + G S++ D +G S+ YH
Sbjct: 266 VDGAMTAWMVEAINPNLIQSIEGQPIFVHAGPFANIAIGQSSVIADRLGLKLSE-YHVTE 324
Query: 175 ---NRVIQHEAGHFLIAYLVGILPKGYTL-TSLEALKKEGSLNVQAGTAFVDFEFLEEVN 230
I +E L + G+ P + T++ ALK G + + E+ EE N
Sbjct: 325 SGFGVDIGYEKFWNLKCHYSGLTPDAAVIVTTVRALKSHGGAPIPIPGRPLPKEYTEE-N 383
Query: 231 SGKV---SATTLNRFSCIALAGVATEYLLYGYAEGGLADINKLDALLKGLG 278
G V SA ++ + + +GV + + ++I K+ L + +G
Sbjct: 384 VGYVEVGSANLIHHINTVKKSGVPPVVCINAFTTDTPSEIAKIRQLCELVG 434
>sp|P46249|SECY_CYACA Protein translocase subunit SecY OS=Cyanidium caldarium GN=secY
PE=2 SV=2
Length = 410
Score = 32.0 bits (71), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 125 WNVFSFNPQQILYLSLALLFLWTVDSVSYNG---GVGSLVLDTIGHTFSQKYHNRVIQHE 181
WN++ ++ +S A+L +W D++SY G G ++ I F++ N++ H
Sbjct: 133 WNLYFIVQTTLILISGAMLVMWLADNISYKGIGTGASVIIFVNIASAFAKFLLNQLFVHS 192
>sp|Q10122|YSM1_CAEEL Uncharacterized WD repeat-containing protein F52C9.1
OS=Caenorhabditis elegans GN=F52C9.1 PE=4 SV=2
Length = 1336
Score = 32.0 bits (71), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 47/119 (39%), Gaps = 13/119 (10%)
Query: 178 IQHEAGHFLIAYLVGILPKGYTLTSLEALKKEGSLNVQAGTAFVDFEFLEEVNSGKVSAT 237
I H AY +G + G L SL A S+N G +F D SG +SA
Sbjct: 1028 IAHSPPSAFTAYSLGGMSSGNRLFSLSASSPVNSVNSLGGLSFCD--------SGSLSAV 1079
Query: 238 TLNRFSCIALAGVAT---EYLLYGYAEGGLADINKLDALLKGLGFTQKKADSQVR-WSL 292
R S A+ GV ++L G I KL A+ F +D V+ WS+
Sbjct: 1080 WCARVSA-AVCGVDNYRFDHLSLCNYTGHQEKIRKLAAISNENSFVSASSDKTVKLWSI 1137
>sp|Q9M1Z9|LRK58_ARATH Putative L-type lectin-domain containing receptor kinase V.8
OS=Arabidopsis thaliana GN=LECRK58 PE=3 SV=1
Length = 626
Score = 31.6 bits (70), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 14/79 (17%)
Query: 132 PQQILYLSLALLFLWTVDSVSYN-------------GGVGSLVL-DTIGHTFSQKYHNRV 177
P ++ L + L+ L+T+ S +YN +G +L +T H+ Q ++N
Sbjct: 2 PSELKVLHIVLVLLYTLSSSTYNSNGNWTLEGSAADNSIGDTILTNTKKHSCGQTFNNES 61
Query: 178 IQHEAGHFLIAYLVGILPK 196
I + F +L GI+P+
Sbjct: 62 IPIKDSSFSFHFLFGIVPE 80
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 116,515,499
Number of Sequences: 539616
Number of extensions: 4630548
Number of successful extensions: 12722
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 12718
Number of HSP's gapped (non-prelim): 11
length of query: 335
length of database: 191,569,459
effective HSP length: 118
effective length of query: 217
effective length of database: 127,894,771
effective search space: 27753165307
effective search space used: 27753165307
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)