Query 019845
Match_columns 335
No_of_seqs 196 out of 1482
Neff 8.8
Searched_HMMs 13730
Date Mon Mar 25 07:57:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019845.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019845hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2r6gf1 e.70.1.1 (F:13-260) Ma 7.7 4.5E+02 0.033 20.1 7.7 33 108-140 34-66 (248)
2 d2h8pc1 f.14.1.1 (C:22-78) Pot 2.8 3.9E+02 0.029 15.3 2.2 18 291-308 15-32 (57)
3 d1tf3a2 g.37.1.1 (A:41-70) Tra 2.8 1E+02 0.0074 15.2 -0.6 11 320-330 3-13 (30)
4 d1x6oa1 b.34.5.2 (A:19-86) Euk 2.4 96 0.007 19.1 -1.3 16 318-333 19-34 (68)
5 d1khia1 b.34.5.2 (A:27-102) Wo 1.8 1.4E+02 0.0098 18.8 -1.3 14 317-330 22-35 (76)
6 d1m8na_ b.81.2.1 (A:) Thermal 1.7 2.8E+02 0.02 18.3 0.1 12 316-327 104-115 (120)
7 d2awia1 a.35.1.11 (A:2-66) Prg 1.7 4.2E+02 0.03 15.0 0.9 15 317-331 36-52 (65)
8 d1l0sa_ b.81.2.1 (A:) Thermal 1.5 3.2E+02 0.023 17.0 0.1 12 316-327 72-83 (88)
9 d3dtub2 f.17.2.1 (B:30-129) Ba 1.4 7.3E+02 0.053 15.4 2.0 41 287-327 33-73 (100)
10 d1pv7a_ f.38.1.2 (A:) Lactose 1.3 1.7E+03 0.12 15.9 4.9 74 259-332 141-214 (417)
No 1
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=7.66 E-value=4.5e+02 Score=20.08 Aligned_cols=33 Identities=9% Similarity=0.210 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHh
Q 019845 108 KIVTTGILFRLFLRRRLSTLQWMAIVLLAVGTT 140 (335)
Q Consensus 108 ~pl~~alls~~~l~er~~~~q~~~i~l~~~Gv~ 140 (335)
..+.+++..+.++.+|--+.||+-=.+.+..+.
T Consensus 34 ~~~~~~~~~~vy~s~r~~p~kyi~PG~~~l~~F 66 (248)
T d2r6gf1 34 TLILSSAGLYIFANRKAYAWRYVYPGMAGMGLF 66 (248)
T ss_dssp HHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHheEEEEEccCccceehhhhHHHHHHHH
Confidence 445566677888888888888886555544443
No 2
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=2.84 E-value=3.9e+02 Score=15.32 Aligned_cols=18 Identities=28% Similarity=0.242 Sum_probs=9.6
Q ss_pred HHHHHHHHHhhhccCCCC
Q 019845 291 LGIIICMMSLHMYFAPPG 308 (335)
Q Consensus 291 ~G~~lVi~gv~ly~~~~~ 308 (335)
+-..+++.|..+|..++.
T Consensus 15 ~~i~i~~~s~~~y~~E~~ 32 (57)
T d2h8pc1 15 LVIVLLAGSYLAVLAERG 32 (57)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 334445566666665543
No 3
>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}
Probab=2.80 E-value=1e+02 Score=15.21 Aligned_cols=11 Identities=9% Similarity=-0.097 Sum_probs=7.4
Q ss_pred CCcchhhhhhh
Q 019845 320 APDSLREVSVE 330 (335)
Q Consensus 320 ~~~~~~~~~~~ 330 (335)
-||+-++|+.|
T Consensus 3 fpc~~egc~kg 13 (30)
T d1tf3a2 3 FPCKEEGCEKG 13 (30)
T ss_dssp EECCCSSCCCE
T ss_pred cCccccccccc
Confidence 37777777654
No 4
>d1x6oa1 b.34.5.2 (A:19-86) Eukaryotic initiation translation factor 5a (eIF5a) {Leishmania infantum [TaxId: 5671]}
Probab=2.39 E-value=96 Score=19.10 Aligned_cols=16 Identities=19% Similarity=0.341 Sum_probs=11.0
Q ss_pred cCCCcchhhhhhhccc
Q 019845 318 KAAPDSLREVSVERRT 333 (335)
Q Consensus 318 ~~~~~~~~~~~~~~~~ 333 (335)
+.+||++.++++-..+
T Consensus 19 ~g~PCkI~~istSk~G 34 (68)
T d1x6oa1 19 NGRPCKVIDLSVSKTG 34 (68)
T ss_dssp TTEEEEEEEEEECCC-
T ss_pred CCEeeEEEEEeecCCC
Confidence 5788888887765443
No 5
>d1khia1 b.34.5.2 (A:27-102) Woronin body major protein (Hex1) {Filamentous fungi (Neurospora crassa) [TaxId: 5141]}
Probab=1.77 E-value=1.4e+02 Score=18.79 Aligned_cols=14 Identities=14% Similarity=0.242 Sum_probs=10.5
Q ss_pred CcCCCcchhhhhhh
Q 019845 317 AKAAPDSLREVSVE 330 (335)
Q Consensus 317 ~~~~~~~~~~~~~~ 330 (335)
-+.+||++.++++-
T Consensus 22 i~g~PCkIv~istS 35 (76)
T d1khia1 22 LQGRPCQVIRISTS 35 (76)
T ss_dssp ETTEEEEEEEEEEC
T ss_pred ECCcccEEEEEeec
Confidence 36889999887654
No 6
>d1m8na_ b.81.2.1 (A:) Thermal hysteresis protein {Spruce budworm (Choristoneura fumiferana), 7-turn isoforms [TaxId: 7141]}
Probab=1.69 E-value=2.8e+02 Score=18.35 Aligned_cols=12 Identities=17% Similarity=0.124 Sum_probs=7.9
Q ss_pred CCcCCCcchhhh
Q 019845 316 TAKAAPDSLREV 327 (335)
Q Consensus 316 ~~~~~~~~~~~~ 327 (335)
++|++||++++|
T Consensus 104 ~apsa~crisgc 115 (120)
T d1m8na_ 104 ATPAAACKISGC 115 (120)
T ss_dssp ECCCSSCEEESC
T ss_pred cCCCCccEeccc
Confidence 456777777665
No 7
>d2awia1 a.35.1.11 (A:2-66) PrgX {Enterococcus faecalis [TaxId: 1351]}
Probab=1.67 E-value=4.2e+02 Score=14.98 Aligned_cols=15 Identities=40% Similarity=0.401 Sum_probs=9.4
Q ss_pred CcCCCcchhh--hhhhc
Q 019845 317 AKAAPDSLRE--VSVER 331 (335)
Q Consensus 317 ~~~~~~~~~~--~~~~~ 331 (335)
.+.||.+.++ +-+||
T Consensus 36 adsrpisveel~kfser 52 (65)
T d2awia1 36 ADSRPISVEELSKFSER 52 (65)
T ss_dssp TTCSCCBHHHHHHHHHH
T ss_pred cCCCcccHHHHHHHHHH
Confidence 5577877777 33444
No 8
>d1l0sa_ b.81.2.1 (A:) Thermal hysteresis protein {Spruce budworm (Choristoneura fumiferana), 5-turn isoforms [TaxId: 7141]}
Probab=1.51 E-value=3.2e+02 Score=17.02 Aligned_cols=12 Identities=17% Similarity=0.124 Sum_probs=7.9
Q ss_pred CCcCCCcchhhh
Q 019845 316 TAKAAPDSLREV 327 (335)
Q Consensus 316 ~~~~~~~~~~~~ 327 (335)
.+|+++|++++|
T Consensus 72 ~~ps~ac~isgc 83 (88)
T d1l0sa_ 72 PAPSAACKISGC 83 (88)
T ss_dssp ECCCTTCEEESC
T ss_pred cCCCcccEEece
Confidence 456677777665
No 9
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=1.42 E-value=7.3e+02 Score=15.41 Aligned_cols=41 Identities=20% Similarity=0.073 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCCCCCCCCcCCCcchhhh
Q 019845 287 LQLFLGIIICMMSLHMYFAPPGMLVDIPSTAKAAPDSLREV 327 (335)
Q Consensus 287 ~~~~~G~~lVi~gv~ly~~~~~~~~~~~~~~~~~~~~~~~~ 327 (335)
.....+..+++.+..+|..-+.++.+.+...+-+-++.-|.
T Consensus 33 ~~i~~~I~~~V~~~l~~~~~~~r~~~~~~~~~~~~n~~LEi 73 (100)
T d3dtub2 33 LVIIAAITIFVTLLILYAVWRFHEKRNKVPARFTHNSPLEI 73 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHBTTTCCSCCCCCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhccCCCCCccccCcchHHH
No 10
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=1.29 E-value=1.7e+03 Score=15.88 Aligned_cols=74 Identities=4% Similarity=-0.045 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCcCCCcchhhhhhhcc
Q 019845 259 NIIKVYSTSMAMLLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMYFAPPGMLVDIPSTAKAAPDSLREVSVERR 332 (335)
Q Consensus 259 a~~~~~~~~~~~v~~~l~s~l~fge~~t~~~~~G~~lVi~gv~ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (335)
............+...+.+++.-..........+....+.+.......++.+...+...+...+..+......+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (417)
T d1pv7a_ 141 GRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLAL 214 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHHSCCCCCCHHHHH
T ss_pred HHHhhhhccccccccccccccccccccccccchhhHHHHHHHHHHHHhcccccchhhhhhhhhhcccccccccc
Done!