Query 019845
Match_columns 335
No_of_seqs 196 out of 1482
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 07:57:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019845.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019845hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 98.8 1.8E-07 6.2E-12 71.8 13.0 68 79-146 37-105 (110)
2 2i68_A Protein EMRE; transmemb 98.6 1.3E-07 4.4E-12 75.3 8.3 68 79-146 37-105 (137)
3 2i68_A Protein EMRE; transmemb 98.4 2.5E-07 8.7E-12 73.6 5.7 68 240-307 37-105 (137)
4 3b5d_A Multidrug transporter E 98.1 1.9E-05 6.3E-10 60.5 9.8 66 242-307 39-105 (110)
5 2jo1_A Phospholemman; FXYD1, N 21.0 62 0.0021 21.7 2.3 11 322-332 62-72 (72)
6 3rko_J NADH-quinone oxidoreduc 8.7 3.5E+02 0.012 21.7 4.1 32 274-305 127-161 (184)
7 1tac_A TAT protein; transcript 5.3 2.5E+02 0.0087 19.5 1.3 17 310-326 55-71 (86)
8 2v50_A Multidrug resistance pr 4.4 2.5E+03 0.085 21.4 9.3 24 274-297 379-402 (1052)
9 2l2t_A Receptor tyrosine-prote 4.3 5.2E+02 0.018 15.5 2.1 10 297-306 27-36 (44)
10 2ks1_B Epidermal growth factor 4.2 5.1E+02 0.018 15.5 2.0 9 298-306 29-37 (44)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.76 E-value=1.8e-07 Score=71.81 Aligned_cols=68 Identities=21% Similarity=0.259 Sum_probs=62.2
Q ss_pred HHHHHHHhHHHHHHHhcCChhHHHHh-hhhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhhhcccC
Q 019845 79 SIIYLVHNNVQFATLTYVDTSTYQIM-GNLKIVTTGILFRLFLRRRLSTLQWMAIVLLAVGTTTSQVKG 146 (335)
Q Consensus 79 a~l~~~~~~l~f~al~~~~~~~~~ll-~~~~pl~~alls~~~l~er~~~~q~~~i~l~~~Gv~iv~~~~ 146 (335)
.+++.++..+...+++++|.+.+..+ ....|+++++++++++||++++.|+.|+.+..+|+..+...+
T Consensus 37 ~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 45678888899999999999999888 899999999999999999999999999999999999886643
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.60 E-value=1.3e-07 Score=75.33 Aligned_cols=68 Identities=21% Similarity=0.259 Sum_probs=51.2
Q ss_pred HHHHHHHhHHHHHHHhcCChhHHHHh-hhhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhhhcccC
Q 019845 79 SIIYLVHNNVQFATLTYVDTSTYQIM-GNLKIVTTGILFRLFLRRRLSTLQWMAIVLLAVGTTTSQVKG 146 (335)
Q Consensus 79 a~l~~~~~~l~f~al~~~~~~~~~ll-~~~~pl~~alls~~~l~er~~~~q~~~i~l~~~Gv~iv~~~~ 146 (335)
.+++.++..++..+++++|++.+..+ ....|+++++++++++||++++.|++|+++.++|+.++...+
T Consensus 37 i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 45688899999999999999988888 899999999999999999999999999999999999987643
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.43 E-value=2.5e-07 Score=73.62 Aligned_cols=68 Identities=13% Similarity=0.178 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhhccCCC
Q 019845 240 VFNLGSTGLLVSWLMKYADNIIKVYS-TSMAMLLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMYFAPP 307 (335)
Q Consensus 240 i~~~ai~g~~~~~~lk~~~a~~~~~~-~~~~~v~~~l~s~l~fge~~t~~~~~G~~lVi~gv~ly~~~~ 307 (335)
++..+++..+..+.+|+.+....... +.+.++++.++|+++|||++++.+++|+++|+.|+++.+..+
T Consensus 37 i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 34445566677788898887776666 899999999999999999999999999999999998887654
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.12 E-value=1.9e-05 Score=60.46 Aligned_cols=66 Identities=14% Similarity=0.163 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhhccCCC
Q 019845 242 NLGSTGLLVSWLMKYADNIIKVYS-TSMAMLLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMYFAPP 307 (335)
Q Consensus 242 ~~ai~g~~~~~~lk~~~a~~~~~~-~~~~~v~~~l~s~l~fge~~t~~~~~G~~lVi~gv~ly~~~~ 307 (335)
..++...+..+.+|+.+....... ..+.++++.++|+++|||++|+.+++|.++|+.|+...+..+
T Consensus 39 ~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 39 CYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 344455666778898887766555 789999999999999999999999999999999998876653
No 5
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=21.04 E-value=62 Score=21.72 Aligned_cols=11 Identities=45% Similarity=0.739 Sum_probs=6.4
Q ss_pred cchhhhhhhcc
Q 019845 322 DSLREVSVERR 332 (335)
Q Consensus 322 ~~~~~~~~~~~ 332 (335)
.++++.|+.||
T Consensus 62 ~~~~~~~~~~~ 72 (72)
T 2jo1_A 62 SSIRRLSTRRR 72 (72)
T ss_dssp HHHHHHHHCCC
T ss_pred HHHHHHhhccC
Confidence 35566666554
No 6
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=8.71 E-value=3.5e+02 Score=21.73 Aligned_cols=32 Identities=9% Similarity=0.119 Sum_probs=22.0
Q ss_pred HHHHHHHhCCCccHHHHHHHHHHH---HHhhhccC
Q 019845 274 MVLSVYLFNFKPTLQLFLGIIICM---MSLHMYFA 305 (335)
Q Consensus 274 ~l~s~l~fge~~t~~~~~G~~lVi---~gv~ly~~ 305 (335)
--+|..+|++-.=+..+.|..+.. +++.+..+
T Consensus 127 ~~iG~~Lft~Y~lpFElaSvlLLvAmIGAIvLarr 161 (184)
T 3rko_J 127 KAVGITLFGPYVLAVELASMLLLAGLVVAFHVGRE 161 (184)
T ss_dssp HHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 357888888888888888877643 44455433
No 7
>1tac_A TAT protein; transcription regulation, HIV-1, transactivation, RNA binding, structure; NMR {Human immunodeficiency virus 1} SCOP: j.40.1.1
Probab=5.25 E-value=2.5e+02 Score=19.48 Aligned_cols=17 Identities=6% Similarity=0.046 Sum_probs=11.5
Q ss_pred CCCCCCCCcCCCcchhh
Q 019845 310 LVDIPSTAKAAPDSLRE 326 (335)
Q Consensus 310 ~~~~~~~~~~~~~~~~~ 326 (335)
+...|+..+.++|.+.+
T Consensus 55 RRr~p~~~~~hq~~~~k 71 (86)
T 1tac_A 55 RRRPSQGGQTHQDPIPK 71 (86)
T ss_dssp SCTTCCSSCCCSSSSTT
T ss_pred cCCCCCCCCCCcCcCCC
Confidence 33456667778887776
No 8
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}
Probab=4.36 E-value=2.5e+03 Score=21.43 Aligned_cols=24 Identities=13% Similarity=0.311 Sum_probs=17.7
Q ss_pred HHHHHHHhCCCccHHHHHHHHHHH
Q 019845 274 MVLSVYLFNFKPTLQLFLGIIICM 297 (335)
Q Consensus 274 ~l~s~l~fge~~t~~~~~G~~lVi 297 (335)
++....++|.+++....+|.++.+
T Consensus 379 ~~~~l~~~g~~ln~~s~~gl~~~i 402 (1052)
T 2v50_A 379 TFGVLAAFGFSINTLTMFGMVLAI 402 (1052)
T ss_dssp HHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHH
Confidence 345556789999999888776654
No 9
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=4.27 E-value=5.2e+02 Score=15.47 Aligned_cols=10 Identities=10% Similarity=0.335 Sum_probs=4.4
Q ss_pred HHHhhhccCC
Q 019845 297 MMSLHMYFAP 306 (335)
Q Consensus 297 i~gv~ly~~~ 306 (335)
..+.++|.+.
T Consensus 27 ~~~~~~~~RR 36 (44)
T 2l2t_A 27 GLTFAVYVRR 36 (44)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHhhh
Confidence 3444455444
No 10
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=4.25 E-value=5.1e+02 Score=15.46 Aligned_cols=9 Identities=0% Similarity=0.468 Sum_probs=3.9
Q ss_pred HHhhhccCC
Q 019845 298 MSLHMYFAP 306 (335)
Q Consensus 298 ~gv~ly~~~ 306 (335)
.+.++|.+.
T Consensus 29 ~~~~~~~RR 37 (44)
T 2ks1_B 29 LGIGLFMRR 37 (44)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHhhh
Confidence 344444433
Done!