BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019847
(335 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 293 bits (750), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 145/307 (47%), Positives = 199/307 (64%), Gaps = 8/307 (2%)
Query: 6 RILDAPYLMEDYYSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVS 65
RILDAP + DYY ++DW NVLAVAL ++LW +G + +LLQ+ +Y +SV+
Sbjct: 95 RILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVA 154
Query: 66 WSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSI 125
W + LAVG +++QLWD + K +RN+ H RV + S WN +IL+SGS+ I
Sbjct: 155 WIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLS---WNSYILSSGSRSGHI 211
Query: 126 INHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSS-KSLHR 184
+HDVRV+ + + + HS EVCGL+W+ +G LASGG+DN+V +W + L
Sbjct: 212 HHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQT 271
Query: 185 FTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRH 244
FT H G VKA+AW P Q NVLATGGG D I+IWNV G C+ +DA +Q+C + W+ H
Sbjct: 272 FTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPH 331
Query: 245 HKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADET 304
+KE++SGHGF+ N+L +WKYP M KV EL+ SR+L L+ SPDG TVA+A ADET
Sbjct: 332 YKELISGHGFAQ----NQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADET 387
Query: 305 IRFWEAF 311
+R W F
Sbjct: 388 LRLWRCF 394
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 51/128 (39%), Gaps = 14/128 (10%)
Query: 66 WSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWN-HWNGHILTSGSKDKS 124
W + G D +++W+ + + ++ H +V + W+ H+ I G
Sbjct: 287 WQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQ 345
Query: 125 IINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIW-----------ER 173
++ V +K H+ V L S +G +AS D +R+W ER
Sbjct: 346 LVIWKYPTMAKVAE-LKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRRER 404
Query: 174 SKMSSSKS 181
K S++KS
Sbjct: 405 EKASAAKS 412
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 293 bits (750), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 145/307 (47%), Positives = 199/307 (64%), Gaps = 8/307 (2%)
Query: 6 RILDAPYLMEDYYSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVS 65
RILDAP + DYY ++DW NVLAVAL ++LW +G + +LLQ+ +Y +SV+
Sbjct: 106 RILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVA 165
Query: 66 WSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSI 125
W + LAVG +++QLWD + K +RN+ H RV + S WN +IL+SGS+ I
Sbjct: 166 WIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLS---WNSYILSSGSRSGHI 222
Query: 126 INHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSS-KSLHR 184
+HDVRV+ + + + HS EVCGL+W+ +G LASGG+DN+V +W + L
Sbjct: 223 HHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQT 282
Query: 185 FTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRH 244
FT H G VKA+AW P Q NVLATGGG D I+IWNV G C+ +DA +Q+C + W+ H
Sbjct: 283 FTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPH 342
Query: 245 HKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADET 304
+KE++SGHGF+ N+L +WKYP M KV EL+ SR+L L+ SPDG TVA+A ADET
Sbjct: 343 YKELISGHGFAQ----NQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADET 398
Query: 305 IRFWEAF 311
+R W F
Sbjct: 399 LRLWRCF 405
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 51/128 (39%), Gaps = 14/128 (10%)
Query: 66 WSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWN-HWNGHILTSGSKDKS 124
W + G D +++W+ + + ++ H +V + W+ H+ I G
Sbjct: 298 WQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQ 356
Query: 125 IINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIW-----------ER 173
++ V +K H+ V L S +G +AS D +R+W ER
Sbjct: 357 LVIWKYPTMAKVAE-LKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRRER 415
Query: 174 SKMSSSKS 181
K S++KS
Sbjct: 416 EKASAAKS 423
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 292 bits (747), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 145/307 (47%), Positives = 199/307 (64%), Gaps = 8/307 (2%)
Query: 6 RILDAPYLMEDYYSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVS 65
RILDAP + DYY ++DW NVLAVAL ++LW +G + +LLQ+ +Y +SV+
Sbjct: 15 RILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVA 74
Query: 66 WSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSI 125
W + LAVG +++QLWD + K +RN+ H RV + S WN +IL+SGS+ I
Sbjct: 75 WIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLS---WNSYILSSGSRSGHI 131
Query: 126 INHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSS-KSLHR 184
+HDVRV+ + + + HS EVCGL+W+ +G LASGG+DN+V +W + L
Sbjct: 132 HHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQT 191
Query: 185 FTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRH 244
FT H G VKA+AW P Q NVLATGGG D I+IWNV G C+ +DA +Q+C + W+ H
Sbjct: 192 FTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPH 251
Query: 245 HKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADET 304
+KE++SGHGF+ N+L +WKYP M KV EL+ SR+L L+ SPDG TVA+A ADET
Sbjct: 252 YKELISGHGFAQ----NQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADET 307
Query: 305 IRFWEAF 311
+R W F
Sbjct: 308 LRLWRCF 314
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 239 bits (610), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 126/310 (40%), Positives = 191/310 (61%), Gaps = 17/310 (5%)
Query: 6 RILDAPYLMEDYYSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVS 65
R+LDAP +++DYY ++DW NV+AVAL +++W ++G V L + E Y SV
Sbjct: 83 RVLDAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAET-DESTYVASVK 141
Query: 66 WSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSI 125
WSHD L+VG + + ++D E+ +R + GH RV SWN H+L+SGS+ +I
Sbjct: 142 WSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNR---HVLSSGSRSGAI 198
Query: 126 INHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRF 185
+HDVR++N+ ++ HS EVCGL W ++G LASGG+DNVV+IW+ + S+ +F
Sbjct: 199 HHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWD-----ARSSIPKF 253
Query: 186 --TDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNR 243
T+H VKA+AW P Q N+LATGGG D I WN G ++ +DA +Q+ L W+
Sbjct: 254 TKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSP 313
Query: 244 HHKEILSGHGFSASGDGNKLCLWKYPN--MTKVGELQSSNSRILDLSQSPDGLTVATAGA 301
H KEI+S HGF N L +W Y + +TK ++ + ++R+L + SPDG ++TA +
Sbjct: 314 HSKEIMSTHGFP----DNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAAS 369
Query: 302 DETIRFWEAF 311
DE ++FW +
Sbjct: 370 DENLKFWRVY 379
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 73/292 (25%), Positives = 127/292 (43%), Gaps = 37/292 (12%)
Query: 40 LWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGH 99
+W +E G ++ L+ G D +S+ H K LA D ++LWD + + +R + GH
Sbjct: 134 VWDYETGDFERTLK--GHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGH 191
Query: 100 HRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGE---VCGLKWSNEG 156
V++ S NG + S S+DK+I +V+ C+K +G V ++ + +G
Sbjct: 192 DHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTGY----CVKTFTGHREWVRMVRPNQDG 246
Query: 157 NLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSP---HQVNVLATG----- 208
L+AS +D VR+W +++ + +H V+ ++W+P + ATG
Sbjct: 247 TLIASCSNDQTVRVW---VVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKK 303
Query: 209 ---------GGREDGCIKIWNVQKGTCIHGIDAKAQ-ICGLEWNRHHKEILSGHGFSASG 258
G D IK+W+V G C+ + + G+ ++ K ILS
Sbjct: 304 SGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILS------CA 357
Query: 259 DGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEA 310
D L +W Y N + L + + L V T D+T++ WE
Sbjct: 358 DDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 81.6 bits (200), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 71/283 (25%), Positives = 130/283 (45%), Gaps = 33/283 (11%)
Query: 40 LWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGH 99
+W +GK +K + G + V+WS D+ L D L++WD + K ++ L+GH
Sbjct: 48 IWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH 105
Query: 100 HRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLL 159
V ++N +++ SGS D+S+ DV+ + + + AHS V + ++ +G+L+
Sbjct: 106 SNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKT-LPAHSDPVSAVHFNRDGSLI 163
Query: 160 ASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIW 219
S D + RIW+ + K+L D V + +SP+ +LA D +K+W
Sbjct: 164 VSSSYDGLCRIWDTASGQCLKTL--IDDDNPPVSFVKFSPNGKYILA---ATLDNTLKLW 218
Query: 220 NVQKGTCI----------HGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYP 269
+ KG C+ + I A + G +W I+SG + N + +W
Sbjct: 219 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW------IVSG------SEDNLVYIWNLQ 266
Query: 270 NMTKVGELQSSNSRILDLSQSPDGLTVATAGA--DETIRFWEA 310
V +LQ ++ + P +A+A D+TI+ W++
Sbjct: 267 TKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 309
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 100/219 (45%), Gaps = 16/219 (7%)
Query: 52 LQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHW 111
+ G +SV +S + + LA D +++W A K + + GH ++ +W+
Sbjct: 16 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS- 74
Query: 112 NGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIW 171
+ ++L S S DK++ DV S +K HS V ++ + NL+ SG D VRIW
Sbjct: 75 DSNLLVSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 133
Query: 172 ERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGI- 230
+ + + K L H V A+ ++ ++++ DG +IW+ G C+ +
Sbjct: 134 D---VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS---YDGLCRIWDTASGQCLKTLI 187
Query: 231 -DAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKY 268
D + ++++ + K IL A+ N L LW Y
Sbjct: 188 DDDNPPVSFVKFSPNGKYIL------AATLDNTLKLWDY 220
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 74/172 (43%), Gaps = 13/172 (7%)
Query: 140 IKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSP 199
+ H+ V +K+S G LAS D +++IW K++ + H G+ +AWS
Sbjct: 18 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAWSS 74
Query: 200 HQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQ-ICGLEWNRHHKEILSGHGFSASG 258
N+L + +D +KIW+V G C+ + + + +N I+SG F S
Sbjct: 75 DS-NLLVSAS--DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG-SFDES- 129
Query: 259 DGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEA 310
+ +W + L + + + + + DG + ++ D R W+
Sbjct: 130 ----VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 177
Score = 34.7 bits (78), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Query: 29 VLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWS-HDAKTLAVGYMDSKLQLWDA 87
+LA L L LW + GK K + Y ++S K + G D+ + +W+
Sbjct: 206 ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 265
Query: 88 ETSKLVRNLEGHHRRVATSSWNHWNGHILTSGS--KDKSI 125
+T ++V+ L+G H V S+ H +I+ S + DK+I
Sbjct: 266 QTKEIVQKLQG-HTDVVISTACHPTENIIASAALENDKTI 304
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 81.6 bits (200), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 71/283 (25%), Positives = 130/283 (45%), Gaps = 33/283 (11%)
Query: 40 LWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGH 99
+W +GK +K + G + V+WS D+ L D L++WD + K ++ L+GH
Sbjct: 66 IWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH 123
Query: 100 HRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLL 159
V ++N +++ SGS D+S+ DV+ + + + AHS V + ++ +G+L+
Sbjct: 124 SNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKT-LPAHSDPVSAVHFNRDGSLI 181
Query: 160 ASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIW 219
S D + RIW+ + K+L D V + +SP+ +LA D +K+W
Sbjct: 182 VSSSYDGLCRIWDTASGQCLKTL--IDDDNPPVSFVKFSPNGKYILA---ATLDNTLKLW 236
Query: 220 NVQKGTCI----------HGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYP 269
+ KG C+ + I A + G +W I+SG + N + +W
Sbjct: 237 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW------IVSG------SEDNLVYIWNLQ 284
Query: 270 NMTKVGELQSSNSRILDLSQSPDGLTVATAGA--DETIRFWEA 310
V +LQ ++ + P +A+A D+TI+ W++
Sbjct: 285 TKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 327
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 100/219 (45%), Gaps = 16/219 (7%)
Query: 52 LQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHW 111
+ G +SV +S + + LA D +++W A K + + GH ++ +W+
Sbjct: 34 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS- 92
Query: 112 NGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIW 171
+ ++L S S DK++ DV S +K HS V ++ + NL+ SG D VRIW
Sbjct: 93 DSNLLVSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 151
Query: 172 ERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGI- 230
+ + + K L H V A+ ++ ++++ DG +IW+ G C+ +
Sbjct: 152 D---VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS---YDGLCRIWDTASGQCLKTLI 205
Query: 231 -DAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKY 268
D + ++++ + K IL A+ N L LW Y
Sbjct: 206 DDDNPPVSFVKFSPNGKYIL------AATLDNTLKLWDY 238
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 74/172 (43%), Gaps = 13/172 (7%)
Query: 140 IKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSP 199
+ H+ V +K+S G LAS D +++IW K++ + H G+ +AWS
Sbjct: 36 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAWSS 92
Query: 200 HQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQ-ICGLEWNRHHKEILSGHGFSASG 258
N+L + +D +KIW+V G C+ + + + +N I+SG F S
Sbjct: 93 DS-NLLVSAS--DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG-SFDES- 147
Query: 259 DGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEA 310
+ +W + L + + + + + DG + ++ D R W+
Sbjct: 148 ----VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 195
Score = 34.7 bits (78), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Query: 29 VLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWS-HDAKTLAVGYMDSKLQLWDA 87
+LA L L LW + GK K + Y ++S K + G D+ + +W+
Sbjct: 224 ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 283
Query: 88 ETSKLVRNLEGHHRRVATSSWNHWNGHILTSGS--KDKSI 125
+T ++V+ L+G H V S+ H +I+ S + DK+I
Sbjct: 284 QTKEIVQKLQG-HTDVVISTACHPTENIIASAALENDKTI 322
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 81.6 bits (200), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 71/283 (25%), Positives = 130/283 (45%), Gaps = 33/283 (11%)
Query: 40 LWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGH 99
+W +GK +K + G + V+WS D+ L D L++WD + K ++ L+GH
Sbjct: 55 IWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH 112
Query: 100 HRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLL 159
V ++N +++ SGS D+S+ DV+ + + + AHS V + ++ +G+L+
Sbjct: 113 SNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKT-LPAHSDPVSAVHFNRDGSLI 170
Query: 160 ASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIW 219
S D + RIW+ + K+L D V + +SP+ +LA D +K+W
Sbjct: 171 VSSSYDGLCRIWDTASGQCLKTL--IDDDNPPVSFVKFSPNGKYILA---ATLDNTLKLW 225
Query: 220 NVQKGTCI----------HGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYP 269
+ KG C+ + I A + G +W I+SG + N + +W
Sbjct: 226 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW------IVSG------SEDNLVYIWNLQ 273
Query: 270 NMTKVGELQSSNSRILDLSQSPDGLTVATAGA--DETIRFWEA 310
V +LQ ++ + P +A+A D+TI+ W++
Sbjct: 274 TKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 316
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 98/209 (46%), Gaps = 16/209 (7%)
Query: 62 TSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSK 121
+SV +S + + LA D +++W A K + + GH ++ +W+ + ++L S S
Sbjct: 33 SSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS-DSNLLVSASD 91
Query: 122 DKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKS 181
DK++ DV S +K HS V ++ + NL+ SG D VRIW+ + + K
Sbjct: 92 DKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD---VKTGKC 147
Query: 182 LHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGI--DAKAQICGL 239
L H V A+ ++ ++++ DG +IW+ G C+ + D + +
Sbjct: 148 LKTLPAHSDPVSAVHFNRDGSLIVSSS---YDGLCRIWDTASGQCLKTLIDDDNPPVSFV 204
Query: 240 EWNRHHKEILSGHGFSASGDGNKLCLWKY 268
+++ + K IL A+ N L LW Y
Sbjct: 205 KFSPNGKYIL------AATLDNTLKLWDY 227
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 74/172 (43%), Gaps = 13/172 (7%)
Query: 140 IKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSP 199
+ H+ V +K+S G LAS D +++IW K++ + H G+ +AWS
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAWSS 81
Query: 200 HQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQ-ICGLEWNRHHKEILSGHGFSASG 258
N+L + +D +KIW+V G C+ + + + +N I+SG F S
Sbjct: 82 DS-NLLVSAS--DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG-SFDES- 136
Query: 259 DGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEA 310
+ +W + L + + + + + DG + ++ D R W+
Sbjct: 137 ----VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 184
Score = 34.3 bits (77), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Query: 29 VLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWS-HDAKTLAVGYMDSKLQLWDA 87
+LA L L LW + GK K + Y ++S K + G D+ + +W+
Sbjct: 213 ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 272
Query: 88 ETSKLVRNLEGHHRRVATSSWNHWNGHILTSGS--KDKSI 125
+T ++V+ L+G H V S+ H +I+ S + DK+I
Sbjct: 273 QTKEIVQKLQG-HTDVVISTACHPTENIIASAALENDKTI 311
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 81.3 bits (199), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 71/286 (24%), Positives = 132/286 (46%), Gaps = 33/286 (11%)
Query: 37 VLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNL 96
++ +W +GK +K + G + V+WS D+ L D L++WD + K ++ L
Sbjct: 52 LIKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 109
Query: 97 EGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEG 156
+GH V ++N +++ SGS D+S+ DV+ + + + AHS V + ++ +G
Sbjct: 110 KGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKT-LPAHSDPVSAVHFNRDG 167
Query: 157 NLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCI 216
+L+ S D + RIW+ + K+L D V + +SP+ +LA D +
Sbjct: 168 SLIVSSSYDGLCRIWDTASGQCLKTL--IDDDNPPVSFVKFSPNGKYILA---ATLDNTL 222
Query: 217 KIWNVQKGTCI----------HGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLW 266
K+W+ KG C+ + I A + G +W I+SG + N + +W
Sbjct: 223 KLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW------IVSG------SEDNLVYIW 270
Query: 267 KYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGA--DETIRFWEA 310
V +LQ ++ + P +A+A D+TI+ W++
Sbjct: 271 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 316
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 100/219 (45%), Gaps = 16/219 (7%)
Query: 52 LQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHW 111
+ G +SV +S + + LA D +++W A K + + GH ++ +W+
Sbjct: 23 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS- 81
Query: 112 NGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIW 171
+ ++L S S DK++ DV S +K HS V ++ + NL+ SG D VRIW
Sbjct: 82 DSNLLVSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 140
Query: 172 ERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGI- 230
+ + + K L H V A+ ++ ++++ DG +IW+ G C+ +
Sbjct: 141 D---VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS---YDGLCRIWDTASGQCLKTLI 194
Query: 231 -DAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKY 268
D + ++++ + K IL A+ N L LW Y
Sbjct: 195 DDDNPPVSFVKFSPNGKYIL------AATLDNTLKLWDY 227
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 74/172 (43%), Gaps = 13/172 (7%)
Query: 140 IKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSP 199
+ H+ V +K+S G LAS D +++IW K++ + H G+ +AWS
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAWSS 81
Query: 200 HQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQ-ICGLEWNRHHKEILSGHGFSASG 258
N+L + +D +KIW+V G C+ + + + +N I+SG F S
Sbjct: 82 DS-NLLVSAS--DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG-SFDES- 136
Query: 259 DGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEA 310
+ +W + L + + + + + DG + ++ D R W+
Sbjct: 137 ----VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 184
Score = 34.7 bits (78), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Query: 29 VLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWS-HDAKTLAVGYMDSKLQLWDA 87
+LA L L LW + GK K + Y ++S K + G D+ + +W+
Sbjct: 213 ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 272
Query: 88 ETSKLVRNLEGHHRRVATSSWNHWNGHILTSGS--KDKSI 125
+T ++V+ L+G H V S+ H +I+ S + DK+I
Sbjct: 273 QTKEIVQKLQG-HTDVVISTACHPTENIIASAALENDKTI 311
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 81.3 bits (199), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 71/283 (25%), Positives = 130/283 (45%), Gaps = 33/283 (11%)
Query: 40 LWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGH 99
+W +GK +K + G + V+WS D+ L D L++WD + K ++ L+GH
Sbjct: 45 IWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH 102
Query: 100 HRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLL 159
V ++N +++ SGS D+S+ DV+ + + + AHS V + ++ +G+L+
Sbjct: 103 SNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKT-LPAHSDPVSAVHFNRDGSLI 160
Query: 160 ASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIW 219
S D + RIW+ + K+L D V + +SP+ +LA D +K+W
Sbjct: 161 VSSSYDGLCRIWDTASGQCLKTL--IDDDNPPVSFVKFSPNGKYILA---ATLDNTLKLW 215
Query: 220 NVQKGTCI----------HGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYP 269
+ KG C+ + I A + G +W I+SG + N + +W
Sbjct: 216 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW------IVSG------SEDNLVYIWNLQ 263
Query: 270 NMTKVGELQSSNSRILDLSQSPDGLTVATAGA--DETIRFWEA 310
V +LQ ++ + P +A+A D+TI+ W++
Sbjct: 264 TKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 306
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 100/219 (45%), Gaps = 16/219 (7%)
Query: 52 LQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHW 111
+ G +SV +S + + LA D +++W A K + + GH ++ +W+
Sbjct: 13 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS- 71
Query: 112 NGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIW 171
+ ++L S S DK++ DV S +K HS V ++ + NL+ SG D VRIW
Sbjct: 72 DSNLLVSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 130
Query: 172 ERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGI- 230
+ + + K L H V A+ ++ ++++ DG +IW+ G C+ +
Sbjct: 131 D---VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS---YDGLCRIWDTASGQCLKTLI 184
Query: 231 -DAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKY 268
D + ++++ + K IL A+ N L LW Y
Sbjct: 185 DDDNPPVSFVKFSPNGKYIL------AATLDNTLKLWDY 217
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 74/172 (43%), Gaps = 13/172 (7%)
Query: 140 IKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSP 199
+ H+ V +K+S G LAS D +++IW K++ + H G+ +AWS
Sbjct: 15 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAWSS 71
Query: 200 HQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQ-ICGLEWNRHHKEILSGHGFSASG 258
N+L + +D +KIW+V G C+ + + + +N I+SG F S
Sbjct: 72 DS-NLLVSAS--DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG-SFDES- 126
Query: 259 DGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEA 310
+ +W + L + + + + + DG + ++ D R W+
Sbjct: 127 ----VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 174
Score = 34.3 bits (77), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Query: 29 VLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWS-HDAKTLAVGYMDSKLQLWDA 87
+LA L L LW + GK K + Y ++S K + G D+ + +W+
Sbjct: 203 ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 262
Query: 88 ETSKLVRNLEGHHRRVATSSWNHWNGHILTSGS--KDKSI 125
+T ++V+ L+G H V S+ H +I+ S + DK+I
Sbjct: 263 QTKEIVQKLQG-HTDVVISTACHPTENIIASAALENDKTI 301
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 81.3 bits (199), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 71/286 (24%), Positives = 132/286 (46%), Gaps = 33/286 (11%)
Query: 37 VLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNL 96
++ +W +GK +K + G + V+WS D+ L D L++WD + K ++ L
Sbjct: 52 LIKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 109
Query: 97 EGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEG 156
+GH V ++N +++ SGS D+S+ DV+ + + + AHS V + ++ +G
Sbjct: 110 KGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKT-LPAHSDPVSAVHFNRDG 167
Query: 157 NLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCI 216
+L+ S D + RIW+ + K+L D V + +SP+ +LA D +
Sbjct: 168 SLIVSSSYDGLCRIWDTASGQCLKTL--IDDDNPPVSFVKFSPNGKYILA---ATLDNTL 222
Query: 217 KIWNVQKGTCI----------HGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLW 266
K+W+ KG C+ + I A + G +W I+SG + N + +W
Sbjct: 223 KLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW------IVSG------SEDNLVYIW 270
Query: 267 KYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGA--DETIRFWEA 310
V +LQ ++ + P +A+A D+TI+ W++
Sbjct: 271 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 316
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 100/219 (45%), Gaps = 16/219 (7%)
Query: 52 LQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHW 111
+ G +SV +S + + LA D +++W A K + + GH ++ +W+
Sbjct: 23 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS- 81
Query: 112 NGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIW 171
+ ++L S S DK++ DV S +K HS V ++ + NL+ SG D VRIW
Sbjct: 82 DSNLLVSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 140
Query: 172 ERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGI- 230
+ + + K L H V A+ ++ ++++ DG +IW+ G C+ +
Sbjct: 141 D---VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS---YDGLCRIWDTASGQCLKTLI 194
Query: 231 -DAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKY 268
D + ++++ + K IL A+ N L LW Y
Sbjct: 195 DDDNPPVSFVKFSPNGKYIL------AATLDNTLKLWDY 227
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 74/172 (43%), Gaps = 13/172 (7%)
Query: 140 IKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSP 199
+ H+ V +K+S G LAS D +++IW K++ + H G+ +AWS
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAWSS 81
Query: 200 HQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQ-ICGLEWNRHHKEILSGHGFSASG 258
N+L + +D +KIW+V G C+ + + + +N I+SG F S
Sbjct: 82 DS-NLLVSAS--DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG-SFDES- 136
Query: 259 DGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEA 310
+ +W + L + + + + + DG + ++ D R W+
Sbjct: 137 ----VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 184
Score = 34.7 bits (78), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Query: 29 VLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWS-HDAKTLAVGYMDSKLQLWDA 87
+LA L L LW + GK K + Y ++S K + G D+ + +W+
Sbjct: 213 ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 272
Query: 88 ETSKLVRNLEGHHRRVATSSWNHWNGHILTSGS--KDKSI 125
+T ++V+ L+G H V S+ H +I+ S + DK+I
Sbjct: 273 QTKEIVQKLQG-HTDVVISTACHPTENIIASAALENDKTI 311
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 81.3 bits (199), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 71/286 (24%), Positives = 132/286 (46%), Gaps = 33/286 (11%)
Query: 37 VLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNL 96
++ +W +GK +K + G + V+WS D+ L D L++WD + K ++ L
Sbjct: 51 LIKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 108
Query: 97 EGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEG 156
+GH V ++N +++ SGS D+S+ DV+ + + + AHS V + ++ +G
Sbjct: 109 KGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKT-LPAHSDPVSAVHFNRDG 166
Query: 157 NLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCI 216
+L+ S D + RIW+ + K+L D V + +SP+ +LA D +
Sbjct: 167 SLIVSSSYDGLCRIWDTASGQCLKTL--IDDDNPPVSFVKFSPNGKYILA---ATLDNTL 221
Query: 217 KIWNVQKGTCI----------HGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLW 266
K+W+ KG C+ + I A + G +W I+SG + N + +W
Sbjct: 222 KLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW------IVSG------SEDNLVYIW 269
Query: 267 KYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGA--DETIRFWEA 310
V +LQ ++ + P +A+A D+TI+ W++
Sbjct: 270 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 315
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 100/219 (45%), Gaps = 16/219 (7%)
Query: 52 LQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHW 111
+ G +SV +S + + LA D +++W A K + + GH ++ +W+
Sbjct: 22 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS- 80
Query: 112 NGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIW 171
+ ++L S S DK++ DV S +K HS V ++ + NL+ SG D VRIW
Sbjct: 81 DSNLLVSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 139
Query: 172 ERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGI- 230
+ + + K L H V A+ ++ ++++ DG +IW+ G C+ +
Sbjct: 140 D---VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS---YDGLCRIWDTASGQCLKTLI 193
Query: 231 -DAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKY 268
D + ++++ + K IL A+ N L LW Y
Sbjct: 194 DDDNPPVSFVKFSPNGKYIL------AATLDNTLKLWDY 226
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 74/172 (43%), Gaps = 13/172 (7%)
Query: 140 IKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSP 199
+ H+ V +K+S G LAS D +++IW K++ + H G+ +AWS
Sbjct: 24 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAWSS 80
Query: 200 HQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQ-ICGLEWNRHHKEILSGHGFSASG 258
N+L + +D +KIW+V G C+ + + + +N I+SG F S
Sbjct: 81 DS-NLLVSAS--DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG-SFDES- 135
Query: 259 DGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEA 310
+ +W + L + + + + + DG + ++ D R W+
Sbjct: 136 ----VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 183
Score = 34.7 bits (78), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Query: 29 VLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWS-HDAKTLAVGYMDSKLQLWDA 87
+LA L L LW + GK K + Y ++S K + G D+ + +W+
Sbjct: 212 ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 271
Query: 88 ETSKLVRNLEGHHRRVATSSWNHWNGHILTSGS--KDKSI 125
+T ++V+ L+G H V S+ H +I+ S + DK+I
Sbjct: 272 QTKEIVQKLQG-HTDVVISTACHPTENIIASAALENDKTI 310
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 81.3 bits (199), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 71/286 (24%), Positives = 132/286 (46%), Gaps = 33/286 (11%)
Query: 37 VLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNL 96
++ +W +GK +K + G + V+WS D+ L D L++WD + K ++ L
Sbjct: 46 LIKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 103
Query: 97 EGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEG 156
+GH V ++N +++ SGS D+S+ DV+ + + + AHS V + ++ +G
Sbjct: 104 KGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKT-LPAHSDPVSAVHFNRDG 161
Query: 157 NLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCI 216
+L+ S D + RIW+ + K+L D V + +SP+ +LA D +
Sbjct: 162 SLIVSSSYDGLCRIWDTASGQCLKTL--IDDDNPPVSFVKFSPNGKYILA---ATLDNTL 216
Query: 217 KIWNVQKGTCI----------HGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLW 266
K+W+ KG C+ + I A + G +W I+SG + N + +W
Sbjct: 217 KLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW------IVSG------SEDNLVYIW 264
Query: 267 KYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGA--DETIRFWEA 310
V +LQ ++ + P +A+A D+TI+ W++
Sbjct: 265 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 310
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 100/219 (45%), Gaps = 16/219 (7%)
Query: 52 LQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHW 111
+ G +SV +S + + LA D +++W A K + + GH ++ +W+
Sbjct: 17 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS- 75
Query: 112 NGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIW 171
+ ++L S S DK++ DV S +K HS V ++ + NL+ SG D VRIW
Sbjct: 76 DSNLLVSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 134
Query: 172 ERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGI- 230
+ + + K L H V A+ ++ ++++ DG +IW+ G C+ +
Sbjct: 135 D---VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS---YDGLCRIWDTASGQCLKTLI 188
Query: 231 -DAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKY 268
D + ++++ + K IL A+ N L LW Y
Sbjct: 189 DDDNPPVSFVKFSPNGKYIL------AATLDNTLKLWDY 221
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 74/172 (43%), Gaps = 13/172 (7%)
Query: 140 IKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSP 199
+ H+ V +K+S G LAS D +++IW K++ + H G+ +AWS
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAWSS 75
Query: 200 HQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQ-ICGLEWNRHHKEILSGHGFSASG 258
N+L + +D +KIW+V G C+ + + + +N I+SG F S
Sbjct: 76 DS-NLLVSAS--DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG-SFDES- 130
Query: 259 DGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEA 310
+ +W + L + + + + + DG + ++ D R W+
Sbjct: 131 ----VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 178
Score = 34.7 bits (78), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Query: 29 VLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWS-HDAKTLAVGYMDSKLQLWDA 87
+LA L L LW + GK K + Y ++S K + G D+ + +W+
Sbjct: 207 ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 266
Query: 88 ETSKLVRNLEGHHRRVATSSWNHWNGHILTSGS--KDKSI 125
+T ++V+ L+G H V S+ H +I+ S + DK+I
Sbjct: 267 QTKEIVQKLQG-HTDVVISTACHPTENIIASAALENDKTI 305
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 81.3 bits (199), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 71/283 (25%), Positives = 130/283 (45%), Gaps = 33/283 (11%)
Query: 40 LWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGH 99
+W +GK +K + G + V+WS D+ L D L++WD + K ++ L+GH
Sbjct: 52 IWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH 109
Query: 100 HRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLL 159
V ++N +++ SGS D+S+ DV+ + + + AHS V + ++ +G+L+
Sbjct: 110 SNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKT-LPAHSDPVSAVHFNRDGSLI 167
Query: 160 ASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIW 219
S D + RIW+ + K+L D V + +SP+ +LA D +K+W
Sbjct: 168 VSSSYDGLCRIWDTASGQCLKTL--IDDDNPPVSFVKFSPNGKYILA---ATLDNTLKLW 222
Query: 220 NVQKGTCI----------HGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYP 269
+ KG C+ + I A + G +W I+SG + N + +W
Sbjct: 223 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW------IVSG------SEDNLVYIWNLQ 270
Query: 270 NMTKVGELQSSNSRILDLSQSPDGLTVATAGA--DETIRFWEA 310
V +LQ ++ + P +A+A D+TI+ W++
Sbjct: 271 TKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 313
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 100/219 (45%), Gaps = 16/219 (7%)
Query: 52 LQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHW 111
+ G +SV +S + + LA D +++W A K + + GH ++ +W+
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS- 78
Query: 112 NGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIW 171
+ ++L S S DK++ DV S +K HS V ++ + NL+ SG D VRIW
Sbjct: 79 DSNLLVSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Query: 172 ERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGI- 230
+ + + K L H V A+ ++ ++++ DG +IW+ G C+ +
Sbjct: 138 D---VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTLI 191
Query: 231 -DAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKY 268
D + ++++ + K IL A+ N L LW Y
Sbjct: 192 DDDNPPVSFVKFSPNGKYIL------AATLDNTLKLWDY 224
Score = 34.7 bits (78), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Query: 29 VLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWS-HDAKTLAVGYMDSKLQLWDA 87
+LA L L LW + GK K + Y ++S K + G D+ + +W+
Sbjct: 210 ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 269
Query: 88 ETSKLVRNLEGHHRRVATSSWNHWNGHILTSGS--KDKSI 125
+T ++V+ L+G H V S+ H +I+ S + DK+I
Sbjct: 270 QTKEIVQKLQG-HTDVVISTACHPTENIIASAALENDKTI 308
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 81.3 bits (199), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 71/283 (25%), Positives = 130/283 (45%), Gaps = 33/283 (11%)
Query: 40 LWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGH 99
+W +GK +K + G + V+WS D+ L D L++WD + K ++ L+GH
Sbjct: 52 IWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH 109
Query: 100 HRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLL 159
V ++N +++ SGS D+S+ DV+ + + + AHS V + ++ +G+L+
Sbjct: 110 SNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGMCLKT-LPAHSDPVSAVHFNRDGSLI 167
Query: 160 ASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIW 219
S D + RIW+ + K+L D V + +SP+ +LA D +K+W
Sbjct: 168 VSSSYDGLCRIWDTASGQCLKTL--IDDDNPPVSFVKFSPNGKYILA---ATLDNTLKLW 222
Query: 220 NVQKGTCI----------HGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYP 269
+ KG C+ + I A + G +W I+SG + N + +W
Sbjct: 223 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW------IVSG------SEDNMVYIWNLQ 270
Query: 270 NMTKVGELQSSNSRILDLSQSPDGLTVATAGA--DETIRFWEA 310
V +LQ ++ + P +A+A D+TI+ W++
Sbjct: 271 TKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 313
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 100/220 (45%), Gaps = 16/220 (7%)
Query: 51 LLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNH 110
+ + G +SV +S + + LA D +++W A K + + GH ++ +W+
Sbjct: 19 MFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 78
Query: 111 WNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRI 170
+ ++L S S DK++ DV S +K HS V ++ + NL+ SG D VRI
Sbjct: 79 -DSNLLVSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 171 WERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGI 230
W+ + + L H V A+ ++ ++++ DG +IW+ G C+ +
Sbjct: 137 WD---VKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSS---YDGLCRIWDTASGQCLKTL 190
Query: 231 --DAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKY 268
D + ++++ + K IL A+ N L LW Y
Sbjct: 191 IDDDNPPVSFVKFSPNGKYIL------AATLDNTLKLWDY 224
Score = 35.0 bits (79), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Query: 29 VLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWS-HDAKTLAVGYMDSKLQLWDA 87
+LA L L LW + GK K + Y ++S K + G D+ + +W+
Sbjct: 210 ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNL 269
Query: 88 ETSKLVRNLEGHHRRVATSSWNHWNGHILTSGS--KDKSI 125
+T ++V+ L+G H V S+ H +I+ S + DK+I
Sbjct: 270 QTKEIVQKLQG-HTDVVISTACHPTENIIASAALENDKTI 308
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 81.3 bits (199), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 71/283 (25%), Positives = 130/283 (45%), Gaps = 33/283 (11%)
Query: 40 LWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGH 99
+W +GK +K + G + V+WS D+ L D L++WD + K ++ L+GH
Sbjct: 49 IWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH 106
Query: 100 HRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLL 159
V ++N +++ SGS D+S+ DV+ + + + AHS V + ++ +G+L+
Sbjct: 107 SNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKT-LPAHSDPVSAVHFNRDGSLI 164
Query: 160 ASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIW 219
S D + RIW+ + K+L D V + +SP+ +LA D +K+W
Sbjct: 165 VSSSYDGLCRIWDTASGQCLKTL--IDDDNPPVSFVKFSPNGKYILA---ATLDNTLKLW 219
Query: 220 NVQKGTCI----------HGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYP 269
+ KG C+ + I A + G +W I+SG + N + +W
Sbjct: 220 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW------IVSG------SEDNLVYIWNLQ 267
Query: 270 NMTKVGELQSSNSRILDLSQSPDGLTVATAGA--DETIRFWEA 310
V +LQ ++ + P +A+A D+TI+ W++
Sbjct: 268 TKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 310
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 100/219 (45%), Gaps = 16/219 (7%)
Query: 52 LQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHW 111
+ G +SV +S + + LA D +++W A K + + GH ++ +W+
Sbjct: 17 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS- 75
Query: 112 NGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIW 171
+ ++L S S DK++ DV S +K HS V ++ + NL+ SG D VRIW
Sbjct: 76 DSNLLVSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 134
Query: 172 ERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGI- 230
+ + + K L H V A+ ++ ++++ DG +IW+ G C+ +
Sbjct: 135 D---VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS---YDGLCRIWDTASGQCLKTLI 188
Query: 231 -DAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKY 268
D + ++++ + K IL A+ N L LW Y
Sbjct: 189 DDDNPPVSFVKFSPNGKYIL------AATLDNTLKLWDY 221
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 74/172 (43%), Gaps = 13/172 (7%)
Query: 140 IKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSP 199
+ H+ V +K+S G LAS D +++IW K++ + H G+ +AWS
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAWSS 75
Query: 200 HQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQ-ICGLEWNRHHKEILSGHGFSASG 258
N+L + +D +KIW+V G C+ + + + +N I+SG F S
Sbjct: 76 DS-NLLVSAS--DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG-SFDES- 130
Query: 259 DGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEA 310
+ +W + L + + + + + DG + ++ D R W+
Sbjct: 131 ----VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 178
Score = 34.3 bits (77), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Query: 29 VLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWS-HDAKTLAVGYMDSKLQLWDA 87
+LA L L LW + GK K + Y ++S K + G D+ + +W+
Sbjct: 207 ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 266
Query: 88 ETSKLVRNLEGHHRRVATSSWNHWNGHILTSGS--KDKSI 125
+T ++V+ L+G H V S+ H +I+ S + DK+I
Sbjct: 267 QTKEIVQKLQG-HTDVVISTACHPTENIIASAALENDKTI 305
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 81.3 bits (199), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 71/286 (24%), Positives = 132/286 (46%), Gaps = 33/286 (11%)
Query: 37 VLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNL 96
++ +W +GK +K + G + V+WS D+ L D L++WD + K ++ L
Sbjct: 47 LIKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 104
Query: 97 EGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEG 156
+GH V ++N +++ SGS D+S+ DV+ + + + AHS V + ++ +G
Sbjct: 105 KGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKT-LPAHSDPVSAVHFNRDG 162
Query: 157 NLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCI 216
+L+ S D + RIW+ + K+L D V + +SP+ +LA D +
Sbjct: 163 SLIVSSSYDGLCRIWDTASGQCLKTL--IDDDNPPVSFVKFSPNGKYILA---ATLDNTL 217
Query: 217 KIWNVQKGTCI----------HGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLW 266
K+W+ KG C+ + I A + G +W I+SG + N + +W
Sbjct: 218 KLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW------IVSG------SEDNLVYIW 265
Query: 267 KYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGA--DETIRFWEA 310
V +LQ ++ + P +A+A D+TI+ W++
Sbjct: 266 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 311
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 100/219 (45%), Gaps = 16/219 (7%)
Query: 52 LQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHW 111
+ G +SV +S + + LA D +++W A K + + GH ++ +W+
Sbjct: 18 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS- 76
Query: 112 NGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIW 171
+ ++L S S DK++ DV S +K HS V ++ + NL+ SG D VRIW
Sbjct: 77 DSNLLVSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 135
Query: 172 ERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGI- 230
+ + + K L H V A+ ++ ++++ DG +IW+ G C+ +
Sbjct: 136 D---VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS---YDGLCRIWDTASGQCLKTLI 189
Query: 231 -DAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKY 268
D + ++++ + K IL A+ N L LW Y
Sbjct: 190 DDDNPPVSFVKFSPNGKYIL------AATLDNTLKLWDY 222
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 74/172 (43%), Gaps = 13/172 (7%)
Query: 140 IKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSP 199
+ H+ V +K+S G LAS D +++IW K++ + H G+ +AWS
Sbjct: 20 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAWSS 76
Query: 200 HQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQ-ICGLEWNRHHKEILSGHGFSASG 258
N+L + +D +KIW+V G C+ + + + +N I+SG F S
Sbjct: 77 DS-NLLVSAS--DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG-SFDES- 131
Query: 259 DGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEA 310
+ +W + L + + + + + DG + ++ D R W+
Sbjct: 132 ----VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 179
Score = 34.7 bits (78), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Query: 29 VLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWS-HDAKTLAVGYMDSKLQLWDA 87
+LA L L LW + GK K + Y ++S K + G D+ + +W+
Sbjct: 208 ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 267
Query: 88 ETSKLVRNLEGHHRRVATSSWNHWNGHILTSGS--KDKSI 125
+T ++V+ L+G H V S+ H +I+ S + DK+I
Sbjct: 268 QTKEIVQKLQG-HTDVVISTACHPTENIIASAALENDKTI 306
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 71/286 (24%), Positives = 132/286 (46%), Gaps = 33/286 (11%)
Query: 37 VLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNL 96
++ +W +GK +K + G + V+WS D+ L D L++WD + K ++ L
Sbjct: 70 LIKIWGAYDGKFEKTIS--GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 127
Query: 97 EGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEG 156
+GH V ++N +++ SGS D+S+ DV+ + + + AHS V + ++ +G
Sbjct: 128 KGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKT-LPAHSDPVSAVHFNRDG 185
Query: 157 NLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCI 216
+L+ S D + RIW+ + K+L D V + +SP+ +LA D +
Sbjct: 186 SLIVSSSYDGLCRIWDTASGQCLKTL--IDDDNPPVSFVKFSPNGKYILA---ATLDNTL 240
Query: 217 KIWNVQKGTCI----------HGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLW 266
K+W+ KG C+ + I A + G +W I+SG + N + +W
Sbjct: 241 KLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW------IVSG------SEDNLVYIW 288
Query: 267 KYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGA--DETIRFWEA 310
V +LQ ++ + P +A+A D+TI+ W++
Sbjct: 289 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 334
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 98/209 (46%), Gaps = 16/209 (7%)
Query: 62 TSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSK 121
+SV +S + + LA D +++W A K + + GH ++ +W+ + ++L S S
Sbjct: 51 SSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS-DSNLLVSASD 109
Query: 122 DKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKS 181
DK++ DV S +K HS V ++ + NL+ SG D VRIW+ + + K
Sbjct: 110 DKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD---VKTGKC 165
Query: 182 LHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGI--DAKAQICGL 239
L H V A+ ++ ++++ DG +IW+ G C+ + D + +
Sbjct: 166 LKTLPAHSDPVSAVHFNRDGSLIVSSS---YDGLCRIWDTASGQCLKTLIDDDNPPVSFV 222
Query: 240 EWNRHHKEILSGHGFSASGDGNKLCLWKY 268
+++ + K IL A+ N L LW Y
Sbjct: 223 KFSPNGKYIL------AATLDNTLKLWDY 245
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 74/171 (43%), Gaps = 13/171 (7%)
Query: 140 IKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSP 199
+ H+ V +K+S G LAS D +++IW K++ + H G+ +AWS
Sbjct: 43 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAWSS 99
Query: 200 HQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQ-ICGLEWNRHHKEILSGHGFSASG 258
N+L + +D +KIW+V G C+ + + + +N I+SG F S
Sbjct: 100 DS-NLLVSAS--DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG-SFDES- 154
Query: 259 DGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWE 309
+ +W + L + + + + + DG + ++ D R W+
Sbjct: 155 ----VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 201
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Query: 29 VLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWS-HDAKTLAVGYMDSKLQLWDA 87
+LA L L LW + GK K + Y ++S K + G D+ + +W+
Sbjct: 231 ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 290
Query: 88 ETSKLVRNLEGHHRRVATSSWNHWNGHILTSGS--KDKSI 125
+T ++V+ L+G H V S+ H +I+ S + DK+I
Sbjct: 291 QTKEIVQKLQG-HTDVVISTACHPTENIIASAALENDKTI 329
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 71/286 (24%), Positives = 132/286 (46%), Gaps = 33/286 (11%)
Query: 37 VLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNL 96
++ +W +GK +K + G + V+WS D+ L D L++WD + K ++ L
Sbjct: 68 LIKIWGAYDGKFEKTIS--GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 125
Query: 97 EGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEG 156
+GH V ++N +++ SGS D+S+ DV+ + + + AHS V + ++ +G
Sbjct: 126 KGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKT-LPAHSDPVSAVHFNRDG 183
Query: 157 NLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCI 216
+L+ S D + RIW+ + K+L D V + +SP+ +LA D +
Sbjct: 184 SLIVSSSYDGLCRIWDTASGQCLKTL--IDDDNPPVSFVKFSPNGKYILA---ATLDNTL 238
Query: 217 KIWNVQKGTCI----------HGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLW 266
K+W+ KG C+ + I A + G +W I+SG + N + +W
Sbjct: 239 KLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW------IVSG------SEDNLVYIW 286
Query: 267 KYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGA--DETIRFWEA 310
V +LQ ++ + P +A+A D+TI+ W++
Sbjct: 287 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 332
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 98/209 (46%), Gaps = 16/209 (7%)
Query: 62 TSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSK 121
+SV +S + + LA D +++W A K + + GH ++ +W+ + ++L S S
Sbjct: 49 SSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS-DSNLLVSASD 107
Query: 122 DKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKS 181
DK++ DV S +K HS V ++ + NL+ SG D VRIW+ + + K
Sbjct: 108 DKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD---VKTGKC 163
Query: 182 LHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGI--DAKAQICGL 239
L H V A+ ++ ++++ DG +IW+ G C+ + D + +
Sbjct: 164 LKTLPAHSDPVSAVHFNRDGSLIVSSS---YDGLCRIWDTASGQCLKTLIDDDNPPVSFV 220
Query: 240 EWNRHHKEILSGHGFSASGDGNKLCLWKY 268
+++ + K IL A+ N L LW Y
Sbjct: 221 KFSPNGKYIL------AATLDNTLKLWDY 243
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 74/171 (43%), Gaps = 13/171 (7%)
Query: 140 IKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSP 199
+ H+ V +K+S G LAS D +++IW K++ + H G+ +AWS
Sbjct: 41 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAWSS 97
Query: 200 HQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQ-ICGLEWNRHHKEILSGHGFSASG 258
N+L + +D +KIW+V G C+ + + + +N I+SG F S
Sbjct: 98 DS-NLLVSAS--DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG-SFDES- 152
Query: 259 DGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWE 309
+ +W + L + + + + + DG + ++ D R W+
Sbjct: 153 ----VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 199
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Query: 29 VLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWS-HDAKTLAVGYMDSKLQLWDA 87
+LA L L LW + GK K + Y ++S K + G D+ + +W+
Sbjct: 229 ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 288
Query: 88 ETSKLVRNLEGHHRRVATSSWNHWNGHILTSGS--KDKSI 125
+T ++V+ L+G H V S+ H +I+ S + DK+I
Sbjct: 289 QTKEIVQKLQG-HTDVVISTACHPTENIIASAALENDKTI 327
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/283 (25%), Positives = 130/283 (45%), Gaps = 33/283 (11%)
Query: 40 LWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGH 99
+W +GK +K + G + V+WS D+ L D L++WD + K ++ L+GH
Sbjct: 52 IWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH 109
Query: 100 HRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLL 159
V ++N +++ SGS D+S+ DV+ + + + AHS V + ++ +G+L+
Sbjct: 110 SNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGMCLKT-LPAHSDPVSAVHFNRDGSLI 167
Query: 160 ASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIW 219
S D + RIW+ + K+L D V + +SP+ +LA D +K+W
Sbjct: 168 VSSSYDGLCRIWDTASGQCLKTL--IDDDNPPVSFVKFSPNGKYILA---ATLDNDLKLW 222
Query: 220 NVQKGTCI----------HGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYP 269
+ KG C+ + I A + G +W I+SG + N + +W
Sbjct: 223 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW------IVSG------SEDNMVYIWNLQ 270
Query: 270 NMTKVGELQSSNSRILDLSQSPDGLTVATAGA--DETIRFWEA 310
V +LQ ++ + P +A+A D+TI+ W++
Sbjct: 271 TKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 313
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 100/220 (45%), Gaps = 16/220 (7%)
Query: 51 LLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNH 110
+ + G +SV +S + + LA D +++W A K + + GH ++ +W+
Sbjct: 19 MFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 78
Query: 111 WNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRI 170
+ ++L S S DK++ DV S +K HS V ++ + NL+ SG D VRI
Sbjct: 79 -DSNLLVSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 171 WERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGI 230
W+ + + L H V A+ ++ ++++ DG +IW+ G C+ +
Sbjct: 137 WD---VKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSS---YDGLCRIWDTASGQCLKTL 190
Query: 231 --DAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKY 268
D + ++++ + K IL A+ N L LW Y
Sbjct: 191 IDDDNPPVSFVKFSPNGKYIL------AATLDNDLKLWDY 224
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 70/283 (24%), Positives = 130/283 (45%), Gaps = 33/283 (11%)
Query: 40 LWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGH 99
+W +GK +K + G + V+WS D+ L D L++WD + K ++ L+GH
Sbjct: 52 IWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH 109
Query: 100 HRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLL 159
V ++N +++ SGS D+S+ DV+ + + + AHS V + ++ +G+L+
Sbjct: 110 SNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKT-LPAHSDPVSAVHFNRDGSLI 167
Query: 160 ASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIW 219
S D + RIW+ + K+L D V + +SP+ +LA D +K+W
Sbjct: 168 VSSSYDGLCRIWDTASGQCLKTL--IDDDNPPVSFVKFSPNGKYILA---ATLDNTLKLW 222
Query: 220 NVQKGTCI----------HGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYP 269
+ KG C+ + I A + G +W I+SG + N + +W
Sbjct: 223 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW------IVSG------SEDNLVYIWNLQ 270
Query: 270 NMTKVGELQSSNSRILDLSQSPDGLTVATAGA--DETIRFWEA 310
V +LQ ++ + P +A+A D+TI+ +++
Sbjct: 271 TKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLYKS 313
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 100/219 (45%), Gaps = 16/219 (7%)
Query: 52 LQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHW 111
+ G +SV +S + + LA D +++W A K + + GH ++ +W+
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS- 78
Query: 112 NGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIW 171
+ ++L S S DK++ DV S +K HS V ++ + NL+ SG D VRIW
Sbjct: 79 DSNLLVSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Query: 172 ERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGI- 230
+ + + K L H V A+ ++ ++++ DG +IW+ G C+ +
Sbjct: 138 D---VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS---YDGLCRIWDTASGQCLKTLI 191
Query: 231 -DAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKY 268
D + ++++ + K IL A+ N L LW Y
Sbjct: 192 DDDNPPVSFVKFSPNGKYIL------AATLDNTLKLWDY 224
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 74/172 (43%), Gaps = 13/172 (7%)
Query: 140 IKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSP 199
+ H+ V +K+S G LAS D +++IW K++ + H G+ +AWS
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAWSS 78
Query: 200 HQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQ-ICGLEWNRHHKEILSGHGFSASG 258
N+L + +D +KIW+V G C+ + + + +N I+SG F S
Sbjct: 79 DS-NLLVSAS--DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG-SFDES- 133
Query: 259 DGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEA 310
+ +W + L + + + + + DG + ++ D R W+
Sbjct: 134 ----VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 181
Score = 35.0 bits (79), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Query: 29 VLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWS-HDAKTLAVGYMDSKLQLWDA 87
+LA L L LW + GK K + Y ++S K + G D+ + +W+
Sbjct: 210 ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 269
Query: 88 ETSKLVRNLEGHHRRVATSSWNHWNGHILTSGS--KDKSI 125
+T ++V+ L+G H V S+ H +I+ S + DK+I
Sbjct: 270 QTKEIVQKLQG-HTDVVISTACHPTENIIASAALENDKTI 308
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 70/283 (24%), Positives = 130/283 (45%), Gaps = 33/283 (11%)
Query: 40 LWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGH 99
+W +GK +K + G + V+WS D+ L D L++WD + K ++ L+GH
Sbjct: 52 IWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH 109
Query: 100 HRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLL 159
V ++N +++ SGS D+S+ DV+ + + + AHS V + ++ +G+L+
Sbjct: 110 SNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKT-LPAHSDPVSAVHFNRDGSLI 167
Query: 160 ASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIW 219
S D + RIW+ + K+L D V + +SP+ +LA D +K+W
Sbjct: 168 VSSSYDGLCRIWDTASGQCLKTL--IDDDNPPVSFVKFSPNGKYILA---ATLDNTLKLW 222
Query: 220 NVQKGTCI----------HGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYP 269
+ KG C+ + I A + G +W I+SG + N + +W
Sbjct: 223 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW------IVSG------SEDNLVYIWNLQ 270
Query: 270 NMTKVGELQSSNSRILDLSQSPDGLTVATAGA--DETIRFWEA 310
V +LQ ++ + P +A+A D+TI+ +++
Sbjct: 271 TKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLFKS 313
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 100/219 (45%), Gaps = 16/219 (7%)
Query: 52 LQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHW 111
+ G +SV +S + + LA D +++W A K + + GH ++ +W+
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS- 78
Query: 112 NGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIW 171
+ ++L S S DK++ DV S +K HS V ++ + NL+ SG D VRIW
Sbjct: 79 DSNLLVSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Query: 172 ERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGI- 230
+ + + K L H V A+ ++ ++++ DG +IW+ G C+ +
Sbjct: 138 D---VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTLI 191
Query: 231 -DAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKY 268
D + ++++ + K IL A+ N L LW Y
Sbjct: 192 DDDNPPVSFVKFSPNGKYIL------AATLDNTLKLWDY 224
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 74/172 (43%), Gaps = 13/172 (7%)
Query: 140 IKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSP 199
+ H+ V +K+S G LAS D +++IW K++ + H G+ +AWS
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAWSS 78
Query: 200 HQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQ-ICGLEWNRHHKEILSGHGFSASG 258
N+L + +D +KIW+V G C+ + + + +N I+SG F S
Sbjct: 79 DS-NLLVS--ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG-SFDES- 133
Query: 259 DGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEA 310
+ +W + L + + + + + DG + ++ D R W+
Sbjct: 134 ----VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 181
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Query: 29 VLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWS-HDAKTLAVGYMDSKLQLWDA 87
+LA L L LW + GK K + Y ++S K + G D+ + +W+
Sbjct: 210 ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 269
Query: 88 ETSKLVRNLEGHHRRVATSSWNHWNGHILTSGS--KDKSI 125
+T ++V+ L+G H V S+ H +I+ S + DK+I
Sbjct: 270 QTKEIVQKLQG-HTDVVISTACHPTENIIASAALENDKTI 308
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 77.8 bits (190), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 70/276 (25%), Positives = 131/276 (47%), Gaps = 27/276 (9%)
Query: 40 LWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGH 99
LW NG++ L + G V++S D +T+A D ++LW+ +L++ L GH
Sbjct: 83 LWN-RNGQL--LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGH 138
Query: 100 HRRVATSSWNHWNGHILTSGSKDKSII--NHDVRVSNNVTSCIKAHSGEVCGLKWSNEGN 157
V +++ +G + S S DK++ N + ++ +T HS V G+ +S +G
Sbjct: 139 SSSVWGVAFSP-DGQTIASASDDKTVKLWNRNGQLLQTLT----GHSSSVWGVAFSPDGQ 193
Query: 158 LLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIK 217
+AS DD V++W R + + L T H V+ +A+SP + + +D +K
Sbjct: 194 TIASASDDKTVKLWNR----NGQLLQTLTGHSSSVRGVAFSPDGQTIAS---ASDDKTVK 246
Query: 218 IWNVQKGTCIHGIDA-KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGE 276
+WN + G + + + + G+ + G +++ D + LW N +
Sbjct: 247 LWN-RNGQLLQTLTGHSSSVNGVAFRPD------GQTIASASDDKTVKLWNR-NGQLLQT 298
Query: 277 LQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFG 312
L +S + ++ SPDG T+A+A D+T++ W G
Sbjct: 299 LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG 334
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/249 (24%), Positives = 122/249 (48%), Gaps = 24/249 (9%)
Query: 64 VSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDK 123
V++S D +T+A D ++LW+ +L++ L GH V +++ +G + S S DK
Sbjct: 350 VAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDK 407
Query: 124 SII--NHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKS 181
++ N + ++ +T HS V G+ +S + +AS DD V++W R+ +
Sbjct: 408 TVKLWNRNGQLLQTLT----GHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN----GQL 459
Query: 182 LHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA-KAQICGLE 240
L T H V+ +A+SP + + +D +K+WN + G + + + + G+
Sbjct: 460 LQTLTGHSSSVRGVAFSPDGQTIAS---ASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVA 515
Query: 241 WNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAG 300
++ G +++ D + LW N + L +S + ++ SPDG T+A+A
Sbjct: 516 FSPD------GQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASAS 568
Query: 301 ADETIRFWE 309
+D+T++ W
Sbjct: 569 SDKTVKLWN 577
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 70/276 (25%), Positives = 130/276 (47%), Gaps = 27/276 (9%)
Query: 40 LWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGH 99
LW NG++ L + G V++ D +T+A D ++LW+ +L++ L GH
Sbjct: 247 LWN-RNGQL--LQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN-RNGQLLQTLTGH 302
Query: 100 HRRVATSSWNHWNGHILTSGSKDKSII--NHDVRVSNNVTSCIKAHSGEVCGLKWSNEGN 157
V +++ +G + S S DK++ N + + +T HS V G+ +S +G
Sbjct: 303 SSSVWGVAFSP-DGQTIASASDDKTVKLWNRNGQHLQTLT----GHSSSVWGVAFSPDGQ 357
Query: 158 LLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIK 217
+AS DD V++W R + + L T H V+ +A+SP + + +D +K
Sbjct: 358 TIASASDDKTVKLWNR----NGQLLQTLTGHSSSVRGVAFSPDGQTIAS---ASDDKTVK 410
Query: 218 IWNVQKGTCIHGIDA-KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGE 276
+WN + G + + + + G+ ++ + I S + D + LW N +
Sbjct: 411 LWN-RNGQLLQTLTGHSSSVWGVAFSPDDQTIAS------ASDDKTVKLWNR-NGQLLQT 462
Query: 277 LQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFG 312
L +S + ++ SPDG T+A+A D+T++ W G
Sbjct: 463 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG 498
Score = 74.7 bits (182), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 122/252 (48%), Gaps = 24/252 (9%)
Query: 64 VSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDK 123
V++S D +T+A D ++LW+ +L++ L GH V +++ +G + S S DK
Sbjct: 22 VAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSP-DGQTIASASDDK 79
Query: 124 SII--NHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKS 181
++ N + ++ +T HS V G+ +S +G +AS DD V++W R + +
Sbjct: 80 TVKLWNRNGQLLQTLT----GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR----NGQL 131
Query: 182 LHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA-KAQICGLE 240
L T H V +A+SP + + +D +K+WN + G + + + + G+
Sbjct: 132 LQTLTGHSSSVWGVAFSPDGQTIAS---ASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVA 187
Query: 241 WNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAG 300
++ G +++ D + LW N + L +S + ++ SPDG T+A+A
Sbjct: 188 FSPD------GQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASAS 240
Query: 301 ADETIRFWEAFG 312
D+T++ W G
Sbjct: 241 DDKTVKLWNRNG 252
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 120/252 (47%), Gaps = 24/252 (9%)
Query: 64 VSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDK 123
V++S D +T+A D ++LW+ L + L GH V +++ +G + S S DK
Sbjct: 309 VAFSPDGQTIASASDDKTVKLWNRNGQHL-QTLTGHSSSVWGVAFSP-DGQTIASASDDK 366
Query: 124 SII--NHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKS 181
++ N + ++ +T HS V G+ +S +G +AS DD V++W R+ +
Sbjct: 367 TVKLWNRNGQLLQTLT----GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN----GQL 418
Query: 182 LHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA-KAQICGLE 240
L T H V +A+SP + + +D +K+WN + G + + + + G+
Sbjct: 419 LQTLTGHSSSVWGVAFSPDDQTIAS---ASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVA 474
Query: 241 WNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAG 300
++ G +++ D + LW N + L +S + ++ SPDG T+A+A
Sbjct: 475 FSPD------GQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASAS 527
Query: 301 ADETIRFWEAFG 312
D+T++ W G
Sbjct: 528 DDKTVKLWNRNG 539
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 84/174 (48%), Gaps = 16/174 (9%)
Query: 140 IKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSP 199
++AHS V G+ +S +G +AS DD V++W R + + L T H V +A+SP
Sbjct: 12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNR----NGQLLQTLTGHSSSVWGVAFSP 67
Query: 200 HQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA-KAQICGLEWNRHHKEILSGHGFSASG 258
+ + +D +K+WN + G + + + + G+ ++ G +++
Sbjct: 68 DGQTIAS---ASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPD------GQTIASAS 117
Query: 259 DGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFG 312
D + LW N + L +S + ++ SPDG T+A+A D+T++ W G
Sbjct: 118 DDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG 170
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 72/285 (25%), Positives = 120/285 (42%), Gaps = 24/285 (8%)
Query: 38 LFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLE 97
L ++K E G+ KLL + +D ++S D +A D K+++WD+ T KLV +
Sbjct: 646 LQVFKAETGE--KLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYD 703
Query: 98 GHHRRVATSSWNHWNGH-ILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEG 156
H +V + + + H +L +GS D + D+ + + H+ V ++S +
Sbjct: 704 EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN-QKECRNTMFGHTNSVNHCRFSPDD 762
Query: 157 NLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWS----PHQVNVLATGGG-R 211
LLAS D +R+W+ + KS++ VK S P V V+
Sbjct: 763 ELLASCSADGTLRLWDVRSANERKSIN--------VKRFFLSSEDPPEDVEVIVKCCSWS 814
Query: 212 EDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEI----LSGHGFSASGDGNKLC--L 265
DG I + + I + + HH I S + A ++ C L
Sbjct: 815 ADGDKIIVAAKNKVLLFDIHTSGLLAEIH-TGHHSTIQYCDFSPYDHLAVIALSQYCVEL 873
Query: 266 WKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEA 310
W + KV + + S + + SPDG + TA D+TIR WE
Sbjct: 874 WNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWET 918
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/302 (20%), Positives = 116/302 (38%), Gaps = 46/302 (15%)
Query: 65 SWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLE-GHHRRVATSSWNHWNGHILTSGSKD- 122
SWS D + V +K+ L+D TS L+ + GHH + ++ ++ + + S+
Sbjct: 812 SWSADGDKIIVA-AKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYC 870
Query: 123 KSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKM------ 176
+ N D R+ V C + H V G+ +S +G+ + DD +R+WE K+
Sbjct: 871 VELWNIDSRL--KVADC-RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAI 927
Query: 177 ----------SSSKSLHRFTDHCGGVKALAWSPHQVNVLA---------------TGGGR 211
++++ D+ G++ +A Q++ L G
Sbjct: 928 VLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGD 987
Query: 212 EDGCIKIWNVQKGTCI-HGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPN 270
EDG IKI + G+ K + RH + G +S + + + +W +
Sbjct: 988 EDGAIKIIELPNNRVFSSGVGHKKAV------RHIQFTADGKTLISSSEDSVIQVWNWQT 1041
Query: 271 MTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDEDSVSHLAGLVSLK 330
V LQ+ + D D + + D T++ W + D H ++S
Sbjct: 1042 GDYVF-LQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCA 1099
Query: 331 TS 332
S
Sbjct: 1100 IS 1101
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 69/172 (40%), Gaps = 11/172 (6%)
Query: 140 IKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSP 199
++ H+ V +S +G +AS G D ++++ K + + L H V A+S
Sbjct: 618 VRPHTDAVYHACFSQDGQRIASCGADKTLQVF---KAETGEKLLDIKAHEDEVLCCAFSS 674
Query: 200 HQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGD 259
+ ++ +KIW+ G +H D ++ + N H S H A+G
Sbjct: 675 DDSYIATCSADKK---VKIWDSATGKLVHTYDEHSE----QVNCCHFTNKSNHLLLATGS 727
Query: 260 GNK-LCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEA 310
+ L LW + + + SPD +A+ AD T+R W+
Sbjct: 728 NDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDV 779
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 85/197 (43%), Gaps = 23/197 (11%)
Query: 37 VLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNL 96
V+ +W W+ G L + D++ L+ + D +++W+ T ++ R+
Sbjct: 1033 VIQVWNWQTGDYVFL---QAHQETVKDFRLLQDSRLLSWSF-DGTVKVWNVITGRIERDF 1088
Query: 97 EGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEG 156
H V + + + + +S S DK+ + + + +K H+G V +S +G
Sbjct: 1089 TCHQGTVLSCAISS-DATKFSSTSADKTAKIWSFDLLSPLHE-LKGHNGCVRCSAFSLDG 1146
Query: 157 NLLASGGDDNVVRIWERSKMSSSKSLHRF---------TDHCGGVKALAWSPHQVNVLAT 207
LLA+G D+ +RIW +S + LH H G V + +SP +++
Sbjct: 1147 ILLATGDDNGEIRIW---NVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSA 1203
Query: 208 GGGREDGCIKIWNVQKG 224
GG +K WNV G
Sbjct: 1204 GGY-----LKWWNVATG 1215
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 72/191 (37%), Gaps = 43/191 (22%)
Query: 133 SNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWE---------RSKMSSSKSLH 183
+N V S H V ++++ +G L S +D+V+++W ++ + K
Sbjct: 999 NNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFR 1058
Query: 184 RFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKG------TCIHGIDAKAQIC 237
D + L+WS DG +K+WNV G TC G I
Sbjct: 1059 LLQDS----RLLSWSF-------------DGTVKVWNVITGRIERDFTCHQGTVLSCAIS 1101
Query: 238 GLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVA 297
FS++ +W + ++ + EL+ N + + S DG+ +A
Sbjct: 1102 S-----------DATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLA 1150
Query: 298 TAGADETIRFW 308
T + IR W
Sbjct: 1151 TGDDNGEIRIW 1161
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 72/285 (25%), Positives = 120/285 (42%), Gaps = 24/285 (8%)
Query: 38 LFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLE 97
L ++K E G+ KLL + +D ++S D +A D K+++WD+ T KLV +
Sbjct: 639 LQVFKAETGE--KLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYD 696
Query: 98 GHHRRVATSSWNHWNGH-ILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEG 156
H +V + + + H +L +GS D + D+ + + H+ V ++S +
Sbjct: 697 EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN-QKECRNTMFGHTNSVNHCRFSPDD 755
Query: 157 NLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWS----PHQVNVLATGGG-R 211
LLAS D +R+W+ + KS++ VK S P V V+
Sbjct: 756 ELLASCSADGTLRLWDVRSANERKSIN--------VKRFFLSSEDPPEDVEVIVKCCSWS 807
Query: 212 EDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEI----LSGHGFSASGDGNKLC--L 265
DG I + + I + + HH I S + A ++ C L
Sbjct: 808 ADGDKIIVAAKNKVLLFDIHTSGLLAEIH-TGHHSTIQYCDFSPYDHLAVIALSQYCVEL 866
Query: 266 WKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEA 310
W + KV + + S + + SPDG + TA D+TIR WE
Sbjct: 867 WNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWET 911
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/302 (20%), Positives = 116/302 (38%), Gaps = 46/302 (15%)
Query: 65 SWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLE-GHHRRVATSSWNHWNGHILTSGSKD- 122
SWS D + V +K+ L+D TS L+ + GHH + ++ ++ + + S+
Sbjct: 805 SWSADGDKIIVA-AKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYC 863
Query: 123 KSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKM------ 176
+ N D R+ V C + H V G+ +S +G+ + DD +R+WE K+
Sbjct: 864 VELWNIDSRL--KVADC-RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAI 920
Query: 177 ----------SSSKSLHRFTDHCGGVKALAWSPHQVNVLA---------------TGGGR 211
++++ D+ G++ +A Q++ L G
Sbjct: 921 VLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGD 980
Query: 212 EDGCIKIWNVQKGTCI-HGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPN 270
EDG IKI + G+ K + RH + G +S + + + +W +
Sbjct: 981 EDGAIKIIELPNNRVFSSGVGHKKAV------RHIQFTADGKTLISSSEDSVIQVWNWQT 1034
Query: 271 MTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDEDSVSHLAGLVSLK 330
V LQ+ + D D + + D T++ W + D H ++S
Sbjct: 1035 GDYVF-LQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCA 1092
Query: 331 TS 332
S
Sbjct: 1093 IS 1094
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 69/172 (40%), Gaps = 11/172 (6%)
Query: 140 IKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSP 199
++ H+ V +S +G +AS G D ++++ K + + L H V A+S
Sbjct: 611 VRPHTDAVYHACFSQDGQRIASCGADKTLQVF---KAETGEKLLDIKAHEDEVLCCAFSS 667
Query: 200 HQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGD 259
+ ++ +KIW+ G +H D ++ + N H S H A+G
Sbjct: 668 DDSYIATCSADKK---VKIWDSATGKLVHTYDEHSE----QVNCCHFTNKSNHLLLATGS 720
Query: 260 GNK-LCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEA 310
+ L LW + + + SPD +A+ AD T+R W+
Sbjct: 721 NDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDV 772
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 85/197 (43%), Gaps = 23/197 (11%)
Query: 37 VLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNL 96
V+ +W W+ G L + D++ L+ + D +++W+ T ++ R+
Sbjct: 1026 VIQVWNWQTGDYVFL---QAHQETVKDFRLLQDSRLLSWSF-DGTVKVWNVITGRIERDF 1081
Query: 97 EGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEG 156
H V + + + + +S S DK+ + + + +K H+G V +S +G
Sbjct: 1082 TCHQGTVLSCAISS-DATKFSSTSADKTAKIWSFDLLSPLHE-LKGHNGCVRCSAFSLDG 1139
Query: 157 NLLASGGDDNVVRIWERSKMSSSKSLHRF---------TDHCGGVKALAWSPHQVNVLAT 207
LLA+G D+ +RIW +S + LH H G V + +SP +++
Sbjct: 1140 ILLATGDDNGEIRIW---NVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSA 1196
Query: 208 GGGREDGCIKIWNVQKG 224
GG +K WNV G
Sbjct: 1197 GGY-----LKWWNVATG 1208
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 72/191 (37%), Gaps = 43/191 (22%)
Query: 133 SNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWE---------RSKMSSSKSLH 183
+N V S H V ++++ +G L S +D+V+++W ++ + K
Sbjct: 992 NNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFR 1051
Query: 184 RFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKG------TCIHGIDAKAQIC 237
D + L+WS DG +K+WNV G TC G I
Sbjct: 1052 LLQDS----RLLSWSF-------------DGTVKVWNVITGRIERDFTCHQGTVLSCAIS 1094
Query: 238 GLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVA 297
FS++ +W + ++ + EL+ N + + S DG+ +A
Sbjct: 1095 S-----------DATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLA 1143
Query: 298 TAGADETIRFW 308
T + IR W
Sbjct: 1144 TGDDNGEIRIW 1154
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 68/321 (21%), Positives = 143/321 (44%), Gaps = 31/321 (9%)
Query: 5 ARILDAPYLMEDYYSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSV 64
+R++ P+ Y++ + G+ + + L ++K E G+ KLL++ +D
Sbjct: 613 SRLVVRPHTDAVYHACFSEDGQR-IASCGADKTLQVFKAETGE--KLLEIKAHEDEVLCC 669
Query: 65 SWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGH-ILTSGSKDK 123
++S D + +A +D K+++W++ T +LV + H +V + + + H +L +GS D
Sbjct: 670 AFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDC 729
Query: 124 SIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLH 183
+ D+ + + H+ V ++S + LLAS D +++W+ + + KS++
Sbjct: 730 FLKLWDLN-QKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSIN 788
Query: 184 --RF--------TDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQK----GTCIHG 229
+F D VK +WS ++ + I ++++ G G
Sbjct: 789 VKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNK----IFLFDIHTSGLLGEIHTG 844
Query: 230 IDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQ 289
+ Q C ++H +++ + LW + +KV + + S + +
Sbjct: 845 HHSTIQYCDFS-PQNHLAVVALSQYCVE-------LWNTDSRSKVADCRGHLSWVHGVMF 896
Query: 290 SPDGLTVATAGADETIRFWEA 310
SPDG + T+ D+TIR WE
Sbjct: 897 SPDGSSFLTSSDDQTIRLWET 917
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 75/184 (40%), Gaps = 19/184 (10%)
Query: 132 VSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGG 191
++N ++ H+ V +S +G +AS G D ++++ K + + L H
Sbjct: 609 ITNLSRLVVRPHTDAVYHACFSEDGQRIASCGADKTLQVF---KAETGEKLLEIKAHEDE 665
Query: 192 VKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQ---ICGLEWNRHHKEI 248
V A+S +AT D +KIWN G +H D ++ C + HH +
Sbjct: 666 VLCCAFSTDD-RFIATCSV--DKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLL 722
Query: 249 LSGHG--FSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIR 306
+G F D N+ K T G S N SPD +A+ AD T++
Sbjct: 723 ATGSSDCFLKLWDLNQ----KECRNTMFGHTNSVNH----CRFSPDDKLLASCSADGTLK 774
Query: 307 FWEA 310
W+A
Sbjct: 775 LWDA 778
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 87/194 (44%), Gaps = 20/194 (10%)
Query: 52 LQVPGEDD--YPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLE-GHHRRVATSSW 108
L+ P ED SWS D + V +K+ L+D TS L+ + GHH + +
Sbjct: 796 LEDPQEDMEVIVKCCSWSADGARIMVA-AKNKIFLFDIHTSGLLGEIHTGHHSTIQYCDF 854
Query: 109 NHWNGHILTSGSKD-KSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNV 167
+ N + + S+ + N D R + V C + H V G+ +S +G+ + DD
Sbjct: 855 SPQNHLAVVALSQYCVELWNTDSR--SKVADC-RGHLSWVHGVMFSPDGSSFLTSSDDQT 911
Query: 168 VRIWERSKM--SSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGT 225
+R+WE K+ +S+ L + D + + ++V VLA R +++ N + G
Sbjct: 912 IRLWETKKVCKNSAVMLKQEVD-------VVFQENEVMVLAVDHIRR---LQLINGRTGQ 961
Query: 226 CIHGIDAKAQICGL 239
+ +A+ C L
Sbjct: 962 IDYLTEAQVSCCCL 975
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 83/208 (39%), Gaps = 56/208 (26%)
Query: 64 VSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATS---------SWNH---- 110
+ ++ D KTL D+++Q+W+ + K + L GH V SW+
Sbjct: 1015 IQFTADEKTLISSSDDAEIQVWNWQLDKCIF-LRGHQETVKDFRLLKNSRLLSWSFDGTV 1073
Query: 111 --WNGHILTSGSKDKSIINHD-----VRVSNNVTSC----------------------IK 141
WN + +G+K+K + H +S++ T ++
Sbjct: 1074 KVWN---IITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELR 1130
Query: 142 AHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSK-----MSSSKSLHRFTDHCGGVKALA 196
H+G V +S + LLA+G D+ +RIW S + + S H G V L
Sbjct: 1131 GHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLC 1190
Query: 197 WSPHQVNVLATGGGREDGCIKIWNVQKG 224
+SP +++ GG IK WNV G
Sbjct: 1191 FSPDGKMLISAGGY-----IKWWNVVTG 1213
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 39/192 (20%), Positives = 69/192 (35%), Gaps = 43/192 (22%)
Query: 132 VSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWE---------RSKMSSSKSL 182
V+N + H V ++++ + L S DD +++W R + K
Sbjct: 997 VNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCIFLRGHQETVKDF 1056
Query: 183 HRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWN 242
+ + L+WS DG +K+WN+ I G K +C
Sbjct: 1057 RLLKNS----RLLSWSF-------------DGTVKVWNI-----ITGNKEKDFVC----- 1089
Query: 243 RHHKEILS------GHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTV 296
H +LS FS++ +W + + + EL+ N + + S D +
Sbjct: 1090 -HQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLL 1148
Query: 297 ATAGADETIRFW 308
AT + IR W
Sbjct: 1149 ATGDDNGEIRIW 1160
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 96/195 (49%), Gaps = 21/195 (10%)
Query: 96 LEGHHRRVATSSWN-HWNGHILTSGSKDKSIINHDVRVSNNVTSCIKA------HSGEVC 148
L GH + SWN + NG++L S S D +I D+ + I A H+ V
Sbjct: 177 LRGHQKEGYGLSWNPNLNGYLL-SASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVE 235
Query: 149 GLKWSN-EGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLAT 207
+ W +L S DD + IW+ ++SK H H V L+++P+ +LAT
Sbjct: 236 DVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILAT 295
Query: 208 GGGREDGCIKIWNVQKGTC-IHGIDA-KAQICGLEWNRHHKEILSGHGFSASGDGNKLCL 265
G D + +W+++ +H ++ K +I ++W+ H++ IL ++SG +L +
Sbjct: 296 GSA--DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETIL-----ASSGTDRRLHV 348
Query: 266 WKYPNMTKVGELQSS 280
W +++K+GE QS+
Sbjct: 349 W---DLSKIGEEQST 360
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 75/161 (46%), Gaps = 17/161 (10%)
Query: 79 DSKLQLWDAE---TSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNN 135
D KL +WD TSK ++ H V S+N ++ IL +GS DK++ D+R
Sbjct: 253 DQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL 312
Query: 136 VTSCIKAHSGEVCGLKWS-NEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTD------- 187
++H E+ ++WS + +LAS G D + +W+ SK+ +S D
Sbjct: 313 KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLF 372
Query: 188 ----HCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKG 224
H + +W+P++ ++ + ED +++W + +
Sbjct: 373 IHGGHTAKISDFSWNPNEPWIICSVS--EDNIMQVWQMAEN 411
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 15/118 (12%)
Query: 73 LAVGYMDSKLQLWDAETSKL-VRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVR 131
LA G D + LWD KL + + E H + W+ N IL S D+ + D+
Sbjct: 293 LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 352
Query: 132 VSNNVTSCIKA-------------HSGEVCGLKWS-NEGNLLASGGDDNVVRIWERSK 175
S A H+ ++ W+ NE ++ S +DN++++W+ ++
Sbjct: 353 KIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 40/187 (21%), Positives = 74/187 (39%), Gaps = 27/187 (14%)
Query: 143 HSGEVCGLKWSNEGN-LLASGGDDNVVRIWERSKMSSSKSLH-------RFTDHCGGVKA 194
H GEV ++ + ++A+ + V +++ +K S R H
Sbjct: 127 HEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYG 186
Query: 195 LAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHG-IDAKAQICG-------LEWNRHHK 246
L+W+P+ L + +D I +W++ H IDAK G + W+ H+
Sbjct: 187 LSWNPNLNGYLLSAS--DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHE 244
Query: 247 EILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILD---LSQSP-DGLTVATAGAD 302
+ F + D KL +W N + ++ + LS +P +AT AD
Sbjct: 245 SL-----FGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSAD 299
Query: 303 ETIRFWE 309
+T+ W+
Sbjct: 300 KTVALWD 306
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 96/195 (49%), Gaps = 21/195 (10%)
Query: 96 LEGHHRRVATSSWN-HWNGHILTSGSKDKSIINHDVRVSNNVTSCIKA------HSGEVC 148
L GH + SWN + NG++L S S D +I D+ + I A H+ V
Sbjct: 179 LRGHQKEGYGLSWNPNLNGYLL-SASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVE 237
Query: 149 GLKWSN-EGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLAT 207
+ W +L S DD + IW+ ++SK H H V L+++P+ +LAT
Sbjct: 238 DVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILAT 297
Query: 208 GGGREDGCIKIWNVQKGTC-IHGIDA-KAQICGLEWNRHHKEILSGHGFSASGDGNKLCL 265
G D + +W+++ +H ++ K +I ++W+ H++ IL ++SG +L +
Sbjct: 298 GSA--DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETIL-----ASSGTDRRLHV 350
Query: 266 WKYPNMTKVGELQSS 280
W +++K+GE QS+
Sbjct: 351 W---DLSKIGEEQST 362
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 75/161 (46%), Gaps = 17/161 (10%)
Query: 79 DSKLQLWDAE---TSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNN 135
D KL +WD TSK ++ H V S+N ++ IL +GS DK++ D+R
Sbjct: 255 DQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL 314
Query: 136 VTSCIKAHSGEVCGLKWS-NEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTD------- 187
++H E+ ++WS + +LAS G D + +W+ SK+ +S D
Sbjct: 315 KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLF 374
Query: 188 ----HCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKG 224
H + +W+P++ ++ + ED +++W + +
Sbjct: 375 IHGGHTAKISDFSWNPNEPWIICSVS--EDNIMQVWQMAEN 413
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 15/118 (12%)
Query: 73 LAVGYMDSKLQLWDAETSKL-VRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVR 131
LA G D + LWD KL + + E H + W+ N IL S D+ + D+
Sbjct: 295 LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 354
Query: 132 VSNNVTSCIKA-------------HSGEVCGLKWS-NEGNLLASGGDDNVVRIWERSK 175
S A H+ ++ W+ NE ++ S +DN++++W+ ++
Sbjct: 355 KIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 412
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 55/138 (39%), Gaps = 19/138 (13%)
Query: 184 RFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHG-IDAKAQICG---- 238
R H L+W+P+ L + +D I +W++ H IDAK G
Sbjct: 178 RLRGHQKEGYGLSWNPNLNGYLLSAS--DDHTICLWDINATPKEHRVIDAKNIFTGHTAV 235
Query: 239 ---LEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILD---LSQSP- 291
+ W+ H+ + F + D KL +W N + ++ + LS +P
Sbjct: 236 VEDVAWHLLHESL-----FGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPY 290
Query: 292 DGLTVATAGADETIRFWE 309
+AT AD+T+ W+
Sbjct: 291 SEFILATGSADKTVALWD 308
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 96/195 (49%), Gaps = 21/195 (10%)
Query: 96 LEGHHRRVATSSWN-HWNGHILTSGSKDKSIINHDVRVSNNVTSCIKA------HSGEVC 148
L GH + SWN + NG++L S S D +I D+ + I A H+ V
Sbjct: 181 LRGHQKEGYGLSWNPNLNGYLL-SASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVE 239
Query: 149 GLKWSN-EGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLAT 207
+ W +L S DD + IW+ ++SK H H V L+++P+ +LAT
Sbjct: 240 DVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILAT 299
Query: 208 GGGREDGCIKIWNVQKGTC-IHGIDA-KAQICGLEWNRHHKEILSGHGFSASGDGNKLCL 265
G D + +W+++ +H ++ K +I ++W+ H++ IL ++SG +L +
Sbjct: 300 GSA--DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETIL-----ASSGTDRRLHV 352
Query: 266 WKYPNMTKVGELQSS 280
W +++K+GE QS+
Sbjct: 353 W---DLSKIGEEQST 364
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 74/158 (46%), Gaps = 17/158 (10%)
Query: 79 DSKLQLWDAE---TSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNN 135
D KL +WD TSK ++ H V S+N ++ IL +GS DK++ D+R
Sbjct: 257 DQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL 316
Query: 136 VTSCIKAHSGEVCGLKWS-NEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTD------- 187
++H E+ ++WS + +LAS G D + +W+ SK+ +S D
Sbjct: 317 KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLF 376
Query: 188 ----HCGGVKALAWSPHQVNVLATGGGREDGCIKIWNV 221
H + +W+P++ ++ + ED +++W +
Sbjct: 377 IHGGHTAKISDFSWNPNEPWIICSVS--EDNIMQVWQM 412
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 15/118 (12%)
Query: 73 LAVGYMDSKLQLWDAETSKL-VRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVR 131
LA G D + LWD KL + + E H + W+ N IL S D+ + D+
Sbjct: 297 LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 356
Query: 132 VSNNVTSCIKA-------------HSGEVCGLKWS-NEGNLLASGGDDNVVRIWERSK 175
S A H+ ++ W+ NE ++ S +DN++++W+ ++
Sbjct: 357 KIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 414
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 55/138 (39%), Gaps = 19/138 (13%)
Query: 184 RFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHG-IDAKAQICG---- 238
R H L+W+P+ L + +D I +W++ H IDAK G
Sbjct: 180 RLRGHQKEGYGLSWNPNLNGYLLSAS--DDHTICLWDINATPKEHRVIDAKNIFTGHTAV 237
Query: 239 ---LEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILD---LSQSP- 291
+ W+ H+ + F + D KL +W N + ++ + LS +P
Sbjct: 238 VEDVAWHLLHESL-----FGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPY 292
Query: 292 DGLTVATAGADETIRFWE 309
+AT AD+T+ W+
Sbjct: 293 SEFILATGSADKTVALWD 310
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 94/194 (48%), Gaps = 21/194 (10%)
Query: 96 LEGHHRRVATSSWN-HWNGHILTSGSKDKSIINHDVRVSN------NVTSCIKAHSGEVC 148
L GH + SWN + +GH+L S S D +I D+ + + H+ V
Sbjct: 173 LRGHQKEGYGLSWNPNLSGHLL-SASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVE 231
Query: 149 GLKWSN-EGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLAT 207
+ W +L S DD + IW+ ++SK H H V L+++P+ +LAT
Sbjct: 232 DVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILAT 291
Query: 208 GGGREDGCIKIWNVQKGTC-IHGIDA-KAQICGLEWNRHHKEILSGHGFSASGDGNKLCL 265
G D + +W+++ +H ++ K +I ++W+ H++ IL ++SG +L +
Sbjct: 292 GSA--DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETIL-----ASSGTDRRLNV 344
Query: 266 WKYPNMTKVGELQS 279
W +++K+GE QS
Sbjct: 345 W---DLSKIGEEQS 355
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 76/160 (47%), Gaps = 17/160 (10%)
Query: 79 DSKLQLWDAE---TSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNN 135
D KL +WD TSK +++ H V S+N ++ IL +GS DK++ D+R
Sbjct: 249 DQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL 308
Query: 136 VTSCIKAHSGEVCGLKWS-NEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTD------- 187
++H E+ ++WS + +LAS G D + +W+ SK+ +S D
Sbjct: 309 KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLF 368
Query: 188 ----HCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQK 223
H + +W+P++ V+ + ED +++W + +
Sbjct: 369 IHGGHTAKISDFSWNPNEPWVICSVS--EDNIMQVWQMAE 406
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 95/211 (45%), Gaps = 34/211 (16%)
Query: 116 LTSGSKDKSIINHDVRVSNNVTSC--------IKAHSGEVCGLKWSNEGNLLASGGDDNV 167
+ S S+DK++++ + + C ++ HS V + SN GN S D+
Sbjct: 31 VVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSAFVSDVALSNNGNFAVSASWDHS 90
Query: 168 VRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCI 227
+R+W + + + ++F H V ++A+SP +++ GGR D +++WNV KG C+
Sbjct: 91 LRLW---NLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVS--GGR-DNALRVWNV-KGECM 143
Query: 228 HGIDAKAQICGLEWNRHHKEILSGHGFSASGDG---------NKLCLWKYPNMTKVGELQ 278
H + A H + +S FS S D N + +W V +L+
Sbjct: 144 HTLSRGA----------HTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLK 193
Query: 279 SSNSRILDLSQSPDGLTVATAGADETIRFWE 309
+ + ++ SPDG A++ D R W+
Sbjct: 194 GHTNYVTSVTVSPDGSLCASSDKDGVARLWD 224
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/264 (21%), Positives = 116/264 (43%), Gaps = 21/264 (7%)
Query: 53 QVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWN 112
++ G + + V+ S++ D L+LW+ + + GH + V + +++ N
Sbjct: 62 RLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDN 121
Query: 113 GHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSN--EGNLLASGGDDNVVRI 170
I+ SG +D ++ +V+ T AH+ V +++S + ++ SGG DN+V++
Sbjct: 122 RQIV-SGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKV 180
Query: 171 WERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGI 230
W+ +++ + + H V ++ SP + +DG ++W++ KG + +
Sbjct: 181 WD---LATGRLVTDLKGHTNYVTSVTVSP---DGSLCASSDKDGVARLWDLTKGEALSEM 234
Query: 231 DAKA---QICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRI--- 284
A A QIC NR+ + G NK + + E Q S +
Sbjct: 235 AAGAPINQIC-FSPNRYWMCAATEKGIRIFDLENKDII-----VELAPEHQGSKKIVPEC 288
Query: 285 LDLSQSPDGLTVATAGADETIRFW 308
+ ++ S DG T+ + D IR W
Sbjct: 289 VSIAWSADGSTLYSGYTDNVIRVW 312
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 55/137 (40%), Gaps = 13/137 (9%)
Query: 43 WENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHH-- 100
W+ + + + G +Y TSV+ S D A D +LWD + + +
Sbjct: 181 WDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGAPI 240
Query: 101 RRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSG------EVCGLKWSN 154
++ S +W + +K I D+ + + H G E + WS
Sbjct: 241 NQICFSPNRYW-----MCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSA 295
Query: 155 EGNLLASGGDDNVVRIW 171
+G+ L SG DNV+R+W
Sbjct: 296 DGSTLYSGYTDNVIRVW 312
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 65/144 (45%), Gaps = 13/144 (9%)
Query: 38 LFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLE 97
L LW +NG+ + + G SV++S D + + G D+ L++W+ + +
Sbjct: 91 LRLWNLQNGQCQ--YKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSR 148
Query: 98 GHHR------RVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLK 151
G H R + S + ++ SG D + D+ VT +K H+ V +
Sbjct: 149 GAHTDWVSCVRFSPS----LDAPVIVSGGWDNLVKVWDLATGRLVTD-LKGHTNYVTSVT 203
Query: 152 WSNEGNLLASGGDDNVVRIWERSK 175
S +G+L AS D V R+W+ +K
Sbjct: 204 VSPDGSLCASSDKDGVARLWDLTK 227
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 96/214 (44%), Gaps = 22/214 (10%)
Query: 55 PGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGH 114
P D Y SV +S D K LA G D +++WD E K+V L+GH + + + + +G
Sbjct: 120 PSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDY-FPSGD 178
Query: 115 ILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERS 174
L SGS D+++ D+R + + + G +G +A+G D VR+W+
Sbjct: 179 KLVSGSGDRTVRIWDLR-TGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSE 237
Query: 175 KMSSSKSL----HRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQK------- 223
+ L T H V ++ ++ +V++ G D +K+WN+Q
Sbjct: 238 TGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVS---GSLDRSVKLWNLQNANNKSDS 294
Query: 224 -----GTC-IHGIDAKAQICGLEWNRHHKEILSG 251
GTC + I K + + ++ + ILSG
Sbjct: 295 KTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSG 328
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 72/171 (42%), Gaps = 23/171 (13%)
Query: 29 VLAVALGPVLFLWKWENGKVKKLLQVPGED-----DYPTSVSWSHDAKTLAVGYMDSKLQ 83
+ A +L + +W E G + + L E D SV ++ D +++ G +D ++
Sbjct: 222 IAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVK 281
Query: 84 LWDAETSKLVRNLEGH-----------HRRVATSSWNHWNGHILTSGSKDKSIINHDVRV 132
LW+ + + + + H+ S N + SGSKD+ ++ D +
Sbjct: 282 LWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK- 340
Query: 133 SNNVTSCIKAHSGEVCGLKWSN------EGNLLASGGDDNVVRIWERSKMS 177
S N ++ H V + +N E N+ A+G D RIW+ K++
Sbjct: 341 SGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKIA 391
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 80/191 (41%), Gaps = 40/191 (20%)
Query: 143 HSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGG----------- 191
H+ VC +K+SN+G LA+G + + + ++S + R +D
Sbjct: 63 HTSVVCCVKFSNDGEYLATGCN----KTTQVYRVSDGSLVARLSDDSAANKDPENLNTSS 118
Query: 192 -------VKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQ-ICGLEWNR 243
++++ +SP LATG ED I+IW+++ + + Q I L++
Sbjct: 119 SPSSDLYIRSVCFSPDG-KFLATGA--EDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP 175
Query: 244 HHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQ---SSNSRILDLSQSP-DGLTVATA 299
+++SG G + +W + G+ S + ++ SP DG +A
Sbjct: 176 SGDKLVSGSG------DRTVRIWDL----RTGQCSLTLSIEDGVTTVAVSPGDGKYIAAG 225
Query: 300 GADETIRFWEA 310
D +R W++
Sbjct: 226 SLDRAVRVWDS 236
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 94/195 (48%), Gaps = 21/195 (10%)
Query: 96 LEGHHRRVATSSWN-HWNGHILTSGSKDKSIINHDVRVSN------NVTSCIKAHSGEVC 148
L GH + SWN + +GH+L S S D ++ D+ + + HS V
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLL-SASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVE 233
Query: 149 GLKWSN-EGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLAT 207
+ W +L S DD + IW+ ++SK H H V L+++P+ +LAT
Sbjct: 234 DVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILAT 293
Query: 208 GGGREDGCIKIWNVQKGTC-IHGIDA-KAQICGLEWNRHHKEILSGHGFSASGDGNKLCL 265
G D + +W+++ +H ++ K +I + W+ H++ IL ++SG +L +
Sbjct: 294 GSA--DKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETIL-----ASSGTDRRLNV 346
Query: 266 WKYPNMTKVGELQSS 280
W +++K+GE QS+
Sbjct: 347 W---DLSKIGEEQSA 358
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 74/160 (46%), Gaps = 17/160 (10%)
Query: 79 DSKLQLWDAE---TSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNN 135
D KL +WD TSK ++ H V S+N ++ IL +GS DK++ D+R
Sbjct: 251 DQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL 310
Query: 136 VTSCIKAHSGEVCGLKWS-NEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTD------- 187
++H E+ + WS + +LAS G D + +W+ SK+ +S D
Sbjct: 311 KLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLF 370
Query: 188 ----HCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQK 223
H + +W+P++ V+ + ED ++IW + +
Sbjct: 371 IHGGHTAKISDFSWNPNEPWVICSVS--EDNIMQIWQMAE 408
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 15/118 (12%)
Query: 73 LAVGYMDSKLQLWDAETSKL-VRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVR 131
LA G D + LWD KL + E H + W+ N IL S D+ + D+
Sbjct: 291 LATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLS 350
Query: 132 VSNNVTSCIKA-------------HSGEVCGLKWS-NEGNLLASGGDDNVVRIWERSK 175
S A H+ ++ W+ NE ++ S +DN+++IW+ ++
Sbjct: 351 KIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAE 408
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 94/195 (48%), Gaps = 21/195 (10%)
Query: 96 LEGHHRRVATSSWN-HWNGHILTSGSKDKSIINHDVRVSN------NVTSCIKAHSGEVC 148
L GH + SWN + +GH+L S S D ++ D+ + + HS V
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLL-SASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVE 233
Query: 149 GLKWSN-EGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLAT 207
+ W +L S DD + IW+ ++SK H H V L+++P+ +LAT
Sbjct: 234 DVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILAT 293
Query: 208 GGGREDGCIKIWNVQKGTC-IHGIDA-KAQICGLEWNRHHKEILSGHGFSASGDGNKLCL 265
G D + +W+++ +H ++ K +I + W+ H++ IL ++SG +L +
Sbjct: 294 GSA--DKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETIL-----ASSGTDRRLNV 346
Query: 266 WKYPNMTKVGELQSS 280
W +++K+GE QS+
Sbjct: 347 W---DLSKIGEEQSA 358
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 71/156 (45%), Gaps = 17/156 (10%)
Query: 79 DSKLQLWDAE---TSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNN 135
D KL +WD TSK ++ H V S+N ++ IL +GS DK++ D+R
Sbjct: 251 DQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL 310
Query: 136 VTSCIKAHSGEVCGLKWS-NEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTD------- 187
++H E+ + WS + +LAS G D + +W+ SK+ +S D
Sbjct: 311 KLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLF 370
Query: 188 ----HCGGVKALAWSPHQVNVLATGGGREDGCIKIW 219
H + +W+P++ V+ + ED +IW
Sbjct: 371 IHGGHTAKISDFSWNPNEPWVICSVS--EDNIXQIW 404
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 48/118 (40%), Gaps = 15/118 (12%)
Query: 73 LAVGYMDSKLQLWDAETSKL-VRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVR 131
LA G D + LWD KL + E H + W+ N IL S D+ + D+
Sbjct: 291 LATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLS 350
Query: 132 VSNNVTSCIKA-------------HSGEVCGLKWS-NEGNLLASGGDDNVVRIWERSK 175
S A H+ ++ W+ NE ++ S +DN+ +IW+ ++
Sbjct: 351 KIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIXQIWQXAE 408
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 78/164 (47%), Gaps = 11/164 (6%)
Query: 67 SHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSII 126
+D + + G D +++WD ET + L+GH RV + ++G + SGS D SI
Sbjct: 246 QYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSL---QFDGIHVVSGSLDTSIR 302
Query: 127 NHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFT 186
DV N + + + H G++ + N+L SG D+ V+IW+ ++L
Sbjct: 303 VWDVETGNCIHT-LTGHQSLTSGMELKD--NILVSGNADSTVKIWDIKTGQCLQTLQGPN 359
Query: 187 DHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGI 230
H V L ++ N + T +DG +K+W+++ G I +
Sbjct: 360 KHQSAVTCLQFNK---NFVITSS--DDGTVKLWDLKTGEFIRNL 398
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 71/156 (45%), Gaps = 16/156 (10%)
Query: 76 GYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNN 135
G D L++W+AET + + L GH +T H + + SGS+D ++ D+
Sbjct: 175 GSTDRTLKVWNAETGECIHTLYGH---TSTVRCMHLHEKRVVSGSRDATLRVWDIETGQ- 230
Query: 136 VTSCIKAHSGEVCGLKWSN-EGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKA 194
C+ G V ++ +G + SG D +V++W+ + LH H V +
Sbjct: 231 ---CLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDP---ETETCLHTLQGHTNRVYS 284
Query: 195 LAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGI 230
L Q + + G D I++W+V+ G CIH +
Sbjct: 285 L-----QFDGIHVVSGSLDTSIRVWDVETGNCIHTL 315
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 98/230 (42%), Gaps = 52/230 (22%)
Query: 96 LEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVT-SCIKAHSGEVCGLKWSN 154
L+GH V T + G+ + SGS D ++ +V + VT C++ G G+ WS+
Sbjct: 114 LKGHDDHVITCL--QFCGNRIVSGSDDNTL-----KVWSAVTGKCLRTLVGHTGGV-WSS 165
Query: 155 E--GNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGRE 212
+ N++ SG D +++W + + +H H V+ + H+ V++ G
Sbjct: 166 QMRDNIIISGSTDRTLKVWN---AETGECIHTLYGHTSTVRCMHL--HEKRVVS---GSR 217
Query: 213 DGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASG---DGNKLCLWKYP 269
D +++W+++ G C+H +L GH + DG ++ Y
Sbjct: 218 DATLRVWDIETGQCLH-------------------VLMGHVAAVRCVQYDGRRVVSGAYD 258
Query: 270 NMTKVGE---------LQSSNSRILDLSQSPDGLTVATAGADETIRFWEA 310
M KV + LQ +R+ L DG+ V + D +IR W+
Sbjct: 259 FMVKVWDPETETCLHTLQGHTNRVYSLQ--FDGIHVVSGSLDTSIRVWDV 306
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 64/153 (41%), Gaps = 10/153 (6%)
Query: 65 SWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKS 124
S D + G +D+ +++WD ET + L GH + +S +IL SG+ D +
Sbjct: 284 SLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQ---SLTSGMELKDNILVSGNADST 340
Query: 125 IINHDVRVSNNVTSC--IKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSL 182
+ D++ + + H V L+++ N + + DD V++W+ ++L
Sbjct: 341 VKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK--NFVITSSDDGTVKLWDLKTGEFIRNL 398
Query: 183 HRFTDHCGGVKALAWSPHQVNV-LATGGGREDG 214
T GG + W N L G +G
Sbjct: 399 --VTLESGGSGGVVWRIRASNTKLVCAVGSRNG 429
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 63/290 (21%), Positives = 121/290 (41%), Gaps = 18/290 (6%)
Query: 24 WGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQ 83
WG ++ L V+ L W++ K+ +P + + +++ +A G +D+
Sbjct: 74 WGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICS 133
Query: 84 LWDAETS----KLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSC 139
+++ +T ++ R L GH ++ + N + +SG D + D+ T+
Sbjct: 134 IYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG--DTTCALWDIETGQQTTT- 190
Query: 140 IKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWE-RSKMSSSKSLHRFTDHCGGVKALAWS 198
H+G+V L + + L SG D ++W+ R M FT H + A+ +
Sbjct: 191 FTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR----QTFTGHESDINAICFF 246
Query: 199 PHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASG 258
P+ N ATG +D ++++++ + ICG+ K SG A
Sbjct: 247 PNG-NAFATGS--DDATCRLFDLRADQELMTYSHDNIICGITSVSFSK---SGRLLLAGY 300
Query: 259 DGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFW 308
D +W + G L ++R+ L + DG+ VAT D ++ W
Sbjct: 301 DDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 350
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/179 (17%), Positives = 62/179 (34%), Gaps = 8/179 (4%)
Query: 131 RVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCG 190
R+ ++ H ++ + W + LL S D + IW+ ++ +H
Sbjct: 53 RIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDS---YTTNKVHAIPLRSS 109
Query: 191 GVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILS 250
V A++P N +A GG D I+N++ T + ++ G L
Sbjct: 110 WVMTCAYAPSG-NYVACGG--LDNICSIYNLK--TREGNVRVSRELAGHTGYLSCCRFLD 164
Query: 251 GHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWE 309
+ S LW + ++ LS +PD + D + + W+
Sbjct: 165 DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 223
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 63/290 (21%), Positives = 121/290 (41%), Gaps = 18/290 (6%)
Query: 24 WGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQ 83
WG ++ L V+ L W++ K+ +P + + +++ +A G +D+
Sbjct: 63 WGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICS 122
Query: 84 LWDAETS----KLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSC 139
+++ +T ++ R L GH ++ + N + +SG D + D+ T+
Sbjct: 123 IYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG--DTTCALWDIETGQQTTT- 179
Query: 140 IKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWE-RSKMSSSKSLHRFTDHCGGVKALAWS 198
H+G+V L + + L SG D ++W+ R M FT H + A+ +
Sbjct: 180 FTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR----QTFTGHESDINAICFF 235
Query: 199 PHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASG 258
P+ N ATG +D ++++++ + ICG+ K SG A
Sbjct: 236 PNG-NAFATGS--DDATCRLFDLRADQELMTYSHDNIICGITSVSFSK---SGRLLLAGY 289
Query: 259 DGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFW 308
D +W + G L ++R+ L + DG+ VAT D ++ W
Sbjct: 290 DDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/179 (17%), Positives = 62/179 (34%), Gaps = 8/179 (4%)
Query: 131 RVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCG 190
R+ ++ H ++ + W + LL S D + IW+ ++ +H
Sbjct: 42 RIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDS---YTTNKVHAIPLRSS 98
Query: 191 GVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILS 250
V A++P N +A GG D I+N++ T + ++ G L
Sbjct: 99 WVMTCAYAPSG-NYVACGG--LDNICSIYNLK--TREGNVRVSRELAGHTGYLSCCRFLD 153
Query: 251 GHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWE 309
+ S LW + ++ LS +PD + D + + W+
Sbjct: 154 DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 212
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/289 (21%), Positives = 120/289 (41%), Gaps = 16/289 (5%)
Query: 24 WGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQ 83
WG ++ L V+ L W++ K+ +P + + +++ +A G +D+
Sbjct: 63 WGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICS 122
Query: 84 LWDAETS----KLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSC 139
+++ +T ++ R L GH ++ + N + +SG D + D+ T+
Sbjct: 123 IYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG--DTTCALWDIETGQQTTT- 179
Query: 140 IKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSP 199
H+G+V L + + L SG D ++W+ + FT H + A+ + P
Sbjct: 180 FTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD---VREGMCRQTFTGHESDINAICFFP 236
Query: 200 HQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGD 259
+ N ATG +D ++++++ + ICG+ K SG A D
Sbjct: 237 NG-NAFATGS--DDATCRLFDLRADQELMTYSHDNIICGITSVSFSK---SGRLLLAGYD 290
Query: 260 GNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFW 308
+W + G L ++R+ L + DG+ VAT D ++ W
Sbjct: 291 DFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/179 (17%), Positives = 62/179 (34%), Gaps = 8/179 (4%)
Query: 131 RVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCG 190
R+ ++ H ++ + W + LL S D + IW+ ++ +H
Sbjct: 42 RIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDS---YTTNKVHAIPLRSS 98
Query: 191 GVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILS 250
V A++P N +A GG D I+N++ T + ++ G L
Sbjct: 99 WVMTCAYAPSG-NYVACGG--LDNICSIYNLK--TREGNVRVSRELAGHTGYLSCCRFLD 153
Query: 251 GHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWE 309
+ S LW + ++ LS +PD + D + + W+
Sbjct: 154 DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 212
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 97/208 (46%), Gaps = 16/208 (7%)
Query: 22 IDWGRN------NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAV 75
+ WG N V+ +L ++ +WKW + ++ + G SV SH A
Sbjct: 38 VAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAAS 97
Query: 76 GYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNN 135
+D+ ++LWD E K +++++ T +++ + L +G+ + V S
Sbjct: 98 SSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSP-DSQYLATGTHVGKVNIFGVE-SGK 155
Query: 136 VTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKAL 195
+ + + +S +G LASG D ++ I++ +++ K LH H +++L
Sbjct: 156 KEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFD---IATGKLLHTLEGHAMPIRSL 212
Query: 196 AWSPH-QVNVLATGGGREDGCIKIWNVQ 222
+SP Q+ V A+ +DG IKI++VQ
Sbjct: 213 TFSPDSQLLVTAS----DDGYIKIYDVQ 236
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/289 (20%), Positives = 120/289 (41%), Gaps = 16/289 (5%)
Query: 24 WGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQ 83
WG ++ L ++ L W++ K+ +P + + +++ +A G +D+
Sbjct: 63 WGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICS 122
Query: 84 LWDAETS----KLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSC 139
+++ +T ++ R L GH ++ + N + +SG D + D+ T+
Sbjct: 123 IYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG--DTTCALWDIETGQQTTT- 179
Query: 140 IKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSP 199
H+G+V L + + L SG D ++W+ + FT H + A+ + P
Sbjct: 180 FTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD---VREGMCRQTFTGHESDINAICFFP 236
Query: 200 HQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGD 259
+ N ATG +D ++++++ + ICG+ K SG A D
Sbjct: 237 NG-NAFATGS--DDATCRLFDLRADQELMTYSHDNIICGITSVSFSK---SGRLLLAGYD 290
Query: 260 GNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFW 308
+W + G L ++R+ L + DG+ VAT D ++ W
Sbjct: 291 DFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/179 (17%), Positives = 62/179 (34%), Gaps = 8/179 (4%)
Query: 131 RVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCG 190
R+ ++ H ++ + W + LL S D + IW+ ++ +H
Sbjct: 42 RIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDS---YTTNKVHAIPLRSS 98
Query: 191 GVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILS 250
V A++P N +A GG D I+N++ T + ++ G L
Sbjct: 99 WVMTCAYAPSG-NYVACGG--LDNICSIYNLK--TREGNVRVSRELAGHTGYLSCCRFLD 153
Query: 251 GHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWE 309
+ S LW + ++ LS +PD + D + + W+
Sbjct: 154 DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 212
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 6/92 (6%)
Query: 234 AQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDG 293
A+I + W + +LS AS DG KL +W KV + +S ++ + +P G
Sbjct: 56 AKIYAMHWGTDSRLLLS-----ASQDG-KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 294 LTVATAGADETIRFWEAFGPSGDEDSVSHLAG 325
VA G D + G+ LAG
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAG 141
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/289 (20%), Positives = 120/289 (41%), Gaps = 16/289 (5%)
Query: 24 WGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQ 83
WG ++ L ++ L W++ K+ +P + + +++ +A G +D+
Sbjct: 63 WGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICS 122
Query: 84 LWDAETS----KLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSC 139
+++ +T ++ R L GH ++ + N + +SG D + D+ T+
Sbjct: 123 IYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG--DTTCALWDIETGQQTTT- 179
Query: 140 IKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSP 199
H+G+V L + + L SG D ++W+ + FT H + A+ + P
Sbjct: 180 FTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD---VREGMCRQTFTGHESDINAICFFP 236
Query: 200 HQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGD 259
+ N ATG +D ++++++ + ICG+ K SG A D
Sbjct: 237 NG-NAFATGS--DDATCRLFDLRADQELMTYSHDNIICGITSVSFSK---SGRLLLAGYD 290
Query: 260 GNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFW 308
+W + G L ++R+ L + DG+ VAT D ++ W
Sbjct: 291 DFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/179 (17%), Positives = 62/179 (34%), Gaps = 8/179 (4%)
Query: 131 RVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCG 190
R+ ++ H ++ + W + LL S D + IW+ ++ +H
Sbjct: 42 RIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDS---YTTNKVHAIPLRSS 98
Query: 191 GVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILS 250
V A++P N +A GG D I+N++ T + ++ G L
Sbjct: 99 WVMTCAYAPSG-NYVACGG--LDNICSIYNLK--TREGNVRVSRELAGHTGYLSCCRFLD 153
Query: 251 GHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWE 309
+ S LW + ++ LS +PD + D + + W+
Sbjct: 154 DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 212
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 6/92 (6%)
Query: 234 AQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDG 293
A+I + W + +LS AS DG KL +W KV + +S ++ + +P G
Sbjct: 56 AKIYAMHWGTDSRLLLS-----ASQDG-KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 294 LTVATAGADETIRFWEAFGPSGDEDSVSHLAG 325
VA G D + G+ LAG
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAG 141
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 69/296 (23%), Positives = 131/296 (44%), Gaps = 28/296 (9%)
Query: 29 VLAVALGPVLFLWKWENGKVKKLLQ---VPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLW 85
+L+ + + +WK + + + G + + V S D + G D L+LW
Sbjct: 54 ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLW 113
Query: 86 DAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSG 145
D T R GH + V + +++ N I+ SGS+DK+I + T ++HS
Sbjct: 114 DLTTGTTTRRFVGHTKDVLSVAFSSDNRQIV-SGSRDKTIKLWNTLGVCKYTVQDESHSE 172
Query: 146 EVCGLKWS-NEGN-LLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVN 203
V +++S N N ++ S G D +V++W +++ K H G + + SP +
Sbjct: 173 WVSCVRFSPNSSNPIIVSCGWDKLVKVWN---LANCKLKTNHIGHTGYLNTVTVSPDG-S 228
Query: 204 VLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKL 263
+ A+GG +DG +W++ +G ++ +D I L ++ + + + G S +
Sbjct: 229 LCASGG--KDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPS-------I 279
Query: 264 CLWKYPNMTKVGELQ----SSNSR-----ILDLSQSPDGLTVATAGADETIRFWEA 310
+W V EL+ S++S+ L+ S DG T+ D +R W+
Sbjct: 280 KIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQV 335
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/236 (22%), Positives = 94/236 (39%), Gaps = 30/236 (12%)
Query: 87 AETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSII----NHDVRVSNNVTSCIKA 142
E L L+GH+ V + ++ S S+DK+II D ++
Sbjct: 25 TEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRG 84
Query: 143 HSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQV 202
HS V + S++G SG D +R+W+ +++ + RF H V ++A+S
Sbjct: 85 HSHFVSDVVISSDGQFALSGSWDGTLRLWD---LTTGTTTRRFVGHTKDVLSVAFSSDNR 141
Query: 203 NVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNK 262
+++ G D IK+WN G C + + + H E +S FS +
Sbjct: 142 QIVS---GSRDKTIKLWNTL-GVCKYTVQ----------DESHSEWVSCVRFSPNSSNPI 187
Query: 263 LCLWKYPNMTKVGELQSSNSR---------ILDLSQSPDGLTVATAGADETIRFWE 309
+ + + KV L + + + ++ SPDG A+ G D W+
Sbjct: 188 IVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWD 243
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 67/154 (43%), Gaps = 11/154 (7%)
Query: 27 NNVLAVALG--PVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQL 84
+N + V+ G ++ +W N K+K G Y +V+ S D A G D + L
Sbjct: 184 SNPIIVSCGWDKLVKVWNLANCKLKT--NHIGHTGYLNTVTVSPDGSLCASGGKDGQAML 241
Query: 85 WDAETSKLVRNLEGHH--RRVATSSWNHW----NGHILTSGSKDKSIINHDVRVSNNVTS 138
WD K + L+G + S +W G + + II +++ +++
Sbjct: 242 WDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELK-QEVIST 300
Query: 139 CIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWE 172
KA + L WS +G L +G DN+VR+W+
Sbjct: 301 SSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQ 334
Score = 35.0 bits (79), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 66/159 (41%), Gaps = 13/159 (8%)
Query: 160 ASGGDDNVVRIWERSKMSSSKSLH-RFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKI 218
+SG D ++ +S M+ +L H G V +A +P +++ + D I +
Sbjct: 8 SSGVDLGTENLYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSAS--RDKTIIM 65
Query: 219 WNVQKGTCIHGIDAKAQICGLEWNRHHKE--ILSGHG-FSASG--DGNKLCLWKYPNMTK 273
W + + +GI +A L + H ++S G F+ SG DG L LW T
Sbjct: 66 WKLTRDETNYGIPQRA----LRGHSHFVSDVVISSDGQFALSGSWDGT-LRLWDLTTGTT 120
Query: 274 VGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFG 312
+L ++ S D + + D+TI+ W G
Sbjct: 121 TRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLG 159
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 67/296 (22%), Positives = 128/296 (43%), Gaps = 28/296 (9%)
Query: 29 VLAVALGPVLFLWKWENGKVKKLLQ---VPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLW 85
+L+ + + +WK + + + G + + V S D + G D L+LW
Sbjct: 31 ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLW 90
Query: 86 DAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSG 145
D T R GH + V + +++ N I+ SGS+DK+I + T ++HS
Sbjct: 91 DLTTGTTTRRFVGHTKDVLSVAFSSDNRQIV-SGSRDKTIKLWNTLGVCKYTVQDESHSE 149
Query: 146 EVCGLKWS-NEGN-LLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVN 203
V +++S N N ++ S G D +V++W +++ K H G + + SP +
Sbjct: 150 WVSCVRFSPNSSNPIIVSCGWDKLVKVWN---LANCKLKTNHIGHTGYLNTVTVSPDG-S 205
Query: 204 VLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKL 263
+ A+GG +DG +W++ +G ++ +D I L ++ + + + G S +
Sbjct: 206 LCASGG--KDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPS-------I 256
Query: 264 CLWKYPNMTKVGEL---------QSSNSRILDLSQSPDGLTVATAGADETIRFWEA 310
+W V EL ++ + L+ S DG T+ D +R W+
Sbjct: 257 KIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQV 312
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 67/154 (43%), Gaps = 11/154 (7%)
Query: 27 NNVLAVALG--PVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQL 84
+N + V+ G ++ +W N K+K G Y +V+ S D A G D + L
Sbjct: 161 SNPIIVSCGWDKLVKVWNLANCKLKT--NHIGHTGYLNTVTVSPDGSLCASGGKDGQAML 218
Query: 85 WDAETSKLVRNLEGHH--RRVATSSWNHW----NGHILTSGSKDKSIINHDVRVSNNVTS 138
WD K + L+G + S +W G + + II +++ +++
Sbjct: 219 WDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELK-QEVIST 277
Query: 139 CIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWE 172
KA + L WS +G L +G DN+VR+W+
Sbjct: 278 SSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQ 311
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 54/130 (41%), Gaps = 12/130 (9%)
Query: 188 HCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKE 247
H G V +A +P +++ + D I +W + + +GI +A L + H
Sbjct: 14 HNGWVTQIATTPQFPDMILSAS--RDKTIIMWKLTRDETNYGIPQRA----LRGHSHFVS 67
Query: 248 --ILSGHG-FSASG--DGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGAD 302
++S G F+ SG DG L LW T +L ++ S D + + D
Sbjct: 68 DVVISSDGQFALSGSWDGT-LRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRD 126
Query: 303 ETIRFWEAFG 312
+TI+ W G
Sbjct: 127 KTIKLWNTLG 136
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 68/154 (44%), Gaps = 26/154 (16%)
Query: 73 LAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVR- 131
+AVG K+QL D ++ L+GH + + SW+ +IL + S D + DVR
Sbjct: 159 VAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRR 218
Query: 132 --------------VSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSK-- 175
S V S AH+G+V GL ++++G L + G DN +R+W S
Sbjct: 219 ASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGE 278
Query: 176 ---------MSSSKSLHRFTDHCGGVKALAWSPH 200
++SK +FT CG + P+
Sbjct: 279 NTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPY 312
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 72/178 (40%), Gaps = 28/178 (15%)
Query: 155 EGNLLASGGDDNVVRIWE-----RSKMSSSKSL----------HRFTDHCGGVKALAWSP 199
EG + SGG D V+ +++ R + K++ HR++ V+ + W P
Sbjct: 55 EGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYS-----VETVQWYP 109
Query: 200 HQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGD 259
H + + D +K+W+ + + + ++ H + + H A G
Sbjct: 110 HDTGMFTSSSF--DKTLKVWDTNTLQTADVFNFEETV----YSHHMSPVSTKHCLVAVGT 163
Query: 260 -GNKLCLWKYPNMTKVGELQSSNSRILDLSQSPD-GLTVATAGADETIRFWEAFGPSG 315
G K+ L + + LQ IL +S SP +ATA AD ++ W+ SG
Sbjct: 164 RGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASG 221
Score = 34.7 bits (78), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 53/276 (19%), Positives = 116/276 (42%), Gaps = 56/276 (20%)
Query: 78 MDSKLQLWDAETSKLVRNLEGHHRR---------VATSSWNHWNGHILTSGSKDKSIINH 128
++ L+L AE+++ V LE + R + T G + SG D I+ +
Sbjct: 12 LEDPLRLRRAESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLY 71
Query: 129 DVRVSNNVT--SC----------IKAHSGEVCGLKW-SNEGNLLASGGDDNVVRIWERSK 175
D+ S+ + +C H V ++W ++ + S D +++W+ +
Sbjct: 72 DLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNT 131
Query: 176 MSSSKSLHR----FTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGID 231
+ ++ + ++ H V + H + + T G + +++ +++ G+C H +
Sbjct: 132 LQTADVFNFEETVYSHHMSPVS----TKHCLVAVGTRGPK----VQLCDLKSGSCSHILQ 183
Query: 232 A-KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYP------------NMTKVGELQ 278
+ +I + W+ + IL+ +AS D +++ LW N K ++
Sbjct: 184 GHRQEILAVSWSPRYDYILA----TASAD-SRVKLWDVRRASGCLITLDQHNGKKSQAVE 238
Query: 279 SSNS----RILDLSQSPDGLTVATAGADETIRFWEA 310
S+N+ ++ L + DGL + T G D +R W +
Sbjct: 239 SANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNS 274
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 98/222 (44%), Gaps = 20/222 (9%)
Query: 96 LEGHHRRVATSSWNHWNGHILTSGSKDKSIIN-----HDVRVSNNVTSCIKAHSGEVCGL 150
LEGH+ V + + + ++L S S+DK++I+ D + V S K HS V
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRS-FKGHSHIVQDC 71
Query: 151 KWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGG 210
+ +G S D +R+W+ +++ ++ RF H V ++ +++ G
Sbjct: 72 TLTADGAYALSASWDKTLRLWD---VATGETYQRFVGHKSDVXSVDIDKKASXIIS---G 125
Query: 211 REDGCIKIWNVQKGTCIHGI----DAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLW 266
D IK+W + KG C+ + D +Q+ + + + ++ ++G+ + W
Sbjct: 126 SRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVT---IISAGNDKXVKAW 181
Query: 267 KYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFW 308
+ NS I L+ SPDG +A+AG D I W
Sbjct: 182 NLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLW 223
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 94/243 (38%), Gaps = 26/243 (10%)
Query: 79 DSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTS 138
D L+LWD T + + GH V + + I+ SGS+DK+I +V
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXII-SGSRDKTI-----KVWTIKGQ 139
Query: 139 CIKAHSGE---------VCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHC 189
C+ G V K ++ + S G+D V+ W ++ F H
Sbjct: 140 CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEAD---FIGHN 196
Query: 190 GGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEW--NRHHKE 247
+ L SP + + G +DG I +WN+ + + A+ ++ L + NR+
Sbjct: 197 SNINTLTASPDGTLIASAG---KDGEIXLWNLAAKKAXYTLSAQDEVFSLAFSPNRYWLA 253
Query: 248 ILSGHGFSA-SGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIR 306
+ G S D L P G +++ + L+ S DG T+ D IR
Sbjct: 254 AATATGIKVFSLDPQYLVDDLRPEF--AGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIR 311
Query: 307 FWE 309
W+
Sbjct: 312 VWQ 314
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 46/116 (39%), Gaps = 8/116 (6%)
Query: 63 SVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHR--RVATSSWNHWNGHILTSGS 120
+++ S D +A D ++ LW+ K L +A S +W +G
Sbjct: 201 TLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDEVFSLAFSPNRYWLAAATATGI 260
Query: 121 K----DKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWE 172
K D + D+R KA L WS +G L +G DNV+R+W+
Sbjct: 261 KVFSLDPQYLVDDLR--PEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 60 YPTSVSWSHDAKTLAVGYMDSKLQLWDAETS 90
+ S++WS D +TL GY D+ +++W T+
Sbjct: 288 HAVSLAWSADGQTLFAGYTDNVIRVWQVXTA 318
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/283 (23%), Positives = 116/283 (40%), Gaps = 32/283 (11%)
Query: 43 WENGKVKKLLQ--VPGEDDYPTSVSWSHDAKTLA-VGYMDSKLQ---LWDAETSKLVRNL 96
W+ + +L+ +P +SW ++K +A VG + L+D TS NL
Sbjct: 86 WDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSN--GNL 143
Query: 97 EGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEG 156
G R + + + + SGS D ++ + S H+ V ++++ +G
Sbjct: 144 TGQARAMNSVDFKPSRPFRIISGSDDNTVAIFE-GPPFKFKSTFGEHTKFVHSVRYNPDG 202
Query: 157 NLLASGGDDNVVRIWE-----RSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGR 211
+L AS G D + ++ ++ + SL H G V L WSP + +
Sbjct: 203 SLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVA-HSGSVFGLTWSPDGTKIAS---AS 258
Query: 212 EDGCIKIWNVQ----KGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWK 267
D IKIWNV + T G + Q G+ W + +S +GF +
Sbjct: 259 ADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGF---------INFV 309
Query: 268 YPNMTKVGELQSS-NSRILDLSQSPDGLTVATAGADETIRFWE 309
P + + +++ N I LS S DG T+ +A A+ I W+
Sbjct: 310 NPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWD 352
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 83/177 (46%), Gaps = 13/177 (7%)
Query: 50 KLLQVPGEDDYPTS-VSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSW 108
KL +VP Y +S V+ S+D + +AVG DSK+ ++ + + H TS
Sbjct: 441 KLTEVP--ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVA 498
Query: 109 NHWNGHILTSGSKDKSIINHDVRVSNNV----TSCIKAHSGEVCGLKWSNEGNLLASGGD 164
NG L + + + +I + V+NN T+ H+ +V + WS + LA+G
Sbjct: 499 FSNNGAFLVATDQSRKVIPY--SVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSL 556
Query: 165 DNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNV 221
DN V +W +K S + + V ++ W ++ +++ G +D IK WNV
Sbjct: 557 DNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWL-NETTIVSAG---QDSNIKFWNV 609
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 87/218 (39%), Gaps = 49/218 (22%)
Query: 137 TSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSS--SKSLHRFTDHCGGVKA 194
T HS + K S G ASG VRIW+ ++ + ++ F+ G VK
Sbjct: 52 TEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFS---GPVKD 108
Query: 195 LAWSPHQVNVLATGGGRED-GCIKIWN--------VQKGTCIHGIDAKAQ-----ICGLE 240
++W + A G GRE G + +++ + ++ +D K I G +
Sbjct: 109 ISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSD 168
Query: 241 WN-----------------RHHKEILS------GHGFSASGDGNKLCLWKYPNMTKVGEL 277
N H K + S G F+++G + L+ + TK G
Sbjct: 169 DNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVF 228
Query: 278 QSSNSR-------ILDLSQSPDGLTVATAGADETIRFW 308
+ + + + L+ SPDG +A+A AD+TI+ W
Sbjct: 229 EDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIW 266
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 40/197 (20%), Positives = 71/197 (36%), Gaps = 52/197 (26%)
Query: 114 HILTSGSKDKSIINHDVRVSNNVTSCIKA--HSGEVCGLKWSNEGNLLASGGDDNVVRIW 171
+ G +D + H ++S S +K H E+ + +SN G L + V +
Sbjct: 461 QFVAVGGQDSKV--HVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPY 518
Query: 172 ERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGID 231
+ + +T H V ++WSP V LATG D + +WN+ K +
Sbjct: 519 SVANNFELAHTNSWTFHTAKVACVSWSPDNVR-LATG--SLDNSVIVWNMNKPS------ 569
Query: 232 AKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSP 291
+P + K SS + ++ L+++
Sbjct: 570 -----------------------------------DHPIIIKGAHAMSSVNSVIWLNET- 593
Query: 292 DGLTVATAGADETIRFW 308
T+ +AG D I+FW
Sbjct: 594 ---TIVSAGQDSNIKFW 607
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 58/120 (48%), Gaps = 11/120 (9%)
Query: 63 SVSWSHDAKTLAVGYMDSKLQLWDAETS-------KLVRNLEGHHRRVATSSWNHWNGHI 115
SV+W LA G DS + +W E S L+ +EGH V +W++ +G+
Sbjct: 63 SVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSN-DGYY 121
Query: 116 LTSGSKDKSIINHDVRVSNNVTSCI---KAHSGEVCGLKWSNEGNLLASGGDDNVVRIWE 172
L + S+DKS+ + S CI + HS +V + W LLAS D+ VRIW+
Sbjct: 122 LATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWK 181
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 76/167 (45%), Gaps = 17/167 (10%)
Query: 66 WSHDAK--TLAVGYMDSKLQL----WDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSG 119
WS D LA G D K++L +D T V + H + + + +W + +L +G
Sbjct: 18 WSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRP-HTSLLAAG 76
Query: 120 SKDKSII------NHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWER 173
S D ++ + D ++ + I+ H EV G+ WSN+G LA+ D V IWE
Sbjct: 77 SFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWET 136
Query: 174 SKMSSS-KSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIW 219
+ + + +H VK + W P + +LA+ D ++IW
Sbjct: 137 DESGEEYECISVLQEHSQDVKHVIWHPSEA-LLASSS--YDDTVRIW 180
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 60/133 (45%), Gaps = 16/133 (12%)
Query: 51 LLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETS----KLVRNLEGHHRRVATS 106
L + G ++ V+WS+D LA D + +W+ + S + + L+ H + V
Sbjct: 100 LAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHV 159
Query: 107 SWNHWNGHILTSGSKDKSI-INHDVRVSNNVTSCIKAHSGEVCGLKWSNEGN------LL 159
W H + +L S S D ++ I D + + H G V WS++ + L
Sbjct: 160 IW-HPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTV----WSSDFDKTEGVFRL 214
Query: 160 ASGGDDNVVRIWE 172
SG DD+ VR+W+
Sbjct: 215 CSGSDDSTVRVWK 227
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 58/140 (41%), Gaps = 25/140 (17%)
Query: 186 TDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTC-IHGIDAKAQICGLEWNRH 244
T H ++++AW PH ++LA G D + IW ++ +D A I G H
Sbjct: 55 TAHKKAIRSVAWRPH-TSLLAAGSF--DSTVSIWAKEESADRTFEMDLLAIIEG-----H 106
Query: 245 HKEILSGHGFSASGDGNKLC---------LWKYPNMTKVGE----LQSSNSRILDLSQSP 291
E+ G + S DG L +W+ + E LQ + + + P
Sbjct: 107 ENEV---KGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP 163
Query: 292 DGLTVATAGADETIRFWEAF 311
+A++ D+T+R W+ +
Sbjct: 164 SEALLASSSYDDTVRIWKDY 183
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
Query: 99 HHRRVATSSWNHWNGHILTSGSKDKSIINHDV----RVSNNVTSCIKAHSGEVCGLKWS- 153
H R+V +W +NG I + G+ + +V +V C + E+ +KW
Sbjct: 249 HKRQVYNVAWG-FNGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVY--EINVVKWLE 305
Query: 154 -NEGNLLASGGDDNVVRIWERSKMS 177
N +LA+GGDD +V W K +
Sbjct: 306 LNGKTILATGGDDGIVNFWSLEKAA 330
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 98/223 (43%), Gaps = 20/223 (8%)
Query: 95 NLEGHHRRVATSSWNHWNGHILTSGSKDKSIIN-----HDVRVSNNVTSCIKAHSGEVCG 149
LEGH+ V + + + ++L S S+DK++I+ D + V S K HS V
Sbjct: 6 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRS-FKGHSHIVQD 64
Query: 150 LKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGG 209
+ +G S D +R+W+ +++ ++ RF H V ++ +++
Sbjct: 65 CTLTADGAYALSASWDKTLRLWD---VATGETYQRFVGHKSDVMSVDIDKKASMIIS--- 118
Query: 210 GREDGCIKIWNVQKGTCIHGI----DAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCL 265
G D IK+W + KG C+ + D +Q+ + + + ++ ++G+ +
Sbjct: 119 GSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVT---IISAGNDKMVKA 174
Query: 266 WKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFW 308
W + NS I L+ SPDG +A+AG D I W
Sbjct: 175 WNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 217
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 55/245 (22%), Positives = 96/245 (39%), Gaps = 26/245 (10%)
Query: 79 DSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTS 138
D L+LWD T + + GH V + + ++ SGS+DK+I +V
Sbjct: 80 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTI-----KVWTIKGQ 133
Query: 139 CIKAHSGE---------VCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHC 189
C+ G V K ++ + S G+D +V+ W ++ F H
Sbjct: 134 CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD---FIGHN 190
Query: 190 GGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEW--NRHHKE 247
+ L SP + + G +DG I +WN+ ++ + A+ ++ L + NR+
Sbjct: 191 SNINTLTASPDGTLIASAG---KDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLA 247
Query: 248 ILSGHGFSA-SGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIR 306
+ G S D L P G +++ + L+ S DG T+ D IR
Sbjct: 248 AATATGIKVFSLDPQYLVDDLRPEF--AGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIR 305
Query: 307 FWEAF 311
W+
Sbjct: 306 VWQVM 310
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 47/116 (40%), Gaps = 8/116 (6%)
Query: 63 SVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHR--RVATSSWNHWNGHILTSGS 120
+++ S D +A D ++ LW+ K + L +A S +W +G
Sbjct: 195 TLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGI 254
Query: 121 K----DKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWE 172
K D + D+R KA L WS +G L +G DNV+R+W+
Sbjct: 255 KVFSLDPQYLVDDLR--PEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 308
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 60 YPTSVSWSHDAKTLAVGYMDSKLQLWDAETS 90
+ S++WS D +TL GY D+ +++W T+
Sbjct: 282 HAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 312
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 98/223 (43%), Gaps = 20/223 (8%)
Query: 95 NLEGHHRRVATSSWNHWNGHILTSGSKDKSIIN-----HDVRVSNNVTSCIKAHSGEVCG 149
LEGH+ V + + + ++L S S+DK++I+ D + V S K HS V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRS-FKGHSHIVQD 70
Query: 150 LKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGG 209
+ +G S D +R+W+ +++ ++ RF H V ++ +++
Sbjct: 71 CTLTADGAYALSASWDKTLRLWD---VATGETYQRFVGHKSDVMSVDIDKKASMIIS--- 124
Query: 210 GREDGCIKIWNVQKGTCIHGI----DAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCL 265
G D IK+W + KG C+ + D +Q+ + + + ++ ++G+ +
Sbjct: 125 GSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVT---IISAGNDKMVKA 180
Query: 266 WKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFW 308
W + NS I L+ SPDG +A+AG D I W
Sbjct: 181 WNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/243 (22%), Positives = 96/243 (39%), Gaps = 26/243 (10%)
Query: 79 DSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTS 138
D L+LWD T + + GH V + + ++ SGS+DK+I +V
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTI-----KVWTIKGQ 139
Query: 139 CIKAHSGE---------VCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHC 189
C+ G V K ++ + S G+D +V+ W ++ F H
Sbjct: 140 CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD---FIGHN 196
Query: 190 GGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEW--NRHHKE 247
+ L SP + + G +DG I +WN+ ++ + A+ ++ L + NR+
Sbjct: 197 SNINTLTASPDGTLIASAG---KDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLA 253
Query: 248 ILSGHGFSA-SGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIR 306
+ G S D L P G +++ + L+ S DG T+ D IR
Sbjct: 254 AATATGIKVFSLDPQYLVDDLRPEF--AGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIR 311
Query: 307 FWE 309
W+
Sbjct: 312 VWQ 314
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 47/116 (40%), Gaps = 8/116 (6%)
Query: 63 SVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHR--RVATSSWNHWNGHILTSGS 120
+++ S D +A D ++ LW+ K + L +A S +W +G
Sbjct: 201 TLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGI 260
Query: 121 K----DKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWE 172
K D + D+R KA L WS +G L +G DNV+R+W+
Sbjct: 261 KVFSLDPQYLVDDLR--PEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 98/223 (43%), Gaps = 20/223 (8%)
Query: 95 NLEGHHRRVATSSWNHWNGHILTSGSKDKSIIN-----HDVRVSNNVTSCIKAHSGEVCG 149
LEGH+ V + + + ++L S S+DK++I+ D + V S K HS V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRS-FKGHSHIVQD 70
Query: 150 LKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGG 209
+ +G S D +R+W+ +++ ++ RF H V ++ +++
Sbjct: 71 CTLTADGAYALSASWDKTLRLWD---VATGETYQRFVGHKSDVMSVDIDKKASMIIS--- 124
Query: 210 GREDGCIKIWNVQKGTCIHGI----DAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCL 265
G D IK+W + KG C+ + D +Q+ + + + ++ ++G+ +
Sbjct: 125 GSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVT---IISAGNDKMVKA 180
Query: 266 WKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFW 308
W + NS I L+ SPDG +A+AG D I W
Sbjct: 181 WNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 55/245 (22%), Positives = 96/245 (39%), Gaps = 26/245 (10%)
Query: 79 DSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTS 138
D L+LWD T + + GH V + + ++ SGS+DK+I +V
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTI-----KVWTIKGQ 139
Query: 139 CIKAHSGE---------VCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHC 189
C+ G V K ++ + S G+D +V+ W ++ F H
Sbjct: 140 CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD---FIGHN 196
Query: 190 GGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEW--NRHHKE 247
+ L SP + + G +DG I +WN+ ++ + A+ ++ L + NR+
Sbjct: 197 SNINTLTASPDGTLIASAG---KDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLA 253
Query: 248 ILSGHGFSA-SGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIR 306
+ G S D L P G +++ + L+ S DG T+ D IR
Sbjct: 254 AATATGIKVFSLDPQYLVDDLRPEF--AGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIR 311
Query: 307 FWEAF 311
W+
Sbjct: 312 VWQVM 316
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 47/116 (40%), Gaps = 8/116 (6%)
Query: 63 SVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHR--RVATSSWNHWNGHILTSGS 120
+++ S D +A D ++ LW+ K + L +A S +W +G
Sbjct: 201 TLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGI 260
Query: 121 K----DKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWE 172
K D + D+R KA L WS +G L +G DNV+R+W+
Sbjct: 261 KVFSLDPQYLVDDLR--PEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 60 YPTSVSWSHDAKTLAVGYMDSKLQLWDAETS 90
+ S++WS D +TL GY D+ +++W T+
Sbjct: 288 HAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 98/223 (43%), Gaps = 20/223 (8%)
Query: 95 NLEGHHRRVATSSWNHWNGHILTSGSKDKSIIN-----HDVRVSNNVTSCIKAHSGEVCG 149
LEGH+ V + + + ++L S S+DK++I+ D + V S K HS V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRS-FKGHSHIVQD 70
Query: 150 LKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGG 209
+ +G S D +R+W+ +++ ++ RF H V ++ +++
Sbjct: 71 CTLTADGAYALSASWDKTLRLWD---VATGETYQRFVGHKSDVMSVDIDKKASMIIS--- 124
Query: 210 GREDGCIKIWNVQKGTCIHGI----DAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCL 265
G D IK+W + KG C+ + D +Q+ + + + ++ ++G+ +
Sbjct: 125 GSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVT---IISAGNDKMVKA 180
Query: 266 WKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFW 308
W + NS I L+ SPDG +A+AG D I W
Sbjct: 181 WNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/245 (22%), Positives = 96/245 (39%), Gaps = 26/245 (10%)
Query: 79 DSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTS 138
D L+LWD T + + GH V + + ++ SGS+DK+I +V
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTI-----KVWTIKGQ 139
Query: 139 CIKAHSGE---------VCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHC 189
C+ G V K ++ + S G+D +V+ W ++ F H
Sbjct: 140 CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD---FIGHN 196
Query: 190 GGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEW--NRHHKE 247
+ L SP + + G +DG I +WN+ ++ + A+ ++ L + NR+
Sbjct: 197 SNINTLTASPDGTLIASAG---KDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLA 253
Query: 248 ILSGHGFSA-SGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIR 306
+ G S D L P G +++ + L+ S DG T+ D IR
Sbjct: 254 AATATGIKVFSLDPQYLVDDLRPEF--AGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIR 311
Query: 307 FWEAF 311
W+
Sbjct: 312 VWQVM 316
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 47/116 (40%), Gaps = 8/116 (6%)
Query: 63 SVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHR--RVATSSWNHWNGHILTSGS 120
+++ S D +A D ++ LW+ K + L +A S +W +G
Sbjct: 201 TLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGI 260
Query: 121 K----DKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWE 172
K D + D+R KA L WS +G L +G DNV+R+W+
Sbjct: 261 KVFSLDPQYLVDDLR--PEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 60 YPTSVSWSHDAKTLAVGYMDSKLQLWDAETS 90
+ S++WS D +TL GY D+ +++W T+
Sbjct: 288 HAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 98/223 (43%), Gaps = 20/223 (8%)
Query: 95 NLEGHHRRVATSSWNHWNGHILTSGSKDKSIIN-----HDVRVSNNVTSCIKAHSGEVCG 149
LEGH+ V + + + ++L S S+DK++I+ D + V S K HS V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRS-FKGHSHIVQD 70
Query: 150 LKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGG 209
+ +G S D +R+W+ +++ ++ RF H V ++ +++
Sbjct: 71 CTLTADGAYALSASWDKTLRLWD---VATGETYQRFVGHKSDVMSVDIDKKASMIIS--- 124
Query: 210 GREDGCIKIWNVQKGTCIHGI----DAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCL 265
G D IK+W + KG C+ + D +Q+ + + + ++ ++G+ +
Sbjct: 125 GSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVT---IISAGNDKMVKA 180
Query: 266 WKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFW 308
W + NS I L+ SPDG +A+AG D I W
Sbjct: 181 WNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/245 (22%), Positives = 95/245 (38%), Gaps = 26/245 (10%)
Query: 79 DSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTS 138
D L+LWD T + + GH V + + ++ SGS+DK+I +V
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTI-----KVWTIKGQ 139
Query: 139 CIKAHSGE---------VCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHC 189
C+ G V K ++ + S G+D +V+ W ++ F H
Sbjct: 140 CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD---FIGHN 196
Query: 190 GGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEW--NRHHKE 247
+ L SP + + G +DG I +WN+ ++ + A+ ++ L + NR+
Sbjct: 197 SNINTLTASPDGTLIASAG---KDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLA 253
Query: 248 ILSGHGFSA-SGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIR 306
+ G S D L P G ++ + L+ S DG T+ D IR
Sbjct: 254 AATATGIKVFSLDPQYLVDDLRPEF--AGYSAAAEPHAVSLAWSADGQTLFAGYTDNVIR 311
Query: 307 FWEAF 311
W+
Sbjct: 312 VWQVM 316
Score = 35.0 bits (79), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 47/116 (40%), Gaps = 8/116 (6%)
Query: 63 SVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHR--RVATSSWNHWNGHILTSGS 120
+++ S D +A D ++ LW+ K + L +A S +W +G
Sbjct: 201 TLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGI 260
Query: 121 K----DKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWE 172
K D + D+R S A L WS +G L +G DNV+R+W+
Sbjct: 261 KVFSLDPQYLVDDLRPEFAGYSA--AAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 60 YPTSVSWSHDAKTLAVGYMDSKLQLWDAETS 90
+ S++WS D +TL GY D+ +++W T+
Sbjct: 288 HAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 8/134 (5%)
Query: 45 NGKVKKLLQVPGEDDYPTSVSWSHDAKT-LAVGYMDSKLQLWDAETSKLVRNL-----EG 98
N V ++L G Y +S + D +T L G D LWD T + + G
Sbjct: 146 NMPVSRVLT--GHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSG 203
Query: 99 HHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNL 158
H V + S N N ++ SGS D ++ D+R+++ H G++ +K+ +G
Sbjct: 204 HTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQR 263
Query: 159 LASGGDDNVVRIWE 172
+G DD R+++
Sbjct: 264 FGTGSDDGTCRLFD 277
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/276 (22%), Positives = 121/276 (43%), Gaps = 43/276 (15%)
Query: 65 SWSHDAKTLAVGYMDSKLQLWDAETS-------KLVRNLEGHHRRVATSSWNHWNGHILT 117
+++ + +++A G +DS +++ + + R L GH ++ + L
Sbjct: 115 AFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLI 174
Query: 118 SGSKDKSIINHDV----RVSNNVTSCIKAHSGEVCGLKWSN-EGNLLASGGDDNVVRIWE 172
+GS D++ + DV R+S + H+ +V L ++ N+ SG D VR+W+
Sbjct: 175 TGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWD 234
Query: 173 RSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA 232
+S+++ + H G + ++ + P G G +DG ++++++ G
Sbjct: 235 LRI--TSRAVRTYHGHEGDINSVKFFPDGQRF---GTGSDDGTCRLFDMRTG-------H 282
Query: 233 KAQICGLEWNRHHKE--ILSGHGFSASGDGNKLCLWKYPN-------------MTKVGEL 277
+ Q+ E +R+ E I++ FS SG +L Y N + +G L
Sbjct: 283 QLQVYNREPDRNDNELPIVTSVAFSISG---RLLFAGYSNGDCYVWDTLLAEMVLNLGTL 339
Query: 278 QSSNS-RILDLSQSPDGLTVATAGADETIRFWEAFG 312
Q+S+ RI L S DG + T D+ ++ W G
Sbjct: 340 QNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSG 375
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 79/191 (41%), Gaps = 39/191 (20%)
Query: 140 IKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSP 199
++ HSG+V L W+ E N + S D + +W + ++S K+ H HC V A++P
Sbjct: 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVW--NALTSQKT-HAIKLHCPWVMECAFAP 118
Query: 200 HQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGH-GFSAS- 257
+ +V GG + C I+N+ G N +L+GH G+++S
Sbjct: 119 NGQSVAC--GGLDSAC-SIFNLSSQADRDG------------NMPVSRVLTGHKGYASSC 163
Query: 258 ------------GDGNKLC-LWKYPNMTKVGELQSS-----NSRILDLS-QSPDGLTVAT 298
G G++ C LW ++ S + +L LS S + +
Sbjct: 164 QYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFIS 223
Query: 299 AGADETIRFWE 309
D T+R W+
Sbjct: 224 GSCDTTVRLWD 234
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 90/232 (38%), Gaps = 30/232 (12%)
Query: 94 RNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWS 153
R L+GH +V + W I+ S S+D +I + S T IK H V ++
Sbjct: 60 RTLQGHSGKVYSLDWTPEKNWIV-SASQDGRLIVWNALTSQK-THAIKLHCPWVMECAFA 117
Query: 154 NEGNLLASGGDDNVVRIWERS-------KMSSSKSLHRFTDHCGGVKALAWSPHQVNVLA 206
G +A GG D+ I+ S M S+ L T H G + + P Q L
Sbjct: 118 PNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVL---TGHKGYASSCQYVPDQETRLI 174
Query: 207 TGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEW-NRHHKEILS-------GHGFSASG 258
TG G + C+ +W+V G + I G E+ + H ++LS + F +
Sbjct: 175 TGSG-DQTCV-LWDVTTG-------QRISIFGSEFPSGHTADVLSLSINSLNANMFISGS 225
Query: 259 DGNKLCLWKYPNMTK-VGELQSSNSRILDLSQSPDGLTVATAGADETIRFWE 309
+ LW ++ V I + PDG T D T R ++
Sbjct: 226 CDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFD 277
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 62 TSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNL----EGHHRRVATSSWNHWNGHILT 117
TSV++S + L GY + +WD +++V NL H R++ + +G L
Sbjct: 302 TSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSS-DGSALC 360
Query: 118 SGSKDKSI 125
+GS DK++
Sbjct: 361 TGSWDKNL 368
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 91/230 (39%), Gaps = 24/230 (10%)
Query: 96 LEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNE 155
L GH V T + + + +G+ DK I +D ++ + H G V LK+++
Sbjct: 117 LRGHMTSVITCL--QFEDNYVITGADDKMIRVYD-SINKKFLLQLSGHDGGVWALKYAH- 172
Query: 156 GNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGC 215
G +L SG D VR+W+ K + H F H V+ L ++ N+ G D
Sbjct: 173 GGILVSGSTDRTVRVWDIKKGCCT---HVFEGHNSTVRCLDIVEYK-NIKYIVTGSRDNT 228
Query: 216 IKIWNVQKGTCI--HGI--DAKAQICGLEWNRHHKEILSGHGFSA---SGDGN------- 261
+ +W + K + + HG D E N + +L GH S SG GN
Sbjct: 229 LHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSY 288
Query: 262 --KLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWE 309
L +W M + L RI + +A D TIR W+
Sbjct: 289 DNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWD 338
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/214 (19%), Positives = 86/214 (40%), Gaps = 32/214 (14%)
Query: 49 KKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSW 108
K LLQ+ G D ++ ++H L G D +++WD + EGH+ V
Sbjct: 153 KFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDI 211
Query: 109 NHW-NGHILTSGSKDKSI----------------------INHDVRVSNNVTSCIKAHSG 145
+ N + +GS+D ++ + H + ++ H
Sbjct: 212 VEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMA 271
Query: 146 EVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVL 205
V + S GN++ SG DN + +W+ ++M K L+ + H + + + + +
Sbjct: 272 SVRTV--SGHGNIVVSGSYDNTLIVWDVAQM---KCLYILSGHTDRIYSTIYDHERKRCI 326
Query: 206 ATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGL 239
+ D I+IW+++ G ++ + + GL
Sbjct: 327 SAS---MDTTIRIWDLENGELMYTLQGHTALVGL 357
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%)
Query: 40 LWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGH 99
L W+ ++K L + G D S + H+ K MD+ +++WD E +L+ L+GH
Sbjct: 292 LIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGH 351
Score = 31.2 bits (69), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 6/106 (5%)
Query: 18 YSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGY 77
YS + D R ++ ++ + +W ENG++ LQ G + S K L
Sbjct: 314 YSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQ--GHTALVGLLRLSD--KFLVSAA 369
Query: 78 MDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDK 123
D ++ WDA R HH ++ + + + +IL SGS+++
Sbjct: 370 ADGSIRGWDANDYS--RKFSYHHTNLSAITTFYVSDNILVSGSENQ 413
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 86/190 (45%), Gaps = 35/190 (18%)
Query: 102 RVATSSWNHWNGHILTSGSKDKSI-INHDVRVSNNVTSCIKAHSGEVCG----------L 150
R AT +W+H +L SG+ ++ N S + S + A S + L
Sbjct: 14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDL 73
Query: 151 KWSNEGNLLASGGDDNVVRIWERSKMSSS-KSLHRFTDHCGGVKALAWSPHQVNVLATGG 209
WS+ ++A D+ + ++ ++ +++ S+ RF++H VK + ++ Q NVLA+GG
Sbjct: 74 DWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGG 133
Query: 210 GREDGCIKIWNVQK-------------GTCIHGIDAKAQICGLEWNRHHKEILSGHGFSA 256
+G I IW++ K G + +D ++ L WN+ H F++
Sbjct: 134 N--NGEIFIWDMNKCTESPSNYTPLTPGQSMSSVD---EVISLAWNQSL-----AHVFAS 183
Query: 257 SGDGNKLCLW 266
+G N +W
Sbjct: 184 AGSSNFASIW 193
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 75/188 (39%), Gaps = 21/188 (11%)
Query: 54 VPGED----DYPTSVSWSHD-AKTLAVGYMDSKLQLWDAETSKLVRNLE------GHHRR 102
PG+ D S++W+ A A + +WD + K V +L G ++
Sbjct: 157 TPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQ 216
Query: 103 VATSSWNHWNGH---ILTSGSKDKSIINHDVRVSNNVTSCI-KAHSGEVCGLKWSNEG-N 157
++ W+ N T D SI+ D+R +N + + H + L W ++ +
Sbjct: 217 LSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEH 276
Query: 158 LLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIK 217
LL S G DN V +W S++ L +F ++P ++ A D I+
Sbjct: 277 LLLSSGRDNTVLLWNP---ESAEQLSQFPARGNWCFKTKFAPEAPDLFACASF--DNKIE 331
Query: 218 IWNVQKGT 225
+ +Q T
Sbjct: 332 VQTLQNLT 339
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/261 (19%), Positives = 96/261 (36%), Gaps = 52/261 (19%)
Query: 64 VSWSHDAKTLAVGYMDSKLQLWDAE-TSKLVRNL--EGHHRRVATSSWNHWNGHILTSGS 120
++W+ LA D ++++W E S + +++ EGH R V +W+ ++ ++
Sbjct: 22 LAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASF 81
Query: 121 KDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSK 180
+ I + + ++ H EV + W+ GNLLA+ D V +WE + +
Sbjct: 82 DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYE 141
Query: 181 SLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLE 240
+ H VK + W P Q
Sbjct: 142 CVSVLNSHTQDVKHVVWHPSQ--------------------------------------- 162
Query: 241 WNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAG 300
E+L+ + D KL + + L+ S + L+ P G +A+
Sbjct: 163 ------ELLASASYD---DTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCS 213
Query: 301 ADETIRFWEAFGPSGDEDSVS 321
D T+R W + P G+E V+
Sbjct: 214 DDRTVRIWRQYLP-GNEQGVA 233
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 63/151 (41%), Gaps = 5/151 (3%)
Query: 27 NNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWD 86
N + + + +WK + + + G ++ SV+W+ LA D + +W+
Sbjct: 74 NYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWE 133
Query: 87 AETS---KLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNV-TSCIKA 142
+ + V L H + V W H + +L S S D ++ + + V + ++
Sbjct: 134 VDEEDEYECVSVLNSHTQDVKHVVW-HPSQELLASASYDDTVKLYREEEDDWVCCATLEG 192
Query: 143 HSGEVCGLKWSNEGNLLASGGDDNVVRIWER 173
H V L + G LAS DD VRIW +
Sbjct: 193 HESTVWSLAFDPSGQRLASCSDDRTVRIWRQ 223
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 74/183 (40%), Gaps = 26/183 (14%)
Query: 64 VSWSHDAKTLAVGYMDSKLQLWDAETSKLV--RNLEGHHRRVATSSWNHWNGHILTSGSK 121
V W + LA D ++L+ E V LEGH V + +++ +G L S S
Sbjct: 156 VVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDP-SGQRLASCSD 214
Query: 122 DKSII---------NHDVRVSNNVTS--CIKA----HSGEVCGLKWSNEGNLLASGGDDN 166
D+++ V S + S CI HS + + W LA+ D+
Sbjct: 215 DRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDD 274
Query: 167 VVRIWERSKMSSSK------SLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWN 220
+R+++ S + + H H V +AW+P + +LA+ +DG + W
Sbjct: 275 AIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCS--DDGEVAFWK 332
Query: 221 VQK 223
Q+
Sbjct: 333 YQR 335
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 94/233 (40%), Gaps = 27/233 (11%)
Query: 96 LEGHHRRVAT-----SSWNHWNGHILTSGSKDKSIINHDVRVSNN------VTSCIKAHS 144
LEGH V + S + + +L SGS+DK+++ + + H+
Sbjct: 17 LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHN 76
Query: 145 GEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNV 204
V L S E S D +R+W+ + + + RF H V ++A+SP +
Sbjct: 77 HFVSDLALSQENCFAISSSWDKTLRLWD---LRTGTTYKRFVGHQSEVYSVAFSPDNRQI 133
Query: 205 LATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHG--------FSA 256
L+ G RE IK+WN+ G C K + I+ F++
Sbjct: 134 LSAGAERE---IKLWNIL-GECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFAS 189
Query: 257 SGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWE 309
G +L +W N ++ S + LS SP+G +AT G D+ + W+
Sbjct: 190 VGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWD 241
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 65/153 (42%), Gaps = 17/153 (11%)
Query: 79 DSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDK----------SIINH 128
D L+LWD T + GH V + +++ N IL++G++ + +
Sbjct: 97 DKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSA 156
Query: 129 DVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDH 188
+ ++ SC++ K AS G D +++W ++ + + F H
Sbjct: 157 EKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN----TNFQIRYTFKAH 212
Query: 189 CGGVKALAWSPHQVNVLATGGGREDGCIKIWNV 221
V L+ SP+ +ATGG +D + IW++
Sbjct: 213 ESNVNHLSISPNG-KYIATGG--KDKKLLIWDI 242
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 263 LCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFG 312
L LW T S + ++ SPD + +AGA+ I+ W G
Sbjct: 100 LRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG 149
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 80/171 (46%), Gaps = 15/171 (8%)
Query: 68 HDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIIN 127
+D + + G DS +++WD T +++ L H V +N NG ++T SKD+SI
Sbjct: 181 YDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTC-SKDRSIAV 237
Query: 128 HDVRVSNNVT--SCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRF 185
D+ ++T + H V + + ++ + ASG D +++W S ++L+
Sbjct: 238 WDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASG--DRTIKVWNTSTCEFVRTLN-- 293
Query: 186 TDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQI 236
H G+ L + V G D I++W+++ G C+ ++ ++
Sbjct: 294 -GHKRGIACLQYRDRLV-----VSGSSDNTIRLWDIECGACLRVLEGHEEL 338
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 60/140 (42%), Gaps = 12/140 (8%)
Query: 69 DAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINH 128
D K + D +++W+ T + VR L GH R +A + ++ SGS D +I
Sbjct: 265 DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACL---QYRDRLVVSGSSDNTIRLW 321
Query: 129 DVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKS------L 182
D+ + ++ H V +++ N+ + SG D +++W+ ++ L
Sbjct: 322 DIECGACL-RVLEGHEELVRCIRFDNKR--IVSGAYDGKIKVWDLVAALDPRAPAGTLCL 378
Query: 183 HRFTDHCGGVKALAWSPHQV 202
+H G V L + Q+
Sbjct: 379 RTLVEHSGRVFRLQFDEFQI 398
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 68/159 (42%), Gaps = 13/159 (8%)
Query: 68 HDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIIN 127
+D + + G D+ +++WD T + R L GH V ++ ++ +GS D ++
Sbjct: 141 YDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE---RVIITGSSDSTVRV 197
Query: 128 HDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTD 187
DV + + I H V L+++N ++ + D + +W+ + +
Sbjct: 198 WDVNTGEMLNTLIH-HCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVG 254
Query: 188 HCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTC 226
H V + + + V A+G D IK+WN TC
Sbjct: 255 HRAAVNVVDFDDKYI-VSASG----DRTIKVWNT--STC 286
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 84/205 (40%), Gaps = 16/205 (7%)
Query: 112 NGHILTSGSKDKSII----NHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNV 167
N I+ S S+DKSII D + + HS V + S++G SG D
Sbjct: 394 NADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGE 453
Query: 168 VRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCI 227
+R+W+ +++ S RF H V ++A+S +++ D IK+WN G C
Sbjct: 454 LRLWD---LAAGVSTRRFVGHTKDVLSVAFSLDNRQIVS---ASRDRTIKLWNTL-GECK 506
Query: 228 HGIDAKAQICGLEWN---RHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRI 284
+ I + +W R L SAS D + +W N L +
Sbjct: 507 YTISEGGE-GHRDWVSCVRFSPNTLQPTIVSASWD-KTVKVWNLSNCKLRSTLAGHTGYV 564
Query: 285 LDLSQSPDGLTVATAGADETIRFWE 309
++ SPDG A+ G D + W+
Sbjct: 565 STVAVSPDGSLCASGGKDGVVLLWD 589
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 89/196 (45%), Gaps = 21/196 (10%)
Query: 53 QVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWN 112
++ G + V S D + G D +L+LWD R GH + V + +++ N
Sbjct: 425 RLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDN 484
Query: 113 GHILTSGSKDKSIINHDVRVSNNVTSCI-------KAHSGEVCGLKWSNEG--NLLASGG 163
I+ S S+D++I ++ N + C + H V +++S + S
Sbjct: 485 RQIV-SASRDRTI-----KLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSAS 538
Query: 164 DDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQK 223
D V++W +S+ K H G V +A SP ++ A+GG +DG + +W++ +
Sbjct: 539 WDKTVKVW---NLSNCKLRSTLAGHTGYVSTVAVSPDG-SLCASGG--KDGVVLLWDLAE 592
Query: 224 GTCIHGIDAKAQICGL 239
G ++ ++A + I L
Sbjct: 593 GKKLYSLEANSVIHAL 608
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 61/148 (41%), Gaps = 19/148 (12%)
Query: 40 LWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGH 99
+W N K++ L G Y ++V+ S D A G D + LWD K + +LE +
Sbjct: 545 VWNLSNCKLRSTLA--GHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN 602
Query: 100 H--RRVATSSWNHWNGHILTSGSK-----DKSIINHDVRVSNNVTSCIKAHSGEVC---- 148
+ S +W G K KSI+ D++V + +SG
Sbjct: 603 SVIHALCFSPNRYWLCAATEHGIKIWDLESKSIV-EDLKVDLKAEAEKADNSGPAATKRK 661
Query: 149 -----GLKWSNEGNLLASGGDDNVVRIW 171
L WS +G+ L SG D V+R+W
Sbjct: 662 VIYCTSLNWSADGSTLFSGYTDGVIRVW 689
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 55/130 (42%), Gaps = 12/130 (9%)
Query: 188 HCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKE 247
H V A+A +++ + D I +W + K +G+ A+ ++ G + H E
Sbjct: 381 HTDMVTAIATPIDNADIIVSAS--RDKSIILWKLTKDDKAYGV-AQRRLTG---HSHFVE 434
Query: 248 --ILSGHG-FSASG--DGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGAD 302
+LS G F+ SG DG +L LW +L ++ S D + +A D
Sbjct: 435 DVVLSSDGQFALSGSWDG-ELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRD 493
Query: 303 ETIRFWEAFG 312
TI+ W G
Sbjct: 494 RTIKLWNTLG 503
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 90/230 (39%), Gaps = 24/230 (10%)
Query: 96 LEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNE 155
L GH V T + + + +G+ DK I +D ++ + H G V LK+++
Sbjct: 117 LRGHXTSVITCL--QFEDNYVITGADDKXIRVYD-SINKKFLLQLSGHDGGVWALKYAH- 172
Query: 156 GNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGC 215
G +L SG D VR+W+ K + H F H V+ L ++ N+ G D
Sbjct: 173 GGILVSGSTDRTVRVWDIKKGCCT---HVFEGHNSTVRCLDIVEYK-NIKYIVTGSRDNT 228
Query: 216 IKIWNVQKGTCI--HGI--DAKAQICGLEWNRHHKEILSGHGFSA---SGDGN------- 261
+ +W + K + + HG D E N + +L GH S SG GN
Sbjct: 229 LHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSY 288
Query: 262 --KLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWE 309
L +W + L RI + +A D TIR W+
Sbjct: 289 DNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWD 338
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 78/188 (41%), Gaps = 21/188 (11%)
Query: 51 LLQVPGEDDYPTSVSWSHDAKTLAV---------GYMDSKLQLWDAETSKLVRNLEGHHR 101
+ P E+ Y V H A V G D+ L +WD K + L GH
Sbjct: 252 VFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTD 311
Query: 102 RVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLAS 161
R+ ++ ++H + S S D +I D+ + + ++ H+ V L+ S++ L S
Sbjct: 312 RIYSTIYDHERKRCI-SASXDTTIRIWDLE-NGELXYTLQGHTALVGLLRLSDK--FLVS 367
Query: 162 GGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNV 221
D +R W+ + S +F+ H + A+ N+L +G + I+N+
Sbjct: 368 AAADGSIRGWDANDYS-----RKFSYHHTNLSAITTFYVSDNILVSGSENQ---FNIYNL 419
Query: 222 QKGTCIHG 229
+ G +H
Sbjct: 420 RSGKLVHA 427
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/214 (19%), Positives = 84/214 (39%), Gaps = 32/214 (14%)
Query: 49 KKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSW 108
K LLQ+ G D ++ ++H L G D +++WD + EGH+ V
Sbjct: 153 KFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDI 211
Query: 109 NHW-NGHILTSGSKDKS----------------------IINHDVRVSNNVTSCIKAHSG 145
+ N + +GS+D + ++ H + ++ H
Sbjct: 212 VEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXA 271
Query: 146 EVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVL 205
V + S GN++ SG DN + +W+ ++ K L+ + H + + + + +
Sbjct: 272 SVRTV--SGHGNIVVSGSYDNTLIVWD---VAQXKCLYILSGHTDRIYSTIYDHERKRCI 326
Query: 206 ATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGL 239
+ D I+IW+++ G + + + GL
Sbjct: 327 SAS---XDTTIRIWDLENGELXYTLQGHTALVGL 357
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 28/60 (46%)
Query: 40 LWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGH 99
L W+ + K L + G D S + H+ K D+ +++WD E +L L+GH
Sbjct: 292 LIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGH 351
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 6/106 (5%)
Query: 18 YSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGY 77
YS + D R ++ + + +W ENG++ LQ G + S K L
Sbjct: 314 YSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQ--GHTALVGLLRLSD--KFLVSAA 369
Query: 78 MDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDK 123
D ++ WDA + R HH ++ + + + +IL SGS+++
Sbjct: 370 ADGSIRGWDA--NDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQ 413
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 59/278 (21%), Positives = 104/278 (37%), Gaps = 63/278 (22%)
Query: 36 PVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRN 95
P+ F K EN KK V +Y ++ S+++ + D LWD E+ +L+++
Sbjct: 134 PLTFD-KNENMAAKKK-SVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQS 191
Query: 96 LEGHHRRVATSSWN-HWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSN 154
GH V G+ SG DK + D+R S + H +V +++
Sbjct: 192 FHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMR-SGQCVQAFETHESDVNSVRYYP 250
Query: 155 EGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATG----GG 210
G+ ASG DD R+++ + + + + ++ +++ + V+ +G G
Sbjct: 251 SGDAFASGSDDATCRLYD---LRADREVAIYSK-----ESIIFGASSVDFSLSGRLLFAG 302
Query: 211 REDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPN 270
D I +W+V KG+ + IL GH
Sbjct: 303 YNDYTINVWDVLKGSRV-------------------SILFGH------------------ 325
Query: 271 MTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFW 308
+R+ L SPDG + D T+R W
Sbjct: 326 ----------ENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/228 (21%), Positives = 90/228 (39%), Gaps = 23/228 (10%)
Query: 91 KLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGL 150
K R L+GH +V W I++S S+D +I D + N + V
Sbjct: 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSS-SQDGKVIVWD-SFTTNKEHAVTMPCTWVMAC 112
Query: 151 KWSNEGNLLASGGDDNVVRIW------ERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNV 204
++ G +A GG DN ++ + + KS+ T++ + A +++ + +
Sbjct: 113 AYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNY---LSACSFTNSDMQI 169
Query: 205 LATGGGREDGCIKIWNVQKGTCI---HGIDAKAQICGLEWNRHHKEILSGHGFSASGDGN 261
L G DG +W+V+ G + HG A L + +G+ F + G
Sbjct: 170 LTASG---DGTCALWDVESGQLLQSFHGHGADVLCLDLAPSE------TGNTFVSGGCDK 220
Query: 262 KLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWE 309
K +W + V ++ S + + P G A+ D T R ++
Sbjct: 221 KAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYD 268
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 82/199 (41%), Gaps = 13/199 (6%)
Query: 35 GPVLFLWKWENGKV-KKLLQVPGEDDYPTSVSW-SHDAKTLAVGYMDSKLQLWDAETSKL 92
G L L + G+V K + V G ++W H+ +A G D + +W+ L
Sbjct: 57 GAFLVLPLGKTGRVDKNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGL 116
Query: 93 VR-------NLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNV-TSCIKAHS 144
V LEGH +RV +W+ ++L S D I+ DV V T H
Sbjct: 117 VLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHP 176
Query: 145 GEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNV 204
+ + WS +G L+ + D VR+ E K + R + V A+ S + +
Sbjct: 177 DTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVS--EGKI 234
Query: 205 LATGGGR-EDGCIKIWNVQ 222
L TG R + + +W+ +
Sbjct: 235 LTTGFSRMSERQVALWDTK 253
Score = 35.0 bits (79), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 54/130 (41%), Gaps = 11/130 (8%)
Query: 188 HCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKE 247
H V +AW PH NV+A+G ED + +W + G + + + + LE +
Sbjct: 80 HTAPVLDIAWXPHNDNVIASGS--EDCTVMVWEIPDGGLV--LPLREPVITLEGHTKRVG 135
Query: 248 ILSGHGFS-----ASGDGNKLCLWKYPNMTKVGELQSS--NSRILDLSQSPDGLTVATAG 300
I++ H + ++G N + +W V L I + S DG + T+
Sbjct: 136 IVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC 195
Query: 301 ADETIRFWEA 310
D+ +R E
Sbjct: 196 RDKRVRVIEP 205
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 63/151 (41%), Gaps = 10/151 (6%)
Query: 35 GPVLFLWKWENGKV-KKLLQVPGEDDYPTSVSW-SHDAKTLAVGYMDSKLQLWDAETSKL 92
G L L + G+V K + V G ++W H+ +A G D + +W+ L
Sbjct: 57 GAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGL 116
Query: 93 VR-------NLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSC-IKAHS 144
V LEGH +RV +W+ ++L S D I+ DV V + H
Sbjct: 117 VLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHP 176
Query: 145 GEVCGLKWSNEGNLLASGGDDNVVRIWERSK 175
+ + WS +G L+ + D VR+ E K
Sbjct: 177 DTIYSVDWSRDGALICTSCRDKRVRVIEPRK 207
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 57/138 (41%), Gaps = 11/138 (7%)
Query: 180 KSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGL 239
K++ H V +AW PH NV+A+G ED + +W + G + + + + L
Sbjct: 72 KNVPLVCGHTAPVLDIAWCPHNDNVIASGS--EDCTVMVWEIPDGGLV--LPLREPVITL 127
Query: 240 EWNRHHKEILSGHGFS-----ASGDGNKLCLWKYPNMTKVGELQSS--NSRILDLSQSPD 292
E + I++ H + ++G N + +W V L I + S D
Sbjct: 128 EGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRD 187
Query: 293 GLTVATAGADETIRFWEA 310
G + T+ D+ +R E
Sbjct: 188 GALICTSCRDKRVRVIEP 205
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 73/178 (41%), Gaps = 15/178 (8%)
Query: 49 KKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETS-KLVRNLEGHHRRVATSS 107
+K++ DY S++ + G D ++LW+ E + L + EGH V +
Sbjct: 88 EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVA 147
Query: 108 WNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNL-----LASG 162
+N + SG D+++ V T +G+ G+ + + L + +
Sbjct: 148 FNPKDPSTFASGCLDRTV---KVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITA 204
Query: 163 GDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWN 220
DD ++IW+ S +L H V + P +++ G EDG +KIWN
Sbjct: 205 SDDLTIKIWDYQTKSCVATLE---GHMSNVSFAVFHPTLPIIIS---GSEDGTLKIWN 256
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 32/160 (20%), Positives = 72/160 (45%), Gaps = 5/160 (3%)
Query: 73 LAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRV 132
+ VG D ++++++ T + V + E H + + + + ++L SGS D ++ +
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVL-SGSDDLTVKLWNWEN 128
Query: 133 SNNVTSCIKAHSGEVCGLKWS-NEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGG 191
+ + + H V + ++ + + ASG D V++W + + + +L T G
Sbjct: 129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT--TGQERG 186
Query: 192 VKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGID 231
V + + P +D IKIW+ Q +C+ ++
Sbjct: 187 VNYVDYYPLPDKPYMITAS-DDLTIKIWDYQTKSCVATLE 225
Score = 31.2 bits (69), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 47/117 (40%), Gaps = 23/117 (19%)
Query: 58 DDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILT 117
D YP D + D +++WD +T V LEGH V+ + + H I+
Sbjct: 191 DYYPLP-----DKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF-HPTLPIII 244
Query: 118 SGSKDKSI---------INHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDD 165
SGS+D ++ + + V + CI H + N +ASG D+
Sbjct: 245 SGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHP--------TGRKNYIASGFDN 293
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 73/178 (41%), Gaps = 15/178 (8%)
Query: 49 KKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETS-KLVRNLEGHHRRVATSS 107
+K++ DY S++ + G D ++LW+ E + L + EGH V +
Sbjct: 88 EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVA 147
Query: 108 WNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNL-----LASG 162
+N + SG D+++ V T +G+ G+ + + L + +
Sbjct: 148 FNPKDPSTFASGCLDRTV---KVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITA 204
Query: 163 GDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWN 220
DD ++IW+ S +L H V + P +++ G EDG +KIWN
Sbjct: 205 SDDLTIKIWDYQTKSCVATLE---GHMSNVSFAVFHPTLPIIIS---GSEDGTLKIWN 256
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 32/160 (20%), Positives = 72/160 (45%), Gaps = 5/160 (3%)
Query: 73 LAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRV 132
+ VG D ++++++ T + V + E H + + + + ++L SGS D ++ +
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVL-SGSDDLTVKLWNWEN 128
Query: 133 SNNVTSCIKAHSGEVCGLKWS-NEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGG 191
+ + + H V + ++ + + ASG D V++W + + + +L T G
Sbjct: 129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT--TGQERG 186
Query: 192 VKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGID 231
V + + P +D IKIW+ Q +C+ ++
Sbjct: 187 VNYVDYYPLPDKPYMITAS-DDLTIKIWDYQTKSCVATLE 225
Score = 31.2 bits (69), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 47/117 (40%), Gaps = 23/117 (19%)
Query: 58 DDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILT 117
D YP D + D +++WD +T V LEGH V+ + + H I+
Sbjct: 191 DYYPLP-----DKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF-HPTLPIII 244
Query: 118 SGSKDKSI---------INHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDD 165
SGS+D ++ + + V + CI H + N +ASG D+
Sbjct: 245 SGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHP--------TGRKNYIASGFDN 293
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 73/178 (41%), Gaps = 15/178 (8%)
Query: 49 KKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETS-KLVRNLEGHHRRVATSS 107
+K++ DY S++ + G D ++LW+ E + L + EGH V +
Sbjct: 88 EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVA 147
Query: 108 WNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNL-----LASG 162
+N + SG D+++ V T +G+ G+ + + L + +
Sbjct: 148 FNPKDPSTFASGCLDRTV---KVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITA 204
Query: 163 GDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWN 220
DD ++IW+ S +L H V + P +++ G EDG +KIWN
Sbjct: 205 SDDLTIKIWDYQTKSCVATLE---GHMSNVSFAVFHPTLPIIIS---GSEDGTLKIWN 256
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 32/160 (20%), Positives = 72/160 (45%), Gaps = 5/160 (3%)
Query: 73 LAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRV 132
+ VG D ++++++ T + V + E H + + + + ++L SGS D ++ +
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVL-SGSDDLTVKLWNWEN 128
Query: 133 SNNVTSCIKAHSGEVCGLKWS-NEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGG 191
+ + + H V + ++ + + ASG D V++W + + + +L T G
Sbjct: 129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT--TGQERG 186
Query: 192 VKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGID 231
V + + P +D IKIW+ Q +C+ ++
Sbjct: 187 VNYVDYYPLPDKPYMITAS-DDLTIKIWDYQTKSCVATLE 225
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 18/96 (18%)
Query: 79 DSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSI---------INHD 129
D +++WD +T V LEGH V+ + + H I+ SGS+D ++ +
Sbjct: 207 DLTIKIWDYQTKSCVATLEGHMSNVSFAVF-HPTLPIIISGSEDGTLKIWNSSTYKVEKT 265
Query: 130 VRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDD 165
+ V + CI H + N +ASG D+
Sbjct: 266 LNVGLERSWCIATHP--------TGRKNYIASGFDN 293
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 73/178 (41%), Gaps = 15/178 (8%)
Query: 49 KKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETS-KLVRNLEGHHRRVATSS 107
+K++ DY S++ + G D ++LW+ E + L + EGH V +
Sbjct: 88 EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVA 147
Query: 108 WNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNL-----LASG 162
+N + SG D+++ V T +G+ G+ + + L + +
Sbjct: 148 FNPKDPSTFASGCLDRTV---KVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITA 204
Query: 163 GDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWN 220
DD ++IW+ S +L H V + P +++ G EDG +KIWN
Sbjct: 205 SDDLTIKIWDYQTKSCVATLE---GHMSNVSFAVFHPTLPIIIS---GSEDGTLKIWN 256
Score = 31.2 bits (69), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 32/160 (20%), Positives = 72/160 (45%), Gaps = 5/160 (3%)
Query: 73 LAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRV 132
+ VG D ++++++ T + V + E H + + + + ++L SGS D ++ +
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVL-SGSDDLTVKLWNWEN 128
Query: 133 SNNVTSCIKAHSGEVCGLKWS-NEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGG 191
+ + + H V + ++ + + ASG D V++W + + + +L T G
Sbjct: 129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT--TGQERG 186
Query: 192 VKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGID 231
V + + P +D IKIW+ Q +C+ ++
Sbjct: 187 VNYVDYYPLPDKPYMITAS-DDLTIKIWDYQTKSCVATLE 225
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/269 (20%), Positives = 110/269 (40%), Gaps = 43/269 (15%)
Query: 62 TSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSK 121
T ++WSHD ++ G + +L+LW+ +T L+ L H + + WN HI++ +
Sbjct: 112 TCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVE 170
Query: 122 DKSII----------NHDVRVSNNVTSCIKAHSGE---VCGLKWSNEGNLLASG--GDDN 166
+ +I+ + +++ + + + HSG+ ++W ++ + G G
Sbjct: 171 NVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIF 230
Query: 167 VVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTC 226
V +I E++ + H G + L ++ +L+ +DG ++IW
Sbjct: 231 VYQITEKTPTG------KLIGHHGPISVLEFNDTNKLLLS---ASDDGTLRIW------- 274
Query: 227 IHGIDAKAQICGLEWNRHHKEILSG------HGFSASGDGNKLCLWKYPNMTKVGELQSS 280
HG + +Q C + H + I+S S S DG+ + LW T +
Sbjct: 275 -HGGNGNSQNC---FYGHSQSIVSASWVGDDKVISCSMDGS-VRLWSLKQNTLLALSIVD 329
Query: 281 NSRILDLSQSPDGLTVATAGADETIRFWE 309
I S DG A A D + ++
Sbjct: 330 GVPIFAGRISQDGQKYAVAFMDGQVNVYD 358
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 43/235 (18%), Positives = 91/235 (38%), Gaps = 37/235 (15%)
Query: 103 VATSSWNHWNGHILTSGSKD-------------------KSIINHDVRVSNNVTSCIKAH 143
+ +S+WN + IL G K+ K I ++R +++
Sbjct: 48 IVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKT 107
Query: 144 SGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVN 203
+ +V L WS++GN + +G ++ +R+W + + L+ H + ++ W+ +
Sbjct: 108 TNQVTCLAWSHDGNSIVTGVENGELRLWNK----TGALLNVLNFHRAPIVSVKWNKDGTH 163
Query: 204 VLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHK----------EILSGHG 253
+++ + +WNV GT + + K + G N + E +
Sbjct: 164 IISM---DVENVTILWNVISGTVMQHFELK-ETGGSSINAENHSGDGSLGVDVEWVDDDK 219
Query: 254 FSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFW 308
F G + +++ T G+L + I L + + +A D T+R W
Sbjct: 220 FVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIW 274
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 10/95 (10%)
Query: 141 KAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSL--HRFTDHCGGVKALAWS 198
+AH E+ LK+ G L S D ++IW S+ ++L HR T V +A
Sbjct: 133 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRAT-----VTDIAII 187
Query: 199 PHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAK 233
NVL+ DG I++W GT IH + K
Sbjct: 188 DRGRNVLS---ASLDGTIRLWECGTGTTIHTFNRK 219
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 10/95 (10%)
Query: 141 KAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSL--HRFTDHCGGVKALAWS 198
+AH E+ LK+ G L S D ++IW S+ ++L HR T V +A
Sbjct: 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRAT-----VTDIAII 190
Query: 199 PHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAK 233
NVL+ DG I++W GT IH + K
Sbjct: 191 DRGRNVLS---ASLDGTIRLWECGTGTTIHTFNRK 222
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 96/246 (39%), Gaps = 27/246 (10%)
Query: 46 GKVKKLLQVPGEDDYPT-SVSWSHD--AKTLAVGYMDSKLQLWDAETSK--LVRNLEGHH 100
G+ KL+ + P V W+H LA D K+ +W E + + H
Sbjct: 40 GETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHS 99
Query: 101 RRVATSSW-NHWNGHILTSGSKDKSIINHDVRVSNNVTS--CIKAHSGEVCGLKW----- 152
V + W H G +L S D + + + N TS I AH+ V W
Sbjct: 100 ASVNSVQWAPHEYGPMLLVASSDGKVSVVEFK-ENGTTSPIIIDAHAIGVNSASWAPATI 158
Query: 153 --------SNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTD-HCGGVKALAWSPHQVN 203
+ E +GG DN+V+IW+ + + + L + H V+ +AWSP +
Sbjct: 159 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLL 218
Query: 204 VLATGGGREDGCIKIW--NVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGN 261
+D IW + ++G + + + + W LSG+ + SG N
Sbjct: 219 RSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWS--LSGNVLALSGGDN 276
Query: 262 KLCLWK 267
K+ LWK
Sbjct: 277 KVTLWK 282
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 70/178 (39%), Gaps = 31/178 (17%)
Query: 68 HDA------KTLAVGYMDSKLQLWDAE--TSKLVRNLEGHHRRVATSSWNHWN-GHILTS 118
HDA K +A D +++++ E T KL+ L GH V W H G IL S
Sbjct: 13 HDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILAS 72
Query: 119 GSKDKSII---NHDVRVSNNVTSCIKAHSGEVCGLKWS--NEGNLLASGGDDNVVRIWER 173
S D ++ + R S + HS V ++W+ G +L D V + E
Sbjct: 73 CSYDGKVMIWKEENGRWSQIAVHAV--HSASVNSVQWAPHEYGPMLLVASSDGKVSVVEF 130
Query: 174 SKMSSSKSLHRFTDHCGGVKALAWSPHQVNV------------LATGGGREDGCIKIW 219
+ ++ + H GV + +W+P + TGG D +KIW
Sbjct: 131 KENGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA--DNLVKIW 185
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 10/118 (8%)
Query: 67 SHDAKTLAVGYMDSKLQLW----DAETSKLVRNLEGHHRRVATSSWNH--WNGHILTSGS 120
+ +++ G D+ +++W DA+T L LEGH V +W+ + S S
Sbjct: 167 TKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVS 226
Query: 121 KDKSII--NHDVRVSNNVTSCIKAHSGE--VCGLKWSNEGNLLASGGDDNVVRIWERS 174
+D++ I D + +K + WS GN+LA G DN V +W+ +
Sbjct: 227 QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 96/246 (39%), Gaps = 27/246 (10%)
Query: 46 GKVKKLLQVPGEDDYPT-SVSWSHD--AKTLAVGYMDSKLQLWDAETSK--LVRNLEGHH 100
G+ KL+ + P V W+H LA D K+ +W E + + H
Sbjct: 40 GETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHS 99
Query: 101 RRVATSSW-NHWNGHILTSGSKDKSIINHDVRVSNNVTS--CIKAHSGEVCGLKW----- 152
V + W H G +L S D + + + N TS I AH+ V W
Sbjct: 100 ASVNSVQWAPHEYGPLLLVASSDGKVSVVEFK-ENGTTSPIIIDAHAIGVNSASWAPATI 158
Query: 153 --------SNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTD-HCGGVKALAWSPHQVN 203
+ E +GG DN+V+IW+ + + + L + H V+ +AWSP +
Sbjct: 159 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLL 218
Query: 204 VLATGGGREDGCIKIW--NVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGN 261
+D IW + ++G + + + + W LSG+ + SG N
Sbjct: 219 RSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWS--LSGNVLALSGGDN 276
Query: 262 KLCLWK 267
K+ LWK
Sbjct: 277 KVTLWK 282
Score = 35.0 bits (79), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 67/169 (39%), Gaps = 25/169 (14%)
Query: 71 KTLAVGYMDSKLQLWDAE--TSKLVRNLEGHHRRVATSSWNHWN-GHILTSGSKDKSII- 126
K LA D +++++ E T KL+ L GH V W H G IL S S D ++
Sbjct: 22 KRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81
Query: 127 --NHDVRVSNNVTSCIKAHSGEVCGLKWS--NEGNLLASGGDDNVVRIWERSKMSSSKSL 182
+ R S + HS V ++W+ G LL D V + E K + + S
Sbjct: 82 WKEENGRWSQIAVHAV--HSASVNSVQWAPHEYGPLLLVASSDGKVSVVEF-KENGTTSP 138
Query: 183 HRFTDHCGGVKALAWSPHQVN------------VLATGGGREDGCIKIW 219
H GV + +W+P + TGG D +KIW
Sbjct: 139 IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA--DNLVKIW 185
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 10/118 (8%)
Query: 67 SHDAKTLAVGYMDSKLQLW----DAETSKLVRNLEGHHRRVATSSWNH--WNGHILTSGS 120
+ +++ G D+ +++W DA+T L LEGH V +W+ L S S
Sbjct: 167 TKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS 226
Query: 121 KDKSII--NHDVRVSNNVTSCIKAHSGE--VCGLKWSNEGNLLASGGDDNVVRIWERS 174
+D++ I D + +K + WS GN+LA G DN V +W+ +
Sbjct: 227 QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 96/246 (39%), Gaps = 27/246 (10%)
Query: 46 GKVKKLLQVPGEDDYPT-SVSWSHD--AKTLAVGYMDSKLQLWDAETSK--LVRNLEGHH 100
G+ KL+ + P V W+H LA D K+ +W E + + H
Sbjct: 42 GETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHS 101
Query: 101 RRVATSSW-NHWNGHILTSGSKDKSIINHDVRVSNNVTS--CIKAHSGEVCGLKW----- 152
V + W H G +L S D + + + N TS I AH+ V W
Sbjct: 102 ASVNSVQWAPHEYGPLLLVASSDGKVSVVEFK-ENGTTSPIIIDAHAIGVNSASWAPATI 160
Query: 153 --------SNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTD-HCGGVKALAWSPHQVN 203
+ E +GG DN+V+IW+ + + + L + H V+ +AWSP +
Sbjct: 161 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLL 220
Query: 204 VLATGGGREDGCIKIW--NVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGN 261
+D IW + ++G + + + + W LSG+ + SG N
Sbjct: 221 RSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWS--LSGNVLALSGGDN 278
Query: 262 KLCLWK 267
K+ LWK
Sbjct: 279 KVTLWK 284
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 70/178 (39%), Gaps = 31/178 (17%)
Query: 68 HDA------KTLAVGYMDSKLQLWDAE--TSKLVRNLEGHHRRVATSSWNHWN-GHILTS 118
HDA K LA D +++++ E T KL+ L GH V W H G IL S
Sbjct: 15 HDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILAS 74
Query: 119 GSKDKSII---NHDVRVSNNVTSCIKAHSGEVCGLKWS--NEGNLLASGGDDNVVRIWER 173
S D ++ + R S + HS V ++W+ G LL D V + E
Sbjct: 75 CSYDGKVLIWKEENGRWSQIAVHAV--HSASVNSVQWAPHEYGPLLLVASSDGKVSVVEF 132
Query: 174 SKMSSSKSLHRFTDHCGGVKALAWSPHQVN------------VLATGGGREDGCIKIW 219
K + + S H GV + +W+P + TGG D +KIW
Sbjct: 133 -KENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA--DNLVKIW 187
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 10/118 (8%)
Query: 67 SHDAKTLAVGYMDSKLQLW----DAETSKLVRNLEGHHRRVATSSWNH--WNGHILTSGS 120
+ +++ G D+ +++W DA+T L LEGH V +W+ L S S
Sbjct: 169 TKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS 228
Query: 121 KDKSII--NHDVRVSNNVTSCIKAHSGE--VCGLKWSNEGNLLASGGDDNVVRIWERS 174
+D++ I D + +K + WS GN+LA G DN V +W+ +
Sbjct: 229 QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 286
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 89/227 (39%), Gaps = 26/227 (11%)
Query: 64 VSWSHD--AKTLAVGYMDSKLQLWDAETSK--LVRNLEGHHRRVATSSW-NHWNGHILTS 118
V W+H LA D K+ +W E + + H V + W H G +L
Sbjct: 59 VDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLV 118
Query: 119 GSKDKSIINHDVRVSNNVTS--CIKAHSGEVCGLKW-------------SNEGNLLASGG 163
S D + + + N TS I AH+ V W + E +GG
Sbjct: 119 ASSDGKVSVVEFK-ENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG 177
Query: 164 DDNVVRIWERSKMSSSKSLHRFTD-HCGGVKALAWSPHQVNVLATGGGREDGCIKIW--N 220
DN+V+IW+ + + + L + H V+ +AWSP + +D IW +
Sbjct: 178 ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD 237
Query: 221 VQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWK 267
++G + + + + W LSG+ + SG NK+ LWK
Sbjct: 238 NEQGPWKKTLLKEEKFPDVLWRASWS--LSGNVLALSGGDNKVTLWK 282
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 70/178 (39%), Gaps = 31/178 (17%)
Query: 68 HDA------KTLAVGYMDSKLQLWDAE--TSKLVRNLEGHHRRVATSSWNHWN-GHILTS 118
HDA K LA D +++++ E T KL+ L GH V W H G IL S
Sbjct: 13 HDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILAS 72
Query: 119 GSKDKSII---NHDVRVSNNVTSCIKAHSGEVCGLKWS--NEGNLLASGGDDNVVRIWER 173
S D ++ + R S + HS V ++W+ G LL D V + E
Sbjct: 73 CSYDGKVLIWKEENGRWSQIAVHAV--HSASVNSVQWAPHEYGPLLLVASSDGKVSVVE- 129
Query: 174 SKMSSSKSLHRFTDHCGGVKALAWSPHQVN------------VLATGGGREDGCIKIW 219
K + + S H GV + +W+P + TGG D +KIW
Sbjct: 130 FKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA--DNLVKIW 185
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 10/118 (8%)
Query: 67 SHDAKTLAVGYMDSKLQLW----DAETSKLVRNLEGHHRRVATSSWNH--WNGHILTSGS 120
+ +++ G D+ +++W DA+T L LEGH V +W+ L S S
Sbjct: 167 TKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS 226
Query: 121 KDKSII--NHDVRVSNNVTSCIKAHSGE--VCGLKWSNEGNLLASGGDDNVVRIWERS 174
+D++ I D + +K + WS GN+LA G DN V +W+ +
Sbjct: 227 QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 79/171 (46%), Gaps = 21/171 (12%)
Query: 30 LAV-ALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDA----KTLAVGYMDSKLQL 84
LAV AL + + ++GK+ ++PG S+SW+ + +A G D ++++
Sbjct: 185 LAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRI 244
Query: 85 WDAETSKLVRNLEGHHRRVATSSWNHWNGHILT---------SGSKDKSIINHDVRVSNN 135
+ K+ L + ++ N ++ S +++K+ + +++V
Sbjct: 245 F-----KITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQV--E 297
Query: 136 VTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFT 186
+ S H+GEV + W+ G +L+S GDD VR+W+ + + K + T
Sbjct: 298 LLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMSVIT 348
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 79/171 (46%), Gaps = 21/171 (12%)
Query: 30 LAV-ALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDA----KTLAVGYMDSKLQL 84
LAV AL + + ++GK+ ++PG S+SW+ + +A G D ++++
Sbjct: 183 LAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRI 242
Query: 85 WDAETSKLVRNLEGHHRRVATSSWNHWNGHILT---------SGSKDKSIINHDVRVSNN 135
+ K+ L + ++ N ++ S +++K+ + +++V
Sbjct: 243 F-----KITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQV--E 295
Query: 136 VTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFT 186
+ S H+GEV + W+ G +L+S GDD VR+W+ + + K + T
Sbjct: 296 LLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMSVIT 346
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 89/236 (37%), Gaps = 40/236 (16%)
Query: 64 VSWSHD--AKTLAVGYMDSKLQLWDAETSKLVRNLE--GHHRRVATSSW-NHWNGHILTS 118
V+W+H LA D K+ +W E ++ E GH V + W H G IL
Sbjct: 63 VAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILAC 122
Query: 119 GSKDKSI--INHDVRVSNNVTSCIKAHSGEVCGLKWS-----------------NEGNLL 159
GS D +I + + V AH+ + W+ N
Sbjct: 123 GSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRF 182
Query: 160 ASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPH-QVNVLATGGGREDGCIKI 218
ASGG DN++++W+ + K + H V+ +AW+P + +DG + I
Sbjct: 183 ASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFI 242
Query: 219 W-------NVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWK 267
W N +H + + W H ++ + + SG NK+ LWK
Sbjct: 243 WTCDDASSNTWSPKLLHKFN------DVVW--HVSWSITANILAVSGGDNKVTLWK 290
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 95/246 (38%), Gaps = 27/246 (10%)
Query: 46 GKVKKLLQVPGEDDYPT-SVSWSHD--AKTLAVGYMDSKLQLWDAETSK--LVRNLEGHH 100
G+ KL+ + P V W+H LA D K+ +W E + + H
Sbjct: 40 GETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVXIWKEENGRWSQIAVHAVHS 99
Query: 101 RRVATSSW-NHWNGHILTSGSKDKSIINHDVRVSNNVTS--CIKAHSGEVCGLKW----- 152
V + W H G L S D + + + N TS I AH+ V W
Sbjct: 100 ASVNSVQWAPHEYGPXLLVASSDGKVSVVEFK-ENGTTSPIIIDAHAIGVNSASWAPATI 158
Query: 153 --------SNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTD-HCGGVKALAWSPHQVN 203
+ E +GG DN+V+IW+ + + + L + H V+ +AWSP +
Sbjct: 159 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLL 218
Query: 204 VLATGGGREDGCIKIW--NVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGN 261
+D IW + ++G + + + + W LSG+ + SG N
Sbjct: 219 RSYXASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWS--LSGNVLALSGGDN 276
Query: 262 KLCLWK 267
K+ LWK
Sbjct: 277 KVTLWK 282
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 49/129 (37%), Gaps = 32/129 (24%)
Query: 67 SHDAKTLAVGYMDSKLQLW----DAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKD 122
+ +++ G D+ +++W DA+T L LEGH V +W S
Sbjct: 167 TKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAW-----------SPT 215
Query: 123 KSIINHDVRVSNNVTSCIKAHSGEVCGLK-----------------WSNEGNLLASGGDD 165
+ ++ VS + T I E K WS GN+LA G D
Sbjct: 216 VLLRSYXASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGD 275
Query: 166 NVVRIWERS 174
N V +W+ +
Sbjct: 276 NKVTLWKEN 284
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 74/157 (47%), Gaps = 21/157 (13%)
Query: 30 LAV-ALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDA----KTLAVGYMDSKLQL 84
LAV AL + + ++GK+ ++PG S+SW+ + +A G D ++++
Sbjct: 185 LAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRI 244
Query: 85 WDAETSKLVRNLEGHHRRVATSSWNHWNGHILT---------SGSKDKSIINHDVRVSNN 135
+ K+ L + ++ N ++ S +++K+ + +++V
Sbjct: 245 F-----KITEKLSPLASEESLTNSNXFDNSADVDXDAQGRSDSNTEEKAELQSNLQV--E 297
Query: 136 VTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWE 172
+ S H+GEV + W+ G +L+S GDD VR+W+
Sbjct: 298 LLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWK 334
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 7/81 (8%)
Query: 199 PHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASG 258
P+Q +V+ATGG +DG + IW+V++GT + KA + W H H F+ S
Sbjct: 246 PNQQHVVATGG--QDGMLSIWDVRQGTMPVSL-LKAHEAEM-WEVHFHPSNPEHLFTCSE 301
Query: 259 DGNKLCLWKYPNMTKVGELQS 279
DG+ LW + T V E S
Sbjct: 302 DGS---LWHWDASTDVPEKSS 319
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 103/267 (38%), Gaps = 38/267 (14%)
Query: 57 EDDYPTSVSWSHDAKTLAVGYMDSKLQLWD--AETSKLVRNLEGHHRRVATSSWNHWNGH 114
D+Y S D TL VG S L +WD A T ++ L + + +
Sbjct: 96 RDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DSK 154
Query: 115 ILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERS 174
+ S D +I D+ + + + H+ + SN+G L +GG DN VR W+
Sbjct: 155 VCFSCCSDGNIAVWDLH-NQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLR 213
Query: 175 KMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGG----GREDGCIKIWNVQKGTCIHGI 230
+ + H FT + +L + P TG G E +++ +V K
Sbjct: 214 EGRQLQQ-HDFTSQ---IFSLGYCP-------TGEWLAVGMESSNVEVLHVNKPD----- 257
Query: 231 DAKAQICGLEWNRHHKEILS------GHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRI 284
K Q+ + H +LS G F ++G N L W+ P + + + S+S +
Sbjct: 258 --KYQL-----HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSS-V 309
Query: 285 LDLSQSPDGLTVATAGADETIRFWEAF 311
L S D + T D+ +E
Sbjct: 310 LSCDISVDDKYIVTGSGDKKATVYEVI 336
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 40/105 (38%), Gaps = 5/105 (4%)
Query: 207 TGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLW 266
TGG GC+K+W++ + + + R K + G G+ + L +W
Sbjct: 68 TGG---KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIW 124
Query: 267 KY--PNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWE 309
P EL SS L+ SPD + +D I W+
Sbjct: 125 DLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWD 169
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 35.0 bits (79), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 63/166 (37%), Gaps = 35/166 (21%)
Query: 27 NNVLAVAL--GPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQL 84
N +AV L G + ++K + +V L+ P P+ +S S +A G + K+ L
Sbjct: 456 QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAK-PSYISISPSETYIAAGDVXGKILL 514
Query: 85 WDAETSKLVRNLEGHHRRVATSSWNHWNGHI---------------------LTSGSKDK 123
+D ++ R V TS W I + +GS D
Sbjct: 515 YDLQS-----------REVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDT 563
Query: 124 SIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVR 169
+I + V+ + + AH V L W L++SG D + R
Sbjct: 564 NIFIYSVKRPXKIIKALNAHKDGVNNLLWETPSTLVSSGADACIKR 609
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 63/166 (37%), Gaps = 35/166 (21%)
Query: 27 NNVLAVAL--GPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQL 84
N +AV L G + ++K + +V L+ P P+ +S S +A G + K+ L
Sbjct: 456 QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAK-PSYISISPSETYIAAGDVMGKILL 514
Query: 85 WDAETSKLVRNLEGHHRRVATSSWNHWNGHI---------------------LTSGSKDK 123
+D ++ R V TS W I + +GS D
Sbjct: 515 YDLQS-----------REVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDT 563
Query: 124 SIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVR 169
+I + V+ + + AH V L W L++SG D + R
Sbjct: 564 NIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGADACIKR 609
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Query: 143 HSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQV 202
H V L ++G SGG D V++W+ S+ + KS + H V +A P +
Sbjct: 138 HDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKS---YNAHSSEVNCVAACPGKD 194
Query: 203 NVLATGGGREDGCIKIWNVQKGTCIHGID 231
+ + G EDG I +W+ +K ID
Sbjct: 195 TIFLSCG--EDGRILLWDTRKPKPATRID 221
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 46/118 (38%), Gaps = 5/118 (4%)
Query: 38 LFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAK--TLAVGYMDSKLQLWDAETSKLVRN 95
+ LW K + D PTSV+W H K T A G + L + + +
Sbjct: 206 ILLWDTRKPKPATRIDFCASDTIPTSVTW-HPEKDDTFACGDETGNVSLVNIKNPDSAQT 264
Query: 96 LEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWS 153
H + + ++++ + L S S+D ++ D S +H V G+ WS
Sbjct: 265 SAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL--SHRDFVTGVAWS 320
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 57/139 (41%), Gaps = 23/139 (16%)
Query: 152 WSNEGN----LLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLAT 207
W+ + N LLA G ++RI M K + H + L + P N+L +
Sbjct: 72 WTYDSNTSHPLLAVAGSRGIIRIINPITMQCIK---HYVGHGNAINELKFHPRDPNLLLS 128
Query: 208 GGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILS------GHGFSASGDGN 261
+D +++WN+Q T + A G+E H E+LS G + G +
Sbjct: 129 VS--KDHALRLWNIQTDTLV------AIFGGVE--GHRDEVLSADYDLLGEKIMSCGMDH 178
Query: 262 KLCLWKYPNMTKVGELQSS 280
L LW+ + + ++ S
Sbjct: 179 SLKLWRINSKRMMNAIKES 197
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 53/126 (42%), Gaps = 23/126 (18%)
Query: 152 WSNEGN----LLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLAT 207
W+ + N LLA G ++RI M + + + H + L + P N+L +
Sbjct: 113 WTYDSNTSHPLLAVAGSRGIIRIINPITM---QCIKHYVGHGNAINELKFHPRDPNLLLS 169
Query: 208 GGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILS------GHGFSASGDGN 261
+D +++WN+Q T + A G+E H E+LS G + G +
Sbjct: 170 VS--KDHALRLWNIQTDTLV------AIFGGVE--GHRDEVLSADYDLLGEKIMSCGMDH 219
Query: 262 KLCLWK 267
L LW+
Sbjct: 220 SLKLWR 225
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 57/139 (41%), Gaps = 23/139 (16%)
Query: 152 WSNEGN----LLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLAT 207
W+ + N LLA G ++RI M K + H + L + P N+L +
Sbjct: 76 WTYDSNTSHPLLAVAGSRGIIRIINPITMQCIK---HYVGHGNAINELKFHPRDPNLLLS 132
Query: 208 GGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILS------GHGFSASGDGN 261
+D +++WN+Q T + A G+E H E+LS G + G +
Sbjct: 133 VS--KDHALRLWNIQTDTLV------AIFGGVE--GHRDEVLSADYDLLGEKIMSCGMDH 182
Query: 262 KLCLWKYPNMTKVGELQSS 280
L LW+ + + ++ S
Sbjct: 183 SLKLWRINSKRMMNAIKES 201
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 57/139 (41%), Gaps = 23/139 (16%)
Query: 152 WSNEGN----LLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLAT 207
W+ + N LLA G ++RI M K + H + L + P N+L +
Sbjct: 76 WTYDSNTSHPLLAVAGSRGIIRIINPITMQCIK---HYVGHGNAINELKFHPRDPNLLLS 132
Query: 208 GGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILS------GHGFSASGDGN 261
+D +++WN+Q T + A G+E H E+LS G + G +
Sbjct: 133 VS--KDHALRLWNIQTDTLV------AIFGGVE--GHRDEVLSADYDLLGEKIMSCGMDH 182
Query: 262 KLCLWKYPNMTKVGELQSS 280
L LW+ + + ++ S
Sbjct: 183 SLKLWRINSKRMMNAIKES 201
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 58/151 (38%), Gaps = 3/151 (1%)
Query: 58 DDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILT 117
DD ++VS G D +++WD ++ + H +V + + +
Sbjct: 127 DDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFL 186
Query: 118 SGSKDKSIINHDVRVSNNVTSCIKAHSGEV-CGLKWSNEGNLLASGGDDNVVRIWERSKM 176
S S+D I+ D R + + G + L W + + + GD+N +K
Sbjct: 187 SCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKS 246
Query: 177 SSSKSLHRFTDHCGGVKALAWSPHQVNVLAT 207
+S C V L +SPH V LA+
Sbjct: 247 TSCVLSSAVHSQC--VTGLVFSPHSVPFLAS 275
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 68 HDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIIN 127
H LA D L + D+ S+L R+ + H V ++W+ N +LT+ D +++
Sbjct: 268 HSVPFLASLSEDCSLAVLDSSLSELFRS-QAHRDFVRDATWSPLNHSLLTTVGWDHQVVH 326
Query: 128 HDV 130
H V
Sbjct: 327 HVV 329
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 10/70 (14%)
Query: 202 VNVLATG----GGREDGCIKIWNVQKGTCIHGIDA-KAQICGLEWNRHHKEILSGHGFSA 256
V+VL++G G +D CIK+W++ + + A AQ+ + + H + F +
Sbjct: 133 VSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSV-----FLS 187
Query: 257 SGDGNKLCLW 266
+ N++ LW
Sbjct: 188 CSEDNRILLW 197
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 57/139 (41%), Gaps = 23/139 (16%)
Query: 152 WSNEGN----LLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLAT 207
W+ + N LLA G ++RI M K + H + L + P N+L +
Sbjct: 77 WTYDSNTSHPLLAVAGSRGIIRIINPITMQCIK---HYVGHGNAINELKFHPRDPNLLLS 133
Query: 208 GGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILS------GHGFSASGDGN 261
+D +++WN+Q T + A G+E H E+LS G + G +
Sbjct: 134 VS--KDHALRLWNIQTDTLV------AIFGGVE--GHRDEVLSADYDLLGEKIMSCGMDH 183
Query: 262 KLCLWKYPNMTKVGELQSS 280
L LW+ + + ++ S
Sbjct: 184 SLKLWRINSKRMMNAIKES 202
>pdb|1Z1N|X Chain X, Crystal Structure Of The Sixteen Heme Cytochrome From
Desulfovibrio Gigas
Length = 560
Score = 31.2 bits (69), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 39/98 (39%), Gaps = 21/98 (21%)
Query: 56 GEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRV---------ATS 106
+D+ P +V + + L + YMD K W A E HR++ +
Sbjct: 428 AKDEKPKTVPLENVPEKLTLNYMDEKGDEWQA--------AEFPHRKIYQKLVEEAAKSP 479
Query: 107 SWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHS 144
NH++G LT S +H+ + S N C HS
Sbjct: 480 MANHFHGDALTMCSG----CHHNAKPSLNPPKCASCHS 513
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 30.8 bits (68), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 56/113 (49%), Gaps = 10/113 (8%)
Query: 113 GHILTSGSKDKSIINHDVRVS-NNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIW 171
G+ L +GS + +V+ S + + H+G V + WS++G+ + + D ++W
Sbjct: 54 GNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMW 113
Query: 172 ERSKMSSSKSLHRFTDHCGGVKALAW--SPHQVNVLATGGGREDGCIKIWNVQ 222
+ +SS++++ + H VK + W +P+ V+ G D +K W+ +
Sbjct: 114 D---LSSNQAI-QIAQHDAPVKTIHWIKAPNYSCVMT---GSWDKTLKFWDTR 159
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 64 VSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSW-NHWNGHILTSGSKD 122
V WS D + D ++WD +++ ++ + H V T W N + +GS D
Sbjct: 92 VCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWD 150
Query: 123 KSIINHDVRVSN 134
K++ D R SN
Sbjct: 151 KTLKFWDTRSSN 162
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/160 (20%), Positives = 63/160 (39%), Gaps = 37/160 (23%)
Query: 154 NEGNLLASGGDDNVVRIWERSKMS---SSKSLHRFTDHCGGVKALAWSPHQVNVLATGGG 210
+E L+A+G ++ V+I E S + + +S H ++ ++++ +SP +
Sbjct: 205 SERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDS 264
Query: 211 REDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPN 270
GCI ++ + G I L + + +
Sbjct: 265 NSFGCITLYETEFGERI---------------------------------GSLSVPTHSS 291
Query: 271 MTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEA 310
+GE S S ++ LS + G T+ +AG D +RFW+
Sbjct: 292 QASLGEFAHS-SWVMSLSFNDSGETLCSAGWDGKLRFWDV 330
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/160 (20%), Positives = 63/160 (39%), Gaps = 37/160 (23%)
Query: 154 NEGNLLASGGDDNVVRIWERSKMS---SSKSLHRFTDHCGGVKALAWSPHQVNVLATGGG 210
+E L+A+G ++ V+I E S + + +S H ++ ++++ +SP +
Sbjct: 195 SERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDS 254
Query: 211 REDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPN 270
GCI ++ + G I L + + +
Sbjct: 255 NSFGCITLYETEFGERI---------------------------------GSLSVPTHSS 281
Query: 271 MTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEA 310
+GE S S ++ LS + G T+ +AG D +RFW+
Sbjct: 282 QASLGEFAHS-SWVMSLSFNDSGETLCSAGWDGKLRFWDV 320
>pdb|1XMB|A Chain A, X-ray Structure Of Iaa-aminoacid Hydrolase From
Arabidopsis Thaliana Gene At5g56660
pdb|2Q43|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Iaa-Aminoacid Hydrolase From Arabidopsis Thaliana Gene
At5g56660
Length = 418
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 65/148 (43%), Gaps = 21/148 (14%)
Query: 149 GLKWSNE----GNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNV 204
G++W ++ G + A G D +V + + ++K LH H G L + P + +
Sbjct: 100 GVEWEHKSKIAGKMHACGHDGHVTML-----LGAAKILHEHRHHLQGTVVLIFQPAEEGL 154
Query: 205 LATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHG-FSA--SGDGN 261
RE+G +K NV+ I GI A+I + L+G G F A +G G
Sbjct: 155 SGAKKMREEGALK--NVE---AIFGIHLSARIPFGKAASRAGSFLAGAGVFEAVITGKGG 209
Query: 262 KLCLWKYPNMTKVGELQSSNSRILDLSQ 289
+ ++ + + +++S +L L Q
Sbjct: 210 HAAIPQH----TIDPVVAASSIVLSLQQ 233
>pdb|1S68|A Chain A, Structure And Mechanism Of Rna Ligase
Length = 249
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 17/97 (17%)
Query: 12 YLMEDYYSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAK 71
Y+ME + N + P+L GK ++L+++P + D SV ++
Sbjct: 136 YMMESF---------CNTFKFKMAPLL-----GRGKFEELIKLPNDLD---SVVQDYNFT 178
Query: 72 TLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSW 108
G +D+ +W+AE V EG+ + SW
Sbjct: 179 VDHAGLVDANKCVWNAEAKGEVFTAEGYVLKPCYPSW 215
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 6/88 (6%)
Query: 140 IKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSP 199
+ H + +K++ EG+LL S D+ +W +L T + ++
Sbjct: 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTK 87
Query: 200 HQVNVLATGGGREDGCIKIWNVQKGTCI 227
+ V G D IK+W+V G C+
Sbjct: 88 YCVT------GSADYSIKLWDVSNGQCV 109
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 140 IKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSP 199
+K H+G+V G+ W+ + N + + G D +W + +L + + + W+P
Sbjct: 48 LKEHNGQVTGIDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRIN-RAARCVRWAP 106
Query: 200 HQVNVLATGGGR 211
++ G R
Sbjct: 107 NEKKFAVGSGSR 118
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 158 LLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIK 217
LA+ D V+IW+ ++ S H V A +SP +L T E I+
Sbjct: 265 FLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSE---IR 321
Query: 218 IWNVQKGTCIHGI 230
+++ + C G+
Sbjct: 322 VYSASQWDCPLGL 334
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 140 IKAHSGEVCGLKWSNEGNLLASGGDDNVVRIW 171
+K H+G+V G+ W+ + N + + G D +W
Sbjct: 48 LKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVW 79
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 158 LLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIK 217
LA+ D V+IW+ ++ S H V A +SP +L T E I+
Sbjct: 265 FLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSE---IR 321
Query: 218 IWNVQKGTCIHGI 230
+++ + C G+
Sbjct: 322 VYSASQWDCPLGL 334
>pdb|2HVQ|A Chain A, Structure Of Adenylated Full-length T4 Rna Ligase 2
Length = 335
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 17/97 (17%)
Query: 12 YLMEDYYSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAK 71
Y+ME + N + P+L GK ++L+++P + D SV ++
Sbjct: 137 YMMESF---------CNTFKFKMAPLL-----GRGKFEELIKLPNDLD---SVVQDYNFT 179
Query: 72 TLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSW 108
G +D+ +W+AE V EG+ + SW
Sbjct: 180 VDHAGLVDANKCVWNAEAKGEVFTAEGYVLKPCYPSW 216
>pdb|2HVR|A Chain A, Structure Of T4 Rna Ligase 2 With Nicked 5'-Adenylated
Nucleic Acid Duplex Containing A 3'-Deoxyribonucleotide
At The Nick
pdb|2HVR|B Chain B, Structure Of T4 Rna Ligase 2 With Nicked 5'-Adenylated
Nucleic Acid Duplex Containing A 3'-Deoxyribonucleotide
At The Nick
pdb|2HVS|A Chain A, Structure Of T4 Rna Ligase 2 With Nicked 5'-Adenylated
Nucleic Acid Duplex Containing A 2'-Deoxyribonucleotide
At The Nick
pdb|2HVS|B Chain B, Structure Of T4 Rna Ligase 2 With Nicked 5'-Adenylated
Nucleic Acid Duplex Containing A 2'-Deoxyribonucleotide
At The Nick
Length = 335
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 17/97 (17%)
Query: 12 YLMEDYYSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAK 71
Y+ME + N + P+L GK ++L+++P + D SV ++
Sbjct: 137 YMMESF---------CNTFKFKMAPLL-----GRGKFEELIKLPNDLD---SVVQDYNFT 179
Query: 72 TLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSW 108
G +D+ +W+AE V EG+ + SW
Sbjct: 180 VDHAGLVDANKCVWNAEAKGEVFTAEGYVLKPCYPSW 216
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 158 LLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIK 217
LA+ D V+IW+ ++ S H V A +SP +L T E I+
Sbjct: 266 FLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSE---IR 322
Query: 218 IWNVQKGTCIHGI 230
+++ + C G+
Sbjct: 323 VYSASQWDCPLGL 335
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,572,239
Number of Sequences: 62578
Number of extensions: 493845
Number of successful extensions: 2440
Number of sequences better than 100.0: 110
Number of HSP's better than 100.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 1397
Number of HSP's gapped (non-prelim): 441
length of query: 335
length of database: 14,973,337
effective HSP length: 99
effective length of query: 236
effective length of database: 8,778,115
effective search space: 2071635140
effective search space used: 2071635140
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)