Query 019841
Match_columns 335
No_of_seqs 189 out of 1040
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 07:53:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019841.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019841hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2di4_A Zinc protease, cell div 100.0 1.9E-34 6.4E-39 268.5 16.5 151 166-329 8-202 (238)
2 2ce7_A Cell division protein F 99.9 6.3E-26 2.2E-30 228.9 17.9 166 145-329 250-459 (476)
3 2dhr_A FTSH; AAA+ protein, hex 99.9 1.1E-24 3.8E-29 221.0 17.3 164 145-329 265-469 (499)
4 3b4r_A Putative zinc metallopr 95.9 0.0064 2.2E-07 55.5 4.7 57 176-257 50-106 (224)
5 3gpv_A Transcriptional regulat 63.0 18 0.00062 30.2 6.8 68 264-331 57-133 (148)
6 3gp4_A Transcriptional regulat 62.2 35 0.0012 28.3 8.4 66 264-329 43-117 (142)
7 1q08_A Zn(II)-responsive regul 59.5 27 0.00093 26.5 6.7 50 265-314 1-59 (99)
8 2jsd_A Matrix metalloproteinas 58.0 4.5 0.00015 33.9 2.1 15 173-187 107-121 (160)
9 2xs4_A Karilysin protease; hyd 55.7 4.4 0.00015 34.3 1.7 16 172-187 113-128 (167)
10 1hy7_A Stromelysin-1, MMP-3; m 53.0 6 0.00021 33.8 2.1 15 173-187 112-126 (173)
11 2ovx_A Matrix metalloproteinas 52.9 4.3 0.00015 34.3 1.1 15 173-187 110-124 (159)
12 1ich_A TNF-1, tumor necrosis f 52.3 35 0.0012 27.9 6.5 62 270-332 28-100 (112)
13 3cqb_A Probable protease HTPX 51.5 5.3 0.00018 31.7 1.4 21 168-188 77-97 (107)
14 1hv5_A Stromelysin 3; inhibiti 49.7 5.2 0.00018 33.9 1.1 16 172-187 111-126 (165)
15 1cge_A Fibroblast collagenase; 49.2 6.3 0.00022 33.6 1.6 15 173-187 110-124 (168)
16 1i76_A MMP-8;, neutrophil coll 46.8 7.7 0.00026 32.9 1.7 15 173-187 111-125 (163)
17 3ezq_A Tumor necrosis factor r 46.2 56 0.0019 26.7 6.8 48 268-315 21-78 (115)
18 1fad_A Protein (FADD protein); 46.2 92 0.0031 23.8 7.9 61 269-330 27-97 (99)
19 3oq9_A Tumor necrosis factor r 43.1 26 0.00088 27.2 4.1 48 268-315 13-70 (86)
20 2y6d_A Matrilysin; hydrolase; 40.6 11 0.00036 32.5 1.7 16 172-187 113-128 (174)
21 3ayu_A 72 kDa type IV collagen 40.0 11 0.00036 32.3 1.6 15 173-187 113-127 (167)
22 1y93_A Macrophage metalloelast 40.0 11 0.00036 31.9 1.6 15 173-187 107-121 (159)
23 1rm8_A MMP-16, matrix metallop 39.7 11 0.00038 31.9 1.7 16 172-187 115-130 (169)
24 2of5_A Death domain-containing 39.1 74 0.0025 25.6 6.5 46 270-316 38-94 (114)
25 1slm_A Stromelysin-1; hydrolas 38.4 11 0.00039 34.5 1.6 15 173-187 194-208 (255)
26 2cki_A Ulilysin; metalloprotea 37.3 11 0.00037 34.9 1.2 18 173-190 161-178 (262)
27 2o71_A Death domain-containing 36.9 95 0.0033 25.0 6.8 57 270-327 38-105 (115)
28 1r8e_A Multidrug-efflux transp 35.9 47 0.0016 29.5 5.3 66 264-329 47-115 (278)
29 1r8d_A Transcription activator 34.0 55 0.0019 25.4 4.8 48 265-312 44-93 (109)
30 1g9k_A Serralysin; beta jelly 33.3 18 0.00063 36.0 2.2 15 173-187 162-176 (463)
31 1sat_A Serratia protease; para 33.2 18 0.00063 36.0 2.2 16 172-187 168-183 (471)
32 1kap_P Alkaline protease; calc 32.0 20 0.00067 35.9 2.2 15 173-187 178-192 (479)
33 1q06_A Transcriptional regulat 31.5 1.8E+02 0.0063 23.4 7.8 21 265-285 42-64 (135)
34 1c7k_A NCNP, zinc endoprotease 31.3 22 0.00075 29.8 2.1 13 174-186 77-89 (132)
35 1k7i_A PROC, secreted protease 29.9 22 0.00077 35.5 2.2 16 172-187 180-195 (479)
36 3qao_A LMO0526 protein, MERR-l 28.1 69 0.0024 29.0 5.0 23 264-286 44-68 (249)
37 3hh0_A Transcriptional regulat 24.9 1.4E+02 0.0048 24.6 6.0 37 294-330 94-132 (146)
38 830c_A MMP-13, MMP-13; matrix 24.2 24 0.00083 30.2 1.1 15 173-187 112-126 (168)
39 3ma2_D Matrix metalloproteinas 23.1 26 0.00087 30.5 1.1 15 172-186 120-134 (181)
40 2gf5_A FADD protein; death dom 22.6 1.1E+02 0.0038 26.4 5.2 57 270-328 112-179 (191)
41 3ba0_A Macrophage metalloelast 22.6 32 0.0011 32.9 1.8 14 174-187 107-120 (365)
42 2vz4_A Tipal, HTH-type transcr 21.6 1E+02 0.0034 23.9 4.2 50 264-313 42-93 (108)
43 3c37_A Peptidase, M48 family; 20.7 30 0.001 31.2 1.0 22 170-191 96-117 (253)
44 1r42_A Angiotensin I convertin 20.5 36 0.0012 34.6 1.8 25 170-195 365-390 (615)
45 2of5_H Leucine-rich repeat and 20.4 2.6E+02 0.0088 22.2 6.6 47 270-316 27-84 (118)
No 1
>2di4_A Zinc protease, cell division protein FTSH homolog; metalloproteinase, hexamer-ring, hydrolase; 2.79A {Aquifex aeolicus} SCOP: a.269.1.1
Probab=100.00 E-value=1.9e-34 Score=268.49 Aligned_cols=151 Identities=15% Similarity=0.187 Sum_probs=119.9
Q ss_pred cCCCCHhHHHHHHHHHHhHHHHHHHhC--CCCceeEecchhHHhhhCccccccceeeecchhhhhhccccCCHHHHHHHH
Q 019841 166 GHTFSQKYHNRVIQHEAGHFLIAYLVG--ILPKGYTLTSLEALKKEGSLNVQAGTAFVDFEFLEEVNSGKVSATTLNRFS 243 (335)
Q Consensus 166 ~r~~s~~~r~RIA~HEAGHaLVAylLg--~PV~~~TI~p~eal~~~G~~~~~gG~~f~~~~~~~~l~~g~~s~~~L~r~~ 243 (335)
++.+|+++|++|||||||||||||+++ +||++|||+|| | ..+|+++..|+. +++.+|+++|.+.+
T Consensus 8 ~~~~s~~ek~~vAyHEAGHAlva~~l~~~~pV~KVTIiPR------G---~alG~t~~~P~e----d~~~~tk~~l~~~i 74 (238)
T 2di4_A 8 HMTISPKEKEKIAIHEAGHALMGLVSDDDDKVHKISIIPR------G---MALGVTQQLPIE----DKHIYDKKDLYNKI 74 (238)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHHHHCSSCCCCCCEECC-----------------------------CCCCBHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCCCceeEEEEeec------C---CcceEEEeCCcc----cccccCHHHHHHHH
Confidence 356799999999999999999999998 79999999998 5 356777655442 46788999999999
Q ss_pred HHHhhHHHHHHHHh--CCc-cchhhHHHHHHHHHHh----cCCCH-----------------------------HHHHHH
Q 019841 244 CIALAGVATEYLLY--GYA-EGGLADINKLDALLKG----LGFTQ-----------------------------KKADSQ 287 (335)
Q Consensus 244 ~VlLAGrAAE~Lvy--G~a-~Gg~~Dl~~at~i~~~----lG~s~-----------------------------~~~d~e 287 (335)
+|+|||||||+++| |++ +|++||++++|++++. +|||. ..+|.+
T Consensus 75 ~v~LgGRaAEelifG~g~vttGA~~Dl~~AT~iAr~MV~~~GMs~~lG~v~~~~~~~~flg~~~~~~~~Se~ta~~iD~E 154 (238)
T 2di4_A 75 LVLLGGRAAEEVFFGKDGITTGAENDLQRATDLAYRMVSMWGMSDKVGPIAIRRVANPFLGGMTTAVDTSPDLLREIDEE 154 (238)
T ss_dssp HHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHTSCCCTTTCSCCCCC----------CCCSCCHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHhCCCCcccChHhHHHHHHHHHHHHHHHhCCCCCCCceeecCCccccccccccccccCHHHHHHHHHH
Confidence 99999999999999 664 6999999999998764 67764 135666
Q ss_pred HH----HHHHHHHHHHHHcHHHHHHHHHHHHcccch--HHHHHHHHhh
Q 019841 288 VR----WSLLNTVLLLRRHKGARAKLAEAMTMGKSL--GSCIDIIEDN 329 (335)
Q Consensus 288 vR----~A~~~A~~LLr~hr~aleaLaeaLle~esl--~~Ci~~Ie~~ 329 (335)
+| +||.+|++||++||+.+++||++|+++||| ++|.++|+..
T Consensus 155 v~~il~~ay~~a~~iL~~nr~~L~~lA~~Lle~EtL~~~ei~~il~~~ 202 (238)
T 2di4_A 155 VKRIITEQYEKAKAIVEEYKEPLKAVVKKLLEKETITCEEFVEVFKLY 202 (238)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCHHHHHHHHccC
Confidence 65 899999999999999999999999999999 8888998764
No 2
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.94 E-value=6.3e-26 Score=228.86 Aligned_cols=166 Identities=19% Similarity=0.216 Sum_probs=122.6
Q ss_pred HHHHHHhhhcCCCCccccccccCCCCHhHHHHHHHHHHhHHHHHHHhC--CCCceeEecchhHHhhhCccccccceeeec
Q 019841 145 LWTVDSVSYNGGVGSLVLDTIGHTFSQKYHNRVIQHEAGHFLIAYLVG--ILPKGYTLTSLEALKKEGSLNVQAGTAFVD 222 (335)
Q Consensus 145 l~aiD~v~lgg~~~~llld~l~r~~s~~~r~RIA~HEAGHaLVAylLg--~PV~~~TI~p~eal~~~G~~~~~gG~~f~~ 222 (335)
..++|++..|.+... ..++++++++++|||+||++++++++ .|++++||+|+ | ...+|+++..
T Consensus 250 ~~al~~v~~~~~~~~-------~~~~~~e~~~~a~~e~G~a~~~~~l~~~~~~~~~~i~pr------g--~~alg~~~~~ 314 (476)
T 2ce7_A 250 EEAIDRVIAGPARKS-------LLISPAEKRIIAYHEAGHAVVSTVVPNGEPVHRISIIPR------G--YKALGYTLHL 314 (476)
T ss_dssp HHHHHHHC---------------CCCHHHHHHHHHHHHHHHHHHHHSTTCCCCCEEECC---------------------
T ss_pred HHHHHHHhcCccccc-------hhhhcchhhhhHHHHhhhHHHhhccCCccccceeeeecC------c--ccccceEEEc
Confidence 456778777654322 34689999999999999999999996 79999999997 4 1356766655
Q ss_pred chhhhhhccccCCHHHHHHHHHHHhhHHHHHHHHhCCcc-chhhHHHHHHHHHHh----cCCCH----------------
Q 019841 223 FEFLEEVNSGKVSATTLNRFSCIALAGVATEYLLYGYAE-GGLADINKLDALLKG----LGFTQ---------------- 281 (335)
Q Consensus 223 ~~~~~~l~~g~~s~~~L~r~~~VlLAGrAAE~LvyG~a~-Gg~~Dl~~at~i~~~----lG~s~---------------- 281 (335)
|+. +.+.+|+++|.++++|+|||||||+++||+++ |++||++++|++++. +|||.
T Consensus 315 p~~----~~~~~~~~~l~~~i~~~l~Gr~ae~~~~g~~~~ga~~Dl~~at~~a~~mv~~~gm~~~~g~~~~~~~~~~~~~ 390 (476)
T 2ce7_A 315 PEE----DKYLVSRNELLDKLTALLGGRAAEEVVFGDVTSGAANDIERATEIARNMVCQLGMSEELGPLAWGKEEQEVFL 390 (476)
T ss_dssp --------CCSCBHHHHHHHHHHHTHHHHHHHHHHSSCCGGGHHHHHHHHHHHHHHHHTSCCCTTTCSCCCCC-------
T ss_pred Ccc----cccccCHHHHHHHHHHHHhHHHHHhhhcCCCCcccHHHHHHHHHHHHHHHHHhCCCCcCCceeecCCCccccc
Confidence 432 45778999999999999999999999999974 999999999999764 57653
Q ss_pred ---------------HHHHHHHH----HHHHHHHHHHHHcHHHHHHHHHHHHcccch--HHHHHHHHhh
Q 019841 282 ---------------KKADSQVR----WSLLNTVLLLRRHKGARAKLAEAMTMGKSL--GSCIDIIEDN 329 (335)
Q Consensus 282 ---------------~~~d~evR----~A~~~A~~LLr~hr~aleaLaeaLle~esl--~~Ci~~Ie~~ 329 (335)
..+|++++ .||.+|++||++|++.++++|++|+++||| +++.++++..
T Consensus 391 ~~~~~~~~~~s~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~l~~~a~~l~~~e~l~~~~~~~~~~~~ 459 (476)
T 2ce7_A 391 GKEITRLRNYSEEVASKIDEEVKKIVTNCYERAKEIIRKYRKQLDNIVEILLEKETIEGDELRRILSEE 459 (476)
T ss_dssp ------CCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEEEHHHHHHHTC--
T ss_pred cccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCeeCHHHHHHHhccc
Confidence 13556655 799999999999999999999999999999 7777877653
No 3
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.92 E-value=1.1e-24 Score=220.96 Aligned_cols=164 Identities=22% Similarity=0.195 Sum_probs=135.4
Q ss_pred HHHHHHhhhcCCCCccccccccCCCCHhHHHHHHHHHHhHHHHHHHhC--CCCceeEecchhHHhhhCccccccceeeec
Q 019841 145 LWTVDSVSYNGGVGSLVLDTIGHTFSQKYHNRVIQHEAGHFLIAYLVG--ILPKGYTLTSLEALKKEGSLNVQAGTAFVD 222 (335)
Q Consensus 145 l~aiD~v~lgg~~~~llld~l~r~~s~~~r~RIA~HEAGHaLVAylLg--~PV~~~TI~p~eal~~~G~~~~~gG~~f~~ 222 (335)
-.++|++..|....+ +.++++++++++|||+||++++|+++ .||+++||+|+ | ...|+++
T Consensus 265 ~~al~~v~~~~~~~~-------~~~~~~e~~~~a~~e~g~av~~~~l~~~~~v~~~~i~pr------~---~~~g~~~-- 326 (499)
T 2dhr_A 265 EEAADRVMMLPAKKS-------LVLSPRDRRITAYHEAGHALAAHFLEHADGVHKVTIVPR------G---RALGFMM-- 326 (499)
T ss_dssp HHHHHHHTTCSSSSC-------CCCCTTHHHHHHHHHHHHHHHHCCSSSCCCCCCEESCCS------S---CTTCSSH--
T ss_pred HHHHHHHhccccccc-------chhhHHHHhhhHHHHHHHHHHHhhcCCCCeeeEEEeecC------C---CcCcccc--
Confidence 346788888765432 34689999999999999999999986 68999999997 4 3556665
Q ss_pred chhhhhhccccCCHHHHHHHHHHHhhHHHHHHHHhCCc-cchhhHHHHHHHHHHh----cCCCH----------------
Q 019841 223 FEFLEEVNSGKVSATTLNRFSCIALAGVATEYLLYGYA-EGGLADINKLDALLKG----LGFTQ---------------- 281 (335)
Q Consensus 223 ~~~~~~l~~g~~s~~~L~r~~~VlLAGrAAE~LvyG~a-~Gg~~Dl~~at~i~~~----lG~s~---------------- 281 (335)
|. +.+.+.+|+.++...++++|||||||+++||++ +|++||++++|++++. +|||.
T Consensus 327 p~---q~~~~~~t~~~l~~~i~~~lgGr~ae~~~~g~~~~ga~~Dl~~at~~a~~mv~~~gm~~~~g~~~~~~~~~~~~~ 403 (499)
T 2dhr_A 327 PR---REDMLHWSRKRLLDQIAVALAGRAAEEIVFDDVTTGAENDFRQATELARRMITEWGMHPEFGPVAYAVREDTYLG 403 (499)
T ss_dssp HH---HTTCCCCCHHHHHHHHHHHHHHHHHHHHHSCSCCBCCCHHHHHHHHHHHHHHTTSCCCSSSCSCCCCCCCCCSSC
T ss_pred cc---hhhhhccCHHHHHHHHHHHhhhHhHHHhhhcccCcccHHHHHHHHHHHHHHHHHhCCCCCCCceeecCCCccccc
Confidence 32 134567899999999999999999999999997 5999999999999874 56643
Q ss_pred ------------HHHHHHHH----HHHHHHHHHHHHcHHHHHHHHHHHHcccch--HHHHHHHHhh
Q 019841 282 ------------KKADSQVR----WSLLNTVLLLRRHKGARAKLAEAMTMGKSL--GSCIDIIEDN 329 (335)
Q Consensus 282 ------------~~~d~evR----~A~~~A~~LLr~hr~aleaLaeaLle~esl--~~Ci~~Ie~~ 329 (335)
..+|.+++ +||.+|++||++|++.+++||++|+++||| +++.++++..
T Consensus 404 ~~~~~~~s~~~~~~i~~~v~~~~~~~~~~~~~~l~~~~~~l~~~a~~l~~~e~l~~~~~~~~~~~~ 469 (499)
T 2dhr_A 404 GYDVRQYSEETAKRIDEAVRRLIEEQYQRVKALLLEKREVLERVAETLLERETLTAEEFQRVVEGL 469 (499)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEECHHHHHHHHTTC
T ss_pred cccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCHHHHHHHhccC
Confidence 13566655 799999999999999999999999999999 7888888764
No 4
>3b4r_A Putative zinc metalloprotease MJ0392; intramembrane protease, CBS domain, hydrolase, metal-binding, transmembrane; 3.30A {Methanocaldococcus jannaschii}
Probab=95.94 E-value=0.0064 Score=55.52 Aligned_cols=57 Identities=25% Similarity=0.383 Sum_probs=41.4
Q ss_pred HHHHHHHhHHHHHHHhCCCCceeEecchhHHhhhCccccccceeeecchhhhhhccccCCHHHHHHHHHHHhhHHHHHHH
Q 019841 176 RVIQHEAGHFLIAYLVGILPKGYTLTSLEALKKEGSLNVQAGTAFVDFEFLEEVNSGKVSATTLNRFSCIALAGVATEYL 255 (335)
Q Consensus 176 RIA~HEAGHaLVAylLg~PV~~~TI~p~eal~~~G~~~~~gG~~f~~~~~~~~l~~g~~s~~~L~r~~~VlLAGrAAE~L 255 (335)
-+..||.||+++|+..|+++.++++.|. | |+. ..+ + .++ .+...|.+||-.+.-+
T Consensus 50 ~v~~HElgH~~~A~~~G~~~~~i~l~p~------G------g~~--~~~--~------~~~---~~~~~ValAGPl~nl~ 104 (224)
T 3b4r_A 50 SVVLHELGHSYVAKKYGVKIEKILLLPI------G------GVA--MMD--K------IPK---EGELRIGIAGPLVSFI 104 (224)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCCEEECSS------S------CBC--CCC--C------CCS---SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCccccEEEEEe------e------eEE--Ecc--c------CCc---cceeeeeeeHHHHHHH
Confidence 4778999999999999999999999986 4 322 111 1 111 3456788999988865
Q ss_pred Hh
Q 019841 256 LY 257 (335)
Q Consensus 256 vy 257 (335)
.-
T Consensus 105 la 106 (224)
T 3b4r_A 105 IG 106 (224)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 5
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=63.01 E-value=18 Score=30.18 Aligned_cols=68 Identities=21% Similarity=0.392 Sum_probs=45.2
Q ss_pred hhHHHHHHHH--HHhcCCCHHHHHHHHHH------HHHHHHHHHHHcHHHHHHHHHHHHcc-cchHHHHHHHHhhhc
Q 019841 264 LADINKLDAL--LKGLGFTQKKADSQVRW------SLLNTVLLLRRHKGARAKLAEAMTMG-KSLGSCIDIIEDNID 331 (335)
Q Consensus 264 ~~Dl~~at~i--~~~lG~s~~~~d~evR~------A~~~A~~LLr~hr~aleaLaeaLle~-esl~~Ci~~Ie~~~~ 331 (335)
.+|+.++..| ++.+|||-++|..-+.. ...+...+|++++..+++-.+.|.+. +.|...++.+++.+.
T Consensus 57 ~~dl~~l~~I~~lr~~G~sL~eIk~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~ 133 (148)
T 3gpv_A 57 EEALKYLEMILCLKNTGMPIQKIKQFIDWSMEGDSTILHRLKLMKQQEANVLQLIQDTEKNLKKIQQKIAKYEDEIS 133 (148)
T ss_dssp HHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888776 56789998877765442 34466788888888888777777764 556777776666553
No 6
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=62.19 E-value=35 Score=28.27 Aligned_cols=66 Identities=14% Similarity=0.133 Sum_probs=40.1
Q ss_pred hhHHHHHHHH--HHhcCCCHHHHHHHHHH------HHHHHHHHHHHcHHHHHHHHHHHHcc-cchHHHHHHHHhh
Q 019841 264 LADINKLDAL--LKGLGFTQKKADSQVRW------SLLNTVLLLRRHKGARAKLAEAMTMG-KSLGSCIDIIEDN 329 (335)
Q Consensus 264 ~~Dl~~at~i--~~~lG~s~~~~d~evR~------A~~~A~~LLr~hr~aleaLaeaLle~-esl~~Ci~~Ie~~ 329 (335)
.+|+.++..| ++.+|||-+.|..-+.. ...+..++|+++...+++-.+.|.+. +.|...++.+++.
T Consensus 43 ~~dl~~l~~I~~lr~~G~sL~eIk~~l~~~~~~~~~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~ 117 (142)
T 3gp4_A 43 AEDLRWILFTRQMRRAGLSIEALIDYLALFREGEHTLEARAELLKKQRIELKNRIDVMQEALDRLDFKIDNYDTH 117 (142)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577776665 45688887766554331 23455677777777777666666553 4455555555543
No 7
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=59.54 E-value=27 Score=26.45 Aligned_cols=50 Identities=10% Similarity=0.200 Sum_probs=30.7
Q ss_pred hHHHHHHHH--HHhcCCCHHHHHHHHHH-------HHHHHHHHHHHcHHHHHHHHHHHH
Q 019841 265 ADINKLDAL--LKGLGFTQKKADSQVRW-------SLLNTVLLLRRHKGARAKLAEAMT 314 (335)
Q Consensus 265 ~Dl~~at~i--~~~lG~s~~~~d~evR~-------A~~~A~~LLr~hr~aleaLaeaLl 314 (335)
+|+.++..| ++.+|||-++|..-+.. .......+|++|+..++.=-+.|.
T Consensus 1 ~dl~rL~~I~~lr~lGfsL~eIk~~l~~~~~~~~~~~~~~~~~L~~~~~~l~~~i~~L~ 59 (99)
T 1q08_A 1 SDLQRLKFIRHARQLGFSLESIRELLSIRIDPEHHTCQESKGIVQERLQEVEARIAELQ 59 (99)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHCGGGCBHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367777776 57799998877654431 123455666666666555444443
No 8
>2jsd_A Matrix metalloproteinase-20; MMP-NNGH, structural genomics, structural proteomics in europe, spine, spine-2, spine2-complexes, hydrolase; HET: NGH; NMR {Homo sapiens}
Probab=58.03 E-value=4.5 Score=33.86 Aligned_cols=15 Identities=40% Similarity=0.288 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhHHHH
Q 019841 173 YHNRVIQHEAGHFLI 187 (335)
Q Consensus 173 ~r~RIA~HEAGHaLV 187 (335)
+...|+.||-||+|-
T Consensus 107 ~~~~v~~HEiGHaLG 121 (160)
T 2jsd_A 107 NLFTVAAHEFGHALG 121 (160)
T ss_dssp EHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHhHhhhc
Confidence 467899999999974
No 9
>2xs4_A Karilysin protease; hydrolase, bacterial MMP, virulence factor, metalloprotease, dependent, peptidase; 1.70A {Tannerella forsythia} PDB: 2xs3_A
Probab=55.72 E-value=4.4 Score=34.35 Aligned_cols=16 Identities=38% Similarity=0.324 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHhHHHH
Q 019841 172 KYHNRVIQHEAGHFLI 187 (335)
Q Consensus 172 ~~r~RIA~HEAGHaLV 187 (335)
.+...|+.||-||+|-
T Consensus 113 ~~~~~v~~HEiGHaLG 128 (167)
T 2xs4_A 113 IDLITVAAHEIGHLLG 128 (167)
T ss_dssp EEHHHHHHHHHHHHHT
T ss_pred cchhhhHHHHHHHhhc
Confidence 3566899999999863
No 10
>1hy7_A Stromelysin-1, MMP-3; mixed alpha beta structure, zinc protease, inhibited, hydrol; HET: MBS; 1.50A {Homo sapiens} SCOP: d.92.1.11 PDB: 1biw_A* 1bm6_A* 1bqo_A* 1b3d_A* 1cqr_A 1d5j_A* 1d7x_A* 1d8f_A* 1d8m_A* 1g05_A* 1g49_A* 1c3i_A* 1sln_A* 1uea_A 2srt_A* 1ums_A* 1umt_A* 2d1o_A* 3oho_A* 1ciz_A* ...
Probab=53.04 E-value=6 Score=33.80 Aligned_cols=15 Identities=40% Similarity=0.266 Sum_probs=12.4
Q ss_pred HHHHHHHHHHhHHHH
Q 019841 173 YHNRVIQHEAGHFLI 187 (335)
Q Consensus 173 ~r~RIA~HEAGHaLV 187 (335)
....|+.||-||+|-
T Consensus 112 ~~~~v~~HEiGHaLG 126 (173)
T 1hy7_A 112 NLFLVAAHEIGHSLG 126 (173)
T ss_dssp EHHHHHHHHHHHHHT
T ss_pred hhhhhHHHHHHHhhc
Confidence 456899999999874
No 11
>2ovx_A Matrix metalloproteinase-9 (EC 3.4.24.35) (MMP-9) type IV collagenase) (92 kDa gelatinase)...; S1-prime pocket, hydrolase-hydrola inhibitor complex; HET: 4MR; 2.00A {Homo sapiens} SCOP: d.92.1.11 PDB: 2ovz_A* 2ow0_A* 2ow1_A* 2ow2_A* 1gkd_A* 1gkc_A*
Probab=52.94 E-value=4.3 Score=34.35 Aligned_cols=15 Identities=33% Similarity=0.191 Sum_probs=12.3
Q ss_pred HHHHHHHHHHhHHHH
Q 019841 173 YHNRVIQHEAGHFLI 187 (335)
Q Consensus 173 ~r~RIA~HEAGHaLV 187 (335)
+...|+.||-||+|-
T Consensus 110 ~~~~va~HEiGHaLG 124 (159)
T 2ovx_A 110 SLFLVAAHQFGHALG 124 (159)
T ss_dssp EHHHHHHHHHHHHTT
T ss_pred chhhhhhhhhhhhhc
Confidence 456899999999863
No 12
>1ich_A TNF-1, tumor necrosis factor receptor-1; death domain, apoptosis; NMR {Homo sapiens} SCOP: a.77.1.2
Probab=52.32 E-value=35 Score=27.86 Aligned_cols=62 Identities=18% Similarity=0.272 Sum_probs=43.7
Q ss_pred HHHHHHhcCCCHHHHHHHH----HHHHHHHHHHHHHcH-------HHHHHHHHHHHcccchHHHHHHHHhhhcc
Q 019841 270 LDALLKGLGFTQKKADSQV----RWSLLNTVLLLRRHK-------GARAKLAEAMTMGKSLGSCIDIIEDNIDD 332 (335)
Q Consensus 270 at~i~~~lG~s~~~~d~ev----R~A~~~A~~LLr~hr-------~aleaLaeaLle~esl~~Ci~~Ie~~~~~ 332 (335)
..++++.+|+|+.+||.-. |...++.+++|+.-+ ..++.|.++|. +--+..|.+.|++.+..
T Consensus 28 WK~~aRkLGLse~~Id~Ie~~~~r~l~Eq~yqmLr~W~~~~G~~~Atv~~L~~aLr-~~~l~~~ae~Ie~~l~~ 100 (112)
T 1ich_A 28 WKEFVKRLGLSDHEIDRLELQNGRCLREAQYSMLATWRRRTPRREATLELLGRVLR-DMDLLGCLEDIEEALCG 100 (112)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHCCSCHHHHHHHHHHHHHHHSCCSSCHHHHHHHHHH-HTTCHHHHHHHHHHHC-
T ss_pred HHHHHHHcCCCHHHHHHHHHHCcCChHHHHHHHHHHHHHhcCCCCCcHHHHHHHHH-HhccHHHHHHHHHHHhc
Confidence 5567788999999888522 235667777775432 25899999998 45577788888887743
No 13
>3cqb_A Probable protease HTPX homolog; heat shock protein HTPX domain, PSI-2, protein structure INI structural genomics; HET: MSE; 1.86A {Vibrio parahaemolyticus rimd 2210633}
Probab=51.46 E-value=5.3 Score=31.71 Aligned_cols=21 Identities=19% Similarity=0.351 Sum_probs=17.6
Q ss_pred CCCHhHHHHHHHHHHhHHHHH
Q 019841 168 TFSQKYHNRVIQHEAGHFLIA 188 (335)
Q Consensus 168 ~~s~~~r~RIA~HEAGHaLVA 188 (335)
.+++++..-|.-||-||..-.
T Consensus 77 ~l~~~El~aVlaHElgH~~~~ 97 (107)
T 3cqb_A 77 NMTRDEAEAVLAHEVSHIANG 97 (107)
T ss_dssp HSCHHHHHHHHHHHHHHHHTT
T ss_pred hCCHHHHHHHHHHHHHHHHCC
Confidence 348999999999999998643
No 14
>1hv5_A Stromelysin 3; inhibition, phosphinic inhibitor, hydrolase; HET: CPS RXP; 2.60A {Mus musculus} SCOP: d.92.1.11
Probab=49.69 E-value=5.2 Score=33.93 Aligned_cols=16 Identities=38% Similarity=0.331 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHhHHHH
Q 019841 172 KYHNRVIQHEAGHFLI 187 (335)
Q Consensus 172 ~~r~RIA~HEAGHaLV 187 (335)
.+...|+.||-||+|-
T Consensus 111 ~~~~~v~~HEiGHaLG 126 (165)
T 1hv5_A 111 TDLLQVAAHEFGHVLG 126 (165)
T ss_dssp EEHHHHHHHHHHHHTT
T ss_pred chhhhhHHHHhHhhhC
Confidence 3557899999999863
No 15
>1cge_A Fibroblast collagenase; hydrolase (metalloprotease); 1.90A {Homo sapiens} SCOP: d.92.1.11 PDB: 2j0t_A 1ayk_A 1hfc_A* 2ayk_A 2tcl_A* 3ayk_A* 4ayk_A* 1cgl_A* 1cgf_A 966c_A* 3shi_A
Probab=49.19 E-value=6.3 Score=33.58 Aligned_cols=15 Identities=47% Similarity=0.505 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhHHHH
Q 019841 173 YHNRVIQHEAGHFLI 187 (335)
Q Consensus 173 ~r~RIA~HEAGHaLV 187 (335)
....|+.||-||+|-
T Consensus 110 ~~~~v~~HEiGHaLG 124 (168)
T 1cge_A 110 NLHRVAAHELGHSLG 124 (168)
T ss_dssp BHHHHHHHHHHHHTT
T ss_pred chhhhhhhHhHhhhc
Confidence 356899999999863
No 16
>1i76_A MMP-8;, neutrophil collagenase; hydrolase, complex (metalloprotease/inhibitor); HET: BSI; 1.20A {Homo sapiens} SCOP: d.92.1.11 PDB: 1i73_A* 1jao_A* 1jap_A 1jaq_A* 1jj9_A* 1mmb_A* 1zp5_A* 1zs0_A* 1zvx_A* 3dng_A* 3dpe_A* 3dpf_A* 1kbc_A* 1jan_A* 1bzs_A* 1mnc_A* 2oy2_A 1a86_A* 1jh1_A* 1a85_A ...
Probab=46.75 E-value=7.7 Score=32.92 Aligned_cols=15 Identities=40% Similarity=0.233 Sum_probs=12.3
Q ss_pred HHHHHHHHHHhHHHH
Q 019841 173 YHNRVIQHEAGHFLI 187 (335)
Q Consensus 173 ~r~RIA~HEAGHaLV 187 (335)
+...|+.||-||+|-
T Consensus 111 ~~~~v~~HE~GHalG 125 (163)
T 1i76_A 111 NLFLVAAHEFGHSLG 125 (163)
T ss_dssp BHHHHHHHHHHHHHT
T ss_pred hhhhhhHHHhhhhhc
Confidence 456899999999864
No 17
>3ezq_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} SCOP: a.77.1.2 PDB: 1ddf_A
Probab=46.20 E-value=56 Score=26.74 Aligned_cols=48 Identities=21% Similarity=0.257 Sum_probs=36.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHH----HHHHHHHHHHHHHc------HHHHHHHHHHHHc
Q 019841 268 NKLDALLKGLGFTQKKADSQV----RWSLLNTVLLLRRH------KGARAKLAEAMTM 315 (335)
Q Consensus 268 ~~at~i~~~lG~s~~~~d~ev----R~A~~~A~~LLr~h------r~aleaLaeaLle 315 (335)
.+..++++.+|+|+.+||.-. |...++.+++|+.. +.+++.|.++|..
T Consensus 21 ~~wK~laR~LGlse~~Id~I~~d~~~d~~Eq~~qlLr~W~~~~G~~aa~~~Li~aLr~ 78 (115)
T 3ezq_A 21 SQVKGFVRKNGVNEAKIDEIKNDNVQDTAEQKVQLLRNWHQLHGKKEAYDTLIKDLKK 78 (115)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHCSSCHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHhhHHHHHHcCCCChHHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 457788899999999888532 23668888888765 4588889998877
No 18
>1fad_A Protein (FADD protein); apoptosis, death domain; NMR {Mus musculus} SCOP: a.77.1.2
Probab=46.18 E-value=92 Score=23.76 Aligned_cols=61 Identities=20% Similarity=0.210 Sum_probs=39.7
Q ss_pred HHHHHHHhcCCCHHHHHH-HHH---HHHHHHHHHHHHcH------HHHHHHHHHHHcccchHHHHHHHHhhh
Q 019841 269 KLDALLKGLGFTQKKADS-QVR---WSLLNTVLLLRRHK------GARAKLAEAMTMGKSLGSCIDIIEDNI 330 (335)
Q Consensus 269 ~at~i~~~lG~s~~~~d~-evR---~A~~~A~~LLr~hr------~aleaLaeaLle~esl~~Ci~~Ie~~~ 330 (335)
.-.++++.+||+...|+. +.+ .-..++.++|+.-+ ..++.|.++|.+-. ..++.+.|++.+
T Consensus 27 ~Wk~Lar~Lg~~~~~I~~I~~~~~~d~~eq~~~mL~~W~~~~g~~At~~~L~~AL~~~~-~~~iae~i~~~~ 97 (99)
T 1fad_A 27 DWKRLARELKVSEAKMDGIEEKYPRSLSERVRESLKVWKNAEKKNASVAGLVKALRTCR-LNLVADLVEEAQ 97 (99)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHGGGGSHHHHHHHHHHHT-CHHHHHHHHHHH
T ss_pred hHHHHHHHcCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHCC-cHHHHHHHHHHH
Confidence 356677889999988775 111 24567777776543 45788888888744 455555555544
No 19
>3oq9_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS; 6.80A {Mus musculus}
Probab=43.13 E-value=26 Score=27.24 Aligned_cols=48 Identities=15% Similarity=0.100 Sum_probs=35.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHH----HHHHHHHHHHHHHcH------HHHHHHHHHHHc
Q 019841 268 NKLDALLKGLGFTQKKADSQV----RWSLLNTVLLLRRHK------GARAKLAEAMTM 315 (335)
Q Consensus 268 ~~at~i~~~lG~s~~~~d~ev----R~A~~~A~~LLr~hr------~aleaLaeaLle 315 (335)
.+..++++.+|+|+.+||.-. |...++.+++|+..+ .+++.|.++|..
T Consensus 13 ~~wK~~~R~LGlse~~Id~I~~~~~~d~~Eq~~qmL~~W~~~~g~~a~~~~Li~~Lr~ 70 (86)
T 3oq9_A 13 QEAKKFARENNIKEGKIDEIMHDSIQDTAEQKVQLLLCWYQSHGKSDAYQDLIKGLKK 70 (86)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHTCTTCCTTHHHHHHHHHHHHSCSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHhHHHHHHHhCCCChHHHHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence 357788999999999888522 234577777777654 577888888876
No 20
>2y6d_A Matrilysin; hydrolase; HET: TQJ; 1.60A {Homo sapiens} PDB: 2ddy_A* 1mmq_A* 1mmp_A* 1mmr_A* 2y6c_A*
Probab=40.60 E-value=11 Score=32.49 Aligned_cols=16 Identities=31% Similarity=0.181 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHhHHHH
Q 019841 172 KYHNRVIQHEAGHFLI 187 (335)
Q Consensus 172 ~~r~RIA~HEAGHaLV 187 (335)
.+...|+.||-||+|-
T Consensus 113 ~~~~~~~~HE~gH~lG 128 (174)
T 2y6d_A 113 INFLYAATHELGHSLG 128 (174)
T ss_dssp EEHHHHHHHHHHHHHT
T ss_pred ceeeehhhHHhHhhhc
Confidence 3466899999999863
No 21
>3ayu_A 72 kDa type IV collagenase; protease, hydrolase-hydrolase inhibitor complex; 2.00A {Homo sapiens} PDB: 1qib_A 1hov_A*
Probab=40.05 E-value=11 Score=32.25 Aligned_cols=15 Identities=27% Similarity=0.126 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhHHHH
Q 019841 173 YHNRVIQHEAGHFLI 187 (335)
Q Consensus 173 ~r~RIA~HEAGHaLV 187 (335)
....|+.||-||+|-
T Consensus 113 ~~~~~~~HE~gH~lG 127 (167)
T 3ayu_A 113 SLFLVAAHAFGHAMG 127 (167)
T ss_dssp EHHHHHHHHHHHHTT
T ss_pred cceeehhhhhHHhcc
Confidence 356899999999863
No 22
>1y93_A Macrophage metalloelastase; matrix metalloproteinase, MMP12, complex (elastase inhibitor), acetohydroxamic acid, hydrola; 1.03A {Homo sapiens} SCOP: d.92.1.11 PDB: 1rmz_A 1ycm_A* 1z3j_A* 2hu6_A* 2oxu_A 2oxw_A 2oxz_A 3lik_A* 3lil_A* 3lir_A* 3ljg_A* 1os9_A 1os2_A 3f17_A* 3ehy_A* 3ehx_A* 3f15_A* 3f16_A* 3f18_A* 3f19_A* ...
Probab=40.03 E-value=11 Score=31.93 Aligned_cols=15 Identities=33% Similarity=0.162 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhHHHH
Q 019841 173 YHNRVIQHEAGHFLI 187 (335)
Q Consensus 173 ~r~RIA~HEAGHaLV 187 (335)
+...|+.||-||+|-
T Consensus 107 ~~~~~~~HE~GH~lG 121 (159)
T 1y93_A 107 NLFLTAVHEIGHSLG 121 (159)
T ss_dssp EHHHHHHHHHHHHTT
T ss_pred hhhhhhhhhhhhhhc
Confidence 467899999999863
No 23
>1rm8_A MMP-16, matrix metalloproteinase-16, MT3-MMP; membrane type - matrix metalloproteinase, batimastat, hydroxamate inhibitor, protease, hydrolase; HET: BAT; 1.80A {Homo sapiens} SCOP: d.92.1.11
Probab=39.75 E-value=11 Score=31.92 Aligned_cols=16 Identities=38% Similarity=0.212 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHhHHHH
Q 019841 172 KYHNRVIQHEAGHFLI 187 (335)
Q Consensus 172 ~~r~RIA~HEAGHaLV 187 (335)
.+...++.||-||+|-
T Consensus 115 ~~~~~~~~he~gh~lg 130 (169)
T 1rm8_A 115 NDLFLVAVHELGHALG 130 (169)
T ss_dssp EEHHHHHHHHHHHHHT
T ss_pred ceeeeehhhhhhhhcC
Confidence 4567899999999863
No 24
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=39.11 E-value=74 Score=25.63 Aligned_cols=46 Identities=13% Similarity=0.151 Sum_probs=32.6
Q ss_pred HHHHHHhcCCCHHHHHHHHH-----HHHHHHHHHHHHcH------HHHHHHHHHHHcc
Q 019841 270 LDALLKGLGFTQKKADSQVR-----WSLLNTVLLLRRHK------GARAKLAEAMTMG 316 (335)
Q Consensus 270 at~i~~~lG~s~~~~d~evR-----~A~~~A~~LLr~hr------~aleaLaeaLle~ 316 (335)
-..+++.+|+++.+|+. ++ .-..++.++|+.-+ ..++.|.++|.+-
T Consensus 38 Wk~LAR~LGlse~dId~-I~~~~p~~l~eq~~qmL~~W~~r~G~~AT~~~L~~AL~~~ 94 (114)
T 2of5_A 38 WEPMVLSLGLSQTDIYR-CKANHPHNVQSQVVEAFIRWRQRFGKQATFQSLHNGLRAV 94 (114)
T ss_dssp HHHHHHTTTCCHHHHHH-HHHHCSSCHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHCcCcHHHHHHHHHHHc
Confidence 66778889999998885 32 23467777776433 4568888888874
No 25
>1slm_A Stromelysin-1; hydrolase, metalloprotease, fibroblast, collagen degradation; 1.90A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11
Probab=38.35 E-value=11 Score=34.51 Aligned_cols=15 Identities=40% Similarity=0.266 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhHHHH
Q 019841 173 YHNRVIQHEAGHFLI 187 (335)
Q Consensus 173 ~r~RIA~HEAGHaLV 187 (335)
....|+.||-||+|-
T Consensus 194 ~l~~va~HEiGHaLG 208 (255)
T 1slm_A 194 NLFLVAAHEIGHSLG 208 (255)
T ss_dssp EHHHHHHHHHHHHTT
T ss_pred eehhhhHHHHHHHhc
Confidence 457899999999875
No 26
>2cki_A Ulilysin; metalloprotease, hydrolase; HET: ARG; 1.7A {Methanosarcina acetivorans} PDB: 2j83_A* 3lum_A* 3lun_A*
Probab=37.29 E-value=11 Score=34.94 Aligned_cols=18 Identities=39% Similarity=0.612 Sum_probs=13.8
Q ss_pred HHHHHHHHHHhHHHHHHH
Q 019841 173 YHNRVIQHEAGHFLIAYL 190 (335)
Q Consensus 173 ~r~RIA~HEAGHaLVAyl 190 (335)
..-+++.||.||+|--|-
T Consensus 161 n~g~TltHEvGH~LGL~H 178 (262)
T 2cki_A 161 DKGRTATHEIGHWLNLYH 178 (262)
T ss_dssp CSSHHHHHHHHHHTTCCC
T ss_pred cccchhhhhhhhhhccee
Confidence 345899999999985443
No 27
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=36.87 E-value=95 Score=24.99 Aligned_cols=57 Identities=12% Similarity=0.073 Sum_probs=37.1
Q ss_pred HHHHHHhcCCCHHHHHHHHH-----HHHHHHHHHHHHcH------HHHHHHHHHHHcccchHHHHHHHH
Q 019841 270 LDALLKGLGFTQKKADSQVR-----WSLLNTVLLLRRHK------GARAKLAEAMTMGKSLGSCIDIIE 327 (335)
Q Consensus 270 at~i~~~lG~s~~~~d~evR-----~A~~~A~~LLr~hr------~aleaLaeaLle~esl~~Ci~~Ie 327 (335)
-..+++.+|+++..|+. ++ .-..++.++|+.-+ ..++.|.+||.+-.-=.++++-|.
T Consensus 38 Wk~LAR~LGlse~dId~-I~~~~p~dl~eq~~qmL~~W~~r~G~~AT~~~L~~AL~~~~l~~~v~~~~~ 105 (115)
T 2o71_A 38 WEPMVLSLGLSQTDIYR-CKANHPHNVQSQVVEAFIRWRQRFGKQATFQSLHNGLRAVEVDPSLLLHML 105 (115)
T ss_dssp HHHHHHHTTCCHHHHHH-HHHHCTTCHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHTTCCTHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHCcCcHHHHHHHHHHHcCCCHHHHHHHH
Confidence 66778889999998885 22 23467777776543 456888888887543344444343
No 28
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=35.93 E-value=47 Score=29.51 Aligned_cols=66 Identities=8% Similarity=0.094 Sum_probs=41.0
Q ss_pred hhHHHHHHHH--HHhcCCCHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHcc-cchHHHHHHHHhh
Q 019841 264 LADINKLDAL--LKGLGFTQKKADSQVRWSLLNTVLLLRRHKGARAKLAEAMTMG-KSLGSCIDIIEDN 329 (335)
Q Consensus 264 ~~Dl~~at~i--~~~lG~s~~~~d~evR~A~~~A~~LLr~hr~aleaLaeaLle~-esl~~Ci~~Ie~~ 329 (335)
.+|+.++..| ++.+|||-+++..-+........++|++++..+++=.+.|.+. +.|...++.+++.
T Consensus 47 ~~~~~~l~~i~~l~~~g~~l~~i~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~~~ 115 (278)
T 1r8e_A 47 DSQLIHLDLIKSLKYIGTPLEEMKKAQDLEMEELFAFYTEQERQIREKLDFLSALEQTISLVKKRMKRQ 115 (278)
T ss_dssp TGGGGHHHHHHHHHHTTCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677777766 5678999877665433113456677777777776666666554 4455555555443
No 29
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=34.03 E-value=55 Score=25.45 Aligned_cols=48 Identities=19% Similarity=0.318 Sum_probs=24.3
Q ss_pred hHHHHHHHH--HHhcCCCHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHH
Q 019841 265 ADINKLDAL--LKGLGFTQKKADSQVRWSLLNTVLLLRRHKGARAKLAEA 312 (335)
Q Consensus 265 ~Dl~~at~i--~~~lG~s~~~~d~evR~A~~~A~~LLr~hr~aleaLaea 312 (335)
+|+..+..+ ++.+|||-+.+..-+...-....++|++|.+.++.=.+.
T Consensus 44 ~dl~~l~~I~~l~~~G~~l~~I~~~l~~~~~~~~~~l~~~~~~l~~~i~~ 93 (109)
T 1r8d_A 44 ADLERLQQILFFKEIGFRLDEIKEMLDHPNFDRKAALQSQKEILMKKKQR 93 (109)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 566665555 456788876655433211112345566665555543333
No 30
>1g9k_A Serralysin; beta jelly roll, hydrolase; 1.96A {Pseudomonas} SCOP: b.80.7.1 d.92.1.6 PDB: 1o0q_A 1o0t_A 1om6_A 1om7_A 1om8_A 1omj_A 1h71_P
Probab=33.26 E-value=18 Score=35.98 Aligned_cols=15 Identities=40% Similarity=0.660 Sum_probs=12.8
Q ss_pred HHHHHHHHHHhHHHH
Q 019841 173 YHNRVIQHEAGHFLI 187 (335)
Q Consensus 173 ~r~RIA~HEAGHaLV 187 (335)
+...|+.||-||+|-
T Consensus 162 ~~~~va~HEiGHaLG 176 (463)
T 1g9k_A 162 YGRQTLTHEIGHTLG 176 (463)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred cchhhhhhhhhhhhc
Confidence 557899999999975
No 31
>1sat_A Serratia protease; parallel beta helix, parallel beta roll, hydrolase (serine protease); 1.75A {Serratia marcescens} SCOP: b.80.7.1 d.92.1.6 PDB: 1af0_A* 1smp_A 1srp_A
Probab=33.21 E-value=18 Score=35.98 Aligned_cols=16 Identities=38% Similarity=0.590 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHhHHHH
Q 019841 172 KYHNRVIQHEAGHFLI 187 (335)
Q Consensus 172 ~~r~RIA~HEAGHaLV 187 (335)
.+...|+.||-||+|-
T Consensus 168 ~~~~~va~HEiGHaLG 183 (471)
T 1sat_A 168 DYGRQTFTHEIGHALG 183 (471)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred cccceeeeeecccccc
Confidence 3446899999999974
No 32
>1kap_P Alkaline protease; calcium binding protein, zinc metalloprotease; 1.64A {Pseudomonas aeruginosa} SCOP: b.80.7.1 d.92.1.6 PDB: 1jiw_P 1akl_A
Probab=32.00 E-value=20 Score=35.90 Aligned_cols=15 Identities=40% Similarity=0.660 Sum_probs=12.7
Q ss_pred HHHHHHHHHHhHHHH
Q 019841 173 YHNRVIQHEAGHFLI 187 (335)
Q Consensus 173 ~r~RIA~HEAGHaLV 187 (335)
+...++.||-||+|-
T Consensus 178 ~~~~va~HEIGHaLG 192 (479)
T 1kap_P 178 YGRQTLTHEIGHTLG 192 (479)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred ccceeehhhhhhhhc
Confidence 557899999999874
No 33
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=31.50 E-value=1.8e+02 Score=23.45 Aligned_cols=21 Identities=24% Similarity=0.528 Sum_probs=10.2
Q ss_pred hHHHHHHHH--HHhcCCCHHHHH
Q 019841 265 ADINKLDAL--LKGLGFTQKKAD 285 (335)
Q Consensus 265 ~Dl~~at~i--~~~lG~s~~~~d 285 (335)
+|+.++..| ++.+|||-++|.
T Consensus 42 ~dl~~l~~I~~lr~~G~sl~eI~ 64 (135)
T 1q06_A 42 QHLNELTLLRQARQVGFNLEESG 64 (135)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHH
Confidence 444444443 344566655444
No 34
>1c7k_A NCNP, zinc endoprotease; alpha and beta protein, metalloproteinase, hydrolase; 1.00A {Streptomyces caespitosus} SCOP: d.92.1.1 PDB: 1kuh_A
Probab=31.27 E-value=22 Score=29.82 Aligned_cols=13 Identities=54% Similarity=0.884 Sum_probs=11.2
Q ss_pred HHHHHHHHHhHHH
Q 019841 174 HNRVIQHEAGHFL 186 (335)
Q Consensus 174 r~RIA~HEAGHaL 186 (335)
..+|+.||-||.|
T Consensus 77 ~~~v~aHE~GH~L 89 (132)
T 1c7k_A 77 STRVTAHETGHVL 89 (132)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CceEEeeeehhcc
Confidence 4589999999986
No 35
>1k7i_A PROC, secreted protease C; metalloprotease, hydrolase; 1.59A {Erwinia chrysanthemi} SCOP: b.80.7.1 d.92.1.6 PDB: 1k7g_A 1k7q_A 1go8_P 3hbv_P 3hda_P 3hbu_P 1go7_P 3hb2_P
Probab=29.91 E-value=22 Score=35.45 Aligned_cols=16 Identities=38% Similarity=0.605 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHhHHHH
Q 019841 172 KYHNRVIQHEAGHFLI 187 (335)
Q Consensus 172 ~~r~RIA~HEAGHaLV 187 (335)
.+...|+.||-||+|-
T Consensus 180 ~~~~~va~HEiGHaLG 195 (479)
T 1k7i_A 180 EYGRQTFTHEIGHALG 195 (479)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred cccccccHHHHHHhhc
Confidence 3446899999999974
No 36
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural genomics, the center for structural genomics of I diseases, csgid; 1.87A {Listeria monocytogenes}
Probab=28.09 E-value=69 Score=28.99 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=14.1
Q ss_pred hhHHHHHHHH--HHhcCCCHHHHHH
Q 019841 264 LADINKLDAL--LKGLGFTQKKADS 286 (335)
Q Consensus 264 ~~Dl~~at~i--~~~lG~s~~~~d~ 286 (335)
.+|+.++..| ++.+|||-+.|..
T Consensus 44 ~~dl~~L~~I~~lr~~G~sL~eIk~ 68 (249)
T 3qao_A 44 EKDVDKLQQILFFKELDFPLKKIQQ 68 (249)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 3566666655 4567777765554
No 37
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=24.89 E-value=1.4e+02 Score=24.63 Aligned_cols=37 Identities=3% Similarity=0.019 Sum_probs=20.0
Q ss_pred HHHHHHHHcHHHHHHHHHHHHcccch--HHHHHHHHhhh
Q 019841 294 NTVLLLRRHKGARAKLAEAMTMGKSL--GSCIDIIEDNI 330 (335)
Q Consensus 294 ~A~~LLr~hr~aleaLaeaLle~esl--~~Ci~~Ie~~~ 330 (335)
+-..-|++..+.++.+.+.+.+.+.+ +...++|++-+
T Consensus 94 ~~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~Li~~~~ 132 (146)
T 3hh0_A 94 AEQERIAKVLSHMDEMTKKFQKEERVNVALFSSFLQTFI 132 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHH
Confidence 33444555555666666666555553 44556666543
No 38
>830c_A MMP-13, MMP-13; matrix metalloprotease; HET: RS1; 1.60A {Homo sapiens} SCOP: d.92.1.11 PDB: 456c_A* 1you_A* 4a7b_A* 3tvc_A* 1eub_A* 1xuc_A* 1xud_A* 1xur_A* 2yig_A* 3elm_A* 3i7g_A* 3i7i_A* 3zxh_A* 2ow9_A* 2ozr_A* 3kek_A* 3kej_A* 3kec_A* 2d1n_A* 1fls_A* ...
Probab=24.25 E-value=24 Score=30.22 Aligned_cols=15 Identities=40% Similarity=0.233 Sum_probs=12.4
Q ss_pred HHHHHHHHHHhHHHH
Q 019841 173 YHNRVIQHEAGHFLI 187 (335)
Q Consensus 173 ~r~RIA~HEAGHaLV 187 (335)
+...|+.||-||+|-
T Consensus 112 ~l~~v~~hE~Gh~lG 126 (168)
T 830c_A 112 NLFLVAAHEFGHSLG 126 (168)
T ss_dssp EHHHHHHHHHHHHTT
T ss_pred chhhhhhhhhcchhc
Confidence 456799999999864
No 39
>3ma2_D Matrix metalloproteinase-14; protein - protein complex, cleavage on PAIR of basic residue disulfide bond, membrane, metal-binding; 2.05A {Homo sapiens} SCOP: d.92.1.11 PDB: 1bqq_M 1buv_M
Probab=23.12 E-value=26 Score=30.53 Aligned_cols=15 Identities=40% Similarity=0.319 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHhHHH
Q 019841 172 KYHNRVIQHEAGHFL 186 (335)
Q Consensus 172 ~~r~RIA~HEAGHaL 186 (335)
.+..-|+.||-||+|
T Consensus 120 ~~l~~v~~hE~Gh~l 134 (181)
T 3ma2_D 120 NDIFLVAVHELGHAL 134 (181)
T ss_dssp EEHHHHHHHHHHHHT
T ss_pred ceeeeeehhhccccc
Confidence 355679999999983
No 40
>2gf5_A FADD protein; death domain, death effector domain, apoptosis, death- inducing signaling complex; NMR {Homo sapiens} SCOP: a.77.1.2 a.77.1.4
Probab=22.63 E-value=1.1e+02 Score=26.35 Aligned_cols=57 Identities=21% Similarity=0.220 Sum_probs=37.8
Q ss_pred HHHHHHhcCCCHHHHHHHHH-----HHHHHHHHHHHHcH------HHHHHHHHHHHcccchHHHHHHHHh
Q 019841 270 LDALLKGLGFTQKKADSQVR-----WSLLNTVLLLRRHK------GARAKLAEAMTMGKSLGSCIDIIED 328 (335)
Q Consensus 270 at~i~~~lG~s~~~~d~evR-----~A~~~A~~LLr~hr------~aleaLaeaLle~esl~~Ci~~Ie~ 328 (335)
...+++.+||+...|+. ++ .-..++.++|+..+ ..++.|.+||.+-. ..+..+.|+.
T Consensus 112 Wk~Lar~Lgl~~~~I~~-I~~~~~~d~~eq~~~mL~~W~~r~g~~At~~~L~~AL~~~~-~~diae~l~~ 179 (191)
T 2gf5_A 112 WRRLARQLKVSDTKIDS-IEDRYPRNLTERVRESLRIWKNTEKENATVAHLVGALRSCQ-MNLVADLVQE 179 (191)
T ss_dssp HHHHHHHTTCCHHHHHH-HHHHSSSCSHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHT-CHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHH-HHHhCCCCHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHcC-cHHHHHHHHH
Confidence 56678889999988875 22 23467888886654 45799999998754 3333333443
No 41
>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A
Probab=22.62 E-value=32 Score=32.91 Aligned_cols=14 Identities=36% Similarity=0.207 Sum_probs=12.0
Q ss_pred HHHHHHHHHhHHHH
Q 019841 174 HNRVIQHEAGHFLI 187 (335)
Q Consensus 174 r~RIA~HEAGHaLV 187 (335)
...|+.||-||+|-
T Consensus 107 ~~~~~~HE~gH~lG 120 (365)
T 3ba0_A 107 LFLTAVHEIGHSLG 120 (365)
T ss_dssp SSHHHHHHHHHHHT
T ss_pred ceeehhhhhhhhhc
Confidence 45799999999985
No 42
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=21.64 E-value=1e+02 Score=23.93 Aligned_cols=50 Identities=18% Similarity=0.262 Sum_probs=24.9
Q ss_pred hhHHHHHHHH--HHhcCCCHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHH
Q 019841 264 LADINKLDAL--LKGLGFTQKKADSQVRWSLLNTVLLLRRHKGARAKLAEAM 313 (335)
Q Consensus 264 ~~Dl~~at~i--~~~lG~s~~~~d~evR~A~~~A~~LLr~hr~aleaLaeaL 313 (335)
.+|+.++..| ++.+|||.+++..-+...-.....+|+++.+.++.=.+.|
T Consensus 42 ~~dl~~l~~I~~lr~~G~sl~~I~~~l~~~~~~~~~~l~~~~~~l~~~i~~l 93 (108)
T 2vz4_A 42 DADLDRLQQILFYRELGFPLDEVAALLDDPAADPRAHLRRQHELLSARIGKL 93 (108)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHTC-----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666655 4567888776654332111123455555555544433333
No 43
>3c37_A Peptidase, M48 family; Q74D82, GSR143A, structural genomics, protein structure initiative, northeast structural genomics consortium; 1.70A {Geobacter sulfurreducens pca}
Probab=20.69 E-value=30 Score=31.21 Aligned_cols=22 Identities=18% Similarity=0.146 Sum_probs=19.3
Q ss_pred CHhHHHHHHHHHHhHHHHHHHh
Q 019841 170 SQKYHNRVIQHEAGHFLIAYLV 191 (335)
Q Consensus 170 s~~~r~RIA~HEAGHaLVAylL 191 (335)
++++..-|.-||-||..-.+..
T Consensus 96 ~~~ELaaVLaHElgH~~~~H~~ 117 (253)
T 3c37_A 96 NETELAGVLAHEINHAVARHGT 117 (253)
T ss_dssp SHHHHHHHHHHHHHHHHTTHHH
T ss_pred CHHHHHHHHHHHHHHHHCcCHH
Confidence 7999999999999999776664
No 44
>1r42_A Angiotensin I converting enzyme 2; zinc metallopeptidase domain, Na open conformation, chloride ION binding site; HET: NAG; 2.20A {Homo sapiens} SCOP: d.92.1.5 PDB: 1r4l_A* 3sci_A 3scj_A 2ajf_A* 3kbh_A* 3d0g_A* 3d0h_A* 3d0i_A* 3sck_A 3scl_A
Probab=20.54 E-value=36 Score=34.64 Aligned_cols=25 Identities=16% Similarity=0.085 Sum_probs=16.4
Q ss_pred CHhHHHHHHHHHHhHHHHHHHh-CCCC
Q 019841 170 SQKYHNRVIQHEAGHFLIAYLV-GILP 195 (335)
Q Consensus 170 s~~~r~RIA~HEAGHaLVAylL-g~PV 195 (335)
+.++- .+.+||.||++=-... +.|+
T Consensus 365 ~~~d~-~t~~HE~GHa~y~~~~~~~p~ 390 (615)
T 1r42_A 365 TMDDF-LTAHHEMGHIQYDMAYAAQPF 390 (615)
T ss_dssp SHHHH-HHHHHHHHHHHHHHHTTTSCG
T ss_pred CHHHH-HHHHHHHHHHHHHHHHcCCCh
Confidence 34444 3799999998774444 3465
No 45
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=20.45 E-value=2.6e+02 Score=22.19 Aligned_cols=47 Identities=17% Similarity=0.095 Sum_probs=32.3
Q ss_pred HHHHHHhcCCCHHHHHH-HHH---HHHHHHHHHHHHc-------HHHHHHHHHHHHcc
Q 019841 270 LDALLKGLGFTQKKADS-QVR---WSLLNTVLLLRRH-------KGARAKLAEAMTMG 316 (335)
Q Consensus 270 at~i~~~lG~s~~~~d~-evR---~A~~~A~~LLr~h-------r~aleaLaeaLle~ 316 (335)
-..+++.+||+..+|+. +.+ .-..++.++|+.- ...++.|.++|.+-
T Consensus 27 Wk~LAr~Lg~s~~~I~~I~~~~~~~l~eq~~~mL~~W~~~~g~~~Atv~~L~~aL~~~ 84 (118)
T 2of5_H 27 WPAVALHLGVSYREVQRIRHEFRDDLDEQIRHMLFSWAERQAGQPGAVGLLVQALEQS 84 (118)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHTTSSCSSHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHc
Confidence 45667789999988775 122 1356777777443 46789999999874
Done!