Query 019847
Match_columns 335
No_of_seqs 818 out of 1567
Neff 11.8
Searched_HMMs 46136
Date Fri Mar 29 05:00:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019847.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019847hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 2.6E-52 5.6E-57 320.3 27.1 310 8-332 107-460 (480)
2 KOG0272 U4/U6 small nuclear ri 100.0 9.8E-50 2.1E-54 309.5 23.2 282 12-309 171-458 (459)
3 KOG0305 Anaphase promoting com 100.0 3.1E-48 6.7E-53 317.2 29.3 304 3-318 164-468 (484)
4 KOG0271 Notchless-like WD40 re 100.0 7E-49 1.5E-53 301.4 23.1 274 52-333 109-419 (480)
5 KOG0286 G-protein beta subunit 100.0 1.7E-46 3.6E-51 278.7 30.6 278 15-309 54-343 (343)
6 KOG0272 U4/U6 small nuclear ri 100.0 3.6E-48 7.8E-53 300.8 21.7 264 56-332 173-439 (459)
7 KOG0279 G protein beta subunit 100.0 4.8E-46 1E-50 274.5 30.7 282 15-311 14-313 (315)
8 KOG0315 G-protein beta subunit 100.0 1.2E-43 2.6E-48 257.9 28.0 285 28-329 12-306 (311)
9 KOG0286 G-protein beta subunit 100.0 6.2E-42 1.3E-46 254.4 29.7 269 51-332 48-324 (343)
10 KOG0273 Beta-transducin family 100.0 6.7E-42 1.5E-46 269.5 30.7 283 11-311 230-523 (524)
11 KOG0295 WD40 repeat-containing 100.0 2.1E-41 4.5E-46 258.7 24.8 281 15-310 107-405 (406)
12 KOG0284 Polyadenylation factor 100.0 4.2E-42 9E-47 266.1 18.9 284 14-313 94-382 (464)
13 KOG0645 WD40 repeat protein [G 100.0 2.8E-39 6.1E-44 237.8 32.1 279 18-311 16-311 (312)
14 KOG0273 Beta-transducin family 100.0 1.9E-40 4.1E-45 261.4 27.2 306 15-331 177-501 (524)
15 KOG0263 Transcription initiati 100.0 8.3E-41 1.8E-45 278.9 25.4 253 50-316 370-654 (707)
16 KOG0296 Angio-associated migra 100.0 9E-40 2E-44 249.8 28.3 286 13-311 61-398 (399)
17 KOG0315 G-protein beta subunit 100.0 1.9E-39 4.2E-44 236.0 26.8 264 16-290 40-309 (311)
18 KOG0291 WD40-repeat-containing 100.0 5.4E-39 1.2E-43 266.7 32.3 288 15-317 306-618 (893)
19 cd00200 WD40 WD40 domain, foun 100.0 2.7E-38 5.8E-43 256.8 35.8 279 15-309 8-289 (289)
20 KOG0279 G protein beta subunit 100.0 5.7E-39 1.2E-43 237.2 28.5 255 49-319 6-270 (315)
21 KOG0318 WD40 repeat stress pro 100.0 1.8E-38 3.8E-43 253.5 32.3 305 15-331 146-581 (603)
22 KOG0285 Pleiotropic regulator 100.0 2.5E-39 5.5E-44 247.0 26.3 282 15-314 150-442 (460)
23 KOG0266 WD40 repeat-containing 100.0 7.1E-39 1.5E-43 272.7 31.8 284 16-311 159-454 (456)
24 KOG0295 WD40 repeat-containing 100.0 2.1E-40 4.6E-45 253.1 19.2 274 51-331 101-384 (406)
25 KOG0265 U5 snRNP-specific prot 100.0 1.9E-38 4.1E-43 236.7 27.6 280 15-309 46-336 (338)
26 KOG0263 Transcription initiati 100.0 2.7E-39 5.9E-44 269.9 24.6 242 15-270 377-650 (707)
27 KOG0291 WD40-repeat-containing 100.0 1.6E-37 3.4E-42 258.0 33.6 302 18-332 191-529 (893)
28 KOG0284 Polyadenylation factor 100.0 5.3E-40 1.1E-44 254.5 16.6 260 58-331 96-358 (464)
29 KOG0266 WD40 repeat-containing 100.0 6.1E-38 1.3E-42 266.9 30.0 262 57-331 158-430 (456)
30 KOG0285 Pleiotropic regulator 100.0 2E-38 4.3E-43 242.1 23.2 248 54-317 147-395 (460)
31 KOG0316 Conserved WD40 repeat- 100.0 3.1E-38 6.8E-43 228.0 23.0 260 51-325 10-271 (307)
32 KOG0281 Beta-TrCP (transducin 100.0 1.3E-39 2.9E-44 247.9 16.0 273 17-316 198-482 (499)
33 KOG0278 Serine/threonine kinas 100.0 3.7E-39 8E-44 234.8 17.2 285 14-316 12-302 (334)
34 KOG0282 mRNA splicing factor [ 100.0 5.4E-39 1.2E-43 253.9 19.5 280 15-309 213-503 (503)
35 KOG0276 Vesicle coat complex C 100.0 5.3E-38 1.2E-42 255.8 23.6 261 54-326 9-272 (794)
36 KOG0318 WD40 repeat stress pro 100.0 2.8E-36 6.1E-41 241.0 32.6 308 13-332 56-372 (603)
37 KOG0276 Vesicle coat complex C 100.0 2.2E-37 4.7E-42 252.2 26.1 278 15-306 12-294 (794)
38 KOG0319 WD40-repeat-containing 100.0 2E-37 4.4E-42 256.7 24.8 281 18-313 325-621 (775)
39 PLN00181 protein SPA1-RELATED; 100.0 1.6E-35 3.6E-40 269.9 38.9 281 15-310 482-792 (793)
40 KOG0281 Beta-TrCP (transducin 100.0 9.9E-39 2.1E-43 243.2 14.9 256 57-335 196-461 (499)
41 KOG0293 WD40 repeat-containing 100.0 4.7E-37 1E-41 238.7 24.0 277 21-313 229-515 (519)
42 KOG0277 Peroxisomal targeting 100.0 1.4E-36 3.1E-41 221.8 24.2 277 22-310 14-308 (311)
43 cd00200 WD40 WD40 domain, foun 100.0 1.1E-35 2.3E-40 241.5 32.0 266 53-332 4-270 (289)
44 KOG0319 WD40-repeat-containing 100.0 3.3E-36 7.2E-41 249.5 28.7 296 24-332 291-598 (775)
45 KOG0296 Angio-associated migra 100.0 2.7E-36 5.9E-41 230.8 26.0 272 51-332 57-377 (399)
46 KOG0306 WD40-repeat-containing 100.0 2.7E-36 5.9E-41 250.6 27.7 290 6-312 363-665 (888)
47 KOG0265 U5 snRNP-specific prot 100.0 1E-36 2.2E-41 227.5 22.7 269 49-332 38-317 (338)
48 KOG0316 Conserved WD40 repeat- 100.0 7.6E-36 1.6E-40 215.7 24.6 276 15-310 16-298 (307)
49 KOG0645 WD40 repeat protein [G 100.0 1.3E-34 2.8E-39 213.3 30.5 250 48-313 4-263 (312)
50 KOG0643 Translation initiation 100.0 6.7E-36 1.5E-40 219.8 23.2 290 15-313 9-319 (327)
51 KOG0275 Conserved WD40 repeat- 100.0 4.3E-37 9.4E-42 232.5 16.0 280 16-309 213-507 (508)
52 KOG0292 Vesicle coat complex C 100.0 1.4E-35 3E-40 250.6 26.6 287 13-313 6-323 (1202)
53 KOG0282 mRNA splicing factor [ 100.0 1.4E-36 3E-41 240.3 17.7 266 51-331 207-482 (503)
54 KOG0274 Cdc4 and related F-box 100.0 1.1E-34 2.4E-39 246.4 29.5 284 15-321 207-492 (537)
55 KOG0310 Conserved WD40 repeat- 100.0 5.4E-35 1.2E-39 231.6 24.9 283 15-314 25-312 (487)
56 KOG0277 Peroxisomal targeting 100.0 6.7E-36 1.5E-40 218.2 17.7 238 20-268 64-308 (311)
57 KOG0313 Microtubule binding pr 100.0 2.8E-34 6E-39 221.0 26.4 282 13-312 102-419 (423)
58 KOG0283 WD40 repeat-containing 100.0 5E-35 1.1E-39 246.4 24.4 243 56-315 265-580 (712)
59 KOG1446 Histone H3 (Lys4) meth 100.0 6.7E-33 1.5E-37 208.9 32.8 281 15-313 13-305 (311)
60 KOG0289 mRNA splicing factor [ 100.0 2.4E-34 5.2E-39 224.9 25.7 277 19-310 222-505 (506)
61 PTZ00421 coronin; Provisional 100.0 2.8E-33 6.1E-38 237.5 34.4 268 16-292 22-314 (493)
62 KOG0293 WD40 repeat-containing 100.0 5E-35 1.1E-39 227.5 20.9 266 53-332 219-491 (519)
63 PLN00181 protein SPA1-RELATED; 100.0 2.1E-33 4.5E-38 256.2 34.6 264 35-313 457-740 (793)
64 KOG0772 Uncharacterized conser 100.0 2.4E-34 5.3E-39 229.6 24.1 291 16-309 167-485 (641)
65 KOG0313 Microtubule binding pr 100.0 2.2E-34 4.9E-39 221.4 22.6 264 56-332 103-398 (423)
66 KOG0294 WD40 repeat-containing 100.0 5.3E-33 1.2E-37 209.1 26.3 269 28-315 3-285 (362)
67 KOG0292 Vesicle coat complex C 100.0 4E-34 8.7E-39 241.9 22.5 252 54-319 5-288 (1202)
68 KOG1446 Histone H3 (Lys4) meth 100.0 3.3E-32 7.1E-37 205.2 29.3 260 56-331 12-283 (311)
69 KOG0288 WD40 repeat protein Ti 100.0 2.1E-34 4.6E-39 223.8 16.8 276 16-309 175-459 (459)
70 KOG0306 WD40-repeat-containing 100.0 1.6E-32 3.6E-37 228.3 27.7 303 16-332 320-643 (888)
71 KOG0275 Conserved WD40 repeat- 100.0 9E-34 1.9E-38 214.6 17.3 260 56-329 211-485 (508)
72 KOG0310 Conserved WD40 repeat- 100.0 4.7E-33 1E-37 220.7 21.0 259 57-331 25-287 (487)
73 KOG0278 Serine/threonine kinas 100.0 1.1E-33 2.3E-38 206.5 14.7 265 52-332 8-276 (334)
74 KOG0647 mRNA export protein (c 100.0 1.2E-31 2.6E-36 200.7 25.9 277 5-299 17-311 (347)
75 KOG1407 WD40 repeat protein [F 100.0 2.8E-31 6.1E-36 194.9 27.3 272 14-302 18-293 (313)
76 KOG0640 mRNA cleavage stimulat 100.0 2.3E-32 5E-37 205.5 22.0 285 15-311 111-426 (430)
77 KOG1407 WD40 repeat protein [F 100.0 2.8E-32 6.2E-37 200.1 21.8 251 52-317 14-267 (313)
78 PTZ00421 coronin; Provisional 100.0 3.8E-31 8.3E-36 224.6 32.1 249 59-315 21-294 (493)
79 KOG0973 Histone transcription 100.0 1.2E-31 2.6E-36 231.7 26.9 293 15-313 12-357 (942)
80 PTZ00420 coronin; Provisional 100.0 2.1E-30 4.5E-35 221.2 34.2 246 34-293 52-318 (568)
81 KOG0264 Nucleosome remodeling 100.0 9.4E-32 2E-36 211.6 23.5 250 55-312 121-405 (422)
82 KOG1036 Mitotic spindle checkp 100.0 2.9E-30 6.3E-35 193.9 30.0 272 9-301 7-294 (323)
83 KOG1408 WD40 repeat protein [F 100.0 1.4E-31 3E-36 222.0 23.0 280 24-312 390-714 (1080)
84 KOG0300 WD40 repeat-containing 100.0 4.4E-31 9.6E-36 199.5 22.7 272 27-314 161-479 (481)
85 KOG1036 Mitotic spindle checkp 100.0 8.9E-31 1.9E-35 196.6 23.8 257 57-333 12-284 (323)
86 KOG0301 Phospholipase A2-activ 100.0 9.5E-31 2.1E-35 215.9 25.8 275 15-314 13-291 (745)
87 PTZ00420 coronin; Provisional 100.0 9.6E-30 2.1E-34 217.2 32.6 229 76-313 50-295 (568)
88 KOG1539 WD repeat protein [Gen 100.0 3E-30 6.5E-35 217.1 28.6 301 19-331 162-625 (910)
89 KOG0288 WD40 repeat protein Ti 100.0 1.8E-32 4E-37 213.1 14.1 264 52-332 169-440 (459)
90 KOG0264 Nucleosome remodeling 100.0 4.3E-31 9.2E-36 208.0 21.0 244 17-269 125-404 (422)
91 KOG0647 mRNA export protein (c 100.0 1.3E-30 2.7E-35 195.3 22.4 258 56-331 25-301 (347)
92 KOG0299 U3 snoRNP-associated p 100.0 2.2E-30 4.8E-35 204.2 24.8 283 12-311 138-456 (479)
93 KOG0269 WD40 repeat-containing 100.0 3.5E-31 7.6E-36 221.0 20.4 290 16-314 39-343 (839)
94 KOG0643 Translation initiation 100.0 5.5E-30 1.2E-34 188.8 21.8 268 52-332 4-296 (327)
95 KOG0646 WD40 repeat protein [G 100.0 5.8E-30 1.3E-34 202.2 23.0 282 36-331 18-327 (476)
96 KOG0268 Sof1-like rRNA process 100.0 2.2E-31 4.9E-36 204.0 14.6 261 53-332 61-324 (433)
97 TIGR03866 PQQ_ABC_repeats PQQ- 100.0 4.8E-28 1E-32 198.3 34.3 272 29-319 4-287 (300)
98 KOG0973 Histone transcription 100.0 1E-29 2.3E-34 219.9 25.3 267 57-332 12-334 (942)
99 KOG0283 WD40 repeat-containing 100.0 6.9E-30 1.5E-34 215.5 23.6 243 14-270 265-577 (712)
100 KOG0268 Sof1-like rRNA process 100.0 1.4E-30 3E-35 199.6 17.5 276 16-314 66-348 (433)
101 KOG0308 Conserved WD40 repeat- 100.0 1.5E-30 3.3E-35 213.3 18.7 250 68-327 35-301 (735)
102 KOG0308 Conserved WD40 repeat- 100.0 1.5E-30 3.3E-35 213.3 18.1 273 28-312 39-328 (735)
103 KOG0640 mRNA cleavage stimulat 100.0 2.5E-30 5.4E-35 194.7 17.8 267 52-329 106-402 (430)
104 KOG0274 Cdc4 and related F-box 100.0 2.4E-29 5.1E-34 214.0 24.8 252 57-331 207-462 (537)
105 KOG0639 Transducin-like enhanc 100.0 9E-30 2E-34 203.2 20.8 283 12-310 415-703 (705)
106 KOG0641 WD40 repeat protein [G 100.0 2.3E-27 4.9E-32 171.3 30.4 288 13-311 29-349 (350)
107 KOG0299 U3 snoRNP-associated p 100.0 7.6E-29 1.6E-33 195.6 24.0 253 52-319 136-418 (479)
108 KOG4328 WD40 protein [Function 100.0 5E-29 1.1E-33 196.5 22.9 287 15-311 185-495 (498)
109 KOG1408 WD40 repeat protein [F 100.0 1.3E-28 2.7E-33 204.6 25.6 300 20-332 328-692 (1080)
110 KOG0289 mRNA splicing factor [ 100.0 9.8E-29 2.1E-33 193.7 23.2 261 59-331 220-484 (506)
111 KOG1332 Vesicle coat complex C 100.0 4.8E-29 1E-33 181.5 19.2 255 55-313 8-288 (299)
112 KOG0641 WD40 repeat protein [G 100.0 3.4E-27 7.3E-32 170.4 28.5 245 56-314 30-306 (350)
113 KOG0321 WD40 repeat-containing 100.0 1.6E-28 3.4E-33 201.2 24.4 282 27-317 64-397 (720)
114 KOG4283 Transcription-coupled 100.0 2.4E-28 5.2E-33 182.8 23.1 287 14-311 41-365 (397)
115 KOG0305 Anaphase promoting com 100.0 1.6E-28 3.4E-33 201.9 24.3 239 16-271 217-463 (484)
116 KOG1332 Vesicle coat complex C 100.0 7E-29 1.5E-33 180.7 19.6 240 21-269 18-286 (299)
117 KOG0772 Uncharacterized conser 100.0 7.3E-29 1.6E-33 198.5 20.8 258 51-319 160-453 (641)
118 KOG1274 WD40 repeat protein [G 100.0 7.1E-28 1.5E-32 205.0 26.5 241 56-312 11-263 (933)
119 KOG0302 Ribosome Assembly prot 100.0 2.8E-28 6.1E-33 187.9 21.9 223 27-251 164-426 (440)
120 KOG2096 WD40 repeat protein [G 100.0 4.9E-28 1.1E-32 182.9 22.3 259 37-309 62-400 (420)
121 KOG0269 WD40 repeat-containing 100.0 2.4E-29 5.2E-34 210.1 16.7 247 17-270 88-341 (839)
122 KOG0294 WD40 repeat-containing 100.0 8.4E-27 1.8E-31 175.9 24.9 257 12-289 39-305 (362)
123 KOG0300 WD40 repeat-containing 100.0 1.5E-27 3.2E-32 180.5 20.4 270 47-331 137-452 (481)
124 KOG1274 WD40 repeat protein [G 100.0 9.6E-27 2.1E-31 198.2 27.5 272 19-308 16-297 (933)
125 KOG4283 Transcription-coupled 100.0 1.2E-27 2.5E-32 179.1 19.4 222 56-319 41-284 (397)
126 KOG1273 WD40 repeat protein [G 100.0 4.3E-27 9.2E-32 177.6 22.3 278 19-313 26-324 (405)
127 KOG2055 WD40 repeat protein [G 100.0 1.2E-26 2.5E-31 183.5 25.0 284 14-311 211-512 (514)
128 KOG2106 Uncharacterized conser 100.0 3.7E-25 8.1E-30 177.0 31.9 278 16-312 200-522 (626)
129 KOG0267 Microtubule severing p 100.0 6.6E-29 1.4E-33 206.1 10.4 248 34-303 12-260 (825)
130 KOG4378 Nuclear protein COP1 [ 100.0 6.1E-27 1.3E-31 186.9 20.8 262 19-293 37-305 (673)
131 KOG0270 WD40 repeat-containing 100.0 7.3E-27 1.6E-31 183.7 19.8 238 28-275 194-455 (463)
132 KOG2048 WD40 repeat protein [G 100.0 2E-25 4.3E-30 184.3 28.8 281 18-312 27-320 (691)
133 KOG4378 Nuclear protein COP1 [ 100.0 2E-26 4.3E-31 184.0 21.7 291 28-332 4-302 (673)
134 KOG2445 Nuclear pore complex c 100.0 2.1E-25 4.5E-30 167.9 25.7 253 55-312 10-319 (361)
135 KOG2106 Uncharacterized conser 100.0 4.2E-25 9.2E-30 176.7 28.9 298 15-332 153-500 (626)
136 KOG0646 WD40 repeat protein [G 100.0 2.4E-26 5.3E-31 181.9 20.8 268 28-311 52-350 (476)
137 KOG0267 Microtubule severing p 99.9 5.7E-28 1.2E-32 200.6 10.2 228 15-252 27-257 (825)
138 KOG0270 WD40 repeat-containing 99.9 2.7E-25 5.8E-30 175.0 24.3 251 59-320 174-458 (463)
139 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 5.4E-24 1.2E-28 174.3 32.8 258 19-291 33-300 (300)
140 KOG0301 Phospholipase A2-activ 99.9 8.3E-26 1.8E-30 187.0 21.5 239 51-311 7-249 (745)
141 KOG1034 Transcriptional repres 99.9 1.3E-25 2.9E-30 170.4 20.9 284 17-311 39-383 (385)
142 KOG1188 WD40 repeat protein [G 99.9 1.9E-25 4.2E-30 170.3 20.2 275 28-313 42-348 (376)
143 KOG0639 Transducin-like enhanc 99.9 4.5E-26 9.7E-31 182.3 15.9 240 13-268 462-703 (705)
144 KOG0302 Ribosome Assembly prot 99.9 2.2E-25 4.8E-30 172.1 19.1 210 98-315 149-382 (440)
145 KOG2048 WD40 repeat protein [G 99.9 6E-24 1.3E-28 175.7 28.8 244 58-315 25-279 (691)
146 KOG1539 WD repeat protein [Gen 99.9 3E-24 6.4E-29 181.4 26.5 278 17-312 203-649 (910)
147 KOG4328 WD40 protein [Function 99.9 5.7E-25 1.2E-29 173.8 20.7 254 56-319 184-458 (498)
148 KOG0650 WD40 repeat nucleolar 99.9 1.2E-24 2.7E-29 177.4 21.6 245 51-309 393-678 (733)
149 KOG0307 Vesicle coat complex C 99.9 1.3E-25 2.8E-30 195.8 15.2 270 35-314 38-330 (1049)
150 KOG0642 Cell-cycle nuclear pro 99.9 3.2E-25 6.9E-30 179.6 16.3 262 51-323 287-573 (577)
151 KOG2055 WD40 repeat protein [G 99.9 7.5E-24 1.6E-28 167.7 22.1 261 58-332 213-491 (514)
152 KOG1538 Uncharacterized conser 99.9 4.8E-24 1E-28 176.5 21.8 276 18-313 14-295 (1081)
153 KOG1063 RNA polymerase II elon 99.9 1.3E-23 2.7E-28 174.2 24.2 291 33-328 166-623 (764)
154 KOG1063 RNA polymerase II elon 99.9 3E-23 6.4E-28 172.1 26.0 294 12-313 263-650 (764)
155 KOG1273 WD40 repeat protein [G 99.9 8.7E-24 1.9E-28 159.9 20.7 248 61-321 26-290 (405)
156 KOG1009 Chromatin assembly com 99.9 7.1E-24 1.5E-28 165.3 20.0 251 58-315 13-376 (434)
157 PRK11028 6-phosphogluconolacto 99.9 7.5E-22 1.6E-26 163.3 32.7 271 30-313 6-306 (330)
158 KOG2445 Nuclear pore complex c 99.9 1.6E-22 3.6E-27 152.4 24.8 243 18-269 17-318 (361)
159 KOG2919 Guanine nucleotide-bin 99.9 1.7E-22 3.7E-27 153.4 24.0 262 59-330 50-347 (406)
160 KOG1587 Cytoplasmic dynein int 99.9 1.4E-22 3E-27 171.7 25.5 267 36-313 222-518 (555)
161 KOG2919 Guanine nucleotide-bin 99.9 1.6E-22 3.4E-27 153.6 23.1 271 18-302 51-361 (406)
162 KOG0321 WD40 repeat-containing 99.9 3.4E-23 7.3E-28 170.3 20.9 261 62-331 53-368 (720)
163 KOG0307 Vesicle coat complex C 99.9 2.3E-24 5E-29 188.1 14.8 251 12-272 60-330 (1049)
164 KOG2096 WD40 repeat protein [G 99.9 2.9E-22 6.2E-27 152.0 23.8 240 15-267 85-400 (420)
165 KOG0650 WD40 repeat nucleolar 99.9 5.3E-22 1.1E-26 162.3 23.8 275 15-308 399-732 (733)
166 KOG0290 Conserved WD40 repeat- 99.9 6.4E-21 1.4E-25 142.9 24.9 280 17-307 45-361 (364)
167 KOG1445 Tumor-specific antigen 99.9 3E-22 6.4E-27 165.1 19.1 126 18-144 81-213 (1012)
168 KOG0290 Conserved WD40 repeat- 99.9 9.6E-22 2.1E-26 147.3 20.1 237 11-251 91-354 (364)
169 KOG1007 WD repeat protein TSSC 99.9 7.3E-22 1.6E-26 147.8 19.0 252 37-312 94-362 (370)
170 KOG0322 G-protein beta subunit 99.9 4E-22 8.7E-27 147.3 16.0 249 50-310 6-322 (323)
171 KOG1007 WD repeat protein TSSC 99.9 8.8E-22 1.9E-26 147.4 17.5 202 18-222 125-361 (370)
172 KOG1517 Guanine nucleotide bin 99.9 7.8E-21 1.7E-25 165.0 25.4 286 19-315 1067-1385(1387)
173 KOG4227 WD40 repeat protein [G 99.9 2.8E-21 6.1E-26 150.7 20.0 258 53-313 51-389 (609)
174 COG2319 FOG: WD40 repeat [Gene 99.9 8.3E-20 1.8E-24 156.9 31.4 265 54-330 61-335 (466)
175 KOG0303 Actin-binding protein 99.9 2.7E-21 5.8E-26 150.6 18.9 228 35-273 56-298 (472)
176 KOG0303 Actin-binding protein 99.9 8.4E-21 1.8E-25 147.9 21.1 235 69-314 43-297 (472)
177 COG2319 FOG: WD40 repeat [Gene 99.9 9.5E-19 2.1E-23 150.3 36.2 285 14-314 63-362 (466)
178 KOG1034 Transcriptional repres 99.9 4.2E-21 9.1E-26 146.2 17.5 228 28-269 107-383 (385)
179 KOG1963 WD40 repeat protein [G 99.9 1.2E-19 2.5E-24 154.9 27.9 287 19-313 163-540 (792)
180 KOG1523 Actin-related protein 99.9 5E-20 1.1E-24 139.9 21.7 232 17-252 11-268 (361)
181 KOG0649 WD40 repeat protein [G 99.9 4.8E-20 1E-24 135.0 20.7 235 60-314 12-277 (325)
182 KOG2110 Uncharacterized conser 99.9 1E-18 2.3E-23 135.3 27.9 241 58-314 5-251 (391)
183 KOG1524 WD40 repeat-containing 99.9 2.4E-20 5.1E-25 151.0 19.6 258 19-307 17-282 (737)
184 KOG0642 Cell-cycle nuclear pro 99.9 4.2E-21 9.2E-26 155.9 15.3 253 17-282 295-574 (577)
185 PRK01742 tolB translocation pr 99.9 1.5E-19 3.4E-24 154.0 25.3 233 35-292 183-426 (429)
186 KOG1188 WD40 repeat protein [G 99.9 7.4E-20 1.6E-24 140.1 20.3 199 71-278 41-251 (376)
187 KOG0644 Uncharacterized conser 99.9 2E-21 4.3E-26 164.7 11.6 252 53-316 185-473 (1113)
188 KOG1009 Chromatin assembly com 99.9 1.6E-19 3.4E-24 141.3 20.5 246 17-273 14-376 (434)
189 KOG0649 WD40 repeat protein [G 99.9 1.9E-18 4.1E-23 126.7 24.5 270 20-309 16-314 (325)
190 KOG1523 Actin-related protein 99.9 6.3E-19 1.4E-23 134.0 21.6 226 58-293 10-261 (361)
191 KOG1524 WD40 repeat-containing 99.8 3.8E-19 8.2E-24 144.1 20.0 200 27-252 76-275 (737)
192 PRK11028 6-phosphogluconolacto 99.8 5.7E-18 1.2E-22 140.2 27.8 232 74-315 6-262 (330)
193 KOG1445 Tumor-specific antigen 99.8 7.3E-20 1.6E-24 151.2 15.9 244 22-273 587-848 (1012)
194 KOG1587 Cytoplasmic dynein int 99.8 5.2E-19 1.1E-23 150.2 21.6 244 17-270 243-517 (555)
195 PRK01742 tolB translocation pr 99.8 8.2E-19 1.8E-23 149.5 22.9 233 79-332 183-424 (429)
196 KOG1538 Uncharacterized conser 99.8 3E-19 6.5E-24 148.5 18.3 236 60-312 14-253 (1081)
197 KOG1310 WD40 repeat protein [G 99.8 1.1E-19 2.3E-24 147.7 15.0 248 51-318 43-310 (758)
198 PF02239 Cytochrom_D1: Cytochr 99.8 2.8E-17 6.1E-22 135.8 29.2 277 33-319 13-355 (369)
199 KOG2139 WD40 repeat protein [G 99.8 1.3E-17 2.8E-22 129.0 24.2 285 16-313 98-433 (445)
200 PRK03629 tolB translocation pr 99.8 3.2E-17 7E-22 139.5 28.9 240 37-292 180-428 (429)
201 KOG1963 WD40 repeat protein [G 99.8 1.4E-17 3E-22 142.5 26.0 283 22-318 22-382 (792)
202 KOG2110 Uncharacterized conser 99.8 2.1E-16 4.5E-21 122.7 29.9 274 19-313 8-332 (391)
203 KOG1334 WD40 repeat protein [G 99.8 7E-19 1.5E-23 140.9 16.4 295 11-315 137-470 (559)
204 KOG1310 WD40 repeat protein [G 99.8 5.7E-18 1.2E-22 137.8 21.5 211 11-225 45-306 (758)
205 PF10282 Lactonase: Lactonase, 99.8 1.3E-15 2.7E-20 126.3 35.4 284 29-321 2-332 (345)
206 KOG0771 Prolactin regulatory e 99.8 1.4E-18 3.1E-23 136.8 15.7 199 104-313 148-356 (398)
207 KOG2394 WD40 protein DMR-N9 [G 99.8 5.1E-18 1.1E-22 137.6 19.1 259 28-315 136-456 (636)
208 KOG1240 Protein kinase contain 99.8 4.9E-17 1.1E-21 143.8 25.9 280 21-309 1053-1431(1431)
209 KOG1272 WD40-repeat-containing 99.8 3.4E-19 7.3E-24 141.8 11.2 265 21-307 134-405 (545)
210 KOG0322 G-protein beta subunit 99.8 3.5E-18 7.6E-23 126.7 15.7 253 3-268 3-322 (323)
211 KOG2111 Uncharacterized conser 99.8 4.8E-16 1E-20 118.4 26.8 244 60-318 7-263 (346)
212 KOG1517 Guanine nucleotide bin 99.8 2.1E-17 4.6E-22 144.1 21.8 233 28-272 1125-1384(1387)
213 PF08662 eIF2A: Eukaryotic tra 99.8 2.9E-17 6.2E-22 123.7 19.7 163 148-319 9-187 (194)
214 PRK04922 tolB translocation pr 99.8 1.4E-16 2.9E-21 136.3 26.3 240 36-291 184-432 (433)
215 PRK04922 tolB translocation pr 99.8 9.8E-17 2.1E-21 137.1 25.4 236 80-331 184-430 (433)
216 KOG0644 Uncharacterized conser 99.8 3.4E-19 7.4E-24 151.4 10.0 235 19-272 193-471 (1113)
217 KOG2139 WD40 repeat protein [G 99.8 5.4E-17 1.2E-21 125.6 20.1 240 59-314 99-386 (445)
218 PRK03629 tolB translocation pr 99.8 1.1E-15 2.3E-20 130.3 29.4 236 81-332 180-426 (429)
219 PRK02889 tolB translocation pr 99.8 2.9E-16 6.3E-21 133.8 26.0 245 36-292 176-425 (427)
220 PRK05137 tolB translocation pr 99.8 5.3E-16 1.1E-20 132.8 27.7 241 36-292 182-433 (435)
221 KOG1334 WD40 repeat protein [G 99.8 5.5E-18 1.2E-22 135.8 14.2 262 52-321 136-434 (559)
222 KOG0771 Prolactin regulatory e 99.8 1.5E-17 3.2E-22 131.1 16.0 197 62-269 148-354 (398)
223 KOG3881 Uncharacterized conser 99.8 8E-17 1.7E-21 125.8 18.7 222 17-245 106-343 (412)
224 KOG2315 Predicted translation 99.8 2.1E-15 4.6E-20 123.3 27.3 291 16-318 34-397 (566)
225 KOG1240 Protein kinase contain 99.8 4.1E-16 8.9E-21 138.1 24.4 257 51-316 1041-1339(1431)
226 KOG2321 WD40 repeat protein [G 99.8 6.2E-16 1.3E-20 126.7 22.5 245 56-313 49-345 (703)
227 PF08662 eIF2A: Eukaryotic tra 99.8 4.1E-16 8.8E-21 117.5 20.0 164 104-276 9-185 (194)
228 PRK02889 tolB translocation pr 99.8 1.9E-15 4.2E-20 128.8 26.7 239 80-332 176-423 (427)
229 KOG2111 Uncharacterized conser 99.8 2.3E-14 4.9E-19 109.5 29.0 276 20-312 9-323 (346)
230 PRK05137 tolB translocation pr 99.8 4.6E-15 9.9E-20 127.1 28.5 223 80-315 182-416 (435)
231 KOG4497 Uncharacterized conser 99.8 5.8E-16 1.3E-20 118.7 20.0 274 22-307 14-428 (447)
232 KOG1354 Serine/threonine prote 99.7 4.3E-16 9.2E-21 120.0 18.9 248 58-315 25-363 (433)
233 PF02239 Cytochrom_D1: Cytochr 99.7 1.1E-14 2.4E-19 120.5 28.0 248 22-278 42-356 (369)
234 COG2706 3-carboxymuconate cycl 99.7 1.9E-13 4.1E-18 106.6 32.4 279 35-322 15-332 (346)
235 KOG2394 WD40 protein DMR-N9 [G 99.7 1.7E-16 3.6E-21 129.0 15.5 167 28-199 187-384 (636)
236 KOG4497 Uncharacterized conser 99.7 5.7E-17 1.2E-21 124.1 11.0 225 63-312 13-241 (447)
237 KOG3881 Uncharacterized conser 99.7 3.9E-15 8.5E-20 116.5 21.2 263 15-292 54-342 (412)
238 PRK01029 tolB translocation pr 99.7 2.8E-14 6E-19 121.1 27.9 249 36-293 165-426 (428)
239 TIGR02800 propeller_TolB tol-p 99.7 2.9E-14 6.4E-19 122.2 27.1 219 81-312 171-398 (417)
240 KOG1272 WD40-repeat-containing 99.7 1.3E-16 2.7E-21 127.4 11.2 232 58-310 129-361 (545)
241 KOG1409 Uncharacterized conser 99.7 3.9E-15 8.5E-20 114.7 18.1 284 15-312 25-395 (404)
242 TIGR02800 propeller_TolB tol-p 99.7 5.3E-14 1.1E-18 120.6 26.9 237 37-289 171-416 (417)
243 PRK00178 tolB translocation pr 99.7 1.9E-13 4.2E-18 117.3 29.2 238 81-332 180-426 (430)
244 KOG4227 WD40 repeat protein [G 99.7 6.3E-15 1.4E-19 115.7 18.0 242 15-268 55-386 (609)
245 PRK04792 tolB translocation pr 99.7 1.5E-13 3.3E-18 117.6 28.1 238 37-292 199-447 (448)
246 PRK00178 tolB translocation pr 99.7 1.7E-13 3.7E-18 117.6 28.3 238 37-292 180-428 (430)
247 TIGR02658 TTQ_MADH_Hv methylam 99.7 2.9E-12 6.3E-17 103.9 31.6 269 36-318 27-337 (352)
248 KOG0280 Uncharacterized conser 99.7 2E-13 4.3E-18 103.3 22.5 270 35-313 45-335 (339)
249 KOG2321 WD40 repeat protein [G 99.6 7.2E-14 1.6E-18 114.9 20.4 199 63-273 138-347 (703)
250 PF10282 Lactonase: Lactonase, 99.6 2E-11 4.3E-16 101.4 34.8 250 18-275 38-330 (345)
251 KOG0309 Conserved WD40 repeat- 99.6 1.2E-14 2.6E-19 122.8 14.8 288 16-312 24-340 (1081)
252 PRK04792 tolB translocation pr 99.6 1.4E-12 3E-17 111.7 27.3 238 81-332 199-445 (448)
253 COG4946 Uncharacterized protei 99.6 3.4E-12 7.3E-17 103.1 27.3 224 16-249 268-504 (668)
254 TIGR02658 TTQ_MADH_Hv methylam 99.6 8.8E-12 1.9E-16 101.1 28.8 230 34-277 75-338 (352)
255 COG5354 Uncharacterized protei 99.6 2.3E-12 5E-17 104.7 24.9 282 15-315 31-399 (561)
256 KOG2314 Translation initiation 99.6 3.2E-12 7E-17 105.0 25.8 287 19-315 252-577 (698)
257 PRK01029 tolB translocation pr 99.6 1.8E-12 4E-17 110.1 25.6 226 80-315 165-407 (428)
258 KOG4547 WD40 repeat-containing 99.6 7.2E-13 1.6E-17 109.4 21.1 187 28-223 7-221 (541)
259 KOG2041 WD40 repeat protein [G 99.6 5.6E-13 1.2E-17 112.7 19.5 281 12-299 10-326 (1189)
260 KOG0974 WD-repeat protein WDR6 99.6 5E-13 1.1E-17 117.1 19.5 266 28-316 18-293 (967)
261 KOG1064 RAVE (regulator of V-A 99.6 4.7E-14 1E-18 129.6 12.7 194 19-233 2211-2409(2439)
262 KOG1354 Serine/threonine prote 99.6 3.2E-12 6.9E-17 99.0 20.5 243 15-270 24-360 (433)
263 KOG0974 WD-repeat protein WDR6 99.5 2.8E-13 6.1E-18 118.6 16.0 189 22-223 95-289 (967)
264 KOG0280 Uncharacterized conser 99.5 2.2E-12 4.8E-17 97.7 17.9 189 30-224 89-286 (339)
265 KOG4547 WD40 repeat-containing 99.5 1.9E-11 4E-16 101.2 23.0 191 67-270 2-221 (541)
266 TIGR03300 assembly_YfgL outer 99.5 1.4E-10 3.1E-15 98.0 29.4 270 24-319 63-346 (377)
267 COG5170 CDC55 Serine/threonine 99.5 1.3E-12 2.7E-17 100.0 15.0 243 58-310 26-366 (460)
268 PLN02919 haloacid dehalogenase 99.5 1.7E-10 3.7E-15 108.0 31.6 242 62-315 571-892 (1057)
269 PF04762 IKI3: IKI3 family; I 99.5 2.7E-10 5.9E-15 104.7 30.3 288 17-314 76-459 (928)
270 TIGR03300 assembly_YfgL outer 99.5 1.2E-10 2.5E-15 98.5 26.0 258 24-308 103-376 (377)
271 KOG1064 RAVE (regulator of V-A 99.5 1.4E-12 3E-17 120.4 13.8 221 73-318 2183-2405(2439)
272 KOG1912 WD40 repeat protein [G 99.5 2.4E-11 5.1E-16 103.9 20.0 294 11-316 10-369 (1062)
273 COG2706 3-carboxymuconate cycl 99.4 7.4E-10 1.6E-14 86.9 26.0 229 79-315 15-278 (346)
274 KOG2314 Translation initiation 99.4 1.8E-10 3.9E-15 95.0 23.6 282 16-312 210-526 (698)
275 KOG2315 Predicted translation 99.4 8.2E-11 1.8E-15 96.9 21.7 257 21-291 130-410 (566)
276 COG4946 Uncharacterized protei 99.4 8.1E-10 1.8E-14 89.6 24.9 147 22-175 327-478 (668)
277 PRK04043 tolB translocation pr 99.4 2.3E-09 5E-14 90.8 27.8 216 36-271 169-402 (419)
278 PLN02919 haloacid dehalogenase 99.4 3.5E-09 7.5E-14 99.4 31.5 240 21-273 572-892 (1057)
279 KOG4532 WD40-like repeat conta 99.4 7E-10 1.5E-14 83.5 20.6 261 33-313 49-333 (344)
280 COG5354 Uncharacterized protei 99.4 8.9E-10 1.9E-14 90.0 22.8 251 34-303 150-421 (561)
281 PF04762 IKI3: IKI3 family; I 99.4 5.9E-09 1.3E-13 96.1 31.0 240 60-313 211-521 (928)
282 PF15492 Nbas_N: Neuroblastoma 99.4 8.1E-09 1.8E-13 78.8 26.3 232 64-318 3-266 (282)
283 KOG2041 WD40 repeat protein [G 99.4 4.6E-11 9.9E-16 101.4 15.5 230 58-302 14-279 (1189)
284 PRK04043 tolB translocation pr 99.3 1E-08 2.2E-13 87.0 29.4 221 81-314 170-403 (419)
285 KOG4714 Nucleoporin [Nuclear s 99.3 2.1E-11 4.5E-16 91.0 11.6 154 21-175 96-255 (319)
286 KOG4190 Uncharacterized conser 99.3 3.5E-11 7.6E-16 99.3 12.9 266 25-307 746-1032(1034)
287 KOG1409 Uncharacterized conser 99.3 6.8E-10 1.5E-14 86.4 18.5 249 51-315 17-274 (404)
288 KOG4190 Uncharacterized conser 99.3 1.4E-11 3.1E-16 101.5 9.6 207 93-312 728-949 (1034)
289 PF08450 SGL: SMP-30/Gluconola 99.3 4E-08 8.6E-13 77.9 28.9 217 63-299 4-243 (246)
290 KOG4532 WD40-like repeat conta 99.3 2.6E-09 5.7E-14 80.5 19.8 199 28-231 86-291 (344)
291 KOG2695 WD40 repeat protein [G 99.3 2.9E-11 6.3E-16 93.9 9.7 155 74-235 228-389 (425)
292 KOG1645 RING-finger-containing 99.3 4E-10 8.7E-15 89.4 16.1 248 53-312 188-462 (463)
293 KOG0882 Cyclophilin-related pe 99.3 5.5E-10 1.2E-14 89.9 17.0 286 10-308 4-369 (558)
294 PF15492 Nbas_N: Neuroblastoma 99.3 5.3E-08 1.2E-12 74.5 26.8 237 25-282 7-272 (282)
295 PRK11138 outer membrane biogen 99.3 2.7E-08 5.8E-13 84.6 27.9 276 24-316 67-358 (394)
296 KOG1832 HIV-1 Vpr-binding prot 99.3 5.3E-12 1.1E-16 109.4 5.3 221 52-298 1095-1318(1516)
297 KOG3914 WD repeat protein WDR4 99.2 2.6E-10 5.7E-15 90.3 13.5 161 61-232 65-233 (390)
298 KOG4714 Nucleoporin [Nuclear s 99.2 7.1E-10 1.5E-14 83.0 14.7 161 57-223 88-255 (319)
299 KOG3914 WD repeat protein WDR4 99.2 5E-10 1.1E-14 88.8 14.4 164 147-318 65-230 (390)
300 PF08450 SGL: SMP-30/Gluconola 99.2 2.9E-07 6.2E-12 73.0 30.3 215 21-250 4-242 (246)
301 PRK11138 outer membrane biogen 99.2 2.9E-08 6.2E-13 84.4 25.6 263 23-310 117-393 (394)
302 KOG1912 WD40 repeat protein [G 99.2 7.6E-09 1.6E-13 89.0 21.0 244 59-316 16-309 (1062)
303 PF13360 PQQ_2: PQQ-like domai 99.2 1.8E-07 3.9E-12 73.9 27.3 220 35-275 2-236 (238)
304 PF07433 DUF1513: Protein of u 99.1 5E-07 1.1E-11 71.3 26.9 218 22-245 10-269 (305)
305 PF13360 PQQ_2: PQQ-like domai 99.1 1.1E-07 2.5E-12 75.0 23.8 217 79-315 2-234 (238)
306 COG5170 CDC55 Serine/threonine 99.1 3E-09 6.4E-14 81.9 13.5 209 99-318 25-316 (460)
307 KOG0309 Conserved WD40 repeat- 99.1 8.2E-10 1.8E-14 94.3 11.1 208 100-317 24-238 (1081)
308 KOG2695 WD40 repeat protein [G 99.1 6E-10 1.3E-14 86.7 8.7 144 29-177 227-379 (425)
309 KOG3617 WD40 and TPR repeat-co 99.0 1.7E-08 3.6E-13 87.9 15.9 281 11-313 10-335 (1416)
310 PF00400 WD40: WD domain, G-be 99.0 8.5E-10 1.9E-14 59.8 4.9 38 272-309 2-39 (39)
311 KOG0882 Cyclophilin-related pe 99.0 3.2E-08 6.8E-13 80.1 15.5 245 57-315 8-309 (558)
312 KOG2114 Vacuolar assembly/sort 99.0 6.6E-07 1.4E-11 78.4 23.7 208 65-283 30-258 (933)
313 KOG2066 Vacuolar assembly/sort 99.0 6.4E-08 1.4E-12 83.8 16.9 183 58-269 39-233 (846)
314 KOG1275 PAB-dependent poly(A) 99.0 3.2E-08 7E-13 86.7 15.1 184 25-220 146-340 (1118)
315 PF00930 DPPIV_N: Dipeptidyl p 98.9 1.1E-05 2.3E-10 67.6 28.8 257 34-300 21-346 (353)
316 KOG2066 Vacuolar assembly/sort 98.9 6.9E-08 1.5E-12 83.6 15.1 186 15-223 38-234 (846)
317 KOG1275 PAB-dependent poly(A) 98.9 8.3E-08 1.8E-12 84.3 15.6 180 70-267 147-340 (1118)
318 cd00216 PQQ_DH Dehydrogenases 98.9 6.8E-06 1.5E-10 71.8 27.6 279 26-318 61-431 (488)
319 KOG1920 IkappaB kinase complex 98.9 1.5E-06 3.2E-11 79.0 23.3 204 58-271 68-324 (1265)
320 PF00400 WD40: WD domain, G-be 98.9 1.3E-08 2.8E-13 55.0 6.9 37 136-172 3-39 (39)
321 PRK02888 nitrous-oxide reducta 98.9 3.5E-06 7.6E-11 72.9 24.6 217 35-270 151-405 (635)
322 PF07433 DUF1513: Protein of u 98.9 3.9E-06 8.4E-11 66.4 22.9 211 102-318 6-254 (305)
323 PF06433 Me-amine-dh_H: Methyl 98.9 1.2E-05 2.7E-10 64.4 25.8 235 37-280 68-331 (342)
324 PF06977 SdiA-regulated: SdiA- 98.9 5.5E-06 1.2E-10 64.5 23.1 196 51-251 14-239 (248)
325 KOG1920 IkappaB kinase complex 98.9 4.7E-06 1E-10 75.9 25.0 206 100-312 68-323 (1265)
326 KOG4649 PQQ (pyrrolo-quinoline 98.8 1.7E-05 3.8E-10 60.2 27.4 140 27-173 24-164 (354)
327 KOG3621 WD40 repeat-containing 98.8 3.9E-06 8.6E-11 72.1 21.8 289 12-314 31-356 (726)
328 KOG2114 Vacuolar assembly/sort 98.8 5E-06 1.1E-10 73.1 22.8 204 18-231 27-252 (933)
329 cd00216 PQQ_DH Dehydrogenases 98.8 2.2E-05 4.8E-10 68.6 26.9 244 27-279 111-434 (488)
330 PF11768 DUF3312: Protein of u 98.8 5.8E-07 1.3E-11 75.7 16.1 99 38-140 238-338 (545)
331 PF14583 Pectate_lyase22: Olig 98.8 5.6E-05 1.2E-09 61.9 26.9 280 26-313 47-383 (386)
332 KOG1008 Uncharacterized conser 98.7 5.8E-09 1.3E-13 87.9 3.2 202 14-222 54-275 (783)
333 COG0823 TolB Periplasmic compo 98.7 4.6E-06 1E-10 70.6 20.4 186 57-251 191-387 (425)
334 KOG1645 RING-finger-containing 98.7 2.2E-06 4.7E-11 68.8 16.5 163 82-251 175-348 (463)
335 PRK02888 nitrous-oxide reducta 98.7 3.3E-05 7.1E-10 67.1 24.6 223 69-312 140-405 (635)
336 PF08596 Lgl_C: Lethal giant l 98.7 2.8E-05 6E-10 65.3 23.4 245 60-311 3-335 (395)
337 PF00780 CNH: CNH domain; Int 98.7 0.00012 2.5E-09 59.3 26.6 233 22-281 3-267 (275)
338 KOG1008 Uncharacterized conser 98.6 1.4E-08 3.1E-13 85.6 2.5 202 101-312 57-276 (783)
339 PF04053 Coatomer_WDAD: Coatom 98.6 7E-05 1.5E-09 63.8 24.3 220 57-312 31-263 (443)
340 COG3391 Uncharacterized conser 98.6 0.00021 4.6E-09 60.4 30.2 265 38-316 13-288 (381)
341 PF00780 CNH: CNH domain; Int 98.6 9.6E-05 2.1E-09 59.7 24.3 227 68-320 5-264 (275)
342 KOG1832 HIV-1 Vpr-binding prot 98.6 4.8E-08 1E-12 85.6 5.2 198 91-316 1092-1296(1516)
343 PF03178 CPSF_A: CPSF A subuni 98.6 0.00012 2.7E-09 60.5 25.0 220 36-266 2-262 (321)
344 PF06433 Me-amine-dh_H: Methyl 98.6 0.00017 3.7E-09 58.1 26.9 268 36-318 17-327 (342)
345 PF11768 DUF3312: Protein of u 98.5 0.00044 9.5E-09 59.0 26.9 119 192-318 208-336 (545)
346 COG3391 Uncharacterized conser 98.5 0.00044 9.6E-09 58.5 28.1 225 59-292 74-309 (381)
347 PF06977 SdiA-regulated: SdiA- 98.5 0.00025 5.5E-09 55.4 23.9 203 95-308 16-247 (248)
348 PF04053 Coatomer_WDAD: Coatom 98.5 0.0002 4.4E-09 61.1 23.6 223 15-269 31-262 (443)
349 PF08553 VID27: VID27 cytoplas 98.5 3.2E-05 6.9E-10 69.6 19.5 144 70-221 493-646 (794)
350 KOG3617 WD40 and TPR repeat-co 98.5 2.9E-06 6.3E-11 74.5 12.4 114 58-175 15-132 (1416)
351 PF04841 Vps16_N: Vps16, N-ter 98.5 0.00067 1.4E-08 57.9 25.9 197 81-295 62-273 (410)
352 KOG3621 WD40 repeat-containing 98.5 4.2E-06 9.1E-11 72.0 12.4 148 57-207 32-186 (726)
353 COG0823 TolB Periplasmic compo 98.4 4E-05 8.7E-10 65.0 18.1 163 36-209 218-389 (425)
354 PF02897 Peptidase_S9_N: Proly 98.4 0.001 2.2E-08 57.2 29.1 248 62-315 127-408 (414)
355 COG3204 Uncharacterized protei 98.4 0.00045 9.8E-09 53.9 20.4 191 36-230 63-270 (316)
356 PF04841 Vps16_N: Vps16, N-ter 98.4 0.0013 2.8E-08 56.2 27.9 193 37-247 62-273 (410)
357 PF00930 DPPIV_N: Dipeptidyl p 98.3 0.00083 1.8E-08 56.4 23.2 232 16-251 42-345 (353)
358 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.3 0.0024 5.2E-08 56.4 30.2 285 26-319 69-498 (527)
359 KOG4640 Anaphase-promoting com 98.2 8.9E-06 1.9E-10 69.2 8.9 95 58-154 20-115 (665)
360 PF08596 Lgl_C: Lethal giant l 98.2 0.0013 2.7E-08 55.5 21.5 211 102-317 3-296 (395)
361 PF03178 CPSF_A: CPSF A subuni 98.2 0.0016 3.5E-08 53.9 21.2 132 36-174 62-202 (321)
362 PF14783 BBS2_Mid: Ciliary BBS 98.1 0.0006 1.3E-08 45.3 14.4 100 61-169 2-109 (111)
363 PF08553 VID27: VID27 cytoplas 98.1 0.0012 2.5E-08 60.0 19.8 133 34-173 502-646 (794)
364 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.1 0.0071 1.5E-07 53.5 29.3 251 22-280 116-501 (527)
365 smart00320 WD40 WD40 repeats. 98.0 1.4E-05 3.1E-10 42.3 4.6 38 272-309 3-40 (40)
366 KOG2395 Protein involved in va 98.0 0.00028 6E-09 59.4 13.2 144 69-222 344-500 (644)
367 PRK13616 lipoprotein LpqB; Pro 98.0 0.0063 1.4E-07 54.3 22.4 204 79-305 328-562 (591)
368 COG3386 Gluconolactonase [Carb 98.0 0.0052 1.1E-07 49.9 20.1 200 107-318 31-249 (307)
369 PRK13616 lipoprotein LpqB; Pro 98.0 0.0036 7.8E-08 55.8 20.6 195 35-243 328-550 (591)
370 KOG2395 Protein involved in va 97.9 0.00083 1.8E-08 56.6 14.8 135 33-174 353-500 (644)
371 COG3386 Gluconolactonase [Carb 97.9 0.0087 1.9E-07 48.7 22.6 199 34-243 45-264 (307)
372 KOG4640 Anaphase-promoting com 97.9 0.00011 2.4E-09 62.8 9.5 93 144-243 20-115 (665)
373 PHA02713 hypothetical protein; 97.8 0.0024 5.3E-08 56.9 17.8 179 37-226 321-537 (557)
374 PF14783 BBS2_Mid: Ciliary BBS 97.8 0.0035 7.5E-08 41.7 13.7 102 103-217 2-109 (111)
375 smart00320 WD40 WD40 repeats. 97.8 0.0001 2.2E-09 38.8 5.7 36 137-172 5-40 (40)
376 COG3490 Uncharacterized protei 97.8 0.011 2.5E-07 46.1 22.4 214 90-310 58-347 (366)
377 KOG4441 Proteins containing BT 97.8 0.0091 2E-07 53.3 19.6 181 36-229 301-506 (571)
378 KOG4649 PQQ (pyrrolo-quinoline 97.7 0.014 3E-07 45.1 23.9 145 70-224 23-167 (354)
379 COG3490 Uncharacterized protei 97.7 0.015 3.3E-07 45.5 17.8 218 36-268 91-347 (366)
380 KOG1897 Damage-specific DNA bi 97.7 0.041 9E-07 50.5 29.8 292 9-314 578-901 (1096)
381 PF02897 Peptidase_S9_N: Proly 97.7 0.031 6.6E-07 48.2 27.8 245 21-274 128-409 (414)
382 KOG2444 WD40 repeat protein [G 97.6 0.00017 3.7E-09 54.0 6.0 142 29-175 33-178 (238)
383 PF14870 PSII_BNR: Photosynthe 97.6 0.026 5.6E-07 45.7 26.1 233 16-266 61-301 (302)
384 PF14583 Pectate_lyase22: Olig 97.6 0.03 6.4E-07 46.5 23.9 231 62-302 39-303 (386)
385 KOG1897 Damage-specific DNA bi 97.6 0.066 1.4E-06 49.2 30.1 306 16-330 489-875 (1096)
386 KOG4441 Proteins containing BT 97.5 0.031 6.8E-07 50.0 20.0 235 68-314 283-549 (571)
387 PHA03098 kelch-like protein; P 97.5 0.037 8.1E-07 49.5 20.1 179 37-226 312-515 (534)
388 PHA02713 hypothetical protein; 97.5 0.03 6.6E-07 50.1 19.1 224 37-280 273-544 (557)
389 PF07995 GSDH: Glucose / Sorbo 97.5 0.048 1E-06 45.3 23.5 242 60-306 3-330 (331)
390 PF10647 Gmad1: Lipoprotein Lp 97.4 0.042 9.1E-07 43.7 23.1 153 60-218 25-192 (253)
391 PF05694 SBP56: 56kDa selenium 97.4 0.062 1.3E-06 45.2 18.4 174 36-209 157-393 (461)
392 PF05694 SBP56: 56kDa selenium 97.4 0.064 1.4E-06 45.1 22.7 252 37-300 38-392 (461)
393 PF12894 Apc4_WD40: Anaphase-p 97.4 0.00088 1.9E-08 37.1 5.3 34 58-92 11-44 (47)
394 KOG3630 Nuclear pore complex, 97.4 0.006 1.3E-07 56.4 13.1 148 59-208 101-262 (1405)
395 KOG2444 WD40 repeat protein [G 97.3 0.0008 1.7E-08 50.5 6.3 103 27-132 71-178 (238)
396 KOG2079 Vacuolar assembly/sort 97.3 0.0017 3.6E-08 59.5 8.9 108 62-173 91-202 (1206)
397 PF12894 Apc4_WD40: Anaphase-p 97.2 0.0017 3.7E-08 36.0 5.4 32 281-312 11-42 (47)
398 KOG4499 Ca2+-binding protein R 97.2 0.063 1.4E-06 40.9 19.9 135 145-292 109-264 (310)
399 KOG2079 Vacuolar assembly/sort 97.2 0.019 4.2E-07 53.0 14.1 102 112-221 98-202 (1206)
400 KOG3630 Nuclear pore complex, 97.1 0.013 2.8E-07 54.4 12.7 146 145-299 101-261 (1405)
401 PF14761 HPS3_N: Hermansky-Pud 97.1 0.07 1.5E-06 40.3 15.9 147 21-173 22-213 (215)
402 PF15390 DUF4613: Domain of un 97.0 0.2 4.3E-06 43.7 17.8 153 59-223 20-187 (671)
403 KOG1916 Nuclear protein, conta 97.0 0.0025 5.3E-08 57.4 7.0 158 36-227 153-328 (1283)
404 COG3204 Uncharacterized protei 97.0 0.12 2.7E-06 40.9 19.4 161 13-175 82-264 (316)
405 PF14655 RAB3GAP2_N: Rab3 GTPa 96.9 0.22 4.8E-06 42.3 24.2 51 59-110 57-118 (415)
406 PF05096 Glu_cyclase_2: Glutam 96.9 0.15 3.2E-06 40.2 21.0 186 16-208 44-249 (264)
407 KOG2280 Vacuolar assembly/sort 96.8 0.33 7.2E-06 43.6 18.5 199 80-293 64-271 (829)
408 COG5276 Uncharacterized conser 96.8 0.19 4.1E-06 39.8 23.8 198 99-316 85-290 (370)
409 PF10168 Nup88: Nuclear pore c 96.7 0.11 2.3E-06 47.7 15.3 28 59-87 85-112 (717)
410 TIGR03118 PEPCTERM_chp_1 conse 96.7 0.23 5.1E-06 39.7 23.4 227 60-291 24-307 (336)
411 PF14727 PHTB1_N: PTHB1 N-term 96.7 0.35 7.5E-06 41.3 29.4 273 27-317 38-366 (418)
412 COG5167 VID27 Protein involved 96.6 0.064 1.4E-06 45.7 12.1 144 69-222 478-632 (776)
413 PRK10115 protease 2; Provision 96.6 0.59 1.3E-05 43.2 29.3 241 60-313 128-396 (686)
414 PF12234 Rav1p_C: RAVE protein 96.6 0.17 3.7E-06 45.2 15.3 116 101-222 30-156 (631)
415 PF15390 DUF4613: Domain of un 96.6 0.18 3.8E-06 44.0 14.6 114 59-173 57-185 (671)
416 COG5276 Uncharacterized conser 96.6 0.27 5.8E-06 39.1 27.2 156 21-183 91-250 (370)
417 PF12234 Rav1p_C: RAVE protein 96.4 0.44 9.6E-06 42.8 16.6 114 58-173 29-155 (631)
418 PF05096 Glu_cyclase_2: Glutam 96.4 0.34 7.3E-06 38.2 23.7 180 103-300 47-249 (264)
419 KOG2377 Uncharacterized conser 96.3 0.11 2.4E-06 43.7 11.5 138 22-163 28-172 (657)
420 TIGR03074 PQQ_membr_DH membran 96.3 0.92 2E-05 42.3 24.0 204 69-277 193-485 (764)
421 PF10647 Gmad1: Lipoprotein Lp 96.3 0.41 8.9E-06 38.1 22.3 144 102-251 25-183 (253)
422 PHA03098 kelch-like protein; P 96.3 0.42 9.1E-06 42.9 16.5 133 37-175 359-512 (534)
423 KOG4499 Ca2+-binding protein R 96.3 0.15 3.2E-06 39.0 11.2 102 19-120 160-273 (310)
424 PF14655 RAB3GAP2_N: Rab3 GTPa 96.3 0.61 1.3E-05 39.8 24.5 90 63-154 6-118 (415)
425 TIGR02604 Piru_Ver_Nterm putat 96.3 0.59 1.3E-05 39.6 22.2 142 59-208 14-201 (367)
426 PHA02790 Kelch-like protein; P 96.3 0.74 1.6E-05 40.6 18.8 173 37-224 288-472 (480)
427 PF14761 HPS3_N: Hermansky-Pud 96.2 0.35 7.7E-06 36.7 13.3 107 114-224 29-165 (215)
428 TIGR03074 PQQ_membr_DH membran 96.2 1 2.2E-05 42.0 23.5 113 26-139 194-352 (764)
429 PF08728 CRT10: CRT10; InterP 96.2 0.54 1.2E-05 42.7 16.1 108 112-221 113-245 (717)
430 TIGR02604 Piru_Ver_Nterm putat 96.2 0.59 1.3E-05 39.6 15.9 147 101-251 14-201 (367)
431 PHA02790 Kelch-like protein; P 96.1 0.78 1.7E-05 40.5 16.7 183 112-313 271-472 (480)
432 TIGR03118 PEPCTERM_chp_1 conse 96.1 0.57 1.2E-05 37.6 22.1 208 101-318 23-286 (336)
433 PF10313 DUF2415: Uncharacteri 96.1 0.039 8.4E-07 29.7 5.3 32 101-132 1-34 (43)
434 KOG1983 Tomosyn and related SN 96.0 0.79 1.7E-05 44.1 16.9 33 59-91 36-68 (993)
435 PRK13684 Ycf48-like protein; P 95.9 0.83 1.8E-05 38.1 27.6 150 144-310 172-330 (334)
436 PF10168 Nup88: Nuclear pore c 95.8 0.64 1.4E-05 42.9 15.2 35 281-315 146-183 (717)
437 TIGR02276 beta_rpt_yvtn 40-res 95.7 0.082 1.8E-06 28.4 6.1 41 199-241 1-41 (42)
438 PF10313 DUF2415: Uncharacteri 95.7 0.075 1.6E-06 28.6 5.3 31 145-175 1-34 (43)
439 smart00036 CNH Domain found in 95.6 1 2.2E-05 37.0 27.1 231 29-279 15-280 (302)
440 KOG2247 WD40 repeat-containing 95.6 0.0016 3.5E-08 54.5 -1.6 142 146-302 36-179 (615)
441 PRK13684 Ycf48-like protein; P 95.6 1.1 2.4E-05 37.4 25.7 152 100-267 172-329 (334)
442 PF14870 PSII_BNR: Photosynthe 95.6 1 2.2E-05 36.8 30.8 269 15-308 15-301 (302)
443 KOG2377 Uncharacterized conser 95.6 0.5 1.1E-05 40.0 12.3 127 162-299 39-171 (657)
444 PF14727 PHTB1_N: PTHB1 N-term 95.5 1.4 3.1E-05 37.7 26.0 145 69-221 36-203 (418)
445 PRK10115 protease 2; Provision 95.5 2.2 4.7E-05 39.7 31.7 241 17-272 127-397 (686)
446 KOG2247 WD40 repeat-containing 95.4 0.0016 3.5E-08 54.5 -2.3 239 60-318 36-287 (615)
447 PF07569 Hira: TUP1-like enhan 95.2 0.24 5.3E-06 38.3 9.0 62 112-174 21-95 (219)
448 PF07569 Hira: TUP1-like enhan 95.1 0.27 5.8E-06 38.1 8.9 76 16-92 12-99 (219)
449 PF10433 MMS1_N: Mono-function 95.0 2.5 5.5E-05 37.6 23.6 248 27-291 223-503 (504)
450 KOG2280 Vacuolar assembly/sort 94.9 3 6.4E-05 38.0 18.0 156 18-175 85-247 (829)
451 COG5167 VID27 Protein involved 94.8 1.1 2.3E-05 38.7 12.1 134 34-174 488-632 (776)
452 COG4590 ABC-type uncharacteriz 94.7 0.2 4.2E-06 42.3 7.6 167 98-276 218-393 (733)
453 KOG1916 Nuclear protein, conta 94.5 0.091 2E-06 48.0 5.8 117 79-201 110-236 (1283)
454 PF11715 Nup160: Nucleoporin N 94.5 0.57 1.2E-05 42.2 10.9 72 25-96 157-256 (547)
455 PF14781 BBS2_N: Ciliary BBSom 94.4 1.1 2.5E-05 31.2 12.7 88 150-241 4-100 (136)
456 PF12768 Rax2: Cortical protei 94.3 1.8 3.8E-05 35.0 12.1 114 80-199 16-146 (281)
457 TIGR03548 mutarot_permut cycli 94.2 2.8 6E-05 34.9 14.3 99 21-122 118-233 (323)
458 COG3292 Predicted periplasmic 94.2 3.7 8.1E-05 36.2 17.9 274 12-307 160-443 (671)
459 PF08728 CRT10: CRT10; InterP 94.1 4.7 0.0001 37.0 17.3 146 156-310 49-245 (717)
460 PF12657 TFIIIC_delta: Transcr 93.8 1.2 2.7E-05 33.0 9.8 30 145-174 86-121 (173)
461 KOG1898 Splicing factor 3b, su 93.7 6.5 0.00014 37.4 24.9 87 10-96 533-626 (1205)
462 PF02333 Phytase: Phytase; In 93.7 3.8 8.3E-05 34.6 20.6 189 112-314 67-293 (381)
463 PF12657 TFIIIC_delta: Transcr 93.1 1 2.2E-05 33.4 8.4 31 101-131 86-121 (173)
464 TIGR02276 beta_rpt_yvtn 40-res 93.0 0.69 1.5E-05 24.6 5.7 31 68-98 1-32 (42)
465 KOG1900 Nuclear pore complex, 93.0 1.1 2.3E-05 43.2 9.9 163 120-314 96-275 (1311)
466 KOG4460 Nuclear pore complex, 93.0 4.7 0.0001 35.2 12.7 135 150-315 56-202 (741)
467 smart00036 CNH Domain found in 92.9 4.6 9.9E-05 33.2 23.4 231 69-317 12-276 (302)
468 COG3823 Glutamine cyclotransfe 92.9 3.3 7.1E-05 31.4 13.1 168 112-299 55-247 (262)
469 PF14781 BBS2_N: Ciliary BBSom 92.8 2.3 5.1E-05 29.7 13.7 115 106-229 4-132 (136)
470 KOG1900 Nuclear pore complex, 92.8 4.5 9.7E-05 39.4 13.5 142 29-176 92-274 (1311)
471 PF10395 Utp8: Utp8 family; I 92.7 7.8 0.00017 35.3 23.2 236 28-278 41-314 (670)
472 KOG2063 Vacuolar assembly/sort 92.6 9.6 0.00021 36.1 18.3 72 20-92 20-100 (877)
473 PF10433 MMS1_N: Mono-function 92.6 7.4 0.00016 34.8 24.8 232 67-315 219-480 (504)
474 PF12768 Rax2: Cortical protei 92.5 4.3 9.2E-05 32.9 11.6 93 35-129 15-121 (281)
475 PF07676 PD40: WD40-like Beta 92.4 0.68 1.5E-05 24.2 5.0 30 188-219 7-38 (39)
476 PLN02193 nitrile-specifier pro 92.4 7.5 0.00016 34.4 20.1 136 37-176 194-353 (470)
477 PF07995 GSDH: Glucose / Sorbo 92.3 5.9 0.00013 33.1 15.7 105 102-209 3-133 (331)
478 PF11715 Nup160: Nucleoporin N 92.3 1.2 2.5E-05 40.2 9.2 75 154-231 156-257 (547)
479 PF10214 Rrn6: RNA polymerase 92.3 10 0.00023 35.9 26.7 114 145-270 146-277 (765)
480 PLN02153 epithiospecifier prot 92.0 6.7 0.00014 32.9 23.6 94 37-134 51-170 (341)
481 KOG1896 mRNA cleavage and poly 91.9 13 0.00029 36.1 16.6 179 35-222 1003-1213(1366)
482 TIGR03548 mutarot_permut cycli 91.6 7 0.00015 32.5 19.1 104 69-175 72-195 (323)
483 PLN00033 photosystem II stabil 91.5 8.3 0.00018 33.1 30.4 145 147-308 241-396 (398)
484 COG4590 ABC-type uncharacteriz 91.3 8.7 0.00019 33.0 14.7 160 145-317 221-392 (733)
485 PF03088 Str_synth: Strictosid 91.2 2.8 6E-05 27.1 8.9 41 211-251 34-74 (89)
486 PF08801 Nucleoporin_N: Nup133 91.0 8.4 0.00018 33.5 12.8 31 145-175 190-220 (422)
487 PLN00033 photosystem II stabil 90.9 9.7 0.00021 32.7 26.4 144 106-266 244-396 (398)
488 COG3823 Glutamine cyclotransfe 90.8 5.9 0.00013 30.1 15.1 181 19-208 48-247 (262)
489 TIGR03547 muta_rot_YjhT mutatr 90.7 9.1 0.0002 32.2 22.7 94 25-122 16-128 (346)
490 KOG3522 Predicted guanine nucl 90.7 5.8 0.00012 36.7 11.3 146 71-230 548-705 (925)
491 PRK14131 N-acetylneuraminic ac 90.5 10 0.00022 32.3 21.5 95 26-122 38-149 (376)
492 COG1520 FOG: WD40-like repeat 90.3 11 0.00023 32.2 28.4 203 23-233 65-279 (370)
493 PF02333 Phytase: Phytase; In 89.6 12 0.00026 31.8 21.7 195 27-230 69-299 (381)
494 COG4880 Secreted protein conta 89.6 12 0.00026 31.9 14.7 176 81-276 407-599 (603)
495 PF11635 Med16: Mediator compl 89.3 20 0.00043 34.0 24.1 187 114-306 63-345 (753)
496 COG1520 FOG: WD40-like repeat 89.1 13 0.00028 31.6 27.2 203 69-280 68-279 (370)
497 PF11635 Med16: Mediator compl 89.1 21 0.00045 33.8 19.0 188 27-217 63-345 (753)
498 PF10214 Rrn6: RNA polymerase 88.9 21 0.00046 33.9 26.2 161 57-223 78-277 (765)
499 PF07676 PD40: WD40-like Beta 88.3 2.4 5.2E-05 22.1 5.1 29 57-85 7-38 (39)
500 PF10395 Utp8: Utp8 family; I 88.2 21 0.00045 32.8 24.3 167 58-231 129-314 (670)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.6e-52 Score=320.27 Aligned_cols=310 Identities=20% Similarity=0.377 Sum_probs=269.8
Q ss_pred ccCCCCcccccceeeeecCC--ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEE
Q 019847 8 LDAPYLMEDYYSKVIDWGRN--NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLW 85 (335)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 85 (335)
.......+...+.|+.|+|+ .+++++.|.++++||+.+... .++..+|...|.|++|+|||+.||+|+.||+|++|
T Consensus 107 CssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp--~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lw 184 (480)
T KOG0271|consen 107 CSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETP--LFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLW 184 (480)
T ss_pred eccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCc--ceeecCCccEEEEEEECCCcchhhccccCCeEEEe
Confidence 33445567888999999994 688888999999999998864 66778999999999999999999999999999999
Q ss_pred eCCCceeE-eeecccccceeEeeecCC----CCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEE
Q 019847 86 DAETSKLV-RNLEGHHRRVATSSWNHW----NGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLA 160 (335)
Q Consensus 86 ~~~~~~~~-~~~~~~~~~v~~~~~~~~----~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 160 (335)
|.++|+++ +.+.+|...|++++|.|. ..++|++++.||.++|||+..+. ....+.+|..+|+|++|--+ .+++
T Consensus 185 dpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~-~~~~lsgHT~~VTCvrwGG~-gliy 262 (480)
T KOG0271|consen 185 DPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT-CVRTLSGHTASVTCVRWGGE-GLIY 262 (480)
T ss_pred cCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCce-EEEEeccCccceEEEEEcCC-ceEE
Confidence 99988765 568999999999999762 56799999999999999998544 57778999999999999765 4899
Q ss_pred EEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEec-----------CCCC------------------------cEE
Q 019847 161 SGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWS-----------PHQV------------------------NVL 205 (335)
Q Consensus 161 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~-----------~~~~------------------------~~~ 205 (335)
+|+.|++|++|+... +...+.+.+|...|+.++.+ |.+. ..+
T Consensus 263 SgS~DrtIkvw~a~d---G~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erl 339 (480)
T KOG0271|consen 263 SGSQDRTIKVWRALD---GKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERL 339 (480)
T ss_pred ecCCCceEEEEEccc---hhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCccee
Confidence 999999999999665 56788889999999999887 2222 246
Q ss_pred EEecCCCCCeEEEEECCCC-ceEEEeec-CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCc
Q 019847 206 ATGGGREDGCIKIWNVQKG-TCIHGIDA-KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSR 283 (335)
Q Consensus 206 ~~~~g~~d~~i~i~d~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~ 283 (335)
++++ .|.++.+|+.... +++..... ...++.+.|+|++++++++ +-|..|++||.++|+.+.++++|-+.
T Consensus 340 VSgs--Dd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASa------SFDkSVkLW~g~tGk~lasfRGHv~~ 411 (480)
T KOG0271|consen 340 VSGS--DDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASA------SFDKSVKLWDGRTGKFLASFRGHVAA 411 (480)
T ss_pred EEec--CCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEe------ecccceeeeeCCCcchhhhhhhccce
Confidence 6666 9999999997544 35555554 4579999999999999988 66999999999999999999999999
Q ss_pred eeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCccccccccccceec
Q 019847 284 ILDLSQSPDGLTVATAGADETIRFWEAFGPSGDEDSVSHLAGLVSLKTS 332 (335)
Q Consensus 284 i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~i~~~~~~ 332 (335)
|..++|+.|.++|++|+.|.++++|++...+....+.+|.+.|..+.++
T Consensus 412 VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDws 460 (480)
T KOG0271|consen 412 VYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWS 460 (480)
T ss_pred eEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEec
Confidence 9999999999999999999999999999999999999999999988775
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=9.8e-50 Score=309.49 Aligned_cols=282 Identities=20% Similarity=0.389 Sum_probs=255.6
Q ss_pred CCcccccceeeeecCC--ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCC--CCEEEEEECCCcEEEEeC
Q 019847 12 YLMEDYYSKVIDWGRN--NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHD--AKTLAVGYMDSKLQLWDA 87 (335)
Q Consensus 12 ~~~~~~~~~~~~~~~~--~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iw~~ 87 (335)
.+.++.++..+.|+.+ .+++++.+|.++||+..+... ...+.+|...|.++.|+|. +..+|+|+.||++++|++
T Consensus 171 Q~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~--~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~ 248 (459)
T KOG0272|consen 171 QVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNL--LQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKL 248 (459)
T ss_pred hccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcce--eEEEeccccceeeEEEccCCCccceeeeccCCceeeecc
Confidence 4456677777888874 677888999999999988854 5567799999999999996 678999999999999999
Q ss_pred CCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCe
Q 019847 88 ETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNV 167 (335)
Q Consensus 88 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 167 (335)
++..++..+.+|...|..++|+| +|++|++++.|.+-++||+++...+. ...+|...|.+++|+|||.++++|+.|..
T Consensus 249 ~~e~~l~~l~gH~~RVs~VafHP-sG~~L~TasfD~tWRlWD~~tk~ElL-~QEGHs~~v~~iaf~~DGSL~~tGGlD~~ 326 (459)
T KOG0272|consen 249 SQETPLQDLEGHLARVSRVAFHP-SGKFLGTASFDSTWRLWDLETKSELL-LQEGHSKGVFSIAFQPDGSLAATGGLDSL 326 (459)
T ss_pred CCCcchhhhhcchhhheeeeecC-CCceeeecccccchhhcccccchhhH-hhcccccccceeEecCCCceeeccCccch
Confidence 99999999999999999999999 99999999999999999999877644 46799999999999999999999999999
Q ss_pred EEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCC-cEeEEEeCC-CC
Q 019847 168 VRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKA-QICGLEWNR-HH 245 (335)
Q Consensus 168 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~-~~ 245 (335)
-+|||++++ ..+..+.+|..+|.++.|+|+| +.+++|+ .|++++|||++..+++..+..+. -|+.+.|+| .|
T Consensus 327 ~RvWDlRtg---r~im~L~gH~k~I~~V~fsPNG-y~lATgs--~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g 400 (459)
T KOG0272|consen 327 GRVWDLRTG---RCIMFLAGHIKEILSVAFSPNG-YHLATGS--SDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEG 400 (459)
T ss_pred hheeecccC---cEEEEecccccceeeEeECCCc-eEEeecC--CCCcEEEeeecccccceecccccchhhheEecccCC
Confidence 999999985 5588889999999999999999 6778876 89999999999999998888764 688999999 66
Q ss_pred ceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEe
Q 019847 246 KEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWE 309 (335)
Q Consensus 246 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~ 309 (335)
.+++++ +-|+++++|..++..+++++.+|.+.|.++.+++|++++++++.|.++++|.
T Consensus 401 ~fL~Ta------syD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 401 YFLVTA------SYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred eEEEEc------ccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 777766 6799999999999999999999999999999999999999999999999995
No 3
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-48 Score=317.23 Aligned_cols=304 Identities=48% Similarity=0.877 Sum_probs=283.3
Q ss_pred cccccccCCCCcccccceeeeecCCceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcE
Q 019847 3 REARILDAPYLMEDYYSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKL 82 (335)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 82 (335)
.|++++++|.+.+|++.+-++|+...+++++.+..|++|+..+++...+..+. ...|+++.|+++|.+|++|..+|.|
T Consensus 164 ~p~rvLDaP~l~dDfY~nlldWss~n~laValg~~vylW~~~s~~v~~l~~~~--~~~vtSv~ws~~G~~LavG~~~g~v 241 (484)
T KOG0305|consen 164 TPYRVLDAPGLQDDFYLNLLDWSSANVLAVALGQSVYLWSASSGSVTELCSFG--EELVTSVKWSPDGSHLAVGTSDGTV 241 (484)
T ss_pred ChhhhccCCcccccHhhhHhhcccCCeEEEEecceEEEEecCCCceEEeEecC--CCceEEEEECCCCCEEEEeecCCeE
Confidence 57899999999999999999999999999999999999999999987776654 7889999999999999999999999
Q ss_pred EEEeCCCceeEeeecc-cccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEE
Q 019847 83 QLWDAETSKLVRNLEG-HHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLAS 161 (335)
Q Consensus 83 ~iw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 161 (335)
.|||..+.+.+..+.. |...|.+++| +...+.+|+.++.|..+|++..+.....+.+|...|..+.|++|++++|+
T Consensus 242 ~iwD~~~~k~~~~~~~~h~~rvg~laW---~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lAS 318 (484)
T KOG0305|consen 242 QIWDVKEQKKTRTLRGSHASRVGSLAW---NSSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLAS 318 (484)
T ss_pred EEEehhhccccccccCCcCceeEEEec---cCceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeecc
Confidence 9999999999999998 9999999999 57899999999999999999888766678899999999999999999999
Q ss_pred EeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEe
Q 019847 162 GGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEW 241 (335)
Q Consensus 162 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 241 (335)
|+.|+.+.|||... ..+...+..|...|.+++|+|-...++|+|+|+.|+.|++||..+++.+..+.....|+++.|
T Consensus 319 GgnDN~~~Iwd~~~---~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~W 395 (484)
T KOG0305|consen 319 GGNDNVVFIWDGLS---PEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIW 395 (484)
T ss_pred CCCccceEeccCCC---ccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEE
Confidence 99999999999744 456778888999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCC
Q 019847 242 NRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDED 318 (335)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~ 318 (335)
++..+.++++.+ ..++.|.||++.+.+++..+.+|..+|..++++|||..+++|+.|.++++|++.+......
T Consensus 396 sk~~kEi~sthG----~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~~~~~~ 468 (484)
T KOG0305|consen 396 SKKYKELLSTHG----YSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDERPKST 468 (484)
T ss_pred cCCCCEEEEecC----CCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCCCCccc
Confidence 999999998865 4588999999999999999999999999999999999999999999999999998644443
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7e-49 Score=301.42 Aligned_cols=274 Identities=23% Similarity=0.426 Sum_probs=243.0
Q ss_pred EeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecc
Q 019847 52 LQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVR 131 (335)
Q Consensus 52 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~ 131 (335)
..+.+|.++|.|++|+|+|..|++|+.|.++++||+.+..+....++|...|.|++|+| +++.|++|+.||+|++||..
T Consensus 109 sS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsP-Dgk~iASG~~dg~I~lwdpk 187 (480)
T KOG0271|consen 109 SSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSP-DGKKIASGSKDGSIRLWDPK 187 (480)
T ss_pred cccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECC-CcchhhccccCCeEEEecCC
Confidence 45679999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred cCCeeeEEeecCCCCEEEEEeec-----CCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEE
Q 019847 132 VSNNVTSCIKAHSGEVCGLKWSN-----EGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLA 206 (335)
Q Consensus 132 ~~~~~~~~~~~~~~~i~~~~~~~-----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 206 (335)
+++++...+.+|...|++++|.| ..++||+++.||.++|||+.. ...+..+.+|..+|+|+.|--+| ++.
T Consensus 188 tg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~---~~~~~~lsgHT~~VTCvrwGG~g--liy 262 (480)
T KOG0271|consen 188 TGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKL---GTCVRTLSGHTASVTCVRWGGEG--LIY 262 (480)
T ss_pred CCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccC---ceEEEEeccCccceEEEEEcCCc--eEE
Confidence 99999999999999999999976 568999999999999999775 56688889999999999997665 888
Q ss_pred EecCCCCCeEEEEECCCCceEEEeecCC-cEeEEEeC-----------CCCceee-------------------eeeeee
Q 019847 207 TGGGREDGCIKIWNVQKGTCIHGIDAKA-QICGLEWN-----------RHHKEIL-------------------SGHGFS 255 (335)
Q Consensus 207 ~~~g~~d~~i~i~d~~~~~~~~~~~~~~-~~~~~~~~-----------~~~~~~~-------------------~~~~~~ 255 (335)
+++ .|++|++|+...|.+.+.++.+. .|+.++.+ |.++..- .+..+.
T Consensus 263 SgS--~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlV 340 (480)
T KOG0271|consen 263 SGS--QDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLV 340 (480)
T ss_pred ecC--CCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeE
Confidence 877 99999999999999998888764 56666655 3343310 011244
Q ss_pred eecCCCeEEEEECCC-CceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCccccccccccceecc
Q 019847 256 ASGDGNKLCLWKYPN-MTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDEDSVSHLAGLVSLKTSV 333 (335)
Q Consensus 256 ~~~~~~~i~i~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~i~~~~~~~ 333 (335)
++++|.++.+|+... .+++..+.+|..-|+.+.||||++++|+++-|..|++|+..+++....+.+|.+.|..++++.
T Consensus 341 SgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsa 419 (480)
T KOG0271|consen 341 SGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSA 419 (480)
T ss_pred EecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEecc
Confidence 558999999999755 458889999999999999999999999999999999999999999999999999999888763
No 5
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.7e-46 Score=278.66 Aligned_cols=278 Identities=21% Similarity=0.422 Sum_probs=250.3
Q ss_pred ccccceeeeecCC--ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCc--
Q 019847 15 EDYYSKVIDWGRN--NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETS-- 90 (335)
Q Consensus 15 ~~~~~~~~~~~~~--~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-- 90 (335)
+...+.+++|+++ ++++++.||.+.|||.-+......+++ ....|..++|+|.|+++|+|+.|+...||++.+.
T Consensus 54 H~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl--~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~ 131 (343)
T KOG0286|consen 54 HLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPL--PSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDA 131 (343)
T ss_pred cccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEec--CceeEEEEEECCCCCeEEecCcCceeEEEecccccc
Confidence 3456788999985 688899999999999887776565555 4788999999999999999999999999999865
Q ss_pred ----eeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeec-CCCEEEEEeCC
Q 019847 91 ----KLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSN-EGNLLASGGDD 165 (335)
Q Consensus 91 ----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d 165 (335)
+..+++.+|.+-+.++.|.+ ...|++++.|.++.+||++++++ ...+.+|.+.|.+++++| +++.+++|+-|
T Consensus 132 ~g~~~v~r~l~gHtgylScC~f~d--D~~ilT~SGD~TCalWDie~g~~-~~~f~GH~gDV~slsl~p~~~ntFvSg~cD 208 (343)
T KOG0286|consen 132 EGNVRVSRELAGHTGYLSCCRFLD--DNHILTGSGDMTCALWDIETGQQ-TQVFHGHTGDVMSLSLSPSDGNTFVSGGCD 208 (343)
T ss_pred cccceeeeeecCccceeEEEEEcC--CCceEecCCCceEEEEEcccceE-EEEecCCcccEEEEecCCCCCCeEEecccc
Confidence 45677899999999999984 77889999999999999997765 677899999999999999 99999999999
Q ss_pred CeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecC---CcEeEEEeC
Q 019847 166 NVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAK---AQICGLEWN 242 (335)
Q Consensus 166 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~---~~~~~~~~~ 242 (335)
+..++||+|.+ ...+.|.+|...|++++|.|+|. -+++|+ +|++.++||++..+.+..+.+. .++++++|+
T Consensus 209 ~~aklWD~R~~---~c~qtF~ghesDINsv~ffP~G~-afatGS--DD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS 282 (343)
T KOG0286|consen 209 KSAKLWDVRSG---QCVQTFEGHESDINSVRFFPSGD-AFATGS--DDATCRLYDLRADQELAVYSHDSIICGITSVAFS 282 (343)
T ss_pred cceeeeeccCc---ceeEeecccccccceEEEccCCC-eeeecC--CCceeEEEeecCCcEEeeeccCcccCCceeEEEc
Confidence 99999999874 66899999999999999999995 666665 9999999999999999888864 479999999
Q ss_pred CCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEe
Q 019847 243 RHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWE 309 (335)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~ 309 (335)
..|+++++| ..|..+.+||.-.++.+..+.+|..+|+++..+|||.-|++|+.|..++||.
T Consensus 283 ~SGRlLfag------y~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 283 KSGRLLFAG------YDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ccccEEEee------ecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 999999988 5699999999999999999999999999999999999999999999999994
No 6
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.6e-48 Score=300.81 Aligned_cols=264 Identities=22% Similarity=0.400 Sum_probs=245.8
Q ss_pred CCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCC-CCCEEEEeeCCCcEEEEecccCC
Q 019847 56 GEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHW-NGHILTSGSKDKSIINHDVRVSN 134 (335)
Q Consensus 56 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~ 134 (335)
+.+.+|..+.|+++++.|+||+.+|.+++|+..+...+..+.+|...+.++.|+|. ++..+++|+.||++++|++.+..
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~ 252 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET 252 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc
Confidence 45788999999999999999999999999999999999999999999999999996 37799999999999999998554
Q ss_pred eeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCC
Q 019847 135 NVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDG 214 (335)
Q Consensus 135 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~ 214 (335)
++..+.+|...|..++|+|+|++|++++.|.+-++||+++. ..+....+|..+|.+++|.|||. ++++|+ .|.
T Consensus 253 -~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk---~ElL~QEGHs~~v~~iaf~~DGS-L~~tGG--lD~ 325 (459)
T KOG0272|consen 253 -PLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETK---SELLLQEGHSKGVFSIAFQPDGS-LAATGG--LDS 325 (459)
T ss_pred -chhhhhcchhhheeeeecCCCceeeecccccchhhcccccc---hhhHhhcccccccceeEecCCCc-eeeccC--ccc
Confidence 56778899999999999999999999999999999998874 45677789999999999999995 888887 999
Q ss_pred eEEEEECCCCceEEEeecC-CcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcC-C
Q 019847 215 CIKIWNVQKGTCIHGIDAK-AQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSP-D 292 (335)
Q Consensus 215 ~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~ 292 (335)
.-+|||+++|+++..+..+ .+|.++.|+|+|..+++| +.|++++|||++..+.+.++.+|..-|+.+.|+| .
T Consensus 326 ~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATg------s~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~ 399 (459)
T KOG0272|consen 326 LGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATG------SSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQE 399 (459)
T ss_pred hhheeecccCcEEEEecccccceeeEeECCCceEEeec------CCCCcEEEeeecccccceecccccchhhheEecccC
Confidence 9999999999999999876 489999999999999998 7899999999999999999999999999999999 6
Q ss_pred CCEEEEEeCCCcEEEEecCCCCCCCCccccccccccceec
Q 019847 293 GLTVATAGADETIRFWEAFGPSGDEDSVSHLAGLVSLKTS 332 (335)
Q Consensus 293 ~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~i~~~~~~ 332 (335)
|.+|+|++.|++++||.-.+......+.+|...|.++..+
T Consensus 400 g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis 439 (459)
T KOG0272|consen 400 GYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDIS 439 (459)
T ss_pred CeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEec
Confidence 8999999999999999999999999999999999988764
No 7
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=4.8e-46 Score=274.48 Aligned_cols=282 Identities=21% Similarity=0.394 Sum_probs=241.5
Q ss_pred ccccceeeeec---CCceEEEecCCeEEEEEecCCcee---eEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCC
Q 019847 15 EDYYSKVIDWG---RNNVLAVALGPVLFLWKWENGKVK---KLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAE 88 (335)
Q Consensus 15 ~~~~~~~~~~~---~~~~~~~~~~~~i~vw~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~ 88 (335)
+...++.++-. ++.++.++.|..+.+|++...... ....+.+|...|..+..++||++.++++.|+.+++||+.
T Consensus 14 h~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~ 93 (315)
T KOG0279|consen 14 HTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLA 93 (315)
T ss_pred CCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEec
Confidence 34445555544 357888899999999998754332 356778999999999999999999999999999999999
Q ss_pred CceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEee-cCCCCEEEEEeecC--CCEEEEEeCC
Q 019847 89 TSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIK-AHSGEVCGLKWSNE--GNLLASGGDD 165 (335)
Q Consensus 89 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~-~~~~~i~~~~~~~~--~~~l~~~~~d 165 (335)
+++..+.|.+|...|.+++|++ ++..+++|+.|.+|++|+...... ..... .+...|+|++|+|+ ..+|++++.|
T Consensus 94 ~g~~t~~f~GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~ck-~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~D 171 (315)
T KOG0279|consen 94 TGESTRRFVGHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGVCK-YTIHEDSHREWVSCVRFSPNESNPIIVSASWD 171 (315)
T ss_pred CCcEEEEEEecCCceEEEEecC-CCceeecCCCcceeeeeeecccEE-EEEecCCCcCcEEEEEEcCCCCCcEEEEccCC
Confidence 9999999999999999999999 999999999999999999974433 33333 23788999999996 7899999999
Q ss_pred CeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCC
Q 019847 166 NVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHH 245 (335)
Q Consensus 166 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (335)
++|++||+++ .+....+.+|.+.++.++++|||. +.++|+ .||.+.+||++.++.+..+++...|.+++|+|+.
T Consensus 172 ktvKvWnl~~---~~l~~~~~gh~~~v~t~~vSpDGs-lcasGg--kdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnr 245 (315)
T KOG0279|consen 172 KTVKVWNLRN---CQLRTTFIGHSGYVNTVTVSPDGS-LCASGG--KDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNR 245 (315)
T ss_pred ceEEEEccCC---cchhhccccccccEEEEEECCCCC-EEecCC--CCceEEEEEccCCceeEeccCCCeEeeEEecCCc
Confidence 9999999887 455778889999999999999995 777776 9999999999999999999999999999999999
Q ss_pred ceeeeeeeeeeecCCCeEEEEECCCCceeecccC----C-----CCceeEeEEcCCCCEEEEEeCCCcEEEEecC
Q 019847 246 KEILSGHGFSASGDGNKLCLWKYPNMTKVGELQS----S-----NSRILDLSQSPDGLTVATAGADETIRFWEAF 311 (335)
Q Consensus 246 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~----~-----~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~ 311 (335)
..++.+ .+..|+|||+.++..+.+++. . .....+++|++||..|++|-.|+.|++|.+.
T Consensus 246 ywL~~a-------t~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 246 YWLCAA-------TATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred eeEeec-------cCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 888765 366799999999888776642 1 2235778999999999999999999999875
No 8
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.2e-43 Score=257.87 Aligned_cols=285 Identities=19% Similarity=0.309 Sum_probs=240.9
Q ss_pred ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCce--eEeeecccccceeE
Q 019847 28 NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSK--LVRNLEGHHRRVAT 105 (335)
Q Consensus 28 ~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~v~~ 105 (335)
.+++++.|.+|++|...+|.+...++ ...+.|+.+.+.|++++||+++.. .|++||+++++ ++..+.+|...|++
T Consensus 12 iLvsA~YDhTIRfWqa~tG~C~rTiq--h~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVta 88 (311)
T KOG0315|consen 12 ILVSAGYDHTIRFWQALTGICSRTIQ--HPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVTA 88 (311)
T ss_pred EEEeccCcceeeeeehhcCeEEEEEe--cCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccCCceEE
Confidence 46778899999999999999866554 456789999999999999999754 79999998764 58899999999999
Q ss_pred eeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeec
Q 019847 106 SSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRF 185 (335)
Q Consensus 106 ~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 185 (335)
+.|.. +++.+++|++||+++|||++... .+....|..+|+++..+|+...|++|..+|.|++||+........+ .
T Consensus 89 VgF~~-dgrWMyTgseDgt~kIWdlR~~~--~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~l--i 163 (311)
T KOG0315|consen 89 VGFQC-DGRWMYTGSEDGTVKIWDLRSLS--CQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHEL--I 163 (311)
T ss_pred EEEee-cCeEEEecCCCceEEEEeccCcc--cchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCcccccc--C
Confidence 99999 99999999999999999999633 3444568899999999999999999999999999999875332222 2
Q ss_pred cCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCce------EEEeec-CCcEeEEEeCCCCceeeeeeeeeeec
Q 019847 186 TDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTC------IHGIDA-KAQICGLEWNRHHKEILSGHGFSASG 258 (335)
Q Consensus 186 ~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (335)
.....+|.++...|+|..+++.- ..|..++|++-+.+. +..++. ...+..+.+||++++++++ +
T Consensus 164 Pe~~~~i~sl~v~~dgsml~a~n---nkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~------s 234 (311)
T KOG0315|consen 164 PEDDTSIQSLTVMPDGSMLAAAN---NKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATC------S 234 (311)
T ss_pred CCCCcceeeEEEcCCCcEEEEec---CCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEee------c
Confidence 23446799999999998766654 689999999977543 334443 4578999999999999988 7
Q ss_pred CCCeEEEEECCCC-ceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCccccccccccc
Q 019847 259 DGNKLCLWKYPNM-TKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDEDSVSHLAGLVSL 329 (335)
Q Consensus 259 ~~~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~i~~~ 329 (335)
.|.+++||+.++. +....+++|...+.+.+||.||+||+||+.|+.+++|++..++......+|.....+.
T Consensus 235 sdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~ 306 (311)
T KOG0315|consen 235 SDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCV 306 (311)
T ss_pred CCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEE
Confidence 8999999999987 6667788999999999999999999999999999999999999888888887655443
No 9
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=6.2e-42 Score=254.44 Aligned_cols=269 Identities=19% Similarity=0.351 Sum_probs=243.5
Q ss_pred EEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEec
Q 019847 51 LLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDV 130 (335)
Q Consensus 51 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~ 130 (335)
...+++|...|+++.|++|.++|++++.||.+.|||.-+...+..+......|..++|+| .++++++|+-|+...||++
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sP-Sg~~VAcGGLdN~Csiy~l 126 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSP-SGNFVACGGLDNKCSIYPL 126 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECC-CCCeEEecCcCceeEEEec
Confidence 456789999999999999999999999999999999999999999998899999999999 9999999999999999999
Q ss_pred ccC--C---eeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEE
Q 019847 131 RVS--N---NVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVL 205 (335)
Q Consensus 131 ~~~--~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 205 (335)
.+. + +..+.+.+|.+.+.++.|-+| ..|++++.|.+..+||+++ .+.+..+.+|.+.|.++.++|...+.+
T Consensus 127 s~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~---g~~~~~f~GH~gDV~slsl~p~~~ntF 202 (343)
T KOG0286|consen 127 STRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIET---GQQTQVFHGHTGDVMSLSLSPSDGNTF 202 (343)
T ss_pred ccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEccc---ceEEEEecCCcccEEEEecCCCCCCeE
Confidence 854 2 356678899999999999875 6789999999999999887 456888999999999999999555677
Q ss_pred EEecCCCCCeEEEEECCCCceEEEeecC-CcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCC--CC
Q 019847 206 ATGGGREDGCIKIWNVQKGTCIHGIDAK-AQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSS--NS 282 (335)
Q Consensus 206 ~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~--~~ 282 (335)
++|+ -|+..++||++.+.+++.|..+ ..|+++.|.|+|..+++| ++|++.++||++..+.+..+... ..
T Consensus 203 vSg~--cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatG------SDD~tcRlyDlRaD~~~a~ys~~~~~~ 274 (343)
T KOG0286|consen 203 VSGG--CDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATG------SDDATCRLYDLRADQELAVYSHDSIIC 274 (343)
T ss_pred Eecc--cccceeeeeccCcceeEeecccccccceEEEccCCCeeeec------CCCceeEEEeecCCcEEeeeccCcccC
Confidence 7776 8999999999999999999875 589999999999998888 89999999999999988877632 34
Q ss_pred ceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCccccccccccceec
Q 019847 283 RILDLSQSPDGLTVATAGADETIRFWEAFGPSGDEDSVSHLAGLVSLKTS 332 (335)
Q Consensus 283 ~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~i~~~~~~ 332 (335)
+|++++||..|++|++|..|..+.+||.-.++....+.+|...|.++..+
T Consensus 275 gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s 324 (343)
T KOG0286|consen 275 GITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVS 324 (343)
T ss_pred CceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEEC
Confidence 79999999999999999999999999999999999999999999888654
No 10
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=6.7e-42 Score=269.50 Aligned_cols=283 Identities=21% Similarity=0.393 Sum_probs=249.6
Q ss_pred CCCcccccceeeeecC--CceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCC
Q 019847 11 PYLMEDYYSKVIDWGR--NNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAE 88 (335)
Q Consensus 11 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~ 88 (335)
...+....+++++|+. +.++++..||.+++|+..... ...+..|..+|.++.|+..|+||++++.||++.+||..
T Consensus 230 ~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l---~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~ 306 (524)
T KOG0273|consen 230 KSVPSNKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNL---ISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAH 306 (524)
T ss_pred ccCCccCCcceEEecCCCCeEEEeecCcEEEEEecCchh---hhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEecc
Confidence 4556667899999995 456677799999999986654 34567899999999999999999999999999999999
Q ss_pred CceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeE
Q 019847 89 TSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVV 168 (335)
Q Consensus 89 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 168 (335)
+++..+.+.-|..+-..+.|. +...|++++.|+.|+++.+.... +...+.+|.++|.++.|+|.+.+|++++.|+++
T Consensus 307 ~g~~~q~f~~~s~~~lDVdW~--~~~~F~ts~td~~i~V~kv~~~~-P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~Tl 383 (524)
T KOG0273|consen 307 TGTVKQQFEFHSAPALDVDWQ--SNDEFATSSTDGCIHVCKVGEDR-PVKTFIGHHGEVNALKWNPTGSLLASCSDDGTL 383 (524)
T ss_pred CceEEEeeeeccCCccceEEe--cCceEeecCCCceEEEEEecCCC-cceeeecccCceEEEEECCCCceEEEecCCCee
Confidence 999999999998888889997 67789999999999999998555 466778899999999999999999999999999
Q ss_pred EEEEccCCCcccceeeccCCCCCeeEEEecCCCC--------cEEEEecCCCCCeEEEEECCCCceEEEe-ecCCcEeEE
Q 019847 169 RIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQV--------NVLATGGGREDGCIKIWNVQKGTCIHGI-DAKAQICGL 239 (335)
Q Consensus 169 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--------~~~~~~~g~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~ 239 (335)
+||.... ......+..|...|..+.|+|.++ ..+++++ .|++|++||+..+.++..+ ++..+|.++
T Consensus 384 kiWs~~~---~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas--~dstV~lwdv~~gv~i~~f~kH~~pVysv 458 (524)
T KOG0273|consen 384 KIWSMGQ---SNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASAS--FDSTVKLWDVESGVPIHTLMKHQEPVYSV 458 (524)
T ss_pred EeeecCC---CcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEee--cCCeEEEEEccCCceeEeeccCCCceEEE
Confidence 9999665 445777888999999999999764 3455555 7999999999999999999 677899999
Q ss_pred EeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecC
Q 019847 240 EWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAF 311 (335)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~ 311 (335)
+|+|+|+++++| +.||.|++|+.++++.++.+.+.. .|..++|+.+|.+|..+-.||.+.+-|+.
T Consensus 459 afS~~g~ylAsG------s~dg~V~iws~~~~~l~~s~~~~~-~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 459 AFSPNGRYLASG------SLDGCVHIWSTKTGKLVKSYQGTG-GIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred EecCCCcEEEec------CCCCeeEeccccchheeEeecCCC-eEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 999999999999 779999999999999999987654 49999999999999999999999998875
No 11
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.1e-41 Score=258.66 Aligned_cols=281 Identities=23% Similarity=0.401 Sum_probs=250.0
Q ss_pred ccccceeeeecCCceEE--EecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCC-ce
Q 019847 15 EDYYSKVIDWGRNNVLA--VALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAET-SK 91 (335)
Q Consensus 15 ~~~~~~~~~~~~~~~~~--~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~-~~ 91 (335)
....+..+-++|...+. ++.|.+|++||..++++ ...+.+|.+.+..++|+..|++|++++.|=.+++||.++ .+
T Consensus 107 ~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~--e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~ 184 (406)
T KOG0295|consen 107 HRSSVTRVIFHPSEALVVSASEDATIKVFDTETGEL--ERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFR 184 (406)
T ss_pred cccceeeeeeccCceEEEEecCCceEEEEEccchhh--hhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHH
Confidence 44566777788875444 44699999999999998 456779999999999999999999999998899999987 57
Q ss_pred eEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEE
Q 019847 92 LVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIW 171 (335)
Q Consensus 92 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw 171 (335)
+++.+.+|...|.++.|-| .++++++++.|.+|+.|++.++.+ +..+.+|...|..++.+.||.++|+++.|.++++|
T Consensus 185 c~ks~~gh~h~vS~V~f~P-~gd~ilS~srD~tik~We~~tg~c-v~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW 262 (406)
T KOG0295|consen 185 CIKSLIGHEHGVSSVFFLP-LGDHILSCSRDNTIKAWECDTGYC-VKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVW 262 (406)
T ss_pred HHHHhcCcccceeeEEEEe-cCCeeeecccccceeEEeccccee-EEeccCchHhEEEEEecCCeeEEEecCCCceEEEE
Confidence 7888889999999999999 889999999999999999997776 66789999999999999999999999999999999
Q ss_pred EccCCCcccceeeccCCCCCeeEEEecCC--------------CCcEEEEecCCCCCeEEEEECCCCceEEEeecC-CcE
Q 019847 172 ERSKMSSSKSLHRFTDHCGGVKALAWSPH--------------QVNVLATGGGREDGCIKIWNVQKGTCIHGIDAK-AQI 236 (335)
Q Consensus 172 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------------~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~~ 236 (335)
-+.+. .....+..|+.+|.+++|.|. +..++.+++ .|++|++||+.++.++.++..+ +-|
T Consensus 263 ~~~t~---~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~S--rDktIk~wdv~tg~cL~tL~ghdnwV 337 (406)
T KOG0295|consen 263 VVATK---QCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGS--RDKTIKIWDVSTGMCLFTLVGHDNWV 337 (406)
T ss_pred Eeccc---hhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeec--ccceEEEEeccCCeEEEEEeccccee
Confidence 97764 345666789999999999874 224666666 9999999999999999999865 579
Q ss_pred eEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEec
Q 019847 237 CGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEA 310 (335)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~ 310 (335)
..++|+|.|+++++. .+|+++++||++++++...+.+|..-++++.|+.+..+++||+-|..+++|.-
T Consensus 338 r~~af~p~Gkyi~Sc------aDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 338 RGVAFSPGGKYILSC------ADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred eeeEEcCCCeEEEEE------ecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 999999999999988 78999999999999999999999999999999999999999999999999974
No 12
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=4.2e-42 Score=266.10 Aligned_cols=284 Identities=21% Similarity=0.436 Sum_probs=243.8
Q ss_pred cccccceeeeecCC--ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCce
Q 019847 14 MEDYYSKVIDWGRN--NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSK 91 (335)
Q Consensus 14 ~~~~~~~~~~~~~~--~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 91 (335)
.-...+..+.|.++ ++++++..|.+.+|+..+-.. ..-+..|.++|+++.|++++.++++|..+|.|++|+..- .
T Consensus 94 Kvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnF--EtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm-n 170 (464)
T KOG0284|consen 94 KVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNF--ETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM-N 170 (464)
T ss_pred ccccceeeEEEcCCCceeEeecccccEEEecCceeeH--HHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch-h
Confidence 34567888999985 789999999999999754433 223468999999999999999999999999999999764 4
Q ss_pred eEeeecccc-cceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEE
Q 019847 92 LVRNLEGHH-RRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRI 170 (335)
Q Consensus 92 ~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 170 (335)
.++.+..|. ..|++++|+| ++..|++++.||+|+|||.....+ ...+.+|.-.|.+++|+|...++++++.|..|++
T Consensus 171 nVk~~~ahh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~ke-e~vL~GHgwdVksvdWHP~kgLiasgskDnlVKl 248 (464)
T KOG0284|consen 171 NVKIIQAHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKE-ERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKL 248 (464)
T ss_pred hhHHhhHhhhhhhheeccCC-CCceeEEecCCCeEEEEeccCCch-hheeccCCCCcceeccCCccceeEEccCCceeEe
Confidence 455555555 9999999999 899999999999999999986655 5557899999999999999999999999999999
Q ss_pred EEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec-CCcEeEEEeCCCCceee
Q 019847 171 WERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA-KAQICGLEWNRHHKEIL 249 (335)
Q Consensus 171 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 249 (335)
||.++ ..++.++..|+..|..+.|+|++ .++++++ .|..++++|+++.+.+..++. ...+.++.|+|-...++
T Consensus 249 WDprS---g~cl~tlh~HKntVl~~~f~~n~-N~Llt~s--kD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lf 322 (464)
T KOG0284|consen 249 WDPRS---GSCLATLHGHKNTVLAVKFNPNG-NWLLTGS--KDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLF 322 (464)
T ss_pred ecCCC---cchhhhhhhccceEEEEEEcCCC-CeeEEcc--CCceEEEEehhHhHHHHHhhcchhhheeeccccccccce
Confidence 99776 55688888999999999999999 5666655 999999999998888888884 56899999999888775
Q ss_pred eeeeeeeecCCCeEEEEECCCCceeeccc-CCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCC
Q 019847 250 SGHGFSASGDGNKLCLWKYPNMTKVGELQ-SSNSRILDLSQSPDGLTVATAGADETIRFWEAFGP 313 (335)
Q Consensus 250 ~~~~~~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~ 313 (335)
+. ++.||.|..|.+...+++..+. +|...|.+++|+|-|.+|++|+.|.++++|.-..+
T Consensus 323 ts-----gg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~rp 382 (464)
T KOG0284|consen 323 TS-----GGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNRP 382 (464)
T ss_pred ee-----ccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccCCC
Confidence 43 4789999999999666666654 79999999999999999999999999999976554
No 13
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.8e-39 Score=237.84 Aligned_cols=279 Identities=20% Similarity=0.402 Sum_probs=229.1
Q ss_pred cceeeeecCC---ceEEEecCCeEEEEEecCCc-eeeEEee-cCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCc--
Q 019847 18 YSKVIDWGRN---NVLAVALGPVLFLWKWENGK-VKKLLQV-PGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETS-- 90 (335)
Q Consensus 18 ~~~~~~~~~~---~~~~~~~~~~i~vw~~~~~~-~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-- 90 (335)
.+-.++|++. .+++++.|+.|++|+...+. ......+ .+|+..|++++|+|.|++||+|+.|.++.||.-..+
T Consensus 16 r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~ef 95 (312)
T KOG0645|consen 16 RVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEF 95 (312)
T ss_pred cEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCce
Confidence 5677999997 36667789999999988432 2222222 579999999999999999999999999999986644
Q ss_pred eeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCC--eeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeE
Q 019847 91 KLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSN--NVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVV 168 (335)
Q Consensus 91 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 168 (335)
+++..+++|+..|.+++|++ ++++||++++|+.|-+|.+.... .+...+++|...|..+.|+|...+|++++.|.+|
T Consensus 96 ecv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTI 174 (312)
T KOG0645|consen 96 ECVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTI 174 (312)
T ss_pred eEEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeE
Confidence 77889999999999999999 99999999999999999998544 3567789999999999999998999999999999
Q ss_pred EEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCcee
Q 019847 169 RIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEI 248 (335)
Q Consensus 169 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (335)
++|+-.........+++.+|...|.+++|+|.|.+++.+ + .|++++||...+.- ...+..++..+.|. ...+
T Consensus 175 k~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~-s--dD~tv~Iw~~~~~~---~~~~sr~~Y~v~W~--~~~I 246 (312)
T KOG0645|consen 175 KVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSC-S--DDGTVSIWRLYTDL---SGMHSRALYDVPWD--NGVI 246 (312)
T ss_pred EEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEe-c--CCcceEeeeeccCc---chhcccceEeeeec--ccce
Confidence 999977566778899999999999999999999665554 4 89999999866221 11234678888888 4455
Q ss_pred eeeeeeeeecCCCeEEEEECCCC------ceee-cccCCCCceeEeEEcCC-CCEEEEEeCCCcEEEEecC
Q 019847 249 LSGHGFSASGDGNKLCLWKYPNM------TKVG-ELQSSNSRILDLSQSPD-GLTVATAGADETIRFWEAF 311 (335)
Q Consensus 249 ~~~~~~~~~~~~~~i~i~d~~~~------~~~~-~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~v~iw~~~ 311 (335)
+++ +.|+.|++|.-... +.+. .-..|...|++++|+|. ..+|++|+.||.|++|.+.
T Consensus 247 aS~------ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 247 ASG------GGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred Eec------cCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 555 77999999976532 1122 33578889999999994 6789999999999999875
No 14
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.9e-40 Score=261.37 Aligned_cols=306 Identities=19% Similarity=0.388 Sum_probs=249.8
Q ss_pred ccccceeeeecC--C-ceEEEecCCeEEEEEecC--Cceee------EEeec----CCCCCceEEEEcCCCCEEEEEECC
Q 019847 15 EDYYSKVIDWGR--N-NVLAVALGPVLFLWKWEN--GKVKK------LLQVP----GEDDYPTSVSWSHDAKTLAVGYMD 79 (335)
Q Consensus 15 ~~~~~~~~~~~~--~-~~~~~~~~~~i~vw~~~~--~~~~~------~~~~~----~~~~~v~~~~~~~~~~~l~~~~~d 79 (335)
+.-.+.+.+|+| + .+.+++.+...++|++.. ..... .+... ..+..|++++|+.+|..||+|+.|
T Consensus 177 ~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~ 256 (524)
T KOG0273|consen 177 HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSED 256 (524)
T ss_pred CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecC
Confidence 455678899999 3 344455788999999874 11111 11111 124679999999999999999999
Q ss_pred CcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEE
Q 019847 80 SKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLL 159 (335)
Q Consensus 80 g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 159 (335)
|.+++|+. +|.++..+..|.++|.++.|+. .+++|++++.|+++.+||..++.. .+.+.-|+.+-..+.|-.+ .-+
T Consensus 257 G~~riw~~-~G~l~~tl~~HkgPI~slKWnk-~G~yilS~~vD~ttilwd~~~g~~-~q~f~~~s~~~lDVdW~~~-~~F 332 (524)
T KOG0273|consen 257 GEARIWNK-DGNLISTLGQHKGPIFSLKWNK-KGTYILSGGVDGTTILWDAHTGTV-KQQFEFHSAPALDVDWQSN-DEF 332 (524)
T ss_pred cEEEEEec-CchhhhhhhccCCceEEEEEcC-CCCEEEeccCCccEEEEeccCceE-EEeeeeccCCccceEEecC-ceE
Confidence 99999996 5788889999999999999999 999999999999999999986554 6667778888788899755 568
Q ss_pred EEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCC-cEeE
Q 019847 160 ASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKA-QICG 238 (335)
Q Consensus 160 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~-~~~~ 238 (335)
++++.|+.|+++.+.. ..+..++.+|.++|.++.|+|.+. |+++++ .|++++||++........+..+. .|..
T Consensus 333 ~ts~td~~i~V~kv~~---~~P~~t~~GH~g~V~alk~n~tg~-LLaS~S--dD~TlkiWs~~~~~~~~~l~~Hskei~t 406 (524)
T KOG0273|consen 333 ATSSTDGCIHVCKVGE---DRPVKTFIGHHGEVNALKWNPTGS-LLASCS--DDGTLKIWSMGQSNSVHDLQAHSKEIYT 406 (524)
T ss_pred eecCCCceEEEEEecC---CCcceeeecccCceEEEEECCCCc-eEEEec--CCCeeEeeecCCCcchhhhhhhccceee
Confidence 9999999999999775 466888889999999999999995 777777 89999999999888888887654 8999
Q ss_pred EEeCCCCcee---eeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCC
Q 019847 239 LEWNRHHKEI---LSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSG 315 (335)
Q Consensus 239 ~~~~~~~~~~---~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~ 315 (335)
+.|+|.|... -.+..+++++.|+.|++||+..+.++..+..|..+|.+++|+|+|+++|+|+.||.|.+|+...++.
T Consensus 407 ~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l 486 (524)
T KOG0273|consen 407 IKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKL 486 (524)
T ss_pred EeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchhe
Confidence 9999987532 1222345568899999999999999999999999999999999999999999999999999998877
Q ss_pred CCCcccccccccccee
Q 019847 316 DEDSVSHLAGLVSLKT 331 (335)
Q Consensus 316 ~~~~~~~~~~i~~~~~ 331 (335)
.....+ ..+|..+.+
T Consensus 487 ~~s~~~-~~~Ifel~W 501 (524)
T KOG0273|consen 487 VKSYQG-TGGIFELCW 501 (524)
T ss_pred eEeecC-CCeEEEEEE
Confidence 664433 333544443
No 15
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=8.3e-41 Score=278.86 Aligned_cols=253 Identities=24% Similarity=0.433 Sum_probs=225.8
Q ss_pred eEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCc-------------------------------eeEeeecc
Q 019847 50 KLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETS-------------------------------KLVRNLEG 98 (335)
Q Consensus 50 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-------------------------------~~~~~~~~ 98 (335)
..+++..-...++|..|++|+.+||.|..|..|++|.+... ...+.+.+
T Consensus 370 c~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~G 449 (707)
T KOG0263|consen 370 CMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYG 449 (707)
T ss_pred EEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeec
Confidence 34444445567999999999999999999999999987631 12344678
Q ss_pred cccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCc
Q 019847 99 HHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSS 178 (335)
Q Consensus 99 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 178 (335)
|.++|..+.|+| +.++|++++.|+++++|.+.+... ...+.+|..+|+.+.|+|.|-+||+++.|++.++|....
T Consensus 450 H~GPVyg~sFsP-d~rfLlScSED~svRLWsl~t~s~-~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~--- 524 (707)
T KOG0263|consen 450 HSGPVYGCSFSP-DRRFLLSCSEDSSVRLWSLDTWSC-LVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDH--- 524 (707)
T ss_pred CCCceeeeeecc-cccceeeccCCcceeeeeccccee-EEEecCCCcceeeEEecCCceEEEecCCCceeeeeeccc---
Confidence 999999999999 999999999999999999997766 455779999999999999999999999999999999665
Q ss_pred ccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecC-CcEeEEEeCCCCceeeeeeeeeee
Q 019847 179 SKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAK-AQICGLEWNRHHKEILSGHGFSAS 257 (335)
Q Consensus 179 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 257 (335)
..+++.+.+|.+.|.|+.|+|+.. ++++|+ .|.++|+||..+|..++.+.+| .+|.+++|+|+|+++++|
T Consensus 525 ~~PlRifaghlsDV~cv~FHPNs~-Y~aTGS--sD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg------ 595 (707)
T KOG0263|consen 525 NKPLRIFAGHLSDVDCVSFHPNSN-YVATGS--SDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASG------ 595 (707)
T ss_pred CCchhhhcccccccceEEECCccc-ccccCC--CCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeec------
Confidence 567888999999999999999985 666665 9999999999999999999864 689999999999999998
Q ss_pred cCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCC
Q 019847 258 GDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGD 316 (335)
Q Consensus 258 ~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~ 316 (335)
++|+.|.+||+.+++++..+.+|.+.|.++.|+.||..||+|+.|..|++||+......
T Consensus 596 ~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 596 DEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIEL 654 (707)
T ss_pred ccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhccc
Confidence 88999999999999999999999999999999999999999999999999999876554
No 16
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=9e-40 Score=249.81 Aligned_cols=286 Identities=21% Similarity=0.288 Sum_probs=238.9
Q ss_pred CcccccceeeeecCC-c-eEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCc
Q 019847 13 LMEDYYSKVIDWGRN-N-VLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETS 90 (335)
Q Consensus 13 ~~~~~~~~~~~~~~~-~-~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 90 (335)
..+...+.+++.+|+ . .++++.|..-.+|++.+++. ...+.+|++.|+++.|+.+|.+||+|..+|.|+||+..++
T Consensus 61 ~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~--~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg 138 (399)
T KOG0296|consen 61 DKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEF--AGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTG 138 (399)
T ss_pred hhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcc--eeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccC
Confidence 345556777777764 3 44456888999999999984 6677899999999999999999999999999999999999
Q ss_pred eeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEE
Q 019847 91 KLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRI 170 (335)
Q Consensus 91 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 170 (335)
.....+...-..+.-+.|+| ...+|++|+.||.+.+|.+.+. ...+.+.+|..++++=.|.|+|+.++++..||+|++
T Consensus 139 ~~~~~~~~e~~dieWl~WHp-~a~illAG~~DGsvWmw~ip~~-~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~ 216 (399)
T KOG0296|consen 139 GEQWKLDQEVEDIEWLKWHP-RAHILLAGSTDGSVWMWQIPSQ-ALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIV 216 (399)
T ss_pred ceEEEeecccCceEEEEecc-cccEEEeecCCCcEEEEECCCc-ceeeEecCCCCCcccccccCCCceEEEEecCceEEE
Confidence 98888876677888999999 9999999999999999999865 457888999999999999999999999999999999
Q ss_pred EEccCCCccccee----------------------------------------ecc--------CCCCCeeEEEecCCCC
Q 019847 171 WERSKMSSSKSLH----------------------------------------RFT--------DHCGGVKALAWSPHQV 202 (335)
Q Consensus 171 wd~~~~~~~~~~~----------------------------------------~~~--------~~~~~v~~~~~~~~~~ 202 (335)
||+.++.....+. ... .+...+.++.+.|...
T Consensus 217 Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss 296 (399)
T KOG0296|consen 217 WNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSS 296 (399)
T ss_pred EecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhccccc
Confidence 9987653211111 000 1122233333333322
Q ss_pred --cEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCC
Q 019847 203 --NVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSS 280 (335)
Q Consensus 203 --~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~ 280 (335)
-|+++|+ .||+|.|||+...++.+..++...|..+.|-+ ..+++++ +.+|.|+.||.++|+++.++.+|
T Consensus 297 ~lpL~A~G~--vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~------c~~g~v~~wDaRtG~l~~~y~GH 367 (399)
T KOG0296|consen 297 KLPLAACGS--VDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTA------CANGKVRQWDARTGQLKFTYTGH 367 (399)
T ss_pred ccchhhccc--ccceEEEEecccchhheeccCCCceEEEEEcC-cchheee------ccCceEEeeeccccceEEEEecC
Confidence 2455554 99999999999999999999999999999999 7777776 66999999999999999999999
Q ss_pred CCceeEeEEcCCCCEEEEEeCCCcEEEEecC
Q 019847 281 NSRILDLSQSPDGLTVATAGADETIRFWEAF 311 (335)
Q Consensus 281 ~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~ 311 (335)
...|.+++++|+.++++|+|.|++.+||+..
T Consensus 368 ~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 368 QMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred chheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 9999999999999999999999999999864
No 17
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.9e-39 Score=236.02 Aligned_cols=264 Identities=17% Similarity=0.269 Sum_probs=229.1
Q ss_pred cccceeeeecCC-ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEe
Q 019847 16 DYYSKVIDWGRN-NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVR 94 (335)
Q Consensus 16 ~~~~~~~~~~~~-~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~ 94 (335)
+..++.+...++ +.++++....|++||+++++..+...+.+|+..|+.+.|..+|+.+++|+.||+++|||++...+-+
T Consensus 40 dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR 119 (311)
T KOG0315|consen 40 DSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQR 119 (311)
T ss_pred ccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccch
Confidence 456777888874 6888888999999999999998999999999999999999999999999999999999999977666
Q ss_pred eecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEcc
Q 019847 95 NLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERS 174 (335)
Q Consensus 95 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 174 (335)
.++ |..+|+++..+| +...|++|..+|.|++||+.+.............+|.++...|||.+++.+...|..++|++-
T Consensus 120 ~~~-~~spVn~vvlhp-nQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~ 197 (311)
T KOG0315|consen 120 NYQ-HNSPVNTVVLHP-NQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLL 197 (311)
T ss_pred hcc-CCCCcceEEecC-CcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEcc
Confidence 666 779999999999 888999999999999999987766555566667889999999999999999999999999986
Q ss_pred CCC---cccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCC-ceEEEeecC-CcEeEEEeCCCCceee
Q 019847 175 KMS---SSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKG-TCIHGIDAK-AQICGLEWNRHHKEIL 249 (335)
Q Consensus 175 ~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~ 249 (335)
... ...++..++.|++.+..+.++|++++|++++ .|.+++||+.++. +....++.+ .-+..++||.+|.+++
T Consensus 198 ~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~s---sdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~Ylv 274 (311)
T KOG0315|consen 198 NHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCS---SDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLV 274 (311)
T ss_pred CCCccccceEhhheecccceEEEEEECCCCcEEEeec---CCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEE
Confidence 532 3455677889999999999999998666655 6999999999987 444455554 4689999999999999
Q ss_pred eeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEc
Q 019847 250 SGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQS 290 (335)
Q Consensus 250 ~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~ 290 (335)
++ +.|+.+++|++..++.+....+|.....+++..
T Consensus 275 Ta------ssd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 275 TA------SSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred ec------CCCCceeecccccCceeeecCCcccccEEEEee
Confidence 98 779999999999999999999998887777653
No 18
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.4e-39 Score=266.67 Aligned_cols=288 Identities=18% Similarity=0.388 Sum_probs=244.7
Q ss_pred ccccceeeeecC-CceEEEecC--CeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCce
Q 019847 15 EDYYSKVIDWGR-NNVLAVALG--PVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSK 91 (335)
Q Consensus 15 ~~~~~~~~~~~~-~~~~~~~~~--~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 91 (335)
.+..+..++|+. +.-++.++. |.+.||++++... +++.++|...+++++++|||+++|+|+.||.|+|||...+-
T Consensus 306 s~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsY--VlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sgf 383 (893)
T KOG0291|consen 306 SDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESY--VLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGF 383 (893)
T ss_pred ccceeeEEEecccCCEEEEcCCccceEEEEEeeccce--eeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCce
Confidence 356677888884 344554433 5999999998875 56677999999999999999999999999999999999999
Q ss_pred eEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCC-eEEE
Q 019847 92 LVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDN-VVRI 170 (335)
Q Consensus 92 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~i 170 (335)
+..+|..|...|+.+.|+. .++.+++++-||+|+.||+...........+..-...|++..|.|.++.+|+.|. .|.+
T Consensus 384 C~vTFteHts~Vt~v~f~~-~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~Ifv 462 (893)
T KOG0291|consen 384 CFVTFTEHTSGVTAVQFTA-RGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFV 462 (893)
T ss_pred EEEEeccCCCceEEEEEEe-cCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEE
Confidence 9999999999999999999 9999999999999999999877765544444555678999999999999999886 5999
Q ss_pred EEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCC-ceEEEeecCCcEeEEEeCCCCceee
Q 019847 171 WERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKG-TCIHGIDAKAQICGLEWNRHHKEIL 249 (335)
Q Consensus 171 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (335)
|++++ ++.+..+.+|++||.+++|+|.+. ++++++ .|.+|++||+-.. ..+.+++....+..++|.|+|+.++
T Consensus 463 WS~qT---GqllDiLsGHEgPVs~l~f~~~~~-~LaS~S--WDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~ela 536 (893)
T KOG0291|consen 463 WSVQT---GQLLDILSGHEGPVSGLSFSPDGS-LLASGS--WDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELA 536 (893)
T ss_pred EEeec---CeeeehhcCCCCcceeeEEccccC-eEEecc--ccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEE
Confidence 99877 566888899999999999999996 777766 9999999998543 5677888889999999999999999
Q ss_pred eeeeeeeecCCCeEEEEECCCCceeecccC--------------------CCCceeEeEEcCCCCEEEEEeCCCcEEEEe
Q 019847 250 SGHGFSASGDGNKLCLWKYPNMTKVGELQS--------------------SNSRILDLSQSPDGLTVATAGADETIRFWE 309 (335)
Q Consensus 250 ~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~--------------------~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~ 309 (335)
+. +-||.|.+||...+..+..+.+ ....++.+++++||..+++||....|.+|+
T Consensus 537 Va------TldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~ 610 (893)
T KOG0291|consen 537 VA------TLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYD 610 (893)
T ss_pred EE------EecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEE
Confidence 87 5699999999987666544321 224689999999999999999999999999
Q ss_pred cCCCCCCC
Q 019847 310 AFGPSGDE 317 (335)
Q Consensus 310 ~~~~~~~~ 317 (335)
+..+-...
T Consensus 611 v~~~vllk 618 (893)
T KOG0291|consen 611 VPEGVLLK 618 (893)
T ss_pred Cchhheee
Confidence 98764443
No 19
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=2.7e-38 Score=256.75 Aligned_cols=279 Identities=26% Similarity=0.497 Sum_probs=241.6
Q ss_pred ccccceeeeecCC--ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCcee
Q 019847 15 EDYYSKVIDWGRN--NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKL 92 (335)
Q Consensus 15 ~~~~~~~~~~~~~--~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 92 (335)
+...+.+++|+++ .+++++.++.+++|++++++.. ..+..|...+..+.|+|+++++++++.+|.|++|++.+++.
T Consensus 8 h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~ 85 (289)
T cd00200 8 HTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELL--RTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGEC 85 (289)
T ss_pred cCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcE--EEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccc
Confidence 4467889999984 4556667999999999988743 34557888899999999999999999999999999999888
Q ss_pred EeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEE
Q 019847 93 VRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWE 172 (335)
Q Consensus 93 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd 172 (335)
+..+..|...+.++.|++ ++.++++++.++.+.+||+++.+. ...+..|...+.+++|+|++.++++++.|+.|++||
T Consensus 86 ~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d 163 (289)
T cd00200 86 VRTLTGHTSYVSSVAFSP-DGRILSSSSRDKTIKVWDVETGKC-LTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWD 163 (289)
T ss_pred eEEEeccCCcEEEEEEcC-CCCEEEEecCCCeEEEEECCCcEE-EEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEE
Confidence 888888999999999999 788888888899999999985543 555668899999999999989999888899999999
Q ss_pred ccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEe-ecCCcEeEEEeCCCCceeeee
Q 019847 173 RSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGI-DAKAQICGLEWNRHHKEILSG 251 (335)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 251 (335)
++.. +.+..+..|...+.++.|+|++..+++++ .++.+++||+++++.+..+ .+...+.++.|+|++..++++
T Consensus 164 ~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 237 (289)
T cd00200 164 LRTG---KCVATLTGHTGEVNSVAFSPDGEKLLSSS---SDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASG 237 (289)
T ss_pred cccc---ccceeEecCccccceEEECCCcCEEEEec---CCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEE
Confidence 8754 34555667888999999999997666654 5999999999999888888 455689999999997777765
Q ss_pred eeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEe
Q 019847 252 HGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWE 309 (335)
Q Consensus 252 ~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~ 309 (335)
+.++.+++||+.+++....+..|...|.+++|+|++++|++++.||.+++|+
T Consensus 238 ------~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 238 ------SEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred ------cCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 5699999999999999999999999999999999999999999999999996
No 20
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=5.7e-39 Score=237.17 Aligned_cols=255 Identities=18% Similarity=0.302 Sum_probs=218.1
Q ss_pred eeEEeecCCCCCceEEEEcCC-CCEEEEEECCCcEEEEeCC-----CceeEeeecccccceeEeeecCCCCCEEEEeeCC
Q 019847 49 KKLLQVPGEDDYPTSVSWSHD-AKTLAVGYMDSKLQLWDAE-----TSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKD 122 (335)
Q Consensus 49 ~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iw~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 122 (335)
...-.+++|++.|+.++..+. .+.+++++.|.++.+|++. .|..++.+++|...|..+..++ ++++.++++.|
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~-dg~~alS~swD 84 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSS-DGNFALSASWD 84 (315)
T ss_pred eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEcc-CCceEEecccc
Confidence 344567899999999999986 5688899999999999875 4677899999999999999999 99999999999
Q ss_pred CcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccC--CCCCeeEEEecCC
Q 019847 123 KSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTD--HCGGVKALAWSPH 200 (335)
Q Consensus 123 g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~v~~~~~~~~ 200 (335)
+.+++||+.+++ ..+.+.+|...|.+++|++|.+.+++|+.|.+|++|++.... ..+... +.+.|.|+.|+|+
T Consensus 85 ~~lrlWDl~~g~-~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~c----k~t~~~~~~~~WVscvrfsP~ 159 (315)
T KOG0279|consen 85 GTLRLWDLATGE-STRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVC----KYTIHEDSHREWVSCVRFSPN 159 (315)
T ss_pred ceEEEEEecCCc-EEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccE----EEEEecCCCcCcEEEEEEcCC
Confidence 999999999774 577789999999999999999999999999999999977532 222222 3788999999999
Q ss_pred C-CcEEEEecCCCCCeEEEEECCCCceEEEeecC-CcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeeccc
Q 019847 201 Q-VNVLATGGGREDGCIKIWNVQKGTCIHGIDAK-AQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQ 278 (335)
Q Consensus 201 ~-~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~ 278 (335)
. .-++++++ .|+++++||+++.+....+..+ ..++.++++|||...++| +.||.+.+||++.++.+..+.
T Consensus 160 ~~~p~Ivs~s--~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasG------gkdg~~~LwdL~~~k~lysl~ 231 (315)
T KOG0279|consen 160 ESNPIIVSAS--WDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASG------GKDGEAMLWDLNEGKNLYSLE 231 (315)
T ss_pred CCCcEEEEcc--CCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecC------CCCceEEEEEccCCceeEecc
Confidence 4 34666665 9999999999999988887765 579999999999999987 899999999999999987764
Q ss_pred CCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCc
Q 019847 279 SSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDEDS 319 (335)
Q Consensus 279 ~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~ 319 (335)
|...|.+++|+|+.-.|+.+. +..|+|||+.......++
T Consensus 232 -a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l 270 (315)
T KOG0279|consen 232 -AFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEEL 270 (315)
T ss_pred -CCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhc
Confidence 667899999999987776665 456999999998766554
No 21
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.8e-38 Score=253.55 Aligned_cols=305 Identities=20% Similarity=0.288 Sum_probs=246.6
Q ss_pred ccccceeeeecCC---ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCce
Q 019847 15 EDYYSKVIDWGRN---NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSK 91 (335)
Q Consensus 15 ~~~~~~~~~~~~~---~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 91 (335)
+...++++++.+. ++++++.|+.|.+|+-..-+. ...+..|..-|.|+.|+|||+++++.+.||++.+||-.+++
T Consensus 146 hSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKF--k~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge 223 (603)
T KOG0318|consen 146 HSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKF--KSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGE 223 (603)
T ss_pred cceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeee--eecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCcc
Confidence 4556788888874 688889999999998655554 34556899999999999999999999999999999999999
Q ss_pred eEeeec---ccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCC----------------------------------
Q 019847 92 LVRNLE---GHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSN---------------------------------- 134 (335)
Q Consensus 92 ~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~---------------------------------- 134 (335)
.+..+. +|.+.|.+++|+| ++..+++++.|.++++||+.+..
T Consensus 224 ~vg~l~~~~aHkGsIfalsWsP-Ds~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~i 302 (603)
T KOG0318|consen 224 KVGELEDSDAHKGSIFALSWSP-DSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTI 302 (603)
T ss_pred EEEEecCCCCccccEEEEEECC-CCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEE
Confidence 999998 8999999999999 99999999999999999986543
Q ss_pred --------eeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccc--------e----------------
Q 019847 135 --------NVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKS--------L---------------- 182 (335)
Q Consensus 135 --------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--------~---------------- 182 (335)
.+...+.+|...|+++..+|++.+|++|+.||.|.-||...+...+. +
T Consensus 303 n~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~ 382 (603)
T KOG0318|consen 303 NYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGW 382 (603)
T ss_pred EEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEec
Confidence 12234568999999999999999999999999999999754322110 0
Q ss_pred ----e------------------------------------------eccC--------CCCCeeEEEecCCCCcEEEEe
Q 019847 183 ----H------------------------------------------RFTD--------HCGGVKALAWSPHQVNVLATG 208 (335)
Q Consensus 183 ----~------------------------------------------~~~~--------~~~~v~~~~~~~~~~~~~~~~ 208 (335)
+ .+.. -.-...+++++|++. .++.|
T Consensus 383 Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~-~vaVG 461 (603)
T KOG0318|consen 383 DDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGS-EVAVG 461 (603)
T ss_pred CCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCC-EEEEe
Confidence 0 0000 011245677788774 56666
Q ss_pred cCCCCCeEEEEECCCCce---EEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceee-cccCCCCce
Q 019847 209 GGREDGCIKIWNVQKGTC---IHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVG-ELQSSNSRI 284 (335)
Q Consensus 209 ~g~~d~~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~-~~~~~~~~i 284 (335)
+ .|+.+++|.+..+.. ...+++..++++++++|++.+++++ ...+.+.+||+.+.+... .+.-|...|
T Consensus 462 G--~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~------Da~rkvv~yd~~s~~~~~~~w~FHtakI 533 (603)
T KOG0318|consen 462 G--QDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAG------DASRKVVLYDVASREVKTNRWAFHTAKI 533 (603)
T ss_pred c--ccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEe------ccCCcEEEEEcccCceecceeeeeeeeE
Confidence 5 999999999987653 3455678899999999999999988 568999999999877633 234599999
Q ss_pred eEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCC-cccccccccccee
Q 019847 285 LDLSQSPDGLTVATAGADETIRFWEAFGPSGDED-SVSHLAGLVSLKT 331 (335)
Q Consensus 285 ~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~-~~~~~~~i~~~~~ 331 (335)
.+++|+|+..++|||+-|-.|.||+++.+..... .-.|..+|.++.+
T Consensus 534 ~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~w 581 (603)
T KOG0318|consen 534 NCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAW 581 (603)
T ss_pred EEEEeCCCceEEEeccccceEEEEEccChhhheEeccccccCceeEEE
Confidence 9999999999999999999999999999866543 3478877877765
No 22
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.5e-39 Score=247.00 Aligned_cols=282 Identities=21% Similarity=0.365 Sum_probs=245.1
Q ss_pred ccccceeeeecCC-c-eEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCcee
Q 019847 15 EDYYSKVIDWGRN-N-VLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKL 92 (335)
Q Consensus 15 ~~~~~~~~~~~~~-~-~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 92 (335)
+..++.|+++.|. . +++++.|++++|||+.++++ ..++.+|-..|..+++|+-..|+++++.|+.|+.||++..+.
T Consensus 150 HlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~L--kltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkv 227 (460)
T KOG0285|consen 150 HLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQL--KLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKV 227 (460)
T ss_pred ccceEEEEeeCCCceeEEecCCCceeEEEEcccCeE--EEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhh
Confidence 5678999999984 3 56677899999999999987 456779999999999999999999999999999999999999
Q ss_pred EeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEE
Q 019847 93 VRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWE 172 (335)
Q Consensus 93 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd 172 (335)
++.+.+|-..|.+++.+| .-+.|++|+.|.++++||+++... +..+.+|..+|.++.+.|-...+++|+.|++|++||
T Consensus 228 IR~YhGHlS~V~~L~lhP-Tldvl~t~grDst~RvWDiRtr~~-V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWD 305 (460)
T KOG0285|consen 228 IRHYHGHLSGVYCLDLHP-TLDVLVTGGRDSTIRVWDIRTRAS-VHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWD 305 (460)
T ss_pred HHHhccccceeEEEeccc-cceeEEecCCcceEEEeeecccce-EEEecCCCCcceeEEeecCCCceEEecCCceEEEee
Confidence 999999999999999999 899999999999999999997765 667899999999999999778899999999999999
Q ss_pred ccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCC-cEeEEEeCCCCceeeee
Q 019847 173 RSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKA-QICGLEWNRHHKEILSG 251 (335)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 251 (335)
++.+ +....+..|+..+.+++.+|.. +++++++ ...|+-|++..|..+..+..+. .+.++....++-++ +|
T Consensus 306 l~ag---kt~~tlt~hkksvral~lhP~e-~~fASas---~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~-~G 377 (460)
T KOG0285|consen 306 LRAG---KTMITLTHHKKSVRALCLHPKE-NLFASAS---PDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLV-SG 377 (460)
T ss_pred eccC---ceeEeeecccceeeEEecCCch-hhhhccC---CccceeccCCccchhhccccccceeeeeeeccCceEE-Ec
Confidence 8874 4577778899999999999987 5777764 5679999999999988877654 67888888777544 34
Q ss_pred eeeeeecCCCeEEEEECCCCceeecccC--------CCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCC
Q 019847 252 HGFSASGDGNKLCLWKYPNMTKVGELQS--------SNSRILDLSQSPDGLTVATAGADETIRFWEAFGPS 314 (335)
Q Consensus 252 ~~~~~~~~~~~i~i~d~~~~~~~~~~~~--------~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~ 314 (335)
+++|.+.+||.+++...+..+. .+..|.+.+|...|..|++|..|.+|++|+-+...
T Consensus 378 ------~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe~a 442 (460)
T KOG0285|consen 378 ------GDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDEHA 442 (460)
T ss_pred ------CCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEeccccc
Confidence 7899999999998876655421 23468999999999999999999999999877643
No 23
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=7.1e-39 Score=272.65 Aligned_cols=284 Identities=25% Similarity=0.444 Sum_probs=242.2
Q ss_pred cccceeeeecCC--ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeC-CCcee
Q 019847 16 DYYSKVIDWGRN--NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDA-ETSKL 92 (335)
Q Consensus 16 ~~~~~~~~~~~~--~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~-~~~~~ 92 (335)
...+.++.++++ .+++++.++.+++|+....+......+.+|...|.+++|+|+++++++++.|++|+|||+ ..+..
T Consensus 159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~ 238 (456)
T KOG0266|consen 159 CPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRN 238 (456)
T ss_pred cCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeE
Confidence 455677788874 455566899999999976662223444789999999999999999999999999999999 55689
Q ss_pred EeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEE
Q 019847 93 VRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWE 172 (335)
Q Consensus 93 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd 172 (335)
++.+++|...|++++|+| .++++++|+.|++|++||+++ ..+...+.+|.+.|++++|++++++|++++.|+.|++||
T Consensus 239 ~~~l~gH~~~v~~~~f~p-~g~~i~Sgs~D~tvriWd~~~-~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd 316 (456)
T KOG0266|consen 239 LKTLKGHSTYVTSVAFSP-DGNLLVSGSDDGTVRIWDVRT-GECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWD 316 (456)
T ss_pred EEEecCCCCceEEEEecC-CCCEEEEecCCCcEEEEeccC-CeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEE
Confidence 999999999999999999 779999999999999999997 455788999999999999999999999999999999999
Q ss_pred ccCCCcccceeeccCCCC--CeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCC----cEeEEEeCCCCc
Q 019847 173 RSKMSSSKSLHRFTDHCG--GVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKA----QICGLEWNRHHK 246 (335)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~----~~~~~~~~~~~~ 246 (335)
+.++... ....+.++.. +++++.|+|++.++++.. .|+.+++||++.+.....+..+. .+.+...++.++
T Consensus 317 ~~~~~~~-~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~---~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (456)
T KOG0266|consen 317 LETGSKL-CLKLLSGAENSAPVTSVQFSPNGKYLLSAS---LDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGK 392 (456)
T ss_pred CCCCcee-eeecccCCCCCCceeEEEECCCCcEEEEec---CCCeEEEEEccCCcceeeecccCCcceeEecccccCCCC
Confidence 8876522 2344444444 599999999998777755 79999999999998888876543 344555678888
Q ss_pred eeeeeeeeeeecCCCeEEEEECCCCceeecccCC-CCceeEeEEcCCCCEEEEEe--CCCcEEEEecC
Q 019847 247 EILSGHGFSASGDGNKLCLWKYPNMTKVGELQSS-NSRILDLSQSPDGLTVATAG--ADETIRFWEAF 311 (335)
Q Consensus 247 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~--~dg~v~iw~~~ 311 (335)
++++| +.|+.|++||..++..+..+.+| ...+..+.++|..+++++++ .|+.+++|...
T Consensus 393 ~i~sg------~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 393 LIYSG------SEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred eEEEE------eCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 88887 78999999999999999999999 88899999999999999998 78999999765
No 24
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.1e-40 Score=253.13 Aligned_cols=274 Identities=18% Similarity=0.310 Sum_probs=243.5
Q ss_pred EEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEec
Q 019847 51 LLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDV 130 (335)
Q Consensus 51 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~ 130 (335)
...+.+|..+|+.+-|+|+-..+++++.|++|++||..++++...+++|...+..++|+. .+.++++++.|-.+++||.
T Consensus 101 ~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a-~Gk~l~tcSsDl~~~LWd~ 179 (406)
T KOG0295|consen 101 VQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDA-SGKYLATCSSDLSAKLWDF 179 (406)
T ss_pred hhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEec-CccEEEecCCccchhheeH
Confidence 345568999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred ccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecC
Q 019847 131 RVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGG 210 (335)
Q Consensus 131 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g 210 (335)
.+.....+.+.+|+..|.+++|-|.|.++++++.|.+|+.|++.+ ...+.++.+|...|.-+..+.|| .++++++
T Consensus 180 ~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~t---g~cv~t~~~h~ewvr~v~v~~DG-ti~As~s- 254 (406)
T KOG0295|consen 180 DTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDT---GYCVKTFPGHSEWVRMVRVNQDG-TIIASCS- 254 (406)
T ss_pred HHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEeccc---ceeEEeccCchHhEEEEEecCCe-eEEEecC-
Confidence 876666777889999999999999999999999999999999887 45688999999999999999999 5888877
Q ss_pred CCCCeEEEEECCCCceEEEeec-CCcEeEEEeCCCCcee----eee-----eeeeeecCCCeEEEEECCCCceeecccCC
Q 019847 211 REDGCIKIWNVQKGTCIHGIDA-KAQICGLEWNRHHKEI----LSG-----HGFSASGDGNKLCLWKYPNMTKVGELQSS 280 (335)
Q Consensus 211 ~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~-----~~~~~~~~~~~i~i~d~~~~~~~~~~~~~ 280 (335)
.|.++++|-+.++++...++. ..++.+++|.|...+- +++ ..+.+++.|++|++||+.++.++.++.+|
T Consensus 255 -~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~gh 333 (406)
T KOG0295|consen 255 -NDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGH 333 (406)
T ss_pred -CCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecc
Confidence 999999999999988777764 4578888888765431 222 23556688999999999999999999999
Q ss_pred CCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCcccccccccccee
Q 019847 281 NSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDEDSVSHLAGLVSLKT 331 (335)
Q Consensus 281 ~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~i~~~~~ 331 (335)
...|..++|+|.|+||+++.+|+++++||+...+.......|..-+.++.+
T Consensus 334 dnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDf 384 (406)
T KOG0295|consen 334 DNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDF 384 (406)
T ss_pred cceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEec
Confidence 999999999999999999999999999999999988877777776666655
No 25
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.9e-38 Score=236.72 Aligned_cols=280 Identities=17% Similarity=0.311 Sum_probs=240.7
Q ss_pred ccccceeeeecCC--ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCcee
Q 019847 15 EDYYSKVIDWGRN--NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKL 92 (335)
Q Consensus 15 ~~~~~~~~~~~~~--~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 92 (335)
+...+..+.|+|+ .+++++.|..|.+|++.. .+.....+.+|.++|..+.|.+|++.+++++.|.+++.||+++|+.
T Consensus 46 h~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~g-dceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~ 124 (338)
T KOG0265|consen 46 HKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYG-DCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKR 124 (338)
T ss_pred CcceEEEEEECCCCCeEeecCCcceEEEEeccc-cccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEeccccee
Confidence 4566777888884 467778999999999643 3445667789999999999999999999999999999999999999
Q ss_pred EeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEE
Q 019847 93 VRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWE 172 (335)
Q Consensus 93 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd 172 (335)
.+.++.|...+..+.-+.....++.+++.|+++++||++.... .+.+ ...-+++++.|..++..+.+|+-|+.|++||
T Consensus 125 ~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~-~~t~-~~kyqltAv~f~d~s~qv~sggIdn~ikvWd 202 (338)
T KOG0265|consen 125 IRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEA-IKTF-ENKYQLTAVGFKDTSDQVISGGIDNDIKVWD 202 (338)
T ss_pred eehhccccceeeecCccccCCeEEEecCCCceEEEEeecccch-hhcc-ccceeEEEEEecccccceeeccccCceeeec
Confidence 9999999999999996665667888999999999999996654 3322 3456799999999999999999999999999
Q ss_pred ccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCC----ceEEEeecC-----CcEeEEEeCC
Q 019847 173 RSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKG----TCIHGIDAK-----AQICGLEWNR 243 (335)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~----~~~~~~~~~-----~~~~~~~~~~ 243 (335)
++.. ..+..+.+|..+|+.+..+|+|.+++.-+ .|.++++||++.. +++..+..+ .....+.|+|
T Consensus 203 ~r~~---d~~~~lsGh~DtIt~lsls~~gs~llsns---Md~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp 276 (338)
T KOG0265|consen 203 LRKN---DGLYTLSGHADTITGLSLSRYGSFLLSNS---MDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSP 276 (338)
T ss_pred cccC---cceEEeecccCceeeEEeccCCCcccccc---ccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccC
Confidence 8864 45888899999999999999998777754 8999999999753 446666543 2467789999
Q ss_pred CCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEe
Q 019847 244 HHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWE 309 (335)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~ 309 (335)
++..+.+| +.|..+++||......+..+.+|.+.|.+++|+|...+|.+++.|.+|++=+
T Consensus 277 ~~~~i~ag------s~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 277 NGTKITAG------SADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred CCCccccc------cccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 99999887 6799999999999999999999999999999999999999999999998743
No 26
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.7e-39 Score=269.86 Aligned_cols=242 Identities=25% Similarity=0.413 Sum_probs=212.1
Q ss_pred ccccceeeeecCC-ceEEEe-cCCeEEEEEecCCce-----------------------------eeEEeecCCCCCceE
Q 019847 15 EDYYSKVIDWGRN-NVLAVA-LGPVLFLWKWENGKV-----------------------------KKLLQVPGEDDYPTS 63 (335)
Q Consensus 15 ~~~~~~~~~~~~~-~~~~~~-~~~~i~vw~~~~~~~-----------------------------~~~~~~~~~~~~v~~ 63 (335)
....++|..++++ .++|++ .|..|++|.+...++ .....+-+|.++|+.
T Consensus 377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg 456 (707)
T KOG0263|consen 377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYG 456 (707)
T ss_pred cCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceee
Confidence 3456788889885 555554 789999999874221 112335689999999
Q ss_pred EEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecC
Q 019847 64 VSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAH 143 (335)
Q Consensus 64 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~ 143 (335)
+.|+|+.++|++++.|+++|+|.+.+...+-.+++|..+|+.+.|+| .|.+|++++.|++-++|...... +.+.+.+|
T Consensus 457 ~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P-~GyYFatas~D~tArLWs~d~~~-PlRifagh 534 (707)
T KOG0263|consen 457 CSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAP-RGYYFATASHDQTARLWSTDHNK-PLRIFAGH 534 (707)
T ss_pred eeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecC-CceEEEecCCCceeeeeecccCC-chhhhccc
Confidence 99999999999999999999999999999999999999999999999 99999999999999999998644 57888999
Q ss_pred CCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCC
Q 019847 144 SGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQK 223 (335)
Q Consensus 144 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~ 223 (335)
.+.|.|+.|+|+.+|+++||.|.++|+||+.++ ..++.|.+|.++|.+++|+|+|. .+++|+ .||.|.+||+.+
T Consensus 535 lsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G---~~VRiF~GH~~~V~al~~Sp~Gr-~LaSg~--ed~~I~iWDl~~ 608 (707)
T KOG0263|consen 535 LSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTG---NSVRIFTGHKGPVTALAFSPCGR-YLASGD--EDGLIKIWDLAN 608 (707)
T ss_pred ccccceEEECCcccccccCCCCceEEEEEcCCC---cEEEEecCCCCceEEEEEcCCCc-eEeecc--cCCcEEEEEcCC
Confidence 999999999999999999999999999998875 45888899999999999999996 556655 999999999999
Q ss_pred CceEEEeec-CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCC
Q 019847 224 GTCIHGIDA-KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPN 270 (335)
Q Consensus 224 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~ 270 (335)
++.+..+.. .+.+.++.|+.+|..+++| +.|++|++||+..
T Consensus 609 ~~~v~~l~~Ht~ti~SlsFS~dg~vLasg------g~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 609 GSLVKQLKGHTGTIYSLSFSRDGNVLASG------GADNSVRLWDLTK 650 (707)
T ss_pred CcchhhhhcccCceeEEEEecCCCEEEec------CCCCeEEEEEchh
Confidence 999887765 4679999999999999988 7799999999865
No 27
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.6e-37 Score=258.05 Aligned_cols=302 Identities=20% Similarity=0.404 Sum_probs=256.8
Q ss_pred cceeeeecC--CceEEEecCCeEEEEEecC-----------------------Cce---------eeEEeecCCCCCceE
Q 019847 18 YSKVIDWGR--NNVLAVALGPVLFLWKWEN-----------------------GKV---------KKLLQVPGEDDYPTS 63 (335)
Q Consensus 18 ~~~~~~~~~--~~~~~~~~~~~i~vw~~~~-----------------------~~~---------~~~~~~~~~~~~v~~ 63 (335)
++.+.-|.. ..+++++.||.+.+|.... ++. .+..-+......|++
T Consensus 191 ~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvta 270 (893)
T KOG0291|consen 191 YVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTA 270 (893)
T ss_pred ceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceee
Confidence 344444444 4799999999999998861 110 001112223478999
Q ss_pred EEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCC-CcEEEEecccCCeeeEEeec
Q 019847 64 VSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKD-KSIINHDVRVSNNVTSCIKA 142 (335)
Q Consensus 64 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~i~~~d~~~~~~~~~~~~~ 142 (335)
.+|++..+.|++|-..|...+|++....+++.+.-...+|..+.|+. .|+.|+.|+.. |.+.+|+.....- +...++
T Consensus 271 a~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~-tGDWiA~g~~klgQLlVweWqsEsY-VlKQQg 348 (893)
T KOG0291|consen 271 AAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNS-TGDWIAFGCSKLGQLLVWEWQSESY-VLKQQG 348 (893)
T ss_pred eeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecc-cCCEEEEcCCccceEEEEEeeccce-eeeccc
Confidence 99999999999999999999999999999999998889999999998 89999888754 8999999986554 555789
Q ss_pred CCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECC
Q 019847 143 HSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQ 222 (335)
Q Consensus 143 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~ 222 (335)
|...+++++++|||+++|+|++||+|++||... ..++.++..|.+.|+.+.|+..+..+++++ .||+|+.||+.
T Consensus 349 H~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~S---gfC~vTFteHts~Vt~v~f~~~g~~llssS---LDGtVRAwDlk 422 (893)
T KOG0291|consen 349 HSDRITSLAYSPDGQLIATGAEDGKVKVWNTQS---GFCFVTFTEHTSGVTAVQFTARGNVLLSSS---LDGTVRAWDLK 422 (893)
T ss_pred cccceeeEEECCCCcEEEeccCCCcEEEEeccC---ceEEEEeccCCCceEEEEEEecCCEEEEee---cCCeEEeeeec
Confidence 999999999999999999999999999999765 567999999999999999999997665554 89999999999
Q ss_pred CCceEEEeecCCc--EeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEe
Q 019847 223 KGTCIHGIDAKAQ--ICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAG 300 (335)
Q Consensus 223 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 300 (335)
..+..+++..+.+ ..+++..|.|..+.+|. -+.-.|.+|++++|+.+-.+.+|+++|.+++|+|++..|++++
T Consensus 423 RYrNfRTft~P~p~QfscvavD~sGelV~AG~-----~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~S 497 (893)
T KOG0291|consen 423 RYRNFRTFTSPEPIQFSCVAVDPSGELVCAGA-----QDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGS 497 (893)
T ss_pred ccceeeeecCCCceeeeEEEEcCCCCEEEeec-----cceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEecc
Confidence 9999999987664 67899999999998873 3456799999999999999999999999999999999999999
Q ss_pred CCCcEEEEecCCCCCCCCccccccccccceec
Q 019847 301 ADETIRFWEAFGPSGDEDSVSHLAGLVSLKTS 332 (335)
Q Consensus 301 ~dg~v~iw~~~~~~~~~~~~~~~~~i~~~~~~ 332 (335)
.|.+|++|++.......+...+...+.+++|.
T Consensus 498 WDkTVRiW~if~s~~~vEtl~i~sdvl~vsfr 529 (893)
T KOG0291|consen 498 WDKTVRIWDIFSSSGTVETLEIRSDVLAVSFR 529 (893)
T ss_pred ccceEEEEEeeccCceeeeEeeccceeEEEEc
Confidence 99999999999988777777777777777764
No 28
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=5.3e-40 Score=254.49 Aligned_cols=260 Identities=21% Similarity=0.398 Sum_probs=225.9
Q ss_pred CCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeee
Q 019847 58 DDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVT 137 (335)
Q Consensus 58 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~ 137 (335)
...|..+.|.|+|+.|++|+..|.+.+|+..+-.....++.|..+|+++.|++ ++..+++|+.+|.|++|+..... +.
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~-~g~wmiSgD~gG~iKyWqpnmnn-Vk 173 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSH-NGTWMISGDKGGMIKYWQPNMNN-VK 173 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEcc-CCCEEEEcCCCceEEecccchhh-hH
Confidence 45789999999999999999999999999866665566788999999999999 99999999999999999987433 23
Q ss_pred EEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEE
Q 019847 138 SCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIK 217 (335)
Q Consensus 138 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~ 217 (335)
.....|...|++++|+|+...|++++.||+|+|||.... +....+.+|.-.|.++.|+|.. .++++++ .|+.|+
T Consensus 174 ~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~---kee~vL~GHgwdVksvdWHP~k-gLiasgs--kDnlVK 247 (464)
T KOG0284|consen 174 IIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMP---KEERVLRGHGWDVKSVDWHPTK-GLIASGS--KDNLVK 247 (464)
T ss_pred HhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCC---chhheeccCCCCcceeccCCcc-ceeEEcc--CCceeE
Confidence 333345589999999999999999999999999997764 3445568899999999999987 4777776 899999
Q ss_pred EEECCCCceEEEeec-CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCC-CCE
Q 019847 218 IWNVQKGTCIHGIDA-KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPD-GLT 295 (335)
Q Consensus 218 i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~ 295 (335)
+||.++++++.++.. ...|..+.|+|++++|+++ +.|..+++||+++.+.+..+++|...+++++|+|- ..+
T Consensus 248 lWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~------skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~l 321 (464)
T KOG0284|consen 248 LWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTG------SKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESL 321 (464)
T ss_pred eecCCCcchhhhhhhccceEEEEEEcCCCCeeEEc------cCCceEEEEehhHhHHHHHhhcchhhheeeccccccccc
Confidence 999999999988865 4679999999999999988 88999999999999999999999999999999994 568
Q ss_pred EEEEeCCCcEEEEecCCC-CCCCCcccccccccccee
Q 019847 296 VATAGADETIRFWEAFGP-SGDEDSVSHLAGLVSLKT 331 (335)
Q Consensus 296 l~~~~~dg~v~iw~~~~~-~~~~~~~~~~~~i~~~~~ 331 (335)
|.+|+.||.|..|.+... +.......|...|.+++.
T Consensus 322 ftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~ 358 (464)
T KOG0284|consen 322 FTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAY 358 (464)
T ss_pred eeeccCCCceEEEeccccccccCCCcccccceeeeec
Confidence 889999999999999944 444455688888988865
No 29
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=6.1e-38 Score=266.95 Aligned_cols=262 Identities=27% Similarity=0.500 Sum_probs=231.3
Q ss_pred CCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCce--eEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCC
Q 019847 57 EDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSK--LVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSN 134 (335)
Q Consensus 57 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~ 134 (335)
+...|.++.|+|+|+++++++.++.+++|+..+.+ ....+.+|...|..++|+| ++.++++++.|+++++||+....
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~-d~~~l~s~s~D~tiriwd~~~~~ 236 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSP-DGSYLLSGSDDKTLRIWDLKDDG 236 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECC-CCcEEEEecCCceEEEeeccCCC
Confidence 47889999999999999999999999999998777 7777889999999999999 99999999999999999996666
Q ss_pred eeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCC
Q 019847 135 NVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDG 214 (335)
Q Consensus 135 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~ 214 (335)
...+.+.+|...|++++|+|+++++++|+.|++|++||+++ .+....+.+|.++|++++|++++..+++ ++ .|+
T Consensus 237 ~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~---~~~~~~l~~hs~~is~~~f~~d~~~l~s-~s--~d~ 310 (456)
T KOG0266|consen 237 RNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRT---GECVRKLKGHSDGISGLAFSPDGNLLVS-AS--YDG 310 (456)
T ss_pred eEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccC---CeEEEeeeccCCceEEEEECCCCCEEEE-cC--CCc
Confidence 77888999999999999999999999999999999999887 5678889999999999999999965555 44 799
Q ss_pred eEEEEECCCCc--eEEEeecC--C-cEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCc---eeE
Q 019847 215 CIKIWNVQKGT--CIHGIDAK--A-QICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSR---ILD 286 (335)
Q Consensus 215 ~i~i~d~~~~~--~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~---i~~ 286 (335)
.|++||+.++. ++..+... . ++.++.|+|++++++++ ..|+.+++||+..+..+..+.+|... +.+
T Consensus 311 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~------~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~ 384 (456)
T KOG0266|consen 311 TIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSA------SLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFS 384 (456)
T ss_pred cEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEe------cCCCeEEEEEccCCcceeeecccCCcceeEec
Confidence 99999999999 44555432 2 58999999999999988 67999999999999999999988774 444
Q ss_pred eEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCcccc-cccccccee
Q 019847 287 LSQSPDGLTVATAGADETIRFWEAFGPSGDEDSVSH-LAGLVSLKT 331 (335)
Q Consensus 287 ~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~-~~~i~~~~~ 331 (335)
...++.+.++++|+.|+.|++|++..........+| ...+..+.+
T Consensus 385 ~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~ 430 (456)
T KOG0266|consen 385 PTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSS 430 (456)
T ss_pred ccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceecccc
Confidence 556789999999999999999999998888888888 666655544
No 30
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2e-38 Score=242.14 Aligned_cols=248 Identities=22% Similarity=0.399 Sum_probs=225.7
Q ss_pred ecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccC
Q 019847 54 VPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVS 133 (335)
Q Consensus 54 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~ 133 (335)
+.+|.+.|.|+++.|..+++++|+.|++|+|||+.++++..++.+|...|..+++++ ...++++++.|+.|+.||++..
T Consensus 147 i~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~-rHpYlFs~gedk~VKCwDLe~n 225 (460)
T KOG0285|consen 147 ISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSK-RHPYLFSAGEDKQVKCWDLEYN 225 (460)
T ss_pred hhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecc-cCceEEEecCCCeeEEEechhh
Confidence 468999999999999999999999999999999999999999999999999999999 8899999999999999999954
Q ss_pred CeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCC
Q 019847 134 NNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGRED 213 (335)
Q Consensus 134 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d 213 (335)
+ +++.+.+|-..|.+++.+|.-..|++|+.|.++++||+++ ...+..+.+|..+|.++.+.|.++.++..+ .|
T Consensus 226 k-vIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRt---r~~V~~l~GH~~~V~~V~~~~~dpqvit~S---~D 298 (460)
T KOG0285|consen 226 K-VIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRT---RASVHVLSGHTNPVASVMCQPTDPQVITGS---HD 298 (460)
T ss_pred h-hHHHhccccceeEEEeccccceeEEecCCcceEEEeeecc---cceEEEecCCCCcceeEEeecCCCceEEec---CC
Confidence 4 5777889999999999999989999999999999999987 456889999999999999999888766633 89
Q ss_pred CeEEEEECCCCceEEEeecC-CcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCC
Q 019847 214 GCIKIWNVQKGTCIHGIDAK-AQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPD 292 (335)
Q Consensus 214 ~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~ 292 (335)
++|++||++.|+....+.++ ..+.+++.+|....++++ ....|+-|++..+..++.+.+|..-|++++...|
T Consensus 299 ~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASa-------s~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD 371 (460)
T KOG0285|consen 299 STVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASA-------SPDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSD 371 (460)
T ss_pred ceEEEeeeccCceeEeeecccceeeEEecCCchhhhhcc-------CCccceeccCCccchhhccccccceeeeeeeccC
Confidence 99999999999998888765 579999999999888775 3678999999999999999999999999999988
Q ss_pred CCEEEEEeCCCcEEEEecCCCCCCC
Q 019847 293 GLTVATAGADETIRFWEAFGPSGDE 317 (335)
Q Consensus 293 ~~~l~~~~~dg~v~iw~~~~~~~~~ 317 (335)
| ++++|+++|.+.+||..++..-+
T Consensus 372 ~-v~~~G~dng~~~fwdwksg~nyQ 395 (460)
T KOG0285|consen 372 G-VLVSGGDNGSIMFWDWKSGHNYQ 395 (460)
T ss_pred c-eEEEcCCceEEEEEecCcCcccc
Confidence 7 78899999999999999875544
No 31
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.1e-38 Score=228.00 Aligned_cols=260 Identities=17% Similarity=0.278 Sum_probs=228.9
Q ss_pred EEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEec
Q 019847 51 LLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDV 130 (335)
Q Consensus 51 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~ 130 (335)
...+..++++|..+.|+-+|+|.++++.|.+|++|+...+.+++++.+|...|..++.+. ++..|++|+.|..+.+||+
T Consensus 10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~-Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSS-DNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccc-cccccccCCCCceEEEEEc
Confidence 344568899999999999999999999999999999999999999999999999999988 9999999999999999999
Q ss_pred ccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecC
Q 019847 131 RVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGG 210 (335)
Q Consensus 131 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g 210 (335)
++++. .+.+.+|.+.|+.++|+.+...+++|+.|.++++||.+.. ..++++.+......|.++.... ..+++|+
T Consensus 89 ~TGkv-~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~-s~ePiQildea~D~V~Si~v~~---heIvaGS- 162 (307)
T KOG0316|consen 89 NTGKV-DRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSR-SFEPIQILDEAKDGVSSIDVAE---HEIVAGS- 162 (307)
T ss_pred ccCee-eeecccccceeeEEEecCcceEEEeccccceeEEEEcccC-CCCccchhhhhcCceeEEEecc---cEEEeec-
Confidence 97765 6778999999999999999999999999999999999964 4678888888889999999875 3556655
Q ss_pred CCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCce--eEeE
Q 019847 211 REDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRI--LDLS 288 (335)
Q Consensus 211 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i--~~~~ 288 (335)
.||+++.||++.|+....+ ...+|+++.|+++++..+++ +-|+.+++.|-.+++.++.+++|...- ...+
T Consensus 163 -~DGtvRtydiR~G~l~sDy-~g~pit~vs~s~d~nc~La~------~l~stlrLlDk~tGklL~sYkGhkn~eykldc~ 234 (307)
T KOG0316|consen 163 -VDGTVRTYDIRKGTLSSDY-FGHPITSVSFSKDGNCSLAS------SLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCC 234 (307)
T ss_pred -cCCcEEEEEeecceeehhh-cCCcceeEEecCCCCEEEEe------eccceeeecccchhHHHHHhcccccceeeeeee
Confidence 9999999999999875443 46789999999999999887 669999999999999999999998743 4456
Q ss_pred EcCCCCEEEEEeCCCcEEEEecCCCCCCCCccccccc
Q 019847 289 QSPDGLTVATAGADETIRFWEAFGPSGDEDSVSHLAG 325 (335)
Q Consensus 289 ~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~ 325 (335)
++.....+++|++||.|++||+.......+...+...
T Consensus 235 l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v 271 (307)
T KOG0316|consen 235 LNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTV 271 (307)
T ss_pred ecccceeEEeccCCceEEEEEeccceeeeeeccCCce
Confidence 7777889999999999999999998877766555444
No 32
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.3e-39 Score=247.95 Aligned_cols=273 Identities=17% Similarity=0.410 Sum_probs=233.8
Q ss_pred ccceeeeecCCceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeee
Q 019847 17 YYSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNL 96 (335)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 96 (335)
-.+.|+.+.++.++++..|++|+|||.++..+. ..+.||++.|.|+.| +.+.+++|+.|.+|++||+++++++..+
T Consensus 198 kgVYClQYDD~kiVSGlrDnTikiWD~n~~~c~--~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~l~tl 273 (499)
T KOG0281|consen 198 KGVYCLQYDDEKIVSGLRDNTIKIWDKNSLECL--KILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEPLNTL 273 (499)
T ss_pred CceEEEEecchhhhcccccCceEEeccccHHHH--HhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCchhhHH
Confidence 346789999999999999999999999887764 456799999999999 5669999999999999999999999999
Q ss_pred cccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCe--eeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEcc
Q 019847 97 EGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNN--VTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERS 174 (335)
Q Consensus 97 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 174 (335)
-.|...|..+.| ++.++++++.|.++.+||+..... +...+.+|...|+.+.|+. +++++++.|.+|++|++.
T Consensus 274 ihHceaVLhlrf---~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--kyIVsASgDRTikvW~~s 348 (499)
T KOG0281|consen 274 IHHCEAVLHLRF---SNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWSTS 348 (499)
T ss_pred hhhcceeEEEEE---eCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--ceEEEecCCceEEEEecc
Confidence 999999999999 568999999999999999976543 3456789999999999864 599999999999999977
Q ss_pred CCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCC-cEeEEEeCCCCceeeeeee
Q 019847 175 KMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKA-QICGLEWNRHHKEILSGHG 253 (335)
Q Consensus 175 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 253 (335)
+ ...+.++.+|...|-|+.+. ..++++|+ .|.+|++||++.|.+++.++++. -+.++.|. .+.+++|
T Consensus 349 t---~efvRtl~gHkRGIAClQYr---~rlvVSGS--SDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSG-- 416 (499)
T KOG0281|consen 349 T---CEFVRTLNGHKRGIACLQYR---DRLVVSGS--SDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSG-- 416 (499)
T ss_pred c---eeeehhhhcccccceehhcc---CeEEEecC--CCceEEEEeccccHHHHHHhchHHhhhheeec--Cceeeec--
Confidence 6 45688889999999888764 36888876 99999999999999999998865 57888884 5667777
Q ss_pred eeeecCCCeEEEEECCCCce---------eecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCC
Q 019847 254 FSASGDGNKLCLWKYPNMTK---------VGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGD 316 (335)
Q Consensus 254 ~~~~~~~~~i~i~d~~~~~~---------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~ 316 (335)
+-||.|++||+..+.. +.++..|.+.|..+.| |...+++++.|.+|.|||+.++...
T Consensus 417 ----aYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 417 ----AYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred ----cccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCCCcc
Confidence 5699999999987543 3445678999999999 4558999999999999999887554
No 33
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=3.7e-39 Score=234.82 Aligned_cols=285 Identities=18% Similarity=0.294 Sum_probs=253.1
Q ss_pred cccccceeeeecC----C-ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCC
Q 019847 14 MEDYYSKVIDWGR----N-NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAE 88 (335)
Q Consensus 14 ~~~~~~~~~~~~~----~-~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~ 88 (335)
.+..++.-++|++ + .+++++.|+.-.+-+-++|..+ -++.+|.+.|....++.+....|+++.|-+-++||.-
T Consensus 12 ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwi--gtfeghkgavw~~~l~~na~~aasaaadftakvw~a~ 89 (334)
T KOG0278|consen 12 GHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWI--GTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAV 89 (334)
T ss_pred CCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcE--EeeeccCcceeeeecCchhhhhhhhcccchhhhhhhh
Confidence 3456677788876 2 3667788999999998899874 4567999999999999999899999999999999999
Q ss_pred CceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeE
Q 019847 89 TSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVV 168 (335)
Q Consensus 89 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 168 (335)
+|..+..+. |..-|.+++|+. +.+.|++|+.+..+++||++..+.....+.+|.+.|..+.|....+.+++++.|++|
T Consensus 90 tgdelhsf~-hkhivk~~af~~-ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tV 167 (334)
T KOG0278|consen 90 TGDELHSFE-HKHIVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTV 167 (334)
T ss_pred hhhhhhhhh-hhheeeeEEecc-cchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCce
Confidence 999999987 889999999999 999999999999999999998887788889999999999999988999999999999
Q ss_pred EEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCcee
Q 019847 169 RIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEI 248 (335)
Q Consensus 169 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (335)
|+||.+++.. ++.+. .+.+|+++..+++|. +++++ ..+.|.+||..+...++.++.+..|.+...+|+...+
T Consensus 168 RLWD~rTgt~---v~sL~-~~s~VtSlEvs~dG~-ilTia---~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~f 239 (334)
T KOG0278|consen 168 RLWDHRTGTE---VQSLE-FNSPVTSLEVSQDGR-ILTIA---YGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFF 239 (334)
T ss_pred EEEEeccCcE---EEEEe-cCCCCcceeeccCCC-EEEEe---cCceeEEeccccccceeeccCccccccccccCCCceE
Confidence 9999998654 44433 467899999999996 55555 5789999999999999999999999999999999888
Q ss_pred eeeeeeeeecCCCeEEEEECCCCceeecc-cCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCC
Q 019847 249 LSGHGFSASGDGNKLCLWKYPNMTKVGEL-QSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGD 316 (335)
Q Consensus 249 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~ 316 (335)
++| ++|..++.||+.+++.+..+ ++|.++|.++.|+|+|...++|++||+|++|.....+..
T Consensus 240 VaG------ged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 240 VAG------GEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred Eec------CcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 877 89999999999999999886 899999999999999999999999999999998876654
No 34
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=5.4e-39 Score=253.94 Aligned_cols=280 Identities=21% Similarity=0.367 Sum_probs=236.2
Q ss_pred ccccceeeeecCC---ceEEEecCCeEEEEEecC-CceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCc
Q 019847 15 EDYYSKVIDWGRN---NVLAVALGPVLFLWKWEN-GKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETS 90 (335)
Q Consensus 15 ~~~~~~~~~~~~~---~~~~~~~~~~i~vw~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 90 (335)
+.--++++.|-+. .+++++.|+.|+||++-. ++ .+.++.+|..+|..++|+++|..+++++.|+.|++||+++|
T Consensus 213 H~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~--~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG 290 (503)
T KOG0282|consen 213 HTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRR--CLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETG 290 (503)
T ss_pred CccccchhhhccceeeEEEecCCCceEEEEEEecCcc--eehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccc
Confidence 4456778888872 466778999999999876 44 45677899999999999999999999999999999999999
Q ss_pred eeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEE
Q 019847 91 KLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRI 170 (335)
Q Consensus 91 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 170 (335)
+++..+. ....++++.|.|.+.+.|++|+.|+.|+.||+++++ +++.+..|-+.|..+.|-++++.+++.+.|++++|
T Consensus 291 ~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k-vvqeYd~hLg~i~~i~F~~~g~rFissSDdks~ri 368 (503)
T KOG0282|consen 291 QVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK-VVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRI 368 (503)
T ss_pred eEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchH-HHHHHHhhhhheeeeEEccCCceEeeeccCccEEE
Confidence 9999987 567899999999666999999999999999999766 57777889999999999999999999999999999
Q ss_pred EEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceE---EEee---cCCcEeEEEeCCC
Q 019847 171 WERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCI---HGID---AKAQICGLEWNRH 244 (335)
Q Consensus 171 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~---~~~~---~~~~~~~~~~~~~ 244 (335)
|+.+.+...+.+.....| ...++..+|+++.+++- + .|+.|.++.+...-.+ ..++ ..+-...+.|||+
T Consensus 369 We~~~~v~ik~i~~~~~h--smP~~~~~P~~~~~~aQ-s--~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpD 443 (503)
T KOG0282|consen 369 WENRIPVPIKNIADPEMH--TMPCLTLHPNGKWFAAQ-S--MDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPD 443 (503)
T ss_pred EEcCCCccchhhcchhhc--cCcceecCCCCCeehhh-c--cCceEEEEecccccccCHhhhhcceeccCceeeEEEcCC
Confidence 998876554444443333 46689999999755553 3 8999999986543221 2222 2456788999999
Q ss_pred CceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCC-CEEEEEeCCCcEEEEe
Q 019847 245 HKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDG-LTVATAGADETIRFWE 309 (335)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~v~iw~ 309 (335)
|.+|++| ..+|.+.+||.++-+.+..+++|.+++..+.|+|.. ..+|+++.||.|++|+
T Consensus 444 G~~l~SG------dsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 444 GRTLCSG------DSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred CCeEEee------cCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 9999998 679999999999999999999999999999999964 6799999999999996
No 35
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.3e-38 Score=255.79 Aligned_cols=261 Identities=16% Similarity=0.294 Sum_probs=237.5
Q ss_pred ecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccC
Q 019847 54 VPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVS 133 (335)
Q Consensus 54 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~ 133 (335)
+..+...|.++.|+|....++++-.+|.|.|||.++...++.+.....+|++..|.+ ..+.+++|+.|..|++|+.++.
T Consensus 9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfia-RknWiv~GsDD~~IrVfnynt~ 87 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIA-RKNWIVTGSDDMQIRVFNYNTG 87 (794)
T ss_pred hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeee-ccceEEEecCCceEEEEecccc
Confidence 445789999999999999999999999999999999999999999999999999999 9999999999999999999988
Q ss_pred CeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCC
Q 019847 134 NNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGRED 213 (335)
Q Consensus 134 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d 213 (335)
++ +..+..|...|++++.+|...++++++.|-.|++||.+.. ..+.+++.+|...|.+++|+|....-+++++ .|
T Consensus 88 ek-V~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~--wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~s--LD 162 (794)
T KOG0276|consen 88 EK-VKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENE--WACEQTFEGHEHYVMQVAFNPKDPNTFASAS--LD 162 (794)
T ss_pred ee-eEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCc--eeeeeEEcCcceEEEEEEecCCCccceeeee--cc
Confidence 76 6668999999999999999999999999999999998763 6788999999999999999999999999988 99
Q ss_pred CeEEEEECCCCceEEEeecC-CcEeEEEeCCCC--ceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEc
Q 019847 214 GCIKIWNVQKGTCIHGIDAK-AQICGLEWNRHH--KEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQS 290 (335)
Q Consensus 214 ~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~ 290 (335)
++|++|.+.+..+..+++.+ ..++++.+-+.| .++++| ++|..++|||..+.++++++.+|...|..+.|+
T Consensus 163 rTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsg------aDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fh 236 (794)
T KOG0276|consen 163 RTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISG------ADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFH 236 (794)
T ss_pred ccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEec------CCCceEEEeecchHHHHHHhhcccccceEEEec
Confidence 99999999999999999875 479999998876 577777 889999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEecCCCCCCCCcccccccc
Q 019847 291 PDGLTVATAGADETIRFWEAFGPSGDEDSVSHLAGL 326 (335)
Q Consensus 291 ~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~i 326 (335)
|.-.++++|++||+++||+..+-+.+..+.-....+
T Consensus 237 p~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRv 272 (794)
T KOG0276|consen 237 PELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERV 272 (794)
T ss_pred CCCcEEEEecCCccEEEecCcceehhhhhhcCCceE
Confidence 999999999999999999988766655443333333
No 36
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.8e-36 Score=241.02 Aligned_cols=308 Identities=18% Similarity=0.294 Sum_probs=248.7
Q ss_pred CcccccceeeeecCCceEEEe--cCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEEC--CCcEEEEeCC
Q 019847 13 LMEDYYSKVIDWGRNNVLAVA--LGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYM--DSKLQLWDAE 88 (335)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~--~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iw~~~ 88 (335)
.-+...++...++|..+..++ ..|+|+|||....+.....+++.-.++|..++|++++++|++.+. +.-.+++-.+
T Consensus 56 tEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~D 135 (603)
T KOG0318|consen 56 TEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWD 135 (603)
T ss_pred ccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEec
Confidence 345666777888987555555 458999999876555555566667889999999999999988763 2233344444
Q ss_pred CceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeE
Q 019847 89 TSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVV 168 (335)
Q Consensus 89 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 168 (335)
+|..+.++.+|...|.++.|-|..+-.+++|+.|+.|.+|+=. .-+.......|..-|.++.|+|||.++|+++.||++
T Consensus 136 SG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGP-PFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki 214 (603)
T KOG0318|consen 136 SGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGP-PFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKI 214 (603)
T ss_pred CCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCC-CeeeeecccccccceeeEEECCCCCeEEEecCCccE
Confidence 7888999999999999999999888999999999999999855 344566778899999999999999999999999999
Q ss_pred EEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCc----EeEEEeCCC
Q 019847 169 RIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQ----ICGLEWNRH 244 (335)
Q Consensus 169 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~----~~~~~~~~~ 244 (335)
.+||-.+++....+..-.+|.+.|.+++|+||+..+++++ .|.+++|||+.+.++++++..... ...+.|.
T Consensus 215 ~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~S---aDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq-- 289 (603)
T KOG0318|consen 215 YIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVS---ADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ-- 289 (603)
T ss_pred EEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEec---CCceEEEEEeeccceEEEeecCCchhceEEEEEEe--
Confidence 9999665544333333448999999999999998888776 599999999999999999976543 4455565
Q ss_pred CceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCC-ccccc
Q 019847 245 HKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDED-SVSHL 323 (335)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~-~~~~~ 323 (335)
...+++- +.+|.|.+++.....++..+.+|...|++++.+||+.+|++|+.||.|.-|+...+..... ...|.
T Consensus 290 kd~lItV------Sl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~ 363 (603)
T KOG0318|consen 290 KDHLITV------SLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHT 363 (603)
T ss_pred CCeEEEE------EcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccccccccccc
Confidence 3334443 5599999999999999999999999999999999999999999999999999998765543 25677
Q ss_pred cccccceec
Q 019847 324 AGLVSLKTS 332 (335)
Q Consensus 324 ~~i~~~~~~ 332 (335)
..|.++...
T Consensus 364 nqI~~~~~~ 372 (603)
T KOG0318|consen 364 NQIKGMAAS 372 (603)
T ss_pred ceEEEEeec
Confidence 777666543
No 37
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.2e-37 Score=252.25 Aligned_cols=278 Identities=16% Similarity=0.273 Sum_probs=248.9
Q ss_pred ccccceeeeecCC--ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCcee
Q 019847 15 EDYYSKVIDWGRN--NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKL 92 (335)
Q Consensus 15 ~~~~~~~~~~~~~--~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 92 (335)
..-.+.+++++|. -++++-.+|.|.|||.++..+.+.+.. ..-+|++..|-+..+.+++|+.|..|+||+.++++.
T Consensus 12 rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV--~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ek 89 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEV--SEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEK 89 (794)
T ss_pred cCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeee--cccchhhheeeeccceEEEecCCceEEEEeccccee
Confidence 4556889999994 467777999999999999988776654 467899999999999999999999999999999999
Q ss_pred EeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeec-CCCEEEEEeCCCeEEEE
Q 019847 93 VRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSN-EGNLLASGGDDNVVRIW 171 (335)
Q Consensus 93 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iw 171 (335)
+..|..|.+-|++++.+| ...++++++.|-.|++||.+..-.+.+.+.+|...|.+++|+| |.+.+|+++-|++|++|
T Consensus 90 V~~FeAH~DyIR~iavHP-t~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVW 168 (794)
T KOG0276|consen 90 VKTFEAHSDYIRSIAVHP-TLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVW 168 (794)
T ss_pred eEEeeccccceeeeeecC-CCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEE
Confidence 999999999999999999 8899999999999999999988888999999999999999999 77899999999999999
Q ss_pred EccCCCcccceeeccCCCCCeeEEEecCCCC-cEEEEecCCCCCeEEEEECCCCceEEEeecC-CcEeEEEeCCCCceee
Q 019847 172 ERSKMSSSKSLHRFTDHCGGVKALAWSPHQV-NVLATGGGREDGCIKIWNVQKGTCIHGIDAK-AQICGLEWNRHHKEIL 249 (335)
Q Consensus 172 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 249 (335)
.+.. ..+..++.+|...|+|+.+-+.|. -.+.+|+ .|..+++||.++..+++++++| ..+..+.|+|.-..++
T Consensus 169 slgs---~~~nfTl~gHekGVN~Vdyy~~gdkpylIsga--DD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiii 243 (794)
T KOG0276|consen 169 SLGS---PHPNFTLEGHEKGVNCVDYYTGGDKPYLISGA--DDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIII 243 (794)
T ss_pred EcCC---CCCceeeeccccCcceEEeccCCCcceEEecC--CCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEE
Confidence 9776 455778889999999999987653 2444544 8999999999999999999965 5799999999999999
Q ss_pred eeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEE
Q 019847 250 SGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIR 306 (335)
Q Consensus 250 ~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~ 306 (335)
+| ++||+++||+..+.++..++.-..+++.+++-.+.++.++.|..+|.|.
T Consensus 244 sg------sEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~ 294 (794)
T KOG0276|consen 244 SG------SEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVT 294 (794)
T ss_pred Ee------cCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEE
Confidence 88 8999999999999999988888888999999999888888888777764
No 38
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2e-37 Score=256.70 Aligned_cols=281 Identities=22% Similarity=0.361 Sum_probs=243.1
Q ss_pred cceeeeecC---CceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCc----
Q 019847 18 YSKVIDWGR---NNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETS---- 90 (335)
Q Consensus 18 ~~~~~~~~~---~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~---- 90 (335)
.+..++|-+ +.+++++..+.+++|+..+..+. -+++|++.|.++....+|.+|++|+.|.++++|.++++
T Consensus 325 EI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~---ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~ 401 (775)
T KOG0319|consen 325 EILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ---IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKS 401 (775)
T ss_pred hheeeeecCCccceEEEEeCCCceEEEecCCCceE---EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchh
Confidence 344455544 56777888999999998887754 56799999999996678889999999999999987443
Q ss_pred eeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCe----ee----EEeecCCCCEEEEEeecCCCEEEEE
Q 019847 91 KLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNN----VT----SCIKAHSGEVCGLKWSNEGNLLASG 162 (335)
Q Consensus 91 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~----~~----~~~~~~~~~i~~~~~~~~~~~l~~~ 162 (335)
-++....+|...|.+++++.....+|++++.|+++++|++...+. +. .....|...|++++++|+..++|+|
T Consensus 402 ~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~ 481 (775)
T KOG0319|consen 402 LCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATG 481 (775)
T ss_pred hhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEec
Confidence 345567789999999999887788999999999999999975221 11 1235699999999999999999999
Q ss_pred eCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecC-CcEeEEEe
Q 019847 163 GDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAK-AQICGLEW 241 (335)
Q Consensus 163 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~ 241 (335)
|.|++.+||++.. ......+.+|...|.++.|+|..+ ++++++ .|++|+||.+.+..++++++++ ..|..+.|
T Consensus 482 SqDktaKiW~le~---~~l~~vLsGH~RGvw~V~Fs~~dq-~laT~S--gD~TvKIW~is~fSClkT~eGH~~aVlra~F 555 (775)
T KOG0319|consen 482 SQDKTAKIWDLEQ---LRLLGVLSGHTRGVWCVSFSKNDQ-LLATCS--GDKTVKIWSISTFSCLKTFEGHTSAVLRASF 555 (775)
T ss_pred ccccceeeecccC---ceEEEEeeCCccceEEEEeccccc-eeEecc--CCceEEEEEeccceeeeeecCccceeEeeee
Confidence 9999999999874 567889999999999999999885 667766 7999999999999999999954 57999999
Q ss_pred CCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCC
Q 019847 242 NRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGP 313 (335)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~ 313 (335)
-.+++.++++ +.||-+++|++++.+++.++..|...|.+++.+|...+++||+.||.|.+|.=.+.
T Consensus 556 ~~~~~qliS~------~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te 621 (775)
T KOG0319|consen 556 IRNGKQLISA------GADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVTE 621 (775)
T ss_pred eeCCcEEEec------cCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecCcH
Confidence 9999999988 77999999999999999999999999999999999999999999999999975543
No 39
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.6e-35 Score=269.94 Aligned_cols=281 Identities=17% Similarity=0.282 Sum_probs=225.7
Q ss_pred ccccceeeeecCC--ceEEEecCCeEEEEEecCCc----e--eeEEeecCCCCCceEEEEcC-CCCEEEEEECCCcEEEE
Q 019847 15 EDYYSKVIDWGRN--NVLAVALGPVLFLWKWENGK----V--KKLLQVPGEDDYPTSVSWSH-DAKTLAVGYMDSKLQLW 85 (335)
Q Consensus 15 ~~~~~~~~~~~~~--~~~~~~~~~~i~vw~~~~~~----~--~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw 85 (335)
+...+.+++|+++ .+++++.|+.|+||+.+... . .+...+. +...+.+++|+| ++.+|++++.||.|++|
T Consensus 482 ~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~lW 560 (793)
T PLN00181 482 SSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQVW 560 (793)
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEEEE
Confidence 4667889999974 46678899999999975421 1 1122333 346789999987 57899999999999999
Q ss_pred eCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeec-CCCEEEEEeC
Q 019847 86 DAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSN-EGNLLASGGD 164 (335)
Q Consensus 86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~ 164 (335)
|+.+++.+..+.+|...|++++|+|.++.+|++|+.||.|++||++++.. ...+. +...+.++.|++ ++.+|++|+.
T Consensus 561 d~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~-~~~~~-~~~~v~~v~~~~~~g~~latgs~ 638 (793)
T PLN00181 561 DVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS-IGTIK-TKANICCVQFPSESGRSLAFGSA 638 (793)
T ss_pred ECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE-EEEEe-cCCCeEEEEEeCCCCCEEEEEeC
Confidence 99999999999999999999999986789999999999999999987655 34444 346799999954 7999999999
Q ss_pred CCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCC------ceEEEeecC-CcEe
Q 019847 165 DNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKG------TCIHGIDAK-AQIC 237 (335)
Q Consensus 165 dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~------~~~~~~~~~-~~~~ 237 (335)
||.|++||++... ..+..+.+|...|.++.|. ++. .+++++ .|+.|++||++.+ .++..+..+ ..+.
T Consensus 639 dg~I~iwD~~~~~--~~~~~~~~h~~~V~~v~f~-~~~-~lvs~s--~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~ 712 (793)
T PLN00181 639 DHKVYYYDLRNPK--LPLCTMIGHSKTVSYVRFV-DSS-TLVSSS--TDNTLKLWDLSMSISGINETPLHSFMGHTNVKN 712 (793)
T ss_pred CCeEEEEECCCCC--ccceEecCCCCCEEEEEEe-CCC-EEEEEE--CCCEEEEEeCCCCccccCCcceEEEcCCCCCee
Confidence 9999999988642 2355667899999999997 444 455554 7999999999753 456666654 4678
Q ss_pred EEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeec-------------ccCCCCceeEeEEcCCCCEEEEEeCCCc
Q 019847 238 GLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGE-------------LQSSNSRILDLSQSPDGLTVATAGADET 304 (335)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~-------------~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 304 (335)
.+.|+|++.++++| +.|+.+++|+.....++.. ...|...|.+++|+|++..|++|+.||.
T Consensus 713 ~v~~s~~~~~lasg------s~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~ 786 (793)
T PLN00181 713 FVGLSVSDGYIATG------SETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGN 786 (793)
T ss_pred EEEEcCCCCEEEEE------eCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCc
Confidence 99999999999888 7899999999876544322 1234567999999999999999999999
Q ss_pred EEEEec
Q 019847 305 IRFWEA 310 (335)
Q Consensus 305 v~iw~~ 310 (335)
|++|++
T Consensus 787 I~i~~~ 792 (793)
T PLN00181 787 IKILEM 792 (793)
T ss_pred EEEEec
Confidence 999986
No 40
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=9.9e-39 Score=243.18 Aligned_cols=256 Identities=17% Similarity=0.361 Sum_probs=222.5
Q ss_pred CCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCee
Q 019847 57 EDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNV 136 (335)
Q Consensus 57 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~ 136 (335)
....|+|+.+ |...+++|..|.+|+|||.++..+++.+.+|.+.|.|+.| +.+.+++|+.|.+|++||.++++.
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy---d~rviisGSSDsTvrvWDv~tge~- 269 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY---DERVIVSGSSDSTVRVWDVNTGEP- 269 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec---cceEEEecCCCceEEEEeccCCch-
Confidence 3567999998 6667999999999999999999999999999999999999 667999999999999999997776
Q ss_pred eEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeE
Q 019847 137 TSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCI 216 (335)
Q Consensus 137 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i 216 (335)
...+..|...|..+.|+. .++++++.|.++.+||+..+......+.+.+|...|+.+.|+.. ++++++ .|.+|
T Consensus 270 l~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~k---yIVsAS--gDRTi 342 (499)
T KOG0281|consen 270 LNTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK---YIVSAS--GDRTI 342 (499)
T ss_pred hhHHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccc---eEEEec--CCceE
Confidence 566778999999999985 49999999999999999988776777888999999999999753 555555 69999
Q ss_pred EEEECCCCceEEEeecCC-cEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCE
Q 019847 217 KIWNVQKGTCIHGIDAKA-QICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLT 295 (335)
Q Consensus 217 ~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 295 (335)
++|++.+++.++++.++. .|.|+.+ .++++++| +.|++|++||+..|.++..+++|+.-|.++.| |.+.
T Consensus 343 kvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSG------SSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~kr 412 (499)
T KOG0281|consen 343 KVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSG------SSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKR 412 (499)
T ss_pred EEEeccceeeehhhhcccccceehhc--cCeEEEec------CCCceEEEEeccccHHHHHHhchHHhhhheee--cCce
Confidence 999999999999998754 5766664 57777777 78999999999999999999999999999999 4558
Q ss_pred EEEEeCCCcEEEEecCCCCCC---------CCccccccccccceecccC
Q 019847 296 VATAGADETIRFWEAFGPSGD---------EDSVSHLAGLVSLKTSVIR 335 (335)
Q Consensus 296 l~~~~~dg~v~iw~~~~~~~~---------~~~~~~~~~i~~~~~~~~~ 335 (335)
+++|+.||+|++||+..+... .....|.+.|..+.|..+|
T Consensus 413 IVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~fq 461 (499)
T KOG0281|consen 413 IVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQ 461 (499)
T ss_pred eeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecceE
Confidence 999999999999999886554 2346788888888887765
No 41
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.7e-37 Score=238.71 Aligned_cols=277 Identities=18% Similarity=0.284 Sum_probs=226.3
Q ss_pred eeeecC--CceEEEecCCeEEEEEecCC-ceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeec
Q 019847 21 VIDWGR--NNVLAVALGPVLFLWKWENG-KVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLE 97 (335)
Q Consensus 21 ~~~~~~--~~~~~~~~~~~i~vw~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 97 (335)
.+.|++ .++++++.|.+..+|.+... +..-..++.+|..+|..+.||||.++|++++.+..+.+||+.+|.....+.
T Consensus 229 fl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~ 308 (519)
T KOG0293|consen 229 FLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYP 308 (519)
T ss_pred EEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcc
Confidence 355555 46777889999999997643 344456778999999999999999999999999999999999999887775
Q ss_pred c-cccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecC-CCCEEEEEeecCCCEEEEEeCCCeEEEEEccC
Q 019847 98 G-HHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAH-SGEVCGLKWSNEGNLLASGGDDNVVRIWERSK 175 (335)
Q Consensus 98 ~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 175 (335)
. +...+.+++|.| ++..+++|+.|+.+..||++... .....+. ...|.+++..+||+++++...|..|++++.+.
T Consensus 309 ~~~~~S~~sc~W~p-Dg~~~V~Gs~dr~i~~wdlDgn~--~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~ 385 (519)
T KOG0293|consen 309 SGLGFSVSSCAWCP-DGFRFVTGSPDRTIIMWDLDGNI--LGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREA 385 (519)
T ss_pred cCcCCCcceeEEcc-CCceeEecCCCCcEEEecCCcch--hhcccccccceeEEEEEcCCCcEEEEEecccceeeechhh
Confidence 3 457899999999 99999999999999999997332 3333332 35699999999999999999999999999775
Q ss_pred CCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCC---cEeEEEeCCCC-ceeeee
Q 019847 176 MSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKA---QICGLEWNRHH-KEILSG 251 (335)
Q Consensus 176 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~ 251 (335)
..... +.....+|++++.+.++++.++.- .+..+++||++..+.+..+.++. -+..-+|-... .++++|
T Consensus 386 ~~dr~----lise~~~its~~iS~d~k~~LvnL---~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSG 458 (519)
T KOG0293|consen 386 RVDRG----LISEEQPITSFSISKDGKLALVNL---QDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASG 458 (519)
T ss_pred hhhhc----cccccCceeEEEEcCCCcEEEEEc---ccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEec
Confidence 33222 223557899999999998777765 69999999999888777776543 24444554443 566666
Q ss_pred eeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCC-CEEEEEeCCCcEEEEecCCC
Q 019847 252 HGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDG-LTVATAGADETIRFWEAFGP 313 (335)
Q Consensus 252 ~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~v~iw~~~~~ 313 (335)
++|+.|+||+..+++++..+.+|...|++++|+|.. .++|+||.||+||||.....
T Consensus 459 ------SED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 459 ------SEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred ------CCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 899999999999999999999999999999999954 68899999999999988765
No 42
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-36 Score=221.76 Aligned_cols=277 Identities=21% Similarity=0.374 Sum_probs=227.1
Q ss_pred eeecC---CceEEEe-------cCCeEEEEEecCC-ceeeEEeecCCCCCceEEEEcCC-CCEEEEEECCCcEEEEeCCC
Q 019847 22 IDWGR---NNVLAVA-------LGPVLFLWKWENG-KVKKLLQVPGEDDYPTSVSWSHD-AKTLAVGYMDSKLQLWDAET 89 (335)
Q Consensus 22 ~~~~~---~~~~~~~-------~~~~i~vw~~~~~-~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iw~~~~ 89 (335)
+.|+| +++++++ ..|.+.|.++..+ .+.....+ .-.+.+..++|+++ .+.+++++.||++++||+..
T Consensus 14 vqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~-d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~ 92 (311)
T KOG0277|consen 14 VQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSY-DTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTM 92 (311)
T ss_pred eEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEee-ecccceeEeeecCCCcceEEEEecCceEEEeccCC
Confidence 45555 5655553 4689999999643 33333333 34678999999995 56788899999999999653
Q ss_pred -ceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeec-CCCEEEEEeCCCe
Q 019847 90 -SKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSN-EGNLLASGGDDNV 167 (335)
Q Consensus 90 -~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~ 167 (335)
..++..++.|...|.++.|++.....+++++.|++|++|+...++. ++++.+|...|....|+| .++++++++.|+.
T Consensus 93 ~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~S-v~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~ 171 (311)
T KOG0277|consen 93 PSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNS-VQTFNGHNSCIYQAAFSPHIPNLFASASGDGT 171 (311)
T ss_pred CCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcc-eEeecCCccEEEEEecCCCCCCeEEEccCCce
Confidence 4678899999999999999998899999999999999999985554 667899999999999999 7889999999999
Q ss_pred EEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCc-eEEEeecCC-cEeEEEeCCCC
Q 019847 168 VRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGT-CIHGIDAKA-QICGLEWNRHH 245 (335)
Q Consensus 168 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~-~~~~~~~~~-~~~~~~~~~~~ 245 (335)
+++||++.+. +.+. +..|..++.++.|+..+++++++++ .|+.|+.||+++-+ ++..+..++ .|..+.|||..
T Consensus 172 l~lwdvr~~g--k~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~--vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~ 246 (311)
T KOG0277|consen 172 LRLWDVRSPG--KFMS-IEAHNSEILCCDWSKYNHNVLATGG--VDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHH 246 (311)
T ss_pred EEEEEecCCC--ceeE-EEeccceeEeecccccCCcEEEecC--CCceEEEEehhhccccceeecCCceEEEEEecCcch
Confidence 9999998763 3333 7789999999999999999999987 99999999999754 455665544 79999999998
Q ss_pred ceeeeeeeeeeecCCCeEEEEECCC-CceeecccCCCCceeEeEEcC-CCCEEEEEeCCCcEEEEec
Q 019847 246 KEILSGHGFSASGDGNKLCLWKYPN-MTKVGELQSSNSRILDLSQSP-DGLTVATAGADETIRFWEA 310 (335)
Q Consensus 246 ~~~~~~~~~~~~~~~~~i~i~d~~~-~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~iw~~ 310 (335)
..+++. ++-|-+++|||... ...+.+...|++-+..+.|++ ++.++|+.+.|+.++||+.
T Consensus 247 ~~lLaS-----asYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 247 ASLLAS-----ASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hhHhhh-----ccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 766443 36699999999874 445666778888899999998 4678999999999999984
No 43
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.1e-35 Score=241.48 Aligned_cols=266 Identities=27% Similarity=0.509 Sum_probs=230.4
Q ss_pred eecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEeccc
Q 019847 53 QVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRV 132 (335)
Q Consensus 53 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 132 (335)
.+.+|..+|++++|+|++++|++++.||.+++|++.+++....+..|...+..+.|+| +++.+++++.+|.+++||+..
T Consensus 4 ~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASA-DGTYLASGSSDKTIRLWDLET 82 (289)
T ss_pred HhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECC-CCCEEEEEcCCCeEEEEEcCc
Confidence 3458999999999999999999999999999999999888888888999999999999 788999999999999999986
Q ss_pred CCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCC
Q 019847 133 SNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGRE 212 (335)
Q Consensus 133 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~ 212 (335)
.+. ...+..|...+.++.|+|+++++++++.||.+++||+++. +....+..|...+.++.|+|++. ++++++ .
T Consensus 83 ~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~--~ 155 (289)
T cd00200 83 GEC-VRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG---KCLTTLRGHTDWVNSVAFSPDGT-FVASSS--Q 155 (289)
T ss_pred ccc-eEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCc---EEEEEeccCCCcEEEEEEcCcCC-EEEEEc--C
Confidence 543 5556788889999999999888988888999999998753 44566667888999999999964 555553 6
Q ss_pred CCeEEEEECCCCceEEEeecCC-cEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcC
Q 019847 213 DGCIKIWNVQKGTCIHGIDAKA-QICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSP 291 (335)
Q Consensus 213 d~~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~ 291 (335)
|+.+++||+++++.+..+..+. .+.++.|+|+++.++++ +.++.+++||+..++.+..+..|...+.++.|+|
T Consensus 156 ~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~------~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~ 229 (289)
T cd00200 156 DGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSS------SSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSP 229 (289)
T ss_pred CCcEEEEEccccccceeEecCccccceEEECCCcCEEEEe------cCCCcEEEEECCCCceecchhhcCCceEEEEEcC
Confidence 9999999999888888877654 89999999999888776 5599999999999999999988998999999999
Q ss_pred CCCEEEEEeCCCcEEEEecCCCCCCCCccccccccccceec
Q 019847 292 DGLTVATAGADETIRFWEAFGPSGDEDSVSHLAGLVSLKTS 332 (335)
Q Consensus 292 ~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~i~~~~~~ 332 (335)
++.++++++.||.|++|++...........|...+.++.++
T Consensus 230 ~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~ 270 (289)
T cd00200 230 DGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWS 270 (289)
T ss_pred CCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEEC
Confidence 99899888889999999999876666666777777776654
No 44
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.3e-36 Score=249.50 Aligned_cols=296 Identities=20% Similarity=0.322 Sum_probs=255.6
Q ss_pred ecCCceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEE-cCCCCEEEEEECCCcEEEEeCCCceeEeeecccccc
Q 019847 24 WGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSW-SHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRR 102 (335)
Q Consensus 24 ~~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 102 (335)
.+.+.+++++.+.++.++|.++.++.+ .+-|..+.|.+++| .|+.++||+++..+.+++|++.+..+. .+.+|...
T Consensus 291 ~~~~~~l~vtaeQnl~l~d~~~l~i~k--~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~ 367 (775)
T KOG0319|consen 291 ESMSQLLLVTAEQNLFLYDEDELTIVK--QIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEA 367 (775)
T ss_pred cccCceEEEEccceEEEEEccccEEeh--hhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhh
Confidence 344689999999999999988887644 44577888999987 467889999999999999998887765 78899999
Q ss_pred eeEeeecCCCCCEEEEeeCCCcEEEEecccCCe---eeEEeecCCCCEEEEEeecC-CCEEEEEeCCCeEEEEEccCCCc
Q 019847 103 VATSSWNHWNGHILTSGSKDKSIINHDVRVSNN---VTSCIKAHSGEVCGLKWSNE-GNLLASGGDDNVVRIWERSKMSS 178 (335)
Q Consensus 103 v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~---~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~ 178 (335)
|.++.... ++.+|++|+.|.++++|.++++.. +.....+|...|.+++++.. ..+|++++.|+++++|++.....
T Consensus 368 vlSL~~~~-~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~ 446 (775)
T KOG0319|consen 368 VLSLDVWS-SGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKE 446 (775)
T ss_pred eeeeeecc-cCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCccc
Confidence 99999444 678999999999999998853332 34456789999999999773 46899999999999999886222
Q ss_pred ccc--e----eeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCC-cEeEEEeCCCCceeeee
Q 019847 179 SKS--L----HRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKA-QICGLEWNRHHKEILSG 251 (335)
Q Consensus 179 ~~~--~----~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 251 (335)
... . .....|...|++++.+|+. .++++|+ .|.+.++|+++..+.+..+.+|. .+.++.|+|..+.++++
T Consensus 447 ~~~~~~~~~~~t~~aHdKdIN~Vaia~nd-kLiAT~S--qDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~ 523 (775)
T KOG0319|consen 447 TAFPIVLTCRYTERAHDKDINCVAIAPND-KLIATGS--QDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATC 523 (775)
T ss_pred ccccceehhhHHHHhhcccccceEecCCC-ceEEecc--cccceeeecccCceEEEEeeCCccceEEEEeccccceeEec
Confidence 111 1 2345699999999999998 5888887 99999999999999999998765 79999999999999988
Q ss_pred eeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCcccccccccccee
Q 019847 252 HGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDEDSVSHLAGLVSLKT 331 (335)
Q Consensus 252 ~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~i~~~~~ 331 (335)
+.|.+|+||.+.++.+++++.+|...|..+.|-.+|..|++++.||.+++|++.+......+-.|.+.|.++..
T Consensus 524 ------SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~ 597 (775)
T KOG0319|consen 524 ------SGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSV 597 (775)
T ss_pred ------cCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEee
Confidence 77999999999999999999999999999999999999999999999999999999999999999999988876
Q ss_pred c
Q 019847 332 S 332 (335)
Q Consensus 332 ~ 332 (335)
+
T Consensus 598 ~ 598 (775)
T KOG0319|consen 598 S 598 (775)
T ss_pred c
Confidence 4
No 45
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=2.7e-36 Score=230.85 Aligned_cols=272 Identities=19% Similarity=0.307 Sum_probs=227.9
Q ss_pred EEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEec
Q 019847 51 LLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDV 130 (335)
Q Consensus 51 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~ 130 (335)
...+..|+..|.+++.+|+.+++++|+.|..-.+|++.+++....+.+|+..|+++.|+. ++.+|++|+.+|.|++|..
T Consensus 57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fsh-dgtlLATGdmsG~v~v~~~ 135 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSH-DGTLLATGDMSGKVLVFKV 135 (399)
T ss_pred eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEcc-CceEEEecCCCccEEEEEc
Confidence 456778999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred ccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecC
Q 019847 131 RVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGG 210 (335)
Q Consensus 131 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g 210 (335)
.++..... +...-..+.-+.|+|.+..|++|+.||.+.+|.+.+. ...+.+.+|+.++++-.|.|+|++++...
T Consensus 136 stg~~~~~-~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~---~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy-- 209 (399)
T KOG0296|consen 136 STGGEQWK-LDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ---ALCKVMSGHNSPCTCGEFIPDGKRILTGY-- 209 (399)
T ss_pred ccCceEEE-eecccCceEEEEecccccEEEeecCCCcEEEEECCCc---ceeeEecCCCCCcccccccCCCceEEEEe--
Confidence 98776444 3345567888999999999999999999999998763 56788889999999999999998776644
Q ss_pred CCCCeEEEEECCCCceEEEeec--CCcEeEEEeCCCCceeeeee------------------------------------
Q 019847 211 REDGCIKIWNVQKGTCIHGIDA--KAQICGLEWNRHHKEILSGH------------------------------------ 252 (335)
Q Consensus 211 ~~d~~i~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~------------------------------------ 252 (335)
.||+|++||+.+++++..+.. +.+..++.++..+..++.|.
T Consensus 210 -~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~es 288 (399)
T KOG0296|consen 210 -DDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDES 288 (399)
T ss_pred -cCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhh
Confidence 799999999999999887762 12233333333322222220
Q ss_pred -----------eeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCccc
Q 019847 253 -----------GFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDEDSVS 321 (335)
Q Consensus 253 -----------~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~ 321 (335)
.+++++-||+|.|||+...++...+ .|..+|+.+.|-+ ..+|++++.||.|+.||.+.++....+.+
T Consensus 289 ve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c-~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~G 366 (399)
T KOG0296|consen 289 VESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHIC-EHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTG 366 (399)
T ss_pred hhhcccccccchhhcccccceEEEEecccchhheec-cCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEec
Confidence 1445688999999999887776555 5777899999999 67999999999999999999999999999
Q ss_pred cccccccceec
Q 019847 322 HLAGLVSLKTS 332 (335)
Q Consensus 322 ~~~~i~~~~~~ 332 (335)
|...|..+..+
T Consensus 367 H~~~Il~f~ls 377 (399)
T KOG0296|consen 367 HQMGILDFALS 377 (399)
T ss_pred CchheeEEEEc
Confidence 99999876543
No 46
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.7e-36 Score=250.59 Aligned_cols=290 Identities=20% Similarity=0.323 Sum_probs=249.0
Q ss_pred ccccCCCCcccccceeeeecCCceEE-EecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEE
Q 019847 6 RILDAPYLMEDYYSKVIDWGRNNVLA-VALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQL 84 (335)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 84 (335)
++-......+...+.+++++.+.++. .+.++.+++|+.++.++...+. ...+.+..|.|.++++++|...|.+.+
T Consensus 363 ~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~----~~y~l~~~Fvpgd~~Iv~G~k~Gel~v 438 (888)
T KOG0306|consen 363 RTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTIT----CGYILASKFVPGDRYIVLGTKNGELQV 438 (888)
T ss_pred ccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEec----cccEEEEEecCCCceEEEeccCCceEE
Confidence 33334445566778899999876555 4568899999999998766554 347899999999999999999999999
Q ss_pred EeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCe-------ee----EEeecCCCCEEEEEee
Q 019847 85 WDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNN-------VT----SCIKAHSGEVCGLKWS 153 (335)
Q Consensus 85 w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~-------~~----~~~~~~~~~i~~~~~~ 153 (335)
||+.....+..++.|.+.|++++.+| ++..+++|+.|.+|++||..-... .. ......+..|.|+.+|
T Consensus 439 fdlaS~~l~Eti~AHdgaIWsi~~~p-D~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~S 517 (888)
T KOG0306|consen 439 FDLASASLVETIRAHDGAIWSISLSP-DNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVS 517 (888)
T ss_pred EEeehhhhhhhhhccccceeeeeecC-CCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEc
Confidence 99999999999999999999999999 999999999999999999752111 11 0122346789999999
Q ss_pred cCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEee-c
Q 019847 154 NEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGID-A 232 (335)
Q Consensus 154 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~-~ 232 (335)
||+++||++--|.++++|-+++ .+....+.+|.-||.|+..+||++ ++++|+ .|.+|++|-+.-|.+-+.+- +
T Consensus 518 pdgk~LaVsLLdnTVkVyflDt---lKFflsLYGHkLPV~smDIS~DSk-livTgS--ADKnVKiWGLdFGDCHKS~fAH 591 (888)
T KOG0306|consen 518 PDGKLLAVSLLDNTVKVYFLDT---LKFFLSLYGHKLPVLSMDISPDSK-LIVTGS--ADKNVKIWGLDFGDCHKSFFAH 591 (888)
T ss_pred CCCcEEEEEeccCeEEEEEecc---eeeeeeecccccceeEEeccCCcC-eEEecc--CCCceEEeccccchhhhhhhcc
Confidence 9999999999999999999877 455777889999999999999995 666666 89999999999999987765 4
Q ss_pred CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCC
Q 019847 233 KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFG 312 (335)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~ 312 (335)
...|.++.|-|....+.++ +.|+.|+-||-...+.++.+.+|...|.+++.+|+|.++++++.|..|++|....
T Consensus 592 dDSvm~V~F~P~~~~FFt~------gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 592 DDSVMSVQFLPKTHLFFTC------GKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred cCceeEEEEcccceeEEEe------cCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 5689999999988877766 8899999999999999999999999999999999999999999999999998776
No 47
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1e-36 Score=227.53 Aligned_cols=269 Identities=21% Similarity=0.340 Sum_probs=228.1
Q ss_pred eeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCC-CceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEE
Q 019847 49 KKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAE-TSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIIN 127 (335)
Q Consensus 49 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 127 (335)
.+...+++|++.|+.+.|+|+|.+||+|+.|..|.+|++. ..+....+++|.+.|..+.|.+ +++.+++++.|.+++.
T Consensus 38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~-d~s~i~S~gtDk~v~~ 116 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMR-DGSHILSCGTDKTVRG 116 (338)
T ss_pred chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeecc-CCCEEEEecCCceEEE
Confidence 3455668999999999999999999999999999999954 4456677889999999999999 9999999999999999
Q ss_pred EecccCCeeeEEeecCCCCEEEEEeec-CCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEE
Q 019847 128 HDVRVSNNVTSCIKAHSGEVCGLKWSN-EGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLA 206 (335)
Q Consensus 128 ~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 206 (335)
||.++++. ....++|..-|+++.-+. ...++.+++.||++++||+|+.. .++++. .+.+++++.|...+...+.
T Consensus 117 wD~~tG~~-~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~---~~~t~~-~kyqltAv~f~d~s~qv~s 191 (338)
T KOG0265|consen 117 WDAETGKR-IRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKE---AIKTFE-NKYQLTAVGFKDTSDQVIS 191 (338)
T ss_pred Eeccccee-eehhccccceeeecCccccCCeEEEecCCCceEEEEeecccc---hhhccc-cceeEEEEEecccccceee
Confidence 99998876 555788999999988444 34577888999999999998743 344443 4567999999999987776
Q ss_pred EecCCCCCeEEEEECCCCceEEEeecC-CcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCc----eeecccCCC
Q 019847 207 TGGGREDGCIKIWNVQKGTCIHGIDAK-AQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMT----KVGELQSSN 281 (335)
Q Consensus 207 ~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~----~~~~~~~~~ 281 (335)
.+ .|+.|++||++.+.....+.++ .+|+.+..+|+|.++.+- +.|..+++||++... ++..+.+|.
T Consensus 192 gg---Idn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsn------sMd~tvrvwd~rp~~p~~R~v~if~g~~ 262 (338)
T KOG0265|consen 192 GG---IDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSN------SMDNTVRVWDVRPFAPSQRCVKIFQGHI 262 (338)
T ss_pred cc---ccCceeeeccccCcceEEeecccCceeeEEeccCCCccccc------cccceEEEEEecccCCCCceEEEeecch
Confidence 54 8999999999999999999875 589999999999999876 679999999997643 355566553
Q ss_pred C----ceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCccccccccccceec
Q 019847 282 S----RILDLSQSPDGLTVATAGADETIRFWEAFGPSGDEDSVSHLAGLVSLKTS 332 (335)
Q Consensus 282 ~----~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~i~~~~~~ 332 (335)
. .....+|+|++..+.+|+.|..+++||........+..+|...|..+.|-
T Consensus 263 hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fh 317 (338)
T KOG0265|consen 263 HNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFH 317 (338)
T ss_pred hhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeec
Confidence 3 34567899999999999999999999999999999999999999888774
No 48
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.6e-36 Score=215.73 Aligned_cols=276 Identities=20% Similarity=0.306 Sum_probs=234.9
Q ss_pred ccccceeeeecC--CceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCcee
Q 019847 15 EDYYSKVIDWGR--NNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKL 92 (335)
Q Consensus 15 ~~~~~~~~~~~~--~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 92 (335)
.+..+.++.++. ++.++++.|.+|++|+...+.+++ ++.+|...|..++.+.|...+++|+.|..+.+||+++|+.
T Consensus 16 ~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik--tYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv 93 (307)
T KOG0316|consen 16 AQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK--TYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKV 93 (307)
T ss_pred cccceEEEEEccCCCEEEEcCCCceEEeecccccceee--eecCCCceeeeccccccccccccCCCCceEEEEEcccCee
Confidence 456788888886 578889999999999999998755 5568999999999999999999999999999999999999
Q ss_pred EeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCC-eeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEE
Q 019847 93 VRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSN-NVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIW 171 (335)
Q Consensus 93 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw 171 (335)
.+.+.+|...|+.++|+. +...+++|+.|.++++||.+... ++++.+......|.++..+ +..+++|+.||+++.|
T Consensus 94 ~Rr~rgH~aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRty 170 (307)
T KOG0316|consen 94 DRRFRGHLAQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTY 170 (307)
T ss_pred eeecccccceeeEEEecC-cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEE
Confidence 999999999999999998 99999999999999999998643 4577777888899999876 5689999999999999
Q ss_pred EccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCC---cEeEEEeCCCCcee
Q 019847 172 ERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKA---QICGLEWNRHHKEI 248 (335)
Q Consensus 172 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 248 (335)
|++.+. ..... ...+|++++|++++...++.+ .|+++++.|-.+|+.+..++++. .-...+++.....+
T Consensus 171 diR~G~---l~sDy--~g~pit~vs~s~d~nc~La~~---l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV 242 (307)
T KOG0316|consen 171 DIRKGT---LSSDY--FGHPITSVSFSKDGNCSLASS---LDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHV 242 (307)
T ss_pred Eeecce---eehhh--cCCcceeEEecCCCCEEEEee---ccceeeecccchhHHHHHhcccccceeeeeeeecccceeE
Confidence 999753 23333 346799999999998777755 89999999999999998887654 23456677777777
Q ss_pred eeeeeeeeecCCCeEEEEECCCCceeecccCCCCc-eeEeEEcCCCCEEEEEeCCCcEEEEec
Q 019847 249 LSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSR-ILDLSQSPDGLTVATAGADETIRFWEA 310 (335)
Q Consensus 249 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~~dg~v~iw~~ 310 (335)
++| ++||.+.+||+.....+..+..+... +++++++|.-.-|+++.. +.+.+|.-
T Consensus 243 ~sg------SEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~-~~~~~~~~ 298 (307)
T KOG0316|consen 243 FSG------SEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATG-HGDLFWYQ 298 (307)
T ss_pred Eec------cCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecC-Cceeceee
Confidence 777 89999999999999999999988887 899999998777777754 45666643
No 49
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.3e-34 Score=213.35 Aligned_cols=250 Identities=22% Similarity=0.431 Sum_probs=212.7
Q ss_pred eeeEEeecCCCCCceEEEEcCC-CCEEEEEECCCcEEEEeCCCc---eeEeee-cccccceeEeeecCCCCCEEEEeeCC
Q 019847 48 VKKLLQVPGEDDYPTSVSWSHD-AKTLAVGYMDSKLQLWDAETS---KLVRNL-EGHHRRVATSSWNHWNGHILTSGSKD 122 (335)
Q Consensus 48 ~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iw~~~~~---~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d 122 (335)
+.....+++|.+.+..++|+|. |..||+++.|..|++|+...+ .+...+ .+|+..|++++|+| .+++|++++.|
T Consensus 4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp-~g~~La~aSFD 82 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSP-HGRYLASASFD 82 (312)
T ss_pred ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecC-CCcEEEEeecc
Confidence 3445677899999999999998 889999999999999998843 333333 36899999999999 99999999999
Q ss_pred CcEEEEecccCC-eeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCC
Q 019847 123 KSIINHDVRVSN-NVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQ 201 (335)
Q Consensus 123 g~i~~~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 201 (335)
.++.+|.-..+. +....+.+|+..|.+++|+++|++||+++.|+.|.||.+...........+++|...|..+.|+|..
T Consensus 83 ~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~ 162 (312)
T KOG0645|consen 83 ATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTE 162 (312)
T ss_pred ceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCc
Confidence 999999865332 4577889999999999999999999999999999999999878888899999999999999999987
Q ss_pred CcEEEEecCCCCCeEEEEECC---CCceEEEeecCC-cEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecc
Q 019847 202 VNVLATGGGREDGCIKIWNVQ---KGTCIHGIDAKA-QICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGEL 277 (335)
Q Consensus 202 ~~~~~~~~g~~d~~i~i~d~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~ 277 (335)
. ++++++ .|++|++|+-. ..+++.++..+. .+.+++|++.|..++++ ++|++++||...+.- -
T Consensus 163 d-lL~S~S--YDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~------sdD~tv~Iw~~~~~~----~ 229 (312)
T KOG0645|consen 163 D-LLFSCS--YDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSC------SDDGTVSIWRLYTDL----S 229 (312)
T ss_pred c-eeEEec--cCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEe------cCCcceEeeeeccCc----c
Confidence 5 666666 89999999876 236778887654 89999999999988887 889999999865211 1
Q ss_pred cCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCC
Q 019847 278 QSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGP 313 (335)
Q Consensus 278 ~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~ 313 (335)
..|..++..++|. + ..|++++.|+.|++|.-...
T Consensus 230 ~~~sr~~Y~v~W~-~-~~IaS~ggD~~i~lf~~s~~ 263 (312)
T KOG0645|consen 230 GMHSRALYDVPWD-N-GVIASGGGDDAIRLFKESDS 263 (312)
T ss_pred hhcccceEeeeec-c-cceEeccCCCEEEEEEecCC
Confidence 2467789999998 4 48999999999999988754
No 50
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=6.7e-36 Score=219.76 Aligned_cols=290 Identities=17% Similarity=0.269 Sum_probs=238.2
Q ss_pred ccccceeeeecC--CceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCcee
Q 019847 15 EDYYSKVIDWGR--NNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKL 92 (335)
Q Consensus 15 ~~~~~~~~~~~~--~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 92 (335)
+..+++-+.++. +.+++++.|....||--.+|+. +-++.+|++.|.|++.+.+.+++++|+.|.++++||+++|+.
T Consensus 9 HERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGer--lGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~ 86 (327)
T KOG0643|consen 9 HERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGER--LGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQ 86 (327)
T ss_pred CccccceEEecCCCcEEEEecCCCCceEEEecCCce--eeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcE
Confidence 566778888887 4577888999999999888875 556779999999999999999999999999999999999999
Q ss_pred EeeecccccceeEeeecCCCCCEEEEeeC-----CCcEEEEecccC------CeeeEEeecCCCCEEEEEeecCCCEEEE
Q 019847 93 VRNLEGHHRRVATSSWNHWNGHILTSGSK-----DKSIINHDVRVS------NNVTSCIKAHSGEVCGLKWSNEGNLLAS 161 (335)
Q Consensus 93 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----dg~i~~~d~~~~------~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 161 (335)
+..++ ...+|..+.|++ ++++++.... .+.|.++|++.. +.+...+..+.+.++.+-|.|-+++|++
T Consensus 87 la~~k-~~~~Vk~~~F~~-~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~ 164 (327)
T KOG0643|consen 87 LATWK-TNSPVKRVDFSF-GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIA 164 (327)
T ss_pred EEEee-cCCeeEEEeecc-CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEE
Confidence 99988 678999999999 8888777654 468999999832 2234445667899999999999999999
Q ss_pred EeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEe
Q 019847 162 GGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEW 241 (335)
Q Consensus 162 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 241 (335)
|.+||.|.+||++++. +.+.....|...|+.+.++|+..+++ +++ .|.+-++||.++-+.++++....|+++.++
T Consensus 165 Ghe~G~is~~da~~g~--~~v~s~~~h~~~Ind~q~s~d~T~Fi-T~s--~Dttakl~D~~tl~v~Kty~te~PvN~aai 239 (327)
T KOG0643|consen 165 GHEDGSISIYDARTGK--ELVDSDEEHSSKINDLQFSRDRTYFI-TGS--KDTTAKLVDVRTLEVLKTYTTERPVNTAAI 239 (327)
T ss_pred ecCCCcEEEEEcccCc--eeeechhhhccccccccccCCcceEE-ecc--cCccceeeeccceeeEEEeeecccccceec
Confidence 9999999999998753 34555567889999999999996554 544 899999999999999999999999999999
Q ss_pred CCCCceeeeeeeeee------ecCC--CeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCC
Q 019847 242 NRHHKEILSGHGFSA------SGDG--NKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGP 313 (335)
Q Consensus 242 ~~~~~~~~~~~~~~~------~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~ 313 (335)
+|....++.|.+--+ .... -.-++|++-..+.+..+++|-++|++++|+|+|+..++|++||.|++.-++..
T Consensus 240 sP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 240 SPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDSN 319 (327)
T ss_pred ccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEeccc
Confidence 999988887632100 0001 11233333334556778899999999999999999999999999999876643
No 51
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=4.3e-37 Score=232.48 Aligned_cols=280 Identities=18% Similarity=0.340 Sum_probs=244.8
Q ss_pred cccceeeeecCC--ceEEEecCCeEEEEEecCCceeeEEeecC------CCCCceEEEEcCCCCEEEEEECCCcEEEEeC
Q 019847 16 DYYSKVIDWGRN--NVLAVALGPVLFLWKWENGKVKKLLQVPG------EDDYPTSVSWSHDAKTLAVGYMDSKLQLWDA 87 (335)
Q Consensus 16 ~~~~~~~~~~~~--~~~~~~~~~~i~vw~~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~ 87 (335)
...+.|..|+|+ .+++++.||-|.+||..+|+..+-++++. +..+|.|+.|+.|..++|+|+.||.|++|.+
T Consensus 213 KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri 292 (508)
T KOG0275|consen 213 KSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRI 292 (508)
T ss_pred ccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEE
Confidence 445677788874 57777899999999999998876655543 6789999999999999999999999999999
Q ss_pred CCceeEeeec-ccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCC
Q 019847 88 ETSKLVRNLE-GHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDN 166 (335)
Q Consensus 88 ~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 166 (335)
++|.+++.|. .|...|+++.|+. ++..+++++.|.++++.-+..++. .+.+++|.+.|+...|.++|+++++++.||
T Consensus 293 ~tG~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~-LKEfrGHsSyvn~a~ft~dG~~iisaSsDg 370 (508)
T KOG0275|consen 293 ETGQCLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKC-LKEFRGHSSYVNEATFTDDGHHIISASSDG 370 (508)
T ss_pred ecchHHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEEeccccchh-HHHhcCccccccceEEcCCCCeEEEecCCc
Confidence 9999999997 8999999999999 999999999999999999997665 666899999999999999999999999999
Q ss_pred eEEEEEccCCCcccceeecc--CCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec----CCcEeEEE
Q 019847 167 VVRIWERSKMSSSKSLHRFT--DHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA----KAQICGLE 240 (335)
Q Consensus 167 ~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~----~~~~~~~~ 240 (335)
+|++|+.++.+. +.+++ +...+|+++..-|.++.-++.+. ..+++++.++. |+.++.+.. ++...+..
T Consensus 371 tvkvW~~KtteC---~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCN--rsntv~imn~q-GQvVrsfsSGkREgGdFi~~~ 444 (508)
T KOG0275|consen 371 TVKVWHGKTTEC---LSTFKPLGTDYPVNSVILLPKNPEHFIVCN--RSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAI 444 (508)
T ss_pred cEEEecCcchhh---hhhccCCCCcccceeEEEcCCCCceEEEEc--CCCeEEEEecc-ceEEeeeccCCccCCceEEEE
Confidence 999999776443 44443 34567889988888877777776 78999999986 788888764 34677888
Q ss_pred eCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEe
Q 019847 241 WNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWE 309 (335)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~ 309 (335)
.+|.|.++.+. ++|+.++.|.+.+++...++..|...+..++-+|..+.||+-++||.+++|.
T Consensus 445 lSpkGewiYci------gED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 445 LSPKGEWIYCI------GEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred ecCCCcEEEEE------ccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 99999999876 8899999999999999999999999999999999999999999999999995
No 52
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-35 Score=250.60 Aligned_cols=287 Identities=19% Similarity=0.322 Sum_probs=244.3
Q ss_pred CcccccceeeeecCCc--eEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCc
Q 019847 13 LMEDYYSKVIDWGRNN--VLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETS 90 (335)
Q Consensus 13 ~~~~~~~~~~~~~~~~--~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 90 (335)
......+..++|+|.+ ++++-..|.|++||.+-+.++. ++..|.++|+.++|+|++.++++|+.|-.|+||+..+.
T Consensus 6 EskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~--rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r 83 (1202)
T KOG0292|consen 6 ESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID--RFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR 83 (1202)
T ss_pred hcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHh--hhhccCCccceeeecCCCCeEEecCCccEEEEEecccc
Confidence 3445567789999964 6677789999999999887744 56689999999999999999999999999999999999
Q ss_pred eeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEE
Q 019847 91 KLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRI 170 (335)
Q Consensus 91 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 170 (335)
+++.++.+|-+-|+.+.|++ .-..+++++.|.+|++|+..+.++ +..+.+|...|.|..|+|....++++|-|.+||+
T Consensus 84 rclftL~GHlDYVRt~~FHh-eyPWIlSASDDQTIrIWNwqsr~~-iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRV 161 (1202)
T KOG0292|consen 84 RCLFTLLGHLDYVRTVFFHH-EYPWILSASDDQTIRIWNWQSRKC-IAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRV 161 (1202)
T ss_pred eehhhhccccceeEEeeccC-CCceEEEccCCCeEEEEeccCCce-EEEEecCceEEEeeccCCccceEEEecccceEEE
Confidence 99999999999999999999 999999999999999999996654 7779999999999999999999999999999999
Q ss_pred EEccCCCcc--------------------------cceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCC
Q 019847 171 WERSKMSSS--------------------------KSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKG 224 (335)
Q Consensus 171 wd~~~~~~~--------------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~ 224 (335)
||+...... ...+.+.+|...|+-++|+|.-+ ++++|+ .|+.|++|.+...
T Consensus 162 WDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp-liVSG~--DDRqVKlWrmnet 238 (1202)
T KOG0292|consen 162 WDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP-LIVSGA--DDRQVKLWRMNET 238 (1202)
T ss_pred EeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc-eEEecC--CcceeeEEEeccc
Confidence 998642211 01245678999999999999886 677766 9999999998654
Q ss_pred ce--EEEee-cCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeC
Q 019847 225 TC--IHGID-AKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGA 301 (335)
Q Consensus 225 ~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 301 (335)
+. +.+.. +.+++.++-|+|....+++. ++|+.|++||+...+.+++++...++...++.+|..+++++| .
T Consensus 239 KaWEvDtcrgH~nnVssvlfhp~q~lIlSn------sEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAg-H 311 (1202)
T KOG0292|consen 239 KAWEVDTCRGHYNNVSSVLFHPHQDLILSN------SEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAG-H 311 (1202)
T ss_pred cceeehhhhcccCCcceEEecCccceeEec------CCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeee-c
Confidence 32 22333 35689999999999998877 899999999999999999998888889999999999877755 5
Q ss_pred CCcEEEEecCCC
Q 019847 302 DETIRFWEAFGP 313 (335)
Q Consensus 302 dg~v~iw~~~~~ 313 (335)
|+-+.+|.++..
T Consensus 312 DsGm~VFkleRE 323 (1202)
T KOG0292|consen 312 DSGMIVFKLERE 323 (1202)
T ss_pred CCceEEEEEccc
Confidence 666678888744
No 53
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.4e-36 Score=240.33 Aligned_cols=266 Identities=18% Similarity=0.316 Sum_probs=229.0
Q ss_pred EEeecCCCCCceEEEEcC-CCCEEEEEECCCcEEEEeCCC-ceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEE
Q 019847 51 LLQVPGEDDYPTSVSWSH-DAKTLAVGYMDSKLQLWDAET-SKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINH 128 (335)
Q Consensus 51 ~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~ 128 (335)
...+.+|+..|+++.|.| .+.+|++++.|+.|+||++.. +++++++.+|..+|.+++|++ .+..|++++.|+.+++|
T Consensus 207 ~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~-~g~~fLS~sfD~~lKlw 285 (503)
T KOG0282|consen 207 SHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNN-CGTSFLSASFDRFLKLW 285 (503)
T ss_pred eeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccc-cCCeeeeeecceeeeee
Confidence 456789999999999999 899999999999999999976 899999999999999999999 99999999999999999
Q ss_pred ecccCCeeeEEeecCCCCEEEEEeecCC-CEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEE
Q 019847 129 DVRVSNNVTSCIKAHSGEVCGLKWSNEG-NLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLAT 207 (335)
Q Consensus 129 d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 207 (335)
|.+++....+. .....++++.|+|++ +.+++|+.|+.|+.||+|.+ +.++.+..|-+.|..+.|-+++.+++++
T Consensus 286 DtETG~~~~~f--~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~---kvvqeYd~hLg~i~~i~F~~~g~rFiss 360 (503)
T KOG0282|consen 286 DTETGQVLSRF--HLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSG---KVVQEYDRHLGAILDITFVDEGRRFISS 360 (503)
T ss_pred ccccceEEEEE--ecCCCceeeecCCCCCcEEEEecCCCcEEEEeccch---HHHHHHHhhhhheeeeEEccCCceEeee
Confidence 99988865443 235568999999987 89999999999999999984 4678888899999999999999887776
Q ss_pred ecCCCCCeEEEEECCCCceEEEeec--CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCC---ceeecccCCCC
Q 019847 208 GGGREDGCIKIWNVQKGTCIHGIDA--KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNM---TKVGELQSSNS 282 (335)
Q Consensus 208 ~~g~~d~~i~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~---~~~~~~~~~~~ 282 (335)
. +|+.+++|+.+....+..+.. .....++..+|+++.++.- +.|+.|.+|.+... .....+++|..
T Consensus 361 S---Ddks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQ------s~dN~i~ifs~~~~~r~nkkK~feGh~v 431 (503)
T KOG0282|consen 361 S---DDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQ------SMDNYIAIFSTVPPFRLNKKKRFEGHSV 431 (503)
T ss_pred c---cCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhh------ccCceEEEEecccccccCHhhhhcceec
Confidence 6 799999999998877665543 3357789999999999876 67999999987543 33445677754
Q ss_pred --ceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCcccccccccccee
Q 019847 283 --RILDLSQSPDGLTVATAGADETIRFWEAFGPSGDEDSVSHLAGLVSLKT 331 (335)
Q Consensus 283 --~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~i~~~~~ 331 (335)
.-..+.|||||++|++|+.||.+.+||..+.+.......|...+.++.+
T Consensus 432 aGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~w 482 (503)
T KOG0282|consen 432 AGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDW 482 (503)
T ss_pred cCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEe
Confidence 4567899999999999999999999999999999988888777666544
No 54
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=1.1e-34 Score=246.36 Aligned_cols=284 Identities=20% Similarity=0.361 Sum_probs=245.2
Q ss_pred ccccceeeeecCCceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEe
Q 019847 15 EDYYSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVR 94 (335)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~ 94 (335)
++..+.+..|.++.+++++.+++|++|+..++.... ..+.+|.+.|.++++...+.+|++|+.|.++++||..+|++..
T Consensus 207 ~~~~~~~~q~~~~~~~~~s~~~tl~~~~~~~~~~i~-~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~ 285 (537)
T KOG0274|consen 207 DDHVVLCLQLHDGFFKSGSDDSTLHLWDLNNGYLIL-TRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTH 285 (537)
T ss_pred CcchhhhheeecCeEEecCCCceeEEeecccceEEE-eeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEE
Confidence 566778888999999999999999999999887643 2378999999999998878899999999999999999999999
Q ss_pred eecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEcc
Q 019847 95 NLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERS 174 (335)
Q Consensus 95 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 174 (335)
.+.+|...+.++.. .+..+++|+.|.+|++|+++++. ....+.+|.++|.++..+ +.++++|+.|++|++||+.
T Consensus 286 ~l~gh~stv~~~~~---~~~~~~sgs~D~tVkVW~v~n~~-~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~ 359 (537)
T KOG0274|consen 286 SLQGHTSSVRCLTI---DPFLLVSGSRDNTVKVWDVTNGA-CLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPR 359 (537)
T ss_pred EecCCCceEEEEEc---cCceEeeccCCceEEEEeccCcc-eEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhh
Confidence 99999999999988 66888999999999999999655 466677799999999987 7799999999999999988
Q ss_pred CCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCC-ceEEEeecCCcEeEEEeCCCCceeeeeee
Q 019847 175 KMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKG-TCIHGIDAKAQICGLEWNRHHKEILSGHG 253 (335)
Q Consensus 175 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (335)
. .+.++.+.+|...|.++.+.+. ..+.+|+ .|+.|++||+++. +++..+.++..+. -.....++.++++
T Consensus 360 ~---~~cl~sl~gH~~~V~sl~~~~~--~~~~Sgs--~D~~IkvWdl~~~~~c~~tl~~h~~~v-~~l~~~~~~Lvs~-- 429 (537)
T KOG0274|consen 360 T---GKCLKSLSGHTGRVYSLIVDSE--NRLLSGS--LDTTIKVWDLRTKRKCIHTLQGHTSLV-SSLLLRDNFLVSS-- 429 (537)
T ss_pred h---ceeeeeecCCcceEEEEEecCc--ceEEeee--eccceEeecCCchhhhhhhhcCCcccc-cccccccceeEec--
Confidence 5 6779999999999999988775 3555655 8999999999999 8999998877655 3334456666666
Q ss_pred eeeecCCCeEEEEECCCCceeecccC-CCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCccc
Q 019847 254 FSASGDGNKLCLWKYPNMTKVGELQS-SNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDEDSVS 321 (335)
Q Consensus 254 ~~~~~~~~~i~i~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~ 321 (335)
+.|+.|++||..+++++..+.+ |.+.|..+++. ...+++++.||.+++||+..++.......
T Consensus 430 ----~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l~~ 492 (537)
T KOG0274|consen 430 ----SADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTLLS 492 (537)
T ss_pred ----cccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhhhh
Confidence 6799999999999999999998 67889988886 45788999999999999999887775533
No 55
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.4e-35 Score=231.65 Aligned_cols=283 Identities=19% Similarity=0.297 Sum_probs=236.6
Q ss_pred ccccceeeeecCC--ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCcee
Q 019847 15 EDYYSKVIDWGRN--NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKL 92 (335)
Q Consensus 15 ~~~~~~~~~~~~~--~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 92 (335)
..-.+.+++|+|. .-+++++.-.+.+|+..+....+. +......++++.|..||++||+|...|.|+|||..+...
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~--~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~i 102 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKT--FSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVI 102 (487)
T ss_pred ccCcceeEecCCCCCCceEEecccEEEEEecchhhhhhh--HHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHH
Confidence 3456788999983 566667778899999887665442 234567899999999999999999999999999888778
Q ss_pred EeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeec-CCCEEEEEeCCCeEEEE
Q 019847 93 VRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSN-EGNLLASGGDDNVVRIW 171 (335)
Q Consensus 93 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iw 171 (335)
++.+.+|..++..+.|+|.++..|++|+.|+.+++||+.+... ...+.+|+..|.+.+|+| ++..+++|+.||.|++|
T Consensus 103 LR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v-~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~ 181 (487)
T KOG0310|consen 103 LRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV-QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLW 181 (487)
T ss_pred HHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE-EEEecCCcceeEeeccccCCCeEEEecCCCceEEEE
Confidence 8999999999999999998999999999999999999986664 557889999999999999 56799999999999999
Q ss_pred EccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCC-ceEEEee-cCCcEeEEEeCCCCceee
Q 019847 172 ERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKG-TCIHGID-AKAQICGLEWNRHHKEIL 249 (335)
Q Consensus 172 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~ 249 (335)
|++... ..+..+ .|..+|..+.+-|.|. ++++++ ...+++||+.+| +.+.... ++..++|+.+..++..|+
T Consensus 182 DtR~~~--~~v~el-nhg~pVe~vl~lpsgs-~iasAg---Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLl 254 (487)
T KOG0310|consen 182 DTRSLT--SRVVEL-NHGCPVESVLALPSGS-LIASAG---GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLL 254 (487)
T ss_pred EeccCC--ceeEEe-cCCCceeeEEEcCCCC-EEEEcC---CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEe
Confidence 999753 233343 4899999999999986 555553 589999999965 4444444 677899999999998888
Q ss_pred eeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCC
Q 019847 250 SGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPS 314 (335)
Q Consensus 250 ~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~ 314 (335)
++ +-|+.+++||+.+.+.+..+.- .++|.+++.+|+++.++.|..||.+.+=+....+
T Consensus 255 S~------sLD~~VKVfd~t~~Kvv~s~~~-~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k~ 312 (487)
T KOG0310|consen 255 SG------SLDRHVKVFDTTNYKVVHSWKY-PGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVKK 312 (487)
T ss_pred ec------ccccceEEEEccceEEEEeeec-ccceeeEEecCCCceEEEecccceeeeehhhccc
Confidence 87 7799999999999998888764 5689999999999999999999998877554443
No 56
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.7e-36 Score=218.23 Aligned_cols=238 Identities=25% Similarity=0.496 Sum_probs=203.8
Q ss_pred eeeeecC---CceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcC-CCCEEEEEECCCcEEEEeCCCceeEee
Q 019847 20 KVIDWGR---NNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSH-DAKTLAVGYMDSKLQLWDAETSKLVRN 95 (335)
Q Consensus 20 ~~~~~~~---~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~ 95 (335)
.-++|++ +.+++++.||++++||.. ....++..++.|...|.++.|++ +++.+++++.|++|++|+...++.+.+
T Consensus 64 fdV~Wse~~e~~~~~a~GDGSLrl~d~~-~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~T 142 (311)
T KOG0277|consen 64 FDVAWSENHENQVIAASGDGSLRLFDLT-MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQT 142 (311)
T ss_pred eEeeecCCCcceEEEEecCceEEEeccC-CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEe
Confidence 3478887 468888999999999953 33356777889999999999999 566788889999999999999999999
Q ss_pred ecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeec-CCCEEEEEeCCCeEEEEEcc
Q 019847 96 LEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSN-EGNLLASGGDDNVVRIWERS 174 (335)
Q Consensus 96 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~ 174 (335)
+.+|...|...+|+|..++++++++.|+.+++||++...+.+. +..|...|.++.|+. +.+.+++|+.|+.|+.||++
T Consensus 143 f~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir 221 (311)
T KOG0277|consen 143 FNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIR 221 (311)
T ss_pred ecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EEeccceeEeecccccCCcEEEecCCCceEEEEehh
Confidence 9999999999999999999999999999999999998776555 788999999999998 78899999999999999999
Q ss_pred CCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCC-ceEEEeecCC-cEeEEEeCCCCceeeeee
Q 019847 175 KMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKG-TCIHGIDAKA-QICGLEWNRHHKEILSGH 252 (335)
Q Consensus 175 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 252 (335)
... .++..+.+|.-.|..++|+|....++++++ .|-++++||...+ ..+.+.+++. -+..+.|++.....++.
T Consensus 222 ~~r--~pl~eL~gh~~AVRkvk~Sph~~~lLaSas--YDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs- 296 (311)
T KOG0277|consen 222 NLR--TPLFELNGHGLAVRKVKFSPHHASLLASAS--YDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVAS- 296 (311)
T ss_pred hcc--ccceeecCCceEEEEEecCcchhhHhhhcc--ccceEEecccccchhhhhhhhccceEEeccccccccCceeee-
Confidence 864 567888999999999999999999999998 9999999999854 4455555554 47789998875443332
Q ss_pred eeeeecCCCeEEEEEC
Q 019847 253 GFSASGDGNKLCLWKY 268 (335)
Q Consensus 253 ~~~~~~~~~~i~i~d~ 268 (335)
.+-|+.++||+.
T Consensus 297 ----~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 297 ----TGWDELLYVWNP 308 (311)
T ss_pred ----cccccceeeecc
Confidence 367999999983
No 57
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=2.8e-34 Score=220.96 Aligned_cols=282 Identities=19% Similarity=0.372 Sum_probs=228.8
Q ss_pred CcccccceeeeecCCceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCC---CCEEEEEECCCcEEEEeCCC
Q 019847 13 LMEDYYSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHD---AKTLAVGYMDSKLQLWDAET 89 (335)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~iw~~~~ 89 (335)
+.++-.+.++.-.++.+++++.||.+++||... +. ...+.+|.++|.+++|.-. ...+++++.|.++++|..+.
T Consensus 102 ~~hdDWVSsv~~~~~~IltgsYDg~~riWd~~G-k~--~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~ 178 (423)
T KOG0313|consen 102 FLHDDWVSSVKGASKWILTGSYDGTSRIWDLKG-KS--IKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNV 178 (423)
T ss_pred ccchhhhhhhcccCceEEEeecCCeeEEEecCC-ce--EEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecC
Confidence 345667888888888999999999999999754 43 4456799999998888543 34699999999999999887
Q ss_pred ceeE----eeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccC------------------------CeeeEEee
Q 019847 90 SKLV----RNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVS------------------------NNVTSCIK 141 (335)
Q Consensus 90 ~~~~----~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~------------------------~~~~~~~~ 141 (335)
++.. ....+|...|-++...+ ++..+++|+.|..|.+|+.++. +.++..+.
T Consensus 179 ~~~~~~~~~~~~GHk~~V~sVsv~~-sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~ 257 (423)
T KOG0313|consen 179 GENKVKALKVCRGHKRSVDSVSVDS-SGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLE 257 (423)
T ss_pred chhhhhHHhHhcccccceeEEEecC-CCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEec
Confidence 7543 33458999999999999 9999999999999999993211 12355678
Q ss_pred cCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEEC
Q 019847 142 AHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNV 221 (335)
Q Consensus 142 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~ 221 (335)
+|..+|.++.|++ ...+.+++.|.+|+.||+..+.. ...+. .+..++++..+|.. .++++|+ .|..|++||.
T Consensus 258 GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~---~~~~~-~~ksl~~i~~~~~~-~Ll~~gs--sdr~irl~DP 329 (423)
T KOG0313|consen 258 GHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGL---KSTLT-TNKSLNCISYSPLS-KLLASGS--SDRHIRLWDP 329 (423)
T ss_pred ccccceeeEEEcC-CCceEeecccceEEEEEeecccc---eeeee-cCcceeEeeccccc-ceeeecC--CCCceeecCC
Confidence 9999999999998 67899999999999999988654 33332 45678999999976 5777766 8999999999
Q ss_pred CCCc---eEEEee-cCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCc-eeecccCCCCceeEeEEcCCCCEE
Q 019847 222 QKGT---CIHGID-AKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMT-KVGELQSSNSRILDLSQSPDGLTV 296 (335)
Q Consensus 222 ~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l 296 (335)
+++. ..+.+. +.+-|.++.|+|...+.++. ++.|+++++||+++.+ ++..+.+|...|.++.|+.. .++
T Consensus 330 R~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S-----~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~-~~I 403 (423)
T KOG0313|consen 330 RTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVS-----GSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEG-GLI 403 (423)
T ss_pred CCCCCceeEEeeecchhhhhheecCCCCceEEEE-----EecCCeEEEEEeccCCCcceeeccCCceEEEEeccCC-ceE
Confidence 8863 223333 45579999999999877543 4779999999999987 99999999999999999764 489
Q ss_pred EEEeCCCcEEEEecCC
Q 019847 297 ATAGADETIRFWEAFG 312 (335)
Q Consensus 297 ~~~~~dg~v~iw~~~~ 312 (335)
++||.|.+|+|+.-..
T Consensus 404 vSGGaD~~l~i~~~~~ 419 (423)
T KOG0313|consen 404 VSGGADNKLRIFKGSP 419 (423)
T ss_pred EeccCcceEEEecccc
Confidence 9999999999997543
No 58
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5e-35 Score=246.36 Aligned_cols=243 Identities=19% Similarity=0.316 Sum_probs=198.7
Q ss_pred CCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCC----------------------------------------------
Q 019847 56 GEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAET---------------------------------------------- 89 (335)
Q Consensus 56 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~---------------------------------------------- 89 (335)
.|.+.|.++.|++||+|||+|+.||.|+||.+..
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 7999999999999999999999999999998643
Q ss_pred --------------ceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeec-
Q 019847 90 --------------SKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSN- 154 (335)
Q Consensus 90 --------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~- 154 (335)
.+++..+.+|.+.|..+.|+ ..++|++++.|.+|++|++....+ +..+ .|...|+|++|+|
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWS--Kn~fLLSSSMDKTVRLWh~~~~~C-L~~F-~HndfVTcVaFnPv 420 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWS--KNNFLLSSSMDKTVRLWHPGRKEC-LKVF-SHNDFVTCVAFNPV 420 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccc--cCCeeEeccccccEEeecCCCcce-eeEE-ecCCeeEEEEeccc
Confidence 01334567899999999999 688999999999999999985554 4444 5999999999999
Q ss_pred CCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec--
Q 019847 155 EGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA-- 232 (335)
Q Consensus 155 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-- 232 (335)
|.++|++|+-||.||||++... .+.....-..-|++++|.|+|+..+ +|+ .+|.+++|+.+..+.......
T Consensus 421 DDryFiSGSLD~KvRiWsI~d~----~Vv~W~Dl~~lITAvcy~PdGk~av-IGt--~~G~C~fY~t~~lk~~~~~~I~~ 493 (712)
T KOG0283|consen 421 DDRYFISGSLDGKVRLWSISDK----KVVDWNDLRDLITAVCYSPDGKGAV-IGT--FNGYCRFYDTEGLKLVSDFHIRL 493 (712)
T ss_pred CCCcEeecccccceEEeecCcC----eeEeehhhhhhheeEEeccCCceEE-EEE--eccEEEEEEccCCeEEEeeeEee
Confidence 8999999999999999998752 2333334457799999999997544 444 999999999988777655431
Q ss_pred -------CCcEeEEEeCCCCce-eeeeeeeeeecCCCeEEEEECCCCceeecccCCCC--ceeEeEEcCCCCEEEEEeCC
Q 019847 233 -------KAQICGLEWNRHHKE-ILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNS--RILDLSQSPDGLTVATAGAD 302 (335)
Q Consensus 233 -------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~d 302 (335)
+..|+.++|.|...- +++. +.|..|+|||.++..++..++++.. .-....|+.||++|+++++|
T Consensus 494 ~~~Kk~~~~rITG~Q~~p~~~~~vLVT------SnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seD 567 (712)
T KOG0283|consen 494 HNKKKKQGKRITGLQFFPGDPDEVLVT------SNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASED 567 (712)
T ss_pred ccCccccCceeeeeEecCCCCCeEEEe------cCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecC
Confidence 237999999987663 3332 6799999999999999999987644 23456899999999999999
Q ss_pred CcEEEEecCCCCC
Q 019847 303 ETIRFWEAFGPSG 315 (335)
Q Consensus 303 g~v~iw~~~~~~~ 315 (335)
..|++|++.....
T Consensus 568 s~VYiW~~~~~~~ 580 (712)
T KOG0283|consen 568 SWVYIWKNDSFNS 580 (712)
T ss_pred ceEEEEeCCCCcc
Confidence 9999999866543
No 59
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.7e-33 Score=208.86 Aligned_cols=281 Identities=17% Similarity=0.257 Sum_probs=229.9
Q ss_pred ccccceeeeecCC--ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEEC--CCcEEEEeCCCc
Q 019847 15 EDYYSKVIDWGRN--NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYM--DSKLQLWDAETS 90 (335)
Q Consensus 15 ~~~~~~~~~~~~~--~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iw~~~~~ 90 (335)
....+++++|+++ .+++++.|..+++||..+++..+.+. .+...+..++|......++.++. |.+|+..++.+.
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~--skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dN 90 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTIN--SKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDN 90 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEee--cccccccEEEEecCCceEEEccCCCCCceEEEEeecC
Confidence 3567889999984 46666788899999999998766554 45667888999887777777765 889999999999
Q ss_pred eeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEE
Q 019847 91 KLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRI 170 (335)
Q Consensus 91 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 170 (335)
+.++.+.+|...|.+++.+| .++.+++++.|++|++||++..++... +. ...-..++|.|+|-++|++.....|++
T Consensus 91 kylRYF~GH~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~-l~--~~~~pi~AfDp~GLifA~~~~~~~IkL 166 (311)
T KOG1446|consen 91 KYLRYFPGHKKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGL-LN--LSGRPIAAFDPEGLIFALANGSELIKL 166 (311)
T ss_pred ceEEEcCCCCceEEEEEecC-CCCeEEecccCCeEEeeEecCCCCceE-Ee--cCCCcceeECCCCcEEEEecCCCeEEE
Confidence 99999999999999999999 779999999999999999996665333 22 223345789999999999998889999
Q ss_pred EEccCCCcccceeecc---CCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCc----EeEEEeCC
Q 019847 171 WERSKMSSSKSLHRFT---DHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQ----ICGLEWNR 243 (335)
Q Consensus 171 wd~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~----~~~~~~~~ 243 (335)
||+|.... .+..++. +.....+.+.|+|+|+.++.+. ..+.+++.|.-+|..+.++..... .....|+|
T Consensus 167 yD~Rs~dk-gPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT---~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftP 242 (311)
T KOG1446|consen 167 YDLRSFDK-GPFTTFSITDNDEAEWTDLEFSPDGKSILLST---NASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTP 242 (311)
T ss_pred EEecccCC-CCceeEccCCCCccceeeeEEcCCCCEEEEEe---CCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECC
Confidence 99997643 2333332 3467789999999999888876 689999999999998888875432 35789999
Q ss_pred CCceeeeeeeeeeecCCCeEEEEECCCCceeecccC-CCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCC
Q 019847 244 HHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQS-SNSRILDLSQSPDGLTVATAGADETIRFWEAFGP 313 (335)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~ 313 (335)
+++++++| ++||.|++|+++++..+..+.+ +.+++.++.|+|...++++++ ..+.+|=....
T Consensus 243 ds~Fvl~g------s~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~fw~p~~~ 305 (311)
T KOG1446|consen 243 DSKFVLSG------SDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS--SNLVFWLPDED 305 (311)
T ss_pred CCcEEEEe------cCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC--ceEEEEecccc
Confidence 99999988 7799999999999999999988 688999999999977776664 57888866543
No 60
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=100.00 E-value=2.4e-34 Score=224.93 Aligned_cols=277 Identities=20% Similarity=0.325 Sum_probs=238.2
Q ss_pred ceeeeecC--CceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeee
Q 019847 19 SKVIDWGR--NNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNL 96 (335)
Q Consensus 19 ~~~~~~~~--~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 96 (335)
+.+++..+ +.+++++.|..+.++|...++... .++||+..|+.+.++|+...+++++.|..|+||...........
T Consensus 222 i~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~--~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~ 299 (506)
T KOG0289|consen 222 ITALDIIPSSSKILTGGEDKTAVLFDKPSNQILA--TLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS 299 (506)
T ss_pred eeEEeecCCCCcceecCCCCceEEEecchhhhhh--hccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc
Confidence 45566555 678899999999999999988744 56799999999999999999999999999999999888888888
Q ss_pred cccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeec-CCCCEEEEEeecCCCEEEEEeCCCeEEEEEccC
Q 019847 97 EGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKA-HSGEVCGLKWSNEGNLLASGGDDNVVRIWERSK 175 (335)
Q Consensus 97 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 175 (335)
..|..+|+.+..+| .+.+|++++.|++..+.|++++..+...... ..-.+++.+|+|||.+|.+|..||.++|||+..
T Consensus 300 ~~h~~~V~~ls~h~-tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks 378 (506)
T KOG0289|consen 300 RPHEEPVTGLSLHP-TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKS 378 (506)
T ss_pred ccccccceeeeecc-CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCC
Confidence 89999999999999 9999999999999999999988876554332 234589999999999999999999999999887
Q ss_pred CCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCC--cEeEEEeCCCCceeeeeee
Q 019847 176 MSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKA--QICGLEWNRHHKEILSGHG 253 (335)
Q Consensus 176 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 253 (335)
.. ....|.+|.++|..++|+.+| +++++++ +|+.|++||+|+.+...++.... ++.++.|++.|.+++.+
T Consensus 379 ~~---~~a~Fpght~~vk~i~FsENG-Y~Lat~a--dd~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~-- 450 (506)
T KOG0289|consen 379 QT---NVAKFPGHTGPVKAISFSENG-YWLATAA--DDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIA-- 450 (506)
T ss_pred cc---ccccCCCCCCceeEEEeccCc-eEEEEEe--cCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEee--
Confidence 43 578889999999999999999 5566655 89999999999999888887654 69999999999999887
Q ss_pred eeeecCCCeEEEEEC--CCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEec
Q 019847 254 FSASGDGNKLCLWKY--PNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEA 310 (335)
Q Consensus 254 ~~~~~~~~~i~i~d~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~ 310 (335)
+.+=.|++++- .+.+.+..+..|.+..+.+.|..+.+++++++.|..++++.+
T Consensus 451 ----g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 451 ----GSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ----cceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 44555555552 256778888889989999999999999999999999988864
No 61
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=2.8e-33 Score=237.54 Aligned_cols=268 Identities=16% Similarity=0.247 Sum_probs=206.4
Q ss_pred cccceeeeecCCceEEEecCCeEEEEEecCCcee----------e-EEeecCCCCCceEEEEcC-CCCEEEEEECCCcEE
Q 019847 16 DYYSKVIDWGRNNVLAVALGPVLFLWKWENGKVK----------K-LLQVPGEDDYPTSVSWSH-DAKTLAVGYMDSKLQ 83 (335)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~i~vw~~~~~~~~----------~-~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~ 83 (335)
+..+...+|+...++++..+.....|+...+... . ...+.+|.+.|.+++|+| ++++|++|+.||+|+
T Consensus 22 ~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIk 101 (493)
T PTZ00421 22 NVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIM 101 (493)
T ss_pred ccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEE
Confidence 3445556677666777776666667765433211 1 123568999999999999 889999999999999
Q ss_pred EEeCCCc-------eeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCC
Q 019847 84 LWDAETS-------KLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEG 156 (335)
Q Consensus 84 iw~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~ 156 (335)
+||+.++ +.+..+.+|...|.+++|+|..+++|++++.|+.|++||++++.. ...+..|...|.+++|+|++
T Consensus 102 IWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~-~~~l~~h~~~V~sla~spdG 180 (493)
T PTZ00421 102 GWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKA-VEVIKCHSDQITSLEWNLDG 180 (493)
T ss_pred EEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeE-EEEEcCCCCceEEEEEECCC
Confidence 9999765 346678899999999999995568999999999999999986654 55677899999999999999
Q ss_pred CEEEEEeCCCeEEEEEccCCCcccceeeccCCCCC-eeEEEecCCCCcEEEEec-CCCCCeEEEEECCCCc-eEEEeec-
Q 019847 157 NLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGG-VKALAWSPHQVNVLATGG-GREDGCIKIWNVQKGT-CIHGIDA- 232 (335)
Q Consensus 157 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~-g~~d~~i~i~d~~~~~-~~~~~~~- 232 (335)
++|++++.|+.|++||++++ +.+..+.+|.+. ...+.|.+++..+++++. ++.|+.|++||+++.. ++.....
T Consensus 181 ~lLatgs~Dg~IrIwD~rsg---~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d 257 (493)
T PTZ00421 181 SLLCTTSKDKKLNIIDPRDG---TIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLD 257 (493)
T ss_pred CEEEEecCCCEEEEEECCCC---cEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccC
Confidence 99999999999999998874 346666777664 456789998877776652 2358999999998754 3333332
Q ss_pred -CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccC-CCCceeEeEEcCC
Q 019847 233 -KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQS-SNSRILDLSQSPD 292 (335)
Q Consensus 233 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~-~~~~i~~~~~~~~ 292 (335)
...+....|++++..++++. ..|+.|++||+.+++++..... +..++..++|.|.
T Consensus 258 ~~~~~~~~~~d~d~~~L~lgg-----kgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 258 QSSALFIPFFDEDTNLLYIGS-----KGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred CCCceEEEEEcCCCCEEEEEE-----eCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence 33466678999999887661 3599999999999888766543 4456788888885
No 62
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5e-35 Score=227.48 Aligned_cols=266 Identities=18% Similarity=0.211 Sum_probs=228.2
Q ss_pred eecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCc---eeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEe
Q 019847 53 QVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETS---KLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHD 129 (335)
Q Consensus 53 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d 129 (335)
.+..|.+.|.-+.||++|+|||+++.|.+..+|++... ++.+++.+|..+|..+.|+| +.++|++++.+..+.+||
T Consensus 219 il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSP-DdryLlaCg~~e~~~lwD 297 (519)
T KOG0293|consen 219 ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSP-DDRYLLACGFDEVLSLWD 297 (519)
T ss_pred hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECC-CCCeEEecCchHheeecc
Confidence 34679999999999999999999999999999987543 45778889999999999999 999999999999999999
Q ss_pred cccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCC-CCCeeEEEecCCCCcEEEEe
Q 019847 130 VRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDH-CGGVKALAWSPHQVNVLATG 208 (335)
Q Consensus 130 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~ 208 (335)
..++......-.++...+.+++|.|||..+++|+.|+.+..||+.... +...++- ...|.+++..+||+++++++
T Consensus 298 v~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~----~~~W~gvr~~~v~dlait~Dgk~vl~v~ 373 (519)
T KOG0293|consen 298 VDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI----LGNWEGVRDPKVHDLAITYDGKYVLLVT 373 (519)
T ss_pred CCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch----hhcccccccceeEEEEEcCCCcEEEEEe
Confidence 998887655555567889999999999999999999999999987532 3333332 24589999999999999988
Q ss_pred cCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCc--eeE
Q 019847 209 GGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSR--ILD 286 (335)
Q Consensus 209 ~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~--i~~ 286 (335)
.|..|++++.++......+..+.++++++.|.+++++++. -.+..+++||++....+..+.+|... +..
T Consensus 374 ---~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~Lvn------L~~qei~LWDl~e~~lv~kY~Ghkq~~fiIr 444 (519)
T KOG0293|consen 374 ---VDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVN------LQDQEIHLWDLEENKLVRKYFGHKQGHFIIR 444 (519)
T ss_pred ---cccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEE------cccCeeEEeecchhhHHHHhhcccccceEEE
Confidence 6999999999888777777888999999999999999877 45999999999999999999999764 222
Q ss_pred eEEc-CCCCEEEEEeCCCcEEEEecCCCCCCCCccccccccccceec
Q 019847 287 LSQS-PDGLTVATAGADETIRFWEAFGPSGDEDSVSHLAGLVSLKTS 332 (335)
Q Consensus 287 ~~~~-~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~i~~~~~~ 332 (335)
-+|- .+..++++|++|+.|+||+...++....+.+|...|..+++.
T Consensus 445 SCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswN 491 (519)
T KOG0293|consen 445 SCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWN 491 (519)
T ss_pred eccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecC
Confidence 2443 355899999999999999999999999999999988877653
No 63
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=2.1e-33 Score=256.22 Aligned_cols=264 Identities=16% Similarity=0.266 Sum_probs=211.7
Q ss_pred CCeEEEEEecCCceeeEEe---ecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCc----e----eEeeecccccce
Q 019847 35 GPVLFLWKWENGKVKKLLQ---VPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETS----K----LVRNLEGHHRRV 103 (335)
Q Consensus 35 ~~~i~vw~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~----~----~~~~~~~~~~~v 103 (335)
+|.+++|+....+...... +..|...|.+++|+|++++||+|+.|+.|+||++.+. . ....+. +...+
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v 535 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKL 535 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCce
Confidence 5667888877655433322 3458999999999999999999999999999997542 1 122233 34678
Q ss_pred eEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeec-CCCEEEEEeCCCeEEEEEccCCCcccce
Q 019847 104 ATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSN-EGNLLASGGDDNVVRIWERSKMSSSKSL 182 (335)
Q Consensus 104 ~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 182 (335)
.+++|++..+.+|++++.||.|++||+.++. ....+.+|...|++++|+| ++.+|++|+.||.|++||++... .+
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~-~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~---~~ 611 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQ-LVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV---SI 611 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEECCCCe-EEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc---EE
Confidence 9999998678899999999999999998654 4566788999999999997 78999999999999999988643 34
Q ss_pred eeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCc-eEEEeec-CCcEeEEEeCCCCceeeeeeeeeeecCC
Q 019847 183 HRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGT-CIHGIDA-KAQICGLEWNRHHKEILSGHGFSASGDG 260 (335)
Q Consensus 183 ~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (335)
..+.. ...+.++.|++....++++++ .|+.|++||+++.+ .+..+.. ...+.++.|. ++..++++ +.|
T Consensus 612 ~~~~~-~~~v~~v~~~~~~g~~latgs--~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~------s~D 681 (793)
T PLN00181 612 GTIKT-KANICCVQFPSESGRSLAFGS--ADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSS------STD 681 (793)
T ss_pred EEEec-CCCeEEEEEeCCCCCEEEEEe--CCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEE------ECC
Confidence 44443 367899999765446777776 89999999998765 3445544 4589999997 56677666 779
Q ss_pred CeEEEEECCC------CceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCC
Q 019847 261 NKLCLWKYPN------MTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGP 313 (335)
Q Consensus 261 ~~i~i~d~~~------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~ 313 (335)
+.|++||+.. ..++..+.+|...+..++|+|++.+|++|+.||.|++|+...+
T Consensus 682 ~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 682 NTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred CEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence 9999999974 3567788999999999999999999999999999999997654
No 64
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=2.4e-34 Score=229.58 Aligned_cols=291 Identities=16% Similarity=0.255 Sum_probs=233.1
Q ss_pred cccceeeeecC--CceEEEecCCeEEEEEecCCce--eeEEee-cCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCc
Q 019847 16 DYYSKVIDWGR--NNVLAVALGPVLFLWKWENGKV--KKLLQV-PGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETS 90 (335)
Q Consensus 16 ~~~~~~~~~~~--~~~~~~~~~~~i~vw~~~~~~~--~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 90 (335)
...+.++++.+ -++++++.|-.|++||+..-.. .....+ +.....|.+++|++.|..|++.+.....+|+|-...
T Consensus 167 tk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~ 246 (641)
T KOG0772|consen 167 TKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGF 246 (641)
T ss_pred ceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCc
Confidence 34455666665 5899999999999999875322 111111 234456999999999999999988999999996544
Q ss_pred eeEee------------ecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEee-----cCCCCEEEEEee
Q 019847 91 KLVRN------------LEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIK-----AHSGEVCGLKWS 153 (335)
Q Consensus 91 ~~~~~------------~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~-----~~~~~i~~~~~~ 153 (335)
+.+.. -++|...+++.+|+|.+...|++++.||++++||+...+...+.+. +..-+++.++|+
T Consensus 247 ~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~n 326 (641)
T KOG0772|consen 247 EIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWN 326 (641)
T ss_pred eeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecC
Confidence 43332 3578899999999998899999999999999999987665444433 234568999999
Q ss_pred cCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCC--CeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCc-eEEEe
Q 019847 154 NEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCG--GVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGT-CIHGI 230 (335)
Q Consensus 154 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~-~~~~~ 230 (335)
++++++|+|..||.|.+|+.........+..-..|.. .|+|+.|+++|++|+.-+ .|+++++||+++.+ ++...
T Consensus 327 rdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg---~D~tLKvWDLrq~kkpL~~~ 403 (641)
T KOG0772|consen 327 RDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRG---FDDTLKVWDLRQFKKPLNVR 403 (641)
T ss_pred CCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhcc---CCCceeeeeccccccchhhh
Confidence 9999999999999999999876544445555667877 899999999998777655 79999999999764 34333
Q ss_pred e---cCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEE
Q 019847 231 D---AKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRF 307 (335)
Q Consensus 231 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i 307 (335)
. ...+-+.++|||+.+.+++|....-+...+.+.+||..+.+.++.+.-....|..+.|+|.-+.|++|+.||.+++
T Consensus 404 tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~v 483 (641)
T KOG0772|consen 404 TGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHV 483 (641)
T ss_pred cCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEE
Confidence 2 3456788999999999999987777777889999999999999998888888999999999888999999999998
Q ss_pred Ee
Q 019847 308 WE 309 (335)
Q Consensus 308 w~ 309 (335)
|=
T Consensus 484 yY 485 (641)
T KOG0772|consen 484 YY 485 (641)
T ss_pred EE
Confidence 73
No 65
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=2.2e-34 Score=221.44 Aligned_cols=264 Identities=20% Similarity=0.355 Sum_probs=223.3
Q ss_pred CCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCC--CCEEEEeeCCCcEEEEecccC
Q 019847 56 GEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWN--GHILTSGSKDKSIINHDVRVS 133 (335)
Q Consensus 56 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~~~d~~~~ 133 (335)
-|.+.|.++... ++.+++|+.||.+++||. .|+....+.+|.++|.+++|...+ ...|++++.|.++++|.++.+
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 367777777775 789999999999999996 588899999999999999886522 236999999999999999866
Q ss_pred Cee---eEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCC----------------------CcccceeeccCC
Q 019847 134 NNV---TSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKM----------------------SSSKSLHRFTDH 188 (335)
Q Consensus 134 ~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----------------------~~~~~~~~~~~~ 188 (335)
... .....+|...|.+++..+++..+++|+.|..|.+|+.... ....++..+.+|
T Consensus 180 ~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GH 259 (423)
T KOG0313|consen 180 ENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGH 259 (423)
T ss_pred hhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccc
Confidence 542 2334589999999999999999999999999999993211 123346678899
Q ss_pred CCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEEC
Q 019847 189 CGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKY 268 (335)
Q Consensus 189 ~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~ 268 (335)
..+|.++.|++.+ .+.+++ .|.+|+.||+.++....++..+..+.++..+|..+.+++| +.|..+++||.
T Consensus 260 t~~Vs~V~w~d~~--v~yS~S--wDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~g------ssdr~irl~DP 329 (423)
T KOG0313|consen 260 TEPVSSVVWSDAT--VIYSVS--WDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASG------SSDRHIRLWDP 329 (423)
T ss_pred ccceeeEEEcCCC--ceEeec--ccceEEEEEeecccceeeeecCcceeEeecccccceeeec------CCCCceeecCC
Confidence 9999999999943 566665 9999999999999999999999999999999999999988 78999999999
Q ss_pred CCCc---eeecccCCCCceeEeEEcCCC-CEEEEEeCCCcEEEEecCCCC-CCCCccccccccccceec
Q 019847 269 PNMT---KVGELQSSNSRILDLSQSPDG-LTVATAGADETIRFWEAFGPS-GDEDSVSHLAGLVSLKTS 332 (335)
Q Consensus 269 ~~~~---~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~v~iw~~~~~~-~~~~~~~~~~~i~~~~~~ 332 (335)
+++. ..+++.+|.+.|.++.|+|.. .+|++|+.|+++++||++..+ ....+.+|.+.|.++.+.
T Consensus 330 R~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~ 398 (423)
T KOG0313|consen 330 RTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN 398 (423)
T ss_pred CCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc
Confidence 8753 356788999999999999965 568899999999999999988 667788999999887653
No 66
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.3e-33 Score=209.10 Aligned_cols=269 Identities=22% Similarity=0.336 Sum_probs=225.0
Q ss_pred ceEEEecCCeEEEEEecCC----------ceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeec
Q 019847 28 NVLAVALGPVLFLWKWENG----------KVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLE 97 (335)
Q Consensus 28 ~~~~~~~~~~i~vw~~~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 97 (335)
++++++....|.-+++.-. .+.+.+.++.|..+|++++. ++.++|+|+.|.+|+|||+.+...+..+-
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll 80 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILL 80 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhccee
Confidence 4677778887777776422 23456778899999999998 78999999999999999999999999999
Q ss_pred ccccceeEeeecCCCC--CEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccC
Q 019847 98 GHHRRVATSSWNHWNG--HILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSK 175 (335)
Q Consensus 98 ~~~~~v~~~~~~~~~~--~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 175 (335)
.|.+.|+++.|.+ .- +.|++|+.||.|.+|+...- .....+++|.+.|+.++.+|.+++-++.+.|+.++.||+-+
T Consensus 81 ~HagsitaL~F~~-~~S~shLlS~sdDG~i~iw~~~~W-~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~ 158 (362)
T KOG0294|consen 81 SHAGSITALKFYP-PLSKSHLLSGSDDGHIIIWRVGSW-ELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVR 158 (362)
T ss_pred ccccceEEEEecC-CcchhheeeecCCCcEEEEEcCCe-EEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhc
Confidence 9999999999987 43 38999999999999999855 56788999999999999999999999999999999999887
Q ss_pred CCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeee
Q 019847 176 MSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFS 255 (335)
Q Consensus 176 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (335)
+.....+. + ......+.|+|.|.++++.+ ...|-+|.+.+......+..+..+.++.|...+. +++|
T Consensus 159 Gr~a~v~~-L---~~~at~v~w~~~Gd~F~v~~----~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~-L~vG---- 225 (362)
T KOG0294|consen 159 GRVAFVLN-L---KNKATLVSWSPQGDHFVVSG----RNKIDIYQLDNASVFREIENPKRILCATFLDGSE-LLVG---- 225 (362)
T ss_pred Cccceeec-c---CCcceeeEEcCCCCEEEEEe----ccEEEEEecccHhHhhhhhccccceeeeecCCce-EEEe----
Confidence 65433222 2 22234599999998777765 5789999999988888887777788888765544 4444
Q ss_pred eecCCCeEEEEECCCCceeecccCCCCceeEeEE--cCCCCEEEEEeCCCcEEEEecCCCCC
Q 019847 256 ASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQ--SPDGLTVATAGADETIRFWEAFGPSG 315 (335)
Q Consensus 256 ~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~--~~~~~~l~~~~~dg~v~iw~~~~~~~ 315 (335)
.+++.|.+||.....+...+.+|..+|-++.+ .|++.+|+|++.||.|++||++....
T Consensus 226 --~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k 285 (362)
T KOG0294|consen 226 --GDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETK 285 (362)
T ss_pred --cCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccccc
Confidence 67999999999999999999999999999984 56789999999999999999987633
No 67
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4e-34 Score=241.85 Aligned_cols=252 Identities=16% Similarity=0.298 Sum_probs=219.8
Q ss_pred ecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccC
Q 019847 54 VPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVS 133 (335)
Q Consensus 54 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~ 133 (335)
++.....|..++|+|....++++-..|.|++||.+-+.++..|..|.++|+.+.|+| ...+|++|+.|-.|++|+..+.
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~-~qplFVSGGDDykIkVWnYk~r 83 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHP-TQPLFVSGGDDYKIKVWNYKTR 83 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecC-CCCeEEecCCccEEEEEecccc
Confidence 344567899999999999999999999999999999999999999999999999999 9999999999999999999865
Q ss_pred CeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCC
Q 019847 134 NNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGRED 213 (335)
Q Consensus 134 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d 213 (335)
+. ...+.+|...|..+.|++...+++++|.|.+|+||+..+ .+.+..+.+|+..|.|..|+|..+ ++++++ .|
T Consensus 84 rc-lftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqs---r~~iavltGHnHYVMcAqFhptED-lIVSaS--LD 156 (1202)
T KOG0292|consen 84 RC-LFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQS---RKCIAVLTGHNHYVMCAQFHPTED-LIVSAS--LD 156 (1202)
T ss_pred ee-hhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccC---CceEEEEecCceEEEeeccCCccc-eEEEec--cc
Confidence 54 666889999999999999999999999999999999655 677999999999999999999875 777766 99
Q ss_pred CeEEEEECCCCce-----------------------------EEEeec-CCcEeEEEeCCCCceeeeeeeeeeecCCCeE
Q 019847 214 GCIKIWNVQKGTC-----------------------------IHGIDA-KAQICGLEWNRHHKEILSGHGFSASGDGNKL 263 (335)
Q Consensus 214 ~~i~i~d~~~~~~-----------------------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 263 (335)
.+||+||+..-+. .+.+++ ...|+-++|+|.-..+++| ++|..|
T Consensus 157 QTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG------~DDRqV 230 (1202)
T KOG0292|consen 157 QTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSG------ADDRQV 230 (1202)
T ss_pred ceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEec------CCccee
Confidence 9999999853110 112222 3468889999999999988 899999
Q ss_pred EEEECCCCc--eeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCc
Q 019847 264 CLWKYPNMT--KVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDEDS 319 (335)
Q Consensus 264 ~i~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~ 319 (335)
++|.+..-+ .+-+..+|.+.|.++-|+|...++++.|+|+.|++||+...+.....
T Consensus 231 KlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tf 288 (1202)
T KOG0292|consen 231 KLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTF 288 (1202)
T ss_pred eEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeee
Confidence 999986544 35678899999999999999999999999999999999988776654
No 68
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-32 Score=205.16 Aligned_cols=260 Identities=18% Similarity=0.227 Sum_probs=212.7
Q ss_pred CCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeC--CCcEEEEecccC
Q 019847 56 GEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSK--DKSIINHDVRVS 133 (335)
Q Consensus 56 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--dg~i~~~d~~~~ 133 (335)
.....|.++.|+++|.++++++.|.++++||..+++.++.+..++-.+..++|.. ..+.++.++. |.+|+..++.+.
T Consensus 12 ~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth-~~~~~i~sStk~d~tIryLsl~dN 90 (311)
T KOG1446|consen 12 ETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTH-HSNTVIHSSTKEDDTIRYLSLHDN 90 (311)
T ss_pred cCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEec-CCceEEEccCCCCCceEEEEeecC
Confidence 4567899999999999999999999999999999999999998888999999988 6666666665 889999999855
Q ss_pred CeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCC
Q 019847 134 NNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGRED 213 (335)
Q Consensus 134 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d 213 (335)
+ .++.+.+|...|.+++.+|-+..+++++.|++|++||++.......+. ...-..++|+|.| .++|++. ..
T Consensus 91 k-ylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~-----~~~~pi~AfDp~G-LifA~~~--~~ 161 (311)
T KOG1446|consen 91 K-YLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLN-----LSGRPIAAFDPEG-LIFALAN--GS 161 (311)
T ss_pred c-eEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEe-----cCCCcceeECCCC-cEEEEec--CC
Confidence 5 588899999999999999988999999999999999999644322222 2223458899999 4666664 44
Q ss_pred CeEEEEECCCC--ceEEEeec----CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCce---
Q 019847 214 GCIKIWNVQKG--TCIHGIDA----KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRI--- 284 (335)
Q Consensus 214 ~~i~i~d~~~~--~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i--- 284 (335)
..|++||++.- .+..++.. ..+.+.+.|+|+|++++.+ +..+.+++.|.-+|....++..+...-
T Consensus 162 ~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLls------T~~s~~~~lDAf~G~~~~tfs~~~~~~~~~ 235 (311)
T KOG1446|consen 162 ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLS------TNASFIYLLDAFDGTVKSTFSGYPNAGNLP 235 (311)
T ss_pred CeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEE------eCCCcEEEEEccCCcEeeeEeeccCCCCcc
Confidence 49999999864 34444432 4578999999999999987 678999999999999998888765532
Q ss_pred eEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCccc-ccccccccee
Q 019847 285 LDLSQSPDGLTVATAGADETIRFWEAFGPSGDEDSVS-HLAGLVSLKT 331 (335)
Q Consensus 285 ~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~-~~~~i~~~~~ 331 (335)
.+.+|+||++++++|+.||+|.+|+++++.......+ +...+..+.|
T Consensus 236 ~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~f 283 (311)
T KOG1446|consen 236 LSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRF 283 (311)
T ss_pred eeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCcccccc
Confidence 5678999999999999999999999999888776666 3555554443
No 69
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=2.1e-34 Score=223.83 Aligned_cols=276 Identities=19% Similarity=0.307 Sum_probs=233.6
Q ss_pred cccceeeeecCC--ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeE
Q 019847 16 DYYSKVIDWGRN--NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLV 93 (335)
Q Consensus 16 ~~~~~~~~~~~~--~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~ 93 (335)
...+..+.|-++ .+.+++.|..|++|+...++....-.+.+..+.|+.+.|.++++++++++.|+.+++|++...+..
T Consensus 175 ~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~ 254 (459)
T KOG0288|consen 175 EGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLR 254 (459)
T ss_pred ccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhh
Confidence 445667888764 688899999999999988876566677788889999999999999999999999999999999999
Q ss_pred eeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEc
Q 019847 94 RNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWER 173 (335)
Q Consensus 94 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 173 (335)
.++.+|.+.|+++.|.. ....+++|+.|.+|+.||+....+....+. ...+..|..+ ...+++|..|++|++||+
T Consensus 255 ~TLsGHtdkVt~ak~~~-~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~--~S~cnDI~~~--~~~~~SgH~DkkvRfwD~ 329 (459)
T KOG0288|consen 255 HTLSGHTDKVTAAKFKL-SHSRVVSGSADRTIKLWDLQKAYCSKTVLP--GSQCNDIVCS--ISDVISGHFDKKVRFWDI 329 (459)
T ss_pred hhhcccccceeeehhhc-cccceeeccccchhhhhhhhhhheeccccc--cccccceEec--ceeeeecccccceEEEec
Confidence 99999999999999987 555599999999999999987555444332 3445566655 567899999999999998
Q ss_pred cCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec-----CCcEeEEEeCCCCcee
Q 019847 174 SKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA-----KAQICGLEWNRHHKEI 248 (335)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 248 (335)
+... .......+ +.|+++..++++..+++++ .|.++.+.|+++.+....+.. ....+.+.|||++.|+
T Consensus 330 Rs~~---~~~sv~~g-g~vtSl~ls~~g~~lLsss---RDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~Yv 402 (459)
T KOG0288|consen 330 RSAD---KTRSVPLG-GRVTSLDLSMDGLELLSSS---RDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYV 402 (459)
T ss_pred cCCc---eeeEeecC-cceeeEeeccCCeEEeeec---CCCceeeeecccccEEEEeeccccccccccceeEECCCCcee
Confidence 8754 34444433 5899999999998888875 799999999999998888764 3468899999999999
Q ss_pred eeeeeeeeecCCCeEEEEECCCCceeecccCCCC--ceeEeEEcCCCCEEEEEeCCCcEEEEe
Q 019847 249 LSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNS--RILDLSQSPDGLTVATAGADETIRFWE 309 (335)
Q Consensus 249 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~dg~v~iw~ 309 (335)
++| +.||.|+||++.++++...+..... .|++++|+|.|..|++++.++.+.+|.
T Consensus 403 aAG------S~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 403 AAG------SADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred eec------cCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 998 7899999999999999888776554 499999999999999999999999993
No 70
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.6e-32 Score=228.26 Aligned_cols=303 Identities=17% Similarity=0.273 Sum_probs=251.8
Q ss_pred cccceeeeecCC----ceEEEecCCeEEEEEecC-Cce------eeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEE
Q 019847 16 DYYSKVIDWGRN----NVLAVALGPVLFLWKWEN-GKV------KKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQL 84 (335)
Q Consensus 16 ~~~~~~~~~~~~----~~~~~~~~~~i~vw~~~~-~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 84 (335)
...+.+++|-++ ..++.-.++++..|.++. +.. ...+.+.+|...|.+++++.+...+++|+ .+.+++
T Consensus 320 ~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga-~~Siki 398 (888)
T KOG0306|consen 320 SAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGA-GESIKI 398 (888)
T ss_pred hhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecC-CCcEEE
Confidence 344566777552 234446788999998875 221 22366789999999999999988777775 568999
Q ss_pred EeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeC
Q 019847 85 WDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGD 164 (335)
Q Consensus 85 w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 164 (335)
|+..+.++++++... -+.+..|.| .+++++.|...|.+.+||+.... +....++|.+.|++++.+||+..+++|+.
T Consensus 399 Wn~~t~kciRTi~~~--y~l~~~Fvp-gd~~Iv~G~k~Gel~vfdlaS~~-l~Eti~AHdgaIWsi~~~pD~~g~vT~sa 474 (888)
T KOG0306|consen 399 WNRDTLKCIRTITCG--YILASKFVP-GDRYIVLGTKNGELQVFDLASAS-LVETIRAHDGAIWSISLSPDNKGFVTGSA 474 (888)
T ss_pred EEccCcceeEEeccc--cEEEEEecC-CCceEEEeccCCceEEEEeehhh-hhhhhhccccceeeeeecCCCCceEEecC
Confidence 999999999999753 889999999 99999999999999999998655 45667799999999999999999999999
Q ss_pred CCeEEEEEccCCCc--cc--c-ee----eccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCC-
Q 019847 165 DNVVRIWERSKMSS--SK--S-LH----RFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKA- 234 (335)
Q Consensus 165 dg~i~iwd~~~~~~--~~--~-~~----~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~- 234 (335)
|.+|++||..-... .. . +. ....-...|.|+.++||++++.++- -|+++++|-+.+.+..-.+.+|.
T Consensus 475 DktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsL---LdnTVkVyflDtlKFflsLYGHkL 551 (888)
T KOG0306|consen 475 DKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSL---LDNTVKVYFLDTLKFFLSLYGHKL 551 (888)
T ss_pred CcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEe---ccCeEEEEEecceeeeeeeccccc
Confidence 99999999653211 11 1 10 1112356799999999997555543 89999999999998887777654
Q ss_pred cEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCC
Q 019847 235 QICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPS 314 (335)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~ 314 (335)
|+.++..+|+++.+++| +.|.+|++|-++-|.+-..+-+|...|.++.|-|+...++++|.|+.|+-||-....
T Consensus 552 PV~smDIS~DSklivTg------SADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe 625 (888)
T KOG0306|consen 552 PVLSMDISPDSKLIVTG------SADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFE 625 (888)
T ss_pred ceeEEeccCCcCeEEec------cCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhh
Confidence 99999999999999998 779999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccccccceec
Q 019847 315 GDEDSVSHLAGLVSLKTS 332 (335)
Q Consensus 315 ~~~~~~~~~~~i~~~~~~ 332 (335)
....+.+|...|..+..+
T Consensus 626 ~iq~L~~H~~ev~cLav~ 643 (888)
T KOG0306|consen 626 EIQKLDGHHSEVWCLAVS 643 (888)
T ss_pred hheeeccchheeeeeEEc
Confidence 999999999988877653
No 71
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=9e-34 Score=214.59 Aligned_cols=260 Identities=19% Similarity=0.316 Sum_probs=220.3
Q ss_pred CCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeee--------cccccceeEeeecCCCCCEEEEeeCCCcEEE
Q 019847 56 GEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNL--------EGHHRRVATSSWNHWNGHILTSGSKDKSIIN 127 (335)
Q Consensus 56 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 127 (335)
+..+.+-|..|+|||+||++|+.||-|.+||..+|+..+.+ -.+..+|.|+.|+. +...+++|+.||.|++
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSR-DsEMlAsGsqDGkIKv 289 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSR-DSEMLASGSQDGKIKV 289 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecc-cHHHhhccCcCCcEEE
Confidence 34566889999999999999999999999999999876544 35778999999999 9999999999999999
Q ss_pred EecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEE
Q 019847 128 HDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLAT 207 (335)
Q Consensus 128 ~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 207 (335)
|.++++.++.+.-..|...|+++.|+.|+..+++++.|.++++.-++. ++.++.+.+|.+.|+...|.++|..++.+
T Consensus 290 Wri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKS---GK~LKEfrGHsSyvn~a~ft~dG~~iisa 366 (508)
T KOG0275|consen 290 WRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKS---GKCLKEFRGHSSYVNEATFTDDGHHIISA 366 (508)
T ss_pred EEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEecccc---chhHHHhcCccccccceEEcCCCCeEEEe
Confidence 999999987777779999999999999999999999999999999766 56788999999999999999999887776
Q ss_pred ecCCCCCeEEEEECCCCceEEEeecC---CcEeEEEeCCCCc-eeeeeeeeeeecCCCeEEEEECCCCceeecccC---C
Q 019847 208 GGGREDGCIKIWNVQKGTCIHGIDAK---AQICGLEWNRHHK-EILSGHGFSASGDGNKLCLWKYPNMTKVGELQS---S 280 (335)
Q Consensus 208 ~~g~~d~~i~i~d~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~---~ 280 (335)
+ .||+|++|+..+.+++.+++.. .++.++-.-|.+. .++++ ...++++|.++ .++.+.++.. .
T Consensus 367 S---sDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVC------Nrsntv~imn~-qGQvVrsfsSGkRE 436 (508)
T KOG0275|consen 367 S---SDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVC------NRSNTVYIMNM-QGQVVRSFSSGKRE 436 (508)
T ss_pred c---CCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEE------cCCCeEEEEec-cceEEeeeccCCcc
Confidence 6 6999999999999999988753 4678877777654 33433 56888999886 4666666643 3
Q ss_pred CCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCccccccccccc
Q 019847 281 NSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDEDSVSHLAGLVSL 329 (335)
Q Consensus 281 ~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~i~~~ 329 (335)
.+...+.+.+|.|.++.+.++|+.++.|.+..++.+..+..|..-+.++
T Consensus 437 gGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl 485 (508)
T KOG0275|consen 437 GGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGL 485 (508)
T ss_pred CCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeeccccccccc
Confidence 3456778899999999999999999999999998877766666555443
No 72
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.7e-33 Score=220.73 Aligned_cols=259 Identities=19% Similarity=0.302 Sum_probs=217.7
Q ss_pred CCCCceEEEEcCCCCE-EEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCe
Q 019847 57 EDDYPTSVSWSHDAKT-LAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNN 135 (335)
Q Consensus 57 ~~~~v~~~~~~~~~~~-l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~ 135 (335)
..+.|.+++|+|...+ +|+.+ .-.+.||+..+....+.+......+.++.|.. +|.+|++|...|.|++||+. .+.
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~-DG~LlaaGD~sG~V~vfD~k-~r~ 101 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRS-DGRLLAAGDESGHVKVFDMK-SRV 101 (487)
T ss_pred ccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeec-CCeEEEccCCcCcEEEeccc-cHH
Confidence 3467999999996543 44443 45799999999888888888889999999998 99999999999999999954 455
Q ss_pred eeEEeecCCCCEEEEEeec-CCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCC
Q 019847 136 VTSCIKAHSGEVCGLKWSN-EGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDG 214 (335)
Q Consensus 136 ~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~ 214 (335)
+.+.+.+|+.++..+.|+| ++..|++|+.|+.+++||+.+.. ....+.+|++.|.+.+|+|..+.++++|+ .||
T Consensus 102 iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~---v~~~l~~htDYVR~g~~~~~~~hivvtGs--YDg 176 (487)
T KOG0310|consen 102 ILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY---VQAELSGHTDYVRCGDISPANDHIVVTGS--YDG 176 (487)
T ss_pred HHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE---EEEEecCCcceeEeeccccCCCeEEEecC--CCc
Confidence 6778899999999999999 56788889999999999988754 35578899999999999999999999988 999
Q ss_pred eEEEEECCCC-ceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCC-ceeecccCCCCceeEeEEcCC
Q 019847 215 CIKIWNVQKG-TCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNM-TKVGELQSSNSRILDLSQSPD 292 (335)
Q Consensus 215 ~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~ 292 (335)
.|++||++.. ..+.++.++.+|..+.+-|.|..++++ ..+.+++||+.+| +.+..+..|...|+|+.+..+
T Consensus 177 ~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasA-------gGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~ 249 (487)
T KOG0310|consen 177 KVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASA-------GGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASD 249 (487)
T ss_pred eEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEc-------CCCeEEEEEecCCceehhhhhcccceEEEEEeecC
Confidence 9999999987 888999999999999999999988875 3789999999955 555556669999999999999
Q ss_pred CCEEEEEeCCCcEEEEecCCCCCCCCcccccccccccee
Q 019847 293 GLTVATAGADETIRFWEAFGPSGDEDSVSHLAGLVSLKT 331 (335)
Q Consensus 293 ~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~i~~~~~ 331 (335)
+..|++|+-|+.|++||+.+-+... .....++|.++..
T Consensus 250 ~~rLlS~sLD~~VKVfd~t~~Kvv~-s~~~~~pvLsiav 287 (487)
T KOG0310|consen 250 STRLLSGSLDRHVKVFDTTNYKVVH-SWKYPGPVLSIAV 287 (487)
T ss_pred CceEeecccccceEEEEccceEEEE-eeecccceeeEEe
Confidence 9999999999999999976654433 2234445555443
No 73
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=1.1e-33 Score=206.46 Aligned_cols=265 Identities=17% Similarity=0.322 Sum_probs=238.8
Q ss_pred EeecCCCCCceEEEEcC---CCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEE
Q 019847 52 LQVPGEDDYPTSVSWSH---DAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINH 128 (335)
Q Consensus 52 ~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~ 128 (335)
+...+|+.+|..++|+| +|-+|++++.||.-.+-+-++|..+.+|.+|.+.|++..... +....++++.|-+-++|
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~-na~~aasaaadftakvw 86 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNK-NATRAASAAADFTAKVW 86 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCc-hhhhhhhhcccchhhhh
Confidence 34578999999999986 888999999999999999999999999999999999999987 77888999999999999
Q ss_pred ecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEe
Q 019847 129 DVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATG 208 (335)
Q Consensus 129 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 208 (335)
|.-++..+... .|..-|.+++|+.|.++|++|+.+..+|+||++.++ .+...+.+|.+.|..+.|....+.++.++
T Consensus 87 ~a~tgdelhsf--~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~--App~E~~ghtg~Ir~v~wc~eD~~iLSSa 162 (334)
T KOG0278|consen 87 DAVTGDELHSF--EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPK--APPKEISGHTGGIRTVLWCHEDKCILSSA 162 (334)
T ss_pred hhhhhhhhhhh--hhhheeeeEEecccchhhhccchHHHhhhhhccCCC--CCchhhcCCCCcceeEEEeccCceEEeec
Confidence 99888775543 588889999999999999999999999999998764 45677889999999999998887777764
Q ss_pred cCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeE
Q 019847 209 GGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLS 288 (335)
Q Consensus 209 ~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~ 288 (335)
.|++||+||.+++..++++..+.+++++.++++|+++.+. ..+.|.+||..+..+++.++... .|.+.+
T Consensus 163 ---dd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia-------~gssV~Fwdaksf~~lKs~k~P~-nV~SAS 231 (334)
T KOG0278|consen 163 ---DDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIA-------YGSSVKFWDAKSFGLLKSYKMPC-NVESAS 231 (334)
T ss_pred ---cCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEe-------cCceeEEeccccccceeeccCcc-cccccc
Confidence 8999999999999999999999999999999999999875 37899999999999998887654 489999
Q ss_pred EcCCCCEEEEEeCCCcEEEEecCCCCCCCCc-cccccccccceec
Q 019847 289 QSPDGLTVATAGADETIRFWEAFGPSGDEDS-VSHLAGLVSLKTS 332 (335)
Q Consensus 289 ~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~-~~~~~~i~~~~~~ 332 (335)
++|+...+++|++|+.++.||..++...... .+|.++|.+++|+
T Consensus 232 L~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFS 276 (334)
T KOG0278|consen 232 LHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFS 276 (334)
T ss_pred ccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEEC
Confidence 9999999999999999999999999888875 8999999999886
No 74
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.2e-31 Score=200.69 Aligned_cols=277 Identities=18% Similarity=0.254 Sum_probs=216.3
Q ss_pred cccccCCCCcccccceeeeecC--CceE-EEecCCeEEEEEecC-CceeeEEeecCCCCCceEEEEcCCCCEEEEEECCC
Q 019847 5 ARILDAPYLMEDYYSKVIDWGR--NNVL-AVALGPVLFLWKWEN-GKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDS 80 (335)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~i~vw~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 80 (335)
...++.+..++| .+.+++|++ ..++ +++.|++||+|+++. +.... .....|.++|.+++|+.||..+++|+.|+
T Consensus 17 ~kd~ev~~pP~D-sIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~WsddgskVf~g~~Dk 94 (347)
T KOG0647|consen 17 NKDYEVPNPPED-SISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGSKVFSGGCDK 94 (347)
T ss_pred ccceecCCCccc-chheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCceEEeeccCC
Confidence 445556666665 678899998 3455 677999999999987 44444 34457899999999999999999999999
Q ss_pred cEEEEeCCCceeEeeecccccceeEeeecCCCCC--EEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCE
Q 019847 81 KLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGH--ILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNL 158 (335)
Q Consensus 81 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 158 (335)
.+++||+.+++ +..+..|..+|..+.|-+ ... .|++|+.|.+|+.||.+...++... .....+.++.. ...+
T Consensus 95 ~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~-~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~--~LPeRvYa~Dv--~~pm 168 (347)
T KOG0647|consen 95 QAKLWDLASGQ-VSQVAAHDAPVKTCHWVP-GMNYQCLVTGSWDKTLKFWDTRSSNPVATL--QLPERVYAADV--LYPM 168 (347)
T ss_pred ceEEEEccCCC-eeeeeecccceeEEEEec-CCCcceeEecccccceeecccCCCCeeeee--eccceeeehhc--cCce
Confidence 99999999994 667788999999999987 444 8999999999999999976654443 24556666654 3457
Q ss_pred EEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCC--ceEEEeecCC--
Q 019847 159 LASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKG--TCIHGIDAKA-- 234 (335)
Q Consensus 159 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~--~~~~~~~~~~-- 234 (335)
++++..+..|.+|+++++...... .....+-.++|++..++.+.. +.|+ .+|.+.+..+..+ +.-..++.|.
T Consensus 169 ~vVata~r~i~vynL~n~~te~k~-~~SpLk~Q~R~va~f~d~~~~-alGs--iEGrv~iq~id~~~~~~nFtFkCHR~~ 244 (347)
T KOG0647|consen 169 AVVATAERHIAVYNLENPPTEFKR-IESPLKWQTRCVACFQDKDGF-ALGS--IEGRVAIQYIDDPNPKDNFTFKCHRST 244 (347)
T ss_pred eEEEecCCcEEEEEcCCCcchhhh-hcCcccceeeEEEEEecCCce-Eeee--ecceEEEEecCCCCccCceeEEEeccC
Confidence 888899999999999765321111 111234458899999888655 5555 8999999998876 3333344322
Q ss_pred --------cEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEE
Q 019847 235 --------QICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATA 299 (335)
Q Consensus 235 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 299 (335)
.|++++|+|....+++. +.||++.+||-+....+.+.+.|..+|++.+|+.+|.+++-+
T Consensus 245 ~~~~~~VYaVNsi~FhP~hgtlvTa------GsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 245 NSVNDDVYAVNSIAFHPVHGTLVTA------GSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred CCCCCceEEecceEeecccceEEEe------cCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEE
Confidence 47889999998888876 789999999999999999999999999999999999988765
No 75
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=2.8e-31 Score=194.88 Aligned_cols=272 Identities=18% Similarity=0.330 Sum_probs=231.1
Q ss_pred cccccceeeeecCC--ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcC-CCCEEEEEECCCcEEEEeCCCc
Q 019847 14 MEDYYSKVIDWGRN--NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSH-DAKTLAVGYMDSKLQLWDAETS 90 (335)
Q Consensus 14 ~~~~~~~~~~~~~~--~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~ 90 (335)
.+...+.+++|+-+ +++.++.|+++.+|+++..+........+|.+.|-.++|+| ....+++++.|.+|++||.+.+
T Consensus 18 ~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~ 97 (313)
T KOG1407|consen 18 GHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSG 97 (313)
T ss_pred hhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccC
Confidence 34566788999863 67778899999999999887777777789999999999998 5678999999999999999999
Q ss_pred eeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEE
Q 019847 91 KLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRI 170 (335)
Q Consensus 91 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 170 (335)
++...+....+ -..+.|+| ++.+++.++.|..|.+.|.++.+.... ......+..++|+.++++++.....|+|.|
T Consensus 98 k~~~~i~~~~e-ni~i~wsp-~g~~~~~~~kdD~it~id~r~~~~~~~--~~~~~e~ne~~w~~~nd~Fflt~GlG~v~I 173 (313)
T KOG1407|consen 98 KCTARIETKGE-NINITWSP-DGEYIAVGNKDDRITFIDARTYKIVNE--EQFKFEVNEISWNNSNDLFFLTNGLGCVEI 173 (313)
T ss_pred cEEEEeeccCc-ceEEEEcC-CCCEEEEecCcccEEEEEecccceeeh--hcccceeeeeeecCCCCEEEEecCCceEEE
Confidence 99998875444 44678999 999999999999999999986654222 235567888999988888777777899999
Q ss_pred EEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec-CCcEeEEEeCCCCceee
Q 019847 171 WERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA-KAQICGLEWNRHHKEIL 249 (335)
Q Consensus 171 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 249 (335)
.... ..++++.++.|+....|+.|+|+|+ .+++|+ .|-.+.+||++..-+++.+.. .-+|..+.|+.+|++++
T Consensus 174 Lsyp---sLkpv~si~AH~snCicI~f~p~Gr-yfA~Gs--ADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lA 247 (313)
T KOG1407|consen 174 LSYP---SLKPVQSIKAHPSNCICIEFDPDGR-YFATGS--ADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLA 247 (313)
T ss_pred Eecc---ccccccccccCCcceEEEEECCCCc-eEeecc--ccceeeccChhHhhhheeeccccCceEEEEeccCcceee
Confidence 8855 4677899999999999999999996 556655 899999999998888888764 66999999999999999
Q ss_pred eeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCC
Q 019847 250 SGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGAD 302 (335)
Q Consensus 250 ~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 302 (335)
++ ++|..|-|=++++|..+..++ +.++...++|+|...+||-++.|
T Consensus 248 Sa------SEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 248 SA------SEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred cc------CccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecC
Confidence 88 899999999999999998885 56778999999999999888754
No 76
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=2.3e-32 Score=205.51 Aligned_cols=285 Identities=17% Similarity=0.328 Sum_probs=229.4
Q ss_pred ccccceeeeecCCc-eE-EEecCCeEEEEEecC------------Cce----eeEEeecCCCCCceEEEEcCCCCEEEEE
Q 019847 15 EDYYSKVIDWGRNN-VL-AVALGPVLFLWKWEN------------GKV----KKLLQVPGEDDYPTSVSWSHDAKTLAVG 76 (335)
Q Consensus 15 ~~~~~~~~~~~~~~-~~-~~~~~~~i~vw~~~~------------~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 76 (335)
+...+.+.+|+++. ++ +++.|-.|+|.|++. +.. .-+.++-.|.+.|+++.|+|....|++|
T Consensus 111 HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~ 190 (430)
T KOG0640|consen 111 HKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISG 190 (430)
T ss_pred cccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEec
Confidence 45678889999864 33 456899999999872 110 1134556799999999999999999999
Q ss_pred ECCCcEEEEeCCCceeEeeec--ccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEE--eecCCCCEEEEEe
Q 019847 77 YMDSKLQLWDAETSKLVRNLE--GHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSC--IKAHSGEVCGLKW 152 (335)
Q Consensus 77 ~~dg~i~iw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~--~~~~~~~i~~~~~ 152 (335)
+.|++|+++|+......+.++ ....+|.++.|+| .|.+|+.|..-..+++||+++.+..... -.+|.+.|+++.+
T Consensus 191 srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHP-sGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Y 269 (430)
T KOG0640|consen 191 SRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHP-SGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRY 269 (430)
T ss_pred cCCCeEEEEecccHHHHHHHHHhhccceeeeEeecC-CCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEe
Confidence 999999999997654333332 2457899999999 9999999999999999999987765433 3468999999999
Q ss_pred ecCCCEEEEEeCCCeEEEEEccCCCcccceeecc-CC-CCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEe
Q 019847 153 SNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFT-DH-CGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGI 230 (335)
Q Consensus 153 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~-~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~ 230 (335)
++.+++.++++.||.|++|| +-..+++.++. .| ...|.+..|..++++++.+| .|..+++|.+.+++++..+
T Consensus 270 s~t~~lYvTaSkDG~IklwD---GVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG---~DS~vkLWEi~t~R~l~~Y 343 (430)
T KOG0640|consen 270 SSTGSLYVTASKDGAIKLWD---GVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSG---KDSTVKLWEISTGRMLKEY 343 (430)
T ss_pred cCCccEEEEeccCCcEEeec---cccHHHHHHHHhhcCCceeeeEEEccCCeEEeecC---CcceeeeeeecCCceEEEE
Confidence 99999999999999999999 54455565553 34 34689999999999888877 7999999999999999998
Q ss_pred ecCC------cEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeeccc-CCCCceeEeEEcCCCCEEEEEeCCC
Q 019847 231 DAKA------QICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQ-SSNSRILDLSQSPDGLTVATAGADE 303 (335)
Q Consensus 231 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg 303 (335)
.+.+ .-+...|+....+++.-. ...+.+.-||.++...+..+. +|.+.+..+.-||.+.-+++++.|-
T Consensus 344 tGAg~tgrq~~rtqAvFNhtEdyVl~pD-----Eas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~ 418 (430)
T KOG0640|consen 344 TGAGTTGRQKHRTQAVFNHTEDYVLFPD-----EASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDF 418 (430)
T ss_pred ecCCcccchhhhhhhhhcCccceEEccc-----cccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccc
Confidence 7542 234566777777776542 346789999999988766554 7999999999999999999999999
Q ss_pred cEEEEecC
Q 019847 304 TIRFWEAF 311 (335)
Q Consensus 304 ~v~iw~~~ 311 (335)
.+++|--.
T Consensus 419 raRFWyrr 426 (430)
T KOG0640|consen 419 RARFWYRR 426 (430)
T ss_pred eeeeeeec
Confidence 99999644
No 77
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=2.8e-32 Score=200.08 Aligned_cols=251 Identities=21% Similarity=0.352 Sum_probs=212.6
Q ss_pred EeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEee--ecccccceeEeeecCCCCCEEEEeeCCCcEEEEe
Q 019847 52 LQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRN--LEGHHRRVATSSWNHWNGHILTSGSKDKSIINHD 129 (335)
Q Consensus 52 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d 129 (335)
..+.+|...+.+++|+.+|..|++|+.|+++.+|+++..+.... ..+|.+.|-.++|.|..+++|++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 34567899999999999999999999999999999987765544 4578899999999999999999999999999999
Q ss_pred cccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEec
Q 019847 130 VRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGG 209 (335)
Q Consensus 130 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 209 (335)
++.+++..... . .+.-.-+.|+|+|.++++++.|..|.+.|.++... .... ...-.+..++|+.++..++++.+
T Consensus 94 ~r~~k~~~~i~-~-~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~---~~~~-~~~~e~ne~~w~~~nd~Fflt~G 167 (313)
T KOG1407|consen 94 IRSGKCTARIE-T-KGENINITWSPDGEYIAVGNKDDRITFIDARTYKI---VNEE-QFKFEVNEISWNNSNDLFFLTNG 167 (313)
T ss_pred eccCcEEEEee-c-cCcceEEEEcCCCCEEEEecCcccEEEEEecccce---eehh-cccceeeeeeecCCCCEEEEecC
Confidence 99888755542 2 33334588999999999999999999999887432 2222 24456788999977776676654
Q ss_pred CCCCCeEEEEECCCCceEEEeecC-CcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeE
Q 019847 210 GREDGCIKIWNVQKGTCIHGIDAK-AQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLS 288 (335)
Q Consensus 210 g~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~ 288 (335)
.|.|.|.....-+++..++.+ ....|+.|+|+|+++++| +.|-.+.+||+...-++..+..+.-+|..+.
T Consensus 168 ---lG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~G------sADAlvSLWD~~ELiC~R~isRldwpVRTlS 238 (313)
T KOG1407|consen 168 ---LGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATG------SADALVSLWDVDELICERCISRLDWPVRTLS 238 (313)
T ss_pred ---CceEEEEeccccccccccccCCcceEEEEECCCCceEeec------cccceeeccChhHhhhheeeccccCceEEEE
Confidence 799999999999999999865 578999999999999998 7799999999999999999999999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEecCCCCCCC
Q 019847 289 QSPDGLTVATAGADETIRFWEAFGPSGDE 317 (335)
Q Consensus 289 ~~~~~~~l~~~~~dg~v~iw~~~~~~~~~ 317 (335)
||.||++||+|++|..|-|=++.++....
T Consensus 239 FS~dg~~lASaSEDh~IDIA~vetGd~~~ 267 (313)
T KOG1407|consen 239 FSHDGRMLASASEDHFIDIAEVETGDRVW 267 (313)
T ss_pred eccCcceeeccCccceEEeEecccCCeEE
Confidence 99999999999999998777776665543
No 78
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=3.8e-31 Score=224.58 Aligned_cols=249 Identities=18% Similarity=0.270 Sum_probs=189.6
Q ss_pred CCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeE-------------eeecccccceeEeeecCCCCCEEEEeeCCCcE
Q 019847 59 DYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLV-------------RNLEGHHRRVATSSWNHWNGHILTSGSKDKSI 125 (335)
Q Consensus 59 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~-------------~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 125 (335)
..|.....++++..+++++.+.....|+...+..+ ..+.+|.+.|.+++|+|.++++|++|+.|++|
T Consensus 21 ~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtI 100 (493)
T PTZ00421 21 LNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTI 100 (493)
T ss_pred eccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEE
Confidence 34555556667666666666666666664433221 13678999999999999778899999999999
Q ss_pred EEEecccCC------eeeEEeecCCCCEEEEEeecCC-CEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEec
Q 019847 126 INHDVRVSN------NVTSCIKAHSGEVCGLKWSNEG-NLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWS 198 (335)
Q Consensus 126 ~~~d~~~~~------~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 198 (335)
++||+.... .....+.+|...|.+++|+|++ ++|++++.|+.|++||+++. ..+..+..|...|.+++|+
T Consensus 101 kIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg---~~~~~l~~h~~~V~sla~s 177 (493)
T PTZ00421 101 MGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERG---KAVEVIKCHSDQITSLEWN 177 (493)
T ss_pred EEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCC---eEEEEEcCCCCceEEEEEE
Confidence 999997543 2355678899999999999975 79999999999999998864 4566778899999999999
Q ss_pred CCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCC--cEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCc-eee
Q 019847 199 PHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKA--QICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMT-KVG 275 (335)
Q Consensus 199 ~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~-~~~ 275 (335)
|++. ++++++ .|+.|++||+++++.+..+..+. ....+.|.+++..+++.. ...+.|+.|++||+++.. ++.
T Consensus 178 pdG~-lLatgs--~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G--~s~s~Dr~VklWDlr~~~~p~~ 252 (493)
T PTZ00421 178 LDGS-LLCTTS--KDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLG--CSKSQQRQIMLWDTRKMASPYS 252 (493)
T ss_pred CCCC-EEEEec--CCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEe--cCCCCCCeEEEEeCCCCCCcee
Confidence 9986 555555 89999999999999888887654 345678888887776541 112458999999998754 333
Q ss_pred cccCC-CCceeEeEEcCCCCEEEEEe-CCCcEEEEecCCCCC
Q 019847 276 ELQSS-NSRILDLSQSPDGLTVATAG-ADETIRFWEAFGPSG 315 (335)
Q Consensus 276 ~~~~~-~~~i~~~~~~~~~~~l~~~~-~dg~v~iw~~~~~~~ 315 (335)
....+ ...+....|++++.+|++++ .||.|++||+..+..
T Consensus 253 ~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~ 294 (493)
T PTZ00421 253 TVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERL 294 (493)
T ss_pred EeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCce
Confidence 33323 23455667999999999887 599999999987654
No 79
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=1.2e-31 Score=231.73 Aligned_cols=293 Identities=21% Similarity=0.310 Sum_probs=229.8
Q ss_pred ccccceeeeecCC--ceEEEe--cCCeEEEEEecCC----------ceeeEEeecCCCCCceEEEEcCCCCEEEEEECCC
Q 019847 15 EDYYSKVIDWGRN--NVLAVA--LGPVLFLWKWENG----------KVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDS 80 (335)
Q Consensus 15 ~~~~~~~~~~~~~--~~~~~~--~~~~i~vw~~~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 80 (335)
++..+.+++.+++ .+++++ .|+.++||+.+.- ....+.+...|.+.|+|+.|+|||++||+|+.|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~ 91 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR 91 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence 3455788998886 455556 6788899997531 1223445678999999999999999999999999
Q ss_pred cEEEEeCCC------------------ceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeec
Q 019847 81 KLQLWDAET------------------SKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKA 142 (335)
Q Consensus 81 ~i~iw~~~~------------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~ 142 (335)
.|.||+... .+.+..+.+|...|..++|+| ++.+|++++.|++|.+||..+. .....+.+
T Consensus 92 ~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn~~tF-~~~~vl~~ 169 (942)
T KOG0973|consen 92 LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWNAKTF-ELLKVLRG 169 (942)
T ss_pred eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEEccccc-eeeeeeec
Confidence 999998762 135677889999999999999 9999999999999999999988 66888999
Q ss_pred CCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccC---CCCCeeEEEecCCCCcEEEEecCCCC---CeE
Q 019847 143 HSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTD---HCGGVKALAWSPHQVNVLATGGGRED---GCI 216 (335)
Q Consensus 143 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~g~~d---~~i 216 (335)
|.+.|..+.|.|-|++||+-+.|++|++|++.+....+.+..... ....+..+.|+|||+++.+.-+ .+ ..+
T Consensus 170 H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA--~n~~~~~~ 247 (942)
T KOG0973|consen 170 HQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNA--VNGGKSTI 247 (942)
T ss_pred ccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhh--ccCCccee
Confidence 999999999999999999999999999999766333222222211 2334789999999987766543 33 367
Q ss_pred EEEECCCCceEEEee-cCCcEeEEEeCCCC-----c---e-----eeeeeeeeeecCCCeEEEEECCCCceeecccC-CC
Q 019847 217 KIWNVQKGTCIHGID-AKAQICGLEWNRHH-----K---E-----ILSGHGFSASGDGNKLCLWKYPNMTKVGELQS-SN 281 (335)
Q Consensus 217 ~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~-----~---~-----~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~-~~ 281 (335)
.|.+-.+.+.-..+- |..++.++.|+|.- + . .+ ...++++.|+.|.||.....+++..+.. ..
T Consensus 248 ~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y--~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~ 325 (942)
T KOG0973|consen 248 AIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYY--CIAAVGSQDRSLSVWNTALPRPLFVIHNLFN 325 (942)
T ss_pred EEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcce--EEEEEecCCccEEEEecCCCCchhhhhhhhc
Confidence 788876666555554 45689999998731 1 0 01 1144569999999999988888766543 45
Q ss_pred CceeEeEEcCCCCEEEEEeCCCcEEEEecCCC
Q 019847 282 SRILDLSQSPDGLTVATAGADETIRFWEAFGP 313 (335)
Q Consensus 282 ~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~ 313 (335)
..|.+++|+|||..|+++|.||+|.+..++..
T Consensus 326 ~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 326 KSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred CceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 57999999999999999999999999998864
No 80
>PTZ00420 coronin; Provisional
Probab=100.00 E-value=2.1e-30 Score=221.21 Aligned_cols=246 Identities=17% Similarity=0.233 Sum_probs=184.2
Q ss_pred cCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCC-CCEEEEEECCCcEEEEeCCCce--------eEeeeccccccee
Q 019847 34 LGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHD-AKTLAVGYMDSKLQLWDAETSK--------LVRNLEGHHRRVA 104 (335)
Q Consensus 34 ~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iw~~~~~~--------~~~~~~~~~~~v~ 104 (335)
..+.|++|+..... ....+.+|...|.+++|+|+ +++|++|+.||.|+|||+.++. .+..+.+|...|.
T Consensus 52 ~~gvI~L~~~~r~~--~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 52 LIGAIRLENQMRKP--PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred ceeEEEeeecCCCc--eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 45678899876543 45677899999999999996 7899999999999999997642 3345778999999
Q ss_pred EeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceee
Q 019847 105 TSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHR 184 (335)
Q Consensus 105 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 184 (335)
+++|+|....+|++++.|+.|++||++++..... +. |...|.+++|+|+|++|++++.|+.|++||++++ ..+..
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~-i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg---~~i~t 204 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQ-IN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQ---EIASS 204 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEE-Ee-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCC---cEEEE
Confidence 9999994444568999999999999997765433 33 6678999999999999999999999999998874 44667
Q ss_pred ccCCCCCeeEE-----EecCCCCcEEEEecC-CCCCeEEEEECCC-CceEEEeecCCc---EeEEEeCCCCceeeeeeee
Q 019847 185 FTDHCGGVKAL-----AWSPHQVNVLATGGG-REDGCIKIWNVQK-GTCIHGIDAKAQ---ICGLEWNRHHKEILSGHGF 254 (335)
Q Consensus 185 ~~~~~~~v~~~-----~~~~~~~~~~~~~~g-~~d~~i~i~d~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 254 (335)
+.+|.+.+... .|++++.++++++.. ..++.|++||+++ ++++..+..+.. +......+++.++++|
T Consensus 205 l~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsG--- 281 (568)
T PTZ00420 205 FHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIG--- 281 (568)
T ss_pred EecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEE---
Confidence 77888765432 345788777777640 0124899999995 566666554432 2223334457777666
Q ss_pred eeecCCCeEEEEECCCCceeeccc--CCCCceeEeEEcCCC
Q 019847 255 SASGDGNKLCLWKYPNMTKVGELQ--SSNSRILDLSQSPDG 293 (335)
Q Consensus 255 ~~~~~~~~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~~ 293 (335)
..|+.|++|++..+.. ..+. .+..++.+++|.|..
T Consensus 282 ---kGD~tIr~~e~~~~~~-~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 282 ---KGDGNCRYYQHSLGSI-RKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred ---ECCCeEEEEEccCCcE-EeecccccCCCccceEEcccc
Confidence 6799999999977643 2222 245678899999964
No 81
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=100.00 E-value=9.4e-32 Score=211.63 Aligned_cols=250 Identities=22% Similarity=0.423 Sum_probs=208.8
Q ss_pred cCCCCCceEEEEcCCC-CEEEEEECCCcEEEEeCCCce----------eEeeecccccceeEeeecCCCCCEEEEeeCCC
Q 019847 55 PGEDDYPTSVSWSHDA-KTLAVGYMDSKLQLWDAETSK----------LVRNLEGHHRRVATSSWNHWNGHILTSGSKDK 123 (335)
Q Consensus 55 ~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~----------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 123 (335)
-.|.+.|+.+.+-|+. ..+|+++..+.+.|||..+.. +-..+.+|...-..++|++.....|++++.|+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence 3588899999999965 566777888999999986431 12267788888888999998899999999999
Q ss_pred cEEEEecccCCe------eeEEeecCCCCEEEEEeec-CCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEE
Q 019847 124 SIINHDVRVSNN------VTSCIKAHSGEVCGLKWSN-EGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALA 196 (335)
Q Consensus 124 ~i~~~d~~~~~~------~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 196 (335)
.|++||+..... ....+.+|...|..++|++ +..+|++++.|+.+.|||+|.. ..+..+...+|.+++.|++
T Consensus 201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~-~~~~~~~~~ah~~~vn~~~ 279 (422)
T KOG0264|consen 201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN-TSKPSHSVKAHSAEVNCVA 279 (422)
T ss_pred cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC-CCCCcccccccCCceeEEE
Confidence 999999975443 3566789999999999999 6779999999999999999974 5566777889999999999
Q ss_pred ecCCCCcEEEEecCCCCCeEEEEECCCC-ceEEEeec-CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCC---
Q 019847 197 WSPHQVNVLATGGGREDGCIKIWNVQKG-TCIHGIDA-KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNM--- 271 (335)
Q Consensus 197 ~~~~~~~~~~~~~g~~d~~i~i~d~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~--- 271 (335)
|+|.+.+++++++ .|++|++||+|+. +++..++. ...+.++.|+|....+++. ++.|+.+.+||+..-
T Consensus 280 fnp~~~~ilAT~S--~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLAS-----Sg~D~rl~vWDls~ig~e 352 (422)
T KOG0264|consen 280 FNPFNEFILATGS--ADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLAS-----SGTDRRLNVWDLSRIGEE 352 (422)
T ss_pred eCCCCCceEEecc--CCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEe-----cccCCcEEEEeccccccc
Confidence 9999999999988 9999999999985 45666665 4589999999999887554 478999999998642
Q ss_pred -----------ceeecccCCCCceeEeEEcCCCCE-EEEEeCCCcEEEEecCC
Q 019847 272 -----------TKVGELQSSNSRILDLSQSPDGLT-VATAGADETIRFWEAFG 312 (335)
Q Consensus 272 -----------~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~dg~v~iw~~~~ 312 (335)
+++..-.+|...|..+.|+|+..+ +++.++|+.++||++..
T Consensus 353 q~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 353 QSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred cChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 234556789999999999998754 66788999999999884
No 82
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=2.9e-30 Score=193.90 Aligned_cols=272 Identities=17% Similarity=0.219 Sum_probs=214.3
Q ss_pred cCCCCcccccceeeeecC--CceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEe
Q 019847 9 DAPYLMEDYYSKVIDWGR--NNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWD 86 (335)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~ 86 (335)
+.+..|.+ .+..+.|++ +.+++++.||.+++|++...++...+ .|..++.+++|.+ ...+++|+.||.|+.+|
T Consensus 7 ~l~npP~d-~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~---~~~~plL~c~F~d-~~~~~~G~~dg~vr~~D 81 (323)
T KOG1036|consen 7 ELENPPED-GISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF---KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYD 81 (323)
T ss_pred ccCCCChh-ceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe---ecCCceeeeeccC-CceEEEeccCceEEEEE
Confidence 34444444 466777775 67999999999999999988654444 4788999999987 45799999999999999
Q ss_pred CCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCC
Q 019847 87 AETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDN 166 (335)
Q Consensus 87 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 166 (335)
+.+++.. .+..|..++.++.+++ ....+++|+.|++|++||.+.... ...+ .....|.++..+ ++.|++|..|.
T Consensus 82 ln~~~~~-~igth~~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~R~~~~-~~~~-d~~kkVy~~~v~--g~~LvVg~~~r 155 (323)
T KOG1036|consen 82 LNTGNED-QIGTHDEGIRCIEYSY-EVGCVISGSWDKTIKFWDPRNKVV-VGTF-DQGKKVYCMDVS--GNRLVVGTSDR 155 (323)
T ss_pred ecCCcce-eeccCCCceEEEEeec-cCCeEEEcccCccEEEEecccccc-cccc-ccCceEEEEecc--CCEEEEeecCc
Confidence 9988754 4556999999999998 888999999999999999985332 2222 234478887764 66899999999
Q ss_pred eEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCC----ceEEEeecC---------
Q 019847 167 VVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKG----TCIHGIDAK--------- 233 (335)
Q Consensus 167 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~----~~~~~~~~~--------- 233 (335)
.+.+||+++........ -..-+-.+.++++.|++.-++++. .||.|.+=.+... +....++.|
T Consensus 156 ~v~iyDLRn~~~~~q~r-eS~lkyqtR~v~~~pn~eGy~~sS---ieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~ 231 (323)
T KOG1036|consen 156 KVLIYDLRNLDEPFQRR-ESSLKYQTRCVALVPNGEGYVVSS---IEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEI 231 (323)
T ss_pred eEEEEEcccccchhhhc-cccceeEEEEEEEecCCCceEEEe---ecceEEEEccCCchHHhhhceeEEeeecccCCceE
Confidence 99999999876544222 223456789999999776666644 7999988766655 222333322
Q ss_pred -CcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeC
Q 019847 234 -AQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGA 301 (335)
Q Consensus 234 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 301 (335)
.+|++++|+|-...+++| +.||.|.+||+.+.+.+..+......|.+++|+.+|..||+++.
T Consensus 232 ~yPVNai~Fhp~~~tfaTg------GsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 232 IYPVNAIAFHPIHGTFATG------GSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred EEEeceeEeccccceEEec------CCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 379999999999989888 88999999999999999999888888999999999999999874
No 83
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=1.4e-31 Score=221.96 Aligned_cols=280 Identities=16% Similarity=0.236 Sum_probs=230.5
Q ss_pred ecCCceEEEecCCeEEEEEecCCceeeEE----------e-------------------------ecCCCCCceEEEEcC
Q 019847 24 WGRNNVLAVALGPVLFLWKWENGKVKKLL----------Q-------------------------VPGEDDYPTSVSWSH 68 (335)
Q Consensus 24 ~~~~~~~~~~~~~~i~vw~~~~~~~~~~~----------~-------------------------~~~~~~~v~~~~~~~ 68 (335)
.-++-+++++.|++|++|+++.+.....+ + .-+....+.+++.+|
T Consensus 390 lp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp 469 (1080)
T KOG1408|consen 390 LPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSP 469 (1080)
T ss_pred CCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECC
Confidence 34456889999999999998763211110 0 001234689999999
Q ss_pred CCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCC--CCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCC
Q 019847 69 DAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHW--NGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGE 146 (335)
Q Consensus 69 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~ 146 (335)
+|++||+|..-|+++||++...+....++.|+..|.|+.|+.. ..++|++++.|..|.+||....-.+.+.+.+|...
T Consensus 470 ~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSss 549 (1080)
T KOG1408|consen 470 DGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSS 549 (1080)
T ss_pred CcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccc
Confidence 9999999999999999999999999999999999999999853 35789999999999999998888888999999999
Q ss_pred EEEEEeecCC--CEEEEEeCCCeEEEEEccCCCcccce--eeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECC
Q 019847 147 VCGLKWSNEG--NLLASGGDDNVVRIWERSKMSSSKSL--HRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQ 222 (335)
Q Consensus 147 i~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~ 222 (335)
|+++.|..+| ..+++++.|+.|.+--.+........ .+.......++.++..|..++++..+ .|..|+|||++
T Consensus 550 ITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~c---QDrnirif~i~ 626 (1080)
T KOG1408|consen 550 ITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVC---QDRNIRIFDIE 626 (1080)
T ss_pred eeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEe---cccceEEEecc
Confidence 9999998876 78999999988765433322211111 11111245688999999997666655 89999999999
Q ss_pred CCceEEEeec----CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEE
Q 019847 223 KGTCIHGIDA----KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVAT 298 (335)
Q Consensus 223 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 298 (335)
+++..+.++. .+....+...|.|.|+++. ..|.++.++|..+++++.++.+|...|+.+.|.+|-+.|++
T Consensus 627 sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atS------csdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlIS 700 (1080)
T KOG1408|consen 627 SGKQVKSFKGSRDHEGDLIKVILDPSGIYLATS------CSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLIS 700 (1080)
T ss_pred ccceeeeecccccCCCceEEEEECCCccEEEEe------ecCCceEEEEeccchhhhhhcCcchheeeeeecccchhhee
Confidence 9999999975 3568889999999999988 66999999999999999999999999999999999999999
Q ss_pred EeCCCcEEEEecCC
Q 019847 299 AGADETIRFWEAFG 312 (335)
Q Consensus 299 ~~~dg~v~iw~~~~ 312 (335)
.+.||.|.||.+..
T Consensus 701 vsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 701 VSGDGCIFVWKLPL 714 (1080)
T ss_pred ecCCceEEEEECch
Confidence 99999999999863
No 84
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.4e-31 Score=199.45 Aligned_cols=272 Identities=17% Similarity=0.301 Sum_probs=231.0
Q ss_pred CceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeC------CC-----------
Q 019847 27 NNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDA------ET----------- 89 (335)
Q Consensus 27 ~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~------~~----------- 89 (335)
+-+-+++.|.+-+||.++++.+ +.++.+|.+.|++++|++.+.++++++.|++..||.. ..
T Consensus 161 pi~gtASADhTA~iWs~Esg~C--L~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEe 238 (481)
T KOG0300|consen 161 PICGTASADHTARIWSLESGAC--LATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEE 238 (481)
T ss_pred cceeecccccceeEEeeccccc--eeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchh
Confidence 3455567899999999999987 5567799999999999999999999999999999961 10
Q ss_pred -----------------------ceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCC
Q 019847 90 -----------------------SKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGE 146 (335)
Q Consensus 90 -----------------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~ 146 (335)
..++..+.+|...|.+..|.. .++.+++++.|.+..+||++++. +...+.+|...
T Consensus 239 E~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~-gg~Q~vTaSWDRTAnlwDVEtge-~v~~LtGHd~E 316 (481)
T KOG0300|consen 239 EEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA-GGQQMVTASWDRTANLWDVETGE-VVNILTGHDSE 316 (481)
T ss_pred hhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc-CcceeeeeeccccceeeeeccCc-eeccccCcchh
Confidence 014456788999999999998 99999999999999999999766 47789999999
Q ss_pred EEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCC-c
Q 019847 147 VCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKG-T 225 (335)
Q Consensus 147 i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-~ 225 (335)
.+.++-+|..+++++++.|.+.++||.+. ....+..|++|...|++..|..+. -+++++ .|.+|++||+++. .
T Consensus 317 LtHcstHptQrLVvTsSrDtTFRLWDFRe--aI~sV~VFQGHtdtVTS~vF~~dd--~vVSgS--DDrTvKvWdLrNMRs 390 (481)
T KOG0300|consen 317 LTHCSTHPTQRLVVTSSRDTTFRLWDFRE--AIQSVAVFQGHTDTVTSVVFNTDD--RVVSGS--DDRTVKVWDLRNMRS 390 (481)
T ss_pred ccccccCCcceEEEEeccCceeEeccchh--hcceeeeecccccceeEEEEecCC--ceeecC--CCceEEEeeeccccC
Confidence 99999999999999999999999999984 356788899999999999999876 355554 9999999999986 4
Q ss_pred eEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCcee----ecccCCCCceeEeEEcCCC--CEEEEE
Q 019847 226 CIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKV----GELQSSNSRILDLSQSPDG--LTVATA 299 (335)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~----~~~~~~~~~i~~~~~~~~~--~~l~~~ 299 (335)
++.++....+++.++.+..++.++.- -++..|++||+...... ..-++|...|+|.+|..+. .-|+++
T Consensus 391 plATIRtdS~~NRvavs~g~~iIAiP------hDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftc 464 (481)
T KOG0300|consen 391 PLATIRTDSPANRVAVSKGHPIIAIP------HDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTC 464 (481)
T ss_pred cceeeecCCccceeEeecCCceEEec------cCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccc
Confidence 68888999999999999998888876 56899999998654432 2335888999999998764 348899
Q ss_pred eCCCcEEEEecCCCC
Q 019847 300 GADETIRFWEAFGPS 314 (335)
Q Consensus 300 ~~dg~v~iw~~~~~~ 314 (335)
+-|..+.=|++..+.
T Consensus 465 GFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 465 GFDRMVAGWKINTPT 479 (481)
T ss_pred cccceeeeeEecccC
Confidence 999999999988764
No 85
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=8.9e-31 Score=196.62 Aligned_cols=257 Identities=17% Similarity=0.233 Sum_probs=208.8
Q ss_pred CCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCee
Q 019847 57 EDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNV 136 (335)
Q Consensus 57 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~ 136 (335)
..+.|..+.|+|.+..|+++++||++++||+...++...++ |..++.+++|. +...+++|+.||.|+.+|+.++..
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~--d~~~~~~G~~dg~vr~~Dln~~~~- 87 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFA--DESTIVTGGLDGQVRRYDLNTGNE- 87 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeecc--CCceEEEeccCceEEEEEecCCcc-
Confidence 36789999999999999999999999999999887766666 89999999998 477899999999999999987663
Q ss_pred eEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeE
Q 019847 137 TSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCI 216 (335)
Q Consensus 137 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i 216 (335)
..+..|..+|.++.+++....+++|+.|++|++||.+.. .....+. ....|.++....+ .|++.+ .|..+
T Consensus 88 -~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~---~~~~~~d-~~kkVy~~~v~g~--~LvVg~---~~r~v 157 (323)
T KOG1036|consen 88 -DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNK---VVVGTFD-QGKKVYCMDVSGN--RLVVGT---SDRKV 157 (323)
T ss_pred -eeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccc---ccccccc-cCceEEEEeccCC--EEEEee---cCceE
Confidence 446679999999999998889999999999999998852 2233332 3347888877643 455533 79999
Q ss_pred EEEECCCCceEEEe---ecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCC----ceeecccCCCC-------
Q 019847 217 KIWNVQKGTCIHGI---DAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNM----TKVGELQSSNS------- 282 (335)
Q Consensus 217 ~i~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~----~~~~~~~~~~~------- 282 (335)
.+||+++....... ..+..+.++++.|++.-.+++ +-+|.|.+=.++.. +....++.|..
T Consensus 158 ~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~s------SieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~ 231 (323)
T KOG1036|consen 158 LIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVS------SIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEI 231 (323)
T ss_pred EEEEcccccchhhhccccceeEEEEEEEecCCCceEEE------eecceEEEEccCCchHHhhhceeEEeeecccCCceE
Confidence 99999987654432 235678999999977766655 67999998777665 33445666642
Q ss_pred --ceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCccccccccccceecc
Q 019847 283 --RILDLSQSPDGLTVATAGADETIRFWEAFGPSGDEDSVSHLAGLVSLKTSV 333 (335)
Q Consensus 283 --~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~i~~~~~~~ 333 (335)
+|++|+|+|-...|+||+.||.|.+||+...+...++......|.+++|+.
T Consensus 232 ~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~ 284 (323)
T KOG1036|consen 232 IYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSM 284 (323)
T ss_pred EEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEecc
Confidence 699999999999999999999999999999998888877778888888864
No 86
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=100.00 E-value=9.5e-31 Score=215.95 Aligned_cols=275 Identities=18% Similarity=0.337 Sum_probs=228.7
Q ss_pred ccccceeeeecCCc-eEEEecCCeEEEEEecCCceeeEEeecCCCCCceE-EEEcC-CCCEEEEEECCCcEEEEeCCCce
Q 019847 15 EDYYSKVIDWGRNN-VLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTS-VSWSH-DAKTLAVGYMDSKLQLWDAETSK 91 (335)
Q Consensus 15 ~~~~~~~~~~~~~~-~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~-~~~~~-~~~~l~~~~~dg~i~iw~~~~~~ 91 (335)
++..+..++..++. +++++.|+++++|+-..++......+.+|.+.|.+ +++-+ ++..+++|+.|+.|.+|...+..
T Consensus 13 H~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~ 92 (745)
T KOG0301|consen 13 HKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAE 92 (745)
T ss_pred CccchheeEecCCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCC
Confidence 33345666666654 77788899999999888888777778888888877 88876 55679999999999999999999
Q ss_pred eEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEE
Q 019847 92 LVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIW 171 (335)
Q Consensus 92 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw 171 (335)
+...+++|...|.++.-.. ++. +++|+.|.++++|.... +...+.+|...|++++.-|++ .+++|+.|.+|++|
T Consensus 93 P~~~LkgH~snVC~ls~~~-~~~-~iSgSWD~TakvW~~~~---l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklW 166 (745)
T KOG0301|consen 93 PLYTLKGHKSNVCSLSIGE-DGT-LISGSWDSTAKVWRIGE---LVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLW 166 (745)
T ss_pred chhhhhccccceeeeecCC-cCc-eEecccccceEEecchh---hhcccCCcchheeeeeecCCC-cEEeccCcceeeec
Confidence 9999999999999999765 454 99999999999998643 345588999999999999987 89999999999999
Q ss_pred EccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec-CCcEeEEEeCCCCceeee
Q 019847 172 ERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA-KAQICGLEWNRHHKEILS 250 (335)
Q Consensus 172 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 250 (335)
.- .+.++++.+|.+.|+.+++-|++. ++.++ .||.|++|++ +|+++..+.. ..-+.++...+++..+++
T Consensus 167 k~-----~~~l~tf~gHtD~VRgL~vl~~~~-flScs---NDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs 236 (745)
T KOG0301|consen 167 KG-----GTLLKTFSGHTDCVRGLAVLDDSH-FLSCS---NDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVS 236 (745)
T ss_pred cC-----CchhhhhccchhheeeeEEecCCC-eEeec---CCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEE
Confidence 83 356889999999999999999873 55554 7999999999 5666666654 457899997777777776
Q ss_pred eeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCC
Q 019847 251 GHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPS 314 (335)
Q Consensus 251 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~ 314 (335)
. ++|++++||+.. ++.+.+.-....|.++.+-++|. +++|+.||.||||......
T Consensus 237 ~------gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~R 291 (745)
T KOG0301|consen 237 T------GEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDKDR 291 (745)
T ss_pred e------cCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEecccc
Confidence 6 899999999976 67777776666899999998886 6789999999999887543
No 87
>PTZ00420 coronin; Provisional
Probab=100.00 E-value=9.6e-30 Score=217.16 Aligned_cols=229 Identities=16% Similarity=0.233 Sum_probs=174.9
Q ss_pred EECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCe-------eeEEeecCCCCEE
Q 019847 76 GYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNN-------VTSCIKAHSGEVC 148 (335)
Q Consensus 76 ~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~-------~~~~~~~~~~~i~ 148 (335)
|+.++.|++|+......+..+.+|...|.+++|+|.++++|++|+.||.|++||+.+... ....+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 556889999998888888889999999999999995589999999999999999975432 2345678999999
Q ss_pred EEEeecCCCE-EEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceE
Q 019847 149 GLKWSNEGNL-LASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCI 227 (335)
Q Consensus 149 ~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~ 227 (335)
+++|+|++.. |++++.|+.|++||+++... ...+. |...|.+++|+|+|..+ ++++ .|+.|++||+++++.+
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~---~~~i~-~~~~V~SlswspdG~lL-at~s--~D~~IrIwD~Rsg~~i 202 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKR---AFQIN-MPKKLSSLKWNIKGNLL-SGTC--VGKHMHIIDPRKQEIA 202 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcE---EEEEe-cCCcEEEEEECCCCCEE-EEEe--cCCEEEEEECCCCcEE
Confidence 9999998775 57899999999999987542 33333 56789999999999754 5554 7999999999999998
Q ss_pred EEeecCCc-E-----eEEEeCCCCceeeeeeeeeeecCCCeEEEEECCC-Cceeeccc--CCCCceeEeEEcCCCCEEEE
Q 019847 228 HGIDAKAQ-I-----CGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPN-MTKVGELQ--SSNSRILDLSQSPDGLTVAT 298 (335)
Q Consensus 228 ~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~-~~~~~~~~--~~~~~i~~~~~~~~~~~l~~ 298 (335)
..+..+.. + ....|++++.+++++.. ....++.|++||+++ .+++..+. .+.+.+......+++.++++
T Consensus 203 ~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~--d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~ls 280 (568)
T PTZ00420 203 SSFHIHDGGKNTKNIWIDGLGGDDNYILSTGF--SKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLI 280 (568)
T ss_pred EEEecccCCceeEEEEeeeEcCCCCEEEEEEc--CCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEE
Confidence 88876542 2 22345688888877521 001125899999985 55555443 23333334444556889999
Q ss_pred EeCCCcEEEEecCCC
Q 019847 299 AGADETIRFWEAFGP 313 (335)
Q Consensus 299 ~~~dg~v~iw~~~~~ 313 (335)
|+.|+.|++|++..+
T Consensus 281 GkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 281 GKGDGNCRYYQHSLG 295 (568)
T ss_pred EECCCeEEEEEccCC
Confidence 999999999999765
No 88
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=3e-30 Score=217.13 Aligned_cols=301 Identities=20% Similarity=0.232 Sum_probs=245.5
Q ss_pred ceeeeecC---CceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEee
Q 019847 19 SKVIDWGR---NNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRN 95 (335)
Q Consensus 19 ~~~~~~~~---~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 95 (335)
++++.--+ |.++.++.+|.+.+||+++++. +++++++.+.|+++.=+|--..+|.|..+|+|.+++++.++.+.+
T Consensus 162 Ital~HP~TYLNKIvvGs~~G~lql~Nvrt~K~--v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~s 239 (910)
T KOG1539|consen 162 ITALLHPSTYLNKIVVGSSQGRLQLWNVRTGKV--VYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMS 239 (910)
T ss_pred eeeEecchhheeeEEEeecCCcEEEEEeccCcE--EEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEE
Confidence 66665333 6789999999999999999987 556678889999999999999999999999999999999999999
Q ss_pred ecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCe----------------------------------------
Q 019847 96 LEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNN---------------------------------------- 135 (335)
Q Consensus 96 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~---------------------------------------- 135 (335)
++...+.|++++|..+...++++|+..|.+.+||++..+.
T Consensus 240 Fk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~ 319 (910)
T KOG1539|consen 240 FKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDS 319 (910)
T ss_pred EEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeC
Confidence 9955699999999985556777888889999999832210
Q ss_pred --------------------------------------------------------------------------------
Q 019847 136 -------------------------------------------------------------------------------- 135 (335)
Q Consensus 136 -------------------------------------------------------------------------------- 135 (335)
T Consensus 320 ~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~ 399 (910)
T KOG1539|consen 320 GDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIV 399 (910)
T ss_pred CCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcce
Confidence
Q ss_pred --------------e---------e------------EE-----eecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccC
Q 019847 136 --------------V---------T------------SC-----IKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSK 175 (335)
Q Consensus 136 --------------~---------~------------~~-----~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 175 (335)
+ . .. ++.....+++++.++.|++.+.|+..|.|-+|++..
T Consensus 400 ~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQS 479 (910)
T KOG1539|consen 400 EFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQS 479 (910)
T ss_pred eeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEccc
Confidence 0 0 00 001125677888889999999999999999999887
Q ss_pred CCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeee
Q 019847 176 MSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFS 255 (335)
Q Consensus 176 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (335)
+-.......-..|.++|+.++...-++.+++++ .+|.+.+||..+...+..++....+..+..+.....++.+
T Consensus 480 Gi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~---~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~---- 552 (910)
T KOG1539|consen 480 GIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAG---ADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIA---- 552 (910)
T ss_pred CeeecccccCccccCceeEEEecCCCceEEEcc---CcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhh----
Confidence 544333333357999999999998886555554 7999999999999999999999999999998888877766
Q ss_pred eecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCcccccccccccee
Q 019847 256 ASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDEDSVSHLAGLVSLKT 331 (335)
Q Consensus 256 ~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~i~~~~~ 331 (335)
.+|-.|+++|..+.+.++.+.+|...|++++|||||++|++++.|++|++||+.++...... .-.....++++
T Consensus 553 --~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~-~vd~~~~sls~ 625 (910)
T KOG1539|consen 553 --LDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGL-LVDSPCTSLSF 625 (910)
T ss_pred --cCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeE-ecCCcceeeEE
Confidence 67999999999999999999999999999999999999999999999999999988765432 23333444443
No 89
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=1.8e-32 Score=213.11 Aligned_cols=264 Identities=17% Similarity=0.300 Sum_probs=221.2
Q ss_pred EeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCce--eEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEe
Q 019847 52 LQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSK--LVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHD 129 (335)
Q Consensus 52 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d 129 (335)
+.+..|...+..+.|-++...|++|+.|..|++|++..++ .+..+.+..++|+.+.|.+ ++..+++++.|+.+++|+
T Consensus 169 ~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~-~~~~~iAas~d~~~r~Wn 247 (459)
T KOG0288|consen 169 FVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDS-DNKHVIAASNDKNLRLWN 247 (459)
T ss_pred hhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecC-CCceEEeecCCCceeeee
Confidence 4456789999999999998999999999999999987665 6777888889999999999 999999999999999999
Q ss_pred cccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEec
Q 019847 130 VRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGG 209 (335)
Q Consensus 130 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 209 (335)
+.... ....+.+|...|+++.|......+++|+.|.+|++||+..... .++.. ..+.+..++.++ ..++++.
T Consensus 248 vd~~r-~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C---~kt~l-~~S~cnDI~~~~---~~~~SgH 319 (459)
T KOG0288|consen 248 VDSLR-LRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYC---SKTVL-PGSQCNDIVCSI---SDVISGH 319 (459)
T ss_pred ccchh-hhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhhe---ecccc-ccccccceEecc---eeeeecc
Confidence 98554 5777889999999999988766799999999999999887433 33322 234466666652 3556654
Q ss_pred CCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCC----Ccee
Q 019847 210 GREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSN----SRIL 285 (335)
Q Consensus 210 g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~----~~i~ 285 (335)
.|++|++||.+...+....+.++.++++..++++..+++. +.|..+.+.|+++.+....+.+.. ...+
T Consensus 320 --~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLss------sRDdtl~viDlRt~eI~~~~sA~g~k~asDwt 391 (459)
T KOG0288|consen 320 --FDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSS------SRDDTLKVIDLRTKEIRQTFSAEGFKCASDWT 391 (459)
T ss_pred --cccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeee------cCCCceeeeecccccEEEEeeccccccccccc
Confidence 9999999999999999999999999999999999999877 779999999999998877765422 2478
Q ss_pred EeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCcccccc--ccccceec
Q 019847 286 DLSQSPDGLTVATAGADETIRFWEAFGPSGDEDSVSHLA--GLVSLKTS 332 (335)
Q Consensus 286 ~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~--~i~~~~~~ 332 (335)
.+.|||++.|+++||.||.|+||++.+++.+........ +|.++.+.
T Consensus 392 rvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~ 440 (459)
T KOG0288|consen 392 RVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWN 440 (459)
T ss_pred eeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEc
Confidence 899999999999999999999999999988776543333 47777664
No 90
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=100.00 E-value=4.3e-31 Score=207.96 Aligned_cols=244 Identities=23% Similarity=0.443 Sum_probs=198.1
Q ss_pred ccceeeeecCC--ceEE-EecCCeEEEEEecCC--------ceeeEEeecCCCCCceEEEEcCC-CCEEEEEECCCcEEE
Q 019847 17 YYSKVIDWGRN--NVLA-VALGPVLFLWKWENG--------KVKKLLQVPGEDDYPTSVSWSHD-AKTLAVGYMDSKLQL 84 (335)
Q Consensus 17 ~~~~~~~~~~~--~~~~-~~~~~~i~vw~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i 84 (335)
..++-+...|. .+++ .+..+.|+|||.... +..+.+++.+|+..-++++|++. .-.|++++.|+.|++
T Consensus 125 gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~l 204 (422)
T KOG0264|consen 125 GEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICL 204 (422)
T ss_pred ccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEE
Confidence 33444444442 3333 457889999998642 33445578899988899999994 458899999999999
Q ss_pred EeCCCce-------eEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEeccc-CCeeeEEeecCCCCEEEEEeec-C
Q 019847 85 WDAETSK-------LVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRV-SNNVTSCIKAHSGEVCGLKWSN-E 155 (335)
Q Consensus 85 w~~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~-~~~~~~~~~~~~~~i~~~~~~~-~ 155 (335)
||+.... ....+.+|...|..++|++.+..+|++++.|+.+.+||+++ ..+......+|.++|.|++|+| +
T Consensus 205 wdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~ 284 (422)
T KOG0264|consen 205 WDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFN 284 (422)
T ss_pred EeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCC
Confidence 9997432 34567899999999999999999999999999999999996 3445666788999999999999 7
Q ss_pred CCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEE-------
Q 019847 156 GNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIH------- 228 (335)
Q Consensus 156 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~------- 228 (335)
+..||+|+.|++|++||+|+.. +++..+.+|...|.++.|+|....++++++ .|+.+.+||+..-...+
T Consensus 285 ~~ilAT~S~D~tV~LwDlRnL~--~~lh~~e~H~dev~~V~WSPh~etvLASSg--~D~rl~vWDls~ig~eq~~eda~d 360 (422)
T KOG0264|consen 285 EFILATGSADKTVALWDLRNLN--KPLHTFEGHEDEVFQVEWSPHNETVLASSG--TDRRLNVWDLSRIGEEQSPEDAED 360 (422)
T ss_pred CceEEeccCCCcEEEeechhcc--cCceeccCCCcceEEEEeCCCCCceeEecc--cCCcEEEEeccccccccChhhhcc
Confidence 8899999999999999999874 478999999999999999999999999997 99999999996422111
Q ss_pred -----Eeec---CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECC
Q 019847 229 -----GIDA---KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYP 269 (335)
Q Consensus 229 -----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~ 269 (335)
.|.+ ...|..+.|+|+...++++ .++|+.+.||.+.
T Consensus 361 gppEllF~HgGH~~kV~DfsWnp~ePW~I~S-----vaeDN~LqIW~~s 404 (422)
T KOG0264|consen 361 GPPELLFIHGGHTAKVSDFSWNPNEPWTIAS-----VAEDNILQIWQMA 404 (422)
T ss_pred CCcceeEEecCcccccccccCCCCCCeEEEE-----ecCCceEEEeecc
Confidence 1222 3469999999999998765 3889999999975
No 91
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.3e-30 Score=195.25 Aligned_cols=258 Identities=19% Similarity=0.267 Sum_probs=200.2
Q ss_pred CCCCCceEEEEcC-CCCEEEEEECCCcEEEEeCCC-ceeE-eeecccccceeEeeecCCCCCEEEEeeCCCcEEEEeccc
Q 019847 56 GEDDYPTSVSWSH-DAKTLAVGYMDSKLQLWDAET-SKLV-RNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRV 132 (335)
Q Consensus 56 ~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 132 (335)
...+.|.+++||| ...++++|+.||+||+|+++. |..+ +....|.++|.+++|+. ++..+++|+.|+.+++||+.+
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsd-dgskVf~g~~Dk~~k~wDL~S 103 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSD-DGSKVFSGGCDKQAKLWDLAS 103 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEcc-CCceEEeeccCCceEEEEccC
Confidence 3567899999999 556667899999999999986 3332 44567899999999999 999999999999999999997
Q ss_pred CCeeeEEeecCCCCEEEEEeecCCC--EEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecC
Q 019847 133 SNNVTSCIKAHSGEVCGLKWSNEGN--LLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGG 210 (335)
Q Consensus 133 ~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g 210 (335)
++ ......|.++|..+.|-+... .|++|+.|++|+.||.|... ++.++. ..+.+.++..-.. +++.+.
T Consensus 104 ~Q--~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~---pv~t~~-LPeRvYa~Dv~~p---m~vVat- 173 (347)
T KOG0647|consen 104 GQ--VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSN---PVATLQ-LPERVYAADVLYP---MAVVAT- 173 (347)
T ss_pred CC--eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCC---eeeeee-ccceeeehhccCc---eeEEEe-
Confidence 74 455678999999999988554 89999999999999988643 344433 3456777665432 444433
Q ss_pred CCCCeEEEEECCCCceEE-Ee--ecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCC--ceeecccCCCC---
Q 019847 211 REDGCIKIWNVQKGTCIH-GI--DAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNM--TKVGELQSSNS--- 282 (335)
Q Consensus 211 ~~d~~i~i~d~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~--~~~~~~~~~~~--- 282 (335)
.++.|.+|+++++.... .+ +..-.+.+++..++....+.| +-+|.+.|..+..+ +.-.+++.|..
T Consensus 174 -a~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alG------siEGrv~iq~id~~~~~~nFtFkCHR~~~~ 246 (347)
T KOG0647|consen 174 -AERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALG------SIEGRVAIQYIDDPNPKDNFTFKCHRSTNS 246 (347)
T ss_pred -cCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEee------eecceEEEEecCCCCccCceeEEEeccCCC
Confidence 69999999998764432 22 234568889888888877776 66999999988876 44445666652
Q ss_pred ------ceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCcccccccccccee
Q 019847 283 ------RILDLSQSPDGLTVATAGADETIRFWEAFGPSGDEDSVSHLAGLVSLKT 331 (335)
Q Consensus 283 ------~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~i~~~~~ 331 (335)
.|++|+|+|....|+|+|.||+..+||-+..........|...|..-.|
T Consensus 247 ~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~f 301 (347)
T KOG0647|consen 247 VNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSF 301 (347)
T ss_pred CCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEe
Confidence 4788999999999999999999999999887776666666666654443
No 92
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.2e-30 Score=204.22 Aligned_cols=283 Identities=20% Similarity=0.318 Sum_probs=231.9
Q ss_pred CCcccccceeeeecCC--ceEEEecCCeEEEEEecCCcee----eE----------Eee--cCCCCCceEEEEcCCCCEE
Q 019847 12 YLMEDYYSKVIDWGRN--NVLAVALGPVLFLWKWENGKVK----KL----------LQV--PGEDDYPTSVSWSHDAKTL 73 (335)
Q Consensus 12 ~~~~~~~~~~~~~~~~--~~~~~~~~~~i~vw~~~~~~~~----~~----------~~~--~~~~~~v~~~~~~~~~~~l 73 (335)
...+...+.++..+++ +.+.++.+++|.-|++.+++.. +. .+. .+|...+.+++.+|||+||
T Consensus 138 ~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkyl 217 (479)
T KOG0299|consen 138 IGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYL 217 (479)
T ss_pred eccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEE
Confidence 3456778889999885 7899999999999999887633 11 111 2788899999999999999
Q ss_pred EEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEee
Q 019847 74 AVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWS 153 (335)
Q Consensus 74 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~ 153 (335)
|+|+.|..|.||+.++.+.++.+++|.+.|.+++|-. ..+.+++++.|+.+++|+++... .+.++.+|...|..+...
T Consensus 218 atgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~-gt~~lys~s~Drsvkvw~~~~~s-~vetlyGHqd~v~~IdaL 295 (479)
T KOG0299|consen 218 ATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRK-GTSELYSASADRSVKVWSIDQLS-YVETLYGHQDGVLGIDAL 295 (479)
T ss_pred EecCCCceEEEecCcccchhhcccccccceeeeeeec-CccceeeeecCCceEEEehhHhH-HHHHHhCCccceeeechh
Confidence 9999999999999999999999999999999999998 88899999999999999998544 577788999999999988
Q ss_pred cCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecC
Q 019847 154 NEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAK 233 (335)
Q Consensus 154 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~ 233 (335)
.-++.+-+|+.|+++++|++.. .....+.++.+.+-|++|-.+. -+++|+ .+|.|.+|++.+.+++.+....
T Consensus 296 ~reR~vtVGgrDrT~rlwKi~e----esqlifrg~~~sidcv~~In~~--HfvsGS--dnG~IaLWs~~KKkplf~~~~A 367 (479)
T KOG0299|consen 296 SRERCVTVGGRDRTVRLWKIPE----ESQLIFRGGEGSIDCVAFINDE--HFVSGS--DNGSIALWSLLKKKPLFTSRLA 367 (479)
T ss_pred cccceEEeccccceeEEEeccc----cceeeeeCCCCCeeeEEEeccc--ceeecc--CCceEEEeeecccCceeEeecc
Confidence 8888888888999999999843 2234456788899999998775 455655 9999999999999988776521
Q ss_pred -----C--------cEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCC----ceeecccCCCCceeEeEEcCCCCEE
Q 019847 234 -----A--------QICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNM----TKVGELQSSNSRILDLSQSPDGLTV 296 (335)
Q Consensus 234 -----~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l 296 (335)
. -+++++..|....+++| +.+|.|++|-+..+ +++..+. -.+-|++++|+++|+.+
T Consensus 368 Hgv~~~~~~~~~~~Witsla~i~~sdL~asG------S~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~i 440 (479)
T KOG0299|consen 368 HGVIPELDPVNGNFWITSLAVIPGSDLLASG------SWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRI 440 (479)
T ss_pred ccccCCccccccccceeeeEecccCceEEec------CCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEE
Confidence 1 47888999999988888 77999999998776 4455554 56779999999999966
Q ss_pred EEE-eCCCcEEEEecC
Q 019847 297 ATA-GADETIRFWEAF 311 (335)
Q Consensus 297 ~~~-~~dg~v~iw~~~ 311 (335)
++| +....+-=|-..
T Consensus 441 vagiGkEhRlGRW~~~ 456 (479)
T KOG0299|consen 441 VAGIGKEHRLGRWWCL 456 (479)
T ss_pred EEecccccccceeeEe
Confidence 555 566666555443
No 93
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.5e-31 Score=221.02 Aligned_cols=290 Identities=20% Similarity=0.344 Sum_probs=227.9
Q ss_pred cccceeeeecCC-ceEEEecCCeEEEEEecCCceeeE--EeecC---CCCCceEEEEcC-CCCEEEEEECCCcEEEEeCC
Q 019847 16 DYYSKVIDWGRN-NVLAVALGPVLFLWKWENGKVKKL--LQVPG---EDDYPTSVSWSH-DAKTLAVGYMDSKLQLWDAE 88 (335)
Q Consensus 16 ~~~~~~~~~~~~-~~~~~~~~~~i~vw~~~~~~~~~~--~~~~~---~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~ 88 (335)
+...++|+.+++ .-++.++...+.||.++....... ..... -...+..+.|.. +.++||+++..|.|.+||+.
T Consensus 39 k~~~nAIs~nr~~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln 118 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN 118 (839)
T ss_pred ccccceEeecCCcceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecC
Confidence 344566777764 233444456778887765432221 11111 112355677875 57899999999999999998
Q ss_pred C---ceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeec-CCCEEEEEeC
Q 019847 89 T---SKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSN-EGNLLASGGD 164 (335)
Q Consensus 89 ~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~ 164 (335)
. .+.+..|..|+..++++.|++...++|++|+.||.|++||++.... ...+.+....|+.+.|+| .+..|+++..
T Consensus 119 k~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S-~~t~~~nSESiRDV~fsp~~~~~F~s~~d 197 (839)
T KOG0269|consen 119 KSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS-KSTFRSNSESIRDVKFSPGYGNKFASIHD 197 (839)
T ss_pred ccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc-cccccccchhhhceeeccCCCceEEEecC
Confidence 7 5667788999999999999999999999999999999999997665 555667888999999999 7889999999
Q ss_pred CCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCc--eEEEeecCCcEeEEEeC
Q 019847 165 DNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGT--CIHGIDAKAQICGLEWN 242 (335)
Q Consensus 165 dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~--~~~~~~~~~~~~~~~~~ 242 (335)
.|.+++||+|.+. +....+..|.++|.|+.|+|++ .++++|+ .|+.|+|||+.+.+ .+.++....++..+.|-
T Consensus 198 sG~lqlWDlRqp~--r~~~k~~AH~GpV~c~nwhPnr-~~lATGG--RDK~vkiWd~t~~~~~~~~tInTiapv~rVkWR 272 (839)
T KOG0269|consen 198 SGYLQLWDLRQPD--RCEKKLTAHNGPVLCLNWHPNR-EWLATGG--RDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWR 272 (839)
T ss_pred CceEEEeeccCch--hHHHHhhcccCceEEEeecCCC-ceeeecC--CCccEEEEeccCCCccceeEEeecceeeeeeec
Confidence 9999999999864 4567788999999999999966 6888886 99999999998654 46677778899999999
Q ss_pred CCCceeeeeeeeeeecCCCeEEEEECCCC-ceeecccCCCCceeEeEEcC-CCCEEEEEeCCCcEEEEecCCCC
Q 019847 243 RHHKEILSGHGFSASGDGNKLCLWKYPNM-TKVGELQSSNSRILDLSQSP-DGLTVATAGADETIRFWEAFGPS 314 (335)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~iw~~~~~~ 314 (335)
|...+.++.+ +...|-.|+|||++.. -+..++..|...++.++|.. |...|.+++.||.|..-.+++..
T Consensus 273 P~~~~hLAtc---smv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat 343 (839)
T KOG0269|consen 273 PARSYHLATC---SMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNAT 343 (839)
T ss_pred cCccchhhhh---hccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhccc
Confidence 9988765542 2256899999999764 45677889999999999976 45678899999998776665543
No 94
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.98 E-value=5.5e-30 Score=188.75 Aligned_cols=268 Identities=18% Similarity=0.289 Sum_probs=221.7
Q ss_pred EeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecc
Q 019847 52 LQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVR 131 (335)
Q Consensus 52 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~ 131 (335)
+.+.+|+.+++.+.++.+|.+|++++.|.+..+|-..+|+.+.++.+|.+.|+++.... +.+.+++|+.|.++++||++
T Consensus 4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~-~s~~liTGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDW-DSKHLITGSADQTAKLWDVE 82 (327)
T ss_pred cccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecC-CcceeeeccccceeEEEEcC
Confidence 45679999999999999999999999999999999889999999999999999999988 89999999999999999999
Q ss_pred cCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCC-----CeEEEEEccCCC----cccceeeccCCCCCeeEEEecCCCC
Q 019847 132 VSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDD-----NVVRIWERSKMS----SSKSLHRFTDHCGGVKALAWSPHQV 202 (335)
Q Consensus 132 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~ 202 (335)
+++++... ....+|..+.|+++|++++....+ +.|.++|++... ...++..+..+.+.++.+.|.|-++
T Consensus 83 tGk~la~~--k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~ 160 (327)
T KOG0643|consen 83 TGKQLATW--KTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGE 160 (327)
T ss_pred CCcEEEEe--ecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCC
Confidence 88875543 367889999999999988877643 579999998544 3445667777889999999999998
Q ss_pred cEEEEecCCCCCeEEEEECCCCceEEEe-e-cCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCC
Q 019847 203 NVLATGGGREDGCIKIWNVQKGTCIHGI-D-AKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSS 280 (335)
Q Consensus 203 ~~~~~~~g~~d~~i~i~d~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~ 280 (335)
.+++ |.+||.|..||+++|+.+... + +...|+.++++++..+++++ +.|.+-++||+.+.+.++++..
T Consensus 161 ~ii~---Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~------s~Dttakl~D~~tl~v~Kty~t- 230 (327)
T KOG0643|consen 161 TIIA---GHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITG------SKDTTAKLVDVRTLEVLKTYTT- 230 (327)
T ss_pred EEEE---ecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEec------ccCccceeeeccceeeEEEeee-
Confidence 6666 338999999999998665443 2 45689999999999999988 7899999999999999988864
Q ss_pred CCceeEeEEcCCCCEEEEEeCCCc--------------EEEEecCCCCCCCCccccccccccceec
Q 019847 281 NSRILDLSQSPDGLTVATAGADET--------------IRFWEAFGPSGDEDSVSHLAGLVSLKTS 332 (335)
Q Consensus 281 ~~~i~~~~~~~~~~~l~~~~~dg~--------------v~iw~~~~~~~~~~~~~~~~~i~~~~~~ 332 (335)
..+|++.+++|....++.|+.... -++|++--.++.....+|.++|.++.+.
T Consensus 231 e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfh 296 (327)
T KOG0643|consen 231 ERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFH 296 (327)
T ss_pred cccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEEC
Confidence 457999999997777766653221 2344444444455567888888888764
No 95
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=5.8e-30 Score=202.21 Aligned_cols=282 Identities=18% Similarity=0.272 Sum_probs=223.1
Q ss_pred CeEEEEEecCCceeeEEeecCC-CCCceEEEEcCCCCEEEEEE-CCCcEEEEeCCCceeEeeecccccceeEeeecCCCC
Q 019847 36 PVLFLWKWENGKVKKLLQVPGE-DDYPTSVSWSHDAKTLAVGY-MDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNG 113 (335)
Q Consensus 36 ~~i~vw~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 113 (335)
.++.+||+++|...- ++.+. ...-.++..- .+++++++. ....+.+|.+...........-.+++.+++-+| .|
T Consensus 18 ~~~~~~dl~TGt~~~--~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n-~G 93 (476)
T KOG0646|consen 18 INCIVWDLRTGTSLL--QYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSN-LG 93 (476)
T ss_pred cceeEEecCCCceeE--EecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcccccceeeeecCC-Cc
Confidence 469999999998643 33332 1111111111 345676665 455899999877665554445678899999999 99
Q ss_pred CEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccC------CCcccceeeccC
Q 019847 114 HILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSK------MSSSKSLHRFTD 187 (335)
Q Consensus 114 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~------~~~~~~~~~~~~ 187 (335)
.+|+.|+..|.|++|.+.++.. +..+.+|-..|+++.|+.|+.+|++|+.||.|.+|++.. ....+++..+..
T Consensus 94 ~~l~ag~i~g~lYlWelssG~L-L~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~ 172 (476)
T KOG0646|consen 94 YFLLAGTISGNLYLWELSSGIL-LNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSD 172 (476)
T ss_pred eEEEeecccCcEEEEEeccccH-HHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeecc
Confidence 9999999999999999997764 556789999999999999999999999999999998643 124567888999
Q ss_pred CCCCeeEEEecCCC--CcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEE
Q 019847 188 HCGGVKALAWSPHQ--VNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCL 265 (335)
Q Consensus 188 ~~~~v~~~~~~~~~--~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i 265 (335)
|.-+|+.+...+.+ .++++ ++ .|.++++||+..+..+.++..+..+.+++.+|.+..+++| +.+|.|.+
T Consensus 173 HtlsITDl~ig~Gg~~~rl~T-aS--~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiG------t~~G~I~~ 243 (476)
T KOG0646|consen 173 HTLSITDLQIGSGGTNARLYT-AS--EDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIG------TEEGKIFQ 243 (476)
T ss_pred CcceeEEEEecCCCccceEEE-ec--CCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEec------CCcceEEe
Confidence 99999999887653 34444 44 8999999999999999999999999999999999999888 78999999
Q ss_pred EECCCCc----------------eeecccCCCC--ceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCccccccccc
Q 019847 266 WKYPNMT----------------KVGELQSSNS--RILDLSQSPDGLTVATAGADETIRFWEAFGPSGDEDSVSHLAGLV 327 (335)
Q Consensus 266 ~d~~~~~----------------~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~i~ 327 (335)
.++.+.. .+..+.+|.+ .|+|++++-||..|++|+.||.|.|||+...+.........+.|.
T Consensus 244 ~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVt 323 (476)
T KOG0646|consen 244 NLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVT 323 (476)
T ss_pred eehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccc
Confidence 8875422 3445678888 999999999999999999999999999998876665544555565
Q ss_pred ccee
Q 019847 328 SLKT 331 (335)
Q Consensus 328 ~~~~ 331 (335)
.+.+
T Consensus 324 nL~i 327 (476)
T KOG0646|consen 324 NLQI 327 (476)
T ss_pred eeEe
Confidence 5554
No 96
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=2.2e-31 Score=203.95 Aligned_cols=261 Identities=14% Similarity=0.303 Sum_probs=218.9
Q ss_pred eecCCCCCceEEEEcCCC-CEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecc
Q 019847 53 QVPGEDDYPTSVSWSHDA-KTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVR 131 (335)
Q Consensus 53 ~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~ 131 (335)
.+.+|.+.|.|++=+|.. ..+++|+.||.|++||+.+.++...++.|.+.|..+++. ...+++++.|.+|+.|-++
T Consensus 61 ~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~---~~~~~tvgdDKtvK~wk~~ 137 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVT---QTSFFTVGDDKTVKQWKID 137 (433)
T ss_pred hccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEec---ccceEEecCCcceeeeecc
Confidence 457999999999999976 789999999999999999999999999999999999995 3788999999999999987
Q ss_pred cCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCC
Q 019847 132 VSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGR 211 (335)
Q Consensus 132 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~ 211 (335)
.. +...+. ....+..+.-+..+..+++++. .|.|||.+. ..+++.+.-....|.++.|+|....++++++
T Consensus 138 ~~--p~~til-g~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R---~~Pv~smswG~Dti~svkfNpvETsILas~~-- 207 (433)
T KOG0268|consen 138 GP--PLHTIL-GKSVYLGIDHHRKNSVFATCGE--QIDIWDEQR---DNPVSSMSWGADSISSVKFNPVETSILASCA-- 207 (433)
T ss_pred CC--cceeee-ccccccccccccccccccccCc--eeeeccccc---CCccceeecCCCceeEEecCCCcchheeeec--
Confidence 42 344333 3455677776777788999875 599999765 3456666666778999999999999999987
Q ss_pred CCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCC-ceeecccCCCCceeEeEEc
Q 019847 212 EDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNM-TKVGELQSSNSRILDLSQS 290 (335)
Q Consensus 212 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~ 290 (335)
.|+.|.+||++++.+++.+...-.-+.++|+|.+-.+.++ .+|..++.||++.. +++....+|.+.|.++.||
T Consensus 208 sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a------~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfs 281 (433)
T KOG0268|consen 208 SDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAA------NEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFS 281 (433)
T ss_pred cCCceEEEecccCCccceeeeeccccceecCccccceeec------cccccceehhhhhhcccchhhcccceeEEEeccC
Confidence 8999999999999999999888888999999966555555 89999999999874 5677788999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEecCCCCCCCCc-cccccccccceec
Q 019847 291 PDGLTVATAGADETIRFWEAFGPSGDEDS-VSHLAGLVSLKTS 332 (335)
Q Consensus 291 ~~~~~l~~~~~dg~v~iw~~~~~~~~~~~-~~~~~~i~~~~~~ 332 (335)
|.|+-+++||.|.+|+||....+...... ...+..|.++++|
T Consensus 282 ptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S 324 (433)
T KOG0268|consen 282 PTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYS 324 (433)
T ss_pred CCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEe
Confidence 99999999999999999999887655433 2445556666554
No 97
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.97 E-value=4.8e-28 Score=198.34 Aligned_cols=272 Identities=14% Similarity=0.179 Sum_probs=202.4
Q ss_pred eEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEE-EEEECCCcEEEEeCCCceeEeeecccccceeEee
Q 019847 29 VLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTL-AVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSS 107 (335)
Q Consensus 29 ~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~ 107 (335)
+++.+.|+.+++||..+++....+. .+ ..+.+++|+|+++.+ ++++.++.|++||..+++....+..+. .+..+.
T Consensus 4 ~~s~~~d~~v~~~d~~t~~~~~~~~--~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~ 79 (300)
T TIGR03866 4 YVSNEKDNTISVIDTATLEVTRTFP--VG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP-DPELFA 79 (300)
T ss_pred EEEecCCCEEEEEECCCCceEEEEE--CC-CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC-CccEEE
Confidence 5566789999999999888655443 33 346789999999977 566778999999999998877776543 356789
Q ss_pred ecCCCCCEEE-EeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCC-eEEEEEccCCCcccceeec
Q 019847 108 WNHWNGHILT-SGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDN-VVRIWERSKMSSSKSLHRF 185 (335)
Q Consensus 108 ~~~~~~~~l~-~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~ 185 (335)
|+| +++.++ ++..++.+++||+++... ...+. +...+.+++|+|+++++++++.++ .+.+||.++.. .....
T Consensus 80 ~~~-~g~~l~~~~~~~~~l~~~d~~~~~~-~~~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~---~~~~~ 153 (300)
T TIGR03866 80 LHP-NGKILYIANEDDNLVTVIDIETRKV-LAEIP-VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYE---IVDNV 153 (300)
T ss_pred ECC-CCCEEEEEcCCCCeEEEEECCCCeE-EeEee-CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCe---EEEEE
Confidence 999 777665 456689999999986544 33332 234568899999999999988775 46778976532 22222
Q ss_pred cCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCC--------cEeEEEeCCCCceeeeeeeeeee
Q 019847 186 TDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKA--------QICGLEWNRHHKEILSGHGFSAS 257 (335)
Q Consensus 186 ~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 257 (335)
. ....+..++|+|++..+++++. .++.|++||+++++.+..+.... ....+.|+|+++.++.+.
T Consensus 154 ~-~~~~~~~~~~s~dg~~l~~~~~--~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~----- 225 (300)
T TIGR03866 154 L-VDQRPRFAEFTADGKELWVSSE--IGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVAL----- 225 (300)
T ss_pred E-cCCCccEEEECCCCCEEEEEcC--CCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEc-----
Confidence 2 2234578999999987777654 68999999999998877664221 235688999999865432
Q ss_pred cCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEE-eCCCcEEEEecCCCCCCCCc
Q 019847 258 GDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATA-GADETIRFWEAFGPSGDEDS 319 (335)
Q Consensus 258 ~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~v~iw~~~~~~~~~~~ 319 (335)
+.++.+.+||..+++.+..+. +...+.+++|+|+|++|+++ +.+|.|.+||+.+.+.....
T Consensus 226 ~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~ 287 (300)
T TIGR03866 226 GPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSI 287 (300)
T ss_pred CCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE
Confidence 446789999999888776553 34568999999999999886 46899999999987765544
No 98
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=1e-29 Score=219.86 Aligned_cols=267 Identities=19% Similarity=0.328 Sum_probs=217.9
Q ss_pred CCCCceEEEEcCCCCEEEEEE--CCCcEEEEeCCC------------ceeEeeecccccceeEeeecCCCCCEEEEeeCC
Q 019847 57 EDDYPTSVSWSHDAKTLAVGY--MDSKLQLWDAET------------SKLVRNLEGHHRRVATSSWNHWNGHILTSGSKD 122 (335)
Q Consensus 57 ~~~~v~~~~~~~~~~~l~~~~--~dg~i~iw~~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 122 (335)
++..|.+++.+|++..+++|+ .||.++||+.+. .+.+.....|.+.|.|+.|+| ++.+||+|+.|
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~-dG~~lAsGSDD 90 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSP-DGSYLASGSDD 90 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECC-CCCeEeeccCc
Confidence 455689999999999999999 899999998642 234556678999999999999 99999999999
Q ss_pred CcEEEEeccc------C-----------CeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeec
Q 019847 123 KSIINHDVRV------S-----------NNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRF 185 (335)
Q Consensus 123 g~i~~~d~~~------~-----------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 185 (335)
+.|.+|+... . -.....+.+|...|..++|+|++.+|++++.|++|.+|+.++. +.+..+
T Consensus 91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF---~~~~vl 167 (942)
T KOG0973|consen 91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF---ELLKVL 167 (942)
T ss_pred ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccc---eeeeee
Confidence 9999999872 0 0245678899999999999999999999999999999997764 668889
Q ss_pred cCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec-------CCcEeEEEeCCCCceeeeeeeeeeec
Q 019847 186 TDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA-------KAQICGLEWNRHHKEILSGHGFSASG 258 (335)
Q Consensus 186 ~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (335)
.+|.+.|..+.|.|-|+++.+-+ .|++|++|++.+....+.+.. ......+.|+|+|+++++...+ .+
T Consensus 168 ~~H~s~VKGvs~DP~Gky~ASqs---dDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~--n~ 242 (942)
T KOG0973|consen 168 RGHQSLVKGVSWDPIGKYFASQS---DDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAV--NG 242 (942)
T ss_pred ecccccccceEECCccCeeeeec---CCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhc--cC
Confidence 99999999999999997555544 799999999887767666643 2357889999999999998543 35
Q ss_pred CCCeEEEEECCCCceeecccCCCCceeEeEEcCC-----CC------------EEEEEeCCCcEEEEecCCCCCCCCccc
Q 019847 259 DGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPD-----GL------------TVATAGADETIRFWEAFGPSGDEDSVS 321 (335)
Q Consensus 259 ~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~-----~~------------~l~~~~~dg~v~iw~~~~~~~~~~~~~ 321 (335)
....+.|.+-.+.+.-..+-+|..+++++.|+|. .. .+|+|+.|+.|.||....+++......
T Consensus 243 ~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~ 322 (942)
T KOG0973|consen 243 GKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHN 322 (942)
T ss_pred CcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhh
Confidence 5678999998888888899999999999999981 11 678999999999999976665443321
Q ss_pred -cccccccceec
Q 019847 322 -HLAGLVSLKTS 332 (335)
Q Consensus 322 -~~~~i~~~~~~ 332 (335)
....|..++++
T Consensus 323 lf~~SI~DmsWs 334 (942)
T KOG0973|consen 323 LFNKSIVDMSWS 334 (942)
T ss_pred hhcCceeeeeEc
Confidence 22345555543
No 99
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=6.9e-30 Score=215.54 Aligned_cols=243 Identities=16% Similarity=0.263 Sum_probs=195.7
Q ss_pred cccccceeeeecCC--ceEEEecCCeEEEEEecC--------------------------------Cc------------
Q 019847 14 MEDYYSKVIDWGRN--NVLAVALGPVLFLWKWEN--------------------------------GK------------ 47 (335)
Q Consensus 14 ~~~~~~~~~~~~~~--~~~~~~~~~~i~vw~~~~--------------------------------~~------------ 47 (335)
.+...|-++.|+++ .++++|.|+.|+||.+.. ..
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 46677888999984 566678999999999765 00
Q ss_pred --------------eeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCC
Q 019847 48 --------------VKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNG 113 (335)
Q Consensus 48 --------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 113 (335)
..+...+.||.+.|..+.|+.++ +|++++.|.+|++|++...++++.|. |..-|+|++|+|.|.
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDD 422 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDD 422 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCC
Confidence 01123345899999999999765 89999999999999999999999998 999999999999999
Q ss_pred CEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeec------cC
Q 019847 114 HILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRF------TD 187 (335)
Q Consensus 114 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------~~ 187 (335)
++|++|+-||.+++|++...+ +.....-..-|++++|.|+|+..++|+.+|.+++|+.+........+.. ..
T Consensus 423 ryFiSGSLD~KvRiWsI~d~~--Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~ 500 (712)
T KOG0283|consen 423 RYFISGSLDGKVRLWSISDKK--VVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQ 500 (712)
T ss_pred CcEeecccccceEEeecCcCe--eEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCcccc
Confidence 999999999999999997443 3334455688999999999999999999999999998764332211111 11
Q ss_pred CCCCeeEEEecCCCCc-EEEEecCCCCCeEEEEECCCCceEEEeecC---CcEeEEEeCCCCceeeeeeeeeeecCCCeE
Q 019847 188 HCGGVKALAWSPHQVN-VLATGGGREDGCIKIWNVQKGTCIHGIDAK---AQICGLEWNRHHKEILSGHGFSASGDGNKL 263 (335)
Q Consensus 188 ~~~~v~~~~~~~~~~~-~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 263 (335)
|. .|+.+.|.|.... ++++. .|..|||||.++..++..+++. ..-....|+.+|++++++ ++|..|
T Consensus 501 ~~-rITG~Q~~p~~~~~vLVTS---nDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~------seDs~V 570 (712)
T KOG0283|consen 501 GK-RITGLQFFPGDPDEVLVTS---NDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSA------SEDSWV 570 (712)
T ss_pred Cc-eeeeeEecCCCCCeEEEec---CCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEe------ecCceE
Confidence 33 7999999987664 66655 6999999999988888888753 345678899999999988 789999
Q ss_pred EEEECCC
Q 019847 264 CLWKYPN 270 (335)
Q Consensus 264 ~i~d~~~ 270 (335)
++|+...
T Consensus 571 YiW~~~~ 577 (712)
T KOG0283|consen 571 YIWKNDS 577 (712)
T ss_pred EEEeCCC
Confidence 9999744
No 100
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=1.4e-30 Score=199.63 Aligned_cols=276 Identities=11% Similarity=0.190 Sum_probs=214.6
Q ss_pred cccceeeeecCC---ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCcee
Q 019847 16 DYYSKVIDWGRN---NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKL 92 (335)
Q Consensus 16 ~~~~~~~~~~~~---~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 92 (335)
.--+.|++-+++ .+++++.||.|++||+...++ ...+..|.+.|..+++.. ..+++++.|.+|+.|.++- .+
T Consensus 66 rdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~--~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p 140 (433)
T KOG0268|consen 66 RDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQREC--IRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PP 140 (433)
T ss_pred ccccchhhcCcchhhhhhccccCceEEEEehhhhhh--hheeecccCceeeEEecc--cceEEecCCcceeeeeccC-Cc
Confidence 344677887875 477888999999999998776 445668999999999976 6788999999999999864 45
Q ss_pred EeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeec-CCCEEEEEeCCCeEEEE
Q 019847 93 VRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSN-EGNLLASGGDDNVVRIW 171 (335)
Q Consensus 93 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iw 171 (335)
+..+. ....+..+.-+. .++.+++++. .|-+||.+...+ ++.+.-....|.++.|+| ....|+++..|+.|.+|
T Consensus 141 ~~til-g~s~~~gIdh~~-~~~~FaTcGe--~i~IWD~~R~~P-v~smswG~Dti~svkfNpvETsILas~~sDrsIvLy 215 (433)
T KOG0268|consen 141 LHTIL-GKSVYLGIDHHR-KNSVFATCGE--QIDIWDEQRDNP-VSSMSWGADSISSVKFNPVETSILASCASDRSIVLY 215 (433)
T ss_pred ceeee-cccccccccccc-ccccccccCc--eeeecccccCCc-cceeecCCCceeEEecCCCcchheeeeccCCceEEE
Confidence 55554 345677777766 7788888876 489999985554 555666677899999999 55678888899999999
Q ss_pred EccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCc-eEEEee-cCCcEeEEEeCCCCceee
Q 019847 172 ERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGT-CIHGID-AKAQICGLEWNRHHKEIL 249 (335)
Q Consensus 172 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~ 249 (335)
|++.....+.+. ....-+.++|+|.+ ..+++++ +|..++.||++..+ ++..+. +.+.+.++.|+|.|+.++
T Consensus 216 D~R~~~Pl~KVi----~~mRTN~IswnPea-fnF~~a~--ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efv 288 (433)
T KOG0268|consen 216 DLRQASPLKKVI----LTMRTNTICWNPEA-FNFVAAN--EDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFV 288 (433)
T ss_pred ecccCCccceee----eeccccceecCccc-cceeecc--ccccceehhhhhhcccchhhcccceeEEEeccCCCcchhc
Confidence 999865543332 22345689999954 6677766 99999999998753 344444 345799999999999999
Q ss_pred eeeeeeeecCCCeEEEEECCCCceeeccc-CCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCC
Q 019847 250 SGHGFSASGDGNKLCLWKYPNMTKVGELQ-SSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPS 314 (335)
Q Consensus 250 ~~~~~~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~ 314 (335)
+| +-|.+|+||.++.+.....+. .-...|.++.||.|.+++++||.|+.|++|.....+
T Consensus 289 sg------syDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 289 SG------SYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASE 348 (433)
T ss_pred cc------cccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhh
Confidence 98 669999999998766543332 123469999999999999999999999999876543
No 101
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.5e-30 Score=213.31 Aligned_cols=250 Identities=19% Similarity=0.302 Sum_probs=212.1
Q ss_pred CCCCEEEEEECCCcEEEEeCCCce------eEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCC-eeeEEe
Q 019847 68 HDAKTLAVGYMDSKLQLWDAETSK------LVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSN-NVTSCI 140 (335)
Q Consensus 68 ~~~~~l~~~~~dg~i~iw~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~-~~~~~~ 140 (335)
|.++||++|+.||.|++|+..... ....++.|...|..+.... +++.|++++.|-+|++|+..... ....++
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~-~~~tlIS~SsDtTVK~W~~~~~~~~c~sti 113 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCG-NGKTLISASSDTTVKVWNAHKDNTFCMSTI 113 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhc-CCCceEEecCCceEEEeecccCcchhHhhh
Confidence 467789999999999999986432 3667888999999999988 88899999999999999998664 456778
Q ss_pred ecCCCCEEEEEe-ecCCCEEEEEeCCCeEEEEEccCCCc-------ccceeecc-CCCCCeeEEEecCCCCcEEEEecCC
Q 019847 141 KAHSGEVCGLKW-SNEGNLLASGGDDNVVRIWERSKMSS-------SKSLHRFT-DHCGGVKALAWSPHQVNVLATGGGR 211 (335)
Q Consensus 141 ~~~~~~i~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~-------~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~g~ 211 (335)
..|...|.|+++ .++...+|+|+.|+.|.+||++.+.. ......+. ++..+|++++.++.+ .++++|+
T Consensus 114 r~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~-t~ivsGg-- 190 (735)
T KOG0308|consen 114 RTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG-TIIVSGG-- 190 (735)
T ss_pred hcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcc-eEEEecC--
Confidence 899999999999 77888999999999999999986522 11222233 788899999999998 5777776
Q ss_pred CCCeEEEEECCCCceEEEeecC-CcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEc
Q 019847 212 EDGCIKIWNVQKGTCIHGIDAK-AQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQS 290 (335)
Q Consensus 212 ~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~ 290 (335)
..+.+++||.++.+.+..+.+| ..|..+..+++|..++++ +.||+|++||+...+++.++..|...|.++..+
T Consensus 191 tek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~------sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~ 264 (735)
T KOG0308|consen 191 TEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSA------SSDGTIRLWDLGQQRCLATYIVHKEGVWALQSS 264 (735)
T ss_pred cccceEEeccccccceeeeeccccceEEEEEcCCCCeEeec------CCCceEEeeeccccceeeeEEeccCceEEEeeC
Confidence 8999999999999999888865 479999999999999988 789999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEecCCCCCCCCccccccccc
Q 019847 291 PDGLTVATAGADETIRFWEAFGPSGDEDSVSHLAGLV 327 (335)
Q Consensus 291 ~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~i~ 327 (335)
|+-..+.+|+.||.|..=|+.+...........+.|.
T Consensus 265 ~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~ 301 (735)
T KOG0308|consen 265 PSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVL 301 (735)
T ss_pred CCcceEEecCCCCcEEecccCCchhheEeecCCCchh
Confidence 9999999999999999999998644433334444443
No 102
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.5e-30 Score=213.34 Aligned_cols=273 Identities=17% Similarity=0.353 Sum_probs=228.4
Q ss_pred ceEEEecCCeEEEEEecCCcee----eEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCc--eeEeeeccccc
Q 019847 28 NVLAVALGPVLFLWKWENGKVK----KLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETS--KLVRNLEGHHR 101 (335)
Q Consensus 28 ~~~~~~~~~~i~vw~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~--~~~~~~~~~~~ 101 (335)
.+++++.||.|++|++...... ...+++.|.+.|..+....+++.|++++.|-+|++|+...+ -+...+..|..
T Consensus 39 yLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~D 118 (735)
T KOG0308|consen 39 YLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKD 118 (735)
T ss_pred eEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccc
Confidence 4899999999999998754432 25567889999999999999999999999999999999877 56778889999
Q ss_pred ceeEeeecCCCCCEEEEeeCCCcEEEEecccCCe---------eeEEee-cCCCCEEEEEeecCCCEEEEEeCCCeEEEE
Q 019847 102 RVATSSWNHWNGHILTSGSKDKSIINHDVRVSNN---------VTSCIK-AHSGEVCGLKWSNEGNLLASGGDDNVVRIW 171 (335)
Q Consensus 102 ~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~---------~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw 171 (335)
-|.|+++...+..++++|+-|+.|.+||++++.. ....+. ++..+|++++.++.+..+++|+.++.+++|
T Consensus 119 YVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~w 198 (735)
T KOG0308|consen 119 YVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLW 198 (735)
T ss_pred hheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEe
Confidence 9999999444999999999999999999986522 122233 788899999999999999999999999999
Q ss_pred EccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecC-CcEeEEEeCCCCceeee
Q 019847 172 ERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAK-AQICGLEWNRHHKEILS 250 (335)
Q Consensus 172 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 250 (335)
|.++ .+.+..+.+|...|..+..++||..++.++ .||+|++||+...+++.++..+ ..+.++..+|+-..+++
T Consensus 199 Dprt---~~kimkLrGHTdNVr~ll~~dDGt~~ls~s---SDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYs 272 (735)
T KOG0308|consen 199 DPRT---CKKIMKLRGHTDNVRVLLVNDDGTRLLSAS---SDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYS 272 (735)
T ss_pred cccc---ccceeeeeccccceEEEEEcCCCCeEeecC---CCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEe
Confidence 9776 455677779999999999999998888766 6999999999999999998754 46899999999988888
Q ss_pred eeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCC
Q 019847 251 GHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFG 312 (335)
Q Consensus 251 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~ 312 (335)
| +.|+.|..=|+++......+-....+|..+..+...+-+-+++.|+.|+-|....
T Consensus 273 G------~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~ 328 (735)
T KOG0308|consen 273 G------GRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEP 328 (735)
T ss_pred c------CCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCcc
Confidence 7 7899999999988654444444556677777776555557788899999997654
No 103
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=2.5e-30 Score=194.65 Aligned_cols=267 Identities=19% Similarity=0.328 Sum_probs=214.6
Q ss_pred EeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCC------------c------eeEeeecccccceeEeeecCCCC
Q 019847 52 LQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAET------------S------KLVRNLEGHHRRVATSSWNHWNG 113 (335)
Q Consensus 52 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~------------~------~~~~~~~~~~~~v~~~~~~~~~~ 113 (335)
..+..|+.++.+.+|+|||.++|+|+.|..|+|.|++. + -.++++..|..+|+++.|+| ..
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP-re 184 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP-RE 184 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc-hh
Confidence 34567999999999999999999999999999999861 1 24667788999999999999 99
Q ss_pred CEEEEeeCCCcEEEEecccCCe--eeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCC
Q 019847 114 HILTSGSKDKSIINHDVRVSNN--VTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGG 191 (335)
Q Consensus 114 ~~l~~~~~dg~i~~~d~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 191 (335)
.+|++|+.|++|++||+..... ..+.+ ....+|.++.|+|.|.+|++|..-..+++||+++.+....-..-..|.+.
T Consensus 185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~a 263 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGA 263 (430)
T ss_pred heEEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccc
Confidence 9999999999999999864321 11212 24568999999999999999999999999999885543333444578999
Q ss_pred eeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec---CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEEC
Q 019847 192 VKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA---KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKY 268 (335)
Q Consensus 192 v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~ 268 (335)
|+++.+++.+. +.++++ .||.|++||--+++++.++.. +..|++..|..++++++++ +.|..+++|.+
T Consensus 264 i~~V~Ys~t~~-lYvTaS--kDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsS------G~DS~vkLWEi 334 (430)
T KOG0640|consen 264 ITQVRYSSTGS-LYVTAS--KDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSS------GKDSTVKLWEI 334 (430)
T ss_pred eeEEEecCCcc-EEEEec--cCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeec------CCcceeeeeee
Confidence 99999999995 777776 999999999999999988863 4589999999999999987 88999999999
Q ss_pred CCCceeecccCCC--C---ceeEeEEcCCCCEEEEEeC-CCcEEEEecCCCCCCC-Cccccccccccc
Q 019847 269 PNMTKVGELQSSN--S---RILDLSQSPDGLTVATAGA-DETIRFWEAFGPSGDE-DSVSHLAGLVSL 329 (335)
Q Consensus 269 ~~~~~~~~~~~~~--~---~i~~~~~~~~~~~l~~~~~-dg~v~iw~~~~~~~~~-~~~~~~~~i~~~ 329 (335)
.+++.+.++.+-. + --+...|+....|++.-.+ .+.+.-||.++..... -..+|.+.+.-+
T Consensus 335 ~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i 402 (430)
T KOG0640|consen 335 STGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWI 402 (430)
T ss_pred cCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEE
Confidence 9999998876531 1 1244567777777776653 4678899998875443 345777766544
No 104
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=2.4e-29 Score=214.03 Aligned_cols=252 Identities=25% Similarity=0.432 Sum_probs=216.7
Q ss_pred CCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEee-ecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCe
Q 019847 57 EDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRN-LEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNN 135 (335)
Q Consensus 57 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~ 135 (335)
+...+.+..|. ..++++++.+.+|++||..++..+.. +.+|.+.|.++++.. .++++++|+.|.++++||..++.+
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~-~~~~lvsgS~D~t~rvWd~~sg~C 283 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPS-GGDKLVSGSTDKTERVWDCSTGEC 283 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEec-CCCEEEEEecCCcEEeEecCCCcE
Confidence 56677888887 66899999999999999999998888 999999999999976 799999999999999999886665
Q ss_pred eeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCe
Q 019847 136 VTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGC 215 (335)
Q Consensus 136 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~ 215 (335)
...+.+|...+.++...+ .++++|+.|.+|++|++.+ ...+..+.+|.++|.++..+ + .++++++ .|++
T Consensus 284 -~~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n---~~~l~l~~~h~~~V~~v~~~--~-~~lvsgs--~d~~ 352 (537)
T KOG0274|consen 284 -THSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTN---GACLNLLRGHTGPVNCVQLD--E-PLLVSGS--YDGT 352 (537)
T ss_pred -EEEecCCCceEEEEEccC--ceEeeccCCceEEEEeccC---cceEEEeccccccEEEEEec--C-CEEEEEe--cCce
Confidence 777889999999988654 5788899999999999886 45678888899999999998 3 3666655 8999
Q ss_pred EEEEECCCCceEEEeecC-CcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCC-ceeecccCCCCceeEeEEcCCC
Q 019847 216 IKIWNVQKGTCIHGIDAK-AQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNM-TKVGELQSSNSRILDLSQSPDG 293 (335)
Q Consensus 216 i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~ 293 (335)
|++||+.+++++..+..+ ..|.++.+.+. ..+++| +.|+.|++||+++. +++.++.+|.+-+..+.+ .+
T Consensus 353 v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sg------s~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~ 423 (537)
T KOG0274|consen 353 VKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSG------SLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RD 423 (537)
T ss_pred EEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEee------eeccceEeecCCchhhhhhhhcCCccccccccc--cc
Confidence 999999999999999875 47999987776 667776 67999999999999 999999999998876665 56
Q ss_pred CEEEEEeCCCcEEEEecCCCCCCCCccc-ccccccccee
Q 019847 294 LTVATAGADETIRFWEAFGPSGDEDSVS-HLAGLVSLKT 331 (335)
Q Consensus 294 ~~l~~~~~dg~v~iw~~~~~~~~~~~~~-~~~~i~~~~~ 331 (335)
++|++++.|+.|++||...++......+ |...|..+..
T Consensus 424 ~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~ 462 (537)
T KOG0274|consen 424 NFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALAL 462 (537)
T ss_pred ceeEeccccccEEEeecccCceeeeeccCCcccEEEeec
Confidence 6999999999999999999988887777 5666766654
No 105
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.97 E-value=9e-30 Score=203.23 Aligned_cols=283 Identities=19% Similarity=0.253 Sum_probs=228.3
Q ss_pred CCcccccceeeeecC-CceEEEecCCeEEEEEecCCce-eeEEee--cCCCCCceEEEEcCCCCEEEEEECCCcEEEEeC
Q 019847 12 YLMEDYYSKVIDWGR-NNVLAVALGPVLFLWKWENGKV-KKLLQV--PGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDA 87 (335)
Q Consensus 12 ~~~~~~~~~~~~~~~-~~~~~~~~~~~i~vw~~~~~~~-~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~ 87 (335)
.+.+...+.++..++ .+.+..+..|.|+|||+..... .++-.+ ......|+++.+.|||+.|++|+.-.++.|||+
T Consensus 415 tL~HGEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDL 494 (705)
T KOG0639|consen 415 TLAHGEVVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL 494 (705)
T ss_pred hhccCcEEEEEEecCCcceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence 344555566666665 5667777889999999865322 122222 234678999999999999999999999999999
Q ss_pred CCcee--EeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCC
Q 019847 88 ETSKL--VRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDD 165 (335)
Q Consensus 88 ~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 165 (335)
....+ ..++....-...+++.+| +.++.+++..||.|.|||+. .+.+++.+++|...+.||.++++|..|.+|+-|
T Consensus 495 AapTprikaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLh-nq~~VrqfqGhtDGascIdis~dGtklWTGGlD 572 (705)
T KOG0639|consen 495 AAPTPRIKAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLH-NQTLVRQFQGHTDGASCIDISKDGTKLWTGGLD 572 (705)
T ss_pred cCCCcchhhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcc-cceeeecccCCCCCceeEEecCCCceeecCCCc
Confidence 76543 344444445677888999 99999999999999999998 555688899999999999999999999999999
Q ss_pred CeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCC
Q 019847 166 NVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHH 245 (335)
Q Consensus 166 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (335)
.+||.||+++... ++.. ...+.|.++..+|.++++++ |-+++.+.+......+..+...+..-|.++.|.+.|
T Consensus 573 ntvRcWDlregrq---lqqh-dF~SQIfSLg~cP~~dWlav---GMens~vevlh~skp~kyqlhlheScVLSlKFa~cG 645 (705)
T KOG0639|consen 573 NTVRCWDLREGRQ---LQQH-DFSSQIFSLGYCPTGDWLAV---GMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCG 645 (705)
T ss_pred cceeehhhhhhhh---hhhh-hhhhhheecccCCCccceee---ecccCcEEEEecCCccceeecccccEEEEEEecccC
Confidence 9999999987543 2211 23578999999999986665 338899999887766666656667789999999999
Q ss_pred ceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEec
Q 019847 246 KEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEA 310 (335)
Q Consensus 246 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~ 310 (335)
+++++. +.|+-+..|...-+..+...+. .+.|.+..+|.|+++++||+.|....+|.+
T Consensus 646 kwfvSt------GkDnlLnawrtPyGasiFqskE-~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 646 KWFVST------GKDNLLNAWRTPYGASIFQSKE-SSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ceeeec------CchhhhhhccCccccceeeccc-cCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 999876 7899999999999988887765 456999999999999999999999999875
No 106
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=2.3e-27 Score=171.28 Aligned_cols=288 Identities=18% Similarity=0.290 Sum_probs=218.1
Q ss_pred CcccccceeeeecCC-ceEEEe-cCCeEEEEEec------CC----c---eeeEEeecCCCCCceEEEEcCCCCEEEEEE
Q 019847 13 LMEDYYSKVIDWGRN-NVLAVA-LGPVLFLWKWE------NG----K---VKKLLQVPGEDDYPTSVSWSHDAKTLAVGY 77 (335)
Q Consensus 13 ~~~~~~~~~~~~~~~-~~~~~~-~~~~i~vw~~~------~~----~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 77 (335)
+.+...+.+++|+|. .+++++ ..++.+|.... .+ + .....+.+.|.+.|+|.+|+|+|+++++|+
T Consensus 29 l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgs 108 (350)
T KOG0641|consen 29 LEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGS 108 (350)
T ss_pred ecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecC
Confidence 345567889999994 566655 55677776432 11 1 111223356899999999999999999999
Q ss_pred CCCcEEEEeCCCce-----eEeeecccccceeEeeecC---CCCCEEEEee-CCCcEEEEecccCCeeeEEeecCCCCEE
Q 019847 78 MDSKLQLWDAETSK-----LVRNLEGHHRRVATSSWNH---WNGHILTSGS-KDKSIINHDVRVSNNVTSCIKAHSGEVC 148 (335)
Q Consensus 78 ~dg~i~iw~~~~~~-----~~~~~~~~~~~v~~~~~~~---~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~~~~~i~ 148 (335)
.|.+|++..++... .-.++..|.+.|..++|.. ..+.+|++++ .|..|++-|...+.. ...+.+|.+.|.
T Consensus 109 ndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~-~~a~sghtghil 187 (350)
T KOG0641|consen 109 NDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQG-FHALSGHTGHIL 187 (350)
T ss_pred CCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCc-ceeecCCcccEE
Confidence 99999998765332 1235778999999999964 1345666654 467788888876554 666889999998
Q ss_pred EEEeecCCCEEEEEeCCCeEEEEEccCCCcccceee-ccC---CCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCC
Q 019847 149 GLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHR-FTD---HCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKG 224 (335)
Q Consensus 149 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~---~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~ 224 (335)
++ ++-++-.+++|+.|.+|++||++-+.....+.. +.+ ..+.|.+++..|.| ++++++. .|....+||++.+
T Consensus 188 al-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsg-rll~sg~--~dssc~lydirg~ 263 (350)
T KOG0641|consen 188 AL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSG-RLLASGH--ADSSCMLYDIRGG 263 (350)
T ss_pred EE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCc-ceeeecc--CCCceEEEEeeCC
Confidence 76 344688999999999999999986544332221 111 23568999999999 5778765 9999999999999
Q ss_pred ceEEEeec-CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCC----ceeecccCCCCceeEeEEcCCCCEEEEE
Q 019847 225 TCIHGIDA-KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNM----TKVGELQSSNSRILDLSQSPDGLTVATA 299 (335)
Q Consensus 225 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 299 (335)
+.++.+.. ...|.++.|+|...+++++ +-|..|++-|+... -++.....|...+..+.|+|..-.+++.
T Consensus 264 r~iq~f~phsadir~vrfsp~a~yllt~------syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfiss 337 (350)
T KOG0641|consen 264 RMIQRFHPHSADIRCVRFSPGAHYLLTC------SYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISS 337 (350)
T ss_pred ceeeeeCCCccceeEEEeCCCceEEEEe------cccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeec
Confidence 99998865 4689999999999999988 55999999998641 2233455788888999999999999999
Q ss_pred eCCCcEEEEecC
Q 019847 300 GADETIRFWEAF 311 (335)
Q Consensus 300 ~~dg~v~iw~~~ 311 (335)
+.|.++.+|-+.
T Consensus 338 sadkt~tlwa~~ 349 (350)
T KOG0641|consen 338 SADKTATLWALN 349 (350)
T ss_pred cCcceEEEeccC
Confidence 999999999764
No 107
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=7.6e-29 Score=195.60 Aligned_cols=253 Identities=20% Similarity=0.320 Sum_probs=209.9
Q ss_pred EeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEee-----------------e-cccccceeEeeecCCCC
Q 019847 52 LQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRN-----------------L-EGHHRRVATSSWNHWNG 113 (335)
Q Consensus 52 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~-----------------~-~~~~~~v~~~~~~~~~~ 113 (335)
.....|.-+|.+++++|++++.++++.+|+|.=|++.+++.... - +.|...+.+++.++ ++
T Consensus 136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~-Dg 214 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSS-DG 214 (479)
T ss_pred eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcC-CC
Confidence 34567999999999999999999999999999999988763310 1 26778899999999 99
Q ss_pred CEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCee
Q 019847 114 HILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVK 193 (335)
Q Consensus 114 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~ 193 (335)
++|++|+.|..|.||+.++.+. .+.+.+|.+.|.+++|-.....|++++.|+.|++|+++. ...+.++.+|.+.|.
T Consensus 215 kylatgg~d~~v~Iw~~~t~eh-v~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~---~s~vetlyGHqd~v~ 290 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEH-VKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQ---LSYVETLYGHQDGVL 290 (479)
T ss_pred cEEEecCCCceEEEecCcccch-hhcccccccceeeeeeecCccceeeeecCCceEEEehhH---hHHHHHHhCCcccee
Confidence 9999999999999999997765 556889999999999998888999999999999999876 445778889999999
Q ss_pred EEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCce
Q 019847 194 ALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTK 273 (335)
Q Consensus 194 ~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~ 273 (335)
.+....-+ ..+++++ .|+++++|++.....+....+...+-|++|-.+.. +++| +++|.|.+|++.+.++
T Consensus 291 ~IdaL~re-R~vtVGg--rDrT~rlwKi~eesqlifrg~~~sidcv~~In~~H-fvsG------SdnG~IaLWs~~KKkp 360 (479)
T KOG0299|consen 291 GIDALSRE-RCVTVGG--RDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDEH-FVSG------SDNGSIALWSLLKKKP 360 (479)
T ss_pred eechhccc-ceEEecc--ccceeEEEeccccceeeeeCCCCCeeeEEEecccc-eeec------cCCceEEEeeecccCc
Confidence 99887766 5888876 99999999996555444444556788888866554 3444 8899999999999888
Q ss_pred eeccc-CC-----------CCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCc
Q 019847 274 VGELQ-SS-----------NSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDEDS 319 (335)
Q Consensus 274 ~~~~~-~~-----------~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~ 319 (335)
+.+.+ +| ...|++++..|...++++|+.+|.|++|.+..+.....+
T Consensus 361 lf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~ 418 (479)
T KOG0299|consen 361 LFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINL 418 (479)
T ss_pred eeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccce
Confidence 77653 22 127899999999999999999999999999998544433
No 108
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.97 E-value=5e-29 Score=196.53 Aligned_cols=287 Identities=16% Similarity=0.216 Sum_probs=222.7
Q ss_pred ccccceeeeecC--C-ceEEE-ecCCeEEEEEecCC--ceeeEEeecCCCCCceEEEEcC-CCCEEEEEECCCcEEEEeC
Q 019847 15 EDYYSKVIDWGR--N-NVLAV-ALGPVLFLWKWENG--KVKKLLQVPGEDDYPTSVSWSH-DAKTLAVGYMDSKLQLWDA 87 (335)
Q Consensus 15 ~~~~~~~~~~~~--~-~~~~~-~~~~~i~vw~~~~~--~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~ 87 (335)
.+..+.+++|+| + .++++ ...|.|-+||+.+. .....+.+..|..+|.++.|+| +...+++.+.||+|++-|+
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~ 264 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDF 264 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeee
Confidence 456788999998 3 44444 47799999999632 2234556678999999999999 5578899999999999999
Q ss_pred CCcee--EeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeec-CCCEEEEEeC
Q 019847 88 ETSKL--VRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSN-EGNLLASGGD 164 (335)
Q Consensus 88 ~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~ 164 (335)
+++.. +.........+..+.|+. +...++.+..=|...+||+++++.....+..|...|.+++++| ...+||+++.
T Consensus 265 ~~~i~e~v~s~~~d~~~fs~~d~~~-e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~ 343 (498)
T KOG4328|consen 265 EGNISEEVLSLDTDNIWFSSLDFSA-ESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASL 343 (498)
T ss_pred cchhhHHHhhcCccceeeeeccccC-CCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeeccc
Confidence 87643 333333556778888988 6666777777779999999998876777788999999999999 5678999999
Q ss_pred CCeEEEEEccCCCcccc-eeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEEC----CCCceEEEeecCC-----
Q 019847 165 DNVVRIWERSKMSSSKS-LHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNV----QKGTCIHGIDAKA----- 234 (335)
Q Consensus 165 dg~i~iwd~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~----~~~~~~~~~~~~~----- 234 (335)
|++.+|||++....... +.....|...|.+..|+|.+..+++++ .|..|+|||. ....+...+.+..
T Consensus 344 D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~---~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~Rw 420 (498)
T KOG4328|consen 344 DQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTC---QDNEIRVFDSSCISAKDEPLGTIPHNNRTGRW 420 (498)
T ss_pred CcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeec---cCCceEEeecccccccCCccceeeccCccccc
Confidence 99999999998766553 444556999999999999999977777 7999999998 4555666666543
Q ss_pred -cEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCC-ceeEe-EEcCCCCEEEEE-eCCCcEEEEec
Q 019847 235 -QICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNS-RILDL-SQSPDGLTVATA-GADETIRFWEA 310 (335)
Q Consensus 235 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~-~i~~~-~~~~~~~~l~~~-~~dg~v~iw~~ 310 (335)
......|.|+..++++|. --..|-|+|-..++.+..+..... .|.++ .|+|-+..+++| +..|.|+||--
T Consensus 421 lT~fKA~W~P~~~li~vg~------~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~ 494 (498)
T KOG4328|consen 421 LTPFKAAWDPDYNLIVVGR------YPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTN 494 (498)
T ss_pred ccchhheeCCCccEEEEec------cCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEec
Confidence 345678999999999884 367799999988887777654443 55554 799988745555 56788888854
Q ss_pred C
Q 019847 311 F 311 (335)
Q Consensus 311 ~ 311 (335)
+
T Consensus 495 k 495 (498)
T KOG4328|consen 495 K 495 (498)
T ss_pred C
Confidence 4
No 109
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=1.3e-28 Score=204.58 Aligned_cols=300 Identities=15% Similarity=0.221 Sum_probs=235.7
Q ss_pred eeeeecC--CceEEEecCCeEEEEEecCCc-eeeEEeecCCCCCceEEEEcCC-----------CCEEEEEECCCcEEEE
Q 019847 20 KVIDWGR--NNVLAVALGPVLFLWKWENGK-VKKLLQVPGEDDYPTSVSWSHD-----------AKTLAVGYMDSKLQLW 85 (335)
Q Consensus 20 ~~~~~~~--~~~~~~~~~~~i~vw~~~~~~-~~~~~~~~~~~~~v~~~~~~~~-----------~~~l~~~~~dg~i~iw 85 (335)
-++.|++ +.+.++-.|..++|||++.-+ ..+...+-.|...|+.+.--|. ..-+.+++.|++|++|
T Consensus 328 IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW 407 (1080)
T KOG1408|consen 328 IACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLW 407 (1080)
T ss_pred eEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEe
Confidence 3455665 467777799999999998643 3344445568877877766551 2358899999999999
Q ss_pred eCCCce---eE----------ee------------------------ecccccceeEeeecCCCCCEEEEeeCCCcEEEE
Q 019847 86 DAETSK---LV----------RN------------------------LEGHHRRVATSSWNHWNGHILTSGSKDKSIINH 128 (335)
Q Consensus 86 ~~~~~~---~~----------~~------------------------~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~ 128 (335)
+++.+. .. +. .-.....+.+++.+| ++.+|++|..-|++++|
T Consensus 408 ~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp-~gqhLAsGDr~GnlrVy 486 (1080)
T KOG1408|consen 408 DLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSP-DGQHLASGDRGGNLRVY 486 (1080)
T ss_pred ecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECC-CcceecccCccCceEEE
Confidence 987521 10 00 011234799999999 99999999999999999
Q ss_pred ecccCCeeeEEeecCCCCEEEEEeec---CCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCC--Cc
Q 019847 129 DVRVSNNVTSCIKAHSGEVCGLKWSN---EGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQ--VN 203 (335)
Q Consensus 129 d~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~ 203 (335)
++..-.. ......|+..|.|+.|+. ..++||+++.|.-|.+||+... ...++++.+|...|+++.|...| ..
T Consensus 487 ~Lq~l~~-~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn--y~l~qtld~HSssITsvKFa~~gln~~ 563 (1080)
T KOG1408|consen 487 DLQELEY-TCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN--YDLVQTLDGHSSSITSVKFACNGLNRK 563 (1080)
T ss_pred Eehhhhh-hhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc--cchhhhhcccccceeEEEEeecCCceE
Confidence 9985543 556788999999999986 4579999999999999998754 45678889999999999998877 44
Q ss_pred EEEEecCCCCCeEEEEECCCCceEEEe------ecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecc
Q 019847 204 VLATGGGREDGCIKIWNVQKGTCIHGI------DAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGEL 277 (335)
Q Consensus 204 ~~~~~~g~~d~~i~i~d~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~ 277 (335)
++.+| .|..|.+--.++......+ ..+..+..++..|..++++++ +.|..|+||++.++++.+.|
T Consensus 564 MiscG---ADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~------cQDrnirif~i~sgKq~k~F 634 (1080)
T KOG1408|consen 564 MISCG---ADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTV------CQDRNIRIFDIESGKQVKSF 634 (1080)
T ss_pred EEecc---CchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEE------ecccceEEEeccccceeeee
Confidence 55555 5777665433322111111 124578999999999999988 67999999999999999998
Q ss_pred cC---CCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCccccccccccceec
Q 019847 278 QS---SNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDEDSVSHLAGLVSLKTS 332 (335)
Q Consensus 278 ~~---~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~i~~~~~~ 332 (335)
++ |.+....+...|.|.||++...|.++.++|+..++....+.+|...|.+++|.
T Consensus 635 Kgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~ 692 (1080)
T KOG1408|consen 635 KGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFL 692 (1080)
T ss_pred cccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeec
Confidence 75 66678889999999999999999999999999999999999999999999885
No 110
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=9.8e-29 Score=193.69 Aligned_cols=261 Identities=17% Similarity=0.277 Sum_probs=214.3
Q ss_pred CCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeE
Q 019847 59 DYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTS 138 (335)
Q Consensus 59 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~ 138 (335)
..+.++...|....+++|+.|..+.++|...++.+..+++|...|+.+.++| +...+++++.|..|++|....... ..
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~-~~~~v~~aSad~~i~vws~~~~s~-~~ 297 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHK-DLDTVITASADEIIRVWSVPLSSE-PT 297 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEecc-chhheeecCCcceEEeeccccccC-cc
Confidence 4578888888878999999999999999999999999999999999999999 999999999999999999986554 55
Q ss_pred EeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEE
Q 019847 139 CIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKI 218 (335)
Q Consensus 139 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i 218 (335)
....|..+|+.+..+|.|.||++++.||+..+.|++++........ ....-.+++.+|+||| .++.+|. .|+.+++
T Consensus 298 ~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~-~~s~v~~ts~~fHpDg-Lifgtgt--~d~~vki 373 (506)
T KOG0289|consen 298 SSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSD-ETSDVEYTSAAFHPDG-LIFGTGT--PDGVVKI 373 (506)
T ss_pred ccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEee-ccccceeEEeeEcCCc-eEEeccC--CCceEEE
Confidence 5678999999999999999999999999999999988654322221 1223458999999999 5777766 9999999
Q ss_pred EECCCCceEEEeecC-CcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCC-CceeEeEEcCCCCEE
Q 019847 219 WNVQKGTCIHGIDAK-AQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSN-SRILDLSQSPDGLTV 296 (335)
Q Consensus 219 ~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l 296 (335)
||+.++..+..|..+ ++|..++|+.+|-+++++ .+|+.|++||++..+...++.-.. .++.++.|.+.|.+|
T Consensus 374 wdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~------add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L 447 (506)
T KOG0289|consen 374 WDLKSQTNVAKFPGHTGPVKAISFSENGYWLATA------ADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYL 447 (506)
T ss_pred EEcCCccccccCCCCCCceeEEEeccCceEEEEE------ecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeE
Confidence 999999988888865 589999999999999988 789999999999988877776433 369999999999999
Q ss_pred EEEeCCCcEEEEecCCC--CCCCCcccccccccccee
Q 019847 297 ATAGADETIRFWEAFGP--SGDEDSVSHLAGLVSLKT 331 (335)
Q Consensus 297 ~~~~~dg~v~iw~~~~~--~~~~~~~~~~~~i~~~~~ 331 (335)
+.++.|=.|++++-... .+......|.+....+.|
T Consensus 448 ~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~F 484 (506)
T KOG0289|consen 448 GIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRF 484 (506)
T ss_pred EeecceeEEEEEecccccceeeehhhhcccccceeee
Confidence 99988766666664333 333344445443433333
No 111
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4.8e-29 Score=181.54 Aligned_cols=255 Identities=22% Similarity=0.324 Sum_probs=202.3
Q ss_pred cCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCc---eeEeeecccccceeEeee-cCCCCCEEEEeeCCCcEEEEec
Q 019847 55 PGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETS---KLVRNLEGHHRRVATSSW-NHWNGHILTSGSKDKSIINHDV 130 (335)
Q Consensus 55 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~---~~~~~~~~~~~~v~~~~~-~~~~~~~l~~~~~dg~i~~~d~ 130 (335)
..|.+.|..+...--|++||+++.|++|+|+.++.. +++.++.+|.++|..++| +|.-+.+|++++.||.|.+|.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 468889999888889999999999999999999754 568889999999999999 4567899999999999999998
Q ss_pred ccCCe-eeEEeecCCCCEEEEEeec--CCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCC---C---
Q 019847 131 RVSNN-VTSCIKAHSGEVCGLKWSN--EGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPH---Q--- 201 (335)
Q Consensus 131 ~~~~~-~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~--- 201 (335)
+++.- .......|...|++++|.| -|-.|++++.||.|.+.+.+........+....|.-.|++++|.|. |
T Consensus 88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~ 167 (299)
T KOG1332|consen 88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV 167 (299)
T ss_pred CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence 76532 1234567999999999999 4678999999999999998876444455566789999999999996 3
Q ss_pred -------CcEEEEecCCCCCeEEEEECCCCce--EEEeecC-CcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCC
Q 019847 202 -------VNVLATGGGREDGCIKIWNVQKGTC--IHGIDAK-AQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNM 271 (335)
Q Consensus 202 -------~~~~~~~~g~~d~~i~i~d~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~ 271 (335)
.+-+++++ .|+.|+||+..+++- ..+++.+ .-+..++|.|.-.+.-+. +++++.||++.||..+..
T Consensus 168 ~~~~~~~~krlvSgG--cDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~--iAS~SqDg~viIwt~~~e 243 (299)
T KOG1332|consen 168 DQGPAAKVKRLVSGG--CDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKST--IASCSQDGTVIIWTKDEE 243 (299)
T ss_pred ccCcccccceeeccC--CccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCcee--eEEecCCCcEEEEEecCc
Confidence 12366665 899999999988632 2334443 468999999986543332 556699999999987632
Q ss_pred c---eeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCC
Q 019847 272 T---KVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGP 313 (335)
Q Consensus 272 ~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~ 313 (335)
. ....++.....+..+.||..|++|+.++.|+.|.+|.-...
T Consensus 244 ~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~ 288 (299)
T KOG1332|consen 244 YEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVD 288 (299)
T ss_pred cCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCC
Confidence 1 11223445667999999999999999999999999986654
No 112
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=3.4e-27 Score=170.41 Aligned_cols=245 Identities=19% Similarity=0.339 Sum_probs=199.7
Q ss_pred CCCCCceEEEEcCCCCEEEEEECCCcEEEEeCC------Cc---------eeEeeecccccceeEeeecCCCCCEEEEee
Q 019847 56 GEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAE------TS---------KLVRNLEGHHRRVATSSWNHWNGHILTSGS 120 (335)
Q Consensus 56 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~------~~---------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 120 (335)
.....|.+++|+|.|.+.++|+...+++|-... .+ -..+.-+.|.+.|.|.+|+| .+.++++|+
T Consensus 30 ~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~-~geliatgs 108 (350)
T KOG0641|consen 30 EDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSP-CGELIATGS 108 (350)
T ss_pred cchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecC-ccCeEEecC
Confidence 346789999999999999999999999887432 11 11223456889999999999 999999999
Q ss_pred CCCcEEEEecccCCe----eeEEeecCCCCEEEEEeec----CCCEEEEEe-CCCeEEEEEccCCCcccceeeccCCCCC
Q 019847 121 KDKSIINHDVRVSNN----VTSCIKAHSGEVCGLKWSN----EGNLLASGG-DDNVVRIWERSKMSSSKSLHRFTDHCGG 191 (335)
Q Consensus 121 ~dg~i~~~d~~~~~~----~~~~~~~~~~~i~~~~~~~----~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 191 (335)
.|.+|++...+.... .-..+..|.+.|..++|-. .+.+|++++ .|..|++-|... .+.++.+.+|.+.
T Consensus 109 ndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~---g~~~~a~sghtgh 185 (350)
T KOG0641|consen 109 NDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGR---GQGFHALSGHTGH 185 (350)
T ss_pred CCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCC---CCcceeecCCccc
Confidence 999999987754322 1234667999999999965 355777765 466777777554 5668888999999
Q ss_pred eeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec--------CCcEeEEEeCCCCceeeeeeeeeeecCCCeE
Q 019847 192 VKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA--------KAQICGLEWNRHHKEILSGHGFSASGDGNKL 263 (335)
Q Consensus 192 v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 263 (335)
|.++- +-++ .++++++ .|.+|++||++-..++..+.. ...+.+++..|.|+.+++| -.|...
T Consensus 186 ilaly-swn~-~m~~sgs--qdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg------~~dssc 255 (350)
T KOG0641|consen 186 ILALY-SWNG-AMFASGS--QDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASG------HADSSC 255 (350)
T ss_pred EEEEE-EecC-cEEEccC--CCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeec------cCCCce
Confidence 98763 2223 6888876 999999999999988887753 1468999999999999998 569999
Q ss_pred EEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCC
Q 019847 264 CLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPS 314 (335)
Q Consensus 264 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~ 314 (335)
.+||++.++.++.+..|...|.++.|+|...||++++.|..|++=|+.+.-
T Consensus 256 ~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdl 306 (350)
T KOG0641|consen 256 MLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDL 306 (350)
T ss_pred EEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccch
Confidence 999999999999999999999999999999999999999999999998753
No 113
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.97 E-value=1.6e-28 Score=201.19 Aligned_cols=282 Identities=20% Similarity=0.295 Sum_probs=213.2
Q ss_pred CceEEEe-cCCeEEEEEecCCcee----eEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEee--eccc
Q 019847 27 NNVLAVA-LGPVLFLWKWENGKVK----KLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRN--LEGH 99 (335)
Q Consensus 27 ~~~~~~~-~~~~i~vw~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~--~~~~ 99 (335)
..+++.+ .+|.|.++|....... +......|...|..+.|-|....|++++.|.++++||+++.++... +.+|
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH 143 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGH 143 (720)
T ss_pred cceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeeccc
Confidence 3566554 7899999998765443 1234468999999999999777899999999999999999988877 8899
Q ss_pred ccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCe--------------------------eeEEeecCCCCEEE---E
Q 019847 100 HRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNN--------------------------VTSCIKAHSGEVCG---L 150 (335)
Q Consensus 100 ~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~--------------------------~~~~~~~~~~~i~~---~ 150 (335)
...|.+++|.|.+...|++|+.||.|.+||++.... -......+...|.+ +
T Consensus 144 ~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTv 223 (720)
T KOG0321|consen 144 TGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTV 223 (720)
T ss_pred ccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEE
Confidence 999999999999999999999999999999964330 00111234444554 5
Q ss_pred EeecCCCEEEEEeC-CCeEEEEEccCCCcccc-----eeeccCC---CCCeeEEEecCCCCcEEEEecCCCCCeEEEEEC
Q 019847 151 KWSNEGNLLASGGD-DNVVRIWERSKMSSSKS-----LHRFTDH---CGGVKALAWSPHQVNVLATGGGREDGCIKIWNV 221 (335)
Q Consensus 151 ~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~-----~~~~~~~---~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~ 221 (335)
.+..|...||+++. |+.|++||++....... ...+..| .-.+.++.....|.++++.| .|+.|++||+
T Consensus 224 v~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsC---tD~sIy~ynm 300 (720)
T KOG0321|consen 224 VLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASC---TDNSIYFYNM 300 (720)
T ss_pred EEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEe---cCCcEEEEec
Confidence 55668889999888 99999999997543211 1122223 33578888888999999998 5999999999
Q ss_pred CCCc--eEEEeecC---CcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCce-eecccCCCCceeEeEEcCCC-C
Q 019847 222 QKGT--CIHGIDAK---AQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTK-VGELQSSNSRILDLSQSPDG-L 294 (335)
Q Consensus 222 ~~~~--~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~-~~~~~~~~~~i~~~~~~~~~-~ 294 (335)
..-. ++..+.+. ..-..-..+|++.++++| +.|...++|.+.+.+. ...+.+|...|++++|.|.. .
T Consensus 301 ~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~Sg------Ssd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t 374 (720)
T KOG0321|consen 301 RSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSG------SSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATT 374 (720)
T ss_pred cccCcCchhhccCcccceeeeeeecCCCCceEecc------CCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCC
Confidence 8643 22222221 122334568999999988 7799999999988654 55677999999999998843 3
Q ss_pred EEEEEeCCCcEEEEecCCCCCCC
Q 019847 295 TVATAGADETIRFWEAFGPSGDE 317 (335)
Q Consensus 295 ~l~~~~~dg~v~iw~~~~~~~~~ 317 (335)
-+++++.|..+++|++..+-...
T Consensus 375 ~v~TcSdD~~~kiW~l~~~l~e~ 397 (720)
T KOG0321|consen 375 PVATCSDDFRVKIWRLSNGLEEI 397 (720)
T ss_pred CceeeccCcceEEEeccCchhhc
Confidence 47778999999999997654433
No 114
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.97 E-value=2.4e-28 Score=182.76 Aligned_cols=287 Identities=18% Similarity=0.304 Sum_probs=219.5
Q ss_pred cccccceeeeecC---CceEEEecCCeEEEEEecCCce----------ee---EEeecCCCCCceEEEEcC-CCCEEEEE
Q 019847 14 MEDYYSKVIDWGR---NNVLAVALGPVLFLWKWENGKV----------KK---LLQVPGEDDYPTSVSWSH-DAKTLAVG 76 (335)
Q Consensus 14 ~~~~~~~~~~~~~---~~~~~~~~~~~i~vw~~~~~~~----------~~---~~~~~~~~~~v~~~~~~~-~~~~l~~~ 76 (335)
++...++++...+ ..+++++.||.|.+||++.... +. ...-.+|.-.|..+.|-| |..++.++
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss 120 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS 120 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence 3456677777766 3688888999999999976431 11 111246888999999999 67788899
Q ss_pred ECCCcEEEEeCCCceeEeeecccccceeEeeecCCC--CCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeec
Q 019847 77 YMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWN--GHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSN 154 (335)
Q Consensus 77 ~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~ 154 (335)
+.|.+++|||.++.+....|+ .++.|.+-+++|-. ..++++|..+-.|++.|+..+. ....+.+|.+.|.++.|+|
T Consensus 121 SFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs-~sH~LsGHr~~vlaV~Wsp 198 (397)
T KOG4283|consen 121 SFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGS-FSHTLSGHRDGVLAVEWSP 198 (397)
T ss_pred cccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCc-ceeeeccccCceEEEEecc
Confidence 999999999999998888887 56788888888732 3578888899999999999655 5778999999999999999
Q ss_pred CCC-EEEEEeCCCeEEEEEccCCC------------cccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEEC
Q 019847 155 EGN-LLASGGDDNVVRIWERSKMS------------SSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNV 221 (335)
Q Consensus 155 ~~~-~l~~~~~dg~i~iwd~~~~~------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~ 221 (335)
... .|++|+.||.|++||++... ....++.-..|.+.+..++|..++.+++.++ .|..+++|+.
T Consensus 199 ~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~g---td~r~r~wn~ 275 (397)
T KOG4283|consen 199 SSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCG---TDDRIRVWNM 275 (397)
T ss_pred CceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhcc---CccceEEeec
Confidence 554 67899999999999998641 1222334557889999999999998887776 6999999999
Q ss_pred CCCceEEE-ee--cCCcEeEEEe---CCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCE
Q 019847 222 QKGTCIHG-ID--AKAQICGLEW---NRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLT 295 (335)
Q Consensus 222 ~~~~~~~~-~~--~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 295 (335)
.+|+.... +- .++.-...++ +.+...+ ++. -.++.+.++.+-.+..+..+..|...|.+.++.|+-+.
T Consensus 276 ~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vf-v~~-----p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~ 349 (397)
T KOG4283|consen 276 ESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVF-VLF-----PNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQ 349 (397)
T ss_pred ccCcccccccccccccccccceEEEeecccceE-EEE-----ecCCeEEEEEccCceEEEeeecccceeeEEeecCchhh
Confidence 98864221 10 0111111111 1222211 111 33699999999999999999999889999999999889
Q ss_pred EEEEeCCCcEEEEecC
Q 019847 296 VATAGADETIRFWEAF 311 (335)
Q Consensus 296 l~~~~~dg~v~iw~~~ 311 (335)
..+|..|+.+..|-..
T Consensus 350 ~~tg~~d~ni~~w~p~ 365 (397)
T KOG4283|consen 350 CFTGDMNGNIYMWSPA 365 (397)
T ss_pred hhccccCCcccccccc
Confidence 9999999999999873
No 115
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.6e-28 Score=201.91 Aligned_cols=239 Identities=21% Similarity=0.418 Sum_probs=202.5
Q ss_pred cccceeeeecC--CceEEEecCCeEEEEEecCCceeeEEeecC-CCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCcee
Q 019847 16 DYYSKVIDWGR--NNVLAVALGPVLFLWKWENGKVKKLLQVPG-EDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKL 92 (335)
Q Consensus 16 ~~~~~~~~~~~--~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 92 (335)
...++++.|++ +.++++..+|.|.|||..+.+..+ .+.+ |...|-+++|+ +..+.+|+.|+.|..+|++..+.
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~--~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~ 292 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTR--TLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQH 292 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccc--cccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchh
Confidence 56788899997 356666789999999998776544 4445 99999999997 66899999999999999998766
Q ss_pred Eee-ecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeec-CCCEEEEEe--CCCeE
Q 019847 93 VRN-LEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSN-EGNLLASGG--DDNVV 168 (335)
Q Consensus 93 ~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~--~dg~i 168 (335)
... +.+|...|..++|++ ++.++++|+.|+.+.|||..... +...+..|..+|.+++|+| ...+||+|+ .|+.|
T Consensus 293 ~~~~~~~H~qeVCgLkws~-d~~~lASGgnDN~~~Iwd~~~~~-p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i 370 (484)
T KOG0305|consen 293 VVSTLQGHRQEVCGLKWSP-DGNQLASGGNDNVVFIWDGLSPE-PKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCI 370 (484)
T ss_pred hhhhhhcccceeeeeEECC-CCCeeccCCCccceEeccCCCcc-ccEEEeccceeeeEeeeCCCccCceEEcCCCcccEE
Confidence 555 888999999999999 99999999999999999996444 4666788999999999999 778899874 69999
Q ss_pred EEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecC-CcEeEEEeCCCCce
Q 019847 169 RIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAK-AQICGLEWNRHHKE 247 (335)
Q Consensus 169 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 247 (335)
++||..++. .+.... ..+.|..|.|++..+.++++- |..++.|.||+..+.+.+..+..| ..|..++++|+|..
T Consensus 371 ~fwn~~~g~---~i~~vd-tgsQVcsL~Wsk~~kEi~sth-G~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~ 445 (484)
T KOG0305|consen 371 KFWNTNTGA---RIDSVD-TGSQVCSLIWSKKYKELLSTH-GYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGET 445 (484)
T ss_pred EEEEcCCCc---Eecccc-cCCceeeEEEcCCCCEEEEec-CCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCE
Confidence 999988643 344433 467899999999998787776 678899999999998888888765 57999999999999
Q ss_pred eeeeeeeeeecCCCeEEEEECCCC
Q 019847 248 ILSGHGFSASGDGNKLCLWKYPNM 271 (335)
Q Consensus 248 ~~~~~~~~~~~~~~~i~i~d~~~~ 271 (335)
++++ +.|.++++|++-..
T Consensus 446 i~t~------a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 446 IVTG------AADETLRFWNLFDE 463 (484)
T ss_pred EEEe------cccCcEEeccccCC
Confidence 9988 77999999998664
No 116
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=7e-29 Score=180.70 Aligned_cols=240 Identities=23% Similarity=0.402 Sum_probs=196.1
Q ss_pred eeeecCCceEEEecCCeEEEEEecCCce-eeEEeecCCCCCceEEEEcC--CCCEEEEEECCCcEEEEeCCCcee--Eee
Q 019847 21 VIDWGRNNVLAVALGPVLFLWKWENGKV-KKLLQVPGEDDYPTSVSWSH--DAKTLAVGYMDSKLQLWDAETSKL--VRN 95 (335)
Q Consensus 21 ~~~~~~~~~~~~~~~~~i~vw~~~~~~~-~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~--~~~ 95 (335)
.+++.+.+++++++|++|+|+..+.+.. ..+.++.+|.++|..++|.. .|.+||+++.||.|.||.-++++- ...
T Consensus 18 ~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e 97 (299)
T KOG1332|consen 18 QLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYE 97 (299)
T ss_pred hhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhh
Confidence 4677888999999999999999987654 67788999999999999976 899999999999999999887743 445
Q ss_pred ecccccceeEeeecCCC-CCEEEEeeCCCcEEEEecccCC--eeeEEeecCCCCEEEEEeecC---C-----------CE
Q 019847 96 LEGHHRRVATSSWNHWN-GHILTSGSKDKSIINHDVRVSN--NVTSCIKAHSGEVCGLKWSNE---G-----------NL 158 (335)
Q Consensus 96 ~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~--~~~~~~~~~~~~i~~~~~~~~---~-----------~~ 158 (335)
...|...|++++|.|.+ +-.|++++.||.|.+.+.+... ...+....|.-.|++++|.|. | +.
T Consensus 98 ~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~kr 177 (299)
T KOG1332|consen 98 HAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKR 177 (299)
T ss_pred hhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccce
Confidence 66899999999999843 4578899999999999988652 234456689999999999985 4 56
Q ss_pred EEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCC---CcEEEEecCCCCCeEEEEECCCCce--EEEe--e
Q 019847 159 LASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQ---VNVLATGGGREDGCIKIWNVQKGTC--IHGI--D 231 (335)
Q Consensus 159 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~~~~~g~~d~~i~i~d~~~~~~--~~~~--~ 231 (335)
|++|+.|..|+||+.... ....-..+.+|.+.|+.++|.|.- ...+++++ +||++.||-.+.... ..++ +
T Consensus 178 lvSgGcDn~VkiW~~~~~-~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~S--qDg~viIwt~~~e~e~wk~tll~~ 254 (299)
T KOG1332|consen 178 LVSGGCDNLVKIWKFDSD-SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCS--QDGTVIIWTKDEEYEPWKKTLLEE 254 (299)
T ss_pred eeccCCccceeeeecCCc-chhhhhhhhhcchhhhhhhhccccCCCceeeEEec--CCCcEEEEEecCccCccccccccc
Confidence 999999999999998865 445556689999999999999974 34677777 999999998763211 1111 1
Q ss_pred cCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECC
Q 019847 232 AKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYP 269 (335)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~ 269 (335)
.+..+..+.|++.|..|+++ +.|+.+.+|.-.
T Consensus 255 f~~~~w~vSWS~sGn~LaVs------~GdNkvtlwke~ 286 (299)
T KOG1332|consen 255 FPDVVWRVSWSLSGNILAVS------GGDNKVTLWKEN 286 (299)
T ss_pred CCcceEEEEEeccccEEEEe------cCCcEEEEEEeC
Confidence 35679999999999999887 679999999743
No 117
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=7.3e-29 Score=198.50 Aligned_cols=258 Identities=17% Similarity=0.249 Sum_probs=194.2
Q ss_pred EEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCce----eEeeec-ccccceeEeeecCCCCCEEEEeeCCCcE
Q 019847 51 LLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSK----LVRNLE-GHHRRVATSSWNHWNGHILTSGSKDKSI 125 (335)
Q Consensus 51 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~----~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i 125 (335)
.+.+++|+..|.++++.|.|-+|++|+.|..|++||+.... ..+.+. .....|.++.|++ .++.|++.+.....
T Consensus 160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~-Tg~~iLvvsg~aqa 238 (641)
T KOG0772|consen 160 EIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSV-TGDQILVVSGSAQA 238 (641)
T ss_pred eEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecC-CCCeEEEEecCcce
Confidence 45678899999999999999999999999999999997532 222332 2345799999999 88888888888999
Q ss_pred EEEecccCCeeeE------------EeecCCCCEEEEEeec-CCCEEEEEeCCCeEEEEEccCCCcccceeec---cCCC
Q 019847 126 INHDVRVSNNVTS------------CIKAHSGEVCGLKWSN-EGNLLASGGDDNVVRIWERSKMSSSKSLHRF---TDHC 189 (335)
Q Consensus 126 ~~~d~~~~~~~~~------------~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~ 189 (335)
+++|-. +..+.. ..++|...+++.+|+| +...+++++.||++++||++.......+... .+..
T Consensus 239 kl~DRd-G~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~R 317 (641)
T KOG0772|consen 239 KLLDRD-GFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKR 317 (641)
T ss_pred eEEccC-CceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcc
Confidence 999975 333222 2457899999999999 4568999999999999999876443222221 2334
Q ss_pred CCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCce--EEEee--c--CCcEeEEEeCCCCceeeeeeeeeeecCCCeE
Q 019847 190 GGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTC--IHGID--A--KAQICGLEWNRHHKEILSGHGFSASGDGNKL 263 (335)
Q Consensus 190 ~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~--~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 263 (335)
-+++.++|+|+++. ++++. .||.|.+|+..+... ...+. + +..|+++.||++|++|++- +.|+++
T Consensus 318 v~~tsC~~nrdg~~-iAagc--~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSR------g~D~tL 388 (641)
T KOG0772|consen 318 VPVTSCAWNRDGKL-IAAGC--LDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSR------GFDDTL 388 (641)
T ss_pred cCceeeecCCCcch-hhhcc--cCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhc------cCCCce
Confidence 56889999999976 55544 899999999865432 22221 2 3479999999999999987 789999
Q ss_pred EEEECCCCc-eeecccCCC--CceeEeEEcCCCCEEEEEe------CCCcEEEEecCCCCCCCCc
Q 019847 264 CLWKYPNMT-KVGELQSSN--SRILDLSQSPDGLTVATAG------ADETIRFWEAFGPSGDEDS 319 (335)
Q Consensus 264 ~i~d~~~~~-~~~~~~~~~--~~i~~~~~~~~~~~l~~~~------~dg~v~iw~~~~~~~~~~~ 319 (335)
++||+++.+ ++....+-. -+-+.++|||+.++|++|+ ..|.+.+||..+.....++
T Consensus 389 KvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki 453 (641)
T KOG0772|consen 389 KVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKI 453 (641)
T ss_pred eeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEe
Confidence 999998854 444443322 2457899999999999986 3577999987766555443
No 118
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=7.1e-28 Score=205.02 Aligned_cols=241 Identities=17% Similarity=0.283 Sum_probs=202.8
Q ss_pred CCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCc-eeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCC
Q 019847 56 GEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETS-KLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSN 134 (335)
Q Consensus 56 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~ 134 (335)
.|+..-+.++|.|+|++|++++.||.|++|+.... +....+..+...|.+++. ..+.|++|+.+++|.+|.+..+.
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~---~s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC---YSNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee---cccceEEeeccceEEEeeCCCCC
Confidence 57888899999999999999999999999997765 555555557788888887 56699999999999999998665
Q ss_pred eeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCC
Q 019847 135 NVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDG 214 (335)
Q Consensus 135 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~ 214 (335)
. -..+....-++++++|+.+|+++|.|+.|-.|++-++.+. .....+.+|.++|.++.|+|.+..++++. -||
T Consensus 88 ~-~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~---s~~~~lrgh~apVl~l~~~p~~~fLAvss---~dG 160 (933)
T KOG1274|consen 88 E-DTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDS---SQEKVLRGHDAPVLQLSYDPKGNFLAVSS---CDG 160 (933)
T ss_pred c-cceeeeeeccceEEEEecCCcEEEeecCceeEEEEecccc---chheeecccCCceeeeeEcCCCCEEEEEe---cCc
Confidence 4 3345557788999999999999999999999999997764 34677789999999999999996555544 699
Q ss_pred eEEEEECCCCceEEEeec---------CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccC--CCCc
Q 019847 215 CIKIWNVQKGTCIHGIDA---------KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQS--SNSR 283 (335)
Q Consensus 215 ~i~i~d~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~--~~~~ 283 (335)
.|++||++++.+...+.. ...+..++|+|++..++.. ..|+.|++|+..++++...+.. +...
T Consensus 161 ~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~------~~d~~Vkvy~r~~we~~f~Lr~~~~ss~ 234 (933)
T KOG1274|consen 161 KVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVP------PVDNTVKVYSRKGWELQFKLRDKLSSSK 234 (933)
T ss_pred eEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEee------ccCCeEEEEccCCceeheeecccccccc
Confidence 999999999887766642 2357789999997777655 5699999999999988877653 4445
Q ss_pred eeEeEEcCCCCEEEEEeCCCcEEEEecCC
Q 019847 284 ILDLSQSPDGLTVATAGADETIRFWEAFG 312 (335)
Q Consensus 284 i~~~~~~~~~~~l~~~~~dg~v~iw~~~~ 312 (335)
+..++|+|+|+|||+++.||.|.|||.++
T Consensus 235 ~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 235 FSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred eEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 99999999999999999999999999996
No 119
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.97 E-value=2.8e-28 Score=187.94 Aligned_cols=223 Identities=26% Similarity=0.505 Sum_probs=182.0
Q ss_pred CceEEEe--cCCeEEEEEecC--------------CceeeEEeecCCCCCceEEEEcC-CCCEEEEEECCCcEEEEeCCC
Q 019847 27 NNVLAVA--LGPVLFLWKWEN--------------GKVKKLLQVPGEDDYPTSVSWSH-DAKTLAVGYMDSKLQLWDAET 89 (335)
Q Consensus 27 ~~~~~~~--~~~~i~vw~~~~--------------~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~ 89 (335)
+..++++ ..|.|+||++.. .+..+++++.+|...=+.++||| ....|++|.--+.|++|...+
T Consensus 164 ~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~ 243 (440)
T KOG0302|consen 164 NEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPST 243 (440)
T ss_pred CcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeecc
Confidence 4445544 679999999752 23456788899999999999999 333588888888999999988
Q ss_pred ceeE---eeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCe-eeEEeecCCCCEEEEEeecCCCEEEEEeCC
Q 019847 90 SKLV---RNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNN-VTSCIKAHSGEVCGLKWSNEGNLLASGGDD 165 (335)
Q Consensus 90 ~~~~---~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 165 (335)
+.-. ..+.+|...|-.++|+|.....|++|+.||+|+|||++.+.+ .....+.|.+.|+.|.|+....+||+|+.|
T Consensus 244 g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~Dd 323 (440)
T KOG0302|consen 244 GSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDD 323 (440)
T ss_pred CceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCC
Confidence 7543 346679999999999999999999999999999999997732 233447899999999999988899999999
Q ss_pred CeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCC-------------------ce
Q 019847 166 NVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKG-------------------TC 226 (335)
Q Consensus 166 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-------------------~~ 226 (335)
|+++|||+|..+..+++..++.|..+|+++.|+|.....+++++ .|.+|.+||+.-. ++
T Consensus 324 Gt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg--~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQL 401 (440)
T KOG0302|consen 324 GTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASG--EDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQL 401 (440)
T ss_pred ceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEecc--CCCcEEEEEeeccCChhhhccccccchhcCCcee
Confidence 99999999998888999999999999999999999888888887 8999999998532 12
Q ss_pred EEEeecCCcEeEEEeCCCCceeeee
Q 019847 227 IHGIDAKAQICGLEWNRHHKEILSG 251 (335)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (335)
+........+..+.|+++-.-+++.
T Consensus 402 LFVHqGQke~KevhWH~QiPG~lvs 426 (440)
T KOG0302|consen 402 LFVHQGQKEVKEVHWHRQIPGLLVS 426 (440)
T ss_pred EEEecchhHhhhheeccCCCCeEEE
Confidence 2223344567788888887665544
No 120
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=4.9e-28 Score=182.93 Aligned_cols=259 Identities=22% Similarity=0.293 Sum_probs=191.1
Q ss_pred eEEEEEecCCceee---EEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCcee---------------------
Q 019847 37 VLFLWKWENGKVKK---LLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKL--------------------- 92 (335)
Q Consensus 37 ~i~vw~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~--------------------- 92 (335)
...-|+.+..+... ...+.+|...|++++|+.||++|++++.|++|++|+++..+.
T Consensus 62 r~~~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~Fa 141 (420)
T KOG2096|consen 62 RNDQWKAKQPTFVHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFA 141 (420)
T ss_pred chhhhcccCCCcccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEEC
Confidence 35556655444322 234579999999999999999999999999999999753210
Q ss_pred ---------------Eeee-----------------------cccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCC
Q 019847 93 ---------------VRNL-----------------------EGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSN 134 (335)
Q Consensus 93 ---------------~~~~-----------------------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~ 134 (335)
+..+ +.|.-.+..+-... ++.+|++++.|..|.+|+++ ++
T Consensus 142 pDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~-~~k~imsas~dt~i~lw~lk-Gq 219 (420)
T KOG2096|consen 142 PDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG-NAKYIMSASLDTKICLWDLK-GQ 219 (420)
T ss_pred CCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecC-CceEEEEecCCCcEEEEecC-Cc
Confidence 0000 00112222333333 56789999999999999997 44
Q ss_pred eeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCC-----CcccceeeccCCCCCeeEEEecCCCCcEEEEec
Q 019847 135 NVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKM-----SSSKSLHRFTDHCGGVKALAWSPHQVNVLATGG 209 (335)
Q Consensus 135 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 209 (335)
.+.........-+..+.+|+|+++++++.--.|++|.+--. +.......+.+|...|..++|+|+..++++++
T Consensus 220 -~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvS- 297 (420)
T KOG2096|consen 220 -LLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVS- 297 (420)
T ss_pred -eeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEe-
Confidence 45555555566677889999999999999999999986321 22344567889999999999999997766655
Q ss_pred CCCCCeEEEEECCC-------CceEEEee-----cCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecc
Q 019847 210 GREDGCIKIWNVQK-------GTCIHGID-----AKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGEL 277 (335)
Q Consensus 210 g~~d~~i~i~d~~~-------~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~ 277 (335)
.||++++||..- .+.++... .......+..+|.|+.++.+. ...+++|..++++...++
T Consensus 298 --kDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-------gs~l~~~~se~g~~~~~~ 368 (420)
T KOG2096|consen 298 --KDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-------GSDLKVFASEDGKDYPEL 368 (420)
T ss_pred --cCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-------CCceEEEEcccCccchhH
Confidence 899999999752 12222221 133455899999999998763 688999999998887776
Q ss_pred c-CCCCceeEeEEcCCCCEEEEEeCCCcEEEEe
Q 019847 278 Q-SSNSRILDLSQSPDGLTVATAGADETIRFWE 309 (335)
Q Consensus 278 ~-~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~ 309 (335)
+ .|...|.+++|+++|+++++++ |..+++..
T Consensus 369 e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 369 EDIHSTTISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred HHhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence 5 5888999999999999999987 56787775
No 121
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.4e-29 Score=210.15 Aligned_cols=247 Identities=19% Similarity=0.381 Sum_probs=197.5
Q ss_pred ccceeeeecC---CceEEEecCCeEEEEEecCC-ceeeEEeecCCCCCceEEEEcC-CCCEEEEEECCCcEEEEeCCCce
Q 019847 17 YYSKVIDWGR---NNVLAVALGPVLFLWKWENG-KVKKLLQVPGEDDYPTSVSWSH-DAKTLAVGYMDSKLQLWDAETSK 91 (335)
Q Consensus 17 ~~~~~~~~~~---~~~~~~~~~~~i~vw~~~~~-~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~ 91 (335)
+.+.-+.|+. +.+++++..|.|.+||+... .......+..|+..+.++.|++ ...+|++|+.||.|++||++..+
T Consensus 88 ~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~ 167 (839)
T KOG0269|consen 88 YSAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKK 167 (839)
T ss_pred eehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccc
Confidence 4455677875 45667778999999999762 2223445678999999999998 45788999999999999999998
Q ss_pred eEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEE
Q 019847 92 LVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIW 171 (335)
Q Consensus 92 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw 171 (335)
-...+.+....|+.++|+|..++.|+++...|.+++||++........+.+|.++|.++.|+|++.+||+|+.|+.|+||
T Consensus 168 S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiW 247 (839)
T KOG0269|consen 168 SKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIW 247 (839)
T ss_pred ccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEE
Confidence 88889889999999999999999999999999999999999888888899999999999999999999999999999999
Q ss_pred EccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCc-eEEEeec-CCcEeEEEeCCCCceee
Q 019847 172 ERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGT-CIHGIDA-KAQICGLEWNRHHKEIL 249 (335)
Q Consensus 172 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~ 249 (335)
|...... +.+.++. ...++.++.|-|...+.+++++.-.|-.|+|||++..- +..++.. ...++.++|......+
T Consensus 248 d~t~~~~-~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~- 324 (839)
T KOG0269|consen 248 DMTDSRA-KPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRIN- 324 (839)
T ss_pred eccCCCc-cceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCcee-
Confidence 9886433 3444443 45789999999999999999876678999999997643 3445544 4567788887633322
Q ss_pred eeeeeeeecCCCeEEEEECCC
Q 019847 250 SGHGFSASGDGNKLCLWKYPN 270 (335)
Q Consensus 250 ~~~~~~~~~~~~~i~i~d~~~ 270 (335)
+.+++.|+.+..-..++
T Consensus 325 ----l~s~sKD~tv~qh~~kn 341 (839)
T KOG0269|consen 325 ----LWSCSKDGTVLQHLFKN 341 (839)
T ss_pred ----eEeecCccHHHHhhhhc
Confidence 12236677665544443
No 122
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=8.4e-27 Score=175.90 Aligned_cols=257 Identities=14% Similarity=0.210 Sum_probs=199.0
Q ss_pred CCcccccceeeeecCCceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCC--EEEEEECCCcEEEEeCCC
Q 019847 12 YLMEDYYSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAK--TLAVGYMDSKLQLWDAET 89 (335)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~iw~~~~ 89 (335)
+..+...+++++.+...+++++.|.+|+|||++...... .+-.|.+.|+++.|.++-. .|++|+.||.|.+|+...
T Consensus 39 ~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~qlg--~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~ 116 (362)
T KOG0294|consen 39 FSAHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQLG--ILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGS 116 (362)
T ss_pred ccccccceeEEEecceeEeccCCCCcEEEEeccchhhhc--ceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCC
Confidence 455678899999999999999999999999998876433 4457899999999999765 899999999999999999
Q ss_pred ceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEE
Q 019847 90 SKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVR 169 (335)
Q Consensus 90 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 169 (335)
.+++..+++|...|+.++.+| .+++.++.+.|+.++.||+-.++.-......+. .+.+.|+|.|.+++.+..+ .|-
T Consensus 117 W~~~~slK~H~~~Vt~lsiHP-S~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~--at~v~w~~~Gd~F~v~~~~-~i~ 192 (362)
T KOG0294|consen 117 WELLKSLKAHKGQVTDLSIHP-SGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNK--ATLVSWSPQGDHFVVSGRN-KID 192 (362)
T ss_pred eEEeeeecccccccceeEecC-CCceEEEEcCCceeeeehhhcCccceeeccCCc--ceeeEEcCCCCEEEEEecc-EEE
Confidence 999999999999999999999 999999999999999999987765333322233 3449999999999998866 589
Q ss_pred EEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec-CCcEeEEEe--CCCCc
Q 019847 170 IWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA-KAQICGLEW--NRHHK 246 (335)
Q Consensus 170 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~--~~~~~ 246 (335)
+|.+..... +.... .+..+.++.|...+ .+++|+ .|+.|.+||.....+...+.. ...|..+.+ .|++.
T Consensus 193 i~q~d~A~v---~~~i~-~~~r~l~~~~l~~~--~L~vG~--d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~ 264 (362)
T KOG0294|consen 193 IYQLDNASV---FREIE-NPKRILCATFLDGS--ELLVGG--DNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHE 264 (362)
T ss_pred EEecccHhH---hhhhh-ccccceeeeecCCc--eEEEec--CCceEEEeccCCCccceeeecchhheeeeEEEecCCce
Confidence 999776332 22222 23457777776554 455554 899999999998888888765 457777763 45666
Q ss_pred eeeeeeeeeeecCCCeEEEEECCCC-----ceeecccCCCCceeEeEE
Q 019847 247 EILSGHGFSASGDGNKLCLWKYPNM-----TKVGELQSSNSRILDLSQ 289 (335)
Q Consensus 247 ~~~~~~~~~~~~~~~~i~i~d~~~~-----~~~~~~~~~~~~i~~~~~ 289 (335)
++++. +.||.|++||++.. +++..+.. ..+++|+..
T Consensus 265 ~lvTa------SSDG~I~vWd~~~~~k~~~~~l~e~n~-~~RltCl~~ 305 (362)
T KOG0294|consen 265 YLVTA------SSDGFIKVWDIDMETKKRPTLLAELNT-NVRLTCLRV 305 (362)
T ss_pred EEEEe------ccCceEEEEEccccccCCcceeEEeec-CCccceeee
Confidence 77666 78999999999765 33333332 344555543
No 123
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.5e-27 Score=180.49 Aligned_cols=270 Identities=15% Similarity=0.285 Sum_probs=220.5
Q ss_pred ceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEE
Q 019847 47 KVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSII 126 (335)
Q Consensus 47 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 126 (335)
+......+.+|.+.|..++-......+.+++.|.+.+||.+++++++..+.+|.+.|.+++|++ .+.++++++.|++-.
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~-s~~L~lTaSGD~taH 215 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHN-SGLLLLTASGDETAH 215 (481)
T ss_pred eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEecc-ccceEEEccCCcchH
Confidence 3334556789999999999988888899999999999999999999999999999999999999 999999999999999
Q ss_pred EEec------ccC---------------------------------CeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCe
Q 019847 127 NHDV------RVS---------------------------------NNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNV 167 (335)
Q Consensus 127 ~~d~------~~~---------------------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 167 (335)
||.. ... ..++..+.+|.+.|.+..|...|+.+++++.|.+
T Consensus 216 IW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRT 295 (481)
T KOG0300|consen 216 IWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRT 295 (481)
T ss_pred HHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeecccc
Confidence 9972 110 0234457789999999999999999999999999
Q ss_pred EEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCC-ceEEEeecC-CcEeEEEeCCCC
Q 019847 168 VRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKG-TCIHGIDAK-AQICGLEWNRHH 245 (335)
Q Consensus 168 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-~~~~~~~~~-~~~~~~~~~~~~ 245 (335)
..+||++++ ..+..+.+|....+.++-+|.. .|+++++ .|.+.++||++.. ..+..|+++ ..+++..|..+.
T Consensus 296 AnlwDVEtg---e~v~~LtGHd~ELtHcstHptQ-rLVvTsS--rDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd 369 (481)
T KOG0300|consen 296 ANLWDVETG---EVVNILTGHDSELTHCSTHPTQ-RLVVTSS--RDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD 369 (481)
T ss_pred ceeeeeccC---ceeccccCcchhccccccCCcc-eEEEEec--cCceeEeccchhhcceeeeecccccceeEEEEecCC
Confidence 999998874 5688889999999999999987 5777766 8999999999843 334556654 468888888776
Q ss_pred ceeeeeeeeeeecCCCeEEEEECCCCc-eeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCC----cc
Q 019847 246 KEILSGHGFSASGDGNKLCLWKYPNMT-KVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDED----SV 320 (335)
Q Consensus 246 ~~~~~~~~~~~~~~~~~i~i~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~----~~ 320 (335)
+ +++| ++|.+|++||+++.. ++.++. -.++++.++.+..+..++.-..+..|++||+.+...... ..
T Consensus 370 ~-vVSg------SDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRq 441 (481)
T KOG0300|consen 370 R-VVSG------SDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQ 441 (481)
T ss_pred c-eeec------CCCceEEEeeeccccCcceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCccccc
Confidence 5 3344 889999999998854 455554 356789999999999999988899999999998765443 34
Q ss_pred cccccccccee
Q 019847 321 SHLAGLVSLKT 331 (335)
Q Consensus 321 ~~~~~i~~~~~ 331 (335)
+|...|.+..+
T Consensus 442 gHrRMV~c~AW 452 (481)
T KOG0300|consen 442 GHRRMVTCCAW 452 (481)
T ss_pred ccceeeeeeec
Confidence 66666655544
No 124
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=9.6e-27 Score=198.21 Aligned_cols=272 Identities=14% Similarity=0.220 Sum_probs=215.4
Q ss_pred ceeeeecC--CceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeee
Q 019847 19 SKVIDWGR--NNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNL 96 (335)
Q Consensus 19 ~~~~~~~~--~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 96 (335)
.+.++|.+ +.+++++.|+.|++|+.....-.+. .+..+...|.+++- .+.+|++|+.+++|.+|.+..++.-..+
T Consensus 16 ~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~-ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~~~~iL 92 (933)
T KOG1274|consen 16 LTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPE-TIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGEEDTIL 92 (933)
T ss_pred eEEEEEcCCCCEEEEecCCCceEEeecCCcccCCc-hhhccCceeEEEee--cccceEEeeccceEEEeeCCCCCcccee
Confidence 44566665 5677888999999999766532221 12226777777776 5569999999999999999988776667
Q ss_pred cccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCC
Q 019847 97 EGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKM 176 (335)
Q Consensus 97 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 176 (335)
....-++++++|+. ++++++.|+.|-.|++.+...... ...+.+|.++|.++.|+|++++||+.+-||.|++||+.+.
T Consensus 93 ~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~-~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~ 170 (933)
T KOG1274|consen 93 ARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQ-EKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDG 170 (933)
T ss_pred eeeeccceEEEEec-CCcEEEeecCceeEEEEeccccch-heeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccc
Confidence 66778999999998 999999999999999999986655 6668899999999999999999999999999999999876
Q ss_pred CcccceeeccC----C-CCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec---CCcEeEEEeCCCCcee
Q 019847 177 SSSKSLHRFTD----H-CGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA---KAQICGLEWNRHHKEI 248 (335)
Q Consensus 177 ~~~~~~~~~~~----~-~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 248 (335)
.....+..... . ...+..++|+|++..+++.+ .|+.|++|+..+++....+.. ...+..++|+|.|+|+
T Consensus 171 ~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~---~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~Yi 247 (933)
T KOG1274|consen 171 ILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPP---VDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYI 247 (933)
T ss_pred hhhhhcccCCccccccccceeeeeeecCCCCeEEeec---cCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEE
Confidence 54333332221 1 34567899999988888877 599999999999988887764 3358999999999999
Q ss_pred eeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEE
Q 019847 249 LSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFW 308 (335)
Q Consensus 249 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw 308 (335)
+++ +.+|.|.|||+++.+. ......|++++|.|+..-+-.-...|...+|
T Consensus 248 AAs------~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 248 AAS------TLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred eee------ccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 988 6799999999988332 3334579999999998766555555555444
No 125
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.96 E-value=1.2e-27 Score=179.10 Aligned_cols=222 Identities=21% Similarity=0.350 Sum_probs=180.6
Q ss_pred CCCCCceEEEEcC-CCCEEEEEECCCcEEEEeCCCcee----------Ee-----eecccccceeEeeecCCCCCEEEEe
Q 019847 56 GEDDYPTSVSWSH-DAKTLAVGYMDSKLQLWDAETSKL----------VR-----NLEGHHRRVATSSWNHWNGHILTSG 119 (335)
Q Consensus 56 ~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~----------~~-----~~~~~~~~v~~~~~~~~~~~~l~~~ 119 (335)
.|.+.|+++...+ .|+|+++|+.||.|.+||++.... +. .-.+|.-.|.++.|-|.+..+|.++
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss 120 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS 120 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence 5889999999988 789999999999999999975431 11 1235778999999999999999999
Q ss_pred eCCCcEEEEecccCCeeeEEeecCCCCEEEEEeec---CCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEE
Q 019847 120 SKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSN---EGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALA 196 (335)
Q Consensus 120 ~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 196 (335)
+.|.++++||.++.+.... ...++.|.+-+++| ...++|+|..|-.|++.|+..+ ..-+.+.+|.+.|.++.
T Consensus 121 SFDhtlKVWDtnTlQ~a~~--F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG---s~sH~LsGHr~~vlaV~ 195 (397)
T KOG4283|consen 121 SFDHTLKVWDTNTLQEAVD--FKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG---SFSHTLSGHRDGVLAVE 195 (397)
T ss_pred cccceEEEeecccceeeEE--eecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCC---cceeeeccccCceEEEE
Confidence 9999999999987664332 24677889989988 3557888999999999998874 45788899999999999
Q ss_pred ecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCce---
Q 019847 197 WSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTK--- 273 (335)
Q Consensus 197 ~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~--- 273 (335)
|+|..++++++++ .||.|++||++.. .|..++.|..+++.
T Consensus 196 Wsp~~e~vLatgs--aDg~irlWDiRra-----------------------------------sgcf~~lD~hn~k~~p~ 238 (397)
T KOG4283|consen 196 WSPSSEWVLATGS--ADGAIRLWDIRRA-----------------------------------SGCFRVLDQHNTKRPPI 238 (397)
T ss_pred eccCceeEEEecC--CCceEEEEEeecc-----------------------------------cceeEEeecccCccCcc
Confidence 9999999999988 9999999999853 23344444433222
Q ss_pred eecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCc
Q 019847 274 VGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDEDS 319 (335)
Q Consensus 274 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~ 319 (335)
++.-.+|.+.+..++|+.++.++++.+.|..+++|+...+......
T Consensus 239 ~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~ 284 (397)
T KOG4283|consen 239 LKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLRE 284 (397)
T ss_pred ccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccc
Confidence 2234578999999999999999999999999999999988765543
No 126
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=4.3e-27 Score=177.60 Aligned_cols=278 Identities=13% Similarity=0.254 Sum_probs=215.6
Q ss_pred ceeeeecC-C-ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeee
Q 019847 19 SKVIDWGR-N-NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNL 96 (335)
Q Consensus 19 ~~~~~~~~-~-~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 96 (335)
..|+.|++ + .+++++.+|.|.|||+.+....+ .+.+|..+|.+++||++|+.|++++.|..|.+||+..|.+++.+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar--~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri 103 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIAR--MLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI 103 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhh--hhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE
Confidence 67888998 3 45556789999999999987644 45689999999999999999999999999999999999999888
Q ss_pred cccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecC-----CCCEEEEEeecCCCEEEEEeCCCeEEEE
Q 019847 97 EGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAH-----SGEVCGLKWSNEGNLLASGGDDNVVRIW 171 (335)
Q Consensus 97 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~dg~i~iw 171 (335)
. ...+|+...|+|.+.+..++.-.+..-.+-++.... ...+... .....+..|.+.|+++++|...|.+.++
T Consensus 104 r-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~--h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~ 180 (405)
T KOG1273|consen 104 R-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK--HSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVY 180 (405)
T ss_pred E-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCc--eeeccCCCccccccccccccccCCCCEEEEecCcceEEEE
Confidence 7 778999999999777777777777666666665322 2222111 1112334588899999999999999999
Q ss_pred EccCCCcccceeeccCCC-CCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCC-------ceE--EEee---cCCcEeE
Q 019847 172 ERSKMSSSKSLHRFTDHC-GGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKG-------TCI--HGID---AKAQICG 238 (335)
Q Consensus 172 d~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-------~~~--~~~~---~~~~~~~ 238 (335)
|..+. +.+..++-.. ..|..+.++..|..++.-+ .|+.||.|+++.- ++. +.+. ...+-.+
T Consensus 181 ~a~t~---e~vas~rits~~~IK~I~~s~~g~~liiNt---sDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ 254 (405)
T KOG1273|consen 181 DAETL---ECVASFRITSVQAIKQIIVSRKGRFLIINT---SDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKK 254 (405)
T ss_pred ecchh---eeeeeeeechheeeeEEEEeccCcEEEEec---CCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhh
Confidence 97764 4444444333 6788999999997776655 6999999998621 111 1111 1335678
Q ss_pred EEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCC-CceeEeEEcCCCCEEEEEeCCCcEEEEecCCC
Q 019847 239 LEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSN-SRILDLSQSPDGLTVATAGADETIRFWEAFGP 313 (335)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~ 313 (335)
++|+.+|.++.++. .....++||....|.+++.+.+.. ....++.|+|-...+++- ..|.+++|.....
T Consensus 255 ccfs~dgeYv~a~s-----~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 255 CCFSGDGEYVCAGS-----ARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQV 324 (405)
T ss_pred eeecCCccEEEecc-----ccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEeecc
Confidence 89999999998774 567889999999999999999877 567889999998888877 6799999987643
No 127
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.2e-26 Score=183.49 Aligned_cols=284 Identities=19% Similarity=0.258 Sum_probs=222.8
Q ss_pred cccccceeeeecCC--ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCC-EEEEEECCCcEEEEeCCCc
Q 019847 14 MEDYYSKVIDWGRN--NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAK-TLAVGYMDSKLQLWDAETS 90 (335)
Q Consensus 14 ~~~~~~~~~~~~~~--~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~ 90 (335)
+....++++.|++. -+++++.|+.+++|.++......+..+.-...+|.+.+|.|+|. .+++++....++.||+++.
T Consensus 211 ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~a 290 (514)
T KOG2055|consen 211 PSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETA 290 (514)
T ss_pred cCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccc
Confidence 45567999999995 58888999999999997654433333333467899999999999 8899999999999999987
Q ss_pred eeEee--ecccc-cceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCe
Q 019847 91 KLVRN--LEGHH-RRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNV 167 (335)
Q Consensus 91 ~~~~~--~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 167 (335)
+..+. ..++. ..+.....+| ++++|+..+..|.|.+....+++.+.. + .-.+.|..++|+.+++.|++++.+|.
T Consensus 291 k~~k~~~~~g~e~~~~e~FeVSh-d~~fia~~G~~G~I~lLhakT~eli~s-~-KieG~v~~~~fsSdsk~l~~~~~~Ge 367 (514)
T KOG2055|consen 291 KVTKLKPPYGVEEKSMERFEVSH-DSNFIAIAGNNGHIHLLHAKTKELITS-F-KIEGVVSDFTFSSDSKELLASGGTGE 367 (514)
T ss_pred ccccccCCCCcccchhheeEecC-CCCeEEEcccCceEEeehhhhhhhhhe-e-eeccEEeeEEEecCCcEEEEEcCCce
Confidence 65432 33333 4567778888 999999999999999999887665333 3 25678999999999999999999999
Q ss_pred EEEEEccCCCcccceeeccCCCCCe--eEEEecCCCCcEEEEecCCCCCeEEEEECCC------CceEEEee-cCCcEeE
Q 019847 168 VRIWERSKMSSSKSLHRFTDHCGGV--KALAWSPHQVNVLATGGGREDGCIKIWNVQK------GTCIHGID-AKAQICG 238 (335)
Q Consensus 168 i~iwd~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~------~~~~~~~~-~~~~~~~ 238 (335)
|.+||++.. ..++.+.. .+.| ++++.++++. ++++|+ ..|.|.|||..+ .+++..+. ....|++
T Consensus 368 V~v~nl~~~---~~~~rf~D-~G~v~gts~~~S~ng~-ylA~GS--~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Its 440 (514)
T KOG2055|consen 368 VYVWNLRQN---SCLHRFVD-DGSVHGTSLCISLNGS-YLATGS--DSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITS 440 (514)
T ss_pred EEEEecCCc---ceEEEEee-cCccceeeeeecCCCc-eEEecc--CcceEEEeccchhhccCCCCchhhhhhhheeeee
Confidence 999999875 44555543 2333 5677788885 777776 999999999654 23444443 2457999
Q ss_pred EEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCC---CceeEeEEcCCCCEEEEEeCCCcEEEEecC
Q 019847 239 LEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSN---SRILDLSQSPDGLTVATAGADETIRFWEAF 311 (335)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~ 311 (335)
++|+|+.+.++.+. ...+..+++-.+.+......++... +.|+|++|+|.+.+||.|..+|.+.+|.+.
T Consensus 441 l~Fn~d~qiLAiaS----~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 441 LQFNHDAQILAIAS----RVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eeeCcchhhhhhhh----hccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 99999999998663 3668899999998877776665443 468999999999999999999999999875
No 128
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.96 E-value=3.7e-25 Score=177.00 Aligned_cols=278 Identities=19% Similarity=0.313 Sum_probs=219.3
Q ss_pred cccceeeeecC--CceEEEecCCeEEEEEecCCceeeEEee-cC-CCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCce
Q 019847 16 DYYSKVIDWGR--NNVLAVALGPVLFLWKWENGKVKKLLQV-PG-EDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSK 91 (335)
Q Consensus 16 ~~~~~~~~~~~--~~~~~~~~~~~i~vw~~~~~~~~~~~~~-~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 91 (335)
+..+....|+| ..++.....+.+..|+++.+.+.+...+ +. ....|.|++|.++|+ +++|..+|.|.||+..+.+
T Consensus 200 ne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~ 278 (626)
T KOG2106|consen 200 NEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNR 278 (626)
T ss_pred cceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCce
Confidence 34456677887 4677778889999999998877554433 22 246799999999996 8899999999999999888
Q ss_pred eEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCC-------------------------------------
Q 019847 92 LVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSN------------------------------------- 134 (335)
Q Consensus 92 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~------------------------------------- 134 (335)
..+....|.+.|.+++... ++.+| +|+.|..|..||-.-.+
T Consensus 279 ~~k~~~aH~ggv~~L~~lr-~Gtll-SGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~ 356 (626)
T KOG2106|consen 279 ISKQVHAHDGGVFSLCMLR-DGTLL-SGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTL 356 (626)
T ss_pred EEeEeeecCCceEEEEEec-CccEe-ecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeee
Confidence 8888889999999999986 66655 49999999999832100
Q ss_pred --eeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCC
Q 019847 135 --NVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGRE 212 (335)
Q Consensus 135 --~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~ 212 (335)
.......+|......++.+|+.+.+++++.|+.+++|+-. +.... ..-..+..|+.|+|.| .++.|. .
T Consensus 357 ~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~-----k~~wt-~~~~d~~~~~~fhpsg--~va~Gt--~ 426 (626)
T KOG2106|consen 357 ENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDH-----KLEWT-KIIEDPAECADFHPSG--VVAVGT--A 426 (626)
T ss_pred cCCceEEEEecccceeeEEcCCChhheeeccCcceEEEccCC-----ceeEE-EEecCceeEeeccCcc--eEEEee--c
Confidence 0011234677888899999999999999999999999911 12221 1135678999999999 566655 8
Q ss_pred CCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCC-ceeeccc-CCCCceeEeEEc
Q 019847 213 DGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNM-TKVGELQ-SSNSRILDLSQS 290 (335)
Q Consensus 213 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~-~~~~~~~-~~~~~i~~~~~~ 290 (335)
.|...+.|.++...+.......+++.+.|+|+|.+++.| +.|+.|++|.+... ....... .+.++|+.+.||
T Consensus 427 ~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvg------s~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS 500 (626)
T KOG2106|consen 427 TGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVG------SHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWS 500 (626)
T ss_pred cceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEe------cCCCeEEEEEECCCCcEEEEeeeecCceeEEeeec
Confidence 999999999998777777778899999999999999998 78999999998653 3333332 344789999999
Q ss_pred CCCCEEEEEeCCCcEEEEecCC
Q 019847 291 PDGLTVATAGADETIRFWEAFG 312 (335)
Q Consensus 291 ~~~~~l~~~~~dg~v~iw~~~~ 312 (335)
+|+++|.+-+.|-.|..|....
T Consensus 501 ~Ds~~~~~~S~d~eiLyW~~~~ 522 (626)
T KOG2106|consen 501 SDSQFLVSNSGDYEILYWKPSE 522 (626)
T ss_pred CCCceEEeccCceEEEEEcccc
Confidence 9999999999999999994443
No 129
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=6.6e-29 Score=206.12 Aligned_cols=248 Identities=20% Similarity=0.403 Sum_probs=217.5
Q ss_pred cCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCC
Q 019847 34 LGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNG 113 (335)
Q Consensus 34 ~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 113 (335)
..-.+++|+.+ ++..|...+.++..-..++.+++|+.|..+.+|.+.....+..+.+|..+|.++.|++ ..
T Consensus 12 ~~t~Lr~~~~~--------~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~-~E 82 (825)
T KOG0267|consen 12 RATKLRVWDTR--------EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDT-SE 82 (825)
T ss_pred eeeccccccch--------hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCc-ch
Confidence 34456677643 2336888889998877889999999999999999988877888999999999999999 99
Q ss_pred CEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCee
Q 019847 114 HILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVK 193 (335)
Q Consensus 114 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~ 193 (335)
.+|++|+.+|+|++||++..+ ..+.+.+|...+.++.|+|-+.++|.|+.|+.+++||++. ..+.+.+.+|...+.
T Consensus 83 ~LlaagsasgtiK~wDleeAk-~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk---~Gc~~~~~s~~~vv~ 158 (825)
T KOG0267|consen 83 RLLAAGSASGTIKVWDLEEAK-IVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRK---KGCSHTYKSHTRVVD 158 (825)
T ss_pred hhhcccccCCceeeeehhhhh-hhhhhhccccCcceeeeccceEEeccccccccceehhhhc---cCceeeecCCcceeE
Confidence 999999999999999999555 4667889999999999999999999999999999999886 356788888999999
Q ss_pred EEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEee-cCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCc
Q 019847 194 ALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGID-AKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMT 272 (335)
Q Consensus 194 ~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~ 272 (335)
.+.|+|+|. +++.++ +|..+++||+..|+....|+ +...+..+.|+|..-.++.| +.|+.+++||+++.+
T Consensus 159 ~l~lsP~Gr-~v~~g~--ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~G------s~d~tv~f~dletfe 229 (825)
T KOG0267|consen 159 VLRLSPDGR-WVASGG--EDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPG------SSDRTVRFWDLETFE 229 (825)
T ss_pred EEeecCCCc-eeeccC--CcceeeeecccccccccccccccccccccccCchhhhhccC------CCCceeeeeccceeE
Confidence 999999995 666665 79999999999999999998 56789999999999888887 789999999999999
Q ss_pred eeecccCCCCceeEeEEcCCCCEEEEEeCCC
Q 019847 273 KVGELQSSNSRILDLSQSPDGLTVATAGADE 303 (335)
Q Consensus 273 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 303 (335)
.+.........|.+.+|+|++..+++|..+.
T Consensus 230 ~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 230 VISSGKPETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred EeeccCCccCCceeeeecCCceeeecCchhh
Confidence 9998888888999999999999988887653
No 130
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.96 E-value=6.1e-27 Score=186.90 Aligned_cols=262 Identities=17% Similarity=0.300 Sum_probs=212.7
Q ss_pred ceeeeecCCc-eEEEe--cCCeEEEEEecCC--ceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeE
Q 019847 19 SKVIDWGRNN-VLAVA--LGPVLFLWKWENG--KVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLV 93 (335)
Q Consensus 19 ~~~~~~~~~~-~~~~~--~~~~i~vw~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~ 93 (335)
+..+.|+... +++++ .|..+++|.-... +........+ +.-.|++......|+++|+..+.|+|||++...+.
T Consensus 37 ~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~g--d~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~h 114 (673)
T KOG4378|consen 37 DFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTG--DNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIH 114 (673)
T ss_pred ceeeeccccceEEEeecCCceeEEEecccCCCCccceeecccc--chHHHHhhhhcceeeeccCcCceeeehhhHHHHHh
Confidence 6789999865 44443 5778888874332 2222223232 24456666666789999999999999999977788
Q ss_pred eeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCC-CEEEEEeCCCeEEEEE
Q 019847 94 RNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEG-NLLASGGDDNVVRIWE 172 (335)
Q Consensus 94 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd 172 (335)
+.++.|...|+++.|+. .+.+|++++..|.|.+..+.++........+....|.-+.|+|.. .+|.+++.+|.|.+||
T Consensus 115 r~lkdh~stvt~v~YN~-~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwD 193 (673)
T KOG4378|consen 115 RFLKDHQSTVTYVDYNN-TDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWD 193 (673)
T ss_pred hhccCCcceeEEEEecC-CcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEe
Confidence 88999999999999998 889999999999999999987765333323334567789999954 4667789999999999
Q ss_pred ccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeee
Q 019847 173 RSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGH 252 (335)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (335)
+.... ....-...|..+...++|+|.++.|+++-+ .|..|.+||.+..+....+....+...++|.++|.+|++|
T Consensus 194 v~g~s--p~~~~~~~HsAP~~gicfspsne~l~vsVG--~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG- 268 (673)
T KOG4378|consen 194 VQGMS--PIFHASEAHSAPCRGICFSPSNEALLVSVG--YDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAG- 268 (673)
T ss_pred ccCCC--cccchhhhccCCcCcceecCCccceEEEec--ccceEEEeecccccccceeeecCCcceeeecCCceEEEee-
Confidence 88643 234455679999999999999999999987 9999999999998888888889999999999999999988
Q ss_pred eeeeecCCCeEEEEECCC-CceeecccCCCCceeEeEEcCCC
Q 019847 253 GFSASGDGNKLCLWKYPN-MTKVGELQSSNSRILDLSQSPDG 293 (335)
Q Consensus 253 ~~~~~~~~~~i~i~d~~~-~~~~~~~~~~~~~i~~~~~~~~~ 293 (335)
...|.|..||++. ..++..+..|...|++++|-|..
T Consensus 269 -----~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 269 -----NSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred -----cCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 6799999999986 56788889999999999998764
No 131
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=7.3e-27 Score=183.72 Aligned_cols=238 Identities=21% Similarity=0.354 Sum_probs=189.7
Q ss_pred ceEEEecCCeEEEEEecCC-ceeeEEe------------------ecCCCCCceEEEEcCC-CCEEEEEECCCcEEEEeC
Q 019847 28 NVLAVALGPVLFLWKWENG-KVKKLLQ------------------VPGEDDYPTSVSWSHD-AKTLAVGYMDSKLQLWDA 87 (335)
Q Consensus 28 ~~~~~~~~~~i~vw~~~~~-~~~~~~~------------------~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iw~~ 87 (335)
.++.++.+..|.|||++-. ...+.+. ..+|++.|..++|+.. .+.||+|+.|.+|++||+
T Consensus 194 yvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~ 273 (463)
T KOG0270|consen 194 YVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDV 273 (463)
T ss_pred eEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEc
Confidence 4555668999999998621 1112222 2379999999999874 568899999999999999
Q ss_pred CCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeec-CCCEEEEEeCCC
Q 019847 88 ETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSN-EGNLLASGGDDN 166 (335)
Q Consensus 88 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg 166 (335)
.++++...+..|.+.|.++.|+|..+..|++|+.|+++.+.|.+........+ ...+.|-.++|.| ....++++..||
T Consensus 274 ~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w-k~~g~VEkv~w~~~se~~f~~~tddG 352 (463)
T KOG0270|consen 274 DTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEW-KFDGEVEKVAWDPHSENSFFVSTDDG 352 (463)
T ss_pred CCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceE-EeccceEEEEecCCCceeEEEecCCc
Confidence 99999999999999999999999999999999999999999999544322322 3577899999999 566788889999
Q ss_pred eEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec---CCcEeEEEeCC
Q 019847 167 VVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA---KAQICGLEWNR 243 (335)
Q Consensus 167 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~---~~~~~~~~~~~ 243 (335)
+++-+|+|... +++.++..|.++|.++++++.-+.++++++ .|+.+++|++..........+ -+...|.++.|
T Consensus 353 ~v~~~D~R~~~--~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s--~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~ 428 (463)
T KOG0270|consen 353 TVYYFDIRNPG--KPVWTLKAHDDEISGLSVNIQTPGLLSTAS--TDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDP 428 (463)
T ss_pred eEEeeecCCCC--CceeEEEeccCCcceEEecCCCCcceeecc--ccceEEEEeecCCCCcccccccccccceeecccCC
Confidence 99999999864 778899999999999999999999999987 999999999876544222221 12367777888
Q ss_pred CCceeeeeeeeeeecCCCeEEEEECCCCceee
Q 019847 244 HHKEILSGHGFSASGDGNKLCLWKYPNMTKVG 275 (335)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~ 275 (335)
+-..+++ .++..+.+++||+.+...+.
T Consensus 429 ~~a~~la-----~GG~k~~~~vwd~~~~~~V~ 455 (463)
T KOG0270|consen 429 DVAFTLA-----FGGEKAVLRVWDIFTNSPVR 455 (463)
T ss_pred CcceEEE-----ecCccceEEEeecccChhHH
Confidence 7665533 34777899999998766543
No 132
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=2e-25 Score=184.33 Aligned_cols=281 Identities=16% Similarity=0.276 Sum_probs=219.4
Q ss_pred cceeeeecC--CceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEee
Q 019847 18 YSKVIDWGR--NNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRN 95 (335)
Q Consensus 18 ~~~~~~~~~--~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 95 (335)
.+.+++++. +.++++-.+|.|.+|++..+-.....-..+....|.+++|++ +..|++.+.+|.|.-||+.+++....
T Consensus 27 ~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~~~~ 105 (691)
T KOG2048|consen 27 EIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQKYN 105 (691)
T ss_pred ceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCceeEE
Confidence 467788876 344445589999999998865544333334567899999994 55688888999999999999999999
Q ss_pred ecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeE-EeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEcc
Q 019847 96 LEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTS-CIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERS 174 (335)
Q Consensus 96 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 174 (335)
+....+.|++++.+| .+..++.|+.||.+..++...+..... .+...++.+.+++|+|++..+++|+.||.|++||..
T Consensus 106 ~d~~gg~IWsiai~p-~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~ 184 (691)
T KOG2048|consen 106 IDSNGGAIWSIAINP-ENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVK 184 (691)
T ss_pred ecCCCcceeEEEeCC-ccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcC
Confidence 999999999999999 889999999999888887765543332 333456899999999999999999999999999988
Q ss_pred CCCccccee----ecc-CCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec-CCcEeEEEeCCCCcee
Q 019847 175 KMSSSKSLH----RFT-DHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA-KAQICGLEWNRHHKEI 248 (335)
Q Consensus 175 ~~~~~~~~~----~~~-~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 248 (335)
.+....... .+. +...-|.++.|-.++ .+++|. ..|+|.+||...+.+++.+.. ...+.+++..+++.++
T Consensus 185 ~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~--tI~sgD--S~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~v 260 (691)
T KOG2048|consen 185 SGQTLHIITMQLDRLSKREPTIVWSVLFLRDS--TIASGD--SAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRV 260 (691)
T ss_pred CCceEEEeeecccccccCCceEEEEEEEeecC--cEEEec--CCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeE
Confidence 765533111 111 123347788888766 555543 899999999999999988875 5689999999999998
Q ss_pred eeeeeeeeecCCCeEEEEECCCCce----eecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCC
Q 019847 249 LSGHGFSASGDGNKLCLWKYPNMTK----VGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFG 312 (335)
Q Consensus 249 ~~~~~~~~~~~~~~i~i~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~ 312 (335)
+++ +-|+.|..|...+... ......|...|.+++..++ .+++|+.|..+.+=....
T Consensus 261 fsa------Gvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 261 FSA------GVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSRE 320 (691)
T ss_pred EEc------cCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccc
Confidence 877 6799988888766533 2334567788999999888 899999999988876655
No 133
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.95 E-value=2e-26 Score=183.97 Aligned_cols=291 Identities=15% Similarity=0.203 Sum_probs=222.0
Q ss_pred ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEE--ECCCcEEEEeCCCc--eeEeeecccccce
Q 019847 28 NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVG--YMDSKLQLWDAETS--KLVRNLEGHHRRV 103 (335)
Q Consensus 28 ~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~dg~i~iw~~~~~--~~~~~~~~~~~~v 103 (335)
.+.+++.+..+++||+...+....+.-......+.++.|+.... |+++ +.|..|++|.-... +....-+.....-
T Consensus 4 Nl~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~ 82 (673)
T KOG4378|consen 4 NLHVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNA 82 (673)
T ss_pred ceeeeccCCceEEeecccccCccccccCCCCCcceeeeccccce-EEEeecCCceeEEEecccCCCCccceeeccccchH
Confidence 36777788899999998766544433222233488999987664 5444 46888999974322 1211111122244
Q ss_pred eEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCccccee
Q 019847 104 ATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLH 183 (335)
Q Consensus 104 ~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 183 (335)
.|++... ...++++|+..+.|++||++ .+.+.+.+.+|...|+++.++....+||+++..|.|.+..+.+......
T Consensus 83 ~Cv~~~s-~S~y~~sgG~~~~Vkiwdl~-~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~-- 158 (673)
T KOG4378|consen 83 FCVACAS-QSLYEISGGQSGCVKIWDLR-AKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTT-- 158 (673)
T ss_pred HHHhhhh-cceeeeccCcCceeeehhhH-HHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccc--
Confidence 4555544 55799999999999999999 6667888999999999999999999999999999999999887544333
Q ss_pred eccCC-CCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEee--cCCcEeEEEeCCCCceeeeeeeeeeecCC
Q 019847 184 RFTDH-CGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGID--AKAQICGLEWNRHHKEILSGHGFSASGDG 260 (335)
Q Consensus 184 ~~~~~-~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (335)
+... ...|.-+.++|..+.++.+++ .+|.|.+||.....++..+. +..+...++|+|....+++.. +-|
T Consensus 159 -f~~~sgqsvRll~ys~skr~lL~~as--d~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsV-----G~D 230 (673)
T KOG4378|consen 159 -FTIDSGQSVRLLRYSPSKRFLLSIAS--DKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSV-----GYD 230 (673)
T ss_pred -eecCCCCeEEEeecccccceeeEeec--cCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEe-----ccc
Confidence 3322 344668999999999999988 99999999999888776664 456889999999998886653 679
Q ss_pred CeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCC-CCccccccccccceec
Q 019847 261 NKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGD-EDSVSHLAGLVSLKTS 332 (335)
Q Consensus 261 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~-~~~~~~~~~i~~~~~~ 332 (335)
..|.+||.........+.. ..+.+.++|+++|.+|+.|+..|.|..||++..+.+ .....|...|.++.|.
T Consensus 231 kki~~yD~~s~~s~~~l~y-~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq 302 (673)
T KOG4378|consen 231 KKINIYDIRSQASTDRLTY-SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQ 302 (673)
T ss_pred ceEEEeecccccccceeee-cCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEee
Confidence 9999999987776665543 457899999999999999999999999999987654 4456888888888774
No 134
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.1e-25 Score=167.89 Aligned_cols=253 Identities=18% Similarity=0.346 Sum_probs=189.9
Q ss_pred cCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCC----ceeEeeecccccceeEeeecC-CCCCEEEEeeCCCcEEEEe
Q 019847 55 PGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAET----SKLVRNLEGHHRRVATSSWNH-WNGHILTSGSKDKSIINHD 129 (335)
Q Consensus 55 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~----~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~~~d 129 (335)
.+|.+-|.++.|.+.|+++|+|+.|++|+|||.+. ..+....+.|.+.|..+.|.+ .-|+.+++++.|+++.+|.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 47889999999999999999999999999999653 356677889999999999954 4689999999999999998
Q ss_pred cccCC--------eeeEEeecCCCCEEEEEeec--CCCEEEEEeCCCeEEEEEccCCCc---ccceeecc-------CCC
Q 019847 130 VRVSN--------NVTSCIKAHSGEVCGLKWSN--EGNLLASGGDDNVVRIWERSKMSS---SKSLHRFT-------DHC 189 (335)
Q Consensus 130 ~~~~~--------~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~-------~~~ 189 (335)
-.... .....+......|+.+.|.| -|-.||+++.||.+|||+.-.... ......+. .+.
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~ 169 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK 169 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence 63111 12344566778999999999 577999999999999998654322 11222222 356
Q ss_pred CCeeEEEecCCC--CcEEEEecCCCC-----CeEEEEECCCCc----eEEEee-cCCcEeEEEeCCCCceeeeeeeeeee
Q 019847 190 GGVKALAWSPHQ--VNVLATGGGRED-----GCIKIWNVQKGT----CIHGID-AKAQICGLEWNRHHKEILSGHGFSAS 257 (335)
Q Consensus 190 ~~v~~~~~~~~~--~~~~~~~~g~~d-----~~i~i~d~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (335)
.+..|+.|+|.. ..+++.|+ .+ +.++||....+. .+.++. +..+|..++|.|+-..-. ..++++
T Consensus 170 ~~~~CvsWn~sr~~~p~iAvgs--~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y--~~lAvA 245 (361)
T KOG2445|consen 170 QPCFCVSWNPSRMHEPLIAVGS--DEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSY--HLLAVA 245 (361)
T ss_pred CcceEEeeccccccCceEEEEc--ccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCce--eeEEEe
Confidence 678899999753 34777775 22 378888764432 223333 456899999999843211 113344
Q ss_pred cCCCeEEEEECCC--------------------CceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCC
Q 019847 258 GDGNKLCLWKYPN--------------------MTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFG 312 (335)
Q Consensus 258 ~~~~~i~i~d~~~--------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~ 312 (335)
+.|| |+||.++. -+.+..+..|.+.|..+.|+-.|..|++.|.||.||+|...-
T Consensus 246 ~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 246 TKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANY 319 (361)
T ss_pred ecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence 7788 99999873 123455778999999999999999999999999999998654
No 135
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.95 E-value=4.2e-25 Score=176.69 Aligned_cols=298 Identities=17% Similarity=0.275 Sum_probs=224.7
Q ss_pred ccccceeeeecC---CceEEEe---cCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCC
Q 019847 15 EDYYSKVIDWGR---NNVLAVA---LGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAE 88 (335)
Q Consensus 15 ~~~~~~~~~~~~---~~~~~~~---~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~ 88 (335)
.+--+.|++|++ +.++.+- .+..+.+||++.+..... ....++.|....|+|.+..++.....|.+..|+.+
T Consensus 153 f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~--vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~ 230 (626)
T KOG2106|consen 153 FDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGP--VKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLR 230 (626)
T ss_pred ccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCc--ceeccceEEEEEeccCCCcEEEEeCCceEEEEEcc
Confidence 345578888887 3455443 445789999987764332 23456778999999976666666668899999999
Q ss_pred CceeEee---ecc-cccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeC
Q 019847 89 TSKLVRN---LEG-HHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGD 164 (335)
Q Consensus 89 ~~~~~~~---~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 164 (335)
.+.+.+. ++. ...-|.|++|.+ +++ +++|..+|.|.+|+..+.+- .+....|.+.|.+++...+|.+|- |+.
T Consensus 231 ~~~l~k~~~~fek~ekk~Vl~v~F~e-ngd-viTgDS~G~i~Iw~~~~~~~-~k~~~aH~ggv~~L~~lr~GtllS-GgK 306 (626)
T KOG2106|consen 231 GGSLVKRQGIFEKREKKFVLCVTFLE-NGD-VITGDSGGNILIWSKGTNRI-SKQVHAHDGGVFSLCMLRDGTLLS-GGK 306 (626)
T ss_pred CCceEEEeeccccccceEEEEEEEcC-CCC-EEeecCCceEEEEeCCCceE-EeEeeecCCceEEEEEecCccEee-cCc
Confidence 8866554 332 236799999997 554 77999999999999975554 444449999999999999987555 999
Q ss_pred CCeEEEEEccCCCcccc--------------------------------------eeeccCCCCCeeEEEecCCCCcEEE
Q 019847 165 DNVVRIWERSKMSSSKS--------------------------------------LHRFTDHCGGVKALAWSPHQVNVLA 206 (335)
Q Consensus 165 dg~i~iwd~~~~~~~~~--------------------------------------~~~~~~~~~~v~~~~~~~~~~~~~~ 206 (335)
|..|..||-. ....+. .....+|......++.+|+...+++
T Consensus 307 DRki~~Wd~~-y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T 385 (626)
T KOG2106|consen 307 DRKIILWDDN-YRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLT 385 (626)
T ss_pred cceEEecccc-ccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheee
Confidence 9999999821 110000 0122457778889999999876666
Q ss_pred EecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeE
Q 019847 207 TGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILD 286 (335)
Q Consensus 207 ~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~ 286 (335)
++ .|+.+++|+ ..+++.+.....+..++.|+|.| .++.| ...|...+.|.++...+..-.. .++++.
T Consensus 386 ~g---qdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg-~va~G------t~~G~w~V~d~e~~~lv~~~~d-~~~ls~ 452 (626)
T KOG2106|consen 386 CG---QDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG-VVAVG------TATGRWFVLDTETQDLVTIHTD-NEQLSV 452 (626)
T ss_pred cc---CcceEEEcc--CCceeEEEEecCceeEeeccCcc-eEEEe------eccceEEEEecccceeEEEEec-CCceEE
Confidence 55 899999999 66777777788999999999999 77777 5689999999999666655555 889999
Q ss_pred eEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCcc--ccccccccceec
Q 019847 287 LSQSPDGLTVATAGADETIRFWEAFGPSGDEDSV--SHLAGLVSLKTS 332 (335)
Q Consensus 287 ~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~--~~~~~i~~~~~~ 332 (335)
++|+|+|.+||.|+.|+.|++|.++......... -+.+.|..|.++
T Consensus 453 v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS 500 (626)
T KOG2106|consen 453 VRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWS 500 (626)
T ss_pred EEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeec
Confidence 9999999999999999999999998876554332 223566666665
No 136
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=2.4e-26 Score=181.86 Aligned_cols=268 Identities=19% Similarity=0.259 Sum_probs=205.9
Q ss_pred ceEEEe-cCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEe
Q 019847 28 NVLAVA-LGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATS 106 (335)
Q Consensus 28 ~~~~~~-~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~ 106 (335)
.++++. ....+.+|.+....... ...--.++|.+++-+|+|.+|+.|+..|.|++|.+.+|+++..+..|-..|+++
T Consensus 52 yllsaq~~rp~l~vw~i~k~~~~~--q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL 129 (476)
T KOG0646|consen 52 YLLSAQLKRPLLHVWEILKKDQVV--QYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCL 129 (476)
T ss_pred heeeecccCccccccccCchhhhh--hhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEE
Confidence 444444 34478888876544322 111235679999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCEEEEeeCCCcEEEEeccc--------CCeeeEEeecCCCCEEEEEeecC--CCEEEEEeCCCeEEEEEccCC
Q 019847 107 SWNHWNGHILTSGSKDKSIINHDVRV--------SNNVTSCIKAHSGEVCGLKWSNE--GNLLASGGDDNVVRIWERSKM 176 (335)
Q Consensus 107 ~~~~~~~~~l~~~~~dg~i~~~d~~~--------~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~ 176 (335)
.|+. ++.+|++|+.||.|.+|.+.. ...+...+..|.-+|+++...+. ..++++++.|.++++||+..+
T Consensus 130 ~fs~-dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g 208 (476)
T KOG0646|consen 130 KFSD-DGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG 208 (476)
T ss_pred EEeC-CCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc
Confidence 9999 999999999999999998742 22356778899999999998764 468999999999999998875
Q ss_pred CcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCc----------------eEEEeec-C--CcEe
Q 019847 177 SSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGT----------------CIHGIDA-K--AQIC 237 (335)
Q Consensus 177 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~----------------~~~~~~~-~--~~~~ 237 (335)
. .+.++. ....+.+++.+|-+..++ +|+ .+|.|.+.++.+.. .+..+.+ . .+|+
T Consensus 209 ~---LLlti~-fp~si~av~lDpae~~~y-iGt--~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~IT 281 (476)
T KOG0646|consen 209 V---LLLTIT-FPSSIKAVALDPAERVVY-IGT--EEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAIT 281 (476)
T ss_pred e---eeEEEe-cCCcceeEEEcccccEEE-ecC--CcceEEeeehhcCCcccccccccccccccceeeeeccccCCccee
Confidence 3 344333 467799999999886544 444 89999998875432 1222222 2 3799
Q ss_pred EEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEE-EeCCCcEEEEecC
Q 019847 238 GLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVAT-AGADETIRFWEAF 311 (335)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~v~iw~~~ 311 (335)
|++.+-+|..+++| +.||.++|||+.+.++++++....++|+.+.+.|-.+-.+. -+....+-.|++.
T Consensus 282 cLais~DgtlLlSG------d~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~lk 350 (476)
T KOG0646|consen 282 CLAISTDGTLLLSG------DEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLERGIILFEHKQPSLPNPHLK 350 (476)
T ss_pred EEEEecCccEEEee------CCCCCEEEEecchHHHHHHHhhhccccceeEeeccccceecccccCccCCchHhh
Confidence 99999999999998 88999999999999999998877889999998664332222 2233344445444
No 137
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=5.7e-28 Score=200.65 Aligned_cols=228 Identities=25% Similarity=0.464 Sum_probs=196.1
Q ss_pred ccccceeeeecC--CceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCcee
Q 019847 15 EDYYSKVIDWGR--NNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKL 92 (335)
Q Consensus 15 ~~~~~~~~~~~~--~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 92 (335)
+...+.++..-. ..++.++.+..+.+|.+.... ....+.+|..+|.++.|++...+|++|+.+|+|++||++.++.
T Consensus 27 hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~--~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~ 104 (825)
T KOG0267|consen 27 HSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPN--AITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKI 104 (825)
T ss_pred hhhhhceeeeeccceeeccCCCceeeccccccCCc--hhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhh
Confidence 344444544322 345566678888899876544 4556789999999999999999999999999999999999999
Q ss_pred EeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEE
Q 019847 93 VRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWE 172 (335)
Q Consensus 93 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd 172 (335)
++.+.+|...+..+.|+| -+.+++.|+.|+.+++||++..++ ...+.+|...+..++|+|+|++++.+++|..+++||
T Consensus 105 vrtLtgh~~~~~sv~f~P-~~~~~a~gStdtd~~iwD~Rk~Gc-~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d 182 (825)
T KOG0267|consen 105 VRTLTGHLLNITSVDFHP-YGEFFASGSTDTDLKIWDIRKKGC-SHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWD 182 (825)
T ss_pred hhhhhccccCcceeeecc-ceEEeccccccccceehhhhccCc-eeeecCCcceeEEEeecCCCceeeccCCcceeeeec
Confidence 999999999999999999 999999999999999999996554 666778999999999999999999999999999999
Q ss_pred ccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec-CCcEeEEEeCCCCceeeee
Q 019847 173 RSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA-KAQICGLEWNRHHKEILSG 251 (335)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 251 (335)
+.. ++.+..|..|.+.+..+.|+|.. .+++.|+ .|+++++||+++.+.+...+. ...+.+..|+|+++.+++|
T Consensus 183 ~~a---gk~~~ef~~~e~~v~sle~hp~e-~Lla~Gs--~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G 256 (825)
T KOG0267|consen 183 LTA---GKLSKEFKSHEGKVQSLEFHPLE-VLLAPGS--SDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSG 256 (825)
T ss_pred ccc---cccccccccccccccccccCchh-hhhccCC--CCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecC
Confidence 765 56688889999999999999986 6888877 999999999999888877665 4579999999999999887
Q ss_pred e
Q 019847 252 H 252 (335)
Q Consensus 252 ~ 252 (335)
.
T Consensus 257 ~ 257 (825)
T KOG0267|consen 257 E 257 (825)
T ss_pred c
Confidence 3
No 138
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.7e-25 Score=175.02 Aligned_cols=251 Identities=27% Similarity=0.468 Sum_probs=193.6
Q ss_pred CCceEEEEcC-------CCCEEEEEECCCcEEEEeCCCcee---------------------EeeecccccceeEeeecC
Q 019847 59 DYPTSVSWSH-------DAKTLAVGYMDSKLQLWDAETSKL---------------------VRNLEGHHRRVATSSWNH 110 (335)
Q Consensus 59 ~~v~~~~~~~-------~~~~l~~~~~dg~i~iw~~~~~~~---------------------~~~~~~~~~~v~~~~~~~ 110 (335)
....|++|.. .|+|+|.|+.|..|.|||+.-... -..-.+|+..|.++.|+.
T Consensus 174 afPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~ 253 (463)
T KOG0270|consen 174 AFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNR 253 (463)
T ss_pred CcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcc
Confidence 3446777743 368999999999999999752110 011236888999999998
Q ss_pred CCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeec-CCCEEEEEeCCCeEEEEEccCCCcccceeeccCCC
Q 019847 111 WNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSN-EGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHC 189 (335)
Q Consensus 111 ~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 189 (335)
...+.|++|+.|.+|++||+.++++ ...+..|.+.|.++.|+| ...+|++|+.|++|.+.|.|........-. -.
T Consensus 254 ~~~nVLaSgsaD~TV~lWD~~~g~p-~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk---~~ 329 (463)
T KOG0270|consen 254 NFRNVLASGSADKTVKLWDVDTGKP-KSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK---FD 329 (463)
T ss_pred ccceeEEecCCCceEEEEEcCCCCc-ceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE---ec
Confidence 7889999999999999999997775 666778999999999999 678999999999999999996433322222 35
Q ss_pred CCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCC-ceEEEeec-CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEE
Q 019847 190 GGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKG-TCIHGIDA-KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWK 267 (335)
Q Consensus 190 ~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d 267 (335)
+.|-.++|.|.....+.++. .||+++-+|+|+. +++.++.. ..+|.++++++....+++. ++.++.+++|+
T Consensus 330 g~VEkv~w~~~se~~f~~~t--ddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t-----~s~d~~Vklw~ 402 (463)
T KOG0270|consen 330 GEVEKVAWDPHSENSFFVST--DDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLST-----ASTDKVVKLWK 402 (463)
T ss_pred cceEEEEecCCCceeEEEec--CCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceee-----ccccceEEEEe
Confidence 67999999999988888876 9999999999986 88888875 4689999999988776543 47899999999
Q ss_pred CCCCce--eecccCCCCceeEeEEcCCC-CEEEEEeCCCcEEEEecCCCCCCCCcc
Q 019847 268 YPNMTK--VGELQSSNSRILDLSQSPDG-LTVATAGADETIRFWEAFGPSGDEDSV 320 (335)
Q Consensus 268 ~~~~~~--~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~v~iw~~~~~~~~~~~~ 320 (335)
+..-.+ +..-.-..+...|+++.|+- -.|+.|+..+.+++||+.......+.+
T Consensus 403 ~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~kaF 458 (463)
T KOG0270|consen 403 FDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVRKAF 458 (463)
T ss_pred ecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhHHHhh
Confidence 865443 22211122346677788875 456778888889999999876655443
No 139
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.95 E-value=5.4e-24 Score=174.34 Aligned_cols=258 Identities=12% Similarity=0.123 Sum_probs=188.1
Q ss_pred ceeeeecCC--ceEE-EecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEE-ECCCcEEEEeCCCceeEe
Q 019847 19 SKVIDWGRN--NVLA-VALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVG-YMDSKLQLWDAETSKLVR 94 (335)
Q Consensus 19 ~~~~~~~~~--~~~~-~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iw~~~~~~~~~ 94 (335)
+..++|+++ .+++ ++.++.|++||..+++....+ ..+. .+..++|+|+++.++++ ..++.+++||+.+++.+.
T Consensus 33 ~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~--~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~ 109 (300)
T TIGR03866 33 PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTL--PSGP-DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLA 109 (300)
T ss_pred CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEec--cCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEe
Confidence 456888875 3433 456789999999988765433 3333 35678999999987665 468999999999988777
Q ss_pred eecccccceeEeeecCCCCCEEEEeeCCC-cEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEE-eCCCeEEEEE
Q 019847 95 NLEGHHRRVATSSWNHWNGHILTSGSKDK-SIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASG-GDDNVVRIWE 172 (335)
Q Consensus 95 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~iwd 172 (335)
.+.. ...+..++|+| ++..++++..++ .+.+||.++........ .......++|+|++++|+++ ..++.|++||
T Consensus 110 ~~~~-~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d 185 (300)
T TIGR03866 110 EIPV-GVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNVL--VDQRPRFAEFTADGKELWVSSEIGGTVSVID 185 (300)
T ss_pred EeeC-CCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEEE--cCCCccEEEECCCCCEEEEEcCCCCEEEEEE
Confidence 7653 34568899999 999999888775 46778987654433222 23345789999999988655 4689999999
Q ss_pred ccCCCcccceeec--cCC--CCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCcee
Q 019847 173 RSKMSSSKSLHRF--TDH--CGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEI 248 (335)
Q Consensus 173 ~~~~~~~~~~~~~--~~~--~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (335)
+++......+... ..+ ......++|+|+++.++++.+ .++.+.+||+++++.+..+.....+.++.|+|+++++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~--~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l 263 (300)
T TIGR03866 186 VATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALG--PANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYL 263 (300)
T ss_pred cCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcC--CCCeEEEEECCCCcEEEEEEeCCCcceEEECCCCCEE
Confidence 8875432222110 001 112346889999987666554 5678999999999888777667789999999999998
Q ss_pred eeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcC
Q 019847 249 LSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSP 291 (335)
Q Consensus 249 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~ 291 (335)
+++. ..++.|++||+.+++.+..++.. ...+.++++|
T Consensus 264 ~~~~-----~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 264 LTTN-----GVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred EEEc-----CCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 7652 45899999999999999888754 4458888765
No 140
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=8.3e-26 Score=187.03 Aligned_cols=239 Identities=20% Similarity=0.375 Sum_probs=200.8
Q ss_pred EEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEe--eecccccceeE-eeecCCCCCEEEEeeCCCcEEE
Q 019847 51 LLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVR--NLEGHHRRVAT-SSWNHWNGHILTSGSKDKSIIN 127 (335)
Q Consensus 51 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~--~~~~~~~~v~~-~~~~~~~~~~l~~~~~dg~i~~ 127 (335)
...+.+|...|..++..+.. .+++++.||++++|+-...+.+. .+.+|.+-|.. ++|.+.++..+++|+.|..|.+
T Consensus 7 s~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v 85 (745)
T KOG0301|consen 7 SHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIV 85 (745)
T ss_pred EEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEE
Confidence 34567999999999877554 78999999999999976555443 46667777776 8887756778999999999999
Q ss_pred EecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEE
Q 019847 128 HDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLAT 207 (335)
Q Consensus 128 ~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 207 (335)
|...... +...+.+|+..|.+++...++. +++||.|.++++|-+.. ....+.+|+..|.++..-|++ .+++
T Consensus 86 ~~~~~~~-P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~-----l~~~l~gH~asVWAv~~l~e~--~~vT 156 (745)
T KOG0301|consen 86 FKLSQAE-PLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGE-----LVYSLQGHTASVWAVASLPEN--TYVT 156 (745)
T ss_pred EecCCCC-chhhhhccccceeeeecCCcCc-eEecccccceEEecchh-----hhcccCCcchheeeeeecCCC--cEEe
Confidence 9998555 4777899999999999888877 99999999999998654 345588999999999999987 5555
Q ss_pred ecCCCCCeEEEEECCCCceEEEeecCC-cEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeE
Q 019847 208 GGGREDGCIKIWNVQKGTCIHGIDAKA-QICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILD 286 (335)
Q Consensus 208 ~~g~~d~~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~ 286 (335)
|+ .|.+|++|.- ++.++++..|. -+..+++-+++.++-+ +.||.|+.|++ +++.+.++.+|+.-|.+
T Consensus 157 gs--aDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flSc-------sNDg~Ir~w~~-~ge~l~~~~ghtn~vYs 224 (745)
T KOG0301|consen 157 GS--ADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSC-------SNDGSIRLWDL-DGEVLLEMHGHTNFVYS 224 (745)
T ss_pred cc--CcceeeeccC--CchhhhhccchhheeeeEEecCCCeEee-------cCCceEEEEec-cCceeeeeeccceEEEE
Confidence 55 8999999975 77888888765 5888988888765533 67999999998 88999999999999999
Q ss_pred eEEcCCCCEEEEEeCCCcEEEEecC
Q 019847 287 LSQSPDGLTVATAGADETIRFWEAF 311 (335)
Q Consensus 287 ~~~~~~~~~l~~~~~dg~v~iw~~~ 311 (335)
++...++..++++++|++++||+..
T Consensus 225 is~~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 225 ISMALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred EEecCCCCeEEEecCCceEEEeecC
Confidence 9988888899999999999999988
No 141
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.95 E-value=1.3e-25 Score=170.37 Aligned_cols=284 Identities=20% Similarity=0.296 Sum_probs=209.3
Q ss_pred ccceeeeecC------CceEEEecCCeEEEEEecCCc---eeeEEeecCCCCCceEEEEcCC----CCEEEEEECCCcEE
Q 019847 17 YYSKVIDWGR------NNVLAVALGPVLFLWKWENGK---VKKLLQVPGEDDYPTSVSWSHD----AKTLAVGYMDSKLQ 83 (335)
Q Consensus 17 ~~~~~~~~~~------~~~~~~~~~~~i~vw~~~~~~---~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~dg~i~ 83 (335)
..+..++|+. ..+++..+.+.+.+|+....- ..+...-+.|....+.++|+-+ ..++|+|+.-|.|+
T Consensus 39 ~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIr 118 (385)
T KOG1034|consen 39 KPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIR 118 (385)
T ss_pred CccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEE
Confidence 3444455552 367777788899999976543 2233333457788888999764 45889999999999
Q ss_pred EEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeE--EeecCCCCEEEEEeecCCCEEEE
Q 019847 84 LWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTS--CIKAHSGEVCGLKWSNEGNLLAS 161 (335)
Q Consensus 84 iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~ 161 (335)
|.|+.+++....+.+|...|..+.+.|.+.+++++++.|..|++|++++...+.. -..+|...|.++.|++++.++++
T Consensus 119 Vid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~S 198 (385)
T KOG1034|consen 119 VIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIAS 198 (385)
T ss_pred EEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeec
Confidence 9999999999999999999999999998899999999999999999997765432 24579999999999999999999
Q ss_pred EeCCCeEEEEEccCCCcccce-------------------------eeccCCCCCeeEEEecCCCCcEEEEecCCCCCeE
Q 019847 162 GGDDNVVRIWERSKMSSSKSL-------------------------HRFTDHCGGVKALAWSPHQVNVLATGGGREDGCI 216 (335)
Q Consensus 162 ~~~dg~i~iwd~~~~~~~~~~-------------------------~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i 216 (335)
++.|.++++|++...+-...+ .+-.-|...|-|+.|-- ..++.-+ -++.|
T Consensus 199 cGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g--d~ilSks---cenaI 273 (385)
T KOG1034|consen 199 CGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG--DFILSKS---CENAI 273 (385)
T ss_pred cCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHh--hheeecc---cCceE
Confidence 999999999998732211100 01123666677777764 3444444 57899
Q ss_pred EEEEC-CCCceEEEe-------------ecC-CcE--eEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceee--cc
Q 019847 217 KIWNV-QKGTCIHGI-------------DAK-AQI--CGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVG--EL 277 (335)
Q Consensus 217 ~i~d~-~~~~~~~~~-------------~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~--~~ 277 (335)
..|.. +-.+.+... +-+ ..+ ...+|+|.++.++.| ...|.+.+||++..++.. ++
T Consensus 274 ~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~g------nq~g~v~vwdL~~~ep~~~ttl 347 (385)
T KOG1034|consen 274 VCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALG------NQSGKVYVWDLDNNEPPKCTTL 347 (385)
T ss_pred EEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhc------cCCCcEEEEECCCCCCccCceE
Confidence 99987 222221111 111 122 335677888888887 679999999999877632 12
Q ss_pred c--CCCCceeEeEEcCCCCEEEEEeCCCcEEEEecC
Q 019847 278 Q--SSNSRILDLSQSPDGLTVATAGADETIRFWEAF 311 (335)
Q Consensus 278 ~--~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~ 311 (335)
. .....|...+|+.|+.+|+....|+.|--||.-
T Consensus 348 ~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 348 THSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 1 123468999999999999999999999988853
No 142
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.9e-25 Score=170.32 Aligned_cols=275 Identities=16% Similarity=0.259 Sum_probs=198.9
Q ss_pred ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcC--CCCEEEEEECCCcEEEEeCCCceeEeee--cccc-cc
Q 019847 28 NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSH--DAKTLAVGYMDSKLQLWDAETSKLVRNL--EGHH-RR 102 (335)
Q Consensus 28 ~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~--~~~~-~~ 102 (335)
.++++.+.|.|++||..+++.... +.++...++.++|.. ....+.+++.||+|++||++.......+ ..+. .+
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~--fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~ 119 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEE--FKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTP 119 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhhe--ecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCc
Confidence 466667899999999999887554 457788888899977 4667899999999999999876554443 3444 45
Q ss_pred eeEeeecCCCCCEEEEee----CCCcEEEEecccCCe-eeEEeecCCCCEEEEEeec-CCCEEEEEeCCCeEEEEEccCC
Q 019847 103 VATSSWNHWNGHILTSGS----KDKSIINHDVRVSNN-VTSCIKAHSGEVCGLKWSN-EGNLLASGGDDNVVRIWERSKM 176 (335)
Q Consensus 103 v~~~~~~~~~~~~l~~~~----~dg~i~~~d~~~~~~-~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~ 176 (335)
..+++-.. +++++++|. .+-.+.+||++..++ +......|...|++++|+| +.++|++|+.||.|.+||++..
T Consensus 120 f~~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 120 FICLDLNC-KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred ceEeeccC-cCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence 66666665 677888875 456899999998877 4455667999999999999 7789999999999999999877
Q ss_pred CcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCC-------------cEeEEEeCC
Q 019847 177 SSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKA-------------QICGLEWNR 243 (335)
Q Consensus 177 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~-------------~~~~~~~~~ 243 (335)
.....+.....+...|.++.|..++-.-+.+-+ ......+|+++.+.+...++.+. .+... .+|
T Consensus 199 ~EeDaL~~viN~~sSI~~igw~~~~ykrI~clT--H~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~-~~~ 275 (376)
T KOG1188|consen 199 NEEDALLHVINHGSSIHLIGWLSKKYKRIMCLT--HMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINE-HSP 275 (376)
T ss_pred cchhhHHHhhcccceeeeeeeecCCcceEEEEE--ccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeec-ccC
Confidence 655556555668888999999988732233333 79999999999988665554321 11111 122
Q ss_pred CC-ceeeeeeeeeeecCCCeEEEEEC---CC---CceeecccC-CCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCC
Q 019847 244 HH-KEILSGHGFSASGDGNKLCLWKY---PN---MTKVGELQS-SNSRILDLSQSPDGLTVATAGADETIRFWEAFGP 313 (335)
Q Consensus 244 ~~-~~~~~~~~~~~~~~~~~i~i~d~---~~---~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~ 313 (335)
.+ ...+.+ ++.-+...++-+ .+ .+.+..+++ |..-|+++.|...+.++.||++||.+.+|.....
T Consensus 276 ~~~~~~~l~-----g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~da 348 (376)
T KOG1188|consen 276 GDKDTCALA-----GTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVEDA 348 (376)
T ss_pred CCcceEEEe-----ccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecCCc
Confidence 22 222222 232444444433 22 344555665 6667889999988999999999999999996443
No 143
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.94 E-value=4.5e-26 Score=182.30 Aligned_cols=240 Identities=19% Similarity=0.296 Sum_probs=202.6
Q ss_pred CcccccceeeeecC--CceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCc
Q 019847 13 LMEDYYSKVIDWGR--NNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETS 90 (335)
Q Consensus 13 ~~~~~~~~~~~~~~--~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 90 (335)
+..+-++.++...+ ..+++++.-.++.|||+......-..++....-..++++.+||.+..+++..||.|.|||+.+.
T Consensus 462 l~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq 541 (705)
T KOG0639|consen 462 LNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ 541 (705)
T ss_pred cCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc
Confidence 33455566655555 4688888889999999987665444444444556788999999999999999999999999999
Q ss_pred eeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEE
Q 019847 91 KLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRI 170 (335)
Q Consensus 91 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 170 (335)
..++.|++|.+.+.|+..++ ++..|.+|+-|++|+-||++++.++.+ ..+.+.|.++..+|++.++++|-+++.+.+
T Consensus 542 ~~VrqfqGhtDGascIdis~-dGtklWTGGlDntvRcWDlregrqlqq--hdF~SQIfSLg~cP~~dWlavGMens~vev 618 (705)
T KOG0639|consen 542 TLVRQFQGHTDGASCIDISK-DGTKLWTGGLDNTVRCWDLREGRQLQQ--HDFSSQIFSLGYCPTGDWLAVGMENSNVEV 618 (705)
T ss_pred eeeecccCCCCCceeEEecC-CCceeecCCCccceeehhhhhhhhhhh--hhhhhhheecccCCCccceeeecccCcEEE
Confidence 99999999999999999999 999999999999999999998776443 235678999999999999999999999999
Q ss_pred EEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeee
Q 019847 171 WERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILS 250 (335)
Q Consensus 171 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (335)
......+ ...+..|.+-|.++.|.+.|++++.+| .|+.+..|...-|..+...+....|.++.++.+.+++++
T Consensus 619 lh~skp~----kyqlhlheScVLSlKFa~cGkwfvStG---kDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVT 691 (705)
T KOG0639|consen 619 LHTSKPE----KYQLHLHESCVLSLKFAYCGKWFVSTG---KDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVT 691 (705)
T ss_pred EecCCcc----ceeecccccEEEEEEecccCceeeecC---chhhhhhccCccccceeeccccCcceeeeeccCceEEEe
Confidence 8866533 334455889999999999998877777 799999999999999998888999999999999999999
Q ss_pred eeeeeeecCCCeEEEEEC
Q 019847 251 GHGFSASGDGNKLCLWKY 268 (335)
Q Consensus 251 ~~~~~~~~~~~~i~i~d~ 268 (335)
| +.|..-.+|.+
T Consensus 692 G------SGdkkATVYeV 703 (705)
T KOG0639|consen 692 G------SGDKKATVYEV 703 (705)
T ss_pred c------CCCcceEEEEE
Confidence 8 55777777764
No 144
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.94 E-value=2.2e-25 Score=172.11 Aligned_cols=210 Identities=25% Similarity=0.433 Sum_probs=171.2
Q ss_pred ccccceeEeeecCC-CCCEEEEeeCCCcEEEEecccC---------------CeeeEEeecCCCCEEEEEeec-CCCEEE
Q 019847 98 GHHRRVATSSWNHW-NGHILTSGSKDKSIINHDVRVS---------------NNVTSCIKAHSGEVCGLKWSN-EGNLLA 160 (335)
Q Consensus 98 ~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~---------------~~~~~~~~~~~~~i~~~~~~~-~~~~l~ 160 (335)
.|.+.+..+.-.+. +..+.++=+..|.|+||++... ...+..+.+|...=..++||| ....|+
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll 228 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL 228 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence 46677777776663 3455566678899999998531 223555778888889999999 334588
Q ss_pred EEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCC---ceEEEeecCCcEe
Q 019847 161 SGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKG---TCIHGIDAKAQIC 237 (335)
Q Consensus 161 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~---~~~~~~~~~~~~~ 237 (335)
+|.--+.|++|...++.-..-...+.+|+..|..++|+|....++++|+ -||+|+|||++.+ .++..-.++..|+
T Consensus 229 sGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS--~DgsIrIWDiRs~~~~~~~~~kAh~sDVN 306 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCS--CDGSIRIWDIRSGPKKAAVSTKAHNSDVN 306 (440)
T ss_pred cCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeee--cCceEEEEEecCCCccceeEeeccCCcee
Confidence 8888889999998875433344567789999999999999999999998 9999999999988 4555655677999
Q ss_pred EEEeCCCCceeeeeeeeeeecCCCeEEEEECCC---CceeecccCCCCceeEeEEcCC-CCEEEEEeCCCcEEEEecCCC
Q 019847 238 GLEWNRHHKEILSGHGFSASGDGNKLCLWKYPN---MTKVGELQSSNSRILDLSQSPD-GLTVATAGADETIRFWEAFGP 313 (335)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~---~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~v~iw~~~~~ 313 (335)
.+.|+....+|++| ++||.++|||+++ ++++.+++.|..+|+++.|+|. ...|++++.|..|.+||+.-.
T Consensus 307 VISWnr~~~lLasG------~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE 380 (440)
T KOG0302|consen 307 VISWNRREPLLASG------GDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVE 380 (440)
T ss_pred eEEccCCcceeeec------CCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeecc
Confidence 99999999988877 8999999999976 6788999999999999999996 467888899999999999876
Q ss_pred CC
Q 019847 314 SG 315 (335)
Q Consensus 314 ~~ 315 (335)
+.
T Consensus 381 ~D 382 (440)
T KOG0302|consen 381 AD 382 (440)
T ss_pred CC
Confidence 54
No 145
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=6e-24 Score=175.68 Aligned_cols=244 Identities=22% Similarity=0.373 Sum_probs=196.7
Q ss_pred CCCceEEEEcCCCCEEEEEECCCcEEEEeCCCcee-Eeeecc-cccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCe
Q 019847 58 DDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKL-VRNLEG-HHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNN 135 (335)
Q Consensus 58 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~ 135 (335)
..+|.++||+.+.+.||.+-.+|.|.+|++..+=. ...+.+ ....|.+++|+ ++..|++.+.+|.|.-||+.+.++
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~--e~~RLFS~g~sg~i~EwDl~~lk~ 102 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA--EGGRLFSSGLSGSITEWDLHTLKQ 102 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc--cCCeEEeecCCceEEEEecccCce
Confidence 56799999999999999999999999999987532 233443 45689999998 577888999999999999997776
Q ss_pred eeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCe
Q 019847 136 VTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGC 215 (335)
Q Consensus 136 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~ 215 (335)
........+.|++++.+|.+..++.|+.||.+..++.... .......+...++.+.++.|+|++..++. | +.||.
T Consensus 103 -~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~-~I~~~r~l~rq~sRvLslsw~~~~~~i~~-G--s~Dg~ 177 (691)
T KOG2048|consen 103 -KYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPD-KITYKRSLMRQKSRVLSLSWNPTGTKIAG-G--SIDGV 177 (691)
T ss_pred -eEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCc-eEEEEeecccccceEEEEEecCCccEEEe-c--ccCce
Confidence 4446677899999999999999999999997777776542 22223344455789999999999965554 4 48999
Q ss_pred EEEEECCCCceEEEeec-----C----CcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeE
Q 019847 216 IKIWNVQKGTCIHGIDA-----K----AQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILD 286 (335)
Q Consensus 216 i~i~d~~~~~~~~~~~~-----~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~ 286 (335)
|++||..++..+..... . .-+.++.+-.++ .+++| ...|.|.+||...+.+++.+..|.+.|.+
T Consensus 178 Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sg------DS~G~V~FWd~~~gTLiqS~~~h~adVl~ 250 (691)
T KOG2048|consen 178 IRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASG------DSAGTVTFWDSIFGTLIQSHSCHDADVLA 250 (691)
T ss_pred EEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEe------cCCceEEEEcccCcchhhhhhhhhcceeE
Confidence 99999999988773322 1 135666666444 34444 67899999999999999999999999999
Q ss_pred eEEcCCCCEEEEEeCCCcEEEEecCCCCC
Q 019847 287 LSQSPDGLTVATAGADETIRFWEAFGPSG 315 (335)
Q Consensus 287 ~~~~~~~~~l~~~~~dg~v~iw~~~~~~~ 315 (335)
++..+++.++++++.|+.|.-|...+.+.
T Consensus 251 Lav~~~~d~vfsaGvd~~ii~~~~~~~~~ 279 (691)
T KOG2048|consen 251 LAVADNEDRVFSAGVDPKIIQYSLTTNKS 279 (691)
T ss_pred EEEcCCCCeEEEccCCCceEEEEecCCcc
Confidence 99999999999999999999998887754
No 146
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.94 E-value=3e-24 Score=181.40 Aligned_cols=278 Identities=20% Similarity=0.306 Sum_probs=204.8
Q ss_pred ccceeeeecC--CceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCE-EEEEECCCcEEEEeCCCceeE
Q 019847 17 YYSKVIDWGR--NNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKT-LAVGYMDSKLQLWDAETSKLV 93 (335)
Q Consensus 17 ~~~~~~~~~~--~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~iw~~~~~~~~ 93 (335)
..++++.-+| +-++.+..+|+|.++|++.++.+..++. ..+.|+.++|.-||+. +|+|+..|.+.+||++..+..
T Consensus 203 s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~--d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~ 280 (910)
T KOG1539|consen 203 SRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQ--DWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLI 280 (910)
T ss_pred cceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEc--cccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeee
Confidence 4577787777 4455566899999999999997655542 2589999999999875 566777899999999876544
Q ss_pred eeec-ccccceeEeeecCCCCCEEEEeeCCCcEEE---------------------------------------------
Q 019847 94 RNLE-GHHRRVATSSWNHWNGHILTSGSKDKSIIN--------------------------------------------- 127 (335)
Q Consensus 94 ~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~--------------------------------------------- 127 (335)
..+. .|.+.+....|.| ....+++++.|+.+++
T Consensus 281 ~v~~nah~~sv~~~~fl~-~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~ 359 (910)
T KOG1539|consen 281 NVTRNAHYGSVTGATFLP-GEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTL 359 (910)
T ss_pred eeeeccccCCcccceecC-CCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcch
Confidence 4333 3334444444443 3333333333333332
Q ss_pred --------------------------------------------------------------------------------
Q 019847 128 -------------------------------------------------------------------------------- 127 (335)
Q Consensus 128 -------------------------------------------------------------------------------- 127 (335)
T Consensus 360 r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L 439 (910)
T KOG1539|consen 360 RSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVL 439 (910)
T ss_pred hhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEe
Confidence
Q ss_pred -----------------------------------EecccCCeeeEEe---ecCCCCEEEEEeecCCCEEEEEeCCCeEE
Q 019847 128 -----------------------------------HDVRVSNNVTSCI---KAHSGEVCGLKWSNEGNLLASGGDDNVVR 169 (335)
Q Consensus 128 -----------------------------------~d~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 169 (335)
|++..+-. ...+ ..|.++|+.++...-++.+++++.+|.++
T Consensus 440 ~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~-r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilk 518 (910)
T KOG1539|consen 440 DPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIH-RKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILK 518 (910)
T ss_pred cCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCee-ecccccCccccCceeEEEecCCCceEEEccCcceEE
Confidence 22221111 1222 46899999999998889999999999999
Q ss_pred EEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEee-cCCcEeEEEeCCCCcee
Q 019847 170 IWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGID-AKAQICGLEWNRHHKEI 248 (335)
Q Consensus 170 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 248 (335)
+||..+.. .+..+. -..++.++..+.... +++.+. .|-.|+++|..+.+.++.+. +.+.+++++|||+|+++
T Consensus 519 fw~f~~k~---l~~~l~-l~~~~~~iv~hr~s~-l~a~~~--ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWl 591 (910)
T KOG1539|consen 519 FWDFKKKV---LKKSLR-LGSSITGIVYHRVSD-LLAIAL--DDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWL 591 (910)
T ss_pred EEecCCcc---eeeeec-cCCCcceeeeeehhh-hhhhhc--CceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEE
Confidence 99987643 233332 345677888887775 444444 79999999999999999998 46789999999999999
Q ss_pred eeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCC-CcEEEEecCC
Q 019847 249 LSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGAD-ETIRFWEAFG 312 (335)
Q Consensus 249 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~v~iw~~~~ 312 (335)
++. +.|++|++||+.++.++-.+.- ..+++++.|+|+|.+|||...| .-|++|.-..
T Consensus 592 isa------smD~tIr~wDlpt~~lID~~~v-d~~~~sls~SPngD~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 592 ISA------SMDSTIRTWDLPTGTLIDGLLV-DSPCTSLSFSPNGDFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred EEe------ecCCcEEEEeccCcceeeeEec-CCcceeeEECCCCCEEEEEEecCceEEEEEchh
Confidence 988 7799999999999999877643 4578999999999999999988 6699996443
No 147
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.94 E-value=5.7e-25 Score=173.80 Aligned_cols=254 Identities=16% Similarity=0.176 Sum_probs=199.9
Q ss_pred CCCCCceEEEEcCCC--CEEEEEECCCcEEEEeCCCc----eeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEe
Q 019847 56 GEDDYPTSVSWSHDA--KTLAVGYMDSKLQLWDAETS----KLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHD 129 (335)
Q Consensus 56 ~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iw~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d 129 (335)
-+...|++++|+|.. +++|+|..-|.|-+||+.+. .-+..+..|..+|.++.|+|.+...+++.+.||+|+.-|
T Consensus 184 v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D 263 (498)
T KOG4328|consen 184 VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQD 263 (498)
T ss_pred ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeee
Confidence 467899999999954 58889999999999999533 335567889999999999999999999999999999999
Q ss_pred cccCCe-eeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEe
Q 019847 130 VRVSNN-VTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATG 208 (335)
Q Consensus 130 ~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 208 (335)
++.... .+..+......+..+.|+.+...++.+..=|...+||++.... ....+.-|...|..++++|-.+++++++
T Consensus 264 ~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s--~~~~~~lh~kKI~sv~~NP~~p~~laT~ 341 (498)
T KOG4328|consen 264 FEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGS--EYENLRLHKKKITSVALNPVCPWFLATA 341 (498)
T ss_pred ecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCc--cchhhhhhhcccceeecCCCCchheeec
Confidence 975432 1111222445677888988888888888778999999998643 3445556888999999999999999999
Q ss_pred cCCCCCeEEEEECCCCc-----eEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECC----CCceeecccC
Q 019847 209 GGREDGCIKIWNVQKGT-----CIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYP----NMTKVGELQS 279 (335)
Q Consensus 209 ~g~~d~~i~i~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~----~~~~~~~~~~ 279 (335)
+ .|++.+|||++.-. .+..+++...|.+..|||.+..+++. +.|..|+|||.. ...+..++..
T Consensus 342 s--~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT------~~D~~IRv~dss~~sa~~~p~~~I~H 413 (498)
T KOG4328|consen 342 S--LDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTT------CQDNEIRVFDSSCISAKDEPLGTIPH 413 (498)
T ss_pred c--cCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEee------ccCCceEEeecccccccCCccceeec
Confidence 8 99999999998632 25667778899999999999888776 679999999983 3444444431
Q ss_pred ---CCCc--eeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCc
Q 019847 280 ---SNSR--ILDLSQSPDGLTVATAGADETIRFWEAFGPSGDEDS 319 (335)
Q Consensus 280 ---~~~~--i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~ 319 (335)
+... .....|.|+..++++|-.-..|-|+|-..++...+.
T Consensus 414 n~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el 458 (498)
T KOG4328|consen 414 NNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCEL 458 (498)
T ss_pred cCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeec
Confidence 1112 345689999999999998888999998888755443
No 148
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=1.2e-24 Score=177.42 Aligned_cols=245 Identities=16% Similarity=0.273 Sum_probs=196.7
Q ss_pred EEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEec
Q 019847 51 LLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDV 130 (335)
Q Consensus 51 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~ 130 (335)
.+.+.+|++.|.++...|.|.+|++|+.||+|+||.+.+|++++.+. ..+.|.+++|+|....-+++......+.+.+.
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp 471 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIVNP 471 (733)
T ss_pred eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEEeCc
Confidence 34567999999999999999999999999999999999999999987 56799999999954444444444444444443
Q ss_pred ccC------------------------------------CeeeEEeecCCCCEEEEEeecCCCEEEEEeCC---CeEEEE
Q 019847 131 RVS------------------------------------NNVTSCIKAHSGEVCGLKWSNEGNLLASGGDD---NVVRIW 171 (335)
Q Consensus 131 ~~~------------------------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~iw 171 (335)
.-+ ..-+.....|...|..+.|+..|.||++...+ ..|.|+
T Consensus 472 ~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliH 551 (733)
T KOG0650|consen 472 IFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIH 551 (733)
T ss_pred cccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEE
Confidence 111 00112334588899999999999999998654 478999
Q ss_pred EccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecC-CcEeEEEeCCCCceeee
Q 019847 172 ERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAK-AQICGLEWNRHHKEILS 250 (335)
Q Consensus 172 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 250 (335)
++..... ...|....+.|.++.|+|...+++++. ...|++||+..++.++.+... ..+..++.+|.|..++.
T Consensus 552 QLSK~~s---Q~PF~kskG~vq~v~FHPs~p~lfVaT----q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~ 624 (733)
T KOG0650|consen 552 QLSKRKS---QSPFRKSKGLVQRVKFHPSKPYLFVAT----QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLIL 624 (733)
T ss_pred ecccccc---cCchhhcCCceeEEEecCCCceEEEEe----ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEE
Confidence 9876443 334444567799999999998888874 789999999988877776554 46889999999999998
Q ss_pred eeeeeeecCCCeEEEEECCCC-ceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEe
Q 019847 251 GHGFSASGDGNKLCLWKYPNM-TKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWE 309 (335)
Q Consensus 251 ~~~~~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~ 309 (335)
| +.|+.+..||+.-. ++.+++..|...+++++|++.-.++++|+.||.+.|+-
T Consensus 625 g------s~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 625 G------SYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFH 678 (733)
T ss_pred e------cCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEe
Confidence 8 67999999999754 67788899999999999999999999999999999884
No 149
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.3e-25 Score=195.78 Aligned_cols=270 Identities=21% Similarity=0.398 Sum_probs=207.5
Q ss_pred CCeEEEEEecC--Cc--eeeEEeecCCCCCceEEEEcCCCCE----EEEEECCCcEEEEeCCCc------eeEeeecccc
Q 019847 35 GPVLFLWKWEN--GK--VKKLLQVPGEDDYPTSVSWSHDAKT----LAVGYMDSKLQLWDAETS------KLVRNLEGHH 100 (335)
Q Consensus 35 ~~~i~vw~~~~--~~--~~~~~~~~~~~~~v~~~~~~~~~~~----l~~~~~dg~i~iw~~~~~------~~~~~~~~~~ 100 (335)
+.++.+|.++. .+ ++..-.+ .-....+.++|.+.+.. ||.|..||.|.+||...- ..+.....|+
T Consensus 38 ~~slEifeld~~~~~~dlk~~~s~-~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~ 116 (1049)
T KOG0307|consen 38 SASLEIFELDFSDESSDLKPVGSL-QSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHT 116 (1049)
T ss_pred ccccceeeecccCccccccccccc-cccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccC
Confidence 44566666543 22 1222222 23456789999997765 888889999999997652 3455677899
Q ss_pred cceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEE-eecCCCCEEEEEeec-CCCEEEEEeCCCeEEEEEccCCCc
Q 019847 101 RRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSC-IKAHSGEVCGLKWSN-EGNLLASGGDDNVVRIWERSKMSS 178 (335)
Q Consensus 101 ~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~ 178 (335)
+.|..+.|++..+++|++|+.||.|.|||+...+..... -....+.|.+++|+. ..+.|++++.+|.+.|||++..
T Consensus 117 G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~-- 194 (1049)
T KOG0307|consen 117 GPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKK-- 194 (1049)
T ss_pred CceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCC--
Confidence 999999999988889999999999999999875544333 223567899999998 4678899999999999999974
Q ss_pred ccceeeccCCC--CCeeEEEecCCCCcEEEEecC-CCCCeEEEEECCCC-ceEEEeecC-CcEeEEEeCCCCc-eeeeee
Q 019847 179 SKSLHRFTDHC--GGVKALAWSPHQVNVLATGGG-REDGCIKIWNVQKG-TCIHGIDAK-AQICGLEWNRHHK-EILSGH 252 (335)
Q Consensus 179 ~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~g-~~d~~i~i~d~~~~-~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~ 252 (335)
+++..+..+. ..+..+.|+|++..-++++++ ...-.|.+||+|.. .+++.+++| ..+.++.|++.+. +++++
T Consensus 195 -~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSs- 272 (1049)
T KOG0307|consen 195 -KPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSS- 272 (1049)
T ss_pred -CcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcc-
Confidence 3344444343 347789999998776666652 12347999999864 456666554 5799999999994 44544
Q ss_pred eeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCC-EEEEEeCCCcEEEEecCCCC
Q 019847 253 GFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGL-TVATAGADETIRFWEAFGPS 314 (335)
Q Consensus 253 ~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~v~iw~~~~~~ 314 (335)
+.|+.|.+|+.++++.+..+......+..+.|+|... .++.++-||.|.||.+.+..
T Consensus 273 -----gkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 273 -----GKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred -----cCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 8899999999999999999999888999999999765 78888999999999998765
No 150
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=3.2e-25 Score=179.60 Aligned_cols=262 Identities=15% Similarity=0.200 Sum_probs=203.9
Q ss_pred EEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCC--------ceeEeeecccccceeEeeecCCCCCEEEEeeCC
Q 019847 51 LLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAET--------SKLVRNLEGHHRRVATSSWNHWNGHILTSGSKD 122 (335)
Q Consensus 51 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 122 (335)
.+++..|.+.|+.++|.|....|++++.||.|.+|+++. -+++.+|.+|.++|.|+++.+ ++..+++|+.|
T Consensus 287 k~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~-n~~~~ysgg~D 365 (577)
T KOG0642|consen 287 KFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPS-NGEHCYSGGID 365 (577)
T ss_pred eeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecC-CceEEEeeccC
Confidence 345667899999999999999999999999999999932 256788999999999999998 99999999999
Q ss_pred CcEEEEecccC---------CeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCee
Q 019847 123 KSIINHDVRVS---------NNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVK 193 (335)
Q Consensus 123 g~i~~~d~~~~---------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~ 193 (335)
|+|+.|++... ..+...+.+|.+.++.+++++....|++++.||+++.|+...... .........+...
T Consensus 366 g~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~--~~f~~~~e~g~Pl 443 (577)
T KOG0642|consen 366 GTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP--CTFGEPKEHGYPL 443 (577)
T ss_pred ceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc--cccCCccccCCcc
Confidence 99999966522 134566889999999999999888999999999999999765432 1111111223345
Q ss_pred EEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec--------CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEE
Q 019847 194 ALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA--------KAQICGLEWNRHHKEILSGHGFSASGDGNKLCL 265 (335)
Q Consensus 194 ~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i 265 (335)
++.+-.....+..+.. .-+.-.++++.....+..+.. ...+..+.++|.+...+++ .+++.|++
T Consensus 444 svd~~ss~~a~~~~s~--~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~------hed~~Ir~ 515 (577)
T KOG0642|consen 444 SVDRTSSRPAHSLASF--RFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTA------HEDRSIRF 515 (577)
T ss_pred eEeeccchhHhhhhhc--ccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEec------ccCCceec
Confidence 6666554433333221 334444455555554444432 1357778889998887776 67999999
Q ss_pred EECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCccccc
Q 019847 266 WKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDEDSVSHL 323 (335)
Q Consensus 266 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~ 323 (335)
+|..++.++.....|...++++++.|+|.+|++++.||.+++|++..+........|.
T Consensus 516 ~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 516 FDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHR 573 (577)
T ss_pred ccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeecccccc
Confidence 9999999999999999999999999999999999999999999998887766655544
No 151
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=7.5e-24 Score=167.72 Aligned_cols=261 Identities=16% Similarity=0.265 Sum_probs=205.4
Q ss_pred CCCceEEEEcCCCCEEEEEECCCcEEEEeCCC--ceeEeeecccccceeEeeecCCCCC-EEEEeeCCCcEEEEecccCC
Q 019847 58 DDYPTSVSWSHDAKTLAVGYMDSKLQLWDAET--SKLVRNLEGHHRRVATSSWNHWNGH-ILTSGSKDKSIINHDVRVSN 134 (335)
Q Consensus 58 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~ 134 (335)
.+.|+++.|+|....|++++.||.++||.+.. ...++.+.-...+|.+..|.| +|. .+++++....++.||+.+.+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p-~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAP-NGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecC-CCceEEEecccceEEEEeeccccc
Confidence 46799999999999999999999999998863 445666666778999999999 776 99999999999999998655
Q ss_pred ee-eEEeecCC-CCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCC
Q 019847 135 NV-TSCIKAHS-GEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGRE 212 (335)
Q Consensus 135 ~~-~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~ 212 (335)
.. +....+++ ..+.....+|++++|+..+..|.|.+....+. ..+..++ -.+.|..++|+.+++.++++++
T Consensus 292 ~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~---eli~s~K-ieG~v~~~~fsSdsk~l~~~~~--- 364 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTK---ELITSFK-IEGVVSDFTFSSDSKELLASGG--- 364 (514)
T ss_pred cccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhh---hhhheee-eccEEeeEEEecCCcEEEEEcC---
Confidence 32 22223333 45778889999999999999999999986654 3344443 4678999999999998888884
Q ss_pred CCeEEEEECCCCceEEEeecCCc--EeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCC------CceeecccCCCCce
Q 019847 213 DGCIKIWNVQKGTCIHGIDAKAQ--ICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPN------MTKVGELQSSNSRI 284 (335)
Q Consensus 213 d~~i~i~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~------~~~~~~~~~~~~~i 284 (335)
+|.|.+||++...+++.+...+. -++++.++++.++++| ++.|.|.|||..+ .+++..+..-...|
T Consensus 365 ~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~G------S~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~I 438 (514)
T KOG2055|consen 365 TGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATG------SDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAI 438 (514)
T ss_pred CceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEec------cCcceEEEeccchhhccCCCCchhhhhhhheee
Confidence 99999999999999999877664 4567888999999988 8899999999653 56777777777889
Q ss_pred eEeEEcCCCCEEEEEeC--CCcEEEEecCCCCCCCC---ccccccccccceec
Q 019847 285 LDLSQSPDGLTVATAGA--DETIRFWEAFGPSGDED---SVSHLAGLVSLKTS 332 (335)
Q Consensus 285 ~~~~~~~~~~~l~~~~~--dg~v~iw~~~~~~~~~~---~~~~~~~i~~~~~~ 332 (335)
++++|++|.++||.+|. +..+++-.+.+...-.. .-.....+.++.||
T Consensus 439 tsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFS 491 (514)
T KOG2055|consen 439 TSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFS 491 (514)
T ss_pred eeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEec
Confidence 99999999999988874 56788776655322111 12334445555554
No 152
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.93 E-value=4.8e-24 Score=176.47 Aligned_cols=276 Identities=19% Similarity=0.320 Sum_probs=213.1
Q ss_pred cceeeeecCC-ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeee
Q 019847 18 YSKVIDWGRN-NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNL 96 (335)
Q Consensus 18 ~~~~~~~~~~-~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 96 (335)
.+.-++|.|+ .-+..+.+..+.+||.+.|... .++.+|.+.|+|++|+.||+.+|+|+.|..|.+|+-+-...+ .+
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~ll--qtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L-kY 90 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLL--QPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL-KY 90 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCcccc--cccccccceEEEEEEccCCceeccCCCceeEEEeccccccee-ee
Confidence 4566788874 4444556778999999999864 466799999999999999999999999999999985533322 22
Q ss_pred cccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCC
Q 019847 97 EGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKM 176 (335)
Q Consensus 97 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 176 (335)
.|.+.|.|+.|+| -...|++++-+ ..-+|......... ......+.+.+|..||++|+.|-.+|+|.+-+-. +
T Consensus 91 -SH~D~IQCMsFNP-~~h~LasCsLs-dFglWS~~qK~V~K---~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-g 163 (1081)
T KOG1538|consen 91 -SHNDAIQCMSFNP-ITHQLASCSLS-DFGLWSPEQKSVSK---HKSSSRIICCSWTNDGQYLALGMFNGTISIRNKN-G 163 (1081)
T ss_pred -ccCCeeeEeecCc-hHHHhhhcchh-hccccChhhhhHHh---hhhheeEEEeeecCCCcEEEEeccCceEEeecCC-C
Confidence 4899999999999 88888887753 45678765332211 1234568899999999999999999999998644 3
Q ss_pred CcccceeeccCCCCCeeEEEecCCCC----cEEEEecCCCCCeEEEEECCCCceEE-EeecCCcEeEEEeCCCCceeeee
Q 019847 177 SSSKSLHRFTDHCGGVKALAWSPHQV----NVLATGGGREDGCIKIWNVQKGTCIH-GIDAKAQICGLEWNRHHKEILSG 251 (335)
Q Consensus 177 ~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~~~~~g~~d~~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 251 (335)
+....+....+.+++|.+++|+|... .+++... ...++.++.+. |+.+. .-..+-...|+.+.++|.+++.|
T Consensus 164 Eek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~D--W~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiG 240 (1081)
T KOG1538|consen 164 EEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVAD--WGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLG 240 (1081)
T ss_pred CcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEe--ccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEc
Confidence 34445666667889999999999743 2444443 56677777765 44433 23334567899999999999988
Q ss_pred eeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCC
Q 019847 252 HGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGP 313 (335)
Q Consensus 252 ~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~ 313 (335)
+.|+.+++|- +.|-.+.++......|..++..|++++++.|+.||+|-.|++...
T Consensus 241 ------Gsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fS 295 (1081)
T KOG1538|consen 241 ------GSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFS 295 (1081)
T ss_pred ------cCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHHh
Confidence 7799999997 567777888778889999999999999999999999999987643
No 153
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.93 E-value=1.3e-23 Score=174.24 Aligned_cols=291 Identities=21% Similarity=0.306 Sum_probs=217.4
Q ss_pred ecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCC---EEEEEECCCcEEEEeCCCce------------------
Q 019847 33 ALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAK---TLAVGYMDSKLQLWDAETSK------------------ 91 (335)
Q Consensus 33 ~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~~~~dg~i~iw~~~~~~------------------ 91 (335)
+.+..|.++.-..++......+.||.+.|.+++|...+. +||++++|..||||.+.-+.
T Consensus 166 gs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~ 245 (764)
T KOG1063|consen 166 GSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLP 245 (764)
T ss_pred CcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCc
Confidence 356678888877788888899999999999999987544 88999999999999863221
Q ss_pred ---eE----------eeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeee----E--EeecCCCCEEEEEe
Q 019847 92 ---LV----------RNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVT----S--CIKAHSGEVCGLKW 152 (335)
Q Consensus 92 ---~~----------~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~----~--~~~~~~~~i~~~~~ 152 (335)
.. ..+.+|.+.|.++.|+| .+..|++++.|.++.+|...+...+- + ...+.........|
T Consensus 246 ~f~~l~~i~~~is~eall~GHeDWV~sv~W~p-~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw 324 (764)
T KOG1063|consen 246 VFMILEEIQYRISFEALLMGHEDWVYSVWWHP-EGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLW 324 (764)
T ss_pred eeeeeeeEEEEEehhhhhcCcccceEEEEEcc-chhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEE
Confidence 11 11348999999999999 88899999999999999987552211 1 11223345788999
Q ss_pred ecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEE------------
Q 019847 153 SNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWN------------ 220 (335)
Q Consensus 153 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d------------ 220 (335)
+|+++.+++-+.-|..++|...+...........+|.+.|..++|+|.|+++++++ .|.+-|+|-
T Consensus 325 ~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs---~DQTTRlFa~wg~q~~wHEia 401 (764)
T KOG1063|consen 325 SPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVS---LDQTTRLFARWGRQQEWHEIA 401 (764)
T ss_pred cCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEec---cccceeeecccccccceeeec
Confidence 99999999999999999999555555566677789999999999999999888776 455555542
Q ss_pred ----------------------------------CCC-------------------------------------------
Q 019847 221 ----------------------------------VQK------------------------------------------- 223 (335)
Q Consensus 221 ----------------------------------~~~------------------------------------------- 223 (335)
...
T Consensus 402 RPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~ 481 (764)
T KOG1063|consen 402 RPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNT 481 (764)
T ss_pred ccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCccccccc
Confidence 110
Q ss_pred Cce----EE-----------------------------Ee-ecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECC
Q 019847 224 GTC----IH-----------------------------GI-DAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYP 269 (335)
Q Consensus 224 ~~~----~~-----------------------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~ 269 (335)
|.. .. .+ -+...+.+++.+|+++.+++++. ...-+.-.|++|+..
T Consensus 482 G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCK-S~~~ehAvI~lw~t~ 560 (764)
T KOG1063|consen 482 GGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACK-SSLKEHAVIRLWNTA 560 (764)
T ss_pred ccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhh-hCCccceEEEEEecc
Confidence 000 00 00 01235788899999998887642 112234679999999
Q ss_pred CCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCC----cccccccccc
Q 019847 270 NMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDED----SVSHLAGLVS 328 (335)
Q Consensus 270 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~----~~~~~~~i~~ 328 (335)
+....+.+..|.-.|+.++|||||++|++.+.|.++.+|+......... ...|..-|..
T Consensus 561 ~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWd 623 (764)
T KOG1063|consen 561 NWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWD 623 (764)
T ss_pred chhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEE
Confidence 9999999999999999999999999999999999999999865433221 3455554443
No 154
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.93 E-value=3e-23 Score=172.06 Aligned_cols=294 Identities=20% Similarity=0.319 Sum_probs=228.1
Q ss_pred CCcccccceeeeecCC--ceEEEecCCeEEEEEecCC--ceeeEEee---cCCCCCceEEEEcCCCCEEEEEECCCcEEE
Q 019847 12 YLMEDYYSKVIDWGRN--NVLAVALGPVLFLWKWENG--KVKKLLQV---PGEDDYPTSVSWSHDAKTLAVGYMDSKLQL 84 (335)
Q Consensus 12 ~~~~~~~~~~~~~~~~--~~~~~~~~~~i~vw~~~~~--~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 84 (335)
...++-.+.++.|++. .+++++.|+++.+|..++. -.....++ .+.........|+|+++.+++-+..|..++
T Consensus 263 l~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hl 342 (764)
T KOG1063|consen 263 LMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHL 342 (764)
T ss_pred hcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEE
Confidence 3456778999999995 5899999999999997654 33334443 233445788999999999999999999999
Q ss_pred EeCCCc---eeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCe---eeEEeecCCCCEEEEEeecCCCE
Q 019847 85 WDAETS---KLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNN---VTSCIKAHSGEVCGLKWSNEGNL 158 (335)
Q Consensus 85 w~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~ 158 (335)
|..+.. .....+.+|.+.|..++|.| .+.+|++.+.|.+-++|-.-..+. .+...+-|.-.++|+++-+....
T Consensus 343 Wkt~d~~~w~~~~~iSGH~~~V~dv~W~p-sGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~ 421 (764)
T KOG1063|consen 343 WKTKDKTFWTQEPVISGHVDGVKDVDWDP-SGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQ 421 (764)
T ss_pred EeccCccceeeccccccccccceeeeecC-CCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCce
Confidence 983321 33445678999999999999 999999999999999987652211 12234458888999999887778
Q ss_pred EEEEeCCCeEEEEEccC-------------------------------------------CC------------------
Q 019847 159 LASGGDDNVVRIWERSK-------------------------------------------MS------------------ 177 (335)
Q Consensus 159 l~~~~~dg~i~iwd~~~-------------------------------------------~~------------------ 177 (335)
+++|..+..+|+|+... +.
T Consensus 422 FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ 501 (764)
T KOG1063|consen 422 FVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELT 501 (764)
T ss_pred eeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhcc
Confidence 99999999999997311 00
Q ss_pred ------------cccceeeccCCCCCeeEEEecCCCCcEEEEecCC---CCCeEEEEECCCCceEEEeecCC-cEeEEEe
Q 019847 178 ------------SSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGR---EDGCIKIWNVQKGTCIHGIDAKA-QICGLEW 241 (335)
Q Consensus 178 ------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~---~d~~i~i~d~~~~~~~~~~~~~~-~~~~~~~ 241 (335)
....++.+.+|...|.+++.+|+++ ++++++-+ +...|++|+..+...+..+..|. .|+.++|
T Consensus 502 ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gn-liASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~F 580 (764)
T KOG1063|consen 502 EPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGN-LIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAF 580 (764)
T ss_pred CCChHHHHHHhccchhhHHhccCceeEEEEEecCCCC-EEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEE
Confidence 0001233457888999999999995 66665411 22469999999988888777665 7999999
Q ss_pred CCCCceeeeeeeeeeecCCCeEEEEECCCCce----eecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCC
Q 019847 242 NRHHKEILSGHGFSASGDGNKLCLWKYPNMTK----VGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGP 313 (335)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~ 313 (335)
+|++++|++. +.|.++.+|....... ....+.|..-|.+..|+|++.+++|+|.|.+|++|.....
T Consensus 581 Spdg~~LLsv------sRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 581 SPDGRYLLSV------SRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred CCCCcEEEEe------ecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 9999999987 7799999998754322 3346789999999999999999999999999999999887
No 155
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=8.7e-24 Score=159.85 Aligned_cols=248 Identities=17% Similarity=0.231 Sum_probs=184.6
Q ss_pred ceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEe
Q 019847 61 PTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCI 140 (335)
Q Consensus 61 v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~ 140 (335)
-.|+.|++.|.+||+|+.||.|.|||+.|...-+.+.+|-.+|++++|++ +++.|++++.|..|.+||+..+..+.+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~-dgr~LltsS~D~si~lwDl~~gs~l~ri- 103 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSR-DGRKLLTSSRDWSIKLWDLLKGSPLKRI- 103 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecC-CCCEeeeecCCceeEEEeccCCCceeEE-
Confidence 68999999999999999999999999999999999999999999999999 9999999999999999999987754443
Q ss_pred ecCCCCEEEEEeec-CCCEEEEEeCCCeEEEEEccCCCcccceeecc--CCCCCeeEEEecCCCCcEEEEecCCCCCeEE
Q 019847 141 KAHSGEVCGLKWSN-EGNLLASGGDDNVVRIWERSKMSSSKSLHRFT--DHCGGVKALAWSPHQVNVLATGGGREDGCIK 217 (335)
Q Consensus 141 ~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~ 217 (335)
...++|+...|+| +.+..++.-.+..-.+-++..+. ...+..-. ..+....+..|.+.|+++++ |...|.+.
T Consensus 104 -rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~-h~~Lp~d~d~dln~sas~~~fdr~g~yIit---GtsKGkll 178 (405)
T KOG1273|consen 104 -RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK-HSVLPKDDDGDLNSSASHGVFDRRGKYIIT---GTSKGKLL 178 (405)
T ss_pred -EccCccceeeeccccCCeEEEEEecCCcEEEEecCCc-eeeccCCCccccccccccccccCCCCEEEE---ecCcceEE
Confidence 3688999999999 44444444445445555554321 11111100 01112233468888876666 34799999
Q ss_pred EEECCCCceEEEeecC--CcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCC---------ceeecccC--CCCce
Q 019847 218 IWNVQKGTCIHGIDAK--AQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNM---------TKVGELQS--SNSRI 284 (335)
Q Consensus 218 i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~---------~~~~~~~~--~~~~i 284 (335)
++|..+.+++..++.. ..|..+.++..|+.++.- +.|..|+.|+...- ++.+.++. ....-
T Consensus 179 v~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiN------tsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~W 252 (405)
T KOG1273|consen 179 VYDAETLECVASFRITSVQAIKQIIVSRKGRFLIIN------TSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQW 252 (405)
T ss_pred EEecchheeeeeeeechheeeeEEEEeccCcEEEEe------cCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhh
Confidence 9999999999888754 578999999999998876 67999999998631 11122221 11234
Q ss_pred eEeEEcCCCCEEEEEeC-CCcEEEEecCCCCCCCCccc
Q 019847 285 LDLSQSPDGLTVATAGA-DETIRFWEAFGPSGDEDSVS 321 (335)
Q Consensus 285 ~~~~~~~~~~~l~~~~~-dg~v~iw~~~~~~~~~~~~~ 321 (335)
.+++|+.+|.|++.++. -..++||.-..+.....+.+
T Consensus 253 k~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG 290 (405)
T KOG1273|consen 253 KKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHG 290 (405)
T ss_pred hheeecCCccEEEeccccceeEEEEecCCcceeeeecC
Confidence 57889999999988764 45699999888776554433
No 156
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.93 E-value=7.1e-24 Score=165.29 Aligned_cols=251 Identities=20% Similarity=0.311 Sum_probs=195.9
Q ss_pred CCCceEEEEcCCCC-EEEEEECCCcEEEEeCCCce---------eEeeecccccceeEeeecCCCCCEEEEeeCCCcEEE
Q 019847 58 DDYPTSVSWSHDAK-TLAVGYMDSKLQLWDAETSK---------LVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIIN 127 (335)
Q Consensus 58 ~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 127 (335)
..++..+.|.++.. .+++|+.|..|++|-++.++ ....+..|...|+++.|+| ++++|++|+.+|.+.+
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p-~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSP-DGELLASGGDGGEVFL 91 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcC-CcCeeeecCCCceEEE
Confidence 46789999998766 99999999999999886432 3445778999999999999 9999999999999999
Q ss_pred Eecc--------c-----C--CeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCe
Q 019847 128 HDVR--------V-----S--NNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGV 192 (335)
Q Consensus 128 ~d~~--------~-----~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v 192 (335)
|-.. + . ....+.+.+|...|..++|+|+++++++++.|..+++||+.. +.....+..|...+
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~---G~l~~~~~dh~~yv 168 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHA---GQLLAILDDHEHYV 168 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEecc---ceeEeecccccccc
Confidence 9865 2 1 124556778999999999999999999999999999999887 45577888999999
Q ss_pred eEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEee-----------cCC-------------cEeEEEeCCCCcee
Q 019847 193 KALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGID-----------AKA-------------QICGLEWNRHHKEI 248 (335)
Q Consensus 193 ~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~-----------~~~-------------~~~~~~~~~~~~~~ 248 (335)
..++|.|-++++..-+ .|...+.+++...+.+.... .++ -...++|+|+|..+
T Consensus 169 qgvawDpl~qyv~s~s---~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~ll 245 (434)
T KOG1009|consen 169 QGVAWDPLNQYVASKS---SDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLL 245 (434)
T ss_pred ceeecchhhhhhhhhc---cCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEE
Confidence 9999999997666655 57777777765443332221 011 13446788888887
Q ss_pred eeeee---------------------------------------------------------------eeeecCCCeEEE
Q 019847 249 LSGHG---------------------------------------------------------------FSASGDGNKLCL 265 (335)
Q Consensus 249 ~~~~~---------------------------------------------------------------~~~~~~~~~i~i 265 (335)
++..+ ..+-...+.+.+
T Consensus 246 vtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyv 325 (434)
T KOG1009|consen 246 VTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYV 325 (434)
T ss_pred EcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEE
Confidence 76421 112234577888
Q ss_pred EECCCCceeeccc-CCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCC
Q 019847 266 WKYPNMTKVGELQ-SSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSG 315 (335)
Q Consensus 266 ~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~ 315 (335)
||.++..++.... -|-..|++++|++||..|+..+.||...+-.++..+.
T Consensus 326 ydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 326 YDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred eccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhc
Confidence 8888877776654 3777899999999999999999999998877766543
No 157
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.93 E-value=7.5e-22 Score=163.27 Aligned_cols=271 Identities=13% Similarity=0.203 Sum_probs=182.7
Q ss_pred EEEecCCeEEEEEecC-CceeeEEeecCCCCCceEEEEcCCCCEEEEEE-CCCcEEEEeCC-Ccee--Eeeeccccccee
Q 019847 30 LAVALGPVLFLWKWEN-GKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGY-MDSKLQLWDAE-TSKL--VRNLEGHHRRVA 104 (335)
Q Consensus 30 ~~~~~~~~i~vw~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw~~~-~~~~--~~~~~~~~~~v~ 104 (335)
++...++.|.+|++.+ ++......++ +...+..++++|++++|++++ .++.|.+|+++ +++. +.... ......
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~ 83 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPT 83 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCce
Confidence 3446789999999964 4543333333 345578899999999987765 57889999986 3332 22222 334567
Q ss_pred EeeecCCCCCEEEEee-CCCcEEEEecccCCee---eEEeecCCCCEEEEEeecCCCEEEEEe-CCCeEEEEEccCCCcc
Q 019847 105 TSSWNHWNGHILTSGS-KDKSIINHDVRVSNNV---TSCIKAHSGEVCGLKWSNEGNLLASGG-DDNVVRIWERSKMSSS 179 (335)
Q Consensus 105 ~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~ 179 (335)
.+.++| +++.+++++ .++.|.+|++++.... .... .+......++++|+++++++++ .++.|.+||++.....
T Consensus 84 ~i~~~~-~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l 161 (330)
T PRK11028 84 HISTDH-QGRFLFSASYNANCVSVSPLDKDGIPVAPIQII-EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHL 161 (330)
T ss_pred EEEECC-CCCEEEEEEcCCCeEEEEEECCCCCCCCceeec-cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcc
Confidence 899999 888777765 4889999999744322 1212 2334567788999999886555 5689999999763221
Q ss_pred cc----eeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCC--Cc--eEEEeec-------CCcEeEEEeCCC
Q 019847 180 KS----LHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQK--GT--CIHGIDA-------KAQICGLEWNRH 244 (335)
Q Consensus 180 ~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~--~~--~~~~~~~-------~~~~~~~~~~~~ 244 (335)
.. ..... .......+.|+|++++++++.. .++.|.+|++.. ++ .+..+.. ......+.++|+
T Consensus 162 ~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~--~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pd 238 (330)
T PRK11028 162 VAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNE--LNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPD 238 (330)
T ss_pred cccCCCceecC-CCCCCceEEECCCCCEEEEEec--CCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCC
Confidence 11 01111 1234678999999988878764 589999999973 32 2333321 112335889999
Q ss_pred CceeeeeeeeeeecCCCeEEEEECCCCce----eecccCCCCceeEeEEcCCCCEEEEEeC-CCcEEEEecCCC
Q 019847 245 HKEILSGHGFSASGDGNKLCLWKYPNMTK----VGELQSSNSRILDLSQSPDGLTVATAGA-DETIRFWEAFGP 313 (335)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~i~i~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~v~iw~~~~~ 313 (335)
+++++++. ..++.|.+|++..... +..... ......+.++|+|++|+++.. ++.|.+|+++..
T Consensus 239 g~~lyv~~-----~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~ 306 (330)
T PRK11028 239 GRHLYACD-----RTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGE 306 (330)
T ss_pred CCEEEEec-----CCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEcCC
Confidence 99988763 4578999999865432 222222 124567899999999998875 899999998654
No 158
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=1.6e-22 Score=152.43 Aligned_cols=243 Identities=19% Similarity=0.321 Sum_probs=182.0
Q ss_pred cceeeeecCCceEEEecCCeEEEEEec--CCceeeEEeecCCCCCceEEEEcC--CCCEEEEEECCCcEEEEeCCC----
Q 019847 18 YSKVIDWGRNNVLAVALGPVLFLWKWE--NGKVKKLLQVPGEDDYPTSVSWSH--DAKTLAVGYMDSKLQLWDAET---- 89 (335)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~i~vw~~~--~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iw~~~~---- 89 (335)
...+++|++.++++++.|++|+|||.+ ++.....-....|.+.|..+.|.+ -|+.+|+++.|+++.||.-..
T Consensus 17 hdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~ 96 (361)
T KOG2445|consen 17 HDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEE 96 (361)
T ss_pred eeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccc
Confidence 334455566889999999999999964 344555556678999999999976 689999999999999997521
Q ss_pred -----ceeEeeecccccceeEeeecCC-CCCEEEEeeCCCcEEEEecccCCeeeE------------EeecCCCCEEEEE
Q 019847 90 -----SKLVRNLEGHHRRVATSSWNHW-NGHILTSGSKDKSIINHDVRVSNNVTS------------CIKAHSGEVCGLK 151 (335)
Q Consensus 90 -----~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~------------~~~~~~~~i~~~~ 151 (335)
......+......|+.+.|.|. -+-.+++++.||.+++|+......+.+ ....+..+..|+.
T Consensus 97 ~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~Cvs 176 (361)
T KOG2445|consen 97 AHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVS 176 (361)
T ss_pred cccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEe
Confidence 1234456667789999999984 355789999999999999764332211 1223667788999
Q ss_pred eec---CCCEEEEEeCC-----CeEEEEEccCCC-cccceeeccCCCCCeeEEEecCCCC---cEEEEecCCCCCeEEEE
Q 019847 152 WSN---EGNLLASGGDD-----NVVRIWERSKMS-SSKSLHRFTDHCGGVKALAWSPHQV---NVLATGGGREDGCIKIW 219 (335)
Q Consensus 152 ~~~---~~~~l~~~~~d-----g~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~g~~d~~i~i~ 219 (335)
|+| ...+||+|+.+ +.++||...... ....+..+.+|..+|+.++|.|+-. +++++++ .|| |+||
T Consensus 177 Wn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~--kDg-v~I~ 253 (361)
T KOG2445|consen 177 WNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVAT--KDG-VRIF 253 (361)
T ss_pred eccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEee--cCc-EEEE
Confidence 998 45688888865 478999876544 4556777889999999999999743 4777776 899 9999
Q ss_pred ECCCC--------------------ceEEEee-cCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECC
Q 019847 220 NVQKG--------------------TCIHGID-AKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYP 269 (335)
Q Consensus 220 d~~~~--------------------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~ 269 (335)
.++.. +.+..+. +..++..+.|+-.|..|.+. ++||.+++|...
T Consensus 254 ~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsSt------GdDG~VRLWkan 318 (361)
T KOG2445|consen 254 KVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSST------GDDGCVRLWKAN 318 (361)
T ss_pred EEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeec------CCCceeeehhhh
Confidence 98731 1122233 34589999998888777765 899999999754
No 159
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.92 E-value=1.7e-22 Score=153.40 Aligned_cols=262 Identities=17% Similarity=0.281 Sum_probs=193.8
Q ss_pred CCceEEEEcCCCCEEEEEECCCcEEEEeCCCce------------eEeeec-ccccceeEeeec-------CCCCCEEEE
Q 019847 59 DYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSK------------LVRNLE-GHHRRVATSSWN-------HWNGHILTS 118 (335)
Q Consensus 59 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~------------~~~~~~-~~~~~v~~~~~~-------~~~~~~l~~ 118 (335)
.-...+.|+|||..|++-+.|..+++|++...- ....++ .....|...+|- | +.+++++
T Consensus 50 nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP-~t~l~a~ 128 (406)
T KOG2919|consen 50 NFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQP-STNLFAV 128 (406)
T ss_pred hhhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCC-ccceeee
Confidence 345678999999999999999999999985210 011111 123456666664 4 7789999
Q ss_pred eeCCCcEEEEecccCCeeeEEeec--CCC---CEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeec-----cCC
Q 019847 119 GSKDKSIINHDVRVSNNVTSCIKA--HSG---EVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRF-----TDH 188 (335)
Q Consensus 119 ~~~dg~i~~~d~~~~~~~~~~~~~--~~~---~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~ 188 (335)
.+.+.-|++||.-+++. ...+.+ |.. ...+++|+|||..|++|. ...|++||+..+......... .+.
T Consensus 129 ssr~~PIh~wdaftG~l-raSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq 206 (406)
T KOG2919|consen 129 SSRDQPIHLWDAFTGKL-RASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQ 206 (406)
T ss_pred ccccCceeeeecccccc-ccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccc
Confidence 99999999999987664 322222 332 346899999999999876 678999999544332222222 233
Q ss_pred CCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec-CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEE
Q 019847 189 CGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA-KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWK 267 (335)
Q Consensus 189 ~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d 267 (335)
.+-+.+++|+|.....++.++ ....+-||.-..+.++..+-. .+.|+.++|.++|+.+.+|. ..+..|..||
T Consensus 207 ~giisc~a~sP~~~~~~a~gs--Y~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGa-----Rk~dkIl~WD 279 (406)
T KOG2919|consen 207 KGIISCFAFSPMDSKTLAVGS--YGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGA-----RKDDKILCWD 279 (406)
T ss_pred cceeeeeeccCCCCcceeeec--ccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccc-----cCCCeEEEEe
Confidence 667899999999988999887 888899998888888777654 56899999999999998884 5689999999
Q ss_pred CCC-CceeecccCCCC-ceeE--eEEcCCCCEEEEEeCCCcEEEEecCC-CCCCCCccccccccccce
Q 019847 268 YPN-MTKVGELQSSNS-RILD--LSQSPDGLTVATAGADETIRFWEAFG-PSGDEDSVSHLAGLVSLK 330 (335)
Q Consensus 268 ~~~-~~~~~~~~~~~~-~i~~--~~~~~~~~~l~~~~~dg~v~iw~~~~-~~~~~~~~~~~~~i~~~~ 330 (335)
++. ..++..+..|.+ .-.. ....|++++|++|+.||.|++||++. +........+.+.+..++
T Consensus 280 iR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvs 347 (406)
T KOG2919|consen 280 IRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVS 347 (406)
T ss_pred ehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccccccccccee
Confidence 986 556777777755 2223 45578899999999999999999998 444555566666555544
No 160
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.92 E-value=1.4e-22 Score=171.70 Aligned_cols=267 Identities=19% Similarity=0.289 Sum_probs=201.2
Q ss_pred CeEEEEEecCCceeeEEeecCCCCCceEEEEcC-CCCEEEEEECCCcEEEEeCCCcee--Eee----ecccccceeEeee
Q 019847 36 PVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSH-DAKTLAVGYMDSKLQLWDAETSKL--VRN----LEGHHRRVATSSW 108 (335)
Q Consensus 36 ~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~--~~~----~~~~~~~v~~~~~ 108 (335)
+.+.+|+++.. ..+...+. -...|+|+.|+| +..++|.|..+|.|.+||+..+.. ... ...|..+++.+.|
T Consensus 222 ~~~~vW~~~~p-~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW 299 (555)
T KOG1587|consen 222 GVLLVWSLKNP-NTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW 299 (555)
T ss_pred ceEEEEecCCC-CCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEE
Confidence 37999999877 33344443 367899999999 567788888999999999987654 222 2358899999999
Q ss_pred cCCCC--CEEEEeeCCCcEEEEecccCCeeeEE-----ee------cCCCCEEEEEeec-CCCEEEEEeCCCeEEEEEcc
Q 019847 109 NHWNG--HILTSGSKDKSIINHDVRVSNNVTSC-----IK------AHSGEVCGLKWSN-EGNLLASGGDDNVVRIWERS 174 (335)
Q Consensus 109 ~~~~~--~~l~~~~~dg~i~~~d~~~~~~~~~~-----~~------~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~ 174 (335)
.. +. .-|++++.||.|..|+++.-..+... .. .....+++++|.+ +...+++|+++|.|.--+-.
T Consensus 300 ~~-~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~ 378 (555)
T KOG1587|consen 300 LQ-NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRK 378 (555)
T ss_pred ec-cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEecc
Confidence 76 33 44999999999999998743321111 11 1234678999988 67789999999998774332
Q ss_pred CCCcc-----cceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECC-CCceEEEeecCC-cEeEEEeCCCCce
Q 019847 175 KMSSS-----KSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQ-KGTCIHGIDAKA-QICGLEWNRHHKE 247 (335)
Q Consensus 175 ~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~-~~~~~~~~~~~~-~~~~~~~~~~~~~ 247 (335)
..... +....+..|.++|.++.++|-+..++.+++ |.++++|... ...++..+.... .+.+++|||....
T Consensus 379 g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g---DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpa 455 (555)
T KOG1587|consen 379 GYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG---DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPA 455 (555)
T ss_pred CCcccccccccccccccccCcceEeeecCCCccceeeeec---cceeEeccccCCCCcchhhhhccceeeeeEEcCcCce
Confidence 22111 224456678999999999999998999885 9999999987 666666665544 5999999999877
Q ss_pred eeeeeeeeeecCCCeEEEEECCC--CceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCC
Q 019847 248 ILSGHGFSASGDGNKLCLWKYPN--MTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGP 313 (335)
Q Consensus 248 ~~~~~~~~~~~~~~~i~i~d~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~ 313 (335)
++. +...+|.+.+||+.. ..++.+.+.+....+.+.|+++|+.|++|...|.+.+|++...
T Consensus 456 vF~-----~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 456 VFA-----TVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred EEE-----EEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 643 347799999999865 4455555555666788899999999999999999999999753
No 161
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.92 E-value=1.6e-22 Score=153.61 Aligned_cols=271 Identities=18% Similarity=0.309 Sum_probs=206.1
Q ss_pred cceeeeecCC--ceEEEecCCeEEEEEecCCc------------eeeEEeecCCCCCceEEEEc-------CCCCEEEEE
Q 019847 18 YSKVIDWGRN--NVLAVALGPVLFLWKWENGK------------VKKLLQVPGEDDYPTSVSWS-------HDAKTLAVG 76 (335)
Q Consensus 18 ~~~~~~~~~~--~~~~~~~~~~i~vw~~~~~~------------~~~~~~~~~~~~~v~~~~~~-------~~~~~l~~~ 76 (335)
+.....|+|+ -+++-+.|+.+.+|++...- ....+++. ....|+..+|- |+..++|+.
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~-eg~tvydy~wYs~M~s~qP~t~l~a~s 129 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQ-EGETVYDYCWYSRMKSDQPSTNLFAVS 129 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEec-cCCEEEEEEeeeccccCCCccceeeec
Confidence 3456789985 58888899999999985321 11122222 24567777775 677899999
Q ss_pred ECCCcEEEEeCCCceeEeeecc--cc---cceeEeeecCCCCCEEEEeeCCCcEEEEecc-cCCee-eEE-----eecCC
Q 019847 77 YMDSKLQLWDAETSKLVRNLEG--HH---RRVATSSWNHWNGHILTSGSKDKSIINHDVR-VSNNV-TSC-----IKAHS 144 (335)
Q Consensus 77 ~~dg~i~iw~~~~~~~~~~~~~--~~---~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~-~~~~~-~~~-----~~~~~ 144 (335)
+.+.-|++||.-+|++...+.+ |. ....+++|+| ++..|++|. ...|++||+. .+... ... ..+..
T Consensus 130 sr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~-DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~ 207 (406)
T KOG2919|consen 130 SRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSP-DGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQK 207 (406)
T ss_pred cccCceeeeeccccccccchhhhhhHHhhhhheeEEecC-CCCeEeecc-cceEEEeeccCCCCCCcchhhhhccccccc
Confidence 9999999999999998877754 32 3567899999 999998765 6789999994 33221 111 12336
Q ss_pred CCEEEEEeec-CCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCC
Q 019847 145 GEVCGLKWSN-EGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQK 223 (335)
Q Consensus 145 ~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~ 223 (335)
+-+.+++|+| +...++.|+....+-||.-. ...++..+.+|.+.|+.++|.++|..+++-+. .|-.|..||++.
T Consensus 208 giisc~a~sP~~~~~~a~gsY~q~~giy~~~---~~~pl~llggh~gGvThL~~~edGn~lfsGaR--k~dkIl~WDiR~ 282 (406)
T KOG2919|consen 208 GIISCFAFSPMDSKTLAVGSYGQRVGIYNDD---GRRPLQLLGGHGGGVTHLQWCEDGNKLFSGAR--KDDKILCWDIRY 282 (406)
T ss_pred ceeeeeeccCCCCcceeeecccceeeeEecC---CCCceeeecccCCCeeeEEeccCcCeeccccc--CCCeEEEEeehh
Confidence 6789999999 56699999988888887743 35668888899999999999999987777654 789999999986
Q ss_pred Cc-eEEEeec----CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCC-CceeecccCCCCceeEeEEcCCCCEEE
Q 019847 224 GT-CIHGIDA----KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPN-MTKVGELQSSNSRILDLSQSPDGLTVA 297 (335)
Q Consensus 224 ~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~ 297 (335)
.+ ++..+.. .+.-.-....|.++.|++| +.+|.|++||++. +..+..+..+...++.++++|--.+++
T Consensus 283 ~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG------~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpila 356 (406)
T KOG2919|consen 283 SRDPVYALERHVGDTNQRILFDLDPKGEILASG------DTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILA 356 (406)
T ss_pred ccchhhhhhhhccCccceEEEecCCCCceeecc------CCCccEEEEecCCCCCcccccccccccccceecCcccceee
Confidence 43 3433332 2334456778999999988 7799999999998 777888889999999999999988888
Q ss_pred EEeCC
Q 019847 298 TAGAD 302 (335)
Q Consensus 298 ~~~~d 302 (335)
+++..
T Consensus 357 tssGq 361 (406)
T KOG2919|consen 357 TSSGQ 361 (406)
T ss_pred eccCc
Confidence 88754
No 162
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.92 E-value=3.4e-23 Score=170.26 Aligned_cols=261 Identities=17% Similarity=0.303 Sum_probs=190.2
Q ss_pred eEEEEcC---CCCEEEEEECCCcEEEEeCCCcee------EeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEeccc
Q 019847 62 TSVSWSH---DAKTLAVGYMDSKLQLWDAETSKL------VRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRV 132 (335)
Q Consensus 62 ~~~~~~~---~~~~l~~~~~dg~i~iw~~~~~~~------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 132 (335)
.+..|++ ....|+.+..||.|.++|...... +.....|...|..+.|.| ....|++++.|.++++||+++
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~ 131 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKT 131 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC-CceeEEEccCCceeeeeeecc
Confidence 3466765 345789999999999999865332 355668999999999999 899999999999999999986
Q ss_pred CCeee-EEeecCCCCEEEEEeec-CCCEEEEEeCCCeEEEEEccCCCc------------------------ccceeecc
Q 019847 133 SNNVT-SCIKAHSGEVCGLKWSN-EGNLLASGGDDNVVRIWERSKMSS------------------------SKSLHRFT 186 (335)
Q Consensus 133 ~~~~~-~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~------------------------~~~~~~~~ 186 (335)
.+..- ..+.+|.+.|.+++|.| +...|++|+.||.|.|||++.... .+.+....
T Consensus 132 s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~k 211 (720)
T KOG0321|consen 132 SRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWK 211 (720)
T ss_pred ceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccc
Confidence 65432 24789999999999999 667899999999999999874320 00112222
Q ss_pred CCCCCeeE---EEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec------------CCcEeEEEeCCCCceeeee
Q 019847 187 DHCGGVKA---LAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA------------KAQICGLEWNRHHKEILSG 251 (335)
Q Consensus 187 ~~~~~v~~---~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~ 251 (335)
.+...|.+ +.+..|...|+.++. .|+.|++||+++.......+. ...+.++..+..|.++++.
T Consensus 212 A~s~ti~ssvTvv~fkDe~tlaSaga--~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~As 289 (720)
T KOG0321|consen 212 AASNTIFSSVTVVLFKDESTLASAGA--ADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFAS 289 (720)
T ss_pred cccCceeeeeEEEEEeccceeeeccC--CCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEE
Confidence 34444544 555566655555553 799999999998654433221 1247788888888888766
Q ss_pred eeeeeecCCCeEEEEECCCCc--eeecccCCCCce--eEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCC-Ccccccccc
Q 019847 252 HGFSASGDGNKLCLWKYPNMT--KVGELQSSNSRI--LDLSQSPDGLTVATAGADETIRFWEAFGPSGDE-DSVSHLAGL 326 (335)
Q Consensus 252 ~~~~~~~~~~~i~i~d~~~~~--~~~~~~~~~~~i--~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~-~~~~~~~~i 326 (335)
+.|+.|++|++.+.. ++..+.++...- ..=..+||+.+|++|+.|...++|.+....... .+.+|...|
T Consensus 290 ------CtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eV 363 (720)
T KOG0321|consen 290 ------CTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREV 363 (720)
T ss_pred ------ecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEE
Confidence 569999999998643 444554443211 122468999999999999999999999986544 456888777
Q ss_pred cccee
Q 019847 327 VSLKT 331 (335)
Q Consensus 327 ~~~~~ 331 (335)
..+.+
T Consensus 364 t~V~w 368 (720)
T KOG0321|consen 364 TTVRW 368 (720)
T ss_pred EEEee
Confidence 76654
No 163
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=2.3e-24 Score=188.06 Aligned_cols=251 Identities=18% Similarity=0.340 Sum_probs=196.7
Q ss_pred CCcccccceeeeecC--C---ceEEE-ecCCeEEEEEecC----CceeeEEeecCCCCCceEEEEcCCC-CEEEEEECCC
Q 019847 12 YLMEDYYSKVIDWGR--N---NVLAV-ALGPVLFLWKWEN----GKVKKLLQVPGEDDYPTSVSWSHDA-KTLAVGYMDS 80 (335)
Q Consensus 12 ~~~~~~~~~~~~~~~--~---~~~~~-~~~~~i~vw~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg 80 (335)
.+..+...+.++|.. . .++++ ..||.|.+||... .+...+.+...|++.|..+.|++.. +.||+|+.||
T Consensus 60 s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~g 139 (1049)
T KOG0307|consen 60 SLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDG 139 (1049)
T ss_pred cccccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCC
Confidence 344566777899986 2 24555 4899999999765 2222344557899999999999955 5999999999
Q ss_pred cEEEEeCCCceeEeee--cccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCC--CCEEEEEeecCC
Q 019847 81 KLQLWDAETSKLVRNL--EGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHS--GEVCGLKWSNEG 156 (335)
Q Consensus 81 ~i~iw~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~--~~i~~~~~~~~~ 156 (335)
.|.|||+.+.+.-... ....+.|.+++|+....++|++++.+|.+.|||++..+.++.. ..+. ..+..++|+|+.
T Consensus 140 eI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~l-s~~~~~~~~S~l~WhP~~ 218 (1049)
T KOG0307|consen 140 EILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKL-SDTPGRMHCSVLAWHPDH 218 (1049)
T ss_pred cEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCccccc-ccCCCccceeeeeeCCCC
Confidence 9999999875544433 1245789999999888899999999999999999977665443 3333 357899999964
Q ss_pred -CEEEEEeCCC---eEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec
Q 019847 157 -NLLASGGDDN---VVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA 232 (335)
Q Consensus 157 -~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~ 232 (335)
..+++++.|. .|.+||+|... .+++.+.+|...|.++.|++.+..++.+++ .|+.|.+|+.++++.+..+..
T Consensus 219 aTql~~As~dd~~PviqlWDlR~as--sP~k~~~~H~~GilslsWc~~D~~lllSsg--kD~~ii~wN~~tgEvl~~~p~ 294 (1049)
T KOG0307|consen 219 ATQLLVASGDDSAPVIQLWDLRFAS--SPLKILEGHQRGILSLSWCPQDPRLLLSSG--KDNRIICWNPNTGEVLGELPA 294 (1049)
T ss_pred ceeeeeecCCCCCceeEeecccccC--CchhhhcccccceeeeccCCCCchhhhccc--CCCCeeEecCCCceEeeecCC
Confidence 4666666553 69999999754 456777899999999999999977888877 999999999999999999976
Q ss_pred -CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCc
Q 019847 233 -KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMT 272 (335)
Q Consensus 233 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~ 272 (335)
..-+..+.|+|....+++.. +-||.|.||.+....
T Consensus 295 ~~nW~fdv~w~pr~P~~~A~a-----sfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 295 QGNWCFDVQWCPRNPSVMAAA-----SFDGKISIYSLQGTD 330 (1049)
T ss_pred CCcceeeeeecCCCcchhhhh-----eeccceeeeeeecCC
Confidence 45689999999998665442 559999999987654
No 164
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=2.9e-22 Score=151.97 Aligned_cols=240 Identities=13% Similarity=0.197 Sum_probs=180.0
Q ss_pred ccccceeeeecCC--ceEEEecCCeEEEEEecCCce------------------------------------eeEEee--
Q 019847 15 EDYYSKVIDWGRN--NVLAVALGPVLFLWKWENGKV------------------------------------KKLLQV-- 54 (335)
Q Consensus 15 ~~~~~~~~~~~~~--~~~~~~~~~~i~vw~~~~~~~------------------------------------~~~~~~-- 54 (335)
+.-.+++++|+.+ .+++++.|+.|++|+++.... +.++.+
T Consensus 85 H~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K 164 (420)
T KOG2096|consen 85 HKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVK 164 (420)
T ss_pred cCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeee
Confidence 4556888888874 688888999999999864221 011111
Q ss_pred -------------------cCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCE
Q 019847 55 -------------------PGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHI 115 (335)
Q Consensus 55 -------------------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 115 (335)
..|+-.+..+-....+++|++++.|..|.+|++. |+.+..+......-...+.+| +|++
T Consensus 165 ~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP-~GRF 242 (420)
T KOG2096|consen 165 KTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSP-DGRF 242 (420)
T ss_pred cccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCC-CCcE
Confidence 0122334444445567789999999999999998 899998888878888899999 9999
Q ss_pred EEEeeCCCcEEEEecccCC-------eeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccC----CCcccceee
Q 019847 116 LTSGSKDKSIINHDVRVSN-------NVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSK----MSSSKSLHR 184 (335)
Q Consensus 116 l~~~~~dg~i~~~d~~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~ 184 (335)
+++++..-.+++|.+--.+ .....+.+|...|..++|+++...+++.+.||++++||++- .+..+.++.
T Consensus 243 ia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~ 322 (420)
T KOG2096|consen 243 IAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKE 322 (420)
T ss_pred EEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhc
Confidence 9999999999999974221 11345789999999999999999999999999999999752 122222322
Q ss_pred c----cCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEee--cCCcEeEEEeCCCCceeeeeeeeeeec
Q 019847 185 F----TDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGID--AKAQICGLEWNRHHKEILSGHGFSASG 258 (335)
Q Consensus 185 ~----~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (335)
. ....+....++.+|+++.+.++ ....++++..++++....++ +...|.++.|+++|++++++
T Consensus 323 g~~pl~aag~~p~RL~lsP~g~~lA~s----~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atc------- 391 (420)
T KOG2096|consen 323 GSAPLHAAGSEPVRLELSPSGDSLAVS----FGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATC------- 391 (420)
T ss_pred CCcchhhcCCCceEEEeCCCCcEEEee----cCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeee-------
Confidence 2 1123334589999999755554 35789999999998877775 46789999999999999986
Q ss_pred CCCeEEEEE
Q 019847 259 DGNKLCLWK 267 (335)
Q Consensus 259 ~~~~i~i~d 267 (335)
.|..++++.
T Consensus 392 Gdr~vrv~~ 400 (420)
T KOG2096|consen 392 GDRYVRVIR 400 (420)
T ss_pred cceeeeeec
Confidence 378888876
No 165
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=5.3e-22 Score=162.27 Aligned_cols=275 Identities=17% Similarity=0.252 Sum_probs=207.0
Q ss_pred ccccceeeeecC--CceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCC--EEEEEECCCcEEEEeCCCc
Q 019847 15 EDYYSKVIDWGR--NNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAK--TLAVGYMDSKLQLWDAETS 90 (335)
Q Consensus 15 ~~~~~~~~~~~~--~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~iw~~~~~ 90 (335)
+...+.+++.++ ..+++++.||+|+||.+.++.+.....+.+ .|.|++|+|.+. .||++-.. .+.|-+..-|
T Consensus 399 Htg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~---~I~~vaw~P~~~~~vLAvA~~~-~~~ivnp~~G 474 (733)
T KOG0650|consen 399 HTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDS---EIRSVAWNPLSDLCVLAVAVGE-CVLIVNPIFG 474 (733)
T ss_pred cCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecc---eeEEEEecCCCCceeEEEEecC-ceEEeCcccc
Confidence 444566666655 467777899999999999999988887754 699999999654 45554333 3444442111
Q ss_pred -------------------------------------eeEeeecccccceeEeeecCCCCCEEEEeeCC---CcEEEEec
Q 019847 91 -------------------------------------KLVRNLEGHHRRVATSSWNHWNGHILTSGSKD---KSIINHDV 130 (335)
Q Consensus 91 -------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~~~d~ 130 (335)
.-+...-.|...|..+.|+. .|++|++...+ ..|.|+++
T Consensus 475 ~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr-kGDYlatV~~~~~~~~VliHQL 553 (733)
T KOG0650|consen 475 DRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR-KGDYLATVMPDSGNKSVLIHQL 553 (733)
T ss_pred chhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeec-CCceEEEeccCCCcceEEEEec
Confidence 00122234778899999999 99999988654 47889998
Q ss_pred ccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecC
Q 019847 131 RVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGG 210 (335)
Q Consensus 131 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g 210 (335)
..... ...+....+.|.++.|+|...+|++++ ...|++||+.. ...++.+......|..++.+|.|.++++.+
T Consensus 554 SK~~s-Q~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~k---qelvKkL~tg~kwiS~msihp~GDnli~gs-- 626 (733)
T KOG0650|consen 554 SKRKS-QSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSK---QELVKKLLTGSKWISSMSIHPNGDNLILGS-- 626 (733)
T ss_pred ccccc-cCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhH---HHHHHHHhcCCeeeeeeeecCCCCeEEEec--
Confidence 74443 234545678899999999888888887 46899999876 344555555677899999999999888854
Q ss_pred CCCCeEEEEECCCC-ceEEEeecC-CcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECC------C---CceeecccC
Q 019847 211 REDGCIKIWNVQKG-TCIHGIDAK-AQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYP------N---MTKVGELQS 279 (335)
Q Consensus 211 ~~d~~i~i~d~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~------~---~~~~~~~~~ 279 (335)
.|+.+..+|+.-. ++.+++..+ ..+.+++|++.-..++++ ++||.+.||.-. . --++..+++
T Consensus 627 -~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~------sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~g 699 (733)
T KOG0650|consen 627 -YDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASG------SDDGTVIVFHGMVYNDLLQNPLIVPLKRLRG 699 (733)
T ss_pred -CCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeee------cCCCcEEEEeeeeehhhhcCCceEeeeeccC
Confidence 7999999999754 455666654 578999999999998887 789999998532 1 234567788
Q ss_pred CCCc----eeEeEEcCCCCEEEEEeCCCcEEEE
Q 019847 280 SNSR----ILDLSQSPDGLTVATAGADETIRFW 308 (335)
Q Consensus 280 ~~~~----i~~~~~~~~~~~l~~~~~dg~v~iw 308 (335)
|... |.+..|+|...+|++++.||+|++|
T Consensus 700 H~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 700 HEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred ceeecccceEeecccCCCceEEecCCCceEEee
Confidence 8654 8899999999999999999999998
No 166
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.90 E-value=6.4e-21 Score=142.88 Aligned_cols=280 Identities=17% Similarity=0.283 Sum_probs=203.4
Q ss_pred ccceeeeecC----CceEE-Ee----cCCeEEEEEec--CCceeeEEeecCCCCCceEEEEcCCC-----CEEEEEECCC
Q 019847 17 YYSKVIDWGR----NNVLA-VA----LGPVLFLWKWE--NGKVKKLLQVPGEDDYPTSVSWSHDA-----KTLAVGYMDS 80 (335)
Q Consensus 17 ~~~~~~~~~~----~~~~~-~~----~~~~i~vw~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~l~~~~~dg 80 (335)
+...+++|+. ...++ ++ ..+.|.|-.++ +++...... ..|..+++.+.|.|+. ++||+++ |
T Consensus 45 ~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~-fd~~YP~tK~~wiPd~~g~~pdlLATs~-D- 121 (364)
T KOG0290|consen 45 WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDAN-FDHPYPVTKLMWIPDSKGVYPDLLATSS-D- 121 (364)
T ss_pred CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCC-CCCCCCccceEecCCccccCcchhhccc-C-
Confidence 4556688883 34444 44 24667776654 445444333 3688999999999976 3556553 3
Q ss_pred cEEEEeCCCceeE----ee-----ecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCC--eeeEEeecCCCCEEE
Q 019847 81 KLQLWDAETSKLV----RN-----LEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSN--NVTSCIKAHSGEVCG 149 (335)
Q Consensus 81 ~i~iw~~~~~~~~----~~-----~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~--~~~~~~~~~~~~i~~ 149 (335)
.+|+|.+...+.. .. -..+..++++..|+..+.+++.+++-|-+..+||++++. .+...+-.|..+|..
T Consensus 122 ~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~D 201 (364)
T KOG0290|consen 122 FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYD 201 (364)
T ss_pred eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeE
Confidence 7999998742111 11 123557999999999899999999999999999999863 356678899999999
Q ss_pred EEeecCC-CEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCC-ceE
Q 019847 150 LKWSNEG-NLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKG-TCI 227 (335)
Q Consensus 150 ~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-~~~ 227 (335)
++|...+ +.||+.+.||.+|+||+|..+....+..-.....+...++|++...+++++-. .....|.+.|++.. .++
T Consensus 202 Iaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~-~dS~~V~iLDiR~P~tpv 280 (364)
T KOG0290|consen 202 IAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFA-MDSNKVVILDIRVPCTPV 280 (364)
T ss_pred EEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhh-cCCceEEEEEecCCCcce
Confidence 9999843 58999999999999999987665555554444678899999999988888764 24568999999864 456
Q ss_pred EEeec-CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCce------eecccCCCCceeEeEEcC-CCCEEEEE
Q 019847 228 HGIDA-KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTK------VGELQSSNSRILDLSQSP-DGLTVATA 299 (335)
Q Consensus 228 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~------~~~~~~~~~~i~~~~~~~-~~~~l~~~ 299 (335)
..++. ...|+.++|.|....-++ ++++|....+||+.+.-. +..+. -.+.|+.+.|++ .+.+++.+
T Consensus 281 a~L~~H~a~VNgIaWaPhS~~hic-----taGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~ 354 (364)
T KOG0290|consen 281 ARLRNHQASVNGIAWAPHSSSHIC-----TAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAIC 354 (364)
T ss_pred ehhhcCcccccceEecCCCCceee-----ecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEE
Confidence 66654 568999999999765543 348999999999976332 22222 456799999996 45677766
Q ss_pred eCCCcEEE
Q 019847 300 GADETIRF 307 (335)
Q Consensus 300 ~~dg~v~i 307 (335)
.. +.+.+
T Consensus 355 ~~-kklei 361 (364)
T KOG0290|consen 355 FG-KKLEI 361 (364)
T ss_pred ec-CeeeE
Confidence 54 44444
No 167
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.90 E-value=3e-22 Score=165.10 Aligned_cols=126 Identities=20% Similarity=0.330 Sum_probs=98.8
Q ss_pred cceeeeecC---CceEEEecCCeEEEEEecCCceee----EEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCc
Q 019847 18 YSKVIDWGR---NNVLAVALGPVLFLWKWENGKVKK----LLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETS 90 (335)
Q Consensus 18 ~~~~~~~~~---~~~~~~~~~~~i~vw~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 90 (335)
.++.+.|++ ..+++++.|..|+||.+..+.... ...+.+.+-.|-++.|+|...-|+..+..|.++|||+.++
T Consensus 81 ~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~v~i~D~stq 160 (1012)
T KOG1445|consen 81 QVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHGSVYITDISTQ 160 (1012)
T ss_pred eeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCceEEEEEcccC
Confidence 345566665 445667789999999998553222 2233344567889999996655666667899999999999
Q ss_pred eeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCC
Q 019847 91 KLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHS 144 (335)
Q Consensus 91 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~ 144 (335)
+.+.++.+|...|.+..|+. ++.+|++++.|..|+|||.+.....++...+|.
T Consensus 161 k~~~el~~h~d~vQSa~Wse-DG~llatscKdkqirifDPRa~~~piQ~te~H~ 213 (1012)
T KOG1445|consen 161 KTAVELSGHTDKVQSADWSE-DGKLLATSCKDKQIRIFDPRASMEPIQTTEGHG 213 (1012)
T ss_pred ceeecccCCchhhhcccccc-CCceEeeecCCcceEEeCCccCCCccccccccc
Confidence 99999999999999999999 999999999999999999987666555555554
No 168
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.90 E-value=9.6e-22 Score=147.26 Aligned_cols=237 Identities=22% Similarity=0.341 Sum_probs=181.2
Q ss_pred CCCcccccceeeeecCCc-----eEEEecCCeEEEEEecC--CceeeEEee-----cCCCCCceEEEEcC-CCCEEEEEE
Q 019847 11 PYLMEDYYSKVIDWGRNN-----VLAVALGPVLFLWKWEN--GKVKKLLQV-----PGEDDYPTSVSWSH-DAKTLAVGY 77 (335)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~i~vw~~~~--~~~~~~~~~-----~~~~~~v~~~~~~~-~~~~l~~~~ 77 (335)
+.+.+.|+++.+-|.|+. -+.++.+..+++|.+.. .+......+ ..+..++++..|+. +.+++.+++
T Consensus 91 a~fd~~YP~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS 170 (364)
T KOG0290|consen 91 ANFDHPYPVTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS 170 (364)
T ss_pred CCCCCCCCccceEecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence 345667888889998853 23344566899999874 333222222 24567899999987 778999999
Q ss_pred CCCcEEEEeCCCce---eEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeec--CCCCEEEEEe
Q 019847 78 MDSKLQLWDAETSK---LVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKA--HSGEVCGLKW 152 (335)
Q Consensus 78 ~dg~i~iw~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~--~~~~i~~~~~ 152 (335)
-|-+..|||++++. ....+-.|..+|..++|.....+.|++.+.||.+++||++..+.-...+.. ...+...++|
T Consensus 171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLsw 250 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSW 250 (364)
T ss_pred ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeecc
Confidence 99999999999873 356677899999999999866789999999999999999966543333322 2457888999
Q ss_pred ec-CCCEEEEEeCC-CeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCc-----
Q 019847 153 SN-EGNLLASGGDD-NVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGT----- 225 (335)
Q Consensus 153 ~~-~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~----- 225 (335)
++ |.+++|+-..| ..|.|.|+|.+ ..++..+.+|.+.|+.++|.|.....+++++ .|....+||+...-
T Consensus 251 nkqDpnymATf~~dS~~V~iLDiR~P--~tpva~L~~H~a~VNgIaWaPhS~~hictaG--DD~qaliWDl~q~~~~~~~ 326 (364)
T KOG0290|consen 251 NKQDPNYMATFAMDSNKVVILDIRVP--CTPVARLRNHQASVNGIAWAPHSSSHICTAG--DDCQALIWDLQQMPRENGE 326 (364)
T ss_pred CcCCchHHhhhhcCCceEEEEEecCC--CcceehhhcCcccccceEecCCCCceeeecC--CcceEEEEecccccccCCC
Confidence 98 66788876655 46999999976 3568889999999999999999999999987 99999999997532
Q ss_pred -eEEEeecCCcEeEEEeCCC-Cceeeee
Q 019847 226 -CIHGIDAKAQICGLEWNRH-HKEILSG 251 (335)
Q Consensus 226 -~~~~~~~~~~~~~~~~~~~-~~~~~~~ 251 (335)
++..+..+.+|..+.|++. ...++.+
T Consensus 327 dPilay~a~~EVNqi~Ws~~~~Dwiai~ 354 (364)
T KOG0290|consen 327 DPILAYTAGGEVNQIQWSSSQPDWIAIC 354 (364)
T ss_pred CchhhhhccceeeeeeecccCCCEEEEE
Confidence 2334456778999999964 4455444
No 169
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.90 E-value=7.3e-22 Score=147.79 Aligned_cols=252 Identities=17% Similarity=0.265 Sum_probs=180.0
Q ss_pred eEEEEEecCCce-------eeEEeec-CCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCcee-Eeeec-----ccccc
Q 019847 37 VLFLWKWENGKV-------KKLLQVP-GEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKL-VRNLE-----GHHRR 102 (335)
Q Consensus 37 ~i~vw~~~~~~~-------~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~-----~~~~~ 102 (335)
.+.||.+....- ..+-.+. .+-+.|.|+.|.|++..+++-. |..|.+|+++.+.. +..+. .+...
T Consensus 94 ~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ 172 (370)
T KOG1007|consen 94 GAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHS 172 (370)
T ss_pred eEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccce
Confidence 678999864321 1122222 3445899999999999998886 78999999987655 33332 24567
Q ss_pred eeEeeecC-CCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCC-CEEEEEeCCCeEEEEEccCCCccc
Q 019847 103 VATSSWNH-WNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEG-NLLASGGDDNVVRIWERSKMSSSK 180 (335)
Q Consensus 103 v~~~~~~~-~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~ 180 (335)
.++-+|+| .+++.+++ ..|+++..||+++..+...+-..|...|..+.|+|+. .+|++|+.||.|++||.|.. ..
T Consensus 173 ftsg~WspHHdgnqv~t-t~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~t--k~ 249 (370)
T KOG1007|consen 173 FTSGAWSPHHDGNQVAT-TSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKT--KF 249 (370)
T ss_pred ecccccCCCCccceEEE-eCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCC--Cc
Confidence 88889999 45666655 5589999999999888888888999999999999964 57889999999999999875 45
Q ss_pred ceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCC
Q 019847 181 SLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDG 260 (335)
Q Consensus 181 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (335)
+++.+.+|...|.++.|+|....|+.+++ .|..|.+|....-.....+.... +....- ..+
T Consensus 250 pv~el~~HsHWvW~VRfn~~hdqLiLs~~--SDs~V~Lsca~svSSE~qi~~~~---------dese~e--------~~d 310 (370)
T KOG1007|consen 250 PVQELPGHSHWVWAVRFNPEHDQLILSGG--SDSAVNLSCASSVSSEQQIEFED---------DESESE--------DED 310 (370)
T ss_pred cccccCCCceEEEEEEecCccceEEEecC--CCceeEEEecccccccccccccc---------ccccCc--------chh
Confidence 78889999999999999999999999987 99999999875432222221111 000000 000
Q ss_pred CeEEEEECCCCceeecccCCCCceeEeEEcCCCCE-EEEEeCCCcEEEEecCC
Q 019847 261 NKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLT-VATAGADETIRFWEAFG 312 (335)
Q Consensus 261 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~dg~v~iw~~~~ 312 (335)
..=++= .-....+.++..|...|.+++||.-..+ +|+-+.||++.|=++..
T Consensus 311 seer~k-pL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 311 SEERVK-PLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred hHHhcc-cccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 000000 1112234567789999999999986654 56779999998766543
No 170
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.90 E-value=4e-22 Score=147.27 Aligned_cols=249 Identities=17% Similarity=0.249 Sum_probs=188.8
Q ss_pred eEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeec-ccccceeEeeecCCCCCEEEEeeCCCcEEEE
Q 019847 50 KLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLE-GHHRRVATSSWNHWNGHILTSGSKDKSIINH 128 (335)
Q Consensus 50 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~ 128 (335)
+.+.+.+|.+.++++.|..+++ |.+|...|.|++|++++.+.+..++ .+...|+.+.-.| + ..+.+-+.|+.+.+|
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p-~-d~l~tqgRd~~L~lw 82 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIP-N-DSLDTQGRDPLLILW 82 (323)
T ss_pred CeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecC-C-cchhhcCCCceEEEE
Confidence 3556668999999999987764 9999999999999999999888888 5778899998887 4 778889999999999
Q ss_pred ecccCCee-----------------------e-EE----------------------------eecCCCCEEEEEeec-C
Q 019847 129 DVRVSNNV-----------------------T-SC----------------------------IKAHSGEVCGLKWSN-E 155 (335)
Q Consensus 129 d~~~~~~~-----------------------~-~~----------------------------~~~~~~~i~~~~~~~-~ 155 (335)
++....-+ . +. ..+..+.+.+..+.. +
T Consensus 83 ~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c 162 (323)
T KOG0322|consen 83 TIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHAC 162 (323)
T ss_pred EccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccc
Confidence 98531100 0 00 001223455555432 2
Q ss_pred C--CEEEEEeCCCeEEEEEccCCCc-------ccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCC--
Q 019847 156 G--NLLASGGDDNVVRIWERSKMSS-------SKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKG-- 224 (335)
Q Consensus 156 ~--~~l~~~~~dg~i~iwd~~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-- 224 (335)
+ -++++|.++|.+.+||+..... .+.......|..+|.++.+.+.-..=+. ++ .+..+..|++...
T Consensus 163 ~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGis-gg--a~dkl~~~Sl~~s~g 239 (323)
T KOG0322|consen 163 GSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGIS-GG--ADDKLVMYSLNHSTG 239 (323)
T ss_pred cceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcC-CC--ccccceeeeeccccC
Confidence 2 2577888999999999987421 2334445678999999999865433333 22 6778888887643
Q ss_pred ceE--EEeec-CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeC
Q 019847 225 TCI--HGIDA-KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGA 301 (335)
Q Consensus 225 ~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 301 (335)
.+. ..+.. +..+..+..-||++.++++ +-|+.|+||..++.+++..++.|.+.|++++|+|+...+|+++.
T Consensus 240 slq~~~e~~lknpGv~gvrIRpD~KIlATA------GWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaask 313 (323)
T KOG0322|consen 240 SLQIRKEITLKNPGVSGVRIRPDGKILATA------GWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASK 313 (323)
T ss_pred cccccceEEecCCCccceEEccCCcEEeec------ccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccC
Confidence 222 12222 4468889999999999987 77999999999999999999999999999999999999999999
Q ss_pred CCcEEEEec
Q 019847 302 DETIRFWEA 310 (335)
Q Consensus 302 dg~v~iw~~ 310 (335)
|++|.+|++
T Consensus 314 D~rISLWkL 322 (323)
T KOG0322|consen 314 DARISLWKL 322 (323)
T ss_pred CceEEeeec
Confidence 999999987
No 171
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.89 E-value=8.8e-22 Score=147.37 Aligned_cols=202 Identities=27% Similarity=0.377 Sum_probs=164.4
Q ss_pred cceeeeecCC-ceEEEecCCeEEEEEecCCcee-eEEee---cCCCCCceEEEEcC--CCCEEEEEECCCcEEEEeCCCc
Q 019847 18 YSKVIDWGRN-NVLAVALGPVLFLWKWENGKVK-KLLQV---PGEDDYPTSVSWSH--DAKTLAVGYMDSKLQLWDAETS 90 (335)
Q Consensus 18 ~~~~~~~~~~-~~~~~~~~~~i~vw~~~~~~~~-~~~~~---~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iw~~~~~ 90 (335)
.+.|+.|.|+ .-+++-.+..|.+|+++.+..+ ..... .+|....++-+|+| +++.+++. .|+++..||+++.
T Consensus 125 ~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~ 203 (370)
T KOG1007|consen 125 KINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTM 203 (370)
T ss_pred ceeeEEEcCCCCeeEEeccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccch
Confidence 6789999996 3445556999999999876642 22211 23566778889999 78888877 4889999999998
Q ss_pred eeEeeec-ccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeec-CCCEEEEEeCCCeE
Q 019847 91 KLVRNLE-GHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSN-EGNLLASGGDDNVV 168 (335)
Q Consensus 91 ~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i 168 (335)
+....+. .|...|..+.|+|+...+|++|+.||.|++||.+..+.++..+.+|...|.++.|+| ..+++++|+.|..|
T Consensus 204 ~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V 283 (370)
T KOG1007|consen 204 KKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAV 283 (370)
T ss_pred hhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCcee
Confidence 7776665 677899999999988889999999999999999998888999999999999999999 56789999999999
Q ss_pred EEEEccCCC--------------------------cccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECC
Q 019847 169 RIWERSKMS--------------------------SSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQ 222 (335)
Q Consensus 169 ~iwd~~~~~--------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~ 222 (335)
.+|...... ....+.++..|...|++++|+.-.+.++++-+ .||.+.|=.+.
T Consensus 284 ~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLS--YDGRviIs~V~ 361 (370)
T KOG1007|consen 284 NLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLS--YDGRVIISSVP 361 (370)
T ss_pred EEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEec--cCceEEeecCC
Confidence 999643211 01124567789999999999999999999988 99999886654
No 172
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=7.8e-21 Score=164.98 Aligned_cols=286 Identities=18% Similarity=0.267 Sum_probs=206.0
Q ss_pred ceeeeecC--CceEEEecCCeEEEEEecCCceeeEEeec-CCCCCceEEEEcC--CCCEEEEEECCCcEEEEeCC-----
Q 019847 19 SKVIDWGR--NNVLAVALGPVLFLWKWENGKVKKLLQVP-GEDDYPTSVSWSH--DAKTLAVGYMDSKLQLWDAE----- 88 (335)
Q Consensus 19 ~~~~~~~~--~~~~~~~~~~~i~vw~~~~~~~~~~~~~~-~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iw~~~----- 88 (335)
...+.+++ ..++++.....|++||.+.++....+... .....|+.+.+-. |..++++|+.||.|+||+-.
T Consensus 1067 pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~ 1146 (1387)
T KOG1517|consen 1067 PKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWK 1146 (1387)
T ss_pred CceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccC
Confidence 44566666 34455545679999999999875544432 1345688888865 55689999999999999742
Q ss_pred CceeEeeeccc-------ccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeec-CCCEEE
Q 019847 89 TSKLVRNLEGH-------HRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSN-EGNLLA 160 (335)
Q Consensus 89 ~~~~~~~~~~~-------~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~ 160 (335)
+.+++..+.+- .+.=.-+.|....| +|++++.-..|++||......+.....+....++++.-+. .|+.++
T Consensus 1147 ~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G-~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~ 1225 (1387)
T KOG1517|consen 1147 KPELVTAWSSLSDQLPGARGTGLVVDWQQQSG-HLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIA 1225 (1387)
T ss_pred CceeEEeeccccccCccCCCCCeeeehhhhCC-eEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEE
Confidence 23344333221 11224567877444 4555555889999999877666665556666778776544 579999
Q ss_pred EEeCCCeEEEEEccCCCcccceeeccCCCCC--eeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEe--e----c
Q 019847 161 SGGDDNVVRIWERSKMSSSKSLHRFTDHCGG--VKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGI--D----A 232 (335)
Q Consensus 161 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~--~----~ 232 (335)
+|..||.|++||.+.......+.....|+.. |..+.+.+.|-.-+++++ .||.|++||++.......+ . -
T Consensus 1226 AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs--~~G~I~~~DlR~~~~e~~~~iv~~~~y 1303 (1387)
T KOG1517|consen 1226 AGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGS--QDGDIQLLDLRMSSKETFLTIVAHWEY 1303 (1387)
T ss_pred EeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeec--cCCeEEEEecccCcccccceeeecccc
Confidence 9999999999999987666667777888877 999999998766566665 9999999999974222222 1 1
Q ss_pred CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCC-------CCceeEeEEcCCCCEEEEEeCCCcE
Q 019847 233 KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSS-------NSRILDLSQSPDGLTVATAGADETI 305 (335)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~-------~~~i~~~~~~~~~~~l~~~~~dg~v 305 (335)
++..+++..+++...+++| +. +.|+||++.. +.+..++.+ .+.+.+++|+|..-++|+|+.|..|
T Consensus 1304 Gs~lTal~VH~hapiiAsG------s~-q~ikIy~~~G-~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V 1375 (1387)
T KOG1517|consen 1304 GSALTALTVHEHAPIIASG------SA-QLIKIYSLSG-EQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTV 1375 (1387)
T ss_pred CccceeeeeccCCCeeeec------Cc-ceEEEEecCh-hhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceE
Confidence 3358999999999999987 33 9999999754 333333322 3457999999999999999999999
Q ss_pred EEEecCCCCC
Q 019847 306 RFWEAFGPSG 315 (335)
Q Consensus 306 ~iw~~~~~~~ 315 (335)
.||....+..
T Consensus 1376 ~iYs~~k~~~ 1385 (1387)
T KOG1517|consen 1376 SIYSCEKPRL 1385 (1387)
T ss_pred EEeecCCcCC
Confidence 9998876543
No 173
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2.8e-21 Score=150.72 Aligned_cols=258 Identities=15% Similarity=0.275 Sum_probs=191.7
Q ss_pred eecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCC------ceeEeeecc-cccceeEeeecCCCCCEEEEeeCCCcE
Q 019847 53 QVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAET------SKLVRNLEG-HHRRVATSSWNHWNGHILTSGSKDKSI 125 (335)
Q Consensus 53 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~------~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i 125 (335)
.+.+|.+.|.++.|+.++++|++|+.|-.+++|+++. .+++..... |...|.|++|.. .+..+++|..+++|
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~-~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL-ENRFLYSGERWGTV 129 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc-CCeeEecCCCccee
Confidence 3458999999999999999999999999999999853 355554443 458999999998 88999999999999
Q ss_pred EEEecccCCeeeEEe-ecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcE
Q 019847 126 INHDVRVSNNVTSCI-KAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNV 204 (335)
Q Consensus 126 ~~~d~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 204 (335)
...|+++.+.+.... ....+.|+.+..+|..+.|++.+.+|.|.+||.+.......+............+.|+|..+.|
T Consensus 130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~L 209 (609)
T KOG4227|consen 130 IKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPAL 209 (609)
T ss_pred EeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCcee
Confidence 999999776533221 1223589999999998999999999999999998765333333344455667889999999999
Q ss_pred EEEecCCCCCeEEEEECCCCce-EEE------eec-CCcEeEEEeCCCCceeeee-------------------------
Q 019847 205 LATGGGREDGCIKIWNVQKGTC-IHG------IDA-KAQICGLEWNRHHKEILSG------------------------- 251 (335)
Q Consensus 205 ~~~~~g~~d~~i~i~d~~~~~~-~~~------~~~-~~~~~~~~~~~~~~~~~~~------------------------- 251 (335)
+++.+ ..+-+-+||.+..+. +.. ++. ...-....|+|.|..+++-
T Consensus 210 i~~~~--~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~ 287 (609)
T KOG4227|consen 210 ILVNS--ETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNP 287 (609)
T ss_pred EEecc--ccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCC
Confidence 99987 888999999875421 100 000 1112333444444333221
Q ss_pred -----------------eeeeeecCCCeEEEEECCCC-----------------------ceeecccCCCCceeEeEEcC
Q 019847 252 -----------------HGFSASGDGNKLCLWKYPNM-----------------------TKVGELQSSNSRILDLSQSP 291 (335)
Q Consensus 252 -----------------~~~~~~~~~~~i~i~d~~~~-----------------------~~~~~~~~~~~~i~~~~~~~ 291 (335)
..+++++++-.|++|.+... +.+..+++|.+-++.+.|+|
T Consensus 288 ~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~ 367 (609)
T KOG4227|consen 288 NGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQ 367 (609)
T ss_pred CcceeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecC
Confidence 11456788999999987531 12334678999999999999
Q ss_pred CCCEEEEEeCCCcEEEEecCCC
Q 019847 292 DGLTVATAGADETIRFWEAFGP 313 (335)
Q Consensus 292 ~~~~l~~~~~dg~v~iw~~~~~ 313 (335)
...+|++.+-...+++|.-...
T Consensus 368 H~~~l~SSGVE~~~KlWS~~r~ 389 (609)
T KOG4227|consen 368 HNNLLVSSGVENSFKLWSDHRL 389 (609)
T ss_pred CcceEeccchhhheeccccccC
Confidence 9999999999999999975543
No 174
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.89 E-value=8.3e-20 Score=156.92 Aligned_cols=265 Identities=27% Similarity=0.512 Sum_probs=207.5
Q ss_pred ecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCce-eEeeeccccc-ceeEeee-cCCCCC-EEEEeeC-CCcEEEE
Q 019847 54 VPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSK-LVRNLEGHHR-RVATSSW-NHWNGH-ILTSGSK-DKSIINH 128 (335)
Q Consensus 54 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~~-~v~~~~~-~~~~~~-~l~~~~~-dg~i~~~ 128 (335)
...|...+..+.+.+.+..++.++.|+.+.+|+...+. ....+..... .+..+.+ .+ ++. .++..+. |+.+.+|
T Consensus 61 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSP-DGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECC-CcceEEeccCCCCccEEEE
Confidence 44688999999999999999999999999999998886 6666665443 6777777 66 555 5555444 9999999
Q ss_pred ecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeC-CCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEE
Q 019847 129 DVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGD-DNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLAT 207 (335)
Q Consensus 129 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 207 (335)
+..........+..|...|..++|+|++..+++++. |+.+++|++.. ...+..+..|...+.+++|+|++..++++
T Consensus 140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 216 (466)
T COG2319 140 DLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT---GKPLSTLAGHTDPVSSLAFSPDGGLLIAS 216 (466)
T ss_pred EecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCC---CceEEeeccCCCceEEEEEcCCcceEEEE
Confidence 998634556778889999999999999998888886 99999999876 34566677799999999999998745555
Q ss_pred ecCCCCCeEEEEECCCCceEE-EeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCce-eecccCCCCcee
Q 019847 208 GGGREDGCIKIWNVQKGTCIH-GIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTK-VGELQSSNSRIL 285 (335)
Q Consensus 208 ~~g~~d~~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~-~~~~~~~~~~i~ 285 (335)
++ .|+.+++||...+.... .+..+.......|+|++..++++ +.++.+++|+...... +..+..|...+.
T Consensus 217 ~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~d~~~~~~~~~~~~~~~~~~~~~~~~v~ 288 (466)
T COG2319 217 GS--SDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASG------SSDGTIRLWDLRSSSSLLRTLSGHSSSVL 288 (466)
T ss_pred ec--CCCcEEEEECCCCcEEeeecCCCCcceeEeECCCCCEEEEe------cCCCcEEEeeecCCCcEEEEEecCCccEE
Confidence 44 89999999999887777 45554433222799999666644 7899999999987665 444467888999
Q ss_pred EeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCcc--ccccccccce
Q 019847 286 DLSQSPDGLTVATAGADETIRFWEAFGPSGDEDSV--SHLAGLVSLK 330 (335)
Q Consensus 286 ~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~--~~~~~i~~~~ 330 (335)
++.|+|++..+++++.|+.+.+|+........... .|...+..+.
T Consensus 289 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (466)
T COG2319 289 SVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLS 335 (466)
T ss_pred EEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEE
Confidence 99999988889889999999999888766544443 4544444444
No 175
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.89 E-value=2.7e-21 Score=150.64 Aligned_cols=228 Identities=17% Similarity=0.308 Sum_probs=176.4
Q ss_pred CCeEEEEEe-cCCceeeE-EeecCCCCCceEEEEcC-CCCEEEEEECCCcEEEEeCCCc-------eeEeeeccccccee
Q 019847 35 GPVLFLWKW-ENGKVKKL-LQVPGEDDYPTSVSWSH-DAKTLAVGYMDSKLQLWDAETS-------KLVRNLEGHHRRVA 104 (335)
Q Consensus 35 ~~~i~vw~~-~~~~~~~~-~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~-------~~~~~~~~~~~~v~ 104 (335)
+|...+.-+ ++|+.... -...+|+.+|..++|+| +...||+|+.|.+|.||++..+ +++..+.+|...|-
T Consensus 56 Ggaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg 135 (472)
T KOG0303|consen 56 GGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVG 135 (472)
T ss_pred CcceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEE
Confidence 334444443 23443222 23468999999999999 6678899999999999998654 45677889999999
Q ss_pred EeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceee
Q 019847 105 TSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHR 184 (335)
Q Consensus 105 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 184 (335)
.++|+|...+.|++++.|..|.+||+.++..++. +. |...|.++.|+.+|.+|++.+.|..|+|||.+++ +.+..
T Consensus 136 ~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~-l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~---~~v~e 210 (472)
T KOG0303|consen 136 LVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALIT-LD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRG---TVVSE 210 (472)
T ss_pred EEeecccchhhHhhccCCceEEEEeccCCceeee-cC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCC---cEeee
Confidence 9999999999999999999999999998887665 33 9999999999999999999999999999998874 34555
Q ss_pred ccCCCCC-eeEEEecCCCCcEEEEec-CCCCCeEEEEECCCCc---eEEEeecCCcEeEEEeCCCCceeeeeeeeeeecC
Q 019847 185 FTDHCGG-VKALAWSPHQVNVLATGG-GREDGCIKIWNVQKGT---CIHGIDAKAQICGLEWNRHHKEILSGHGFSASGD 259 (335)
Q Consensus 185 ~~~~~~~-v~~~~~~~~~~~~~~~~~-g~~d~~i~i~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (335)
-.+|.+. -..+.|-.++. ++++|- ...+..+.+||..+-+ .+..++..+.+.---|+++...+..+ +-.
T Consensus 211 ~~~heG~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~-----GKG 284 (472)
T KOG0303|consen 211 GVAHEGAKPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLC-----GKG 284 (472)
T ss_pred cccccCCCcceeEEeccCc-eeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEE-----ecC
Confidence 4566553 45667888886 777653 2357889999876543 34556666777777788888877543 466
Q ss_pred CCeEEEEECCCCce
Q 019847 260 GNKLCLWKYPNMTK 273 (335)
Q Consensus 260 ~~~i~i~d~~~~~~ 273 (335)
|+.|+-|.+.+..+
T Consensus 285 D~~IRYyEit~d~P 298 (472)
T KOG0303|consen 285 DSSIRYFEITNEPP 298 (472)
T ss_pred CcceEEEEecCCCc
Confidence 99999999876553
No 176
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.89 E-value=8.4e-21 Score=147.90 Aligned_cols=235 Identities=21% Similarity=0.306 Sum_probs=177.3
Q ss_pred CCCEEEEE---ECCCcEEEEeCC-Ccee---EeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCC------e
Q 019847 69 DAKTLAVG---YMDSKLQLWDAE-TSKL---VRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSN------N 135 (335)
Q Consensus 69 ~~~~l~~~---~~dg~i~iw~~~-~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~------~ 135 (335)
+.+++|.. +..|...+.-+. +|+. .-.+.+|.++|..++|+|.+.+.|++|+.|.+|.+|.+..+. .
T Consensus 43 NPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lte 122 (472)
T KOG0303|consen 43 NPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTE 122 (472)
T ss_pred CCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCccc
Confidence 45566553 233455555443 3433 234678999999999999999999999999999999997543 2
Q ss_pred eeEEeecCCCCEEEEEeec-CCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCC
Q 019847 136 VTSCIKAHSGEVCGLKWSN-EGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDG 214 (335)
Q Consensus 136 ~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~ 214 (335)
....+.+|...|--++|+| -.+.|++++.|..|.+||+.++.. +.++. |...|.++.|+.+|..+.+++ .|.
T Consensus 123 pvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgea---li~l~-hpd~i~S~sfn~dGs~l~Ttc---kDK 195 (472)
T KOG0303|consen 123 PVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEA---LITLD-HPDMVYSMSFNRDGSLLCTTC---KDK 195 (472)
T ss_pred ceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCce---eeecC-CCCeEEEEEeccCCceeeeec---ccc
Confidence 4567889999999999999 567899999999999999887543 44454 999999999999997666655 899
Q ss_pred eEEEEECCCCceEEEeecC--CcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCcee---ecccCCCCceeEeEE
Q 019847 215 CIKIWNVQKGTCIHGIDAK--AQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKV---GELQSSNSRILDLSQ 289 (335)
Q Consensus 215 ~i~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~---~~~~~~~~~i~~~~~ 289 (335)
.|||||.++++.+..-..+ .....+.|-.++..+.+|. +...+..+.+||..+.+.. .++... +.|.---|
T Consensus 196 kvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGf---sr~seRq~aLwdp~nl~eP~~~~elDtS-nGvl~PFy 271 (472)
T KOG0303|consen 196 KVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGF---SRMSERQIALWDPNNLEEPIALQELDTS-NGVLLPFY 271 (472)
T ss_pred eeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeecc---ccccccceeccCcccccCcceeEEeccC-CceEEeee
Confidence 9999999999998877543 2455677888888666663 2345889999998775543 233333 34555567
Q ss_pred cCCCCEEEEE-eCCCcEEEEecCCCC
Q 019847 290 SPDGLTVATA-GADETIRFWEAFGPS 314 (335)
Q Consensus 290 ~~~~~~l~~~-~~dg~v~iw~~~~~~ 314 (335)
.+|..++..+ -.|+.||.|++....
T Consensus 272 D~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 272 DPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred cCCCCEEEEEecCCcceEEEEecCCC
Confidence 8887776554 579999999998765
No 177
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.89 E-value=9.5e-19 Score=150.34 Aligned_cols=285 Identities=27% Similarity=0.511 Sum_probs=215.1
Q ss_pred cccccceeeeecCC--ceEEEecCCeEEEEEecCCceeeEEeecCCC-CCceEEEE-cCCCC-EEEEEEC-CCcEEEEeC
Q 019847 14 MEDYYSKVIDWGRN--NVLAVALGPVLFLWKWENGKVKKLLQVPGED-DYPTSVSW-SHDAK-TLAVGYM-DSKLQLWDA 87 (335)
Q Consensus 14 ~~~~~~~~~~~~~~--~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~-~~v~~~~~-~~~~~-~l~~~~~-dg~i~iw~~ 87 (335)
.....+..+.+... .++.++.++.+.+|+...+. .....+..+. ..+..+.+ ++++. +++..+. |+.+.+|+.
T Consensus 63 ~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 141 (466)
T COG2319 63 GHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGE-KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDL 141 (466)
T ss_pred eccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCc-eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEe
Confidence 44556667777763 35555579999999998876 1122333322 36777777 88887 5555444 999999999
Q ss_pred CC-ceeEeeecccccceeEeeecCCCCCEEEEeeC-CCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCC-EEEEEeC
Q 019847 88 ET-SKLVRNLEGHHRRVATSSWNHWNGHILTSGSK-DKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGN-LLASGGD 164 (335)
Q Consensus 88 ~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~ 164 (335)
.. ......+..|...|..+.|+| ++..+++++. ++.+++|+..... ....+..|...+.+++|+|++. .+++++.
T Consensus 142 ~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 219 (466)
T COG2319 142 STPGKLIRTLEGHSESVTSLAFSP-DGKLLASGSSLDGTIKLWDLRTGK-PLSTLAGHTDPVSSLAFSPDGGLLIASGSS 219 (466)
T ss_pred cCCCeEEEEEecCcccEEEEEECC-CCCEEEecCCCCCceEEEEcCCCc-eEEeeccCCCceEEEEEcCCcceEEEEecC
Confidence 98 788888999999999999999 7778888885 9999999998633 4566677999999999999988 5555589
Q ss_pred CCeEEEEEccCCCccccee-eccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCce-EEEe-ecCCcEeEEEe
Q 019847 165 DNVVRIWERSKMSSSKSLH-RFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTC-IHGI-DAKAQICGLEW 241 (335)
Q Consensus 165 dg~i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~-~~~~-~~~~~~~~~~~ 241 (335)
|+.|++||... ...+. .+..|.... ...|+|++. ++++++ .|+.+++|+++.... +..+ .+...+.++.|
T Consensus 220 d~~i~~wd~~~---~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~--~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 292 (466)
T COG2319 220 DGTIRLWDLST---GKLLRSTLSGHSDSV-VSSFSPDGS-LLASGS--SDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAF 292 (466)
T ss_pred CCcEEEEECCC---CcEEeeecCCCCcce-eEeECCCCC-EEEEec--CCCcEEEeeecCCCcEEEEEecCCccEEEEEE
Confidence 99999998763 33444 567777765 448999984 444555 899999999987664 4444 33578999999
Q ss_pred CCCCceeeeeeeeeeecCCCeEEEEECCCCceeeccc--CCCCceeEeEEcCCCCEEEEE-eCCCcEEEEecCCCC
Q 019847 242 NRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQ--SSNSRILDLSQSPDGLTVATA-GADETIRFWEAFGPS 314 (335)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~-~~dg~v~iw~~~~~~ 314 (335)
.|++..++++ +.|+.+.+|+..+........ .|...+..+.+.+++..++.+ ..|+.+.+|+.....
T Consensus 293 ~~~~~~~~~~------~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 293 SPDGKLLASG------SSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred CCCCCEEEEe------eCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence 9988888775 456889999998887776665 787789999994332456555 688999999998877
No 178
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.88 E-value=4.2e-21 Score=146.17 Aligned_cols=228 Identities=18% Similarity=0.309 Sum_probs=170.8
Q ss_pred ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCC-CEEEEEECCCcEEEEeCCCceeEeee---cccccce
Q 019847 28 NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDA-KTLAVGYMDSKLQLWDAETSKLVRNL---EGHHRRV 103 (335)
Q Consensus 28 ~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~---~~~~~~v 103 (335)
.+++++.-|.|+|.|+.+++... .+.+|...|+.+.+.|+. +++++++.|..|++|++++..++..+ .+|...|
T Consensus 107 ~la~~G~~GvIrVid~~~~~~~~--~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeV 184 (385)
T KOG1034|consen 107 FLAAGGYLGVIRVIDVVSGQCSK--NYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEV 184 (385)
T ss_pred eEEeecceeEEEEEecchhhhcc--ceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcE
Confidence 35566688999999999998755 455899999999999954 78899999999999999999998876 5799999
Q ss_pred eEeeecCCCCCEEEEeeCCCcEEEEecccCCe---------------------------eeEEeecCCCCEEEEEeecCC
Q 019847 104 ATSSWNHWNGHILTSGSKDKSIINHDVRVSNN---------------------------VTSCIKAHSGEVCGLKWSNEG 156 (335)
Q Consensus 104 ~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~---------------------------~~~~~~~~~~~i~~~~~~~~~ 156 (335)
.++.|++ ++..|++++.|.++++|++...+- .......|...|.|+.|- |
T Consensus 185 LSvD~~~-~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--g 261 (385)
T KOG1034|consen 185 LSVDFSL-DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--G 261 (385)
T ss_pred EEEEEcC-CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--h
Confidence 9999999 999999999999999999973210 001223466666677765 4
Q ss_pred CEEEEEeCCCeEEEEEccCCCc-----------ccceeeccCCCCCeeEE--EecCCCCcEEEEecCCCCCeEEEEECCC
Q 019847 157 NLLASGGDDNVVRIWERSKMSS-----------SKSLHRFTDHCGGVKAL--AWSPHQVNVLATGGGREDGCIKIWNVQK 223 (335)
Q Consensus 157 ~~l~~~~~dg~i~iwd~~~~~~-----------~~~~~~~~~~~~~v~~~--~~~~~~~~~~~~~~g~~d~~i~i~d~~~ 223 (335)
+++++=+-++.|..|.....+. ...+..+.-....|.-+ +|.|-++ +++.+. ..|.+.+||++.
T Consensus 262 d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~-~la~gn--q~g~v~vwdL~~ 338 (385)
T KOG1034|consen 262 DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQK-MLALGN--QSGKVYVWDLDN 338 (385)
T ss_pred hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHH-HHhhcc--CCCcEEEEECCC
Confidence 6899988899999998621111 11123333334445544 4456564 556655 899999999998
Q ss_pred CceEE--Eee---cCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECC
Q 019847 224 GTCIH--GID---AKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYP 269 (335)
Q Consensus 224 ~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~ 269 (335)
.++.. ++. ....|...+|+.++..++.. .+|+.|.-||..
T Consensus 339 ~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~v------cdd~~Vwrwdrv 383 (385)
T KOG1034|consen 339 NEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLV------CDDGTVWRWDRV 383 (385)
T ss_pred CCCccCceEEeccccceeeeeeecccCcEEEEE------eCCCcEEEEEee
Confidence 76632 222 34578999999999998876 679999999853
No 179
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.2e-19 Score=154.95 Aligned_cols=287 Identities=15% Similarity=0.212 Sum_probs=209.0
Q ss_pred ceeeeecC-CceEEEecCCeEEEEEecCCceeeEEe---ecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCC----c
Q 019847 19 SKVIDWGR-NNVLAVALGPVLFLWKWENGKVKKLLQ---VPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAET----S 90 (335)
Q Consensus 19 ~~~~~~~~-~~~~~~~~~~~i~vw~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~----~ 90 (335)
..++..++ +.+.....+..+.+|+..++. ..... -..|...+++.+++|+++++|+|..||.|.+|.--. .
T Consensus 163 ~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~-~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~ 241 (792)
T KOG1963|consen 163 PKSIVDNNSGEFKGIVHMCKIHIYFVPKHT-KHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDS 241 (792)
T ss_pred CccEEEcCCceEEEEEEeeeEEEEEecccc-eeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccccc
Confidence 45666666 456667788899999988755 11111 134777799999999999999999999999996432 1
Q ss_pred eeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEE
Q 019847 91 KLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRI 170 (335)
Q Consensus 91 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 170 (335)
.....+.-|..+|.+++|++ +|.+|++|+..|.+.+|.+.+++ .+.+..-.++|..+.++||+.+.+....|..|.+
T Consensus 242 ~t~t~lHWH~~~V~~L~fS~-~G~~LlSGG~E~VLv~Wq~~T~~--kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~l 318 (792)
T KOG1963|consen 242 ETCTLLHWHHDEVNSLSFSS-DGAYLLSGGREGVLVLWQLETGK--KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHL 318 (792)
T ss_pred ccceEEEecccccceeEEec-CCceEeecccceEEEEEeecCCC--cccccccCCeeEEEEEcCCCCeEEEEecCceEEE
Confidence 23445667889999999999 99999999999999999999877 5556677889999999999999999999999999
Q ss_pred EEccCCCcccceeeccCC--------CCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec----------
Q 019847 171 WERSKMSSSKSLHRFTDH--------CGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA---------- 232 (335)
Q Consensus 171 wd~~~~~~~~~~~~~~~~--------~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~---------- 232 (335)
....+......+..+... .+-.+.++++|.-..++..+ ..|.|.+||+.+.+.+..+..
T Consensus 319 i~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~---~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~ 395 (792)
T KOG1963|consen 319 IKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNG---HPGHVQFYDLYTDSTIYKLQVCDENYSDGDV 395 (792)
T ss_pred EeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecC---CCceEEEEeccccceeeeEEEEeecccCCcc
Confidence 887554443333333322 34467788999544444444 799999999987766655431
Q ss_pred --CCcEeEEEeCCCCceeeeee-----------------------------------------------------eeeee
Q 019847 233 --KAQICGLEWNRHHKEILSGH-----------------------------------------------------GFSAS 257 (335)
Q Consensus 233 --~~~~~~~~~~~~~~~~~~~~-----------------------------------------------------~~~~~ 257 (335)
.-.++.++.+..|.++++.- .++++
T Consensus 396 n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta 475 (792)
T KOG1963|consen 396 NIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTA 475 (792)
T ss_pred eeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEe
Confidence 11344555555555555430 14466
Q ss_pred cCCCeEEEEECCCCcee----------ecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCC
Q 019847 258 GDGNKLCLWKYPNMTKV----------GELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGP 313 (335)
Q Consensus 258 ~~~~~i~i~d~~~~~~~----------~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~ 313 (335)
+.||.+++|-+...+.+ ..-.-|..++++++|+.||.. ++.+.|+.|.+||..+.
T Consensus 476 ~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGsl-la~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 476 SVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSL-LAVSFDDTITIWDYDTK 540 (792)
T ss_pred ccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcE-EEEecCCEEEEecCCCh
Confidence 78999999988432211 111136788999999999965 45667889999999985
No 180
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.88 E-value=5e-20 Score=139.91 Aligned_cols=232 Identities=16% Similarity=0.258 Sum_probs=178.7
Q ss_pred ccceeeeecCC-ceEEE-ecCCeEEEEEecCCc-eeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeC-CCc--
Q 019847 17 YYSKVIDWGRN-NVLAV-ALGPVLFLWKWENGK-VKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDA-ETS-- 90 (335)
Q Consensus 17 ~~~~~~~~~~~-~~~~~-~~~~~i~vw~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~-~~~-- 90 (335)
.+++|.+|+.+ ..++. .....|.||.....+ .....++..|...|++++|+|..+.|++++.|..-++|.. ..+
T Consensus 11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~W 90 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTW 90 (361)
T ss_pred CceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCee
Confidence 46889999986 34444 466799999998887 6777788899999999999999999999999999999998 333
Q ss_pred eeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCee---eEEeecCCCCEEEEEeecCCCEEEEEeCCCe
Q 019847 91 KLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNV---TSCIKAHSGEVCGLKWSNEGNLLASGGDDNV 167 (335)
Q Consensus 91 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 167 (335)
++.-.+..++...+++.|+| .++.|++|+....|.+|-++..+.- ..+...+.+.|+++.|+|++-+|++|+.|+.
T Consensus 91 kptlvLlRiNrAAt~V~WsP-~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k 169 (361)
T KOG1523|consen 91 KPTLVLLRINRAATCVKWSP-KENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGK 169 (361)
T ss_pred ccceeEEEeccceeeEeecC-cCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcc
Confidence 34445667899999999999 9999999999999999988754421 2234467889999999999999999999999
Q ss_pred EEEEEcc-----CCC----------cccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCc-eEEEee
Q 019847 168 VRIWERS-----KMS----------SSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGT-CIHGID 231 (335)
Q Consensus 168 i~iwd~~-----~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~-~~~~~~ 231 (335)
.++|..- +.. -+..+..+....+.+..+.|+|+|..+...+ .|..+.+-|..... .+....
T Consensus 170 ~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~---Hds~v~~~da~~p~~~v~~~~ 246 (361)
T KOG1523|consen 170 CRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVG---HDSTVSFVDAAGPSERVQSVA 246 (361)
T ss_pred eeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEec---CCCceEEeecCCCchhccchh
Confidence 9998631 111 0112333334667899999999998877776 79999999987664 222222
Q ss_pred -cCCcEeEEEeCCCCceeeeee
Q 019847 232 -AKAQICGLEWNRHHKEILSGH 252 (335)
Q Consensus 232 -~~~~~~~~~~~~~~~~~~~~~ 252 (335)
..-+..++.|-.+...+..|.
T Consensus 247 ~~~lP~ls~~~ise~~vv~ag~ 268 (361)
T KOG1523|consen 247 TAQLPLLSVSWISENSVVAAGY 268 (361)
T ss_pred hccCCceeeEeecCCceeecCC
Confidence 235677777777766666654
No 181
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=4.8e-20 Score=134.95 Aligned_cols=235 Identities=14% Similarity=0.194 Sum_probs=172.2
Q ss_pred CceEEEEcCCCCEEEEEECCCcEEEEeCCC---------c-eeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEe
Q 019847 60 YPTSVSWSHDAKTLAVGYMDSKLQLWDAET---------S-KLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHD 129 (335)
Q Consensus 60 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~---------~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d 129 (335)
.|..-+++|.+++|++|..+|.|.+..+.. + ..+-..++|.+++..++|. ..+|++|+. |.|+-|.
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~---d~~Lls~gd-G~V~gw~ 87 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH---DDFLLSGGD-GLVYGWE 87 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee---hhheeeccC-ceEEEee
Confidence 466778999999999999999999998753 1 2334457899999999995 567777664 9999998
Q ss_pred cccCCee------e-EEeecC-----CCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEe
Q 019847 130 VRVSNNV------T-SCIKAH-----SGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAW 197 (335)
Q Consensus 130 ~~~~~~~------~-~~~~~~-----~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 197 (335)
.+...+- . .....| -..|+++...|..+-++.++.|+.++-||+++ ++....+.+|.+.+.++.-
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~---G~i~r~~rGHtDYvH~vv~ 164 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLED---GRIQREYRGHTDYVHSVVG 164 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecC---CEEEEEEcCCcceeeeeee
Confidence 7643321 0 011112 24688999999777777777899999999887 4567788999999999988
Q ss_pred cCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeE---------EEeCCCCceeeeeeeeeeecCCCeEEEEEC
Q 019847 198 SPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICG---------LEWNRHHKEILSGHGFSASGDGNKLCLWKY 268 (335)
Q Consensus 198 ~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~ 268 (335)
-.....+++ |+ +||++|+||.++++.+..++....-.. .+..-+...+++ +....+.+|.+
T Consensus 165 R~~~~qils-G~--EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvC-------GgGp~lslwhL 234 (325)
T KOG0649|consen 165 RNANGQILS-GA--EDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVC-------GGGPKLSLWHL 234 (325)
T ss_pred cccCcceee-cC--CCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEe-------cCCCceeEEec
Confidence 554545555 33 999999999999999988864322111 223334445554 45788999999
Q ss_pred CCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCC
Q 019847 269 PNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPS 314 (335)
Q Consensus 269 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~ 314 (335)
+..++...+. -..++..+.|..| .++++++...|.-|.+.+--
T Consensus 235 rsse~t~vfp-ipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~Gvl 277 (325)
T KOG0649|consen 235 RSSESTCVFP-IPARVHLVDFVDD--CVLIGGEGNHVQSYTLNGVL 277 (325)
T ss_pred cCCCceEEEe-cccceeEeeeecc--eEEEeccccceeeeeeccEE
Confidence 9988877664 2345777888665 67888888889999887643
No 182
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.87 E-value=1e-18 Score=135.26 Aligned_cols=241 Identities=13% Similarity=0.199 Sum_probs=183.6
Q ss_pred CCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCC--CcEEEEecccCCe
Q 019847 58 DDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKD--KSIINHDVRVSNN 135 (335)
Q Consensus 58 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~i~~~d~~~~~~ 135 (335)
...+..+.|+.+...|..|+.|| .++|+.+..............|..+-|+ ..+++..+.+ ..+++++.+....
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFS---SSLvaiV~~~qpr~Lkv~~~Kk~~~ 80 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFS---SSLVAIVSIKQPRKLKVVHFKKKTT 80 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecc---cceeEEEecCCCceEEEEEcccCce
Confidence 34567777999999999999997 7888877655433333344567777774 4566655544 3588999875554
Q ss_pred eeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCe
Q 019847 136 VTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGC 215 (335)
Q Consensus 136 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~ 215 (335)
+... ....+|.++.++.+ .|+++-.+ .|+|||+++......+.....+...+.++.+++.+.++..-++ ...|.
T Consensus 81 ICe~--~fpt~IL~VrmNr~--RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s-~t~Gd 154 (391)
T KOG2110|consen 81 ICEI--FFPTSILAVRMNRK--RLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGS-TTSGD 154 (391)
T ss_pred EEEE--ecCCceEEEEEccc--eEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCC-CCCce
Confidence 3333 35678999998754 56666654 4999999997766666666566667777777777766666553 45799
Q ss_pred EEEEECCCCceEEEeec-CCcEeEEEeCCCCceeeeeeeeeeecCCC-eEEEEECCCCceeecccCCC--CceeEeEEcC
Q 019847 216 IKIWNVQKGTCIHGIDA-KAQICGLEWNRHHKEILSGHGFSASGDGN-KLCLWKYPNMTKVGELQSSN--SRILDLSQSP 291 (335)
Q Consensus 216 i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~i~d~~~~~~~~~~~~~~--~~i~~~~~~~ 291 (335)
|.+||..+-+.+..+.. .+++.+++|+++|.+++++ ++.| .||||.+.+++.+.+++... ..|.+++|+|
T Consensus 155 V~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATA------SeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ 228 (391)
T KOG2110|consen 155 VVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATA------SEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSP 228 (391)
T ss_pred EEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEe------ccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECC
Confidence 99999999999988875 5689999999999999988 4454 58999999999999987543 3588999999
Q ss_pred CCCEEEEEeCCCcEEEEecCCCC
Q 019847 292 DGLTVATAGADETIRFWEAFGPS 314 (335)
Q Consensus 292 ~~~~l~~~~~dg~v~iw~~~~~~ 314 (335)
++++|++.+..++|++|+++...
T Consensus 229 ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 229 DSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred CCCeEEEecCCCeEEEEEecccc
Confidence 99999999999999999998754
No 183
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.87 E-value=2.4e-20 Score=151.02 Aligned_cols=258 Identities=20% Similarity=0.344 Sum_probs=187.1
Q ss_pred ceeeeecCC-ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcC-------CCCEEEEEECCCcEEEEeCCCc
Q 019847 19 SKVIDWGRN-NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSH-------DAKTLAVGYMDSKLQLWDAETS 90 (335)
Q Consensus 19 ~~~~~~~~~-~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~-------~~~~l~~~~~dg~i~iw~~~~~ 90 (335)
+.|+.|..+ .++.++.|..+.+|+--+........++.. .-.+.+-.-+ ....++.++.||.+.+.+ +.+
T Consensus 17 vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~d-f~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~-k~~ 94 (737)
T KOG1524|consen 17 VCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDD-FVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN-KSA 94 (737)
T ss_pred EEeecccccceEEEeccCceEEEeecccchhhhhhhCCcc-cCCccccccccccCCCCCcceEEEEcCCceEEEec-ccc
Confidence 357888874 688888888888887544433333333221 1111111111 235788889999999997 467
Q ss_pred eeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEE
Q 019847 91 KLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRI 170 (335)
Q Consensus 91 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 170 (335)
+..+.+..|.+.+.+-.|+| +|.-|+++++||.|++|.-. +-+...+.....+|.|++|.|+.+-++.+. .+.+.|
T Consensus 95 rVE~sv~AH~~A~~~gRW~~-dGtgLlt~GEDG~iKiWSrs--GMLRStl~Q~~~~v~c~~W~p~S~~vl~c~-g~h~~I 170 (737)
T KOG1524|consen 95 RVERSISAHAAAISSGRWSP-DGAGLLTAGEDGVIKIWSRS--GMLRSTVVQNEESIRCARWAPNSNSIVFCQ-GGHISI 170 (737)
T ss_pred hhhhhhhhhhhhhhhcccCC-CCceeeeecCCceEEEEecc--chHHHHHhhcCceeEEEEECCCCCceEEec-CCeEEE
Confidence 88888999999999999999 99999999999999999853 223444556778999999999877666654 456666
Q ss_pred EEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeee
Q 019847 171 WERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILS 250 (335)
Q Consensus 171 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (335)
=.+.. ...+...+.|.+-|.++.|++.+ .++++++ +|-..++||.........-.+..+|++++|.|+ +.++.
T Consensus 171 KpL~~---n~k~i~WkAHDGiiL~~~W~~~s-~lI~sgG--ED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~~~~v 243 (737)
T KOG1524|consen 171 KPLAA---NSKIIRWRAHDGLVLSLSWSTQS-NIIASGG--EDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE-KDYLL 243 (737)
T ss_pred eeccc---ccceeEEeccCcEEEEeecCccc-cceeecC--CceeEEeecccCcccccCChhccceeeeeeccc-cceee
Confidence 55443 23355678899999999999998 4788877 999999999764444444456779999999999 44444
Q ss_pred eeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEE
Q 019847 251 GHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRF 307 (335)
Q Consensus 251 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i 307 (335)
+. -+..++ -+...+.|..++||+||..++.|+..|.+.+
T Consensus 244 ~S-------~nt~R~-----------~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 244 WS-------YNTARF-----------SSPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred ee-------eeeeee-----------cCCCccceEEEEEcCCCceeeccccCceEEE
Confidence 32 233331 1234567999999999999999999998765
No 184
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=4.2e-21 Score=155.94 Aligned_cols=253 Identities=16% Similarity=0.191 Sum_probs=183.2
Q ss_pred ccceeeeecC--CceEEEecCCeEEEEEec------CCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCC
Q 019847 17 YYSKVIDWGR--NNVLAVALGPVLFLWKWE------NGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAE 88 (335)
Q Consensus 17 ~~~~~~~~~~--~~~~~~~~~~~i~vw~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~ 88 (335)
-.++.+.+++ ..+++++.++.+.+|+++ ....++++++.+|..+|.|+++.++++.+.+|+.||+|+.|++.
T Consensus 295 d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p 374 (577)
T KOG0642|consen 295 DCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLP 374 (577)
T ss_pred hhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccC
Confidence 3455566665 578899999999999993 24567888999999999999999999999999999999999764
Q ss_pred Cc----------eeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCC-C
Q 019847 89 TS----------KLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEG-N 157 (335)
Q Consensus 89 ~~----------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~ 157 (335)
.. .....+.+|.+.++.+++++ ....|++++.||+++.|+......+........+.-.++.+-... .
T Consensus 375 ~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~-~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a 453 (577)
T KOG0642|consen 375 PNQDPDDSYDPSVLSGTLLGHTDAVWLLALSS-TKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPA 453 (577)
T ss_pred CCCCcccccCcchhccceeccccceeeeeecc-cccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhH
Confidence 21 23456789999999999999 888899999999999999875544111111112223444443321 1
Q ss_pred EEEEEeCCCeEEEEEccCCCcccceeeccC-------CCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEe
Q 019847 158 LLASGGDDNVVRIWERSKMSSSKSLHRFTD-------HCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGI 230 (335)
Q Consensus 158 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~ 230 (335)
+.++ +.....+++........+..+.. ....+..+.++|.++..+. +. .|+.|+++|..+++++...
T Consensus 454 ~~~~---s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~-~h--ed~~Ir~~dn~~~~~l~s~ 527 (577)
T KOG0642|consen 454 HSLA---SFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFT-AH--EDRSIRFFDNKTGKILHSM 527 (577)
T ss_pred hhhh---hcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEe-cc--cCCceecccccccccchhe
Confidence 2222 33344444333332333333221 1234778889999865554 43 8999999999999998877
Q ss_pred ec-CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCC
Q 019847 231 DA-KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNS 282 (335)
Q Consensus 231 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~ 282 (335)
.. ...++++++.|+|.+++++ +.|+.+++|.+.....+.....|..
T Consensus 528 ~a~~~svtslai~~ng~~l~s~------s~d~sv~l~kld~k~~~~es~~~r~ 574 (577)
T KOG0642|consen 528 VAHKDSVTSLAIDPNGPYLMSG------SHDGSVRLWKLDVKTCVLESTAHRK 574 (577)
T ss_pred eeccceecceeecCCCceEEee------cCCceeehhhccchheeeccccccc
Confidence 64 5679999999999999998 7799999999988888777666643
No 185
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.87 E-value=1.5e-19 Score=153.96 Aligned_cols=233 Identities=13% Similarity=0.093 Sum_probs=163.6
Q ss_pred CCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECC---CcEEEEeCCCcee--EeeecccccceeEeeec
Q 019847 35 GPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMD---SKLQLWDAETSKL--VRNLEGHHRRVATSSWN 109 (335)
Q Consensus 35 ~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~--~~~~~~~~~~v~~~~~~ 109 (335)
+..|.+||.+.... ..+..|...+...+|+|||++|+..+.+ ..|++||+.+++. +..+. +....++|+
T Consensus 183 ~~~i~i~d~dg~~~---~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~---g~~~~~~wS 256 (429)
T PRK01742 183 PYEVRVADYDGFNQ---FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFR---GHNGAPAFS 256 (429)
T ss_pred eEEEEEECCCCCCc---eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCC---CccCceeEC
Confidence 36899999876653 2344677789999999999999987653 3699999988754 33333 334578999
Q ss_pred CCCCCEEEEe-eCCCcEEEE--ecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEe-CCCeEEEEEccCCCcccceeec
Q 019847 110 HWNGHILTSG-SKDKSIINH--DVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGG-DDNVVRIWERSKMSSSKSLHRF 185 (335)
Q Consensus 110 ~~~~~~l~~~-~~dg~i~~~--d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~ 185 (335)
| +++.|+.+ +.+|.+.+| |+.++. ...+..+...+....|+|||+.|+.++ .+|...+|+++...... ..+
T Consensus 257 P-DG~~La~~~~~~g~~~Iy~~d~~~~~--~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~--~~l 331 (429)
T PRK01742 257 P-DGSRLAFASSKDGVLNIYVMGANGGT--PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA--SLV 331 (429)
T ss_pred C-CCCEEEEEEecCCcEEEEEEECCCCC--eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe--EEe
Confidence 9 88877765 468876666 544333 344556677788999999999877655 57888888876432211 222
Q ss_pred cCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEE
Q 019847 186 TDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCL 265 (335)
Q Consensus 186 ~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i 265 (335)
.+.. ....|+|+++.+++.+ .+ .+.+||+.+++...... ......+.|+|+|+.++.+ +.++...+
T Consensus 332 -~~~~--~~~~~SpDG~~ia~~~---~~-~i~~~Dl~~g~~~~lt~-~~~~~~~~~sPdG~~i~~~------s~~g~~~~ 397 (429)
T PRK01742 332 -GGRG--YSAQISADGKTLVMIN---GD-NVVKQDLTSGSTEVLSS-TFLDESPSISPNGIMIIYS------STQGLGKV 397 (429)
T ss_pred -cCCC--CCccCCCCCCEEEEEc---CC-CEEEEECCCCCeEEecC-CCCCCCceECCCCCEEEEE------EcCCCceE
Confidence 2333 4578999998776664 34 46669999887643322 2234567899999999877 44676777
Q ss_pred EEC--CCCceeecccCCCCceeEeEEcCC
Q 019847 266 WKY--PNMTKVGELQSSNSRILDLSQSPD 292 (335)
Q Consensus 266 ~d~--~~~~~~~~~~~~~~~i~~~~~~~~ 292 (335)
|++ .+++....+..|.+.+...+|+|-
T Consensus 398 l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 398 LQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred EEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 764 357778888888888999999985
No 186
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=7.4e-20 Score=140.11 Aligned_cols=199 Identities=19% Similarity=0.314 Sum_probs=159.0
Q ss_pred CEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCC-CCCEEEEeeCCCcEEEEecccCCeeeEE-eecCC-CCE
Q 019847 71 KTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHW-NGHILTSGSKDKSIINHDVRVSNNVTSC-IKAHS-GEV 147 (335)
Q Consensus 71 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~-~~~~~-~~i 147 (335)
..+|++..+|.|++||..+++.+..+++++..+..+.|... .++.+.+|+.||+|++||++...+..+. ...++ .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 56899999999999999999999999999999999999764 5788999999999999999987654433 33444 467
Q ss_pred EEEEeecCCCEEEEEeC----CCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCC
Q 019847 148 CGLKWSNEGNLLASGGD----DNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQK 223 (335)
Q Consensus 148 ~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~ 223 (335)
.+++.+-+++.+++|.. +-.|.+||+|..+.. .-.-...|...|+++.|+|..+.++++|+ .||.+.+||+..
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~-l~~~~eSH~DDVT~lrFHP~~pnlLlSGS--vDGLvnlfD~~~ 197 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQL-LRQLNESHNDDVTQLRFHPSDPNLLLSGS--VDGLVNLFDTKK 197 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccch-hhhhhhhccCcceeEEecCCCCCeEEeec--ccceEEeeecCC
Confidence 77887778888888863 567999999975431 22334679999999999999999999988 999999999976
Q ss_pred Cc----eEEEeecCCcEeEEEeCCCC-ceeeeeeeeeeecCCCeEEEEECCCCceeeccc
Q 019847 224 GT----CIHGIDAKAQICGLEWNRHH-KEILSGHGFSASGDGNKLCLWKYPNMTKVGELQ 278 (335)
Q Consensus 224 ~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~ 278 (335)
.. ++..+.....|..+.|..++ +.+.+- +......+|+++.+.....+.
T Consensus 198 d~EeDaL~~viN~~sSI~~igw~~~~ykrI~cl------TH~Etf~~~ele~~~~~~~~~ 251 (376)
T KOG1188|consen 198 DNEEDALLHVINHGSSIHLIGWLSKKYKRIMCL------THMETFAIYELEDGSEETWLE 251 (376)
T ss_pred CcchhhHHHhhcccceeeeeeeecCCcceEEEE------EccCceeEEEccCCChhhccc
Confidence 42 35566677789999999888 223332 568999999999887655443
No 187
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.86 E-value=2e-21 Score=164.71 Aligned_cols=252 Identities=17% Similarity=0.319 Sum_probs=193.2
Q ss_pred eecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEeccc
Q 019847 53 QVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRV 132 (335)
Q Consensus 53 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 132 (335)
.+.+|.+.|+|+.|...|.++++|+.|..++||..+++.++....+|.+.|+.++.+. +..++++++.|..|++|.+..
T Consensus 185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~-~n~~iaaaS~D~vIrvWrl~~ 263 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSS-NNTMIAAASNDKVIRVWRLPD 263 (1113)
T ss_pred HHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccch-hhhhhhhcccCceEEEEecCC
Confidence 3458999999999999999999999999999999999999999999999999999988 888999999999999999996
Q ss_pred CCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCccc---cee------------------------ec
Q 019847 133 SNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSK---SLH------------------------RF 185 (335)
Q Consensus 133 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~---~~~------------------------~~ 185 (335)
+.. +..+.+|.+.|++++|+|-. +.+.||++++||.+-..... +.. ..
T Consensus 264 ~~p-vsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ 338 (1113)
T KOG0644|consen 264 GAP-VSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDG 338 (1113)
T ss_pred Cch-HHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCc
Confidence 654 77789999999999999954 67889999999987110000 000 00
Q ss_pred cCCCCCeeEEEecCCCCcEEEEec---------CCCCCeEEEEECCCCceEEEeecC-CcEeEEEeCCCCceeeeeeeee
Q 019847 186 TDHCGGVKALAWSPHQVNVLATGG---------GREDGCIKIWNVQKGTCIHGIDAK-AQICGLEWNRHHKEILSGHGFS 255 (335)
Q Consensus 186 ~~~~~~v~~~~~~~~~~~~~~~~~---------g~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 255 (335)
......+.+++|.... .++++.+ ...+..+.+|++.+|...+.+..+ ..+..+.++|.+..++..
T Consensus 339 ea~n~e~~~l~~~~~~-lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~ms---- 413 (1113)
T KOG0644|consen 339 EARNHEFEQLAWRSNL-LIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMS---- 413 (1113)
T ss_pred ccccchhhHhhhhccc-eEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhh----
Confidence 0001112223333222 2222222 114567889999999888777654 478889999998887654
Q ss_pred eecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCC
Q 019847 256 ASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGD 316 (335)
Q Consensus 256 ~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~ 316 (335)
++.||...|||+-.+.+++......+.+..-+||+||..++....-|.++|......+.+
T Consensus 414 -ag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s~ 473 (1113)
T KOG0644|consen 414 -AGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKSQ 473 (1113)
T ss_pred -ccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCccc
Confidence 367999999999999887766544566788899999999998888899999877665443
No 188
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.86 E-value=1.6e-19 Score=141.31 Aligned_cols=246 Identities=19% Similarity=0.283 Sum_probs=177.1
Q ss_pred ccceeeeecCC---ceEEEecCCeEEEEEecCCc-------eeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEe
Q 019847 17 YYSKVIDWGRN---NVLAVALGPVLFLWKWENGK-------VKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWD 86 (335)
Q Consensus 17 ~~~~~~~~~~~---~~~~~~~~~~i~vw~~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~ 86 (335)
.++..+.+.++ .+++++.|..|++|.++.++ ....-.+..|...|+++.|+|+|+.||+|+.+|.|.+|.
T Consensus 14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk 93 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWK 93 (434)
T ss_pred CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEE
Confidence 34556667663 57778899999999987543 333445678999999999999999999999999999997
Q ss_pred CC--------C--------ceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEE
Q 019847 87 AE--------T--------SKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGL 150 (335)
Q Consensus 87 ~~--------~--------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~ 150 (335)
.. + ....+.+.+|...|..++|+| ++..+++++.|+.+++||+..+. +...+..|...+..+
T Consensus 94 ~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~G~-l~~~~~dh~~yvqgv 171 (434)
T KOG1009|consen 94 QGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHAGQ-LLAILDDHEHYVQGV 171 (434)
T ss_pred ecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEeccce-eEeecccccccccee
Confidence 65 2 123455678999999999999 99999999999999999998655 577788899999999
Q ss_pred EeecCCCEEEEEeCCCeEEEEEccCCCcccc------------------eeeccC--CCCCeeEEEecCCCCc-------
Q 019847 151 KWSNEGNLLASGGDDNVVRIWERSKMSSSKS------------------LHRFTD--HCGGVKALAWSPHQVN------- 203 (335)
Q Consensus 151 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~------------------~~~~~~--~~~~v~~~~~~~~~~~------- 203 (335)
+|.|-++++++-+.|...+.+.+........ .+.+.. ...-...++|+|+|..
T Consensus 172 awDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~ 251 (434)
T KOG1009|consen 172 AWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGL 251 (434)
T ss_pred ecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccce
Confidence 9999888998888887665555432111000 000000 0011222333443321
Q ss_pred --------------------------------------------------------------EEEEecCCCCCeEEEEEC
Q 019847 204 --------------------------------------------------------------VLATGGGREDGCIKIWNV 221 (335)
Q Consensus 204 --------------------------------------------------------------~~~~~~g~~d~~i~i~d~ 221 (335)
+++.+ ..+.+++||.
T Consensus 252 ~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiA---t~~svyvydt 328 (434)
T KOG1009|consen 252 FKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIA---TKNSVYVYDT 328 (434)
T ss_pred eeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEe---ecceEEEecc
Confidence 22333 3567888888
Q ss_pred CCCceEEEeec--CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCce
Q 019847 222 QKGTCIHGIDA--KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTK 273 (335)
Q Consensus 222 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~ 273 (335)
++-.++..... -..++.++|+++|..++.. +.||-..+..++..++
T Consensus 329 q~~~P~~~v~nihy~~iTDiaws~dg~~l~vS------S~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 329 QTLEPLAVVDNIHYSAITDIAWSDDGSVLLVS------STDGFCSLVTFEPWEL 376 (434)
T ss_pred ccccceEEEeeeeeeeecceeecCCCcEEEEe------ccCCceEEEEEcchhc
Confidence 88777766643 4579999999999999877 6788888777665544
No 189
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=1.9e-18 Score=126.65 Aligned_cols=270 Identities=14% Similarity=0.195 Sum_probs=185.2
Q ss_pred eeeeecCCceEEEecCCeEEEEEecCC--------ceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCce
Q 019847 20 KVIDWGRNNVLAVALGPVLFLWKWENG--------KVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSK 91 (335)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~i~vw~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 91 (335)
.+++.+...++++..+|.|.+..+++- ...++...++|..+|+.++|. ..+|++|+ ||.|+=|..+...
T Consensus 16 qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~ 92 (325)
T KOG0649|consen 16 QAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEE 92 (325)
T ss_pred HhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeeehhhh
Confidence 334444456777789999999998631 123455668999999999997 44666665 6999999865432
Q ss_pred e------Eeee--ccc-----ccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCE
Q 019847 92 L------VRNL--EGH-----HRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNL 158 (335)
Q Consensus 92 ~------~~~~--~~~-----~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 158 (335)
. +.+. ..+ --.|+++...| ..+-++.++.|+.++-||+++++ +.+.+++|...+.++.--.....
T Consensus 93 es~~~K~lwe~~~P~~~~~~evPeINam~ldP-~enSi~~AgGD~~~y~~dlE~G~-i~r~~rGHtDYvH~vv~R~~~~q 170 (325)
T KOG0649|consen 93 ESLATKRLWEVKIPMQVDAVEVPEINAMWLDP-SENSILFAGGDGVIYQVDLEDGR-IQREYRGHTDYVHSVVGRNANGQ 170 (325)
T ss_pred hhccchhhhhhcCccccCcccCCccceeEecc-CCCcEEEecCCeEEEEEEecCCE-EEEEEcCCcceeeeeeecccCcc
Confidence 2 1111 111 13688888898 55555555589999999999655 67889999999999998555567
Q ss_pred EEEEeCCCeEEEEEccCCCcccceeecc------CCC-CCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEee
Q 019847 159 LASGGDDNVVRIWERSKMSSSKSLHRFT------DHC-GGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGID 231 (335)
Q Consensus 159 l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~~~-~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~ 231 (335)
+++|++||++|+||+++.+..+.+...+ .|. ..|.+++.+.+ .+++|+ ...+.+|.++..++...++
T Consensus 171 ilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~ed---WlvCGg---Gp~lslwhLrsse~t~vfp 244 (325)
T KOG0649|consen 171 ILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNED---WLVCGG---GPKLSLWHLRSSESTCVFP 244 (325)
T ss_pred eeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCc---eEEecC---CCceeEEeccCCCceEEEe
Confidence 9999999999999998865544433322 222 23566665543 555553 6789999999999999999
Q ss_pred cCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCC-CEEEEEeCCCcEEEEe
Q 019847 232 AKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDG-LTVATAGADETIRFWE 309 (335)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~v~iw~ 309 (335)
.+.++..+.|..+- ++++ ++.+.+.-|.+. +..-...+......++..|+... +++-.++....+.|+.
T Consensus 245 ipa~v~~v~F~~d~--vl~~------G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 245 IPARVHLVDFVDDC--VLIG------GEGNHVQSYTLN-GVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHILK 314 (325)
T ss_pred cccceeEeeeecce--EEEe------ccccceeeeeec-cEEEEeccCCccceeeecccCCceEEEEecccceeeeeee
Confidence 99999999886553 3333 567888888864 33333444333445666665543 4455566667777663
No 190
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.85 E-value=6.3e-19 Score=133.99 Aligned_cols=226 Identities=15% Similarity=0.254 Sum_probs=176.1
Q ss_pred CCCceEEEEcCCCCEEEEEECCCcEEEEeCCCc---eeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCC
Q 019847 58 DDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETS---KLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSN 134 (335)
Q Consensus 58 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~ 134 (335)
..+|+|.+|++|+..+|++..+..|.||..... +...+++.|...|+.++|+| ..+.|++++.|..-++|....+.
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap-~snrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAP-KSNRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecC-CCCceeEccCCCCccccccCCCC
Confidence 568999999999999999999999999998755 46778899999999999999 99999999999999999985443
Q ss_pred e--eeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCccc-ceeeccCCCCCeeEEEecCCCCcEEEEecCC
Q 019847 135 N--VTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSK-SLHRFTDHCGGVKALAWSPHQVNVLATGGGR 211 (335)
Q Consensus 135 ~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~ 211 (335)
. ..-.+..+....+++.|+|.++.||+|+.-..|.+|-++..+..- ..+.-+.+.+.|.++.|+|++ -++++|+
T Consensus 89 ~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnn-VLlaaGs-- 165 (361)
T KOG1523|consen 89 TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNN-VLLAAGS-- 165 (361)
T ss_pred eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCc-ceecccc--
Confidence 2 233455688999999999999999999999999999887654431 112234567889999999998 4667665
Q ss_pred CCCeEEEEECC------------------CCceEEEe-ecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCc
Q 019847 212 EDGCIKIWNVQ------------------KGTCIHGI-DAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMT 272 (335)
Q Consensus 212 ~d~~i~i~d~~------------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~ 272 (335)
.|+..|+|..- -|+++.++ ...+-+..+.|+|.|..++-. +.|..+.+-|.....
T Consensus 166 ~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv------~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 166 TDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWV------GHDSTVSFVDAAGPS 239 (361)
T ss_pred cCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEe------cCCCceEEeecCCCc
Confidence 89999999641 12233333 345578999999999999866 679999999987665
Q ss_pred -eeecccCCCCceeEeEEcCCC
Q 019847 273 -KVGELQSSNSRILDLSQSPDG 293 (335)
Q Consensus 273 -~~~~~~~~~~~i~~~~~~~~~ 293 (335)
.+..+....-+..++.|-.+.
T Consensus 240 ~~v~~~~~~~lP~ls~~~ise~ 261 (361)
T KOG1523|consen 240 ERVQSVATAQLPLLSVSWISEN 261 (361)
T ss_pred hhccchhhccCCceeeEeecCC
Confidence 344444334566777776544
No 191
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.84 E-value=3.8e-19 Score=144.13 Aligned_cols=200 Identities=18% Similarity=0.330 Sum_probs=156.2
Q ss_pred CceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEe
Q 019847 27 NNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATS 106 (335)
Q Consensus 27 ~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~ 106 (335)
+.++.++.||.+.+.+- .++... ....|...+.+-.|+|||.-|++++.||.|++|. ++|-+...+.....+|.|+
T Consensus 76 d~~~i~s~DGkf~il~k-~~rVE~--sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~ 151 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNK-SARVER--SISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCA 151 (737)
T ss_pred ceEEEEcCCceEEEecc-cchhhh--hhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEE
Confidence 35788889999999874 444433 4468999999999999999999999999999998 4565555666677899999
Q ss_pred eecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeecc
Q 019847 107 SWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFT 186 (335)
Q Consensus 107 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 186 (335)
+|.|+..+.+++.+ +.+.+=.+..... ....+.|.+-|.++.|++..+++++|++|-..++||-. +..+..-.
T Consensus 152 ~W~p~S~~vl~c~g--~h~~IKpL~~n~k-~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~----G~~Lf~S~ 224 (737)
T KOG1524|consen 152 RWAPNSNSIVFCQG--GHISIKPLAANSK-IIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ----GANLFTSA 224 (737)
T ss_pred EECCCCCceEEecC--CeEEEeecccccc-eeEEeccCcEEEEeecCccccceeecCCceeEEeeccc----CcccccCC
Confidence 99996677777655 4455555554444 34478999999999999999999999999999999954 35577777
Q ss_pred CCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeee
Q 019847 187 DHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGH 252 (335)
Q Consensus 187 ~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (335)
.|..+|++++|+|+ .+++.++ -+++|+=. ...+.|..++|++||..++.|.
T Consensus 225 ~~ey~ITSva~npd--~~~~v~S---~nt~R~~~----------p~~GSifnlsWS~DGTQ~a~gt 275 (737)
T KOG1524|consen 225 AEEYAITSVAFNPE--KDYLLWS---YNTARFSS----------PRVGSIFNLSWSADGTQATCGT 275 (737)
T ss_pred hhccceeeeeeccc--cceeeee---eeeeeecC----------CCccceEEEEEcCCCceeeccc
Confidence 89999999999999 3566553 45555221 1245788999999999998873
No 192
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.84 E-value=5.7e-18 Score=140.18 Aligned_cols=232 Identities=11% Similarity=0.154 Sum_probs=158.1
Q ss_pred EEEECCCcEEEEeCCC-ce--eEeeecccccceeEeeecCCCCCEEEEee-CCCcEEEEecccCCeee-EEeecCCCCEE
Q 019847 74 AVGYMDSKLQLWDAET-SK--LVRNLEGHHRRVATSSWNHWNGHILTSGS-KDKSIINHDVRVSNNVT-SCIKAHSGEVC 148 (335)
Q Consensus 74 ~~~~~dg~i~iw~~~~-~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~-~~~~~~~~~i~ 148 (335)
++...++.|++|++.+ ++ .+..+. +.+....+.++| ++++|++++ .++.|.+|++.....+. .......+...
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~sp-d~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~ 83 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISP-DKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPT 83 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECC-CCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCce
Confidence 3345789999999964 33 444454 346678899999 888876654 58899999997332221 11112334567
Q ss_pred EEEeecCCCEEEEEeC-CCeEEEEEccCCCc-ccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCce
Q 019847 149 GLKWSNEGNLLASGGD-DNVVRIWERSKMSS-SKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTC 226 (335)
Q Consensus 149 ~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~ 226 (335)
.++++|+++++++++. ++.|.+|+++.... ...+.... +......++++|++++++++.. .++.|.+||+.+...
T Consensus 84 ~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~--~~~~v~v~d~~~~g~ 160 (330)
T PRK11028 84 HISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCL--KEDRIRLFTLSDDGH 160 (330)
T ss_pred EEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeC--CCCEEEEEEECCCCc
Confidence 8999999998888764 78999999864221 12233222 2234667889999988888776 789999999976432
Q ss_pred EE-------EeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCC--C--ceeecccCC------CCceeEeEE
Q 019847 227 IH-------GIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPN--M--TKVGELQSS------NSRILDLSQ 289 (335)
Q Consensus 227 ~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~--~--~~~~~~~~~------~~~i~~~~~ 289 (335)
+. ..........+.|+|+++++++.. ..++.|.+|+++. + +.+..+..+ ......+.+
T Consensus 161 l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~-----~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~ 235 (330)
T PRK11028 161 LVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVN-----ELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHI 235 (330)
T ss_pred ccccCCCceecCCCCCCceEEECCCCCEEEEEe-----cCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEE
Confidence 21 222344567899999999997763 4589999999973 2 223333221 112346889
Q ss_pred cCCCCEEEEEeC-CCcEEEEecCCCCC
Q 019847 290 SPDGLTVATAGA-DETIRFWEAFGPSG 315 (335)
Q Consensus 290 ~~~~~~l~~~~~-dg~v~iw~~~~~~~ 315 (335)
+|++++|+++.. ++.|.+|++.....
T Consensus 236 ~pdg~~lyv~~~~~~~I~v~~i~~~~~ 262 (330)
T PRK11028 236 TPDGRHLYACDRTASLISVFSVSEDGS 262 (330)
T ss_pred CCCCCEEEEecCCCCeEEEEEEeCCCC
Confidence 999999999854 78999999976543
No 193
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.84 E-value=7.3e-20 Score=151.20 Aligned_cols=244 Identities=14% Similarity=0.215 Sum_probs=171.7
Q ss_pred eeecCCceEE--EecCCeEEEEEecCCceeeEEeec--CCCCCceEEEEcC-CCCEEEEEECCCcEEEEeCCCc------
Q 019847 22 IDWGRNNVLA--VALGPVLFLWKWENGKVKKLLQVP--GEDDYPTSVSWSH-DAKTLAVGYMDSKLQLWDAETS------ 90 (335)
Q Consensus 22 ~~~~~~~~~~--~~~~~~i~vw~~~~~~~~~~~~~~--~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~------ 90 (335)
++-+..+.++ ++..|.|-||+++..-..+--.++ -....|+.+.|.| |...||+++.||.|++|.+..+
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~ 666 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENE 666 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCccc
Confidence 4444444333 356899999998754322221121 1356799999999 7789999999999999998754
Q ss_pred -eeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEE
Q 019847 91 -KLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVR 169 (335)
Q Consensus 91 -~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 169 (335)
.....+..|...|+++.|+|-..+.|++++.|-+|++||+.+... ...+.+|.+.|..++|+|+|+.+|+.+.||+|+
T Consensus 667 ~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~-~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~r 745 (1012)
T KOG1445|consen 667 MTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKL-YSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLR 745 (1012)
T ss_pred CCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhh-hheeccCcCceeEEEECCCCcceeeeecCceEE
Confidence 345667889999999999998899999999999999999997665 556889999999999999999999999999999
Q ss_pred EEEccCCCcccceeeccCCC-CCeeEEEecCCCCcEEEEec-CCCCCeEEEEECCCCc--eEEEe--ecCCcEeEEEeCC
Q 019847 170 IWERSKMSSSKSLHRFTDHC-GGVKALAWSPHQVNVLATGG-GREDGCIKIWNVQKGT--CIHGI--DAKAQICGLEWNR 243 (335)
Q Consensus 170 iwd~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~-g~~d~~i~i~d~~~~~--~~~~~--~~~~~~~~~~~~~ 243 (335)
+|..+.... +++.-.+.. ..--.+.|.-+|..++++|- ......|.+||.++-. .+.+. +....+.--.+.+
T Consensus 746 Vy~Prs~e~--pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~ 823 (1012)
T KOG1445|consen 746 VYEPRSREQ--PVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDY 823 (1012)
T ss_pred EeCCCCCCC--ccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccC
Confidence 999876432 333222211 22346788889988877762 0123578888876532 33222 2222222233455
Q ss_pred CCceeeeeeeeeeecCCCeEEEEECCCCce
Q 019847 244 HHKEILSGHGFSASGDGNKLCLWKYPNMTK 273 (335)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~ 273 (335)
+...++ .++-.|..|.+|.+-...+
T Consensus 824 Ds~~lf-----ltGKGD~~v~~yEv~~esP 848 (1012)
T KOG1445|consen 824 DSNVLF-----LTGKGDRFVNMYEVIYESP 848 (1012)
T ss_pred CCceEE-----EecCCCceEEEEEecCCCc
Confidence 554442 2335688999998755443
No 194
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.84 E-value=5.2e-19 Score=150.19 Aligned_cols=244 Identities=16% Similarity=0.231 Sum_probs=179.2
Q ss_pred ccceeeeecC---CceEEEecCCeEEEEEecCCceeeE----EeecCCCCCceEEEEcCCC--CEEEEEECCCcEEEEeC
Q 019847 17 YYSKVIDWGR---NNVLAVALGPVLFLWKWENGKVKKL----LQVPGEDDYPTSVSWSHDA--KTLAVGYMDSKLQLWDA 87 (335)
Q Consensus 17 ~~~~~~~~~~---~~~~~~~~~~~i~vw~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iw~~ 87 (335)
..+.|+.+++ +.++.++.+|.|.+||+..+..... .....|..+++.+.|..+. .-+++++.||.|..|++
T Consensus 243 s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~ 322 (555)
T KOG1587|consen 243 SEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDT 322 (555)
T ss_pred CceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeec
Confidence 3466677665 4566666899999999987765321 2224688999999997744 44999999999999987
Q ss_pred CCceeE------eeec------ccccceeEeeecCCCCCEEEEeeCCCcEEEEecc---cCC----eeeEEeecCCCCEE
Q 019847 88 ETSKLV------RNLE------GHHRRVATSSWNHWNGHILTSGSKDKSIINHDVR---VSN----NVTSCIKAHSGEVC 148 (335)
Q Consensus 88 ~~~~~~------~~~~------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~---~~~----~~~~~~~~~~~~i~ 148 (335)
+.-... .... .....+++++|.+.+.+.|+.|+.+|.|.--+.. ... +.......|.++|+
T Consensus 323 ~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~ 402 (555)
T KOG1587|consen 323 DMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVY 402 (555)
T ss_pred cccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceE
Confidence 643221 1111 1235789999999999999999999999873332 222 12334556889999
Q ss_pred EEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCc--e
Q 019847 149 GLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGT--C 226 (335)
Q Consensus 149 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~--~ 226 (335)
++.++|=+..++..+.|.+++||.... ...++..+..+...+++++|+|..+.+++++. .||.+.+||+.... +
T Consensus 403 ~v~~nPF~~k~fls~gDW~vriWs~~~--~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d--~~G~l~iWDLl~~~~~P 478 (555)
T KOG1587|consen 403 AVSRNPFYPKNFLSVGDWTVRIWSEDV--IASPLLSLDSSPDYVTDVAWSPTRPAVFATVD--GDGNLDIWDLLQDDEEP 478 (555)
T ss_pred eeecCCCccceeeeeccceeEeccccC--CCCcchhhhhccceeeeeEEcCcCceEEEEEc--CCCceehhhhhccccCC
Confidence 999999554444444499999999552 24566777778888999999999999999986 89999999997543 3
Q ss_pred EEEeec-CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCC
Q 019847 227 IHGIDA-KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPN 270 (335)
Q Consensus 227 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~ 270 (335)
+.+... ....+.+.|++.|+.+++| ...|.+++|++..
T Consensus 479 v~s~~~~~~~l~~~~~s~~g~~lavG------d~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 479 VLSQKVCSPALTRVRWSPNGKLLAVG------DANGTTHILKLSE 517 (555)
T ss_pred cccccccccccceeecCCCCcEEEEe------cCCCcEEEEEcCc
Confidence 333332 3456778889999999998 6799999999853
No 195
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.84 E-value=8.2e-19 Score=149.55 Aligned_cols=233 Identities=13% Similarity=0.153 Sum_probs=158.7
Q ss_pred CCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCC---CcEEEEecccCCeeeEEeecCCCCEEEEEeecC
Q 019847 79 DSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKD---KSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNE 155 (335)
Q Consensus 79 dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~ 155 (335)
+..|.+||..... .+.+..+...+....|+| +++.|+..+.+ ..|++||+.++.... +....+....++|+||
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSP-DG~~la~~s~~~~~~~i~i~dl~tg~~~~--l~~~~g~~~~~~wSPD 258 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSP-DGSKLAYVSFENKKSQLVVHDLRSGARKV--VASFRGHNGAPAFSPD 258 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcC-CCCEEEEEEecCCCcEEEEEeCCCCceEE--EecCCCccCceeECCC
Confidence 4689999986544 456667788899999999 88888877644 369999998654321 2222333456899999
Q ss_pred CCEEEEEe-CCCeEEEE--EccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCC-ceEEEee
Q 019847 156 GNLLASGG-DDNVVRIW--ERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKG-TCIHGID 231 (335)
Q Consensus 156 ~~~l~~~~-~dg~i~iw--d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-~~~~~~~ 231 (335)
|+.|+.+. .+|.+.|| |+... ....+..+...+....|+|+|+.++.++. .++...+|++... .....+.
T Consensus 259 G~~La~~~~~~g~~~Iy~~d~~~~----~~~~lt~~~~~~~~~~wSpDG~~i~f~s~--~~g~~~I~~~~~~~~~~~~l~ 332 (429)
T PRK01742 259 GSRLAFASSKDGVLNIYVMGANGG----TPSQLTSGAGNNTEPSWSPDGQSILFTSD--RSGSPQVYRMSASGGGASLVG 332 (429)
T ss_pred CCEEEEEEecCCcEEEEEEECCCC----CeEeeccCCCCcCCEEECCCCCEEEEEEC--CCCCceEEEEECCCCCeEEec
Confidence 99888765 67876665 54332 23444556667889999999988877764 6777888876432 2222232
Q ss_pred cCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecC
Q 019847 232 AKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAF 311 (335)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~ 311 (335)
.. . ....|+|+|+.++.. +. ..+.+||+.+++.......+ ....+.|+|||++|+.++.+|.+.+|.+.
T Consensus 333 ~~-~-~~~~~SpDG~~ia~~------~~-~~i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~ 401 (429)
T PRK01742 333 GR-G-YSAQISADGKTLVMI------NG-DNVVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLV 401 (429)
T ss_pred CC-C-CCccCCCCCCEEEEE------cC-CCEEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence 22 2 457899999998765 22 45667999888654322222 23567899999999999999999888864
Q ss_pred C--CCCCCCccccccccccceec
Q 019847 312 G--PSGDEDSVSHLAGLVSLKTS 332 (335)
Q Consensus 312 ~--~~~~~~~~~~~~~i~~~~~~ 332 (335)
. +........|.+.+....++
T Consensus 402 ~~~G~~~~~l~~~~g~~~~p~ws 424 (429)
T PRK01742 402 SADGRFKARLPGSDGQVKFPAWS 424 (429)
T ss_pred ECCCCceEEccCCCCCCCCcccC
Confidence 3 33444444566666666554
No 196
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.84 E-value=3e-19 Score=148.46 Aligned_cols=236 Identities=19% Similarity=0.311 Sum_probs=173.8
Q ss_pred CceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEE
Q 019847 60 YPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSC 139 (335)
Q Consensus 60 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~ 139 (335)
.|..++|-|||..|+.+.. ..+.+||.+.|..+..+++|.+.|.+++|+. +|..+++|+.|..|.+|...-.+.+
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~-dGkrFASG~aDK~VI~W~~klEG~L--- 88 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAK-DGKRFASGSADKSVIIWTSKLEGIL--- 88 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEcc-CCceeccCCCceeEEEeccccccee---
Confidence 7899999999999888764 4799999999999999999999999999999 9999999999999999997644432
Q ss_pred eecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEE
Q 019847 140 IKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIW 219 (335)
Q Consensus 140 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~ 219 (335)
...|...|.|+.|+|-.+.|++++-. ..-+|..... .+...+ ....+.+++|..||.++ +.|- .+|+|.+-
T Consensus 89 kYSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK----~V~K~k-ss~R~~~CsWtnDGqyl-alG~--~nGTIsiR 159 (1081)
T KOG1538|consen 89 KYSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQK----SVSKHK-SSSRIICCSWTNDGQYL-ALGM--FNGTISIR 159 (1081)
T ss_pred eeccCCeeeEeecCchHHHhhhcchh-hccccChhhh----hHHhhh-hheeEEEeeecCCCcEE-EEec--cCceEEee
Confidence 23699999999999988899998854 4678875532 122211 34568899999999654 4443 79999998
Q ss_pred ECCCCceEEEeec----CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCE
Q 019847 220 NVQKGTCIHGIDA----KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLT 295 (335)
Q Consensus 220 d~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 295 (335)
+- +++....++. +.+|.+++|+|....=. ...+++..-..++.+|.+. |+.+..-+.-.-...++.+.++|.+
T Consensus 160 Nk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~-~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy 236 (1081)
T KOG1538|consen 160 NK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGR-NDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEY 236 (1081)
T ss_pred cC-CCCcceEEeCCCCCCCCceEEEecCCCCCCc-cceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcE
Confidence 74 4555444443 45899999999754100 0001112334555555543 4444333333334578999999999
Q ss_pred EEEEeCCCcEEEEecCC
Q 019847 296 VATAGADETIRFWEAFG 312 (335)
Q Consensus 296 l~~~~~dg~v~iw~~~~ 312 (335)
++.|+.|+.+.+|--++
T Consensus 237 ~LiGGsdk~L~~fTR~G 253 (1081)
T KOG1538|consen 237 ILLGGSDKQLSLFTRDG 253 (1081)
T ss_pred EEEccCCCceEEEeecC
Confidence 99999999999886443
No 197
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=1.1e-19 Score=147.66 Aligned_cols=248 Identities=18% Similarity=0.308 Sum_probs=170.8
Q ss_pred EEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeee-cccccceeEeeecCC-CCCEEEEeeCCCcEEEE
Q 019847 51 LLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNL-EGHHRRVATSSWNHW-NGHILTSGSKDKSIINH 128 (335)
Q Consensus 51 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~~~ 128 (335)
...+.||++.|+|++|+.+|.+|++|+.|-.+.|||.-..+++..+ .+|...|.++.|-|. ++.++++|..|..|+++
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 3456799999999999999999999999999999999888877776 479999999999985 45678899999999999
Q ss_pred eccc---------CCeeeEEeecCCCCEEEEEeecCC-CEEEEEeCCCeEEEEEccCCCcccc-------eeeccCCCCC
Q 019847 129 DVRV---------SNNVTSCIKAHSGEVCGLKWSNEG-NLLASGGDDNVVRIWERSKMSSSKS-------LHRFTDHCGG 191 (335)
Q Consensus 129 d~~~---------~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~-------~~~~~~~~~~ 191 (335)
|+.. .......+.-|...|..++..|++ +.+.++++||+|+-+|++.+..-.+ +..+...--.
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lie 202 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIE 202 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhe
Confidence 9974 223344566688889999999977 8999999999999999997432211 1112222334
Q ss_pred eeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCC
Q 019847 192 VKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNM 271 (335)
Q Consensus 192 v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~ 271 (335)
..++..+|..++++++|+ .|-..++||.+... ..+..... ....|. -.++.++-|.....
T Consensus 203 lk~ltisp~rp~~laVGg--sdpfarLYD~Rr~l--ks~~s~~~---~~~~pp-------------~~~~cv~yf~p~hl 262 (758)
T KOG1310|consen 203 LKCLTISPSRPYYLAVGG--SDPFARLYDRRRVL--KSFRSDGT---MNTCPP-------------KDCRCVRYFSPGHL 262 (758)
T ss_pred eeeeeecCCCCceEEecC--CCchhhhhhhhhhc--cCCCCCcc---ccCCCC-------------cccchhheecCccc
Confidence 678999999999999987 99999999964321 11111100 000010 01122222221111
Q ss_pred ceeec-ccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCC
Q 019847 272 TKVGE-LQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDED 318 (335)
Q Consensus 272 ~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~ 318 (335)
+...- ...-...++-++|+|+|.-|+..-..-.|+++|+...+....
T Consensus 263 kn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~ 310 (758)
T KOG1310|consen 263 KNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTP 310 (758)
T ss_pred cCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCcee
Confidence 00000 000111367789999997666555555899999988765543
No 198
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.83 E-value=2.8e-17 Score=135.79 Aligned_cols=277 Identities=12% Similarity=0.094 Sum_probs=180.2
Q ss_pred ecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCC
Q 019847 33 ALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWN 112 (335)
Q Consensus 33 ~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~ 112 (335)
..++.|.+.|..+.+....+.. ....-..+.|+|||+++++++.||.|.++|+.+++.+.+++.. .....+++++ +
T Consensus 13 ~~~~~v~viD~~t~~~~~~i~~--~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i~~s~-D 88 (369)
T PF02239_consen 13 RGSGSVAVIDGATNKVVARIPT--GGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGIAVSP-D 88 (369)
T ss_dssp GGGTEEEEEETTT-SEEEEEE---STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEEEE---T
T ss_pred cCCCEEEEEECCCCeEEEEEcC--CCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcceEEEcC-C
Confidence 4689999999999887665553 2233345789999999999999999999999999999999854 4578899999 8
Q ss_pred CCEEEEee-CCCcEEEEecccCCeeeEEeec------CCCCEEEEEeecCCCEEEEEeCC-CeEEEEEccCCCcccceee
Q 019847 113 GHILTSGS-KDKSIINHDVRVSNNVTSCIKA------HSGEVCGLKWSNEGNLLASGGDD-NVVRIWERSKMSSSKSLHR 184 (335)
Q Consensus 113 ~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~ 184 (335)
+++++++. .++.+.++|.++.+.+...... ....+..+..+|....++..-.| +.|.+.|....... ....
T Consensus 89 G~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~-~~~~ 167 (369)
T PF02239_consen 89 GKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNL-KVTT 167 (369)
T ss_dssp TTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCE-EEEE
T ss_pred CCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccc-ceee
Confidence 88887665 6899999999877654433211 23467788888888866665554 88888887764321 1222
Q ss_pred ccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecC-------------------------------
Q 019847 185 FTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAK------------------------------- 233 (335)
Q Consensus 185 ~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~------------------------------- 233 (335)
+ ..........|+|++++++++.. .++.|-++|.++++.+..++..
T Consensus 168 i-~~g~~~~D~~~dpdgry~~va~~--~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~ 244 (369)
T PF02239_consen 168 I-KVGRFPHDGGFDPDGRYFLVAAN--GSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIP 244 (369)
T ss_dssp E-E--TTEEEEEE-TTSSEEEEEEG--GGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEE
T ss_pred e-cccccccccccCcccceeeeccc--ccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecc
Confidence 2 23455678999999998888765 6778989998877655433210
Q ss_pred ------------------------CcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCC-CceeEeE
Q 019847 234 ------------------------AQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSN-SRILDLS 288 (335)
Q Consensus 234 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~-~~i~~~~ 288 (335)
+.-.-+..+|+++++.+.. ..+.+.+.|.++|.++.+.+.++.... ..+..+.
T Consensus 245 ~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~--~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~e 322 (369)
T PF02239_consen 245 LIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDT--FLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHME 322 (369)
T ss_dssp EEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE---TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEE
T ss_pred cccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeec--cCCCCCceEEEEECcCcceeEEEeccCCCcEeccE
Confidence 0012245577777776652 123457899999999998887775332 3588999
Q ss_pred EcCCCCEEEEEeCC--CcEEEEecCCCCCCCCc
Q 019847 289 QSPDGLTVATAGAD--ETIRFWEAFGPSGDEDS 319 (335)
Q Consensus 289 ~~~~~~~l~~~~~d--g~v~iw~~~~~~~~~~~ 319 (335)
|+++|+.+..+..+ |.|.+||..+.+.....
T Consensus 323 f~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i 355 (369)
T PF02239_consen 323 FNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRI 355 (369)
T ss_dssp E-TTSSEEEEEEE--TTEEEEEETTTTEEEEEE
T ss_pred ECCCCCEEEEEEecCCCEEEEEECCCcEEEEEE
Confidence 99999977666543 46999999987665543
No 199
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=1.3e-17 Score=129.05 Aligned_cols=285 Identities=18% Similarity=0.258 Sum_probs=188.7
Q ss_pred cccceeeeecCC--ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCC-CCEEEEEECCCcEEEEeCCCc--
Q 019847 16 DYYSKVIDWGRN--NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHD-AKTLAVGYMDSKLQLWDAETS-- 90 (335)
Q Consensus 16 ~~~~~~~~~~~~--~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iw~~~~~-- 90 (335)
......++|++. .+++++.|..|++|+-.+... ..++. ..+..|+|++|-|. ++.|++|+..| |.+|.....
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst~p-t~Lks-~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln 174 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCP-TKLKS-VSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLN 174 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCCCCC-ceecc-hhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccc
Confidence 455677999984 577788999999999776332 23322 34677999999994 56788887655 999986421
Q ss_pred --ee----------EeeecccccceeEeeecCCCCCEEEEeeC-CCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCC
Q 019847 91 --KL----------VRNLEGHHRRVATSSWNHWNGHILTSGSK-DKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGN 157 (335)
Q Consensus 91 --~~----------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 157 (335)
+. +..-.+| .+|+++.|.+ ++..+++++. |..|.+||..++....-. ....+.++-+.||||+.
T Consensus 175 ~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~-dgt~l~tAS~gsssi~iWdpdtg~~~pL~-~~glgg~slLkwSPdgd 251 (445)
T KOG2139|consen 175 ANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNE-DGTILVTASFGSSSIMIWDPDTGQKIPLI-PKGLGGFSLLKWSPDGD 251 (445)
T ss_pred cccccccccccchhheeCCCC-ceeeEEEEcC-CCCEEeecccCcceEEEEcCCCCCccccc-ccCCCceeeEEEcCCCC
Confidence 11 1112233 6899999999 8888888874 678999999977653322 23567788999999999
Q ss_pred EEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCC----c--------
Q 019847 158 LLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKG----T-------- 225 (335)
Q Consensus 158 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~----~-------- 225 (335)
+|.++.-|+..++|+....-. ..+ ..-..+.|...+|+|.|..++.+++ +.-++|.+... .
T Consensus 252 ~lfaAt~davfrlw~e~q~wt--~er-w~lgsgrvqtacWspcGsfLLf~~s----gsp~lysl~f~~~~~~~~~~~~~k 324 (445)
T KOG2139|consen 252 VLFAATCDAVFRLWQENQSWT--KER-WILGSGRVQTACWSPCGSFLLFACS----GSPRLYSLTFDGEDSVFLRPQSIK 324 (445)
T ss_pred EEEEecccceeeeehhcccce--ecc-eeccCCceeeeeecCCCCEEEEEEc----CCceEEEEeecCCCccccCcccce
Confidence 999999999999997554321 111 2223458999999999999998875 44455544211 0
Q ss_pred ---eEEEee----------cCCcEeEEEeCCCCceeeeeeeeee--ecCCCeEEEEECCCCceeeccc-C--CCCceeEe
Q 019847 226 ---CIHGID----------AKAQICGLEWNRHHKEILSGHGFSA--SGDGNKLCLWKYPNMTKVGELQ-S--SNSRILDL 287 (335)
Q Consensus 226 ---~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~i~d~~~~~~~~~~~-~--~~~~i~~~ 287 (335)
++..+. ..+++.+++|+|.|.++++...-.. .--...|.+||.+..-.+.-.. + .......+
T Consensus 325 ~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~I 404 (445)
T KOG2139|consen 325 RVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYI 404 (445)
T ss_pred eeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceE
Confidence 011110 1357889999999999998642000 0012456677766544332221 1 01123445
Q ss_pred EEcC---CCCEEEEEeCCCcEEEEecCCC
Q 019847 288 SQSP---DGLTVATAGADETIRFWEAFGP 313 (335)
Q Consensus 288 ~~~~---~~~~l~~~~~dg~v~iw~~~~~ 313 (335)
+|+| ++.+|..+=..|.+.-|++.-.
T Consensus 405 sF~pl~n~g~lLsiaWsTGriq~ypl~f~ 433 (445)
T KOG2139|consen 405 SFGPLKNEGRLLSIAWSTGRIQRYPLTFQ 433 (445)
T ss_pred EeeecccCCcEEEEEeccCceEeeeeEEE
Confidence 6665 5778888878899988877543
No 200
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.83 E-value=3.2e-17 Score=139.47 Aligned_cols=240 Identities=13% Similarity=0.085 Sum_probs=160.3
Q ss_pred eEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEEC---CCcEEEEeCCCceeEeeecccccceeEeeecCCCC
Q 019847 37 VLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYM---DSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNG 113 (335)
Q Consensus 37 ~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 113 (335)
.|.++|.+....... ..+...+...+|+|||+.|+..+. +..|.+|++.+++... +...........|+| ++
T Consensus 180 ~l~~~d~dg~~~~~l---t~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SP-DG 254 (429)
T PRK03629 180 ELRVSDYDGYNQFVV---HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSP-DG 254 (429)
T ss_pred eEEEEcCCCCCCEEe---ecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECC-CC
Confidence 799999887664333 235667899999999999987642 4579999998875433 222334456789999 88
Q ss_pred CEEEEe-eCCC--cEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCC-CeEEEE--EccCCCcccceeeccC
Q 019847 114 HILTSG-SKDK--SIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDD-NVVRIW--ERSKMSSSKSLHRFTD 187 (335)
Q Consensus 114 ~~l~~~-~~dg--~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~i~iw--d~~~~~~~~~~~~~~~ 187 (335)
+.|+.. +.+| .|++||+.++.. . .+..+...+....|+|||+.|+..+.+ +...+| |+.... ...+..
T Consensus 255 ~~La~~~~~~g~~~I~~~d~~tg~~-~-~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~----~~~lt~ 328 (429)
T PRK03629 255 SKLAFALSKTGSLNLYVMDLASGQI-R-QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA----PQRITW 328 (429)
T ss_pred CEEEEEEcCCCCcEEEEEECCCCCE-E-EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC----eEEeec
Confidence 777654 4455 588899876543 3 334445567889999999988877754 444444 554432 222222
Q ss_pred CCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEE
Q 019847 188 HCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWK 267 (335)
Q Consensus 188 ~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d 267 (335)
.........|+|+|+.++.+........|.+||+.+++.. .+..........|+|+|+.++.... .+....+.+++
T Consensus 329 ~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~~~~~~p~~SpDG~~i~~~s~---~~~~~~l~~~~ 404 (429)
T PRK03629 329 EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDTFLDETPSIAPNGTMVIYSSS---QGMGSVLNLVS 404 (429)
T ss_pred CCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCCCCCCCceECCCCCEEEEEEc---CCCceEEEEEE
Confidence 3344567899999988877664112346889999888643 3333333456889999999887631 01123477788
Q ss_pred CCCCceeecccCCCCceeEeEEcCC
Q 019847 268 YPNMTKVGELQSSNSRILDLSQSPD 292 (335)
Q Consensus 268 ~~~~~~~~~~~~~~~~i~~~~~~~~ 292 (335)
+ ++.....+..|.+.+...+|+|-
T Consensus 405 ~-~G~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 405 T-DGRFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred C-CCCCeEECccCCCCcCCcccCCC
Confidence 7 45555667778888899999873
No 201
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=1.4e-17 Score=142.46 Aligned_cols=283 Identities=16% Similarity=0.210 Sum_probs=203.9
Q ss_pred eeecC-CceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCC---CEEEEEECCCcEEEEeCCCceeEeeec
Q 019847 22 IDWGR-NNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDA---KTLAVGYMDSKLQLWDAETSKLVRNLE 97 (335)
Q Consensus 22 ~~~~~-~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~iw~~~~~~~~~~~~ 97 (335)
-.|++ ++.+.+..+..|.||...++++.. .+++|..+++.+.+.|.. .++.+++.+|.|++||...+++++.+.
T Consensus 22 avfSnD~k~l~~~~~~~V~VyS~~Tg~~i~--~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~ 99 (792)
T KOG1963|consen 22 AVFSNDAKFLFLCTGNFVKVYSTATGECIT--SLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFD 99 (792)
T ss_pred cccccCCcEEEEeeCCEEEEEecchHhhhh--hcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEe
Confidence 34555 467788889999999999998765 677999999999998854 477899999999999998888777664
Q ss_pred ccccceeEeee-----------------------------------------------------------cCCCCCEEEE
Q 019847 98 GHHRRVATSSW-----------------------------------------------------------NHWNGHILTS 118 (335)
Q Consensus 98 ~~~~~v~~~~~-----------------------------------------------------------~~~~~~~l~~ 118 (335)
.+ .++..+.+ ++ .+. +..
T Consensus 100 ~~-~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~-~ge-~~~ 176 (792)
T KOG1963|consen 100 NN-LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNN-SGE-FKG 176 (792)
T ss_pred cC-CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcC-Cce-EEE
Confidence 22 11111111 11 111 111
Q ss_pred eeCCCcEEEEecccCCee---eEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccC-CCcccceeeccCCCCCeeE
Q 019847 119 GSKDKSIINHDVRVSNNV---TSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSK-MSSSKSLHRFTDHCGGVKA 194 (335)
Q Consensus 119 ~~~dg~i~~~d~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~v~~ 194 (335)
...+..+.+|+....... ...-..|...+++.+++|+++++|+|..||.|.+|.--. .......+.+.-|..+|++
T Consensus 177 i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~ 256 (792)
T KOG1963|consen 177 IVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNS 256 (792)
T ss_pred EEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccce
Confidence 112334455555442211 111234666789999999999999999999999997433 2223345556668899999
Q ss_pred EEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCcee
Q 019847 195 LAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKV 274 (335)
Q Consensus 195 ~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~ 274 (335)
+.|+++|.+++..| ..+.+.+|.+.+++...--+...++..+.++|++.+.+.. ..|+.|.+....+.+..
T Consensus 257 L~fS~~G~~LlSGG---~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~------~~DNqI~li~~~dl~~k 327 (792)
T KOG1963|consen 257 LSFSSDGAYLLSGG---REGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLV------LEDNQIHLIKASDLEIK 327 (792)
T ss_pred eEEecCCceEeecc---cceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEE------ecCceEEEEeccchhhh
Confidence 99999998666543 8999999999999844444568899999999999988776 45999999988766554
Q ss_pred ecccCC-----------CCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCC
Q 019847 275 GELQSS-----------NSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDED 318 (335)
Q Consensus 275 ~~~~~~-----------~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~ 318 (335)
.++.+- .+-.+.++++|.-+.++-.+..|.|++||+.+.....+
T Consensus 328 ~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~ 382 (792)
T KOG1963|consen 328 STISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYK 382 (792)
T ss_pred hhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeee
Confidence 444322 23356788999777788888999999999988766544
No 202
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.82 E-value=2.1e-16 Score=122.71 Aligned_cols=274 Identities=16% Similarity=0.219 Sum_probs=193.9
Q ss_pred ceeeeecCC-ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECC--CcEEEEeCCCceeEee
Q 019847 19 SKVIDWGRN-NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMD--SKLQLWDAETSKLVRN 95 (335)
Q Consensus 19 ~~~~~~~~~-~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~iw~~~~~~~~~~ 95 (335)
++.+.|+.+ .+++.+.....++|+.+.... ..........|..+-|+ ..++|..+.+ ..+++++++.+..+..
T Consensus 8 i~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k--~~~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~ICe 83 (391)
T KOG2110|consen 8 INFIGFNQDSTLLSVGSKDGYKIFSCSPFEK--CFSKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTTICE 83 (391)
T ss_pred eeeeeeccceeEEEccCCCceeEEecCchHH--hhcccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccCceEEE
Confidence 455668875 577777777788998766443 22222223345555565 4456665543 3589999988887777
Q ss_pred ecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEee--cCCCCEEEEEeecCCCEEEEEe--CCCeEEEE
Q 019847 96 LEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIK--AHSGEVCGLKWSNEGNLLASGG--DDNVVRIW 171 (335)
Q Consensus 96 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~--~dg~i~iw 171 (335)
+. ...+|.++.+ +.+.|+++-.+. |+|||+++.+.+..... .+...+.++.+++.+.++|.-+ ..|.|.+|
T Consensus 84 ~~-fpt~IL~Vrm---Nr~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~ 158 (391)
T KOG2110|consen 84 IF-FPTSILAVRM---NRKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLF 158 (391)
T ss_pred Ee-cCCceEEEEE---ccceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEE
Confidence 66 5678999999 456666666554 99999997776443322 3566677777777778888643 46899999
Q ss_pred EccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCC-eEEEEECCCCceEEEeecC---CcEeEEEeCCCCce
Q 019847 172 ERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDG-CIKIWNVQKGTCIHGIDAK---AQICGLEWNRHHKE 247 (335)
Q Consensus 172 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~-~i~i~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 247 (335)
|+.+ .++...+..|.+++-+++|+++|. ++++++ +.| .||++.+.+|+.+.+++.+ ..|.+++|+|++.+
T Consensus 159 d~~n---l~~v~~I~aH~~~lAalafs~~G~-llATAS--eKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~ 232 (391)
T KOG2110|consen 159 DTIN---LQPVNTINAHKGPLAALAFSPDGT-LLATAS--EKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQF 232 (391)
T ss_pred Eccc---ceeeeEEEecCCceeEEEECCCCC-EEEEec--cCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCe
Confidence 9776 456777789999999999999995 777765 555 5899999999999999865 36899999999999
Q ss_pred eeeeeeeeeecCCCeEEEEECCCCce---------------------------eecc----------cCCCC---ceeEe
Q 019847 248 ILSGHGFSASGDGNKLCLWKYPNMTK---------------------------VGEL----------QSSNS---RILDL 287 (335)
Q Consensus 248 ~~~~~~~~~~~~~~~i~i~d~~~~~~---------------------------~~~~----------~~~~~---~i~~~ 287 (335)
|.+. ++.++|++|.+..... +... +...+ .+..+
T Consensus 233 L~~s------S~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l 306 (391)
T KOG2110|consen 233 LAAS------SNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSL 306 (391)
T ss_pred EEEe------cCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEe
Confidence 8876 7899999998753210 0000 00011 12222
Q ss_pred EEcCCCCEEEEEeCCCcEEEEecCCC
Q 019847 288 SQSPDGLTVATAGADETIRFWEAFGP 313 (335)
Q Consensus 288 ~~~~~~~~l~~~~~dg~v~iw~~~~~ 313 (335)
.-.+...++..++.||.++.|.+...
T Consensus 307 ~~~~~~~~v~vas~dG~~y~y~l~~~ 332 (391)
T KOG2110|consen 307 SSIQKIPRVLVASYDGHLYSYRLPPK 332 (391)
T ss_pred eccCCCCEEEEEEcCCeEEEEEcCCC
Confidence 22246778999999999999999875
No 203
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=7e-19 Score=140.88 Aligned_cols=295 Identities=15% Similarity=0.282 Sum_probs=222.3
Q ss_pred CCCcccccceeeeecC--CceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcC--CCCEEEEEECCCcEEEEe
Q 019847 11 PYLMEDYYSKVIDWGR--NNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSH--DAKTLAVGYMDSKLQLWD 86 (335)
Q Consensus 11 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iw~ 86 (335)
.--++...++.+.|+. +.+++++.|..|.+||+..++....+. .+|...|....|-| +...+++++.||.+++=.
T Consensus 137 kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~-SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~ 215 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFE-SGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSE 215 (559)
T ss_pred cccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccc-cccccchhhhhccCCCCCcCceeccccCceeeee
Confidence 3345667788899987 356667788999999999888644433 58999999999988 446789999999999887
Q ss_pred CCCcee---EeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCee--eEEeecCCC---CEEEEEeec-CCC
Q 019847 87 AETSKL---VRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNV--TSCIKAHSG---EVCGLKWSN-EGN 157 (335)
Q Consensus 87 ~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~--~~~~~~~~~---~i~~~~~~~-~~~ 157 (335)
+..... ...+..|.++|.-++.-|.....|.+++.|+.+.-+|++..... ......+.. ....++..| +..
T Consensus 216 i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~ 295 (559)
T KOG1334|consen 216 ILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTN 295 (559)
T ss_pred eccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCcc
Confidence 653322 34566799999999999988999999999999999999876542 222333444 567888888 455
Q ss_pred EEEEEeCCCeEEEEEccCCCcc---cceeecc------CCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCC--C--
Q 019847 158 LLASGGDDNVVRIWERSKMSSS---KSLHRFT------DHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQK--G-- 224 (335)
Q Consensus 158 ~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~------~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~--~-- 224 (335)
.+++++.|..+++||.+..... ..+..+. ...-.|++++++.++..++++. .|-.|+++.-.- |
T Consensus 296 ~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSY---nDe~IYLF~~~~~~G~~ 372 (559)
T KOG1334|consen 296 EFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASY---NDEDIYLFNKSMGDGSE 372 (559)
T ss_pred ccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeee---cccceEEeccccccCCC
Confidence 8999999999999998754322 1112221 2344589999998888899987 588999995432 2
Q ss_pred --------ceEEE-eecC---CcEeEEE-eCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcC
Q 019847 225 --------TCIHG-IDAK---AQICGLE-WNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSP 291 (335)
Q Consensus 225 --------~~~~~-~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~ 291 (335)
..+.. ++++ ..|..+. |-|...++++| ++-|.|.||+-.+++.+..+.+-..-|+||.=+|
T Consensus 373 p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSG------SDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP 446 (559)
T KOG1334|consen 373 PDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSG------SDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHP 446 (559)
T ss_pred CCCCcchhhccchhhcccccccccceeeeccCccceEEec------CccceEEEEecchhHHHHHhhcccceEeccCCCC
Confidence 11112 3332 2355555 45778888887 7899999999999999999988777899999999
Q ss_pred CCCEEEEEeCCCcEEEEecCCCCC
Q 019847 292 DGLTVATAGADETIRFWEAFGPSG 315 (335)
Q Consensus 292 ~~~~l~~~~~dg~v~iw~~~~~~~ 315 (335)
--..||+++-|..|+||-....+.
T Consensus 447 ~~PvLAsSGid~DVKIWTP~~~er 470 (559)
T KOG1334|consen 447 HLPVLASSGIDHDVKIWTPLTAER 470 (559)
T ss_pred CCchhhccCCccceeeecCCcccc
Confidence 999999999999999998755443
No 204
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=5.7e-18 Score=137.83 Aligned_cols=211 Identities=18% Similarity=0.271 Sum_probs=154.2
Q ss_pred CCCcccccceeeeecCC-c-eEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcC--CCCEEEEEECCCcEEEEe
Q 019847 11 PYLMEDYYSKVIDWGRN-N-VLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSH--DAKTLAVGYMDSKLQLWD 86 (335)
Q Consensus 11 ~~~~~~~~~~~~~~~~~-~-~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iw~ 86 (335)
.-..+...++|++|+.+ . +++++.|-.+.|||.-..+....+. .+|...|.++.|-| +.+.+++|..|..|+++|
T Consensus 45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~-TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfd 123 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSIS-TGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFD 123 (758)
T ss_pred hhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeee-cccccceeEEeeeccCCCeEEEeccCcceEEEEe
Confidence 34557788999999985 3 4445567899999998777665554 58999999999999 567889999999999999
Q ss_pred CCC----------ceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEE---------eecCCCCE
Q 019847 87 AET----------SKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSC---------IKAHSGEV 147 (335)
Q Consensus 87 ~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~---------~~~~~~~i 147 (335)
+.. .+....+..|...|..++-.|..++.+.++++||+|+-+|++........ +....-..
T Consensus 124 l~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~liel 203 (758)
T KOG1310|consen 124 LDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIEL 203 (758)
T ss_pred cccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhee
Confidence 974 23445567788999999999966699999999999999999864322111 11122356
Q ss_pred EEEEeec-CCCEEEEEeCCCeEEEEEccCCCcc-----c----------ceeec-cCCC--------C---CeeEEEecC
Q 019847 148 CGLKWSN-EGNLLASGGDDNVVRIWERSKMSSS-----K----------SLHRF-TDHC--------G---GVKALAWSP 199 (335)
Q Consensus 148 ~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~-----~----------~~~~~-~~~~--------~---~v~~~~~~~ 199 (335)
.++..+| +..+||+|+.|-..++||.+..... . .+..+ .+|- . .++-+.|+|
T Consensus 204 k~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnp 283 (758)
T KOG1310|consen 204 KCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNP 283 (758)
T ss_pred eeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECC
Confidence 7899999 5679999999999999995432100 0 01111 1111 1 145678999
Q ss_pred CCCcEEEEecCCCCCeEEEEECCCCc
Q 019847 200 HQVNVLATGGGREDGCIKIWNVQKGT 225 (335)
Q Consensus 200 ~~~~~~~~~~g~~d~~i~i~d~~~~~ 225 (335)
+|..++++-+ ...|+++|+..++
T Consensus 284 NGtElLvs~~---gEhVYlfdvn~~~ 306 (758)
T KOG1310|consen 284 NGTELLVSWG---GEHVYLFDVNEDK 306 (758)
T ss_pred CCcEEEEeeC---CeEEEEEeecCCC
Confidence 9998988874 5679999986554
No 205
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.82 E-value=1.3e-15 Score=126.29 Aligned_cols=284 Identities=12% Similarity=0.201 Sum_probs=190.6
Q ss_pred eEEEecC----CeEEEEEe--cCCceeeEEeecCCCCCceEEEEcCCCCEEEEEEC----CCcEEEEeCCCc--e--eEe
Q 019847 29 VLAVALG----PVLFLWKW--ENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYM----DSKLQLWDAETS--K--LVR 94 (335)
Q Consensus 29 ~~~~~~~----~~i~vw~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----dg~i~iw~~~~~--~--~~~ 94 (335)
+++++.. +.|++|++ +++++....... .......++++|++++|.+... +|.|..|++... + .+.
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~ 80 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN 80 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence 4555544 78999998 556655444332 3445678999999999999876 578999988753 3 333
Q ss_pred eecccccceeEeeecCCCCCEEEEee-CCCcEEEEecccCCeeeEEe--e-----------cCCCCEEEEEeecCCCEEE
Q 019847 95 NLEGHHRRVATSSWNHWNGHILTSGS-KDKSIINHDVRVSNNVTSCI--K-----------AHSGEVCGLKWSNEGNLLA 160 (335)
Q Consensus 95 ~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~--~-----------~~~~~i~~~~~~~~~~~l~ 160 (335)
...........++.+| ++++|+++. .+|.+.++++.....+.... . .......++.++|++++++
T Consensus 81 ~~~~~g~~p~~i~~~~-~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~ 159 (345)
T PF10282_consen 81 SVPSGGSSPCHIAVDP-DGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVY 159 (345)
T ss_dssp EEEESSSCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEE
T ss_pred eeccCCCCcEEEEEec-CCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEE
Confidence 3433445667899999 777777776 58999999998755433321 1 1235578999999999888
Q ss_pred EEeC-CCeEEEEEccCCCc-ccceeec-cCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECC--CCce--EEEeec-
Q 019847 161 SGGD-DNVVRIWERSKMSS-SKSLHRF-TDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQ--KGTC--IHGIDA- 232 (335)
Q Consensus 161 ~~~~-dg~i~iwd~~~~~~-~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~--~~~~--~~~~~~- 232 (335)
+... ...|.+|++..... ......+ .......+.+.|+|++++++++.- .++.|.++++. ++.. +..+..
T Consensus 160 v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e--~s~~v~v~~~~~~~g~~~~~~~~~~~ 237 (345)
T PF10282_consen 160 VPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNE--LSNTVSVFDYDPSDGSLTEIQTISTL 237 (345)
T ss_dssp EEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEET--TTTEEEEEEEETTTTEEEEEEEEESC
T ss_pred EEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecC--CCCcEEEEeecccCCceeEEEEeeec
Confidence 8653 34799999876431 1111222 234456789999999998888876 89999999988 4432 222221
Q ss_pred ------CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCC--Cc--eeecccCCCCceeEeEEcCCCCEEEEEe-C
Q 019847 233 ------KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPN--MT--KVGELQSSNSRILDLSQSPDGLTVATAG-A 301 (335)
Q Consensus 233 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~--~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~ 301 (335)
......+.++|+|++++++. ...+.|.+|++.. ++ .+..+.......+.++++|+|++|+++. .
T Consensus 238 ~~~~~~~~~~~~i~ispdg~~lyvsn-----r~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~ 312 (345)
T PF10282_consen 238 PEGFTGENAPAEIAISPDGRFLYVSN-----RGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQD 312 (345)
T ss_dssp ETTSCSSSSEEEEEE-TTSSEEEEEE-----CTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETT
T ss_pred cccccccCCceeEEEecCCCEEEEEe-----ccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecC
Confidence 12578899999999998764 5688999999842 33 3333433344578999999999999887 5
Q ss_pred CCcEEEEecCCCCCCCCccc
Q 019847 302 DETIRFWEAFGPSGDEDSVS 321 (335)
Q Consensus 302 dg~v~iw~~~~~~~~~~~~~ 321 (335)
++.|.+|+++..........
T Consensus 313 s~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 313 SNTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp TTEEEEEEEETTTTEEEEEE
T ss_pred CCeEEEEEEeCCCCcEEEec
Confidence 67899999876555444443
No 206
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=1.4e-18 Score=136.75 Aligned_cols=199 Identities=17% Similarity=0.188 Sum_probs=153.0
Q ss_pred eEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCccccee
Q 019847 104 ATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLH 183 (335)
Q Consensus 104 ~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 183 (335)
..++|++ ++..+++++.||.+|+|+.+.... ......|.+.|.++.|+||+++|++-+.| ..+||+.+++.......
T Consensus 148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t-~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t 224 (398)
T KOG0771|consen 148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLT-ILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKT 224 (398)
T ss_pred eEEEEcC-CCCEeeeccccceEEEEecCcchh-hhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcC
Confidence 6789998 999999999999999999775554 33356799999999999999999999999 89999998863322222
Q ss_pred eccCCCCCeeEEEecCCC---CcEEEEecCCCCCeEEEEECCCCce------EEEeecCCcEeEEEeCCCCceeeeeeee
Q 019847 184 RFTDHCGGVKALAWSPHQ---VNVLATGGGREDGCIKIWNVQKGTC------IHGIDAKAQICGLEWNRHHKEILSGHGF 254 (335)
Q Consensus 184 ~~~~~~~~v~~~~~~~~~---~~~~~~~~g~~d~~i~i~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (335)
. .........+.|+.++ ..++++. -..-+.|+.||+....- .+.+.....+++++.+++|++++.|
T Consensus 225 ~-~~k~~~~~~cRF~~d~~~~~l~laa~-~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlG--- 299 (398)
T KOG0771|consen 225 P-FSKDEMFSSCRFSVDNAQETLRLAAS-QFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALG--- 299 (398)
T ss_pred C-cccchhhhhceecccCCCceEEEEEe-cCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEe---
Confidence 1 2223345667777665 2233322 12456677777643221 2223345689999999999999998
Q ss_pred eeecCCCeEEEEECCCCceeeccc-CCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCC
Q 019847 255 SASGDGNKLCLWKYPNMTKVGELQ-SSNSRILDLSQSPDGLTVATAGADETIRFWEAFGP 313 (335)
Q Consensus 255 ~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~ 313 (335)
+.+|.|.|++..+.+.++.++ .|..-|+.+.|+||.+++++.+.|....+..+...
T Consensus 300 ---T~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd 356 (398)
T KOG0771|consen 300 ---TMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVD 356 (398)
T ss_pred ---ccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEeec
Confidence 779999999999988877654 78899999999999999999999999999988764
No 207
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.81 E-value=5.1e-18 Score=137.60 Aligned_cols=259 Identities=15% Similarity=0.286 Sum_probs=180.1
Q ss_pred ceEEEecCCeEEEEEecCCce--eeEEeecCCCCCceEEEEc-----CCCCEEEEEECCCcEEEEeCCCceeEeeec---
Q 019847 28 NVLAVALGPVLFLWKWENGKV--KKLLQVPGEDDYPTSVSWS-----HDAKTLAVGYMDSKLQLWDAETSKLVRNLE--- 97 (335)
Q Consensus 28 ~~~~~~~~~~i~vw~~~~~~~--~~~~~~~~~~~~v~~~~~~-----~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--- 97 (335)
..++..-...+++|+...+.. .++-+..-......|-+|+ |.+--++.|-..|.+.+.|....+..+.+.
T Consensus 136 d~lcFnvg~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r 215 (636)
T KOG2394|consen 136 DRLCFNVGRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEER 215 (636)
T ss_pred CEEEEecCCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchhhHHHHhhhhcc
Confidence 455556667899998874321 1111111112334555563 466678889889999999977633222221
Q ss_pred -ccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEe--ecCCCEEEEEeCCCeEEEEEcc
Q 019847 98 -GHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKW--SNEGNLLASGGDDNVVRIWERS 174 (335)
Q Consensus 98 -~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~l~~~~~dg~i~iwd~~ 174 (335)
-.+..++++.|-|.+...++.+-.+|.+++||... ....+...| .+++..++....-+. .+
T Consensus 216 ~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~-----------~~~~t~p~~~~~k~~~~f~i~t~ksk---~~-- 279 (636)
T KOG2394|consen 216 LINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEI-----------VCGATAPSYQALKDGDQFAILTSKSK---KT-- 279 (636)
T ss_pred cccccceEEEEEEeCCCceEEEEEecCceEEeeccc-----------cccCCCCcccccCCCCeeEEeeeecc---cc--
Confidence 13478999999998889999999999999999731 111111122 235555544332111 00
Q ss_pred CCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec-CCcEeEEEeCCCCceeeeeee
Q 019847 175 KMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA-KAQICGLEWNRHHKEILSGHG 253 (335)
Q Consensus 175 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 253 (335)
..++..+.--.+.|...+|+|||++|++++ .||.+||||..+.+++..++. -+...|++|+|||+++++|
T Consensus 280 ----rNPv~~w~~~~g~in~f~FS~DG~~LA~VS---qDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtG-- 350 (636)
T KOG2394|consen 280 ----RNPVARWHIGEGSINEFAFSPDGKYLATVS---QDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTG-- 350 (636)
T ss_pred ----CCccceeEeccccccceeEcCCCceEEEEe---cCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEec--
Confidence 122333333456899999999997666655 899999999998877665544 4578999999999999998
Q ss_pred eeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCC-----------------------------------C-----
Q 019847 254 FSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPD-----------------------------------G----- 293 (335)
Q Consensus 254 ~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~-----------------------------------~----- 293 (335)
++|.-|.||.+...+.+..-++|.++|..++|.|- +
T Consensus 351 ----GEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~ 426 (636)
T KOG2394|consen 351 ----GEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSS 426 (636)
T ss_pred ----CCcceEEEEEeccceEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccc
Confidence 89999999999999999999999999999999830 1
Q ss_pred --------CEEEEEeCCCcEEEEecCCCCC
Q 019847 294 --------LTVATAGADETIRFWEAFGPSG 315 (335)
Q Consensus 294 --------~~l~~~~~dg~v~iw~~~~~~~ 315 (335)
-.+.+.+.|-.+.+||+.....
T Consensus 427 ~~~~~~v~YRfGSVGqDTqlcLWDlteD~L 456 (636)
T KOG2394|consen 427 FNRINSVTYRFGSVGQDTQLCLWDLTEDVL 456 (636)
T ss_pred cccccceEEEeecccccceEEEEecchhhc
Confidence 1467788999999999986543
No 208
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.81 E-value=4.9e-17 Score=143.78 Aligned_cols=280 Identities=14% Similarity=0.167 Sum_probs=186.8
Q ss_pred eeeecC---CceEEEecCCeEEEEEecC-----CceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCc--
Q 019847 21 VIDWGR---NNVLAVALGPVLFLWKWEN-----GKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETS-- 90 (335)
Q Consensus 21 ~~~~~~---~~~~~~~~~~~i~vw~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-- 90 (335)
.++.++ ..+++++.||+|++|+... +......++......+.++.+.+.++.+|+++.||.|++.+++..
T Consensus 1053 k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~ 1132 (1431)
T KOG1240|consen 1053 KLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNV 1132 (1431)
T ss_pred ceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEcccccc
Confidence 444444 3577788999999999864 223334444445778999999999999999999999999998752
Q ss_pred -----eeEeeeccc--ccceeEeeecCCCCC-EEEEeeCCCcEEEEecccCCeeeE-EeecCCCCEEEEEeecCCCEEEE
Q 019847 91 -----KLVRNLEGH--HRRVATSSWNHWNGH-ILTSGSKDKSIINHDVRVSNNVTS-CIKAHSGEVCGLKWSNEGNLLAS 161 (335)
Q Consensus 91 -----~~~~~~~~~--~~~v~~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~ 161 (335)
...+....+ ..-+..-+|...... .++.+...+.|..||++....... ......+.|++++.+|.+++++.
T Consensus 1133 ~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~Wlvi 1212 (1431)
T KOG1240|consen 1133 SKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVI 1212 (1431)
T ss_pred ccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEE
Confidence 111112211 223344445443444 788889999999999986543221 12335678999999999999999
Q ss_pred EeCCCeEEEEEccCCCcccceee-ccCCCCCeeEEEecCCCC--cEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeE
Q 019847 162 GGDDNVVRIWERSKMSSSKSLHR-FTDHCGGVKALAWSPHQV--NVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICG 238 (335)
Q Consensus 162 ~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~--~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 238 (335)
|+..|.+.+||+|-... +.. ..++..+++.+..+|-.+ ...++++.+..+.|.+|++.+|.+...+-.......
T Consensus 1213 Gts~G~l~lWDLRF~~~---i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ 1289 (1431)
T KOG1240|consen 1213 GTSRGQLVLWDLRFRVP---ILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPI 1289 (1431)
T ss_pred ecCCceEEEEEeecCce---eecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcc
Confidence 99999999999985322 222 223457788887776544 444444322678999999999977666643311111
Q ss_pred --------------------EEeCCCCceeeeeeeeeeecCCCeEEEEECCCCcee------------------------
Q 019847 239 --------------------LEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKV------------------------ 274 (335)
Q Consensus 239 --------------------~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~------------------------ 274 (335)
..+...+..++ +++.|..|+.||....+..
T Consensus 1290 ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~l------tggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~ 1363 (1431)
T KOG1240|consen 1290 LSYALPSNDARKPDSLAGISCGVCEKNGFLL------TGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYDLSTIP 1363 (1431)
T ss_pred hhhhcccccCCCCCcccceeeecccCCceee------ecCCccceeeccCCCcccccccccCccccccccchhccccccC
Confidence 11222222333 4488999999997532211
Q ss_pred -----ec---------------------------ccCCCCceeEeEEcCC-CCEEEEEeCCCcEEEEe
Q 019847 275 -----GE---------------------------LQSSNSRILDLSQSPD-GLTVATAGADETIRFWE 309 (335)
Q Consensus 275 -----~~---------------------------~~~~~~~i~~~~~~~~-~~~l~~~~~dg~v~iw~ 309 (335)
.. -..|..+|+++++... ..+|++++.||.|++|.
T Consensus 1364 ~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1364 GSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred CCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 00 0136667888886654 46899999999999994
No 209
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.80 E-value=3.4e-19 Score=141.85 Aligned_cols=265 Identities=19% Similarity=0.261 Sum_probs=206.9
Q ss_pred eeeecCC--ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecc
Q 019847 21 VIDWGRN--NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEG 98 (335)
Q Consensus 21 ~~~~~~~--~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 98 (335)
.++++.+ .++.++..|.|..+|+.++++...+.. ...|.++.|-.+.+++|++ ....++|||- .|..+..++.
T Consensus 134 ~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v---~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~-~GtElHClk~ 208 (545)
T KOG1272|consen 134 HLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV---METVRDVTFLHNEQFFAVA-QKKYVYVYDN-NGTELHCLKR 208 (545)
T ss_pred eeeecCCccEEEecCCccceeeeecccceeeeeeeh---hhhhhhhhhhcchHHHHhh-hhceEEEecC-CCcEEeehhh
Confidence 3566553 688888999999999999987665544 4678999999999888888 4668999994 5777777875
Q ss_pred cccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCc
Q 019847 99 HHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSS 178 (335)
Q Consensus 99 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 178 (335)
| ..|..+.|.| ...+|++++..|.++.-|+.+++. +..+....+.+..++-+|-+..+-+|...|+|.+|... .
T Consensus 209 ~-~~v~rLeFLP-yHfLL~~~~~~G~L~Y~DVS~Gkl-Va~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~---s 282 (545)
T KOG1272|consen 209 H-IRVARLEFLP-YHFLLVAASEAGFLKYQDVSTGKL-VASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPN---S 282 (545)
T ss_pred c-Cchhhhcccc-hhheeeecccCCceEEEeechhhh-hHHHHccCCccchhhcCCccceEEEcCCCceEEecCCC---C
Confidence 4 6799999999 889999999999999999997765 44455667888889999988899999999999999954 4
Q ss_pred ccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeec
Q 019847 179 SKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASG 258 (335)
Q Consensus 179 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (335)
..++..+..|.++|.++++.++|.+++++| .|..++|||+++...+.++..+.+...+++|..|...+ +
T Consensus 283 kePLvKiLcH~g~V~siAv~~~G~YMaTtG---~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~SqkglLA~--------~ 351 (545)
T KOG1272|consen 283 KEPLVKILCHRGPVSSIAVDRGGRYMATTG---LDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKGLLAL--------S 351 (545)
T ss_pred cchHHHHHhcCCCcceEEECCCCcEEeecc---cccceeEeeeccccccceeecCCCccccccccccceee--------e
Confidence 566777788999999999999997666666 79999999999998888887777888899988775444 3
Q ss_pred CCCeEEEEEC-CCCc--eeecc--cCCCCceeEeEEcCCCCEEEEEeCCCcEEE
Q 019847 259 DGNKLCLWKY-PNMT--KVGEL--QSSNSRILDLSQSPDGLTVATAGADETIRF 307 (335)
Q Consensus 259 ~~~~i~i~d~-~~~~--~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i 307 (335)
....+.||.- -.+. ....+ ....+.|..+.|.|-...|-.|..-|.-.+
T Consensus 352 ~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsi 405 (545)
T KOG1272|consen 352 YGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSI 405 (545)
T ss_pred cCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeE
Confidence 4788999952 2211 11111 122347999999997767766655554333
No 210
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.80 E-value=3.5e-18 Score=126.65 Aligned_cols=253 Identities=15% Similarity=0.226 Sum_probs=180.7
Q ss_pred cccccccCCCCcccccceeeeecC-CceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCc
Q 019847 3 REARILDAPYLMEDYYSKVIDWGR-NNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSK 81 (335)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 81 (335)
.|...+... ++...++++.|.. ++++++..-|.|.+|++++......+++ .|...|+.+.--|+ ..+.+-+.|+.
T Consensus 3 pPdP~fvLR--p~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~-~g~~~it~lq~~p~-d~l~tqgRd~~ 78 (323)
T KOG0322|consen 3 PPDPFFVLR--PHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRL-FGRLFITNLQSIPN-DSLDTQGRDPL 78 (323)
T ss_pred CCCCeeEec--cccchheehhhccchhhhcccccceEEEEEeecCccchhhhh-hccceeeceeecCC-cchhhcCCCce
Confidence 344433333 5556678888887 4788888999999999999887665553 36778888888887 46777788999
Q ss_pred EEEEeCCCceeEee-------------------------e----------------------------cccccceeEeee
Q 019847 82 LQLWDAETSKLVRN-------------------------L----------------------------EGHHRRVATSSW 108 (335)
Q Consensus 82 i~iw~~~~~~~~~~-------------------------~----------------------------~~~~~~v~~~~~ 108 (335)
+.+|++.-+..+.. . .+..+.+.+..+
T Consensus 79 L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~ 158 (323)
T KOG0322|consen 79 LILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDK 158 (323)
T ss_pred EEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeec
Confidence 99998754211100 0 011234555554
Q ss_pred cCCCC--CEEEEeeCCCcEEEEecccCCeee---------EEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCC
Q 019847 109 NHWNG--HILTSGSKDKSIINHDVRVSNNVT---------SCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMS 177 (335)
Q Consensus 109 ~~~~~--~~l~~~~~dg~i~~~d~~~~~~~~---------~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 177 (335)
....+ -++++|.++|.+.+||+.++...+ .....|..+|.++.+.+.-..=++|+.+..+..|.++...
T Consensus 159 ~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~ 238 (323)
T KOG0322|consen 159 DHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHST 238 (323)
T ss_pred cccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeecccc
Confidence 33222 357788899999999998764322 2344689999999998865556777888889999987542
Q ss_pred cc-cceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec-CCcEeEEEeCCCCceeeeeeeee
Q 019847 178 SS-KSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA-KAQICGLEWNRHHKEILSGHGFS 255 (335)
Q Consensus 178 ~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 255 (335)
.. +.-....-.+-.+..+..-||++ ++++++ .|+.||+|+.++.+++..++- ...+.+++|+|+...++++
T Consensus 239 gslq~~~e~~lknpGv~gvrIRpD~K-IlATAG--WD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaa---- 311 (323)
T KOG0322|consen 239 GSLQIRKEITLKNPGVSGVRIRPDGK-ILATAG--WDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAA---- 311 (323)
T ss_pred CcccccceEEecCCCccceEEccCCc-EEeecc--cCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhc----
Confidence 11 11111222344588899999995 777776 999999999999999988875 4689999999998888776
Q ss_pred eecCCCeEEEEEC
Q 019847 256 ASGDGNKLCLWKY 268 (335)
Q Consensus 256 ~~~~~~~i~i~d~ 268 (335)
+.|+.|.+|++
T Consensus 312 --skD~rISLWkL 322 (323)
T KOG0322|consen 312 --SKDARISLWKL 322 (323)
T ss_pred --cCCceEEeeec
Confidence 88999999986
No 211
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.80 E-value=4.8e-16 Score=118.43 Aligned_cols=244 Identities=14% Similarity=0.152 Sum_probs=165.4
Q ss_pred CceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccc--cceeEeeecCCCCCEEEEeeCC------CcEEEEecc
Q 019847 60 YPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHH--RRVATSSWNHWNGHILTSGSKD------KSIINHDVR 131 (335)
Q Consensus 60 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~~~~~d------g~i~~~d~~ 131 (335)
...+++|+.|..-+++|..+| .+||+.+.-+.....+.+. -.+..+-|- .+-+.++|+.+ +.+.|||=.
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR--~N~laLVGGg~~pky~pNkviIWDD~ 83 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFR--SNYLALVGGGSRPKYPPNKVIIWDDL 83 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhh--hceEEEecCCCCCCCCCceEEEEecc
Confidence 345699999999999998776 9999987643322222222 334444452 22233344433 479999944
Q ss_pred cCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCC
Q 019847 132 VSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGR 211 (335)
Q Consensus 132 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~ 211 (335)
...+ ...+ ....+|.++.+.++ .+++.- ++.|++|...+. .+.++.+.....|=--++..|....-+.+.-|.
T Consensus 84 k~~~-i~el-~f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n--~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~ 156 (346)
T KOG2111|consen 84 KERC-IIEL-SFNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDN--PKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGF 156 (346)
T ss_pred cCcE-EEEE-EeccceeeEEEcCC--eEEEEe-cCeEEEEEcCCC--hhheeeeecccCCCceEeecCCCCceEEEcCCC
Confidence 3333 3322 47889999999876 555554 678999997632 333443332222211333444433333333356
Q ss_pred CCCeEEEEECCCCce---EEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCC--CCceeE
Q 019847 212 EDGCIKIWNVQKGTC---IHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSS--NSRILD 286 (335)
Q Consensus 212 ~d~~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~--~~~i~~ 286 (335)
.-|.|++-|+...+. .....+...|.+++.+.+|..++++. ...--|+|||..+++++.+++.. ...|.+
T Consensus 157 k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaS-----tkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~ 231 (346)
T KOG2111|consen 157 KTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATAS-----TKGTLIRIFDTEDGTLLQELRRGVDRADIYC 231 (346)
T ss_pred ccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEec-----cCcEEEEEEEcCCCcEeeeeecCCchheEEE
Confidence 789999999987655 34445677999999999999999873 34445899999999999998743 346999
Q ss_pred eEEcCCCCEEEEEeCCCcEEEEecCCCCCCCC
Q 019847 287 LSQSPDGLTVATAGADETIRFWEAFGPSGDED 318 (335)
Q Consensus 287 ~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~ 318 (335)
++|||+..+|+++|+-|+++|+.+........
T Consensus 232 iaFSp~~s~LavsSdKgTlHiF~l~~~~~~~~ 263 (346)
T KOG2111|consen 232 IAFSPNSSWLAVSSDKGTLHIFSLRDTENTED 263 (346)
T ss_pred EEeCCCccEEEEEcCCCeEEEEEeecCCCCcc
Confidence 99999999999999999999999998654443
No 212
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=2.1e-17 Score=144.07 Aligned_cols=233 Identities=19% Similarity=0.318 Sum_probs=170.5
Q ss_pred ceEEEecCCeEEEEEecCC---ceeeEE---eecC----CCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeec
Q 019847 28 NVLAVALGPVLFLWKWENG---KVKKLL---QVPG----EDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLE 97 (335)
Q Consensus 28 ~~~~~~~~~~i~vw~~~~~---~~~~~~---~~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 97 (335)
-+++++.||.|+||+--.. +.+-+. .+.+ ..+.=.-++|..+..+|++++.-..|+|||.+....+..+.
T Consensus 1125 LlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP 1204 (1387)
T KOG1517|consen 1125 LLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIP 1204 (1387)
T ss_pred heeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecc
Confidence 5788899999999984322 111111 1111 11122446787766677777768899999999888877765
Q ss_pred c-cccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCe--eeEEeecCCCC--EEEEEeecCCC-EEEEEeCCCeEEEE
Q 019847 98 G-HHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNN--VTSCIKAHSGE--VCGLKWSNEGN-LLASGGDDNVVRIW 171 (335)
Q Consensus 98 ~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~--~~~~~~~~~~~--i~~~~~~~~~~-~l~~~~~dg~i~iw 171 (335)
. ....++++.-+...++.+++|..||.|++||.+.... .+...+.|... |..+.+.+.|- .|++|+.||.|++|
T Consensus 1205 ~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~ 1284 (1387)
T KOG1517|consen 1205 YGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLL 1284 (1387)
T ss_pred cCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEE
Confidence 3 4567888877665789999999999999999986554 56777888887 99999998654 59999999999999
Q ss_pred EccCCCcccceeeccCCC--C-CeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec--------CCcEeEEE
Q 019847 172 ERSKMSSSKSLHRFTDHC--G-GVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA--------KAQICGLE 240 (335)
Q Consensus 172 d~~~~~~~~~~~~~~~~~--~-~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~--------~~~~~~~~ 240 (335)
|++... .........|. + ..+++..+++.+ ++++|+ . +.|+||++. |+.+..++. ...+.+++
T Consensus 1285 DlR~~~-~e~~~~iv~~~~yGs~lTal~VH~hap-iiAsGs--~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~ 1358 (1387)
T KOG1517|consen 1285 DLRMSS-KETFLTIVAHWEYGSALTALTVHEHAP-IIASGS--A-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLA 1358 (1387)
T ss_pred ecccCc-ccccceeeeccccCccceeeeeccCCC-eeeecC--c-ceEEEEecC-hhhhcccccCcccccCcCCCcceee
Confidence 999752 23333333332 3 489999999885 888875 4 999999986 444443332 23579999
Q ss_pred eCCCCceeeeeeeeeeecCCCeEEEEECCCCc
Q 019847 241 WNRHHKEILSGHGFSASGDGNKLCLWKYPNMT 272 (335)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~ 272 (335)
|+|....+++| ..|..|.||......
T Consensus 1359 FHP~~~llAaG------~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1359 FHPHRLLLAAG------SADSTVSIYSCEKPR 1384 (1387)
T ss_pred ecchhHhhhhc------cCCceEEEeecCCcC
Confidence 99999999888 679999999876543
No 213
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.79 E-value=2.9e-17 Score=123.69 Aligned_cols=163 Identities=18% Similarity=0.310 Sum_probs=119.1
Q ss_pred EEEEeecCCCEEEEEeC----------CCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEE
Q 019847 148 CGLKWSNEGNLLASGGD----------DNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIK 217 (335)
Q Consensus 148 ~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~ 217 (335)
..+.|+|+|++|+.-.. -|...+|.++..........+. ..++|.+++|+|++..++++. |..++.|.
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~-~~~~I~~~~WsP~g~~favi~-g~~~~~v~ 86 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELK-KEGPIHDVAWSPNGNEFAVIY-GSMPAKVT 86 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeecc-CCCceEEEEECcCCCEEEEEE-ccCCcccE
Confidence 45889999987776543 1345666665433222222222 345799999999998876665 44678999
Q ss_pred EEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEE
Q 019847 218 IWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVA 297 (335)
Q Consensus 218 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 297 (335)
+||++ ++.+..+. ...+..+.|+|+|++++.+.. +...|.+.+||.++.+.+.+.... .++.++|+|||++|+
T Consensus 87 lyd~~-~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~---~n~~G~l~~wd~~~~~~i~~~~~~--~~t~~~WsPdGr~~~ 159 (194)
T PF08662_consen 87 LYDVK-GKKIFSFG-TQPRNTISWSPDGRFLVLAGF---GNLNGDLEFWDVRKKKKISTFEHS--DATDVEWSPDGRYLA 159 (194)
T ss_pred EEcCc-ccEeEeec-CCCceEEEECCCCCEEEEEEc---cCCCcEEEEEECCCCEEeeccccC--cEEEEEEcCCCCEEE
Confidence 99997 66666665 456788999999999988631 234588999999998888776533 478999999999999
Q ss_pred EEeC------CCcEEEEecCCCCCCCCc
Q 019847 298 TAGA------DETIRFWEAFGPSGDEDS 319 (335)
Q Consensus 298 ~~~~------dg~v~iw~~~~~~~~~~~ 319 (335)
+++. |+.++||++.+.......
T Consensus 160 ta~t~~r~~~dng~~Iw~~~G~~l~~~~ 187 (194)
T PF08662_consen 160 TATTSPRLRVDNGFKIWSFQGRLLYKKP 187 (194)
T ss_pred EEEeccceeccccEEEEEecCeEeEecc
Confidence 9874 788999999876544433
No 214
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.79 E-value=1.4e-16 Score=136.27 Aligned_cols=240 Identities=16% Similarity=0.135 Sum_probs=159.9
Q ss_pred CeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECC---CcEEEEeCCCceeEeeecccccceeEeeecCCC
Q 019847 36 PVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMD---SKLQLWDAETSKLVRNLEGHHRRVATSSWNHWN 112 (335)
Q Consensus 36 ~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~ 112 (335)
..|.+||.+...... +..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++... +....+......|+| +
T Consensus 184 ~~l~i~D~~g~~~~~---lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~Sp-D 258 (433)
T PRK04922 184 YALQVADSDGYNPQT---ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSP-D 258 (433)
T ss_pred EEEEEECCCCCCceE---eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECC-C
Confidence 368899987655433 33466788999999999999987743 469999998876533 333445556789999 7
Q ss_pred CCEE-EEeeCCC--cEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeC-CCe--EEEEEccCCCcccceeecc
Q 019847 113 GHIL-TSGSKDK--SIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGD-DNV--VRIWERSKMSSSKSLHRFT 186 (335)
Q Consensus 113 ~~~l-~~~~~dg--~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~--i~iwd~~~~~~~~~~~~~~ 186 (335)
++.+ ++.+.+| .|++||+.++.. ..+..+.......+|+||++.|+..+. +|. |+++|+..+. ...+.
T Consensus 259 G~~l~~~~s~~g~~~Iy~~d~~~g~~--~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~----~~~lt 332 (433)
T PRK04922 259 GRRLALTLSRDGNPEIYVMDLGSRQL--TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS----AERLT 332 (433)
T ss_pred CCEEEEEEeCCCCceEEEEECCCCCe--EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC----eEEee
Confidence 7655 4556665 589999876542 334455555677899999998887764 444 6666655432 12222
Q ss_pred CCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEE
Q 019847 187 DHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLW 266 (335)
Q Consensus 187 ~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~ 266 (335)
.+.......+|+|+|+.++.+........|.+||+.+++.. .+..........|+|+|+.++.... ....+.+.++
T Consensus 333 ~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~~~~~p~~spdG~~i~~~s~---~~g~~~L~~~ 408 (433)
T PRK04922 333 FQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGSLDESPSFAPNGSMVLYATR---EGGRGVLAAV 408 (433)
T ss_pred cCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCCCCCCCceECCCCCEEEEEEe---cCCceEEEEE
Confidence 22234457899999988877653111236999999887755 4443334556799999998876521 1234568888
Q ss_pred ECCCCceeecccCCCCceeEeEEcC
Q 019847 267 KYPNMTKVGELQSSNSRILDLSQSP 291 (335)
Q Consensus 267 d~~~~~~~~~~~~~~~~i~~~~~~~ 291 (335)
+... .....+..+.+.+...+|+|
T Consensus 409 ~~~g-~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 409 STDG-RVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred ECCC-CceEEcccCCCCCCCCccCC
Confidence 8754 44555555666777888876
No 215
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.79 E-value=9.8e-17 Score=137.14 Aligned_cols=236 Identities=18% Similarity=0.169 Sum_probs=154.0
Q ss_pred CcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCC---CcEEEEecccCCeeeEEeecCCCCEEEEEeecCC
Q 019847 80 SKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKD---KSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEG 156 (335)
Q Consensus 80 g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~ 156 (335)
..|.+||... ...+.+..+...+.+.+|+| +++.|+..+.+ ..|++||+.++.. ..+..+.+...+.+|+|+|
T Consensus 184 ~~l~i~D~~g-~~~~~lt~~~~~v~~p~wSp-Dg~~la~~s~~~~~~~l~~~dl~~g~~--~~l~~~~g~~~~~~~SpDG 259 (433)
T PRK04922 184 YALQVADSDG-YNPQTILRSAEPILSPAWSP-DGKKLAYVSFERGRSAIYVQDLATGQR--ELVASFRGINGAPSFSPDG 259 (433)
T ss_pred EEEEEECCCC-CCceEeecCCCccccccCCC-CCCEEEEEecCCCCcEEEEEECCCCCE--EEeccCCCCccCceECCCC
Confidence 3689999864 44455666778899999999 88888877643 4699999976553 2233445555678999999
Q ss_pred CEEEE-EeCCC--eEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCC--eEEEEECCCCceEEEee
Q 019847 157 NLLAS-GGDDN--VVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDG--CIKIWNVQKGTCIHGID 231 (335)
Q Consensus 157 ~~l~~-~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~--~i~i~d~~~~~~~~~~~ 231 (335)
+.|+. .+.+| .|++||+..+. ...+..+.......+|+|+++.++.+.. .++ .|+++|+.+++......
T Consensus 260 ~~l~~~~s~~g~~~Iy~~d~~~g~----~~~lt~~~~~~~~~~~spDG~~l~f~sd--~~g~~~iy~~dl~~g~~~~lt~ 333 (433)
T PRK04922 260 RRLALTLSRDGNPEIYVMDLGSRQ----LTRLTNHFGIDTEPTWAPDGKSIYFTSD--RGGRPQIYRVAASGGSAERLTF 333 (433)
T ss_pred CEEEEEEeCCCCceEEEEECCCCC----eEECccCCCCccceEECCCCCEEEEEEC--CCCCceEEEEECCCCCeEEeec
Confidence 97764 45555 59999987643 3334445455567899999988877753 444 47777887766443322
Q ss_pred cCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCC---CcEEEE
Q 019847 232 AKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGAD---ETIRFW 308 (335)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~v~iw 308 (335)
........+|+|+|+.++.... ......|.+||+.+++.. .+. +........|+|||++|+..+.+ +.+.++
T Consensus 334 ~g~~~~~~~~SpDG~~Ia~~~~---~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~ 408 (433)
T PRK04922 334 QGNYNARASVSPDGKKIAMVHG---SGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAV 408 (433)
T ss_pred CCCCccCEEECCCCCEEEEEEC---CCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEE
Confidence 3334557899999999876521 122347999999887765 332 22234567999999988776653 357777
Q ss_pred ecCCCCCCCCcccccccccccee
Q 019847 309 EAFGPSGDEDSVSHLAGLVSLKT 331 (335)
Q Consensus 309 ~~~~~~~~~~~~~~~~~i~~~~~ 331 (335)
++.+.. ......+...+....+
T Consensus 409 ~~~g~~-~~~l~~~~g~~~~p~w 430 (433)
T PRK04922 409 STDGRV-RQRLVSADGEVREPAW 430 (433)
T ss_pred ECCCCc-eEEcccCCCCCCCCcc
Confidence 775432 2223233344444443
No 216
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.79 E-value=3.4e-19 Score=151.38 Aligned_cols=235 Identities=17% Similarity=0.296 Sum_probs=175.5
Q ss_pred ceeeeec--CCceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeee
Q 019847 19 SKVIDWG--RNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNL 96 (335)
Q Consensus 19 ~~~~~~~--~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 96 (335)
+.|..++ +.++++++.|..++||..+++.+ .....||...|+.++.+.+..++++++.|..|++|.+.++.++..+
T Consensus 193 Vyca~fDrtg~~Iitgsdd~lvKiwS~et~~~--lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvL 270 (1113)
T KOG0644|consen 193 VYCAIFDRTGRYIITGSDDRLVKIWSMETARC--LASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVL 270 (1113)
T ss_pred eeeeeeccccceEeecCccceeeeeeccchhh--hccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHH
Confidence 3344444 45788888999999999888876 4567799999999999999999999999999999999999999999
Q ss_pred cccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEE---ee-cCCCCEEE-----------------------
Q 019847 97 EGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSC---IK-AHSGEVCG----------------------- 149 (335)
Q Consensus 97 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~---~~-~~~~~i~~----------------------- 149 (335)
.+|++.|++++|+| - .+.+.||++++||.+-... ... .. .....+.+
T Consensus 271 rghtgavtaiafsP-~----~sss~dgt~~~wd~r~~~~-~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e 344 (1113)
T KOG0644|consen 271 RGHTGAVTAIAFSP-R----ASSSDDGTCRIWDARLEPR-IYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHE 344 (1113)
T ss_pred hccccceeeeccCc-c----ccCCCCCceEecccccccc-ccCCCCCCcccccceeeeeccccccccccccCCcccccch
Confidence 99999999999999 2 2778999999999871110 000 00 00111112
Q ss_pred ---EEeecCCCEEEE-----------EeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCe
Q 019847 150 ---LKWSNEGNLLAS-----------GGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGC 215 (335)
Q Consensus 150 ---~~~~~~~~~l~~-----------~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~ 215 (335)
++|....-.+++ +-.+-.+.+|++.+ +...+...+|..++..+.++|.+..+..+++ .||.
T Consensus 345 ~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~---g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag--~dgs 419 (1113)
T KOG0644|consen 345 FEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYT---GQLLHNLMGHSDEVYVLDVHPFNPRIAMSAG--YDGS 419 (1113)
T ss_pred hhHhhhhccceEEEeccccccccceeeeeeeEeeeeeccc---chhhhhhcccccceeeeeecCCCcHhhhhcc--CCCc
Confidence 222222222222 22344566777555 3446677789999999999999999988887 9999
Q ss_pred EEEEECCCCceEEEee-cCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCc
Q 019847 216 IKIWNVQKGTCIHGID-AKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMT 272 (335)
Q Consensus 216 i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~ 272 (335)
..|||+-.|.+++.+. .+..+..-+|+++|..++.. .+-|.++|.....++
T Consensus 420 t~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~ls------d~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 420 TIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALS------DDHGQLYILGTGQSK 471 (1113)
T ss_pred eEeeecccCCcceeeecccceeeccccCCCCceEecC------CCCCceEEeccCCCc
Confidence 9999999998877664 46788899999999988765 456777777654443
No 217
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=5.4e-17 Score=125.65 Aligned_cols=240 Identities=18% Similarity=0.264 Sum_probs=166.3
Q ss_pred CCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeec-ccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeee
Q 019847 59 DYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLE-GHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVT 137 (335)
Q Consensus 59 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~ 137 (335)
..+..++|++.-..+|++..|-.|++||-.. +....++ .....|++++|-|.....|+.|+..| |.+|.........
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~ 176 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNAN 176 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccc
Confidence 4578899999777788999999999999776 4444444 34578999999998888888887654 8889764322111
Q ss_pred -------------EEeecCCCCEEEEEeecCCCEEEEEeC-CCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCc
Q 019847 138 -------------SCIKAHSGEVCGLKWSNEGNLLASGGD-DNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVN 203 (335)
Q Consensus 138 -------------~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 203 (335)
....+| .+|+++.|++||..+++++. |..|.|||..++.. .++. ....+.+.-+.|+||+..
T Consensus 177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~-~pL~--~~glgg~slLkwSPdgd~ 252 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQK-IPLI--PKGLGGFSLLKWSPDGDV 252 (445)
T ss_pred cccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCc-cccc--ccCCCceeeEEEcCCCCE
Confidence 111233 68999999999999999875 56899999887543 2232 224567889999999999
Q ss_pred EEEEecCCCCCeEEEEECC-CCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCC-----------
Q 019847 204 VLATGGGREDGCIKIWNVQ-KGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNM----------- 271 (335)
Q Consensus 204 ~~~~~~g~~d~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~----------- 271 (335)
++++. -|+..++|+.. +.....-.-..+.+...+|+|.|..++... .+.-++|.+.-.
T Consensus 253 lfaAt---~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~-------sgsp~lysl~f~~~~~~~~~~~~ 322 (445)
T KOG2139|consen 253 LFAAT---CDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFAC-------SGSPRLYSLTFDGEDSVFLRPQS 322 (445)
T ss_pred EEEec---ccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEE-------cCCceEEEEeecCCCccccCccc
Confidence 88877 59999999543 344444444566899999999999987653 233333332110
Q ss_pred ----ceeecc-----cC----CCCceeEeEEcCCCCEEEEEeCCC--------cEEEEecCCCC
Q 019847 272 ----TKVGEL-----QS----SNSRILDLSQSPDGLTVATAGADE--------TIRFWEAFGPS 314 (335)
Q Consensus 272 ----~~~~~~-----~~----~~~~i~~~~~~~~~~~l~~~~~dg--------~v~iw~~~~~~ 314 (335)
.++..+ .. -.+++.+++|.|.|.+||+.-+.+ .|.+||.....
T Consensus 323 ~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp 386 (445)
T KOG2139|consen 323 IKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSP 386 (445)
T ss_pred ceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccC
Confidence 011111 11 145788999999999999875433 35667665543
No 218
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.78 E-value=1.1e-15 Score=130.26 Aligned_cols=236 Identities=12% Similarity=0.086 Sum_probs=155.5
Q ss_pred cEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEee---CCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCC
Q 019847 81 KLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGS---KDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGN 157 (335)
Q Consensus 81 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 157 (335)
.|.++|...... +.+..+...+...+|+| +++.|+..+ .+..+.+|++.+++. ..+....+.+...+|+|||+
T Consensus 180 ~l~~~d~dg~~~-~~lt~~~~~~~~p~wSP-DG~~la~~s~~~g~~~i~i~dl~~G~~--~~l~~~~~~~~~~~~SPDG~ 255 (429)
T PRK03629 180 ELRVSDYDGYNQ-FVVHRSPQPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAV--RQVASFPRHNGAPAFSPDGS 255 (429)
T ss_pred eEEEEcCCCCCC-EEeecCCCceeeeEEcC-CCCEEEEEEecCCCcEEEEEECCCCCe--EEccCCCCCcCCeEECCCCC
Confidence 689999875543 34445667899999999 888877654 235799999976542 22223344456789999999
Q ss_pred EEEEE-eCCC--eEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCC--eEEEEECCCCceEEEeec
Q 019847 158 LLASG-GDDN--VVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDG--CIKIWNVQKGTCIHGIDA 232 (335)
Q Consensus 158 ~l~~~-~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~--~i~i~d~~~~~~~~~~~~ 232 (335)
.|+.. +.+| .|++||+.+.. ...+..+...+....|+|+++.++.+.. .++ .|+++|+.+++.......
T Consensus 256 ~La~~~~~~g~~~I~~~d~~tg~----~~~lt~~~~~~~~~~wSPDG~~I~f~s~--~~g~~~Iy~~d~~~g~~~~lt~~ 329 (429)
T PRK03629 256 KLAFALSKTGSLNLYVMDLASGQ----IRQVTDGRSNNTEPTWFPDSQNLAYTSD--QAGRPQVYKVNINGGAPQRITWE 329 (429)
T ss_pred EEEEEEcCCCCcEEEEEECCCCC----EEEccCCCCCcCceEECCCCCEEEEEeC--CCCCceEEEEECCCCCeEEeecC
Confidence 88865 3344 58889987542 2333334456788999999988877653 344 455567776655433233
Q ss_pred CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCc---EEEEe
Q 019847 233 KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADET---IRFWE 309 (335)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~---v~iw~ 309 (335)
........|+|+|+.++.... ......|.+||+.+++.. .+... .......|+|||++|+.++.++. +.+++
T Consensus 330 ~~~~~~~~~SpDG~~Ia~~~~---~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~ 404 (429)
T PRK03629 330 GSQNQDADVSSDGKFMVMVSS---NGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVS 404 (429)
T ss_pred CCCccCEEECCCCCEEEEEEc---cCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEE
Confidence 344567899999999876421 122356889999887643 23221 12346789999999999988765 66777
Q ss_pred cCCCCCCCCccccccccccceec
Q 019847 310 AFGPSGDEDSVSHLAGLVSLKTS 332 (335)
Q Consensus 310 ~~~~~~~~~~~~~~~~i~~~~~~ 332 (335)
+.+... .....|...+....++
T Consensus 405 ~~G~~~-~~l~~~~~~~~~p~Ws 426 (429)
T PRK03629 405 TDGRFK-ARLPATDGQVKFPAWS 426 (429)
T ss_pred CCCCCe-EECccCCCCcCCcccC
Confidence 755433 3344566666666554
No 219
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.78 E-value=2.9e-16 Score=133.81 Aligned_cols=245 Identities=13% Similarity=0.094 Sum_probs=157.9
Q ss_pred CeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECC---CcEEEEeCCCceeEeeecccccceeEeeecCCC
Q 019847 36 PVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMD---SKLQLWDAETSKLVRNLEGHHRRVATSSWNHWN 112 (335)
Q Consensus 36 ~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~ 112 (335)
..|.++|.+...... +..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++... +....+......|+| +
T Consensus 176 ~~L~~~D~dG~~~~~---l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SP-D 250 (427)
T PRK02889 176 YQLQISDADGQNAQS---ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSP-D 250 (427)
T ss_pred cEEEEECCCCCCceE---eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECC-C
Confidence 367777765443322 33566788999999999999887643 359999999887543 333445667899999 7
Q ss_pred CCEEE-EeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeC-CCeEEEEEccCCCcccceeeccCCCC
Q 019847 113 GHILT-SGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGD-DNVVRIWERSKMSSSKSLHRFTDHCG 190 (335)
Q Consensus 113 ~~~l~-~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~ 190 (335)
++.|+ +.+.+|...+|.++........+..+........|+|||+.|+..+. +|...+|.+...... ...+.....
T Consensus 251 G~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~--~~~lt~~g~ 328 (427)
T PRK02889 251 GRTLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA--AQRVTFTGS 328 (427)
T ss_pred CCEEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc--eEEEecCCC
Confidence 77665 56778877777654332223444445555677899999998887664 466667765422111 111111223
Q ss_pred CeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCC
Q 019847 191 GVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPN 270 (335)
Q Consensus 191 ~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~ 270 (335)
......|+|+|+.++.+.....+..|.+||+.+++... +..........|+|+|+.++.... ......+.+.+. +
T Consensus 329 ~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~~~~~~p~~spdg~~l~~~~~---~~g~~~l~~~~~-~ 403 (427)
T PRK02889 329 YNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDTTRDESPSFAPNGRYILYATQ---QGGRSVLAAVSS-D 403 (427)
T ss_pred CcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCCCCccCceECCCCCEEEEEEe---cCCCEEEEEEEC-C
Confidence 34467899999887776531012379999998887543 333334467899999999887532 011234666676 4
Q ss_pred CceeecccCCCCceeEeEEcCC
Q 019847 271 MTKVGELQSSNSRILDLSQSPD 292 (335)
Q Consensus 271 ~~~~~~~~~~~~~i~~~~~~~~ 292 (335)
+.....+..+.+.+...+|+|-
T Consensus 404 g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 404 GRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred CCceEEeecCCCCCCCCccCCC
Confidence 5555566666677888888874
No 220
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.78 E-value=5.3e-16 Score=132.85 Aligned_cols=241 Identities=15% Similarity=0.163 Sum_probs=161.5
Q ss_pred CeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEEC---CCcEEEEeCCCceeEeeecccccceeEeeecCCC
Q 019847 36 PVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYM---DSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWN 112 (335)
Q Consensus 36 ~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~ 112 (335)
..|.++|.+...... +..|...+.+.+|+|||+.|+..+. +..|.+||+.+++.. .+..+.+.+....|+| +
T Consensus 182 ~~l~~~d~dg~~~~~---lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SP-D 256 (435)
T PRK05137 182 KRLAIMDQDGANVRY---LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSP-D 256 (435)
T ss_pred eEEEEECCCCCCcEE---EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECC-C
Confidence 378899886665432 3357778999999999999988763 468999999887653 4445666778899999 7
Q ss_pred CCEE-EEeeCCCc--EEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeC-CC--eEEEEEccCCCcccceeecc
Q 019847 113 GHIL-TSGSKDKS--IINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGD-DN--VVRIWERSKMSSSKSLHRFT 186 (335)
Q Consensus 113 ~~~l-~~~~~dg~--i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~ 186 (335)
++.| ++.+.++. |++||+.++. ...+..+........|+|||+.|+..+. +| .|+++|+.... .+.+.
T Consensus 257 G~~la~~~~~~g~~~Iy~~d~~~~~--~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~----~~~lt 330 (435)
T PRK05137 257 GRKVVMSLSQGGNTDIYTMDLRSGT--TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN----PRRIS 330 (435)
T ss_pred CCEEEEEEecCCCceEEEEECCCCc--eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC----eEEee
Confidence 7765 46666665 7777877544 3335556666778999999999887764 33 67888866432 22222
Q ss_pred CCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCC--CeEE
Q 019847 187 DHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDG--NKLC 264 (335)
Q Consensus 187 ~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~ 264 (335)
.+...+....|+|+|+.++.+.....+..|.+||+..+.. ..+.....+....|+|+|+.++.... ..+.. ..+.
T Consensus 331 ~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~~~~~~~p~~spDG~~i~~~~~--~~~~~~~~~L~ 407 (435)
T PRK05137 331 FGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTSGFLVEGPTWAPNGRVIMFFRQ--TPGSGGAPKLY 407 (435)
T ss_pred cCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccCCCCCCCCeECCCCCEEEEEEc--cCCCCCcceEE
Confidence 2345566788999998887765311234788899865543 44444445678899999998875421 00111 4688
Q ss_pred EEECCCCceeecccCCCCceeEeEEcCC
Q 019847 265 LWKYPNMTKVGELQSSNSRILDLSQSPD 292 (335)
Q Consensus 265 i~d~~~~~~~~~~~~~~~~i~~~~~~~~ 292 (335)
++|+..+.. ..+. ..+.+...+|+|-
T Consensus 408 ~~dl~g~~~-~~l~-~~~~~~~p~Wsp~ 433 (435)
T PRK05137 408 TVDLTGRNE-REVP-TPGDASDPAWSPL 433 (435)
T ss_pred EEECCCCce-EEcc-CCCCccCcccCCC
Confidence 888876554 3443 2334667777763
No 221
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=5.5e-18 Score=135.84 Aligned_cols=262 Identities=17% Similarity=0.240 Sum_probs=199.8
Q ss_pred EeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeec-ccccceeEeeecCCC-CCEEEEeeCCCcEEEEe
Q 019847 52 LQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLE-GHHRRVATSSWNHWN-GHILTSGSKDKSIINHD 129 (335)
Q Consensus 52 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~~~d 129 (335)
.++..|.+.|..+.|+..|..|++|+.|..|.+||...++.+..+. +|...|..-.|.|.. ..-+++++.||.+++=.
T Consensus 136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~ 215 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSE 215 (559)
T ss_pred hcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeee
Confidence 3567899999999999999999999999999999999887766654 688888888888753 45789999999999988
Q ss_pred cccCCee--eEEeecCCCCEEEEEeec-CCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCC---CeeEEEecCCCCc
Q 019847 130 VRVSNNV--TSCIKAHSGEVCGLKWSN-EGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCG---GVKALAWSPHQVN 203 (335)
Q Consensus 130 ~~~~~~~--~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~ 203 (335)
+...+.+ ...+..|.++|..++.-| ....|.+++.|+.+.-+|++.......+..-..+.. ....++..|...+
T Consensus 216 i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~ 295 (559)
T KOG1334|consen 216 ILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTN 295 (559)
T ss_pred eccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCcc
Confidence 7654433 345667999999999998 456789999999999999987655444444344444 5678999999999
Q ss_pred EEEEecCCCCCeEEEEECCCCce------EEEe-------ecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCC
Q 019847 204 VLATGGGREDGCIKIWNVQKGTC------IHGI-------DAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPN 270 (335)
Q Consensus 204 ~~~~~~g~~d~~i~i~d~~~~~~------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~ 270 (335)
.+++++ .|..+++||.+.-.. +..+ ..+..|++++|+.++..++++ -.|-.|+++.-.-
T Consensus 296 ~faVgG--~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaS------YnDe~IYLF~~~~ 367 (559)
T KOG1334|consen 296 EFAVGG--SDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLAS------YNDEDIYLFNKSM 367 (559)
T ss_pred ccccCC--hhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeee------ecccceEEecccc
Confidence 999987 999999999875322 1222 123469999999887777666 3588899884321
Q ss_pred --C----------ceeec-ccCCCC--ceeEeE-EcCCCCEEEEEeCCCcEEEEecCCCCCCCCccc
Q 019847 271 --M----------TKVGE-LQSSNS--RILDLS-QSPDGLTVATAGADETIRFWEAFGPSGDEDSVS 321 (335)
Q Consensus 271 --~----------~~~~~-~~~~~~--~i~~~~-~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~ 321 (335)
+ ..+.. +++|.. .|..+- |-|...|+++|+.-|.|.||+-.+++...-+.+
T Consensus 368 ~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~Meg 434 (559)
T KOG1334|consen 368 GDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEG 434 (559)
T ss_pred ccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhc
Confidence 2 12223 677765 355554 568889999999999999999888765544433
No 222
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=1.5e-17 Score=131.13 Aligned_cols=197 Identities=21% Similarity=0.259 Sum_probs=149.5
Q ss_pred eEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEe-
Q 019847 62 TSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCI- 140 (335)
Q Consensus 62 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~- 140 (335)
.+++|+++|..|++|+.||.+|||+......+.....|...|.++.|+| ++..|++-+.| ..+||+.+++..+....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 6899999999999999999999999888888888888999999999999 99999999999 99999999875433322
Q ss_pred ecCCCCEEEEEeecCC-----CEEEEEeCCCeEEEEEccCCCccc--ceeeccCCCCCeeEEEecCCCCcEEEEecCCCC
Q 019847 141 KAHSGEVCGLKWSNEG-----NLLASGGDDNVVRIWERSKMSSSK--SLHRFTDHCGGVKALAWSPHQVNVLATGGGRED 213 (335)
Q Consensus 141 ~~~~~~i~~~~~~~~~-----~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d 213 (335)
.........+.|+.++ ..++....-+.|+.||+....... ...........|.+++.+++|+ +++.|+ .|
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGk-f~AlGT--~d 302 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGK-FLALGT--MD 302 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCc-EEEEec--cC
Confidence 2334456778888776 333333445667777765322211 1222222345799999999996 666665 89
Q ss_pred CeEEEEECCCCceEEEeec--CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECC
Q 019847 214 GCIKIWNVQKGTCIHGIDA--KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYP 269 (335)
Q Consensus 214 ~~i~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~ 269 (335)
|.|.+++..+.+.++..+. ..-|+.+.|+|+.+++++- +.+....+..+.
T Consensus 303 GsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~sv------Ss~~~~~v~~l~ 354 (398)
T KOG0771|consen 303 GSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASV------SSDNEAAVTKLA 354 (398)
T ss_pred CcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCccccc------ccCCceeEEEEe
Confidence 9999999999888877763 4579999999999998874 456777666553
No 223
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=8e-17 Score=125.83 Aligned_cols=222 Identities=13% Similarity=0.174 Sum_probs=173.2
Q ss_pred ccceeeeecCCceEEEecCCeEEEEEecCCc--eeeEEeecCCCCCceEEEEcCCCCEE-EEEECC--CcEEEEeCCCce
Q 019847 17 YYSKVIDWGRNNVLAVALGPVLFLWKWENGK--VKKLLQVPGEDDYPTSVSWSHDAKTL-AVGYMD--SKLQLWDAETSK 91 (335)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~i~vw~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d--g~i~iw~~~~~~ 91 (335)
..+..+...++.++++..+|.+.+|..+.+. ..+...+..+ ..+..+.-++...++ |+|+.. ..+.+||+++.+
T Consensus 106 ~~I~gl~~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~ 184 (412)
T KOG3881|consen 106 KSIKGLKLADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSK 184 (412)
T ss_pred ccccchhhcCCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccce
Confidence 4455566677889999999999999998543 2223333222 456777777755554 558887 789999999886
Q ss_pred eEeeeccc---------ccceeEeeecCCC--CCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEE
Q 019847 92 LVRNLEGH---------HRRVATSSWNHWN--GHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLA 160 (335)
Q Consensus 92 ~~~~~~~~---------~~~v~~~~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 160 (335)
.+.+-+.- .-.++++.|.+ . ...|++++.-+.+++||.+.++.+...+.-.+.+++++...|++++++
T Consensus 185 qiw~aKNvpnD~L~LrVPvW~tdi~Fl~-g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy 263 (412)
T KOG3881|consen 185 QIWSAKNVPNDRLGLRVPVWITDIRFLE-GSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIY 263 (412)
T ss_pred eeeeccCCCCccccceeeeeeccceecC-CCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEE
Confidence 66554322 23577888988 5 789999999999999999988888888888889999999999999999
Q ss_pred EEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEE
Q 019847 161 SGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLE 240 (335)
Q Consensus 161 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 240 (335)
+|..-|.+..||++.... ....+.+-.+.|+++..+|.++ ++++++ .|+.+||+|+++.+++........++++.
T Consensus 264 ~gn~~g~l~~FD~r~~kl--~g~~~kg~tGsirsih~hp~~~-~las~G--LDRyvRIhD~ktrkll~kvYvKs~lt~il 338 (412)
T KOG3881|consen 264 TGNTKGQLAKFDLRGGKL--LGCGLKGITGSIRSIHCHPTHP-VLASCG--LDRYVRIHDIKTRKLLHKVYVKSRLTFIL 338 (412)
T ss_pred EecccchhheecccCcee--eccccCCccCCcceEEEcCCCc-eEEeec--cceeEEEeecccchhhhhhhhhccccEEE
Confidence 999999999999987533 2233677889999999999986 566665 89999999999988887777777788877
Q ss_pred eCCCC
Q 019847 241 WNRHH 245 (335)
Q Consensus 241 ~~~~~ 245 (335)
+.++-
T Consensus 339 ~~~~~ 343 (412)
T KOG3881|consen 339 LRDDV 343 (412)
T ss_pred ecCCc
Confidence 76554
No 224
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=2.1e-15 Score=123.28 Aligned_cols=291 Identities=14% Similarity=0.199 Sum_probs=202.0
Q ss_pred cccceeeeecC-CceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEE-----EC-----CCcEEE
Q 019847 16 DYYSKVIDWGR-NNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVG-----YM-----DSKLQL 84 (335)
Q Consensus 16 ~~~~~~~~~~~-~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-----~~-----dg~i~i 84 (335)
...++..++++ +++++.+.+..++|++..++...-... ...++++.|+|.+.+|.+= .. .-.+.+
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~~~~v~i~~~~~~~~~lt~~----~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v 109 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSDNQVVKVFEIATLKVVLCVE----LKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLV 109 (566)
T ss_pred CCcceeEEEcCCCcEEEEEcCCeEEEEEccCCcEEEEec----cceeeeeeecccccccccccccccccCCCCCCCceee
Confidence 34466777887 578888999999999998886322222 1268999999999998762 11 245789
Q ss_pred EeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecC--CCEEEE-
Q 019847 85 WDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNE--GNLLAS- 161 (335)
Q Consensus 85 w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~- 161 (335)
|+++++.....+......-++..|++ +. .+++--..+.+++|++...+.+... -|...|+.+.++|. ...+|+
T Consensus 110 ~~vet~~~~s~~q~k~Q~~W~~qfs~-dE-sl~arlv~nev~f~~~~~f~~~~~k--l~~~~i~~f~lSpgp~~~~vAvy 185 (566)
T KOG2315|consen 110 YNVETGVQRSQIQKKMQNGWVPQFSI-DE-SLAARLVSNEVQFYDLGSFKTIQHK--LSVSGITMLSLSPGPEPPFVAVY 185 (566)
T ss_pred eeeccceehhheehhhhcCccccccc-ch-hhhhhhhcceEEEEecCCccceeee--eeccceeeEEecCCCCCceEEEE
Confidence 99999666655554433337889986 44 3444455678999999865544433 36788999999985 334444
Q ss_pred ----EeCCCeEEEEEccCCCcccce--eeccCCCCCeeEEEecCCCCcEEEEecCCC---------CCeEEEEECCCCce
Q 019847 162 ----GGDDNVVRIWERSKMSSSKSL--HRFTDHCGGVKALAWSPHQVNVLATGGGRE---------DGCIKIWNVQKGTC 226 (335)
Q Consensus 162 ----~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~---------d~~i~i~d~~~~~~ 226 (335)
.+.-..++||..........+ +.+ ....-..+.|++-|.-|++..+-.- ..++++.+++...+
T Consensus 186 vPe~kGaPa~vri~~~~~~~~~~~~a~ksF--Fkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~ 263 (566)
T KOG2315|consen 186 VPEKKGAPASVRIYKYPEEGQHQPVANKSF--FKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESV 263 (566)
T ss_pred ccCCCCCCcEEEEeccccccccchhhhccc--cccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceE
Confidence 344568999987632222222 222 1222346889988877766654112 34788888886667
Q ss_pred EEEeecCCcEeEEEeCCCCceeeeeee------------------------------------ee--eecCCCeEEEEEC
Q 019847 227 IHGIDAKAQICGLEWNRHHKEILSGHG------------------------------------FS--ASGDGNKLCLWKY 268 (335)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------~~--~~~~~~~i~i~d~ 268 (335)
...+...++|.++.|+|++..+++..+ +. .+.-.|.+.|||+
T Consensus 264 ~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv 343 (566)
T KOG2315|consen 264 SVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDV 343 (566)
T ss_pred EEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEec
Confidence 777777889999999999987776533 11 1344689999999
Q ss_pred CCCceeecccCCCCceeEeEEcCCCCEEEEEeC------CCcEEEEecCCCCCCCC
Q 019847 269 PNMTKVGELQSSNSRILDLSQSPDGLTVATAGA------DETIRFWEAFGPSGDED 318 (335)
Q Consensus 269 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------dg~v~iw~~~~~~~~~~ 318 (335)
.+.+++..+..... +-+.|+|||++++|++. |+.++||+..+......
T Consensus 344 ~n~K~i~~~~a~~t--t~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~~ 397 (566)
T KOG2315|consen 344 PNRKLIAKFKAANT--TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHEK 397 (566)
T ss_pred cchhhccccccCCc--eEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceeehh
Confidence 99999888877654 55789999999999874 78899999987654443
No 225
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.76 E-value=4.1e-16 Score=138.06 Aligned_cols=257 Identities=16% Similarity=0.188 Sum_probs=176.8
Q ss_pred EEeecCCCCCceEEEEcCCC-CEEEEEECCCcEEEEeCCCc-------eeEeeecccccceeEeeecCCCCCEEEEeeCC
Q 019847 51 LLQVPGEDDYPTSVSWSHDA-KTLAVGYMDSKLQLWDAETS-------KLVRNLEGHHRRVATSSWNHWNGHILTSGSKD 122 (335)
Q Consensus 51 ~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 122 (335)
+..+..|...+..++.++.. .++++|+.||+|++||...- +...++......+.++...+ .++.+|.++.|
T Consensus 1041 VAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~-~~~~~Av~t~D 1119 (1431)
T KOG1240|consen 1041 VAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCG-NGDQFAVSTKD 1119 (1431)
T ss_pred eehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEecc-CCCeEEEEcCC
Confidence 45566788888899888755 99999999999999998642 22223333567788888888 89999999999
Q ss_pred CcEEEEecccCCee------eEEeec-CCCCEEE-EEeec-CCC-EEEEEeCCCeEEEEEccCCCcccceeeccCCCCCe
Q 019847 123 KSIINHDVRVSNNV------TSCIKA-HSGEVCG-LKWSN-EGN-LLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGV 192 (335)
Q Consensus 123 g~i~~~d~~~~~~~------~~~~~~-~~~~i~~-~~~~~-~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v 192 (335)
|.|++.+++..... .+.... ..+.+.+ -++.. .+. .++.+..-+.|..||++.......++. ....+.|
T Consensus 1120 G~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~-~~~hG~v 1198 (1431)
T KOG1240|consen 1120 GSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKN-QLRHGLV 1198 (1431)
T ss_pred CeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhc-Cccccce
Confidence 99999998752211 111111 2233333 33333 233 788888889999999987544333332 2345789
Q ss_pred eEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecC--CcEeEEEeCCCCc---eeeeeeeeeeecCCCeEEEEE
Q 019847 193 KALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAK--AQICGLEWNRHHK---EILSGHGFSASGDGNKLCLWK 267 (335)
Q Consensus 193 ~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~i~d 267 (335)
++++.+|.+. .+++|. ..|.+.+||++-+.++..+.++ .++..+..+|-.+ ..+++. .+..+.+.+|+
T Consensus 1199 TSi~idp~~~-WlviGt--s~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~----~~~~nevs~wn 1271 (1431)
T KOG1240|consen 1199 TSIVIDPWCN-WLVIGT--SRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAG----SSSNNEVSTWN 1271 (1431)
T ss_pred eEEEecCCce-EEEEec--CCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEec----ccCCCceeeee
Confidence 9999999986 556654 8999999999999998887654 4677776666544 333221 12688999999
Q ss_pred CCCCceeecccCC-------------------CCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCC
Q 019847 268 YPNMTKVGELQSS-------------------NSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGD 316 (335)
Q Consensus 268 ~~~~~~~~~~~~~-------------------~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~ 316 (335)
+.++.....+... .-......+...+.++.+|+.|..|+.||...+...
T Consensus 1272 ~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1272 METGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred cccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence 9887654443221 111122233444568999999999999999987665
No 226
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=6.2e-16 Score=126.70 Aligned_cols=245 Identities=19% Similarity=0.266 Sum_probs=177.2
Q ss_pred CCCCCceEEEEcCCCCEE-EEEECCCcEEEEeCCCceeEee----------------------------eccc-------
Q 019847 56 GEDDYPTSVSWSHDAKTL-AVGYMDSKLQLWDAETSKLVRN----------------------------LEGH------- 99 (335)
Q Consensus 56 ~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iw~~~~~~~~~~----------------------------~~~~------- 99 (335)
.+...-+.|..+|||+|+ |+|...-.|++||+.+..+... +.-|
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy 128 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY 128 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence 456777899999999987 5666788999999865422110 0001
Q ss_pred ----ccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccC
Q 019847 100 ----HRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSK 175 (335)
Q Consensus 100 ----~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 175 (335)
...-..++++...-. |+.++....|+-++++.+. .+..+....+.++++..++...+|++|+.+|.|..||.+.
T Consensus 129 ~~RIP~~GRDm~y~~~scD-ly~~gsg~evYRlNLEqGr-fL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ 206 (703)
T KOG2321|consen 129 RTRIPKFGRDMKYHKPSCD-LYLVGSGSEVYRLNLEQGR-FLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRD 206 (703)
T ss_pred eeecCcCCccccccCCCcc-EEEeecCcceEEEEccccc-cccccccccccceeeeecCccceEEecccCceEEEecchh
Confidence 112233444442333 4445556678888888554 4555666778999999999999999999999999999886
Q ss_pred CCccccee---eccCCCC-----CeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecC--CcEeEEEeCCC-
Q 019847 176 MSSSKSLH---RFTDHCG-----GVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAK--AQICGLEWNRH- 244 (335)
Q Consensus 176 ~~~~~~~~---~~~~~~~-----~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~--~~~~~~~~~~~- 244 (335)
......+. ....|.+ .|+++.|+.+| .-+++|. .+|.+.|||++..+++..-.+. -+|..+.|.+.
T Consensus 207 ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~g-L~~aVGt--s~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~ 283 (703)
T KOG2321|consen 207 KSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDG-LHVAVGT--STGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTD 283 (703)
T ss_pred hhhheeeecccccCCCccccccCcceEEEecCCc-eeEEeec--cCCcEEEEEcccCCceeecccCCccceeeecccccC
Confidence 44332222 1222333 39999999887 4555544 8999999999999988777664 47889999777
Q ss_pred -CceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCC
Q 019847 245 -HKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGP 313 (335)
Q Consensus 245 -~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~ 313 (335)
+..+++ .+...++|||-.+++....+.... .++.+++-|++-++++|-.++.+..|=+..-
T Consensus 284 ~q~~v~S-------~Dk~~~kiWd~~~Gk~~asiEpt~-~lND~C~~p~sGm~f~Ane~~~m~~yyiP~L 345 (703)
T KOG2321|consen 284 QQNKVVS-------MDKRILKIWDECTGKPMASIEPTS-DLNDFCFVPGSGMFFTANESSKMHTYYIPSL 345 (703)
T ss_pred CCceEEe-------cchHHhhhcccccCCceeeccccC-CcCceeeecCCceEEEecCCCcceeEEcccc
Confidence 344544 457889999999999988887654 4999999999999999999988887765543
No 227
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.76 E-value=4.1e-16 Score=117.48 Aligned_cols=164 Identities=18% Similarity=0.324 Sum_probs=117.2
Q ss_pred eEeeecCCCCCEEEEeeC----------CCcEEEEecccCCeeeEEee-cCCCCEEEEEeecCCCEEEEE--eCCCeEEE
Q 019847 104 ATSSWNHWNGHILTSGSK----------DKSIINHDVRVSNNVTSCIK-AHSGEVCGLKWSNEGNLLASG--GDDNVVRI 170 (335)
Q Consensus 104 ~~~~~~~~~~~~l~~~~~----------dg~i~~~d~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~--~~dg~i~i 170 (335)
..+.|++ +|+.|+.-.. -+...+|.++........+. ...++|.+++|+|+++.||+. ..++.|.+
T Consensus 9 ~~~~W~~-~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQP-SGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecc-cCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 4567888 6665554332 13456666644443333333 245579999999999987665 35679999
Q ss_pred EEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeee
Q 019847 171 WERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILS 250 (335)
Q Consensus 171 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (335)
||++ .+.+..+ +...++.+.|+|+|+++++++.|...|.|.+||.++.+.+...++. .+..++|+|+|+++++
T Consensus 88 yd~~----~~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~-~~t~~~WsPdGr~~~t 160 (194)
T PF08662_consen 88 YDVK----GKKIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS-DATDVEWSPDGRYLAT 160 (194)
T ss_pred EcCc----ccEeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccC-cEEEEEEcCCCCEEEE
Confidence 9986 3345544 3567889999999988887765556788999999998888887655 4789999999999998
Q ss_pred eeeeeeecCCCeEEEEECCCCceeec
Q 019847 251 GHGFSASGDGNKLCLWKYPNMTKVGE 276 (335)
Q Consensus 251 ~~~~~~~~~~~~i~i~d~~~~~~~~~ 276 (335)
.....-...|+.++||+.. |+++..
T Consensus 161 a~t~~r~~~dng~~Iw~~~-G~~l~~ 185 (194)
T PF08662_consen 161 ATTSPRLRVDNGFKIWSFQ-GRLLYK 185 (194)
T ss_pred EEeccceeccccEEEEEec-CeEeEe
Confidence 7543333468999999984 555544
No 228
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.76 E-value=1.9e-15 Score=128.79 Aligned_cols=239 Identities=16% Similarity=0.157 Sum_probs=149.0
Q ss_pred CcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCC---CcEEEEecccCCeeeEEeecCCCCEEEEEeecCC
Q 019847 80 SKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKD---KSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEG 156 (335)
Q Consensus 80 g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~ 156 (335)
..|.++|.. +...+.+..+...+.+.+|+| +++.|+..+.+ ..|.+||+.++.. ..+....+.+...+|+|||
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSP-DG~~la~~s~~~~~~~I~~~dl~~g~~--~~l~~~~g~~~~~~~SPDG 251 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSP-DGTKLAYVSFESKKPVVYVHDLATGRR--RVVANFKGSNSAPAWSPDG 251 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcC-CCCEEEEEEccCCCcEEEEEECCCCCE--EEeecCCCCccceEECCCC
Confidence 357777764 444455556778899999999 88888776643 3599999986653 2233345566789999999
Q ss_pred CEEEE-EeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEE--ECCCCceEEEeecC
Q 019847 157 NLLAS-GGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIW--NVQKGTCIHGIDAK 233 (335)
Q Consensus 157 ~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~--d~~~~~~~~~~~~~ 233 (335)
+.|+. .+.+|...+|.++... .....+..+........|+|||+.++.++. .++...+| ++.+++........
T Consensus 252 ~~la~~~~~~g~~~Iy~~d~~~--~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~--~~g~~~Iy~~~~~~g~~~~lt~~g 327 (427)
T PRK02889 252 RTLAVALSRDGNSQIYTVNADG--SGLRRLTQSSGIDTEPFFSPDGRSIYFTSD--RGGAPQIYRMPASGGAAQRVTFTG 327 (427)
T ss_pred CEEEEEEccCCCceEEEEECCC--CCcEECCCCCCCCcCeEEcCCCCEEEEEec--CCCCcEEEEEECCCCceEEEecCC
Confidence 98874 5677876666654221 123444445555667899999988877653 44555555 44555433222223
Q ss_pred CcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCC-c--EEEEec
Q 019847 234 AQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADE-T--IRFWEA 310 (335)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~--v~iw~~ 310 (335)
.......|+|+|++++.... .+.+..|.+||+.+++.... ... .......|+|||+.|+.++.++ . +.+.++
T Consensus 328 ~~~~~~~~SpDG~~Ia~~s~---~~g~~~I~v~d~~~g~~~~l-t~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~ 402 (427)
T PRK02889 328 SYNTSPRISPDGKLLAYISR---VGGAFKLYVQDLATGQVTAL-TDT-TRDESPSFAPNGRYILYATQQGGRSVLAAVSS 402 (427)
T ss_pred CCcCceEECCCCCEEEEEEc---cCCcEEEEEEECCCCCeEEc-cCC-CCccCceECCCCCEEEEEEecCCCEEEEEEEC
Confidence 33456789999999875421 01123799999988765433 222 2346789999999988877544 3 444445
Q ss_pred CCCCCCCCccccccccccceec
Q 019847 311 FGPSGDEDSVSHLAGLVSLKTS 332 (335)
Q Consensus 311 ~~~~~~~~~~~~~~~i~~~~~~ 332 (335)
.+ ........+.+.+....++
T Consensus 403 ~g-~~~~~l~~~~g~~~~p~ws 423 (427)
T PRK02889 403 DG-RIKQRLSVQGGDVREPSWG 423 (427)
T ss_pred CC-CceEEeecCCCCCCCCccC
Confidence 32 2222232344445544443
No 229
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.75 E-value=2.3e-14 Score=109.46 Aligned_cols=276 Identities=14% Similarity=0.194 Sum_probs=182.5
Q ss_pred eeeeecCC-ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEE-EECC------CcEEEEeCCCce
Q 019847 20 KVIDWGRN-NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAV-GYMD------SKLQLWDAETSK 91 (335)
Q Consensus 20 ~~~~~~~~-~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d------g~i~iw~~~~~~ 91 (335)
..++|+.+ ..++++.+...++|+.+.-+...........-.+..+-| ..++||. |+.+ ..+.|||=...+
T Consensus 9 lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIWDD~k~~ 86 (346)
T KOG2111|consen 9 LSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIWDDLKER 86 (346)
T ss_pred eEEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEEecccCc
Confidence 34889875 688888888999999876433222222111122333333 3445544 4332 479999977777
Q ss_pred eEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecC--CCCEEEEEeecCCCEEEE-EeCCCeE
Q 019847 92 LVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAH--SGEVCGLKWSNEGNLLAS-GGDDNVV 168 (335)
Q Consensus 92 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~-~~~dg~i 168 (335)
++.++. ...+|.++.+.+ +.+++.- .+.|++|...+..+....+... .....+++-..+..+||. |-.-|.|
T Consensus 87 ~i~el~-f~~~I~~V~l~r---~riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gqv 161 (346)
T KOG2111|consen 87 CIIELS-FNSEIKAVKLRR---DRIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQV 161 (346)
T ss_pred EEEEEE-eccceeeEEEcC---CeEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceE
Confidence 777776 678999999964 4555544 6789999988554444433322 233444433334445554 3456899
Q ss_pred EEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCe-EEEEECCCCceEEEeec---CCcEeEEEeCCC
Q 019847 169 RIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGC-IKIWNVQKGTCIHGIDA---KAQICGLEWNRH 244 (335)
Q Consensus 169 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~-i~i~d~~~~~~~~~~~~---~~~~~~~~~~~~ 244 (335)
+|-|+...... ....+..|.+.|.|++.+.+|. ++|+++ ..|+ |||||.++|+.+.+++. +..+.+++|+|+
T Consensus 162 Qi~dL~~~~~~-~p~~I~AH~s~Iacv~Ln~~Gt-~vATaS--tkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~ 237 (346)
T KOG2111|consen 162 QIVDLASTKPN-APSIINAHDSDIACVALNLQGT-LVATAS--TKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPN 237 (346)
T ss_pred EEEEhhhcCcC-CceEEEcccCceeEEEEcCCcc-EEEEec--cCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCC
Confidence 99998864432 3456678999999999999995 677765 5664 89999999999999975 457999999999
Q ss_pred CceeeeeeeeeeecCCCeEEEEECCCCceeec------------------------ccCCCCceeEeEEcCCCCEEEEEe
Q 019847 245 HKEILSGHGFSASGDGNKLCLWKYPNMTKVGE------------------------LQSSNSRILDLSQSPDGLTVATAG 300 (335)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~------------------------~~~~~~~i~~~~~~~~~~~l~~~~ 300 (335)
..++++. ++.|+++||.++....-.. ++-..+...-++|-.+.+.++..+
T Consensus 238 ~s~Lavs------SdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~ 311 (346)
T KOG2111|consen 238 SSWLAVS------SDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAIC 311 (346)
T ss_pred ccEEEEE------cCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEE
Confidence 9999887 8899999998865321111 111123344556766655666777
Q ss_pred CCCcEEEEecCC
Q 019847 301 ADETIRFWEAFG 312 (335)
Q Consensus 301 ~dg~v~iw~~~~ 312 (335)
.||.-+=+.+..
T Consensus 312 ~Dgsy~k~~f~~ 323 (346)
T KOG2111|consen 312 ADGSYYKFKFDP 323 (346)
T ss_pred eCCcEEEEEecc
Confidence 788765554443
No 230
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.75 E-value=4.6e-15 Score=127.11 Aligned_cols=223 Identities=13% Similarity=0.106 Sum_probs=151.8
Q ss_pred CcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeC---CCcEEEEecccCCeeeEEeecCCCCEEEEEeecCC
Q 019847 80 SKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSK---DKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEG 156 (335)
Q Consensus 80 g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~ 156 (335)
..|.++|.. +...+.+..+...+...+|+| +++.|+..+. +..|.+||+.++.. ..+..+.+.+...+|+|||
T Consensus 182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSp-DG~~lay~s~~~g~~~i~~~dl~~g~~--~~l~~~~g~~~~~~~SPDG 257 (435)
T PRK05137 182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSP-NRQEITYMSYANGRPRVYLLDLETGQR--ELVGNFPGMTFAPRFSPDG 257 (435)
T ss_pred eEEEEECCC-CCCcEEEecCCCCeEeeEECC-CCCEEEEEEecCCCCEEEEEECCCCcE--EEeecCCCcccCcEECCCC
Confidence 378888875 444556667888999999999 8888777653 46899999986653 3344566778889999999
Q ss_pred CEEE-EEeCCCe--EEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecC
Q 019847 157 NLLA-SGGDDNV--VRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAK 233 (335)
Q Consensus 157 ~~l~-~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~ 233 (335)
+.|+ +.+.++. |++||+.... ...+..+........|+||++.++.+.....+..|+++|+..++........
T Consensus 258 ~~la~~~~~~g~~~Iy~~d~~~~~----~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~ 333 (435)
T PRK05137 258 RKVVMSLSQGGNTDIYTMDLRSGT----TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGG 333 (435)
T ss_pred CEEEEEEecCCCceEEEEECCCCc----eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCC
Confidence 8876 4455554 7777876532 3344445556678999999988877653112347888998776654433344
Q ss_pred CcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCC------CcEEE
Q 019847 234 AQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGAD------ETIRF 307 (335)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~v~i 307 (335)
.......|+|+|+.++.... ...+..|.+||+..+.. ..+.. ...+....|+|||+.|+..+.+ ..+.+
T Consensus 334 ~~~~~~~~SpdG~~ia~~~~---~~~~~~i~~~d~~~~~~-~~lt~-~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~ 408 (435)
T PRK05137 334 GRYSTPVWSPRGDLIAFTKQ---GGGQFSIGVMKPDGSGE-RILTS-GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYT 408 (435)
T ss_pred CcccCeEECCCCCEEEEEEc---CCCceEEEEEECCCCce-EeccC-CCCCCCCeECCCCCEEEEEEccCCCCCcceEEE
Confidence 55677899999999976521 12235788899765543 22322 2346788999999988765543 25677
Q ss_pred EecCCCCC
Q 019847 308 WEAFGPSG 315 (335)
Q Consensus 308 w~~~~~~~ 315 (335)
+++.+...
T Consensus 409 ~dl~g~~~ 416 (435)
T PRK05137 409 VDLTGRNE 416 (435)
T ss_pred EECCCCce
Confidence 77766543
No 231
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.75 E-value=5.8e-16 Score=118.66 Aligned_cols=274 Identities=19% Similarity=0.278 Sum_probs=197.7
Q ss_pred eeecC-CceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEE-ECCCcEEEEeCCCceeEeeeccc
Q 019847 22 IDWGR-NNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVG-YMDSKLQLWDAETSKLVRNLEGH 99 (335)
Q Consensus 22 ~~~~~-~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~ 99 (335)
.+|++ ++.++...+-.+.|-|.++-+..+.+.. -+.|..+.|..|..+++++ ..++.|.+|++...+-...+...
T Consensus 14 c~fSp~g~yiAs~~~yrlviRd~~tlq~~qlf~c---ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg 90 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRYRLVIRDSETLQLHQLFLC---LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEG 90 (447)
T ss_pred eeECCCCCeeeeeeeeEEEEeccchhhHHHHHHH---HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccC
Confidence 45666 4667777777899988888776555443 3567889999988877665 57889999999999999999999
Q ss_pred ccceeEeeecCCCC-CEEEEeeCCCcEEEEecccCCeee-----------------------------------------
Q 019847 100 HRRVATSSWNHWNG-HILTSGSKDKSIINHDVRVSNNVT----------------------------------------- 137 (335)
Q Consensus 100 ~~~v~~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~----------------------------------------- 137 (335)
..++.+++|+| ++ .+|.+...+-.|.+|.+.+.....
T Consensus 91 ~agls~~~WSP-dgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ 169 (447)
T KOG4497|consen 91 QAGLSSISWSP-DGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWI 169 (447)
T ss_pred CCcceeeeECC-CcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHH
Confidence 99999999999 66 777788889999999986533100
Q ss_pred ---------------------------------EE-eecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccC--------
Q 019847 138 ---------------------------------SC-IKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSK-------- 175 (335)
Q Consensus 138 ---------------------------------~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~-------- 175 (335)
.. .....-.+..++|+|.+++|++|+.|+.+|+.+--+
T Consensus 170 ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~efl 249 (447)
T KOG4497|consen 170 LLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFL 249 (447)
T ss_pred HHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhc
Confidence 00 001123566788999889999999999988764110
Q ss_pred -------CC------------------------------------------cccceee------ccCCCCCeeEEEecCC
Q 019847 176 -------MS------------------------------------------SSKSLHR------FTDHCGGVKALAWSPH 200 (335)
Q Consensus 176 -------~~------------------------------------------~~~~~~~------~~~~~~~v~~~~~~~~ 200 (335)
+. ....++. +....-.+.-++|++|
T Consensus 250 hl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~D 329 (447)
T KOG4497|consen 250 HLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCD 329 (447)
T ss_pred cchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCC
Confidence 00 0000111 1112334667999999
Q ss_pred CCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCC
Q 019847 201 QVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSS 280 (335)
Q Consensus 201 ~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~ 280 (335)
.. ++++-....-+.+-+||+++.+....+....+|....|+|....++.. .....+++|.......+.. ...
T Consensus 330 s~-y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vc------tg~srLY~W~psg~~~V~v-P~~ 401 (447)
T KOG4497|consen 330 ST-YAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVC------TGKSRLYFWAPSGPRVVGV-PKK 401 (447)
T ss_pred ce-EEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEE------cCCceEEEEcCCCceEEec-CCC
Confidence 85 555543334468999999998888888888999999999999998877 3466788888765444433 333
Q ss_pred CCceeEeEEcCCCCEEEEEeCCCcEEE
Q 019847 281 NSRILDLSQSPDGLTVATAGADETIRF 307 (335)
Q Consensus 281 ~~~i~~~~~~~~~~~l~~~~~dg~v~i 307 (335)
.-.|..+.|..+|..++-.+.|....-
T Consensus 402 GF~i~~l~W~~~g~~i~l~~kDafc~a 428 (447)
T KOG4497|consen 402 GFNIQKLQWLQPGEFIVLCGKDAFCVA 428 (447)
T ss_pred CceeeeEEecCCCcEEEEEcCCceEEE
Confidence 457999999999999999999976543
No 232
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.75 E-value=4.3e-16 Score=120.01 Aligned_cols=248 Identities=17% Similarity=0.266 Sum_probs=180.0
Q ss_pred CCCceEEEEcCCCCEEEEEECCCcEEEEeCCCce-----eEeeeccc------------ccceeEeeecCC-CCCEEEEe
Q 019847 58 DDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSK-----LVRNLEGH------------HRRVATSSWNHW-NGHILTSG 119 (335)
Q Consensus 58 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~~------------~~~v~~~~~~~~-~~~~l~~~ 119 (335)
.+-|.++.|...|.+||+|..+|.|.++.-+... ....++.| ...|..+.|.+. +...++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 4568999999999999999999999999754322 22233333 246888898763 34577888
Q ss_pred eCCCcEEEEecccCCeee-----------------------------------EEeecCCCCEEEEEeecCCCEEEEEeC
Q 019847 120 SKDKSIINHDVRVSNNVT-----------------------------------SCIKAHSGEVCGLKWSNEGNLLASGGD 164 (335)
Q Consensus 120 ~~dg~i~~~d~~~~~~~~-----------------------------------~~~~~~~~~i~~~~~~~~~~~l~~~~~ 164 (335)
+.|.+|++|.+....... .....|.-.|+++.++.|+..++++.
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD- 183 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD- 183 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc-
Confidence 899999999886432110 01135777899999999999888876
Q ss_pred CCeEEEEEccCCCcccceeeccCCC-----CCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEE----Eeec---
Q 019847 165 DNVVRIWERSKMSSSKSLHRFTDHC-----GGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIH----GIDA--- 232 (335)
Q Consensus 165 dg~i~iwd~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~----~~~~--- 232 (335)
|=.|.+|+++-....-.+-.+++++ .-|++..|+|..-++++-++ ..|+|++-|++...+-. .++.
T Consensus 184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSS--SKGtIrLcDmR~~aLCd~hsKlfEeped 261 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSS--SKGTIRLCDMRQSALCDAHSKLFEEPED 261 (433)
T ss_pred ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEec--CCCcEEEeechhhhhhcchhhhhccccC
Confidence 7889999987654444444444432 34889999999888888776 89999999998543211 1110
Q ss_pred ----------CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEEC-CCCceeecccCCCC------------ce---eE
Q 019847 233 ----------KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKY-PNMTKVGELQSSNS------------RI---LD 286 (335)
Q Consensus 233 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~-~~~~~~~~~~~~~~------------~i---~~ 286 (335)
-..|..+.|++.|+++++- +--+|++||+ ...+++.+++.|.. .| ..
T Consensus 262 p~~rsffseiIsSISDvKFs~sGryilsR-------Dyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFe 334 (433)
T KOG1354|consen 262 PSSRSFFSEIISSISDVKFSHSGRYILSR-------DYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFE 334 (433)
T ss_pred CcchhhHHHHhhhhhceEEccCCcEEEEe-------ccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeE
Confidence 1358889999999999975 2379999999 45667777665532 22 35
Q ss_pred eEEcCCCCEEEEEeCCCcEEEEecCCCCC
Q 019847 287 LSQSPDGLTVATAGADETIRFWEAFGPSG 315 (335)
Q Consensus 287 ~~~~~~~~~l~~~~~dg~v~iw~~~~~~~ 315 (335)
++|+.++.+++||+.....+++++..+..
T Consensus 335 c~~sg~~~~v~TGsy~n~frvf~~~~gsk 363 (433)
T KOG1354|consen 335 CSWSGNDSYVMTGSYNNVFRVFNLARGSK 363 (433)
T ss_pred EEEcCCcceEecccccceEEEecCCCCcc
Confidence 78999999999999999999999766543
No 233
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.74 E-value=1.1e-14 Score=120.48 Aligned_cols=248 Identities=13% Similarity=0.146 Sum_probs=162.0
Q ss_pred eeecC--CceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEE-CCCcEEEEeCCCceeEeeecc
Q 019847 22 IDWGR--NNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGY-MDSKLQLWDAETSKLVRNLEG 98 (335)
Q Consensus 22 ~~~~~--~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~ 98 (335)
+.+++ ..+++++.|+.|.++|+.+.+....+.. .....++++++||++++++. ..+.+.++|.++.+.++.+..
T Consensus 42 ~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~---G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~ 118 (369)
T PF02239_consen 42 LKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV---GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPT 118 (369)
T ss_dssp EE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE----SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE-
T ss_pred EEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec---CCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeeccc
Confidence 55666 3577778899999999999998776654 33468899999999998876 689999999999999988764
Q ss_pred c-------ccceeEeeecCCCCC-EEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEE-eCCCeEE
Q 019847 99 H-------HRRVATSSWNHWNGH-ILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASG-GDDNVVR 169 (335)
Q Consensus 99 ~-------~~~v~~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~ 169 (335)
. ...+..+..+| ... ++++--..+.|.+.|......+...............|+|++++++++ ..+..|-
T Consensus 119 ~~~~~~~~~~Rv~aIv~s~-~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~ 197 (369)
T PF02239_consen 119 GGMPVDGPESRVAAIVASP-GRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIA 197 (369)
T ss_dssp -EE-TTTS---EEEEEE-S-SSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEE
T ss_pred ccccccccCCCceeEEecC-CCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeE
Confidence 3 24567788888 555 455555568898889876655444444456677889999999987765 3455677
Q ss_pred EEEccCCCc----------------------------------------------------ccceeeccCCCCCeeEEEe
Q 019847 170 IWERSKMSS----------------------------------------------------SKSLHRFTDHCGGVKALAW 197 (335)
Q Consensus 170 iwd~~~~~~----------------------------------------------------~~~~~~~~~~~~~v~~~~~ 197 (335)
++|.++... .+.++.+.....+ ..+..
T Consensus 198 viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~t 276 (369)
T PF02239_consen 198 VIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKT 276 (369)
T ss_dssp EEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE-
T ss_pred EEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeec
Confidence 776544211 0111122222223 56777
Q ss_pred cCCCCcEEEE-ecCCCCCeEEEEECCCCceEEEeecCC--cEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCcee
Q 019847 198 SPHQVNVLAT-GGGREDGCIKIWNVQKGTCIHGIDAKA--QICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKV 274 (335)
Q Consensus 198 ~~~~~~~~~~-~~g~~d~~i~i~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~ 274 (335)
+|+++++.+. ..+...+.|.++|.++.+.+..+.... .+..+.|+++|+++..+.. ..++.|.+||..+.+.+
T Consensus 277 hP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~----~~~~~i~v~D~~Tl~~~ 352 (369)
T PF02239_consen 277 HPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVW----DGNGAIVVYDAKTLKEK 352 (369)
T ss_dssp -TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE------TTEEEEEETTTTEEE
T ss_pred CCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEe----cCCCEEEEEECCCcEEE
Confidence 9999888886 111256899999999998888876543 4999999999999877643 44559999999999998
Q ss_pred eccc
Q 019847 275 GELQ 278 (335)
Q Consensus 275 ~~~~ 278 (335)
..+.
T Consensus 353 ~~i~ 356 (369)
T PF02239_consen 353 KRIP 356 (369)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8876
No 234
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.74 E-value=1.9e-13 Score=106.65 Aligned_cols=279 Identities=11% Similarity=0.183 Sum_probs=191.5
Q ss_pred CCeEEEEEecC--CceeeEEeecCCCCCceEEEEcCCCCEEEEEEC---CCcEEEEeCCC--cee--EeeecccccceeE
Q 019847 35 GPVLFLWKWEN--GKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYM---DSKLQLWDAET--SKL--VRNLEGHHRRVAT 105 (335)
Q Consensus 35 ~~~i~vw~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iw~~~~--~~~--~~~~~~~~~~v~~ 105 (335)
+..|++|++++ +++ ....+-.+...++-++|+|+++.|.++.. +|.|.-|.++. |++ +........+.+.
T Consensus 15 s~gI~v~~ld~~~g~l-~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~y 93 (346)
T COG2706 15 SQGIYVFNLDTKTGEL-SLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCY 93 (346)
T ss_pred CCceEEEEEeCccccc-chhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeE
Confidence 67899999984 332 22333456777899999999999988864 47788887764 443 2223333345588
Q ss_pred eeecCCCCCEEEEee-CCCcEEEEecccCCeeeE--EeecCCCC----------EEEEEeecCCCEEEEEeCC-CeEEEE
Q 019847 106 SSWNHWNGHILTSGS-KDKSIINHDVRVSNNVTS--CIKAHSGE----------VCGLKWSNEGNLLASGGDD-NVVRIW 171 (335)
Q Consensus 106 ~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~--~~~~~~~~----------i~~~~~~~~~~~l~~~~~d-g~i~iw 171 (335)
++.++ ++++++++. ..|.|.++-++....+.. ....|.+. +....+.|++++|++.+.. -.|.+|
T Consensus 94 vsvd~-~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y 172 (346)
T COG2706 94 VSVDE-DGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLY 172 (346)
T ss_pred EEECC-CCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEE
Confidence 99999 888888776 457999999976543221 12234444 7888999999999988632 369999
Q ss_pred EccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCC-ceEEEee----------cCCcEeEEE
Q 019847 172 ERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKG-TCIHGID----------AKAQICGLE 240 (335)
Q Consensus 172 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-~~~~~~~----------~~~~~~~~~ 240 (335)
++..+................+-+.|+|+++...+..- .+++|.+|..... ..+..++ .......+.
T Consensus 173 ~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~E--L~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIh 250 (346)
T COG2706 173 DLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNE--LNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIH 250 (346)
T ss_pred EcccCccccccccccCCCCCcceEEEcCCCcEEEEEec--cCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEE
Confidence 98865432222222234456788999999998777765 8999999998773 2222221 244678899
Q ss_pred eCCCCceeeeeeeeeeecCCCeEEEEECCCC-cee---ecccCCCCceeEeEEcCCCCEEEEEeCC-CcEEEEecCCCCC
Q 019847 241 WNRHHKEILSGHGFSASGDGNKLCLWKYPNM-TKV---GELQSSNSRILDLSQSPDGLTVATAGAD-ETIRFWEAFGPSG 315 (335)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~-~~~---~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~v~iw~~~~~~~ 315 (335)
.+++|++|.++.. ....|.+|.+... ..+ .....+....+.+.+++.+++|+++.++ ..|.+|..+....
T Consensus 251 is~dGrFLYasNR-----g~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG 325 (346)
T COG2706 251 ISPDGRFLYASNR-----GHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETG 325 (346)
T ss_pred ECCCCCEEEEecC-----CCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCc
Confidence 9999999988753 3457888877543 222 2223344446889999999999999875 4699999887766
Q ss_pred CCCcccc
Q 019847 316 DEDSVSH 322 (335)
Q Consensus 316 ~~~~~~~ 322 (335)
.......
T Consensus 326 ~L~~~~~ 332 (346)
T COG2706 326 RLTLLGR 332 (346)
T ss_pred eEEeccc
Confidence 5544433
No 235
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.73 E-value=1.7e-16 Score=128.97 Aligned_cols=167 Identities=20% Similarity=0.314 Sum_probs=127.7
Q ss_pred ceEEEecCCeEEEEEecCCceeeEEeecC--CCCCceEEEEcCCC-CEEEEEECCCcEEEEeCCC--------------c
Q 019847 28 NVLAVALGPVLFLWKWENGKVKKLLQVPG--EDDYPTSVSWSHDA-KTLAVGYMDSKLQLWDAET--------------S 90 (335)
Q Consensus 28 ~~~~~~~~~~i~vw~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~-~~l~~~~~dg~i~iw~~~~--------------~ 90 (335)
.++.+-..|.|.+.|....+..+++.... .+..|+|+.|-|.+ ..++++-.+|.+++||.+- +
T Consensus 187 dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~ 266 (636)
T KOG2394|consen 187 DLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDG 266 (636)
T ss_pred ceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCC
Confidence 56777777888888876644333332222 24789999999944 4566677899999997531 1
Q ss_pred --------------eeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCC
Q 019847 91 --------------KLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEG 156 (335)
Q Consensus 91 --------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~ 156 (335)
.++..+.-....|...+|+| ++.+||+.+.||.++|||..+.+ +....+..-+...|++|+|||
T Consensus 267 ~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~-DG~~LA~VSqDGfLRvF~fdt~e-Llg~mkSYFGGLLCvcWSPDG 344 (636)
T KOG2394|consen 267 DQFAILTSKSKKTRNPVARWHIGEGSINEFAFSP-DGKYLATVSQDGFLRIFDFDTQE-LLGVMKSYFGGLLCVCWSPDG 344 (636)
T ss_pred CeeEEeeeeccccCCccceeEeccccccceeEcC-CCceEEEEecCceEEEeeccHHH-HHHHHHhhccceEEEEEcCCc
Confidence 11112222345888999999 99999999999999999998544 344555566789999999999
Q ss_pred CEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecC
Q 019847 157 NLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSP 199 (335)
Q Consensus 157 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 199 (335)
+++++|++|--|.||.+.. .+.+..-.+|++.|..++|.|
T Consensus 345 KyIvtGGEDDLVtVwSf~e---rRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 345 KYIVTGGEDDLVTVWSFEE---RRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred cEEEecCCcceEEEEEecc---ceEEEeccccccceeeEeecc
Confidence 9999999999999999665 567888899999999999997
No 236
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.72 E-value=5.7e-17 Score=124.09 Aligned_cols=225 Identities=17% Similarity=0.209 Sum_probs=152.9
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeec
Q 019847 63 SVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKA 142 (335)
Q Consensus 63 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~ 142 (335)
-++|+|+|+++|+.+.- .+.|-|.++-+..+.+. --..|..+.|....-..|.....++.|.+|++...+- ...+..
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~-cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew-~ckIde 89 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFL-CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEW-YCKIDE 89 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHH-HHHHhhheeeeccceeeeeeeeccceEEEEEeeccee-EEEecc
Confidence 46799999999999755 78889988877666554 3467888899884555666677899999999986654 444566
Q ss_pred CCCCEEEEEeecCCCE-EEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCC--eEEEE
Q 019847 143 HSGEVCGLKWSNEGNL-LASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDG--CIKIW 219 (335)
Q Consensus 143 ~~~~i~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~--~i~i~ 219 (335)
...++.+++|+|+|+. |.+...|-.|.+|.+.+... ..+.-.+..+..++|+|+|++...... .|. .+.+.
T Consensus 90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~----~~~~~pK~~~kg~~f~~dg~f~ai~sR--rDCkdyv~i~ 163 (447)
T KOG4497|consen 90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG----YLLPHPKTNVKGYAFHPDGQFCAILSR--RDCKDYVQIS 163 (447)
T ss_pred CCCcceeeeECCCcceEeeeecceeEEEEEEecccee----EEecccccCceeEEECCCCceeeeeec--ccHHHHHHHH
Confidence 7788999999999954 55666788999999886321 122223445688999999975444432 222 12222
Q ss_pred ECCCCceEEEeecC-CcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEE
Q 019847 220 NVQKGTCIHGIDAK-AQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVAT 298 (335)
Q Consensus 220 d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 298 (335)
.-.....+..++.+ -..+.+.|+|+|..+++ ||.--.-.+..+. -.-.+..++|+|.+++|+.
T Consensus 164 ~c~~W~ll~~f~~dT~DltgieWsPdg~~laV---------------wd~~Leykv~aYe-~~lG~k~v~wsP~~qflav 227 (447)
T KOG4497|consen 164 SCKAWILLKEFKLDTIDLTGIEWSPDGNWLAV---------------WDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAV 227 (447)
T ss_pred hhHHHHHHHhcCCCcccccCceECCCCcEEEE---------------ecchhhheeeeee-eccceeEEEeccccceEEe
Confidence 22233344444443 36788999999877764 4421111111111 1235888999999999999
Q ss_pred EeCCCcEEEEecCC
Q 019847 299 AGADETIRFWEAFG 312 (335)
Q Consensus 299 ~~~dg~v~iw~~~~ 312 (335)
|+.|+.+|+-+--+
T Consensus 228 GsyD~~lrvlnh~t 241 (447)
T KOG4497|consen 228 GSYDQMLRVLNHFT 241 (447)
T ss_pred eccchhhhhhceee
Confidence 99999999855433
No 237
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.72 E-value=3.9e-15 Score=116.51 Aligned_cols=263 Identities=13% Similarity=0.135 Sum_probs=186.9
Q ss_pred ccccceeeeecCC---ceEEEe-cCCeEEEEEecCCceeeEE----eecCCCCCceEEEEcCCCCEEEEEECCCcEEEEe
Q 019847 15 EDYYSKVIDWGRN---NVLAVA-LGPVLFLWKWENGKVKKLL----QVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWD 86 (335)
Q Consensus 15 ~~~~~~~~~~~~~---~~~~~~-~~~~i~vw~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~ 86 (335)
....+..+.|..+ .++.+. .+..+..+.++...+.... .......+|..++.. ...|++|-.+|.+.+|.
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~ 131 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRH 131 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEe
Confidence 3445566666542 344444 5666666666655543332 233345566666553 33678888899999999
Q ss_pred CCCce----eEeeecccccceeEeeecCCCCCEEEEeeCC--CcEEEEecccCCeeeEEeec--------CCCCEEEEEe
Q 019847 87 AETSK----LVRNLEGHHRRVATSSWNHWNGHILTSGSKD--KSIINHDVRVSNNVTSCIKA--------HSGEVCGLKW 152 (335)
Q Consensus 87 ~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~i~~~d~~~~~~~~~~~~~--------~~~~i~~~~~ 152 (335)
.+.+. .+..+. ...++..+.-.+....++++|+.. ..+.+||++...++...-.. -.-.++++.|
T Consensus 132 ~k~~d~hss~l~~la-~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~F 210 (412)
T KOG3881|consen 132 DKSGDLHSSKLIKLA-TGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRF 210 (412)
T ss_pred ccCCccccccceeee-cCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecccee
Confidence 87443 233333 235677777778778888889999 89999999876443322111 1224678889
Q ss_pred ecC--CCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEE-
Q 019847 153 SNE--GNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHG- 229 (335)
Q Consensus 153 ~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~- 229 (335)
-+. ...||+++.-+.+++||.+.. .+++..+.-...+++++...|.+..+++ +. .-+.+..||++.++....
T Consensus 211 l~g~~~~~fat~T~~hqvR~YDt~~q--RRPV~~fd~~E~~is~~~l~p~gn~Iy~-gn--~~g~l~~FD~r~~kl~g~~ 285 (412)
T KOG3881|consen 211 LEGSPNYKFATITRYHQVRLYDTRHQ--RRPVAQFDFLENPISSTGLTPSGNFIYT-GN--TKGQLAKFDLRGGKLLGCG 285 (412)
T ss_pred cCCCCCceEEEEecceeEEEecCccc--CcceeEeccccCcceeeeecCCCcEEEE-ec--ccchhheecccCceeeccc
Confidence 886 889999999999999999854 4567777777889999999999975555 33 789999999999988776
Q ss_pred eec-CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCC
Q 019847 230 IDA-KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPD 292 (335)
Q Consensus 230 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~ 292 (335)
+.. .+.+.++..+|.+++++++ +-|..++|+|+++.+++..... ...++++-+.++
T Consensus 286 ~kg~tGsirsih~hp~~~~las~------GLDRyvRIhD~ktrkll~kvYv-Ks~lt~il~~~~ 342 (412)
T KOG3881|consen 286 LKGITGSIRSIHCHPTHPVLASC------GLDRYVRIHDIKTRKLLHKVYV-KSRLTFILLRDD 342 (412)
T ss_pred cCCccCCcceEEEcCCCceEEee------ccceeEEEeecccchhhhhhhh-hccccEEEecCC
Confidence 443 5689999999999999987 7799999999999777655432 234667776554
No 238
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.72 E-value=2.8e-14 Score=121.15 Aligned_cols=249 Identities=13% Similarity=0.121 Sum_probs=153.9
Q ss_pred CeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEE---EEECC--CcEEEEeCCCceeEeeecccccceeEeeecC
Q 019847 36 PVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLA---VGYMD--SKLQLWDAETSKLVRNLEGHHRRVATSSWNH 110 (335)
Q Consensus 36 ~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~---~~~~d--g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~ 110 (335)
..|.+.|.+.++..++. ........-+|+|||+.++ +...+ ..|.+.++.+++... +....+.....+|+|
T Consensus 165 ~~l~~~d~dG~~~~~lt---~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSP 240 (428)
T PRK01029 165 GELWSVDYDGQNLRPLT---QEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSP 240 (428)
T ss_pred ceEEEEcCCCCCceEcc---cCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECC
Confidence 36778887776654332 3445567889999997532 33333 357888888775433 333445556789999
Q ss_pred CCCCEEEEeeC-CC----cEEEEecccC--CeeeEEeecCCCCEEEEEeecCCCEEEEEe-CCCeEEEEEccCCCcccce
Q 019847 111 WNGHILTSGSK-DK----SIINHDVRVS--NNVTSCIKAHSGEVCGLKWSNEGNLLASGG-DDNVVRIWERSKMSSSKSL 182 (335)
Q Consensus 111 ~~~~~l~~~~~-dg----~i~~~d~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~ 182 (335)
+++.|+..+. +| .+..|++..+ .................+|+|||+.|+..+ .+|...+|.+.........
T Consensus 241 -DG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~ 319 (428)
T PRK01029 241 -RKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSP 319 (428)
T ss_pred -CCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccce
Confidence 8877765442 33 3444676542 222333333333456789999999888766 4665555543321111123
Q ss_pred eeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCe
Q 019847 183 HRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNK 262 (335)
Q Consensus 183 ~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (335)
..+..+...+....|+|||+.++.+........|.+||+.+++..........+....|+|+|+.++.... ......
T Consensus 320 ~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~---~~g~~~ 396 (428)
T PRK01029 320 RLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAG---NSNESE 396 (428)
T ss_pred EEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEEC---CCCCce
Confidence 33333445677899999998888776411134799999998876544434446678999999998875321 123567
Q ss_pred EEEEECCCCceeecccCCCCceeEeEEcCCC
Q 019847 263 LCLWKYPNMTKVGELQSSNSRILDLSQSPDG 293 (335)
Q Consensus 263 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 293 (335)
|.++|+..++..... ...+.+...+|+|-.
T Consensus 397 L~~vdl~~g~~~~Lt-~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 397 LYLISLITKKTRKIV-IGSGEKRFPSWGAFP 426 (428)
T ss_pred EEEEECCCCCEEEee-cCCCcccCceecCCC
Confidence 899998877654333 334456677888753
No 239
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.71 E-value=2.9e-14 Score=122.19 Aligned_cols=219 Identities=16% Similarity=0.203 Sum_probs=144.2
Q ss_pred cEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCC---CcEEEEecccCCeeeEEeecCCCCEEEEEeecCCC
Q 019847 81 KLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKD---KSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGN 157 (335)
Q Consensus 81 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 157 (335)
.|.++|....+ .+.+..+...+....|+| +++.|+.+..+ ..|++||+.++.. ..+..+...+.+++|+|+++
T Consensus 171 ~l~~~d~~g~~-~~~l~~~~~~~~~p~~Sp-dg~~la~~~~~~~~~~i~v~d~~~g~~--~~~~~~~~~~~~~~~spDg~ 246 (417)
T TIGR02800 171 ELQVADYDGAN-PQTITRSREPILSPAWSP-DGQKLAYVSFESGKPEIYVQDLATGQR--EKVASFPGMNGAPAFSPDGS 246 (417)
T ss_pred eEEEEcCCCCC-CEEeecCCCceecccCCC-CCCEEEEEEcCCCCcEEEEEECCCCCE--EEeecCCCCccceEECCCCC
Confidence 68888875443 444555667788999999 88888877644 4799999986643 22334556677899999998
Q ss_pred EEEEE-eCCC--eEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCC
Q 019847 158 LLASG-GDDN--VVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKA 234 (335)
Q Consensus 158 ~l~~~-~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~ 234 (335)
.|+.. +.++ .|++||+.+.. ...+..+........|+|+++.++.+........|+++|+.+++.........
T Consensus 247 ~l~~~~~~~~~~~i~~~d~~~~~----~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~ 322 (417)
T TIGR02800 247 KLAVSLSKDGNPDIYVMDLDGKQ----LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGG 322 (417)
T ss_pred EEEEEECCCCCccEEEEECCCCC----EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCC
Confidence 77654 4444 58888877532 23333344445577899999888776531112368888988776544333455
Q ss_pred cEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCC---cEEEEecC
Q 019847 235 QICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADE---TIRFWEAF 311 (335)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~v~iw~~~ 311 (335)
......|+|+++.++.... ......|.+||+.++... .+... .......|+||+++|+..+.++ .+.+.+..
T Consensus 323 ~~~~~~~spdg~~i~~~~~---~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 323 YNASPSWSPDGDLIAFVHR---EGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVSTD 397 (417)
T ss_pred CccCeEECCCCCEEEEEEc---cCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence 6678899999998887631 011237889998875543 22222 2245568999999888877654 35555544
Q ss_pred C
Q 019847 312 G 312 (335)
Q Consensus 312 ~ 312 (335)
.
T Consensus 398 g 398 (417)
T TIGR02800 398 G 398 (417)
T ss_pred C
Confidence 4
No 240
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.70 E-value=1.3e-16 Score=127.42 Aligned_cols=232 Identities=16% Similarity=0.292 Sum_probs=185.2
Q ss_pred CCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeee
Q 019847 58 DDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVT 137 (335)
Q Consensus 58 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~ 137 (335)
.-..+.+.++.+|++|+.|+..|.+..+|..++++..++. -...|.++.|.. +..+++++ ....+++||-. +.+ +
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LH-neq~~AVA-QK~y~yvYD~~-GtE-l 203 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLH-NEQFFAVA-QKKYVYVYDNN-GTE-L 203 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhc-chHHHHhh-hhceEEEecCC-CcE-E
Confidence 3456889999999999999999999999999999988887 457899999987 66666654 56789999965 443 4
Q ss_pred EEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEE
Q 019847 138 SCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIK 217 (335)
Q Consensus 138 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~ 217 (335)
.++.. ...|..+.|-|..-+|++++..|.++.-|+..+. .+..+....+.+..++-+|-+. ++-.|. ..|+|.
T Consensus 204 HClk~-~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~Gk---lVa~~~t~~G~~~vm~qNP~Na-Vih~Gh--snGtVS 276 (545)
T KOG1272|consen 204 HCLKR-HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGK---LVASIRTGAGRTDVMKQNPYNA-VIHLGH--SNGTVS 276 (545)
T ss_pred eehhh-cCchhhhcccchhheeeecccCCceEEEeechhh---hhHHHHccCCccchhhcCCccc-eEEEcC--CCceEE
Confidence 44443 3568899999998899999999999999988754 4555555677888888899874 666655 899999
Q ss_pred EEECCCCceEEEee-cCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEE
Q 019847 218 IWNVQKGTCIHGID-AKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTV 296 (335)
Q Consensus 218 i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 296 (335)
+|.....+++..+- +.+++.++++.++|.++++. +.|..++|||+++...+.++.. ..+...+++|..| +|
T Consensus 277 lWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTt------G~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg-lL 348 (545)
T KOG1272|consen 277 LWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATT------GLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG-LL 348 (545)
T ss_pred ecCCCCcchHHHHHhcCCCcceEEECCCCcEEeec------ccccceeEeeeccccccceeec-CCCcccccccccc-ce
Confidence 99998888776654 56799999999999999987 7899999999999887776655 3456788888876 34
Q ss_pred EEEeCCCcEEEEec
Q 019847 297 ATAGADETIRFWEA 310 (335)
Q Consensus 297 ~~~~~dg~v~iw~~ 310 (335)
| .+....|.||.=
T Consensus 349 A-~~~G~~v~iw~d 361 (545)
T KOG1272|consen 349 A-LSYGDHVQIWKD 361 (545)
T ss_pred e-eecCCeeeeehh
Confidence 4 445568999953
No 241
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.70 E-value=3.9e-15 Score=114.73 Aligned_cols=284 Identities=18% Similarity=0.298 Sum_probs=190.3
Q ss_pred ccccceeeeecCCceEEEecCCeEEEEEe-cCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCC----C
Q 019847 15 EDYYSKVIDWGRNNVLAVALGPVLFLWKW-ENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAE----T 89 (335)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~i~vw~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~----~ 89 (335)
+..+-..+-.-.+.++.++.|.+++||-- +.++.-+.+.. ....+++++.+.++...|++|-.+|++.-+.+. .
T Consensus 25 d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~-~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnk 103 (404)
T KOG1409|consen 25 DDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYH-YMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNK 103 (404)
T ss_pred hhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhh-hCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhh
Confidence 33334444445578999999999999964 44544333322 235778999999999999999999999988653 3
Q ss_pred ceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEE---------------------------------------ec
Q 019847 90 SKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINH---------------------------------------DV 130 (335)
Q Consensus 90 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~---------------------------------------d~ 130 (335)
...++....|...+..+.|+- ....+++.+.|..+.-- .+
T Consensus 104 m~~~r~~~~h~~~v~~~if~~-~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~ 182 (404)
T KOG1409|consen 104 MTFLKDYLAHQARVSAIVFSL-THEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKL 182 (404)
T ss_pred cchhhhhhhhhcceeeEEecC-CceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEE
Confidence 445566667888888888876 66666666665443211 11
Q ss_pred c-cCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEec
Q 019847 131 R-VSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGG 209 (335)
Q Consensus 131 ~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 209 (335)
. +.-.+...+.+|.+.+.+++|.|..+.|.+|..|..+.+||+-.. ......+.+|...|..+...+.-..+++++
T Consensus 183 ~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~--~g~~~el~gh~~kV~~l~~~~~t~~l~S~~- 259 (404)
T KOG1409|consen 183 EQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGR--KGTAYELQGHNDKVQALSYAQHTRQLISCG- 259 (404)
T ss_pred eecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCC--cceeeeeccchhhhhhhhhhhhheeeeecc-
Confidence 1 011234557789999999999999999999999999999998643 334566778999999998888777777766
Q ss_pred CCCCCeEEEEECCCCceEEE-e---------e--------------------c-----CCcEeEEEeCCCCceeeeeeee
Q 019847 210 GREDGCIKIWNVQKGTCIHG-I---------D--------------------A-----KAQICGLEWNRHHKEILSGHGF 254 (335)
Q Consensus 210 g~~d~~i~i~d~~~~~~~~~-~---------~--------------------~-----~~~~~~~~~~~~~~~~~~~~~~ 254 (335)
.||.|.+||+...+.... . . + ...+...+-+....+...|.
T Consensus 260 --edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~-- 335 (404)
T KOG1409|consen 260 --EDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGF-- 335 (404)
T ss_pred --CCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccc--
Confidence 799999999875432110 0 0 0 01122222222222222222
Q ss_pred eeecCCCeEEEEECC-------CCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCC
Q 019847 255 SASGDGNKLCLWKYP-------NMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFG 312 (335)
Q Consensus 255 ~~~~~~~~i~i~d~~-------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~ 312 (335)
.-.+++-|.- +..+++.+..-...|+.+.+...-.+|+|+|.|..|+|||+..
T Consensus 336 -----e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqetlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 336 -----EFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQETLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred -----eeEEEEecccchhhhcCCCCccccccccccceeEEEhhhhccceeecCCceEEEEEechh
Confidence 2334443321 1233444444344699999988888999999999999999874
No 242
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.69 E-value=5.3e-14 Score=120.62 Aligned_cols=237 Identities=16% Similarity=0.159 Sum_probs=151.0
Q ss_pred eEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECC---CcEEEEeCCCceeEeeecccccceeEeeecCCCC
Q 019847 37 VLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMD---SKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNG 113 (335)
Q Consensus 37 ~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 113 (335)
.|.++|.+......+ ..+...+...+|+|+|++|+.+..+ ..|++||+.+++... +..+...+.++.|+| ++
T Consensus 171 ~l~~~d~~g~~~~~l---~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~sp-Dg 245 (417)
T TIGR02800 171 ELQVADYDGANPQTI---TRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSP-DG 245 (417)
T ss_pred eEEEEcCCCCCCEEe---ecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECC-CC
Confidence 688888765554332 2456678899999999999987644 479999999876543 333556677789999 77
Q ss_pred CEEE-EeeCCC--cEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCC-C--eEEEEEccCCCcccceeeccC
Q 019847 114 HILT-SGSKDK--SIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDD-N--VVRIWERSKMSSSKSLHRFTD 187 (335)
Q Consensus 114 ~~l~-~~~~dg--~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~ 187 (335)
+.|+ +.+.++ .|++||+.++. ...+..+........|+|+++.|+..+.. + .|+++|+.... ...+..
T Consensus 246 ~~l~~~~~~~~~~~i~~~d~~~~~--~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~----~~~l~~ 319 (417)
T TIGR02800 246 SKLAVSLSKDGNPDIYVMDLDGKQ--LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE----VRRLTF 319 (417)
T ss_pred CEEEEEECCCCCccEEEEECCCCC--EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC----EEEeec
Confidence 6555 555554 58888887544 23334454555677899999988776643 3 57777766432 223333
Q ss_pred CCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEE
Q 019847 188 HCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWK 267 (335)
Q Consensus 188 ~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d 267 (335)
+........|+|+++.++.+........|.+||+.++... .+..........|+|+++.++.... ......+.+.+
T Consensus 320 ~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~p~~spdg~~l~~~~~---~~~~~~l~~~~ 395 (417)
T TIGR02800 320 RGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDTGLDESPSFAPNGRMILYATT---RGGRGVLGLVS 395 (417)
T ss_pred CCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCCCCCCCceECCCCCEEEEEEe---CCCcEEEEEEE
Confidence 4455678899999987777663111127899999876543 3332333456689999998876532 11123466666
Q ss_pred CCCCceeecccCCCCceeEeEE
Q 019847 268 YPNMTKVGELQSSNSRILDLSQ 289 (335)
Q Consensus 268 ~~~~~~~~~~~~~~~~i~~~~~ 289 (335)
.. ++....+..+.+.+..++|
T Consensus 396 ~~-g~~~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 396 TD-GRFRARLPLGNGDVREPAW 416 (417)
T ss_pred CC-CceeeECCCCCCCcCCCCC
Confidence 43 4444455444445555554
No 243
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=1.9e-13 Score=117.32 Aligned_cols=238 Identities=15% Similarity=0.091 Sum_probs=148.3
Q ss_pred cEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCC---CcEEEEecccCCeeeEEeecCCCCEEEEEeecCCC
Q 019847 81 KLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKD---KSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGN 157 (335)
Q Consensus 81 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 157 (335)
.|.++|.+.++ .+.+..+...+....|+| +++.|+..+.+ ..|.+||+.++.. ..+....+.+....|+|||+
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSp-DG~~la~~s~~~~~~~l~~~~l~~g~~--~~l~~~~g~~~~~~~SpDG~ 255 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSP-DGKRIAYVSFEQKRPRIFVQNLDTGRR--EQITNFEGLNGAPAWSPDGS 255 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECC-CCCEEEEEEcCCCCCEEEEEECCCCCE--EEccCCCCCcCCeEECCCCC
Confidence 47778876544 344555677889999999 88877765533 3688999986653 22333444556789999999
Q ss_pred EEEE-EeCCC--eEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCC
Q 019847 158 LLAS-GGDDN--VVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKA 234 (335)
Q Consensus 158 ~l~~-~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~ 234 (335)
.|+. .+.+| .|+++|+.+.. ...+..+........|+|+++.++.+........|+++|+.+++.........
T Consensus 256 ~la~~~~~~g~~~Iy~~d~~~~~----~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~ 331 (430)
T PRK00178 256 KLAFVLSKDGNPEIYVMDLASRQ----LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGN 331 (430)
T ss_pred EEEEEEccCCCceEEEEECCCCC----eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCC
Confidence 8874 44454 58888987543 23334455556678999999888777541112468888888776543322233
Q ss_pred cEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCC-C--cEEEEecC
Q 019847 235 QICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGAD-E--TIRFWEAF 311 (335)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~v~iw~~~ 311 (335)
......|+|+|+.++.... ......|.++|+.+++....... .......|+|||++++..+.+ | .+.++++.
T Consensus 332 ~~~~~~~Spdg~~i~~~~~---~~~~~~l~~~dl~tg~~~~lt~~--~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~ 406 (430)
T PRK00178 332 YNARPRLSADGKTLVMVHR---QDGNFHVAAQDLQRGSVRILTDT--SLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN 406 (430)
T ss_pred CccceEECCCCCEEEEEEc---cCCceEEEEEECCCCCEEEccCC--CCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 3446789999999876521 01123688899988765332222 222356899999998876643 3 46666665
Q ss_pred CCCCCCCccccccccccceec
Q 019847 312 GPSGDEDSVSHLAGLVSLKTS 332 (335)
Q Consensus 312 ~~~~~~~~~~~~~~i~~~~~~ 332 (335)
+... .....+...+....++
T Consensus 407 g~~~-~~l~~~~g~~~~p~ws 426 (430)
T PRK00178 407 GRVR-LPLPTAQGEVREPSWS 426 (430)
T ss_pred CCce-EECcCCCCCcCCCccC
Confidence 4333 1222333344444443
No 244
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=6.3e-15 Score=115.66 Aligned_cols=242 Identities=14% Similarity=0.176 Sum_probs=169.4
Q ss_pred ccccceeeeecCC-ceEE-EecCCeEEEEEecCC------ceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEe
Q 019847 15 EDYYSKVIDWGRN-NVLA-VALGPVLFLWKWENG------KVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWD 86 (335)
Q Consensus 15 ~~~~~~~~~~~~~-~~~~-~~~~~~i~vw~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~ 86 (335)
+...++++.|+.+ ++++ ++.|..+++|+++.. +.+.+. -..|.+.|.|++|.....++.+|..+++|...|
T Consensus 55 H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~-~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HD 133 (609)
T KOG4227|consen 55 HTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVM-EHPHRSNIFSLEFDLENRFLYSGERWGTVIKHD 133 (609)
T ss_pred hccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceec-cCccccceEEEEEccCCeeEecCCCcceeEeee
Confidence 4567899999875 4444 556789999998642 222221 134678999999999999999999999999999
Q ss_pred CCCceeEeeecc--cccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeee--EEeecCCCCEEEEEeec-CCCEEEE
Q 019847 87 AETSKLVRNLEG--HHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVT--SCIKAHSGEVCGLKWSN-EGNLLAS 161 (335)
Q Consensus 87 ~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~--~~~~~~~~~i~~~~~~~-~~~~l~~ 161 (335)
+++.+.+..+.. ..+.|..+..+| ..+.|++.+.++.|.+||.+...... ..+.........+.|+| ...+|++
T Consensus 134 iEt~qsi~V~~~~~~~~~VY~m~~~P-~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~ 212 (609)
T KOG4227|consen 134 IETKQSIYVANENNNRGDVYHMDQHP-TDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILV 212 (609)
T ss_pred cccceeeeeecccCcccceeecccCC-CCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEe
Confidence 999888776652 235899999999 79999999999999999998655322 22334556778899999 5678889
Q ss_pred EeCCCeEEEEEccCCCcccc--------------------------e-----------eec--------c-CCC------
Q 019847 162 GGDDNVVRIWERSKMSSSKS--------------------------L-----------HRF--------T-DHC------ 189 (335)
Q Consensus 162 ~~~dg~i~iwd~~~~~~~~~--------------------------~-----------~~~--------~-~~~------ 189 (335)
.+..+-+.+||++....... + ..+ + .|+
T Consensus 213 ~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N 292 (609)
T KOG4227|consen 213 NSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCN 292 (609)
T ss_pred ccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCccee
Confidence 99999999999875321000 0 000 0 011
Q ss_pred -CCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCC-----------------------ceEEEeecC-CcEeEEEeCCC
Q 019847 190 -GGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKG-----------------------TCIHGIDAK-AQICGLEWNRH 244 (335)
Q Consensus 190 -~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-----------------------~~~~~~~~~-~~~~~~~~~~~ 244 (335)
..+.+++|..+ +-+++|+ .+-.|++|.+... +.+..++++ .-+..+.|+|.
T Consensus 293 ~~T~KS~~F~~D--~~v~tGS--D~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H 368 (609)
T KOG4227|consen 293 IKTIKSMTFIDD--YTVATGS--DHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQH 368 (609)
T ss_pred eeeeeeeeeecc--eeeeccC--cccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCC
Confidence 11334444433 3355554 8889999987531 112333443 35678999999
Q ss_pred CceeeeeeeeeeecCCCeEEEEEC
Q 019847 245 HKEILSGHGFSASGDGNKLCLWKY 268 (335)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~i~i~d~ 268 (335)
...+++. +-.+.+++|.-
T Consensus 369 ~~~l~SS------GVE~~~KlWS~ 386 (609)
T KOG4227|consen 369 NNLLVSS------GVENSFKLWSD 386 (609)
T ss_pred cceEecc------chhhheecccc
Confidence 8888766 66899999964
No 245
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=1.5e-13 Score=117.61 Aligned_cols=238 Identities=13% Similarity=0.116 Sum_probs=150.5
Q ss_pred eEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECC---CcEEEEeCCCceeEeeecccccceeEeeecCCCC
Q 019847 37 VLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMD---SKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNG 113 (335)
Q Consensus 37 ~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 113 (335)
.+.++|.+......+ ..+...+.+..|+|||+.|+..+.+ ..|.+||+.+++... +...........|+| ++
T Consensus 199 ~l~i~d~dG~~~~~l---~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSP-DG 273 (448)
T PRK04792 199 QLMIADYDGYNEQML---LRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSP-DG 273 (448)
T ss_pred EEEEEeCCCCCceEe---ecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECC-CC
Confidence 677778766554322 2456678899999999999877543 258899998876533 222233445789999 77
Q ss_pred CEEE-EeeCCCc--EEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeC-CC--eEEEEEccCCCcccceeeccC
Q 019847 114 HILT-SGSKDKS--IINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGD-DN--VVRIWERSKMSSSKSLHRFTD 187 (335)
Q Consensus 114 ~~l~-~~~~dg~--i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~ 187 (335)
+.|+ +.+.+|. |+++|+.++. ...+..+.......+|+||++.|+..+. ++ .|+++|+..+.. ..+ ++.
T Consensus 274 ~~La~~~~~~g~~~Iy~~dl~tg~--~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~-~~L-t~~- 348 (448)
T PRK04792 274 KKLALVLSKDGQPEIYVVDIATKA--LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV-SRL-TFE- 348 (448)
T ss_pred CEEEEEEeCCCCeEEEEEECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEE-ecC-
Confidence 7665 5566675 7777876544 2334445556678899999998877654 33 466667654321 112 122
Q ss_pred CCCCeeEEEecCCCCcEEEEecCCCCC--eEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEE
Q 019847 188 HCGGVKALAWSPHQVNVLATGGGREDG--CIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCL 265 (335)
Q Consensus 188 ~~~~v~~~~~~~~~~~~~~~~~g~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i 265 (335)
........|+|+|+.++.+.. .++ .|.++|+.+++... +..........|+|+|+.++.... ......+.+
T Consensus 349 -g~~~~~~~~SpDG~~l~~~~~--~~g~~~I~~~dl~~g~~~~-lt~~~~d~~ps~spdG~~I~~~~~---~~g~~~l~~ 421 (448)
T PRK04792 349 -GEQNLGGSITPDGRSMIMVNR--TNGKFNIARQDLETGAMQV-LTSTRLDESPSVAPNGTMVIYSTT---YQGKQVLAA 421 (448)
T ss_pred -CCCCcCeeECCCCCEEEEEEe--cCCceEEEEEECCCCCeEE-ccCCCCCCCceECCCCCEEEEEEe---cCCceEEEE
Confidence 222345789999988877754 344 56667888776532 322222234589999998876421 112234777
Q ss_pred EECCCCceeecccCCCCceeEeEEcCC
Q 019847 266 WKYPNMTKVGELQSSNSRILDLSQSPD 292 (335)
Q Consensus 266 ~d~~~~~~~~~~~~~~~~i~~~~~~~~ 292 (335)
++. ++.....+..+.+.+...+|+|-
T Consensus 422 ~~~-~G~~~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 422 VSI-DGRFKARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred EEC-CCCceEECcCCCCCcCCCccCCC
Confidence 786 45555666666666788888873
No 246
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=1.7e-13 Score=117.61 Aligned_cols=238 Identities=14% Similarity=0.143 Sum_probs=153.1
Q ss_pred eEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECC---CcEEEEeCCCceeEeeecccccceeEeeecCCCC
Q 019847 37 VLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMD---SKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNG 113 (335)
Q Consensus 37 ~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 113 (335)
.|.++|.+.++... +..+...+...+|+|||+.|+..+.+ ..|.+||+.+++... +....+.+....|+| ++
T Consensus 180 ~l~~~d~~g~~~~~---l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~Sp-DG 254 (430)
T PRK00178 180 TLQRSDYDGARAVT---LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSP-DG 254 (430)
T ss_pred EEEEECCCCCCceE---EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECC-CC
Confidence 47777877665433 22456778999999999999877643 368999998886543 333344556789999 77
Q ss_pred CEEE-EeeCCC--cEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeC-CC--eEEEEEccCCCcccceeeccC
Q 019847 114 HILT-SGSKDK--SIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGD-DN--VVRIWERSKMSSSKSLHRFTD 187 (335)
Q Consensus 114 ~~l~-~~~~dg--~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~ 187 (335)
+.|+ +...+| .|+++|+.++.. ..+..+........|+||++.++..+. +| .|+++|+..+.. ..+. ..
T Consensus 255 ~~la~~~~~~g~~~Iy~~d~~~~~~--~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~-~~lt-~~- 329 (430)
T PRK00178 255 SKLAFVLSKDGNPEIYVMDLASRQL--SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA-ERVT-FV- 329 (430)
T ss_pred CEEEEEEccCCCceEEEEECCCCCe--EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEee-cC-
Confidence 7665 555555 588888876542 334445555677899999998877664 33 577777665432 1121 11
Q ss_pred CCCCeeEEEecCCCCcEEEEecCCCCC--eEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEE
Q 019847 188 HCGGVKALAWSPHQVNVLATGGGREDG--CIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCL 265 (335)
Q Consensus 188 ~~~~v~~~~~~~~~~~~~~~~~g~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i 265 (335)
........|+|+++.++.+.. .++ .|.++|+.+++.. .+..........|+|+|+.++.... ......+.+
T Consensus 330 -~~~~~~~~~Spdg~~i~~~~~--~~~~~~l~~~dl~tg~~~-~lt~~~~~~~p~~spdg~~i~~~~~---~~g~~~l~~ 402 (430)
T PRK00178 330 -GNYNARPRLSADGKTLVMVHR--QDGNFHVAAQDLQRGSVR-ILTDTSLDESPSVAPNGTMLIYATR---QQGRGVLML 402 (430)
T ss_pred -CCCccceEECCCCCEEEEEEc--cCCceEEEEEECCCCCEE-EccCCCCCCCceECCCCCEEEEEEe---cCCceEEEE
Confidence 222345789999988877764 333 6889999887653 3332223335689999999876521 112345777
Q ss_pred EECCCCceeecccCCCCceeEeEEcCC
Q 019847 266 WKYPNMTKVGELQSSNSRILDLSQSPD 292 (335)
Q Consensus 266 ~d~~~~~~~~~~~~~~~~i~~~~~~~~ 292 (335)
++... .....+..+.+.+...+|+|-
T Consensus 403 ~~~~g-~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 403 VSING-RVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred EECCC-CceEECcCCCCCcCCCccCCC
Confidence 77743 333445555566777788774
No 247
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.66 E-value=2.9e-12 Score=103.85 Aligned_cols=269 Identities=13% Similarity=0.054 Sum_probs=168.3
Q ss_pred CeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEEC----------CCcEEEEeCCCceeEeeeccccc----
Q 019847 36 PVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYM----------DSKLQLWDAETSKLVRNLEGHHR---- 101 (335)
Q Consensus 36 ~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------dg~i~iw~~~~~~~~~~~~~~~~---- 101 (335)
+.|.+.|.++.+.+..+... .....+ ++||++.|+++.. +..|.+||..+.+.+.++.....
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G---~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~ 102 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGG---FLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFL 102 (352)
T ss_pred ceEEEEECCCCEEEEEEEcc---CCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhh
Confidence 89999999999887766542 222344 9999998887765 67999999999999988874222
Q ss_pred ---ceeEeeecCCCCCEEEEee-C-CCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCC
Q 019847 102 ---RVATSSWNHWNGHILTSGS-K-DKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKM 176 (335)
Q Consensus 102 ---~v~~~~~~~~~~~~l~~~~-~-dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 176 (335)
....++++| ++++|+... . +..+.+.|+.+.+.+...-. .+...-...+++ ..++. +.||......+...
T Consensus 103 ~~~~~~~~~ls~-dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v--p~~~~vy~t~e~-~~~~~-~~Dg~~~~v~~d~~ 177 (352)
T TIGR02658 103 VGTYPWMTSLTP-DNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV--PDCYHIFPTAND-TFFMH-CRDGSLAKVGYGTK 177 (352)
T ss_pred ccCccceEEECC-CCCEEEEecCCCCCEEEEEECCCCcEEEEEeC--CCCcEEEEecCC-ccEEE-eecCceEEEEecCC
Confidence 334788899 888888766 3 68999999997765443322 222222222222 22222 23555444433322
Q ss_pred Ccccc--eeeccCCCCCee-EEEecC-CCCcEEEEecCCCCCeEEEEECCCC-----ceEEEeec--------CCcEeEE
Q 019847 177 SSSKS--LHRFTDHCGGVK-ALAWSP-HQVNVLATGGGREDGCIKIWNVQKG-----TCIHGIDA--------KAQICGL 239 (335)
Q Consensus 177 ~~~~~--~~~~~~~~~~v~-~~~~~~-~~~~~~~~~~g~~d~~i~i~d~~~~-----~~~~~~~~--------~~~~~~~ 239 (335)
..... ...+.....++. .-.+.+ ++..++++. .|.|.+.|+... +....+.. +.....+
T Consensus 178 g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~----eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~i 253 (352)
T TIGR02658 178 GNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTY----TGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQV 253 (352)
T ss_pred CceEEeeeeeecCCccccccCCceEcCCCcEEEEec----CCeEEEEecCCCcceecceeeeccccccccccCCCcceeE
Confidence 11110 111111011110 003455 776666664 599999996543 22222211 1223349
Q ss_pred EeCCCCceeeeeee-ee---eecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCC-EEEEEe-CCCcEEEEecCCC
Q 019847 240 EWNRHHKEILSGHG-FS---ASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGL-TVATAG-ADETIRFWEAFGP 313 (335)
Q Consensus 240 ~~~~~~~~~~~~~~-~~---~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~-~dg~v~iw~~~~~ 313 (335)
+++|+++.+++... -. --...+.|.++|..+++.+..+.. ...+..++++||++ +|++.. .++.|.+.|..+.
T Consensus 254 a~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~ 332 (352)
T TIGR02658 254 AYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETG 332 (352)
T ss_pred EEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCC
Confidence 99999998876310 00 001236899999999999988875 34688999999999 887776 5788999999887
Q ss_pred CCCCC
Q 019847 314 SGDED 318 (335)
Q Consensus 314 ~~~~~ 318 (335)
+....
T Consensus 333 k~i~~ 337 (352)
T TIGR02658 333 KELSS 337 (352)
T ss_pred eEEee
Confidence 66554
No 248
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.66 E-value=2e-13 Score=103.29 Aligned_cols=270 Identities=19% Similarity=0.217 Sum_probs=187.5
Q ss_pred CCeEEEEEecCCceeeEEeec-CCCCCceEEEEcC---CCC-EEEEEECCCcEEEEeCCCceeEeeecccc------cce
Q 019847 35 GPVLFLWKWENGKVKKLLQVP-GEDDYPTSVSWSH---DAK-TLAVGYMDSKLQLWDAETSKLVRNLEGHH------RRV 103 (335)
Q Consensus 35 ~~~i~vw~~~~~~~~~~~~~~-~~~~~v~~~~~~~---~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~------~~v 103 (335)
.|.+.+|++...+..+.-.+. ...+.+..+.|.. +|. .++-+..+|.|.++.....+....+++-. ...
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~ 124 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEA 124 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheee
Confidence 367899999887765522221 2345677888864 455 55667788999999876544443333221 135
Q ss_pred eEeeecCCCCCEEEEeeCCCcEEEEecccCC-eeeEEeecCCCCEEEEEeec-CCCEEEEEeCCCeEEEEEccCCCcccc
Q 019847 104 ATSSWNHWNGHILTSGSKDKSIINHDVRVSN-NVTSCIKAHSGEVCGLKWSN-EGNLLASGGDDNVVRIWERSKMSSSKS 181 (335)
Q Consensus 104 ~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~ 181 (335)
.++.|++ .+..++++..+|.+.+-+..... +..+..+.|+-+.+...|+. +.+++.+|+.|+.+..||+|.+. ...
T Consensus 125 lslD~~~-~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~-~~i 202 (339)
T KOG0280|consen 125 LSLDIST-SGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK-TFI 202 (339)
T ss_pred eEEEeec-cCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc-cee
Confidence 5778988 88889999999999855543222 22346888999999999987 56799999999999999999543 233
Q ss_pred eeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECC-CCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCC
Q 019847 182 LHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQ-KGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDG 260 (335)
Q Consensus 182 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (335)
.+..+-|...|.++.-+|..+..+++|+ .|..|++||.+ -++++..-...+.|..+.++|.-...+.+ +..-
T Consensus 203 ~~n~kvH~~GV~SI~ss~~~~~~I~TGs--YDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~-----~CMh 275 (339)
T KOG0280|consen 203 WHNSKVHTSGVVSIYSSPPKPTYIATGS--YDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLA-----ACMH 275 (339)
T ss_pred eecceeeecceEEEecCCCCCceEEEec--cccceeeeehhcccCccccCccccceEEEEecchhhhHHHH-----HHHh
Confidence 3445668899999999998888999987 99999999999 46788777778899999999976522211 1223
Q ss_pred CeEEEEECCCC--c---eeecccCCCCceeEeEEcCCCCEEEEEe-CCCcEE-EEecCCC
Q 019847 261 NKLCLWKYPNM--T---KVGELQSSNSRILDLSQSPDGLTVATAG-ADETIR-FWEAFGP 313 (335)
Q Consensus 261 ~~i~i~d~~~~--~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~v~-iw~~~~~ 313 (335)
+-.+|-+.... + .....+.|.+-...-.|.....+|+|++ .|..++ +|-.-++
T Consensus 276 ~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 276 NGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred cCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 44555554432 2 3344566777677777755556788875 466654 7755443
No 249
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=7.2e-14 Score=114.85 Aligned_cols=199 Identities=17% Similarity=0.281 Sum_probs=150.9
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEE---
Q 019847 63 SVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSC--- 139 (335)
Q Consensus 63 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~--- 139 (335)
.++++.-..-|..++....|+-++++.|+.+..+....+.++++..++ ...+|++|+.+|.|..||.+....+...
T Consensus 138 Dm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~-~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~ 216 (703)
T KOG2321|consen 138 DMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINE-EHGLLACGTEDGVVEFWDPRDKSRVGTLDAA 216 (703)
T ss_pred cccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecC-ccceEEecccCceEEEecchhhhhheeeecc
Confidence 344443223344444455799999999999999998889999999999 8889999999999999999865543221
Q ss_pred --eecCCC-----CEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCC-cEEEEecCC
Q 019847 140 --IKAHSG-----EVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQV-NVLATGGGR 211 (335)
Q Consensus 140 --~~~~~~-----~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~g~ 211 (335)
...|.+ .|+++.|+.+|-.+++|+.+|.+.|||++.... .+..-.+..-+|..+.|.+.+. .-+++.
T Consensus 217 ~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p--l~~kdh~~e~pi~~l~~~~~~~q~~v~S~--- 291 (703)
T KOG2321|consen 217 SSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP--LLVKDHGYELPIKKLDWQDTDQQNKVVSM--- 291 (703)
T ss_pred cccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc--eeecccCCccceeeecccccCCCceEEec---
Confidence 122333 499999999999999999999999999997432 2222233456789999977632 244443
Q ss_pred CCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCce
Q 019847 212 EDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTK 273 (335)
Q Consensus 212 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~ 273 (335)
....++|||-.+|+....++....+..+++-|++..++++ .++..+..|-+....+
T Consensus 292 Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~A------ne~~~m~~yyiP~LGP 347 (703)
T KOG2321|consen 292 DKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTA------NESSKMHTYYIPSLGP 347 (703)
T ss_pred chHHhhhcccccCCceeeccccCCcCceeeecCCceEEEe------cCCCcceeEEccccCC
Confidence 5788999999999999999998899999999999888877 5577777776655433
No 250
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.64 E-value=2e-11 Score=101.40 Aligned_cols=250 Identities=11% Similarity=0.150 Sum_probs=164.4
Q ss_pred cceeeeecC--CceEEEec----CCeEEEEEecC--CceeeEEeecCCCCCceEEEEcCCCCEEEEEE-CCCcEEEEeCC
Q 019847 18 YSKVIDWGR--NNVLAVAL----GPVLFLWKWEN--GKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGY-MDSKLQLWDAE 88 (335)
Q Consensus 18 ~~~~~~~~~--~~~~~~~~----~~~i~vw~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw~~~ 88 (335)
....+++++ +.++++.. ++.|..|++.. +++..+-+..........++++|++++|+++. .+|.|.++++.
T Consensus 38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~ 117 (345)
T PF10282_consen 38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLD 117 (345)
T ss_dssp SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEcc
Confidence 344566655 45666654 46999999886 45555444443445667899999999999987 48999999998
Q ss_pred C-ceeEee---ec----------ccccceeEeeecCCCCCEEEEee-CCCcEEEEecccCCe-ee---EEeecCCCCEEE
Q 019847 89 T-SKLVRN---LE----------GHHRRVATSSWNHWNGHILTSGS-KDKSIINHDVRVSNN-VT---SCIKAHSGEVCG 149 (335)
Q Consensus 89 ~-~~~~~~---~~----------~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~-~~---~~~~~~~~~i~~ 149 (335)
. +.+... +. .......++.++| +++++++.. ....|.+|++..... +. ..........+.
T Consensus 118 ~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh 196 (345)
T PF10282_consen 118 DDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRH 196 (345)
T ss_dssp TTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEE
T ss_pred CCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcE
Confidence 6 433322 11 1234577899999 877776654 445899999976552 21 112234566889
Q ss_pred EEeecCCCEEEEEe-CCCeEEEEEccCCC-cccceeeccC------CCCCeeEEEecCCCCcEEEEecCCCCCeEEEEEC
Q 019847 150 LKWSNEGNLLASGG-DDNVVRIWERSKMS-SSKSLHRFTD------HCGGVKALAWSPHQVNVLATGGGREDGCIKIWNV 221 (335)
Q Consensus 150 ~~~~~~~~~l~~~~-~dg~i~iwd~~~~~-~~~~~~~~~~------~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~ 221 (335)
++|+|+++++.+.. .++.|.++++.... ....++.... .......+.++|++++++++.. ..+.|.+|++
T Consensus 197 ~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr--~~~sI~vf~~ 274 (345)
T PF10282_consen 197 LAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNR--GSNSISVFDL 274 (345)
T ss_dssp EEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEEC--TTTEEEEEEE
T ss_pred EEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEec--cCCEEEEEEE
Confidence 99999999876655 46789999988211 2222222211 1125778999999999988876 6889999999
Q ss_pred C--CCc--eEEEeec-CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEEC--CCCceee
Q 019847 222 Q--KGT--CIHGIDA-KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKY--PNMTKVG 275 (335)
Q Consensus 222 ~--~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~--~~~~~~~ 275 (335)
. +++ .+..+.. ......+.++|+|++++++. ..++.|.+|++ .++.+..
T Consensus 275 d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~-----~~s~~v~vf~~d~~tG~l~~ 330 (345)
T PF10282_consen 275 DPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVAN-----QDSNTVSVFDIDPDTGKLTP 330 (345)
T ss_dssp CTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEE-----TTTTEEEEEEEETTTTEEEE
T ss_pred ecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEe-----cCCCeEEEEEEeCCCCcEEE
Confidence 3 333 3344444 34589999999999998764 57889999976 4555443
No 251
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.63 E-value=1.2e-14 Score=122.77 Aligned_cols=288 Identities=15% Similarity=0.222 Sum_probs=199.1
Q ss_pred cccceeeeecC--CceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCC--CCEEEEEECCCcEEEEeCCC--
Q 019847 16 DYYSKVIDWGR--NNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHD--AKTLAVGYMDSKLQLWDAET-- 89 (335)
Q Consensus 16 ~~~~~~~~~~~--~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iw~~~~-- 89 (335)
+..+.+++.++ ..++.++.- .+.+.|++..-..+..-..-..-.|-...|+|. -.+-++......-.+|++..
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~-gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss 102 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQ-GLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS 102 (1081)
T ss_pred cCcccceeeccccchhhhhhhc-CeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence 33444555555 334444433 466777764322222111111234667788874 34556666666788998853
Q ss_pred -ceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeE
Q 019847 90 -SKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVV 168 (335)
Q Consensus 90 -~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 168 (335)
......+.+|...|+.+-|+|.....+++++.|-.+..||++...........-......++|+.....+.+.+....|
T Consensus 103 ~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i 182 (1081)
T KOG0309|consen 103 SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDI 182 (1081)
T ss_pred ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCce
Confidence 3344456789999999999999999999999999999999998877777666666777889999854445555667789
Q ss_pred EEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCc--eEEEeecCCcEeEEEeCCCCc
Q 019847 169 RIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGT--CIHGIDAKAQICGLEWNRHHK 246 (335)
Q Consensus 169 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~ 246 (335)
++||++.+. .++..+++|...|+.+.|...-...+.+++ .|++++.||..+.. ..+......++..-.+.|-|+
T Consensus 183 ~vwd~r~gs--~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~--~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~ 258 (1081)
T KOG0309|consen 183 FVWDLRKGS--TPLCSLKGHVSSVNSIDFNRFKYSEIMSSS--NDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGE 258 (1081)
T ss_pred EEEeccCCC--cceEEecccceeeehHHHhhhhhhhhcccC--CCCceeeecccccccccceeccccCcceeccccccCc
Confidence 999999864 467778889999999999876555555555 89999999987653 334455566777777888776
Q ss_pred eeeeeeeeeeecCCCeEEEEECC----------CCceeecccCCCCceeEeEEcCCC----------CEEEEEeCCCcEE
Q 019847 247 EILSGHGFSASGDGNKLCLWKYP----------NMTKVGELQSSNSRILDLSQSPDG----------LTVATAGADETIR 306 (335)
Q Consensus 247 ~~~~~~~~~~~~~~~~i~i~d~~----------~~~~~~~~~~~~~~i~~~~~~~~~----------~~l~~~~~dg~v~ 306 (335)
-...... -.++.+.+++.+ ..+++.++.+|...|....|-..+ -.|+|-+.|..++
T Consensus 259 g~~~mp~----~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lr 334 (1081)
T KOG0309|consen 259 GYCIMPM----VGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLR 334 (1081)
T ss_pred eeEeccc----cCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceE
Confidence 5543311 113345554433 256788999999988877775432 3699999999999
Q ss_pred EEecCC
Q 019847 307 FWEAFG 312 (335)
Q Consensus 307 iw~~~~ 312 (335)
+|.+.+
T Consensus 335 lWpI~~ 340 (1081)
T KOG0309|consen 335 LWPIDS 340 (1081)
T ss_pred eeeccH
Confidence 998875
No 252
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=1.4e-12 Score=111.72 Aligned_cols=238 Identities=15% Similarity=0.110 Sum_probs=143.7
Q ss_pred cEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeC-CC--cEEEEecccCCeeeEEeecCCCCEEEEEeecCCC
Q 019847 81 KLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSK-DK--SIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGN 157 (335)
Q Consensus 81 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg--~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 157 (335)
.|.++|....+. +.+......+....|+| +++.|+..+. ++ .|.++|+.+++. ..+....+.....+|+|||+
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSP-DG~~La~~s~~~g~~~L~~~dl~tg~~--~~lt~~~g~~~~~~wSPDG~ 274 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSP-DGRKLAYVSFENRKAEIFVQDIYTQVR--EKVTSFPGINGAPRFSPDGK 274 (448)
T ss_pred EEEEEeCCCCCc-eEeecCCCcccCceECC-CCCEEEEEEecCCCcEEEEEECCCCCe--EEecCCCCCcCCeeECCCCC
Confidence 567778654433 44555677889999999 8887776543 33 588889876553 22222333445789999999
Q ss_pred EEEE-EeCCCe--EEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCC
Q 019847 158 LLAS-GGDDNV--VRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKA 234 (335)
Q Consensus 158 ~l~~-~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~ 234 (335)
.|+. .+.+|. |+++|+.+.. ...+..+........|+|+++.++.+........|+++|+.+++.........
T Consensus 275 ~La~~~~~~g~~~Iy~~dl~tg~----~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~ 350 (448)
T PRK04792 275 KLALVLSKDGQPEIYVVDIATKA----LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGE 350 (448)
T ss_pred EEEEEEeCCCCeEEEEEECCCCC----eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCC
Confidence 8875 455664 7777876532 33334444556778999999888777641122457777888776543322222
Q ss_pred cEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeC-CCc--EEEEecC
Q 019847 235 QICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGA-DET--IRFWEAF 311 (335)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~--v~iw~~~ 311 (335)
......|+|+|+.++.... ......|.++|+.+++... +.... ......|+|||+.|+..+. +|. +.+++..
T Consensus 351 ~~~~~~~SpDG~~l~~~~~---~~g~~~I~~~dl~~g~~~~-lt~~~-~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~ 425 (448)
T PRK04792 351 QNLGGSITPDGRSMIMVNR---TNGKFNIARQDLETGAMQV-LTSTR-LDESPSVAPNGTMVIYSTTYQGKQVLAAVSID 425 (448)
T ss_pred CCcCeeECCCCCEEEEEEe---cCCceEEEEEECCCCCeEE-ccCCC-CCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 3345789999998876421 0112356667887776532 22221 1234589999998876654 343 6666764
Q ss_pred CCCCCCCccccccccccceec
Q 019847 312 GPSGDEDSVSHLAGLVSLKTS 332 (335)
Q Consensus 312 ~~~~~~~~~~~~~~i~~~~~~ 332 (335)
+.. ......+.+.+....++
T Consensus 426 G~~-~~~l~~~~g~~~~p~Ws 445 (448)
T PRK04792 426 GRF-KARLPAGQGEVKSPAWS 445 (448)
T ss_pred CCc-eEECcCCCCCcCCCccC
Confidence 432 22232333334444443
No 253
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.62 E-value=3.4e-12 Score=103.07 Aligned_cols=224 Identities=13% Similarity=0.155 Sum_probs=152.7
Q ss_pred cccceeeeecCCceEEEecCCeEEEEEecCCceeeEE-eecCC---C-----CCceEEE-EcC-CCCEEEEEECCCcEEE
Q 019847 16 DYYSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLL-QVPGE---D-----DYPTSVS-WSH-DAKTLAVGYMDSKLQL 84 (335)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~i~vw~~~~~~~~~~~-~~~~~---~-----~~v~~~~-~~~-~~~~l~~~~~dg~i~i 84 (335)
++++.-+. +++..++.+..|.|++||.++.++.++- .++-. . .+..-+. |++ +|++++..+ .|...|
T Consensus 268 dYY~R~~n-sDGkrIvFq~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi 345 (668)
T COG4946 268 DYYPRNAN-SDGKRIVFQNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-RGKAFI 345 (668)
T ss_pred hccccccC-CCCcEEEEecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe-cCcEEE
Confidence 44444443 3345666778899999999887754321 11110 0 1111111 444 788888886 577888
Q ss_pred EeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCC-cEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEe
Q 019847 85 WDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDK-SIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGG 163 (335)
Q Consensus 85 w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 163 (335)
.+...+-.++ + ++...|.-..+.. +++-++.|..|| .+-++|.++++ .+.+...-+.|.++..+|+|++++++.
T Consensus 346 ~~~~~~~~iq-v-~~~~~VrY~r~~~-~~e~~vigt~dgD~l~iyd~~~~e--~kr~e~~lg~I~av~vs~dGK~~vvaN 420 (668)
T COG4946 346 MRPWDGYSIQ-V-GKKGGVRYRRIQV-DPEGDVIGTNDGDKLGIYDKDGGE--VKRIEKDLGNIEAVKVSPDGKKVVVAN 420 (668)
T ss_pred ECCCCCeeEE-c-CCCCceEEEEEcc-CCcceEEeccCCceEEEEecCCce--EEEeeCCccceEEEEEcCCCcEEEEEc
Confidence 8766554443 2 3566788888877 777899999999 89999998554 344556778899999999999999999
Q ss_pred CCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEec-CCCCCeEEEEECCCCceEEEeecCCcEeEEEeC
Q 019847 164 DDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGG-GREDGCIKIWNVQKGTCIHGIDAKAQICGLEWN 242 (335)
Q Consensus 164 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 242 (335)
....+.+.|+.++.. ...-+...+-|+.+.|+|++.+++.+-- |.....|+++|+.+++..........-.+-+|.
T Consensus 421 dr~el~vididngnv---~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD 497 (668)
T COG4946 421 DRFELWVIDIDNGNV---RLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFD 497 (668)
T ss_pred CceEEEEEEecCCCe---eEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccC
Confidence 889999999987543 2222335567999999999976655431 223457999999988776655544444556677
Q ss_pred CCCceee
Q 019847 243 RHHKEIL 249 (335)
Q Consensus 243 ~~~~~~~ 249 (335)
|++++|.
T Consensus 498 ~d~ryLY 504 (668)
T COG4946 498 PDGRYLY 504 (668)
T ss_pred CCCcEEE
Confidence 7776654
No 254
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.60 E-value=8.8e-12 Score=101.12 Aligned_cols=230 Identities=13% Similarity=0.126 Sum_probs=154.0
Q ss_pred cCCeEEEEEecCCceeeEEeecCC-----CCCceEEEEcCCCCEEEEEE-C-CCcEEEEeCCCceeEeeecccccceeEe
Q 019847 34 LGPVLFLWKWENGKVKKLLQVPGE-----DDYPTSVSWSHDAKTLAVGY-M-DSKLQLWDAETSKLVRNLEGHHRRVATS 106 (335)
Q Consensus 34 ~~~~i~vw~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~-~-dg~i~iw~~~~~~~~~~~~~~~~~v~~~ 106 (335)
.+..|.+||..+.+....+.++.. ......++++|||++|++.. . +..|.+.|+.+++.+.++... ++..-.
T Consensus 75 ~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp-~~~~vy 153 (352)
T TIGR02658 75 RTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVP-DCYHIF 153 (352)
T ss_pred CCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCC-CCcEEE
Confidence 468999999999998777765422 22345789999999999876 3 689999999999999988742 222222
Q ss_pred eecCCCCCEEEEeeCCCcEEEEecccCCeeeE-E---eec-----CCCCEEEEEeec-CCCEEEEEeCCCeEEEEEccCC
Q 019847 107 SWNHWNGHILTSGSKDKSIINHDVRVSNNVTS-C---IKA-----HSGEVCGLKWSN-EGNLLASGGDDNVVRIWERSKM 176 (335)
Q Consensus 107 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~-~---~~~-----~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~ 176 (335)
..++ .. +..-+.||......+........ . +.. ...+ .|.+ +++++.+..+ |.|.+.|+...
T Consensus 154 ~t~e-~~--~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~ 225 (352)
T TIGR02658 154 PTAN-DT--FFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHP----AYSNKSGRLVWPTYT-GKIFQIDLSSG 225 (352)
T ss_pred EecC-Cc--cEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCC----ceEcCCCcEEEEecC-CeEEEEecCCC
Confidence 2222 22 22334566555554443332111 0 101 0112 3456 7887777665 99999996542
Q ss_pred Cc--ccceeeccC-------CCCCeeEEEecCCCCcEEEEecC-------CCCCeEEEEECCCCceEEEeecCCcEeEEE
Q 019847 177 SS--SKSLHRFTD-------HCGGVKALAWSPHQVNVLATGGG-------REDGCIKIWNVQKGTCIHGIDAKAQICGLE 240 (335)
Q Consensus 177 ~~--~~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~g-------~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 240 (335)
.. ...+..+.. ..+...-++++|+++++++...+ ...+.|.++|..+++.+..+.....+..++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~ia 305 (352)
T TIGR02658 226 DAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSIN 305 (352)
T ss_pred cceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEE
Confidence 21 111221111 23334459999999988885311 012689999999999999999999999999
Q ss_pred eCCCCc-eeeeeeeeeeecCCCeEEEEECCCCceeecc
Q 019847 241 WNRHHK-EILSGHGFSASGDGNKLCLWKYPNMTKVGEL 277 (335)
Q Consensus 241 ~~~~~~-~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~ 277 (335)
++|+++ .+++. ...++.|.++|..+++.+.++
T Consensus 306 vS~Dgkp~lyvt-----n~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 306 VSQDAKPLLYAL-----STGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred ECCCCCeEEEEe-----CCCCCcEEEEECcCCeEEeee
Confidence 999999 66544 246888999999999998887
No 255
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.60 E-value=2.3e-12 Score=104.68 Aligned_cols=282 Identities=16% Similarity=0.200 Sum_probs=182.8
Q ss_pred ccccceeeeecCC-ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECC--------------
Q 019847 15 EDYYSKVIDWGRN-NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMD-------------- 79 (335)
Q Consensus 15 ~~~~~~~~~~~~~-~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------------- 79 (335)
.+.++...+|+|. .+++...-..|.+|.-..... +..+. ...|..+.|+|.++||.+=+..
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~--l~~~~--~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~ 106 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAGVECWGGPSKAK--LVRFR--HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTS 106 (561)
T ss_pred cCcchhheeecCcchheehhhccceEEccccchhh--eeeee--cCCceecccCcccceeeeeccCCccChhhccCCccc
Confidence 5677888999994 566666677899999776653 33332 2458999999999999985432
Q ss_pred -CcEEEEeCCCceeEeeecccccc--ee-EeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEee-cCCCCEEEEEeec
Q 019847 80 -SKLQLWDAETSKLVRNLEGHHRR--VA-TSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIK-AHSGEVCGLKWSN 154 (335)
Q Consensus 80 -g~i~iw~~~~~~~~~~~~~~~~~--v~-~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~-~~~~~i~~~~~~~ 154 (335)
..+.+||..+|..+..+.....+ .+ -+.|+. ++.+++-- ....+.++++ +.......+. -....|....|+|
T Consensus 107 ~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~-~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP 183 (561)
T COG5354 107 KNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSI-DDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISP 183 (561)
T ss_pred cCceeEEeccCceeEeeccccCCcccccceeeeee-cchhhhhh-ccCeEEEEec-CCccccCchhhccccceeeEEecC
Confidence 35999999999999988766555 44 567776 55554433 3445777775 2211000000 0123344444444
Q ss_pred CC--CEEEE-----EeCCCeEEEE-----------------------------------------------------Ecc
Q 019847 155 EG--NLLAS-----GGDDNVVRIW-----------------------------------------------------ERS 174 (335)
Q Consensus 155 ~~--~~l~~-----~~~dg~i~iw-----------------------------------------------------d~~ 174 (335)
.+ ..||. ...++.+++| +++
T Consensus 184 ~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~ 263 (561)
T COG5354 184 EGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRIT 263 (561)
T ss_pred CCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeec
Confidence 21 12222 1223344444 333
Q ss_pred CCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeee
Q 019847 175 KMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGF 254 (335)
Q Consensus 175 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (335)
.. .+.......++|...+|.|.+..+.++. |..+-.+.++|++.. +...-....-..+.|+|.+++++...
T Consensus 264 e~----~i~V~~~~~~pVhdf~W~p~S~~F~vi~-g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp~~r~il~ag-- 334 (561)
T COG5354 264 ER----SIPVEKDLKDPVHDFTWEPLSSRFAVIS-GYMPASVSVFDLRGN--LRFYFPEQKRNTIFFSPHERYILFAG-- 334 (561)
T ss_pred cc----ccceeccccccceeeeecccCCceeEEe-cccccceeecccccc--eEEecCCcccccccccCcccEEEEec--
Confidence 11 1111123578899999999998777766 668999999999865 44444455667788999999987631
Q ss_pred eeecCCCeEEEEECCCCceee-cccCCCCceeEeEEcCCCCEEEEEe------CCCcEEEEecCCCCC
Q 019847 255 SASGDGNKLCLWKYPNMTKVG-ELQSSNSRILDLSQSPDGLTVATAG------ADETIRFWEAFGPSG 315 (335)
Q Consensus 255 ~~~~~~~~i~i~d~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~------~dg~v~iw~~~~~~~ 315 (335)
.+...|.+.+||......+. .+.+.. .+-+.|+||++++.+.. .|..+.||++.+.+.
T Consensus 335 -F~nl~gni~i~~~~~rf~~~~~~~~~n--~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~ 399 (561)
T COG5354 335 -FDNLQGNIEIFDPAGRFKVAGAFNGLN--TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKV 399 (561)
T ss_pred -CCccccceEEeccCCceEEEEEeecCC--ceEeeccCCceEEEecCCCcccccCcceEEEEecCchh
Confidence 12446899999987765544 555543 34467999999998774 478899999987643
No 256
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=3.2e-12 Score=104.96 Aligned_cols=287 Identities=16% Similarity=0.253 Sum_probs=188.3
Q ss_pred ceeeeecCC--ceEEEec-----------CCeEEEEEecCCceeeEEeecCCCCC-ceEEEEcCCCCEEEEEECCCcEEE
Q 019847 19 SKVIDWGRN--NVLAVAL-----------GPVLFLWKWENGKVKKLLQVPGEDDY-PTSVSWSHDAKTLAVGYMDSKLQL 84 (335)
Q Consensus 19 ~~~~~~~~~--~~~~~~~-----------~~~i~vw~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~dg~i~i 84 (335)
+..++|+|+ ++++.+. ...+.|||+.+|...+.+........ -.-..||.|++|+|.-..+ .|.|
T Consensus 252 Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisI 330 (698)
T KOG2314|consen 252 VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISI 330 (698)
T ss_pred ceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc-eEEE
Confidence 556788885 4554442 25899999999998776665322222 2346899999999988765 6999
Q ss_pred EeCCCceeEeeecccccceeEeeecCCCCCEEEEeeC-----CCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEE
Q 019847 85 WDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSK-----DKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLL 159 (335)
Q Consensus 85 w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 159 (335)
|+..+..++..-.-.-..|....|+| .+++||-=.. -..+.+..+.+.+. ++...-|.-.=..+.|..+|.+|
T Consensus 331 yEtpsf~lld~Kslki~gIr~FswsP-~~~llAYwtpe~~~~parvtL~evPs~~~-iRt~nlfnVsDckLhWQk~gdyL 408 (698)
T KOG2314|consen 331 YETPSFMLLDKKSLKISGIRDFSWSP-TSNLLAYWTPETNNIPARVTLMEVPSKRE-IRTKNLFNVSDCKLHWQKSGDYL 408 (698)
T ss_pred EecCceeeecccccCCccccCcccCC-CcceEEEEcccccCCcceEEEEecCccce-eeeccceeeeccEEEeccCCcEE
Confidence 99887665554444557899999999 7777764321 12455555554443 22222233333457788888888
Q ss_pred EEEeC-------C---CeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCC-C---c
Q 019847 160 ASGGD-------D---NVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQK-G---T 225 (335)
Q Consensus 160 ~~~~~-------d---g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-~---~ 225 (335)
+.--. . ..+.|+.++.... ++... .-...|...+|-|.|..+.+..+.....++.+|-+++ . +
T Consensus 409 cvkvdR~tK~~~~g~f~n~eIfrireKdI--pve~v-elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~ 485 (698)
T KOG2314|consen 409 CVKVDRHTKSKVKGQFSNLEIFRIREKDI--PVEVV-ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPS 485 (698)
T ss_pred EEEEEeeccccccceEeeEEEEEeeccCC--Cceee-ecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchh
Confidence 76321 1 2355666665332 22222 2457789999999999888877644557888998873 2 2
Q ss_pred eEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeC----
Q 019847 226 CIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGA---- 301 (335)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---- 301 (335)
.+..++. ...+.+.|+|.|++++.+.. .+..|.+.++|+........-.......+.+.|.|.|+|+++++.
T Consensus 486 lVk~~dk-~~~N~vfwsPkG~fvvva~l---~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrh 561 (698)
T KOG2314|consen 486 LVKELDK-KFANTVFWSPKGRFVVVAAL---VSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRH 561 (698)
T ss_pred hhhhhcc-cccceEEEcCCCcEEEEEEe---cccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeehhhh
Confidence 2333332 56788999999999988742 247899999998753332222222234688999999999999874
Q ss_pred --CCcEEEEecCCCCC
Q 019847 302 --DETIRFWEAFGPSG 315 (335)
Q Consensus 302 --dg~v~iw~~~~~~~ 315 (335)
|.--++|++.+...
T Consensus 562 k~d~GYri~tfqGrll 577 (698)
T KOG2314|consen 562 KVDNGYRIFTFQGRLL 577 (698)
T ss_pred ccccceEEEEeecHHH
Confidence 55567888876543
No 257
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=1.8e-12 Score=110.14 Aligned_cols=226 Identities=17% Similarity=0.164 Sum_probs=139.0
Q ss_pred CcEEEEeCCCceeEeeecccccceeEeeecCCCCCE---EEEeeCCC--cEEEEecccCCeeeEEeecCCCCEEEEEeec
Q 019847 80 SKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHI---LTSGSKDK--SIINHDVRVSNNVTSCIKAHSGEVCGLKWSN 154 (335)
Q Consensus 80 g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---l~~~~~dg--~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~ 154 (335)
..|.+.|...++. +.+.........-.|+| +++. +++...+| .|.+.++..+.. ..+....+.....+|+|
T Consensus 165 ~~l~~~d~dG~~~-~~lt~~~~~~~sP~wSP-DG~~~~~~y~S~~~g~~~I~~~~l~~g~~--~~lt~~~g~~~~p~wSP 240 (428)
T PRK01029 165 GELWSVDYDGQNL-RPLTQEHSLSITPTWMH-IGSGFPYLYVSYKLGVPKIFLGSLENPAG--KKILALQGNQLMPTFSP 240 (428)
T ss_pred ceEEEEcCCCCCc-eEcccCCCCcccceEcc-CCCceEEEEEEccCCCceEEEEECCCCCc--eEeecCCCCccceEECC
Confidence 3677777765443 44554556677889999 7753 33555554 577778775542 23334555666789999
Q ss_pred CCCEEEEEeC-CC----eEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCe--EEEEECCC-Cce
Q 019847 155 EGNLLASGGD-DN----VVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGC--IKIWNVQK-GTC 226 (335)
Q Consensus 155 ~~~~l~~~~~-dg----~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~--i~i~d~~~-~~~ 226 (335)
||+.|+..+. +| .+..|++......................+|+|||+.++.+.. .+|. |+++++.. +..
T Consensus 241 DG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~--~~g~~~ly~~~~~~~g~~ 318 (428)
T PRK01029 241 RKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSN--KDGRPRIYIMQIDPEGQS 318 (428)
T ss_pred CCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEEC--CCCCceEEEEECcccccc
Confidence 9998887653 22 3444676543212222222222234467899999988887764 4564 44445532 222
Q ss_pred EEEeec-CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeC---C
Q 019847 227 IHGIDA-KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGA---D 302 (335)
Q Consensus 227 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---d 302 (335)
...+.. ...+....|+|+|+.++.... ......|.+||+.+++.... ......+....|+|||+.|+.... .
T Consensus 319 ~~~lt~~~~~~~~p~wSPDG~~Laf~~~---~~g~~~I~v~dl~~g~~~~L-t~~~~~~~~p~wSpDG~~L~f~~~~~g~ 394 (428)
T PRK01029 319 PRLLTKKYRNSSCPAWSPDGKKIAFCSV---IKGVRQICVYDLATGRDYQL-TTSPENKESPSWAIDSLHLVYSAGNSNE 394 (428)
T ss_pred eEEeccCCCCccceeECCCCCEEEEEEc---CCCCcEEEEEECCCCCeEEc-cCCCCCccceEECCCCCEEEEEECCCCC
Confidence 333332 345678899999998876421 11235799999988876433 323345678999999998875432 3
Q ss_pred CcEEEEecCCCCC
Q 019847 303 ETIRFWEAFGPSG 315 (335)
Q Consensus 303 g~v~iw~~~~~~~ 315 (335)
..|.++++.+++.
T Consensus 395 ~~L~~vdl~~g~~ 407 (428)
T PRK01029 395 SELYLISLITKKT 407 (428)
T ss_pred ceEEEEECCCCCE
Confidence 4688888877654
No 258
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.59 E-value=7.2e-13 Score=109.38 Aligned_cols=187 Identities=16% Similarity=0.226 Sum_probs=150.8
Q ss_pred ceEEEecCCeEEEEEecCCceeeEEeecCC-CCCceEEEEc------C--------------CCCEEEEEECCCcEEEEe
Q 019847 28 NVLAVALGPVLFLWKWENGKVKKLLQVPGE-DDYPTSVSWS------H--------------DAKTLAVGYMDSKLQLWD 86 (335)
Q Consensus 28 ~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~-~~~v~~~~~~------~--------------~~~~l~~~~~dg~i~iw~ 86 (335)
.++....||.+++|+...++....+.-..| .+..++..|. | +...++-|...|.|.+|+
T Consensus 7 ~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys 86 (541)
T KOG4547|consen 7 YFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLYS 86 (541)
T ss_pred eEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEEE
Confidence 455567899999999998887554433222 2334444442 1 344778888999999999
Q ss_pred CCCceeEeeec--ccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeC
Q 019847 87 AETSKLVRNLE--GHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGD 164 (335)
Q Consensus 87 ~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 164 (335)
+..++....+. .|.+.|.++.++. +-..|.+++.|+.+..|+.... ...+........+.+++.+||+..+++++
T Consensus 87 ~~~g~it~~~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~~-~~~~~~~~~~~~~~sl~is~D~~~l~~as- 163 (541)
T KOG4547|consen 87 VAGGEITAKLSTDKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKEK-VIIRIWKEQKPLVSSLCISPDGKILLTAS- 163 (541)
T ss_pred ecCCeEEEEEecCCCCCcceeeeccc-ccCceEecCCceeEEEEecccc-eeeeeeccCCCccceEEEcCCCCEEEecc-
Confidence 99999888876 6889999999988 8889999999999999999744 45777788888999999999999999887
Q ss_pred CCeEEEEEccCCCcccceeeccCCCCCeeEEEecCC-----CCcEEEEecCCCCCeEEEEECCC
Q 019847 165 DNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPH-----QVNVLATGGGREDGCIKIWNVQK 223 (335)
Q Consensus 165 dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~~~g~~d~~i~i~d~~~ 223 (335)
+.|++||+++ .+.+..|.+|.++|+++.|..+ |.+++++.. .+..+.+|-.+.
T Consensus 164 -~~ik~~~~~~---kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~--~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 164 -RQIKVLDIET---KEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAA--AERGITVWVVEK 221 (541)
T ss_pred -ceEEEEEccC---ceEEEEecCCCcceEEEEEEEeccccccceeeeccc--cccceeEEEEEc
Confidence 6899999887 5679999999999999999877 778888776 677788887654
No 259
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=5.6e-13 Score=112.68 Aligned_cols=281 Identities=16% Similarity=0.248 Sum_probs=198.0
Q ss_pred CCcccccceeeeecCC--ceEEEecCCeEEEEEecCCce-------------eeEEeecCCCCCceEEEEcCCCCEEEEE
Q 019847 12 YLMEDYYSKVIDWGRN--NVLAVALGPVLFLWKWENGKV-------------KKLLQVPGEDDYPTSVSWSHDAKTLAVG 76 (335)
Q Consensus 12 ~~~~~~~~~~~~~~~~--~~~~~~~~~~i~vw~~~~~~~-------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 76 (335)
.+|......|++|+.+ .+++++.||.+++..+.+... .--.++.||+..|.-+.|+.+.+.|-++
T Consensus 10 ~iPnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtS 89 (1189)
T KOG2041|consen 10 GIPNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTS 89 (1189)
T ss_pred CCCCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccccccccc
Confidence 5677788899999984 566677999999998875321 1123567999999999999999999999
Q ss_pred ECCCcEEEEeCCCceeEeeec--ccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeec
Q 019847 77 YMDSKLQLWDAETSKLVRNLE--GHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSN 154 (335)
Q Consensus 77 ~~dg~i~iw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~ 154 (335)
..+|.|.+|-+-.|....++. ...+.|.+++|+. +|..+.....||.|.+=.++..+.--+.+.+ .....+.|++
T Consensus 90 Dt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~-dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ws~ 166 (1189)
T KOG2041|consen 90 DTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL-DGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVLWSE 166 (1189)
T ss_pred CCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcC-CCcEEEEEEccCCEEEEeeccceecchhcch--heccceeecc
Confidence 999999999998887655543 2456799999999 9999999999999988776633221111211 2234688999
Q ss_pred CCCEEEEEeCCCeEEEEEccCCCcccc--------eeeccCCCCCeeEEEec--------CCCCcEEEEecCCCCCeEEE
Q 019847 155 EGNLLASGGDDNVVRIWERSKMSSSKS--------LHRFTDHCGGVKALAWS--------PHQVNVLATGGGREDGCIKI 218 (335)
Q Consensus 155 ~~~~l~~~~~dg~i~iwd~~~~~~~~~--------~~~~~~~~~~v~~~~~~--------~~~~~~~~~~~g~~d~~i~i 218 (335)
|.+.++.+-..|.+.+||....-..+. ...+......|..+.|. |+.+.++++. .+|.+.+
T Consensus 167 D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy---~nGr~Qi 243 (1189)
T KOG2041|consen 167 DLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCY---ANGRMQI 243 (1189)
T ss_pred cHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEE---cCceehh
Confidence 999888888899999999653211110 00111122235556663 4666565554 6899998
Q ss_pred EECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeee---cCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCE
Q 019847 219 WNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSAS---GDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLT 295 (335)
Q Consensus 219 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 295 (335)
..-.+...-..+..+-.+....|+++|..++++..-... .+.+.|++|. .-|+.+.+++.....|++++|-..|-.
T Consensus 244 MR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~gLr 322 (1189)
T KOG2041|consen 244 MRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGTGLR 322 (1189)
T ss_pred hhhcCCCCCeEEecccEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcCCceE
Confidence 877766666666667789999999999999875321100 1124566665 457788888888888999999776655
Q ss_pred EEEE
Q 019847 296 VATA 299 (335)
Q Consensus 296 l~~~ 299 (335)
++.+
T Consensus 323 iA~A 326 (1189)
T KOG2041|consen 323 IAIA 326 (1189)
T ss_pred EEEE
Confidence 5443
No 260
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.57 E-value=5e-13 Score=117.08 Aligned_cols=266 Identities=14% Similarity=0.232 Sum_probs=178.8
Q ss_pred ceEEEecCCeEEEEEecCCceeeEEe----ecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccce
Q 019847 28 NVLAVALGPVLFLWKWENGKVKKLLQ----VPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRV 103 (335)
Q Consensus 28 ~~~~~~~~~~i~vw~~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v 103 (335)
.++.++....|.+||+..+..+..+. .+.|...-.- .-.+.+++++..-+.+..=+... +.... -...+
T Consensus 18 ~~llag~gp~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~---~l~~~~~v~~~~~~~v~~~~~~~-~~~~~---~s~wi 90 (967)
T KOG0974|consen 18 DYLLAGSGPEILVYDLSSGCLIRHLIQSKILEVHRGEGKV---KLLSGKIVTCAKSDEVYVKEASN-QIIER---FSDWI 90 (967)
T ss_pred ceeeecCCCceEEeeCCchhHhhhhhhhcccccccccccc---eeccceEEEEEeecceeecchhh-hhhhh---ccccc
Confidence 45666677899999999886543322 1233000000 01233555555444444333221 11111 22333
Q ss_pred eEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCC---EEEEEeecCCCEEEEEeCCCeEEEEEccCCCccc
Q 019847 104 ATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGE---VCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSK 180 (335)
Q Consensus 104 ~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~---i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 180 (335)
....+.. +...++.++.++.+.+||................. ..-+.++++.-++++|+.-+.|.+|+....+ .
T Consensus 91 ~g~~l~~-e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn--~ 167 (967)
T KOG0974|consen 91 FGAKLFE-ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN--K 167 (967)
T ss_pred cccchhh-hcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC--C
Confidence 3344444 77888899999999999987554333322111111 1123346677799999999999999987322 2
Q ss_pred ceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEE--EeecCCcEeEEEeCCCCceeeeeeeeeeec
Q 019847 181 SLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIH--GIDAKAQICGLEWNRHHKEILSGHGFSASG 258 (335)
Q Consensus 181 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (335)
+. .+.+|.+.|.++.++.+|.+++. .+ +|.++|+|++++.+... -+.+...+..+.+.|+ .++++ +
T Consensus 168 p~-~l~GHeG~iF~i~~s~dg~~i~s-~S--dDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~------g 235 (967)
T KOG0974|consen 168 PI-RLKGHEGSIFSIVTSLDGRYIAS-VS--DDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITV------G 235 (967)
T ss_pred cc-eecccCCceEEEEEccCCcEEEE-Ee--cCcceeeeecccccccCcccccccceeEEEEeccc--eeEEe------c
Confidence 22 67899999999999999965555 44 89999999999987765 4556778999999999 66665 8
Q ss_pred CCCeEEEEECCCCceeecccCCCC-ceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCC
Q 019847 259 DGNKLCLWKYPNMTKVGELQSSNS-RILDLSQSPDGLTVATAGADETIRFWEAFGPSGD 316 (335)
Q Consensus 259 ~~~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~ 316 (335)
+|.+.++|+. +++.+..+..|.. .|..++..++...++|++.||.+++|++......
T Consensus 236 edctcrvW~~-~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~~e 293 (967)
T KOG0974|consen 236 EDCTCRVWGV-NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRGLE 293 (967)
T ss_pred cceEEEEEec-ccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhccccc
Confidence 8999999975 4455557777765 6899999999999999999999999998875443
No 261
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.56 E-value=4.7e-14 Score=129.62 Aligned_cols=194 Identities=18% Similarity=0.323 Sum_probs=154.1
Q ss_pred ceeeeecC--CceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeee
Q 019847 19 SKVIDWGR--NNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNL 96 (335)
Q Consensus 19 ~~~~~~~~--~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 96 (335)
+.++.-++ ..+++++.||.|++|....++....++..+. ..|+.+.|+.+|+.+..+..||.+.+|... .++....
T Consensus 2211 v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~ 2288 (2439)
T KOG1064|consen 2211 VRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN-SRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSW 2288 (2439)
T ss_pred eeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCc-chhhhhhhcccCCceeeeccCCceeecccC-Ccceecc
Confidence 34444454 4788999999999999999888777776665 899999999999999999999999999987 6777788
Q ss_pred cccccceeEeeecCCCCCEEEEee---CCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEc
Q 019847 97 EGHHRRVATSSWNHWNGHILTSGS---KDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWER 173 (335)
Q Consensus 97 ~~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 173 (335)
+.|........|.. ..+++++ .++.+.+||..........-..|.+.++++++.|..+.|++|+.+|.|++||+
T Consensus 2289 qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~ 2365 (2439)
T KOG1064|consen 2289 QCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDI 2365 (2439)
T ss_pred ccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeeh
Confidence 88999999999953 6677764 56899999975443322233689999999999999999999999999999998
Q ss_pred cCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecC
Q 019847 174 SKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAK 233 (335)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~ 233 (335)
+.. +.++.++. ++ .+..+++++ ..|.++||++.....++.++..
T Consensus 2366 rqr---ql~h~~~~---------~~--~~~~f~~~s--s~g~ikIw~~s~~~ll~~~p~e 2409 (2439)
T KOG1064|consen 2366 RQR---QLRHTFQA---------LD--TREYFVTGS--SEGNIKIWRLSEFGLLHTFPSE 2409 (2439)
T ss_pred HHH---HHHHHhhh---------hh--hhheeeccC--cccceEEEEccccchhhcCchh
Confidence 863 33444432 33 234666765 8999999999988877777653
No 262
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.55 E-value=3.2e-12 Score=99.00 Aligned_cols=243 Identities=12% Similarity=0.252 Sum_probs=161.0
Q ss_pred ccccceeeeecC--CceEEEecCCeEEEEEecCCc---eeeEEeecCC------------CCCceEEEEcCCCC--EEEE
Q 019847 15 EDYYSKVIDWGR--NNVLAVALGPVLFLWKWENGK---VKKLLQVPGE------------DDYPTSVSWSHDAK--TLAV 75 (335)
Q Consensus 15 ~~~~~~~~~~~~--~~~~~~~~~~~i~vw~~~~~~---~~~~~~~~~~------------~~~v~~~~~~~~~~--~l~~ 75 (335)
..-.+.++.|.. +.++++..+|.|.++.-+... ..-...++.| ...|..+.|.++++ .++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 334466677764 566677789999999754322 1112222333 25688999998654 5666
Q ss_pred EECCCcEEEEeCCCceeE-----------------------------------eee-cccccceeEeeecCCCCCEEEEe
Q 019847 76 GYMDSKLQLWDAETSKLV-----------------------------------RNL-EGHHRRVATSSWNHWNGHILTSG 119 (335)
Q Consensus 76 ~~~dg~i~iw~~~~~~~~-----------------------------------~~~-~~~~~~v~~~~~~~~~~~~l~~~ 119 (335)
.+.|.+|++|.+...... +.+ ..|.-.|.++.++. +...++++
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns-D~Et~lSA 182 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS-DKETFLSA 182 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecC-ccceEeec
Confidence 778999999987532110 011 24777899999987 77777765
Q ss_pred eCCCcEEEEecccCCeeeEEe--ecC-----CCCEEEEEeec-CCCEEEEEeCCCeEEEEEccCCCcc----cce-----
Q 019847 120 SKDKSIINHDVRVSNNVTSCI--KAH-----SGEVCGLKWSN-EGNLLASGGDDNVVRIWERSKMSSS----KSL----- 182 (335)
Q Consensus 120 ~~dg~i~~~d~~~~~~~~~~~--~~~-----~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~----~~~----- 182 (335)
.|=.|.+|+++-..+...+. +++ ..-|++..|+| ..+.++-.+..|+|++-|+|....- +..
T Consensus 183 -DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEeped 261 (433)
T KOG1354|consen 183 -DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPED 261 (433)
T ss_pred -cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccC
Confidence 47789999987554433222 222 23478889999 5678888999999999999842110 000
Q ss_pred ----eeccCCCCCeeEEEecCCCCcEEEEecCCCC-CeEEEEEC-CCCceEEEeecCC----------------cEeEEE
Q 019847 183 ----HRFTDHCGGVKALAWSPHQVNVLATGGGRED-GCIKIWNV-QKGTCIHGIDAKA----------------QICGLE 240 (335)
Q Consensus 183 ----~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d-~~i~i~d~-~~~~~~~~~~~~~----------------~~~~~~ 240 (335)
.-+..--..|..+.|+++|.++++ .| -+|++||+ ...+++.+++.+. .-..++
T Consensus 262 p~~rsffseiIsSISDvKFs~sGryils-----RDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~ 336 (433)
T KOG1354|consen 262 PSSRSFFSEIISSISDVKFSHSGRYILS-----RDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECS 336 (433)
T ss_pred CcchhhHHHHhhhhhceEEccCCcEEEE-----eccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEE
Confidence 111112345888999999987776 34 89999999 5566666665432 234578
Q ss_pred eCCCCceeeeeeeeeeecCCCeEEEEECCC
Q 019847 241 WNRHHKEILSGHGFSASGDGNKLCLWKYPN 270 (335)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~ 270 (335)
|+.++..+++| +-.+.+++|+...
T Consensus 337 ~sg~~~~v~TG------sy~n~frvf~~~~ 360 (433)
T KOG1354|consen 337 WSGNDSYVMTG------SYNNVFRVFNLAR 360 (433)
T ss_pred EcCCcceEecc------cccceEEEecCCC
Confidence 99999999998 5588888888544
No 263
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.54 E-value=2.8e-13 Score=118.60 Aligned_cols=189 Identities=19% Similarity=0.304 Sum_probs=148.3
Q ss_pred eeecCCceEEEecCCeEEEEEecCCceeeEEeecCCCCC-----ceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeee
Q 019847 22 IDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDY-----PTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNL 96 (335)
Q Consensus 22 ~~~~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 96 (335)
+.|.+..++.++.++.+.+||...+...... . +... ..-+-++++.-++++|+.-+.|.+|+....+....+
T Consensus 95 l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i--~-~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l 171 (967)
T KOG0974|consen 95 LFEENKKIALVTSRNSLLIRDSKNSSVLSKI--Q-SDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRL 171 (967)
T ss_pred hhhhcceEEEEEcCceEEEEecccCceehhc--C-CCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCccee
Confidence 3445567888889999999998877643222 1 2221 122334667779999999999999998744444468
Q ss_pred cccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCC
Q 019847 97 EGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKM 176 (335)
Q Consensus 97 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 176 (335)
.+|.+.|.++.|+. ++.++++.++|.++++|++++.+.......+|...+..+.|.|+ .+++++.|.+.++|+.+.
T Consensus 172 ~GHeG~iF~i~~s~-dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~- 247 (967)
T KOG0974|consen 172 KGHEGSIFSIVTSL-DGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNG- 247 (967)
T ss_pred cccCCceEEEEEcc-CCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEeccc-
Confidence 89999999999999 99999999999999999999888766677789999999999998 899999999999997553
Q ss_pred CcccceeeccCCCC-CeeEEEecCCCCcEEEEecCCCCCeEEEEECCC
Q 019847 177 SSSKSLHRFTDHCG-GVKALAWSPHQVNVLATGGGREDGCIKIWNVQK 223 (335)
Q Consensus 177 ~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~ 223 (335)
..+..+..|.. .+..++..++.. +..+++ .|+.+++||+..
T Consensus 248 ---~~l~~y~~h~g~~iw~~~~~~~~~-~~vT~g--~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 248 ---TQLEVYDEHSGKGIWKIAVPIGVI-IKVTGG--NDSTLKLWDLNG 289 (967)
T ss_pred ---ceehhhhhhhhcceeEEEEcCCce-EEEeec--cCcchhhhhhhc
Confidence 33456666754 588888888764 566665 899999999753
No 264
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.53 E-value=2.2e-12 Score=97.73 Aligned_cols=189 Identities=18% Similarity=0.226 Sum_probs=135.9
Q ss_pred EEEecCCeEEEEEecCCceeeEE-eecCCC---CCceEEEEcCCCCEEEEEECCCcEEEEeCCCcee--Eeeecccccce
Q 019847 30 LAVALGPVLFLWKWENGKVKKLL-QVPGED---DYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKL--VRNLEGHHRRV 103 (335)
Q Consensus 30 ~~~~~~~~i~vw~~~~~~~~~~~-~~~~~~---~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~--~~~~~~~~~~v 103 (335)
+-+-..|.|.++..+..+....+ .+..-. ....++.|++.+..++++-.+|.+.+-+.....+ ++.++.|.-+.
T Consensus 89 ~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~ 168 (339)
T KOG0280|consen 89 LDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEA 168 (339)
T ss_pred eeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceee
Confidence 33446778888876543321111 111111 1245788999999999999999999666555544 44889999999
Q ss_pred eEeeecCCCCCEEEEeeCCCcEEEEecccCCe-eeEEeecCCCCEEEEEeec-CCCEEEEEeCCCeEEEEEccCCCcccc
Q 019847 104 ATSSWNHWNGHILTSGSKDKSIINHDVRVSNN-VTSCIKAHSGEVCGLKWSN-EGNLLASGGDDNVVRIWERSKMSSSKS 181 (335)
Q Consensus 104 ~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~-~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~ 181 (335)
+...|+..+++++++|+.|+.+..||++..+. +.+..+-|...|.+|.-+| .+.++++|+.|-.|++||.|+.. ++
T Consensus 169 Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~--kP 246 (339)
T KOG0280|consen 169 WTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMG--KP 246 (339)
T ss_pred eeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhccc--Cc
Confidence 99999998899999999999999999994443 3333556889999999887 68899999999999999999653 33
Q ss_pred eeeccCCCCCeeEEEecCCCCc-EEEEecCCCCCeEEEEECCCC
Q 019847 182 LHRFTDHCGGVKALAWSPHQVN-VLATGGGREDGCIKIWNVQKG 224 (335)
Q Consensus 182 ~~~~~~~~~~v~~~~~~~~~~~-~~~~~~g~~d~~i~i~d~~~~ 224 (335)
+..- .-.+.|..++++|.-.. +++++ .-+-.++-+.+.+
T Consensus 247 l~~~-~v~GGVWRi~~~p~~~~~lL~~C---Mh~G~ki~~~~~~ 286 (339)
T KOG0280|consen 247 LFKA-KVGGGVWRIKHHPEIFHRLLAAC---MHNGAKILDSSDK 286 (339)
T ss_pred cccC-ccccceEEEEecchhhhHHHHHH---HhcCceEEEeccc
Confidence 3322 23478999999997543 33433 4555677776654
No 265
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.51 E-value=1.9e-11 Score=101.22 Aligned_cols=191 Identities=16% Similarity=0.231 Sum_probs=145.9
Q ss_pred cCCCCEEEEEECCCcEEEEeCCCceeEeeeccc---ccceeEeeec------C-------------CCCCEEEEeeCCCc
Q 019847 67 SHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGH---HRRVATSSWN------H-------------WNGHILTSGSKDKS 124 (335)
Q Consensus 67 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~---~~~v~~~~~~------~-------------~~~~~l~~~~~dg~ 124 (335)
.|...|+|....||.+++|+..+++....+... .+..++..|. | .+...++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 345678999999999999999999887776532 2333344442 1 13457888899999
Q ss_pred EEEEecccCCeeeEEe-ecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCc
Q 019847 125 IINHDVRVSNNVTSCI-KAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVN 203 (335)
Q Consensus 125 i~~~d~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 203 (335)
|.+|+...++...... ..|.+.|.++.++.+-..|.+++.|+.+..|+... ...+..+...+..+.+++.+||+..
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~---~~~~~~~~~~~~~~~sl~is~D~~~ 158 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKE---KVIIRIWKEQKPLVSSLCISPDGKI 158 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccc---ceeeeeeccCCCccceEEEcCCCCE
Confidence 9999998555433322 46999999999999999999999999999999665 4557777777888999999999864
Q ss_pred EEEEecCCCCCeEEEEECCCCceEEEeecC-CcEeEEEeCCC-----CceeeeeeeeeeecCCCeEEEEECCC
Q 019847 204 VLATGGGREDGCIKIWNVQKGTCIHGIDAK-AQICGLEWNRH-----HKEILSGHGFSASGDGNKLCLWKYPN 270 (335)
Q Consensus 204 ~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~i~i~d~~~ 270 (335)
++ ++ .+.|++||+++++.+..+.++ +++.++.|... |.+++++. ..+..+.+|-...
T Consensus 159 l~-~a----s~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa-----~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 159 LL-TA----SRQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSA-----AAERGITVWVVEK 221 (541)
T ss_pred EE-ec----cceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeecc-----ccccceeEEEEEc
Confidence 44 43 589999999999999999976 58889988877 77777653 3355666675543
No 266
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.51 E-value=1.4e-10 Score=97.96 Aligned_cols=270 Identities=10% Similarity=0.010 Sum_probs=163.9
Q ss_pred ecCCceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccce
Q 019847 24 WGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRV 103 (335)
Q Consensus 24 ~~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v 103 (335)
..++.+++++.++.+..+|..+|+..-...+... ...... .++..+++++.+|.+..+|.++|+.+..........
T Consensus 63 v~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~--~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ 138 (377)
T TIGR03300 63 VAGGKVYAADADGTVVALDAETGKRLWRVDLDER--LSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVL 138 (377)
T ss_pred EECCEEEEECCCCeEEEEEccCCcEeeeecCCCC--cccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCceee
Confidence 3456788888889999999999987655554332 111222 256788888899999999999999887765332211
Q ss_pred eEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCE-----EEEEeecCCCEEEEEeCCCeEEEEEccCCCc
Q 019847 104 ATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEV-----CGLKWSNEGNLLASGGDDNVVRIWERSKMSS 178 (335)
Q Consensus 104 ~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i-----~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 178 (335)
..... .+..++.++.+|.+..+|.++++..-+.. ...... .+... .+..++.+..+|.+..+|.+++..
T Consensus 139 ~~p~v---~~~~v~v~~~~g~l~a~d~~tG~~~W~~~-~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~ 212 (377)
T TIGR03300 139 SPPLV---ANGLVVVRTNDGRLTALDAATGERLWTYS-RVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQP 212 (377)
T ss_pred cCCEE---ECCEEEEECCCCeEEEEEcCCCceeeEEc-cCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCE
Confidence 11122 34567778889999999998776543321 111111 01111 124677888889999999876543
Q ss_pred ccceeeccCCC-CC------e-eEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeee
Q 019847 179 SKSLHRFTDHC-GG------V-KALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILS 250 (335)
Q Consensus 179 ~~~~~~~~~~~-~~------v-~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (335)
.-......... .. + ....+ .+..+++.+ .+|.++.+|.++++.+...+... ..... ..+..++.
T Consensus 213 ~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~---~~g~l~a~d~~tG~~~W~~~~~~-~~~p~--~~~~~vyv 284 (377)
T TIGR03300 213 LWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVS---YQGRVAALDLRSGRVLWKRDASS-YQGPA--VDDNRLYV 284 (377)
T ss_pred eeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEE---cCCEEEEEECCCCcEEEeeccCC-ccCce--EeCCEEEE
Confidence 21111000000 00 0 11111 133455544 68999999999998876665322 11111 12334433
Q ss_pred eeeeeeecCCCeEEEEECCCCceeecccCCCC-ceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCc
Q 019847 251 GHGFSASGDGNKLCLWKYPNMTKVGELQSSNS-RILDLSQSPDGLTVATAGADETIRFWEAFGPSGDEDS 319 (335)
Q Consensus 251 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~ 319 (335)
+ +.+|.+..+|..+++.+........ ....... .+..|++++.||.++++|..+++.....
T Consensus 285 ~------~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~ 346 (377)
T TIGR03300 285 T------DADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARL 346 (377)
T ss_pred E------CCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEE
Confidence 3 6799999999999988765532211 1222222 3568889999999999998877655433
No 267
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.51 E-value=1.3e-12 Score=100.00 Aligned_cols=243 Identities=17% Similarity=0.287 Sum_probs=171.7
Q ss_pred CCCceEEEEcCCCCEEEEEECCCcEEEEeCCCce-----eEeeecccc------------cceeEeeecC-CCCCEEEEe
Q 019847 58 DDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSK-----LVRNLEGHH------------RRVATSSWNH-WNGHILTSG 119 (335)
Q Consensus 58 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~~~------------~~v~~~~~~~-~~~~~l~~~ 119 (335)
.+.|+++.|...|.||++|...|.|.+|.-+... ...+++.|. ..|..+.|.. .....++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 5679999999999999999988999999765432 222344443 4678888865 234567788
Q ss_pred eCCCcEEEEecccCC-------------------e----------------------eeEE-eecCCCCEEEEEeecCCC
Q 019847 120 SKDKSIINHDVRVSN-------------------N----------------------VTSC-IKAHSGEVCGLKWSNEGN 157 (335)
Q Consensus 120 ~~dg~i~~~d~~~~~-------------------~----------------------~~~~-~~~~~~~i~~~~~~~~~~ 157 (335)
+.|.+|++|.+.... . +.+. ...|.-.|.++.++.|..
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 899999999885431 0 0011 134667788999999888
Q ss_pred EEEEEeCCCeEEEEEccCCCcccceeeccCCC-----CCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceE-----
Q 019847 158 LLASGGDDNVVRIWERSKMSSSKSLHRFTDHC-----GGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCI----- 227 (335)
Q Consensus 158 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~----- 227 (335)
.++++. |-.|.+|++......-.+-.+++|. .-|++..|+|....++.-++ ..|.|++-|++....-
T Consensus 186 t~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSs--SkG~Ikl~DlRq~alcdn~~k 262 (460)
T COG5170 186 TLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSS--SKGEIKLNDLRQSALCDNSKK 262 (460)
T ss_pred eeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEec--CCCcEEehhhhhhhhccCchh
Confidence 887765 7889999987665544455555553 34788999998877777666 7999999999853221
Q ss_pred -EE--ee---------cCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCC-CceeecccCCC------------C
Q 019847 228 -HG--ID---------AKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPN-MTKVGELQSSN------------S 282 (335)
Q Consensus 228 -~~--~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~-~~~~~~~~~~~------------~ 282 (335)
.. +. .-..|..+.|+++|+++++- +-.++++||++. ..++.++.-|. .
T Consensus 263 lfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsR-------dyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnD 335 (460)
T COG5170 263 LFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSR-------DYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYEND 335 (460)
T ss_pred hhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEe-------ccceEEEEecccccCCceeechHHHHHHHHHhhhhcc
Confidence 11 11 12358889999999999875 357899999976 45566665442 2
Q ss_pred ce---eEeEEcCCCCEEEEEeCCCcEEEEec
Q 019847 283 RI---LDLSQSPDGLTVATAGADETIRFWEA 310 (335)
Q Consensus 283 ~i---~~~~~~~~~~~l~~~~~dg~v~iw~~ 310 (335)
.| ..+.||.|...+++|+.....-+|-.
T Consensus 336 aifdkFeisfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 336 AIFDKFEISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred ceeeeEEEEecCCcccccccccccceeeecc
Confidence 23 34678889889999988777777763
No 268
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.50 E-value=1.7e-10 Score=107.98 Aligned_cols=242 Identities=7% Similarity=0.080 Sum_probs=158.0
Q ss_pred eEEEEcCC-CCEEEEEECCCcEEEEeCCCceeEeeecc-c-------------ccceeEeeecCCCCCEEEEe-eCCCcE
Q 019847 62 TSVSWSHD-AKTLAVGYMDSKLQLWDAETSKLVRNLEG-H-------------HRRVATSSWNHWNGHILTSG-SKDKSI 125 (335)
Q Consensus 62 ~~~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~-------------~~~v~~~~~~~~~~~~l~~~-~~dg~i 125 (335)
..+++++. +..+++-..++.|+++|.. ++.+..+.. . -.....+++.+ +++.|+++ ..++.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~-~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA-KKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeC-CCCEEEEEeCCCceE
Confidence 46888875 5566666678899999976 444433322 1 12357888988 66655554 456789
Q ss_pred EEEecccCCeeeEEeecC-----------------CCCEEEEEeec-CCCEEEEEeCCCeEEEEEccCCCcccc-----e
Q 019847 126 INHDVRVSNNVTSCIKAH-----------------SGEVCGLKWSN-EGNLLASGGDDNVVRIWERSKMSSSKS-----L 182 (335)
Q Consensus 126 ~~~d~~~~~~~~~~~~~~-----------------~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~-----~ 182 (335)
+.+|..++. ...+.+. -.....++++| ++.++++.+.++.|++||......... .
T Consensus 649 r~id~~~~~--V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~ 726 (1057)
T PLN02919 649 REIDFVNET--VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYE 726 (1057)
T ss_pred EEEecCCCE--EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCcc
Confidence 999986543 2222110 11236799999 566677777789999999765321000 0
Q ss_pred eeccC------CCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEee--------------c--------CC
Q 019847 183 HRFTD------HCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGID--------------A--------KA 234 (335)
Q Consensus 183 ~~~~~------~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~--------------~--------~~ 234 (335)
....+ .-.....++++|++..++++.+ .++.|++||+.++....... . -.
T Consensus 727 ~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs--~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~ 804 (1057)
T PLN02919 727 RNLNGSSGTSTSFAQPSGISLSPDLKELYIADS--ESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQ 804 (1057)
T ss_pred ccCCCCccccccccCccEEEEeCCCCEEEEEEC--CCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhcc
Confidence 00000 1123567999999987888776 78999999998765321110 0 01
Q ss_pred cEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecc-------------cCCCCceeEeEEcCCCCEEEEEeC
Q 019847 235 QICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGEL-------------QSSNSRILDLSQSPDGLTVATAGA 301 (335)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~-------------~~~~~~i~~~~~~~~~~~l~~~~~ 301 (335)
....++++++|..+++- ..++.|++||..++...... .+.-.....++++++|+++++-+.
T Consensus 805 ~P~Gvavd~dG~LYVAD------s~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~ 878 (1057)
T PLN02919 805 HPLGVLCAKDGQIYVAD------SYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTN 878 (1057)
T ss_pred CCceeeEeCCCcEEEEE------CCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECC
Confidence 24578889998755544 66899999999876654221 112234678999999998888889
Q ss_pred CCcEEEEecCCCCC
Q 019847 302 DETIRFWEAFGPSG 315 (335)
Q Consensus 302 dg~v~iw~~~~~~~ 315 (335)
++.|++||+.....
T Consensus 879 Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 879 NSLIRYLDLNKGEA 892 (1057)
T ss_pred CCEEEEEECCCCcc
Confidence 99999999987654
No 269
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.47 E-value=2.7e-10 Score=104.74 Aligned_cols=288 Identities=17% Similarity=0.207 Sum_probs=179.4
Q ss_pred ccceeeeecC--CceEEEecCCeEEEE----EecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCC--
Q 019847 17 YYSKVIDWGR--NNVLAVALGPVLFLW----KWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAE-- 88 (335)
Q Consensus 17 ~~~~~~~~~~--~~~~~~~~~~~i~vw----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~-- 88 (335)
..+.++.+-. +.++++..+|.|.+. +..+.+....-.+ ...|.+++||||+..|+..+.++++.+-.-.
T Consensus 76 ~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~v---d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd 152 (928)
T PF04762_consen 76 DKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSV---DSGILAASWSPDEELLALVTGEGNLLLMTRDFD 152 (928)
T ss_pred CcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEE---cCcEEEEEECCCcCEEEEEeCCCEEEEEeccce
Confidence 3455566554 467788899999999 6666665444443 5679999999999999999999988876421
Q ss_pred -------------C--------ceeEeeecc------------------------cccceeEeeecCCCCCEEEEeeC--
Q 019847 89 -------------T--------SKLVRNLEG------------------------HHRRVATSSWNHWNGHILTSGSK-- 121 (335)
Q Consensus 89 -------------~--------~~~~~~~~~------------------------~~~~v~~~~~~~~~~~~l~~~~~-- 121 (335)
. |+....|++ ....-..++|.. ||.++++.+.
T Consensus 153 ~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRG-DG~yFAVss~~~ 231 (928)
T PF04762_consen 153 PISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRG-DGEYFAVSSVEP 231 (928)
T ss_pred EEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECC-CCcEEEEEEEEc
Confidence 0 111111111 223456788988 9999998874
Q ss_pred -C---CcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeC---CCeEEEEEccCCCcccceeeccCCCCCeeE
Q 019847 122 -D---KSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGD---DNVVRIWERSKMSSSKSLHRFTDHCGGVKA 194 (335)
Q Consensus 122 -d---g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~ 194 (335)
. ..+++|+-+ + .+...-..-.+--.+++|.|.|+++|+.-. ...|.+|.-+....+.-...+......|..
T Consensus 232 ~~~~~R~iRVy~Re-G-~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~ 309 (928)
T PF04762_consen 232 ETGSRRVIRVYSRE-G-ELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIE 309 (928)
T ss_pred CCCceeEEEEECCC-c-eEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeE
Confidence 2 478999865 2 233333333344467899999999998765 346777775543322222222345667999
Q ss_pred EEecCCCCcEEEEecCCCCCeEEEEECCCCceE--EEee--cCCcEeEEEeCCCCcee-eeee----------eeeee-c
Q 019847 195 LAWSPHQVNVLATGGGREDGCIKIWNVQKGTCI--HGID--AKAQICGLEWNRHHKEI-LSGH----------GFSAS-G 258 (335)
Q Consensus 195 ~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~-~~~~----------~~~~~-~ 258 (335)
+.|++++..|++.. ...|.+|-..+..-. +.+. ....+..+.|+|....- .... .+.+. +
T Consensus 310 l~Wn~ds~iLAv~~----~~~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s 385 (928)
T PF04762_consen 310 LAWNSDSEILAVWL----EDRVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRS 385 (928)
T ss_pred EEECCCCCEEEEEe----cCCceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEec
Confidence 99999997554443 444999998876432 2222 23445568899865442 2210 01010 0
Q ss_pred ------CCCeEEEEECCCCce--e--eccc--------CCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCC
Q 019847 259 ------DGNKLCLWKYPNMTK--V--GELQ--------SSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPS 314 (335)
Q Consensus 259 ------~~~~i~i~d~~~~~~--~--~~~~--------~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~ 314 (335)
+.+.+.+.|-.+-.. . ..++ ....+|.+++|++++..+++-..||.+.+|......
T Consensus 386 ~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~ 459 (928)
T PF04762_consen 386 PGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKN 459 (928)
T ss_pred CCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCC
Confidence 223444444322110 0 0011 124579999999999889999999999999966543
No 270
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.47 E-value=1.2e-10 Score=98.51 Aligned_cols=258 Identities=13% Similarity=0.052 Sum_probs=157.8
Q ss_pred ecCCceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccce
Q 019847 24 WGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRV 103 (335)
Q Consensus 24 ~~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v 103 (335)
..++.+++++.++.++.+|.++|+..-...+.+ .+.+.-.. .+..++.++.+|.+..+|.++|+.+.++.......
T Consensus 103 v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~---~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~ 178 (377)
T TIGR03300 103 ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSS---EVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPAL 178 (377)
T ss_pred EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCc---eeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCce
Confidence 345677888889999999999998765444322 12111111 35577778889999999999999887765432211
Q ss_pred -----eEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCC---C---EEEEEeec--CCCEEEEEeCCCeEEE
Q 019847 104 -----ATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSG---E---VCGLKWSN--EGNLLASGGDDNVVRI 170 (335)
Q Consensus 104 -----~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~---~---i~~~~~~~--~~~~l~~~~~dg~i~i 170 (335)
.+... .+..++.+..+|.+..+|.++++........... . ...+.-+| .+..+++++.+|.++.
T Consensus 179 ~~~~~~sp~~---~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a 255 (377)
T TIGR03300 179 TLRGSASPVI---ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAA 255 (377)
T ss_pred eecCCCCCEE---ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEE
Confidence 11112 2346778888999999999877654322111100 0 00111112 3457788888999999
Q ss_pred EEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec-CCc-EeEEEeCCCCcee
Q 019847 171 WERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA-KAQ-ICGLEWNRHHKEI 248 (335)
Q Consensus 171 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~ 248 (335)
+|.++++. +.... . ........ .+..+++.. .+|.+..+|..+++.+...+. ... ...... .+..+
T Consensus 256 ~d~~tG~~---~W~~~-~-~~~~~p~~--~~~~vyv~~---~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l 323 (377)
T TIGR03300 256 LDLRSGRV---LWKRD-A-SSYQGPAV--DDNRLYVTD---ADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYL 323 (377)
T ss_pred EECCCCcE---EEeec-c-CCccCceE--eCCEEEEEC---CCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEE
Confidence 99876532 22222 1 11112222 344555543 699999999999988766532 211 111111 23344
Q ss_pred eeeeeeeeecCCCeEEEEECCCCceeecccCCCCcee-EeEEcCCCCEEEEEeCCCcEEEE
Q 019847 249 LSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRIL-DLSQSPDGLTVATAGADETIRFW 308 (335)
Q Consensus 249 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~dg~v~iw 308 (335)
+++ +.+|.++++|..+++.+.+++.+...+. +..+. ++ .|+.++.||.|..+
T Consensus 324 ~~~------~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~~-~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 324 VVG------DFEGYLHWLSREDGSFVARLKTDGSGIASPPVVV-GD-GLLVQTRDGDLYAF 376 (377)
T ss_pred EEE------eCCCEEEEEECCCCCEEEEEEcCCCccccCCEEE-CC-EEEEEeCCceEEEe
Confidence 443 7799999999999999988876664432 22332 33 58889999998876
No 271
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.45 E-value=1.4e-12 Score=120.37 Aligned_cols=221 Identities=13% Similarity=0.191 Sum_probs=168.0
Q ss_pred EEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEe
Q 019847 73 LAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKW 152 (335)
Q Consensus 73 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~ 152 (335)
+.....++...-|..+.+.. .++.+-..|.++.-+| ...+.++|+.||.+++|....+..+..........|+.+.|
T Consensus 2183 ~~~~n~~~~~~tq~~~~~~~--~~k~~v~~v~r~~sHp-~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f 2259 (2439)
T KOG1064|consen 2183 FTPSNLPWLGSTQTSRGASV--MIKHPVENVRRMTSHP-SDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRF 2259 (2439)
T ss_pred CCcccCCccccceeccccee--EeecccCceeeecCCC-CCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhh
Confidence 33333344444454332222 2233456788888888 78889999999999999998777766555555688999999
Q ss_pred ecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCC--ceEEEe
Q 019847 153 SNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKG--TCIHGI 230 (335)
Q Consensus 153 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~--~~~~~~ 230 (335)
+.+|+.+..+..||.+.+|.+. .++....+.|......+.|-. ..++..+..+.++.+.+||.-.. ..+...
T Consensus 2260 ~~qGnk~~i~d~dg~l~l~q~~----pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~ 2333 (2439)
T KOG1064|consen 2260 NHQGNKFGIVDGDGDLSLWQAS----PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHT 2333 (2439)
T ss_pred cccCCceeeeccCCceeecccC----CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeee
Confidence 9999999999999999999976 456777788888888888876 23555554457789999996432 222224
Q ss_pred ecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEec
Q 019847 231 DAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEA 310 (335)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~ 310 (335)
-+.+..+++++-|....+++| +.+|.|++||++..+++++++. +. ...++++|+..|.++||++
T Consensus 2334 ~H~~gaT~l~~~P~~qllisg------gr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~ 2397 (2439)
T KOG1064|consen 2334 CHDGGATVLAYAPKHQLLISG------GRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRL 2397 (2439)
T ss_pred ecCCCceEEEEcCcceEEEec------CCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEc
Confidence 456789999999999999988 8899999999999998887765 34 4568999999999999999
Q ss_pred CCCCCCCC
Q 019847 311 FGPSGDED 318 (335)
Q Consensus 311 ~~~~~~~~ 318 (335)
........
T Consensus 2398 s~~~ll~~ 2405 (2439)
T KOG1064|consen 2398 SEFGLLHT 2405 (2439)
T ss_pred cccchhhc
Confidence 98755443
No 272
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.45 E-value=2.4e-11 Score=103.88 Aligned_cols=294 Identities=12% Similarity=0.135 Sum_probs=199.0
Q ss_pred CCCcccccceeeeecCCceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCC------------CEEEEEEC
Q 019847 11 PYLMEDYYSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDA------------KTLAVGYM 78 (335)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------------~~l~~~~~ 78 (335)
|..++.-.-.+++|++..+++.++...|.+-|..+-+.++. ++-|+..|+.+.|.|.. -+||++..
T Consensus 10 pG~l~~sN~~A~Dw~~~GLiAygshslV~VVDs~s~q~iqs--ie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~ 87 (1062)
T KOG1912|consen 10 PGPLSRSNRNAADWSPSGLIAYGSHSLVSVVDSRSLQLIQS--IELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADI 87 (1062)
T ss_pred CCCCCcccccccccCccceEEEecCceEEEEehhhhhhhhc--cccCccceeEEEeccCCCchhccCccccceeEEeccc
Confidence 44444445788999999999999999999999888776554 45688999999998731 25677788
Q ss_pred CCcEEEEeCCCceeEeeecccccceeEeeecCC--CC-CEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeec-
Q 019847 79 DSKLQLWDAETSKLVRNLEGHHRRVATSSWNHW--NG-HILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSN- 154 (335)
Q Consensus 79 dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~--~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~- 154 (335)
.|.|.+||...+..+..+..+..++..++|-+. +. +.|++-....++.+|+..+++...+.-. ......|+.+.|
T Consensus 88 ~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~y-s~~iLs~f~~DPf 166 (1062)
T KOG1912|consen 88 SGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDY-SHEILSCFRVDPF 166 (1062)
T ss_pred cCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeecccc-CCcceeeeeeCCC
Confidence 899999999999999999999999999999663 22 5777778888999999998887655332 334567799999
Q ss_pred CCCEEEEEeCCCeEEEEEccCCC----cccceeeccCCCC----------------C---------eeEEEecCCCCcEE
Q 019847 155 EGNLLASGGDDNVVRIWERSKMS----SSKSLHRFTDHCG----------------G---------VKALAWSPHQVNVL 205 (335)
Q Consensus 155 ~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~----------------~---------v~~~~~~~~~~~~~ 205 (335)
|.+.+..-+..|.+.+-+.-... ..+.++.-..|.+ . ...++|+|.-++++
T Consensus 167 d~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~l 246 (1062)
T KOG1912|consen 167 DSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNIL 246 (1062)
T ss_pred CcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceE
Confidence 77888887888888777643211 1122222222211 0 12356788776666
Q ss_pred EEecCCCCCeEEEEECCCCceEEEeecCC-cEeEEEeCCCC--ceeeeeeeeeeecCCCeEEEEECCCCceeec------
Q 019847 206 ATGGGREDGCIKIWNVQKGTCIHGIDAKA-QICGLEWNRHH--KEILSGHGFSASGDGNKLCLWKYPNMTKVGE------ 276 (335)
Q Consensus 206 ~~~~g~~d~~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~------ 276 (335)
... ....+.++|++-..++.....+. .+.-+.+-|++ ..+++. -.+|.+.+|-.+......+
T Consensus 247 fi~---~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~Lfcl------H~nG~ltirvrk~~~~~f~~~~~~l 317 (1062)
T KOG1912|consen 247 FIT---FPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCL------HSNGRLTIRVRKEEPTEFKKPNASL 317 (1062)
T ss_pred EEE---eccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEE------ecCCeEEEEEeeccCccccccchhh
Confidence 655 58899999999888888776543 33444555554 455555 4599999997654211111
Q ss_pred ----------ccCC-CCceeEeEEcCC-CCEEEEEeCCCcEEEEecCCCCCC
Q 019847 277 ----------LQSS-NSRILDLSQSPD-GLTVATAGADETIRFWEAFGPSGD 316 (335)
Q Consensus 277 ----------~~~~-~~~i~~~~~~~~-~~~l~~~~~dg~v~iw~~~~~~~~ 316 (335)
+..- +..+......|. ...++.--.+|.+.+|.+.+++..
T Consensus 318 ~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~ 369 (1062)
T KOG1912|consen 318 SMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIH 369 (1062)
T ss_pred ccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcC
Confidence 1110 111222333343 334444456788899999875443
No 273
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.44 E-value=7.4e-10 Score=86.94 Aligned_cols=229 Identities=13% Similarity=0.168 Sum_probs=155.2
Q ss_pred CCcEEEEeCCCc--ee-EeeecccccceeEeeecCCCCCEEEEeeCC---CcEEEEecccC-Ceee--EEeecCCCCEEE
Q 019847 79 DSKLQLWDAETS--KL-VRNLEGHHRRVATSSWNHWNGHILTSGSKD---KSIINHDVRVS-NNVT--SCIKAHSGEVCG 149 (335)
Q Consensus 79 dg~i~iw~~~~~--~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~~~d~~~~-~~~~--~~~~~~~~~i~~ 149 (335)
+.-|++|++.+. +. ...+-.....++-++|+| +.+.|.++..+ |.|..|.++.. ..+. ........+-+.
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~-~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~y 93 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNP-DQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCY 93 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECC-CCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeE
Confidence 467999998743 21 112224667899999999 88888887654 77888888743 2211 111122334488
Q ss_pred EEeecCCCEEEEEeC-CCeEEEEEccCCCcccceeeccCCCCC----------eeEEEecCCCCcEEEEecCCCCCeEEE
Q 019847 150 LKWSNEGNLLASGGD-DNVVRIWERSKMSSSKSLHRFTDHCGG----------VKALAWSPHQVNVLATGGGREDGCIKI 218 (335)
Q Consensus 150 ~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~----------v~~~~~~~~~~~~~~~~~g~~d~~i~i 218 (335)
+++++++++++++.. -|.|.++-++.............|.++ +....+.|++++++++.- ---.|.+
T Consensus 94 vsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DL--G~Dri~~ 171 (346)
T COG2706 94 VSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDL--GTDRIFL 171 (346)
T ss_pred EEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeec--CCceEEE
Confidence 999999999988864 578999998764333333222334444 778899999988888765 3457999
Q ss_pred EECCCCceEE----EeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCC-ceeecccCC---------CCce
Q 019847 219 WNVQKGTCIH----GIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNM-TKVGELQSS---------NSRI 284 (335)
Q Consensus 219 ~d~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~-~~~~~~~~~---------~~~i 284 (335)
|++..|+... .++.+.....+.|+|++++..... .-+++|.+|..... ..+..++.+ ....
T Consensus 172 y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~-----EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~ 246 (346)
T COG2706 172 YDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVN-----ELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWA 246 (346)
T ss_pred EEcccCccccccccccCCCCCcceEEEcCCCcEEEEEe-----ccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCce
Confidence 9999776532 234456788999999999886653 55899999998773 233333221 2346
Q ss_pred eEeEEcCCCCEEEEEeC-CCcEEEEecCCCCC
Q 019847 285 LDLSQSPDGLTVATAGA-DETIRFWEAFGPSG 315 (335)
Q Consensus 285 ~~~~~~~~~~~l~~~~~-dg~v~iw~~~~~~~ 315 (335)
.+|.+++||++|.++.. ...|-+|.+.....
T Consensus 247 aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g 278 (346)
T COG2706 247 AAIHISPDGRFLYASNRGHDSIAVFSVDPDGG 278 (346)
T ss_pred eEEEECCCCCEEEEecCCCCeEEEEEEcCCCC
Confidence 78899999999988753 23677777766544
No 274
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=1.8e-10 Score=95.00 Aligned_cols=282 Identities=15% Similarity=0.178 Sum_probs=183.1
Q ss_pred cccceeeeecC-CceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEEC-----------CCcEE
Q 019847 16 DYYSKVIDWGR-NNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYM-----------DSKLQ 83 (335)
Q Consensus 16 ~~~~~~~~~~~-~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------dg~i~ 83 (335)
...-+.+.|+| +.+++.-....|.+|--++-...+.+ .|. .|.-+.|||+.+||++-+. ...++
T Consensus 210 nWTetyv~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~RF---~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~ 285 (698)
T KOG2314|consen 210 NWTETYVRWSPKGTYLVTFHKQGIALWGGESFDRIQRF---YHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLI 285 (698)
T ss_pred cceeeeEEecCCceEEEEEeccceeeecCccHHHHHhc---cCC-CceeeecCCccceEEEecCCccccCcccCCCceEE
Confidence 44556789999 45666666778999975544433322 343 4889999999999999652 25799
Q ss_pred EEeCCCceeEeeeccc--cccee-EeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEE
Q 019847 84 LWDAETSKLVRNLEGH--HRRVA-TSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLA 160 (335)
Q Consensus 84 iw~~~~~~~~~~~~~~--~~~v~-~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 160 (335)
|||+.+|.+.+.+... ...+. -..||. +++++|.-.. ..|.+|+...-. +.....-....|....|+|.+++||
T Consensus 286 IWDI~tG~lkrsF~~~~~~~~~WP~frWS~-DdKy~Arm~~-~sisIyEtpsf~-lld~Kslki~gIr~FswsP~~~llA 362 (698)
T KOG2314|consen 286 IWDIATGLLKRSFPVIKSPYLKWPIFRWSH-DDKYFARMTG-NSISIYETPSFM-LLDKKSLKISGIRDFSWSPTSNLLA 362 (698)
T ss_pred EEEccccchhcceeccCCCccccceEEecc-CCceeEEecc-ceEEEEecCcee-eecccccCCccccCcccCCCcceEE
Confidence 9999999998888752 22332 357888 8888887665 678899876422 2222222346788999999988887
Q ss_pred EEeCC-----CeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecC-------CCCCeEEEEECCCC-ceE
Q 019847 161 SGGDD-----NVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGG-------REDGCIKIWNVQKG-TCI 227 (335)
Q Consensus 161 ~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g-------~~d~~i~i~d~~~~-~~~ 227 (335)
.=... ..+.+-.+-+ .+.+++..-++-.=..+-|-.+|++|.+-.-. ..-..+.|+.++.. -++
T Consensus 363 Ywtpe~~~~parvtL~evPs---~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpv 439 (698)
T KOG2314|consen 363 YWTPETNNIPARVTLMEVPS---KREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPV 439 (698)
T ss_pred EEcccccCCcceEEEEecCc---cceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCc
Confidence 64422 2344444333 22233322232222346677777655443210 01224556666543 346
Q ss_pred EEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCC----CceeecccCCCCceeEeEEcCCCCEEEEEe---
Q 019847 228 HGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPN----MTKVGELQSSNSRILDLSQSPDGLTVATAG--- 300 (335)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--- 300 (335)
..++....+...+|-|.|..+++-.+ .....++.+|.+.+ .+++..+.. ...+.+.|+|.|++++.+.
T Consensus 440 e~velke~vi~FaWEP~gdkF~vi~g---~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l~s 514 (698)
T KOG2314|consen 440 EVVELKESVIAFAWEPHGDKFAVISG---NTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSPKGRFVVVAALVS 514 (698)
T ss_pred eeeecchheeeeeeccCCCeEEEEEc---cccccceeEEEeecCCCchhhhhhhcc--cccceEEEcCCCcEEEEEEecc
Confidence 66777889999999999998876432 23467889998873 233344433 3467899999999998774
Q ss_pred CCCcEEEEecCC
Q 019847 301 ADETIRFWEAFG 312 (335)
Q Consensus 301 ~dg~v~iw~~~~ 312 (335)
..|.+.++|...
T Consensus 515 ~~g~l~F~D~~~ 526 (698)
T KOG2314|consen 515 RRGDLEFYDTDY 526 (698)
T ss_pred cccceEEEecch
Confidence 578999999985
No 275
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=8.2e-11 Score=96.95 Aligned_cols=257 Identities=18% Similarity=0.216 Sum_probs=167.8
Q ss_pred eeeecCCceEE-EecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCC--CEEEE-----EECCCcEEEEeCCCcee
Q 019847 21 VIDWGRNNVLA-VALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDA--KTLAV-----GYMDSKLQLWDAETSKL 92 (335)
Q Consensus 21 ~~~~~~~~~~~-~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~-----~~~dg~i~iw~~~~~~~ 92 (335)
+..|+.+..++ --..+.+.+|+....+.. .. .-|...|+.+.++|.+ ..+|+ .+.-+.++||.......
T Consensus 130 ~~qfs~dEsl~arlv~nev~f~~~~~f~~~-~~--kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~ 206 (566)
T KOG2315|consen 130 VPQFSIDESLAARLVSNEVQFYDLGSFKTI-QH--KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQ 206 (566)
T ss_pred ccccccchhhhhhhhcceEEEEecCCccce-ee--eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccc
Confidence 46667654443 346789999998874422 12 2357779999999863 34444 24456899998763222
Q ss_pred Eeeec---ccccceeEeeecCCCCCEEEEeeC--C---------CcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCE
Q 019847 93 VRNLE---GHHRRVATSSWNHWNGHILTSGSK--D---------KSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNL 158 (335)
Q Consensus 93 ~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~--d---------g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 158 (335)
-..+. -....-..+.|++....+|+.++. | .++++.+++ +.. ...-....++|.++.|+|+++.
T Consensus 207 ~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~-g~s-~~V~L~k~GPVhdv~W~~s~~E 284 (566)
T KOG2315|consen 207 HQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ-GES-VSVPLLKEGPVHDVTWSPSGRE 284 (566)
T ss_pred cchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec-Cce-EEEecCCCCCceEEEECCCCCE
Confidence 11111 112233457787744444444432 2 367777776 333 2222345899999999999987
Q ss_pred EEEE--eCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcE
Q 019847 159 LASG--GDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQI 236 (335)
Q Consensus 159 l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~ 236 (335)
++++ -.--++.|||++. ..+..+ ..++-+++-|+|.|..++.+|-|...|.+.+||..+.+++..++... .
T Consensus 285 F~VvyGfMPAkvtifnlr~----~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~-t 357 (566)
T KOG2315|consen 285 FAVVYGFMPAKVTIFNLRG----KPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN-T 357 (566)
T ss_pred EEEEEecccceEEEEcCCC----CEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC-c
Confidence 7664 4556899999874 344444 46778899999999988888878888999999999988887776543 4
Q ss_pred eEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcC
Q 019847 237 CGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSP 291 (335)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~ 291 (335)
+-+.|+|+|++++++..-.--.-|+.++||++. |..+....-.. ....+.|-|
T Consensus 358 t~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt-G~~l~~~~f~s-EL~qv~W~P 410 (566)
T KOG2315|consen 358 TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT-GSLLHEKMFKS-ELLQVEWRP 410 (566)
T ss_pred eEEEEcCCCcEEEEEeccccEEecCCeEEEEec-CceeehhhhhH-hHhheeeee
Confidence 568999999999987431112348999999974 44443321111 455666665
No 276
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.41 E-value=8.1e-10 Score=89.64 Aligned_cols=147 Identities=13% Similarity=0.193 Sum_probs=118.1
Q ss_pred eeecCCceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCC-cEEEEeCCCceeEeeecccc
Q 019847 22 IDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDS-KLQLWDAETSKLVRNLEGHH 100 (335)
Q Consensus 22 ~~~~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~ 100 (335)
++..++.+++.-+.|...+.+...+-..+ + +|...|.-..+..+++-++.|..|| .+-|+|..+++. +.+...-
T Consensus 327 fa~~~Gd~ia~VSRGkaFi~~~~~~~~iq---v-~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~l 401 (668)
T COG4946 327 FAVVNGDYIALVSRGKAFIMRPWDGYSIQ---V-GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDL 401 (668)
T ss_pred hccCCCcEEEEEecCcEEEECCCCCeeEE---c-CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCc
Confidence 44456677777778888888876665433 2 4667788888988888999999999 899999987764 4455567
Q ss_pred cceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCC----eEEEEEccC
Q 019847 101 RRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDN----VVRIWERSK 175 (335)
Q Consensus 101 ~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----~i~iwd~~~ 175 (335)
+.|.++..++ +++.++.+.....+.+.|+.++.. ...-+...+-|+.+.|+|+++++|-+--+| .|+++|+..
T Consensus 402 g~I~av~vs~-dGK~~vvaNdr~el~vididngnv-~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~ 478 (668)
T COG4946 402 GNIEAVKVSP-DGKKVVVANDRFELWVIDIDNGNV-RLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG 478 (668)
T ss_pred cceEEEEEcC-CCcEEEEEcCceEEEEEEecCCCe-eEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC
Confidence 8999999999 999999999999999999997764 444455678899999999999999987665 588998765
No 277
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.38 E-value=2.3e-09 Score=90.81 Aligned_cols=216 Identities=11% Similarity=0.059 Sum_probs=132.6
Q ss_pred CeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCE-EEEEEC---CCcEEEEeCCCceeEeeecccccceeEeeecCC
Q 019847 36 PVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKT-LAVGYM---DSKLQLWDAETSKLVRNLEGHHRRVATSSWNHW 111 (335)
Q Consensus 36 ~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~ 111 (335)
..|.+-|.+.... +.+.. + . ......|+|||+. ++..+. +..|.++|+.+++...... ..+......|+|
T Consensus 169 ~~l~~~d~dg~~~-~~~~~-~-~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SP- 242 (419)
T PRK04043 169 SNIVLADYTLTYQ-KVIVK-G-G-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSK- 242 (419)
T ss_pred ceEEEECCCCCce-eEEcc-C-C-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECC-
Confidence 3566666655443 22222 2 2 6778999999985 655443 3569999998886554433 455566788999
Q ss_pred CCCEE-EEeeCC--CcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCC-C--eEEEEEccCCCcccceeec
Q 019847 112 NGHIL-TSGSKD--KSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDD-N--VVRIWERSKMSSSKSLHRF 185 (335)
Q Consensus 112 ~~~~l-~~~~~d--g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~ 185 (335)
+++.+ ++.+.+ ..|.++|+..+. ...+..+........|+|||+.|+..+.. + .|++.|+..+...+ +. .
T Consensus 243 DG~~la~~~~~~g~~~Iy~~dl~~g~--~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~r-lt-~ 318 (419)
T PRK04043 243 DGSKLLLTMAPKGQPDIYLYDTNTKT--LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQ-VV-F 318 (419)
T ss_pred CCCEEEEEEccCCCcEEEEEECCCCc--EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEe-Cc-c
Confidence 77655 444444 467777876544 23333344334456899999988777643 3 57777876543211 11 1
Q ss_pred cCCCCCeeEEEecCCCCcEEEEecCCCC--------CeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeee
Q 019847 186 TDHCGGVKALAWSPHQVNVLATGGGRED--------GCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSAS 257 (335)
Q Consensus 186 ~~~~~~v~~~~~~~~~~~~~~~~~g~~d--------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (335)
.+. ....|+|+|+.++.+.. .. ..|.+.|+.+++.. .+..........|+|+|+.++.... .
T Consensus 319 ~g~----~~~~~SPDG~~Ia~~~~--~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~~~~~~p~~SPDG~~I~f~~~---~ 388 (419)
T PRK04043 319 HGK----NNSSVSTYKNYIVYSSR--ETNNEFGKNTFNLYLISTNSDYIR-RLTANGVNQFPRFSSDGGSIMFIKY---L 388 (419)
T ss_pred CCC----cCceECCCCCEEEEEEc--CCCcccCCCCcEEEEEECCCCCeE-ECCCCCCcCCeEECCCCCEEEEEEc---c
Confidence 111 12489999998888764 22 47888999887653 3433333446889999998875421 1
Q ss_pred cCCCeEEEEECCCC
Q 019847 258 GDGNKLCLWKYPNM 271 (335)
Q Consensus 258 ~~~~~i~i~d~~~~ 271 (335)
+....+.+.++...
T Consensus 389 ~~~~~L~~~~l~g~ 402 (419)
T PRK04043 389 GNQSALGIIRLNYN 402 (419)
T ss_pred CCcEEEEEEecCCC
Confidence 22344666776543
No 278
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.38 E-value=3.5e-09 Score=99.41 Aligned_cols=240 Identities=10% Similarity=0.098 Sum_probs=151.9
Q ss_pred eeeecC--CceEEE-ecCCeEEEEEecCCceeeEEeecC------------CCCCceEEEEcCCCCEEEEEE-CCCcEEE
Q 019847 21 VIDWGR--NNVLAV-ALGPVLFLWKWENGKVKKLLQVPG------------EDDYPTSVSWSHDAKTLAVGY-MDSKLQL 84 (335)
Q Consensus 21 ~~~~~~--~~~~~~-~~~~~i~vw~~~~~~~~~~~~~~~------------~~~~v~~~~~~~~~~~l~~~~-~dg~i~i 84 (335)
.++++. +.++++ ..++.|+++|..... ...+...+ .-.....++++++++.|+++. .++.|++
T Consensus 572 gvavd~~~g~lyVaDs~n~rI~v~d~~G~~-i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~ 650 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNHNRIVVTDLDGNF-IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALRE 650 (1057)
T ss_pred eEEEECCCCeEEEEECCCCeEEEEeCCCCE-EEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEE
Confidence 355543 444444 467889999976443 22221111 113468899999888766654 4578999
Q ss_pred EeCCCceeEeeeccc-----------------ccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeec-----
Q 019847 85 WDAETSKLVRNLEGH-----------------HRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKA----- 142 (335)
Q Consensus 85 w~~~~~~~~~~~~~~-----------------~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~----- 142 (335)
+|+.++.. ..+.+. -.....++++|.++.++++...++.|++||..++... .+.+
T Consensus 651 id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~--~~~G~G~~~ 727 (1057)
T PLN02919 651 IDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR--VFSGDGYER 727 (1057)
T ss_pred EecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE--EEecCCccc
Confidence 99877643 332110 1234678999856677778788899999998754321 1111
Q ss_pred ----------CCCCEEEEEeecCCCEE-EEEeCCCeEEEEEccCCCcccc----------eeeccCC--------CCCee
Q 019847 143 ----------HSGEVCGLKWSNEGNLL-ASGGDDNVVRIWERSKMSSSKS----------LHRFTDH--------CGGVK 193 (335)
Q Consensus 143 ----------~~~~i~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~----------~~~~~~~--------~~~v~ 193 (335)
.-.....++++|+++.| ++-+.++.|++||++++..... +..+... -....
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 11235679999998844 4555678999999875431100 0001000 11245
Q ss_pred EEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecC--------------CcEeEEEeCCCCceeeeeeeeeeecC
Q 019847 194 ALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAK--------------AQICGLEWNRHHKEILSGHGFSASGD 259 (335)
Q Consensus 194 ~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (335)
.++++++|. ++++.. .++.|++||..++......... .....++++++|+.+++. +.
T Consensus 808 Gvavd~dG~-LYVADs--~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaD------t~ 878 (1057)
T PLN02919 808 GVLCAKDGQ-IYVADS--YNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVAD------TN 878 (1057)
T ss_pred eeeEeCCCc-EEEEEC--CCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEE------CC
Confidence 889999986 666655 7999999999887665433211 246789999999866554 67
Q ss_pred CCeEEEEECCCCce
Q 019847 260 GNKLCLWKYPNMTK 273 (335)
Q Consensus 260 ~~~i~i~d~~~~~~ 273 (335)
++.|++||+.+++.
T Consensus 879 Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 879 NSLIRYLDLNKGEA 892 (1057)
T ss_pred CCEEEEEECCCCcc
Confidence 89999999988764
No 279
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.36 E-value=7e-10 Score=83.45 Aligned_cols=261 Identities=13% Similarity=0.025 Sum_probs=166.1
Q ss_pred ecCCeEEEEEecCCc--eeeEEeecCCCCCceEEEEcC-----CCCEEEEEECCCcEEEEeCCCcee-Eeeeccccccee
Q 019847 33 ALGPVLFLWKWENGK--VKKLLQVPGEDDYPTSVSWSH-----DAKTLAVGYMDSKLQLWDAETSKL-VRNLEGHHRRVA 104 (335)
Q Consensus 33 ~~~~~i~vw~~~~~~--~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~~~v~ 104 (335)
.....+-+|++-+.. ..+.. ..+.|.| ...+||.|+..|...+|...+.+. .+....+...|+
T Consensus 49 ~~t~sv~i~~~y~N~~~iv~~y---------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~ 119 (344)
T KOG4532|consen 49 SKTISVPINSHYSNPKGIVEFY---------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVT 119 (344)
T ss_pred cceeeeEeccccCCchhhEEee---------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchh
Confidence 344567778776544 22221 2344544 445899999999999999986543 333444444443
Q ss_pred EeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCC--CEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccce
Q 019847 105 TSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSG--EVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSL 182 (335)
Q Consensus 105 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 182 (335)
-+.=.......+..++.|.++++.+++.+..... .|.. .+.+++++++++++++.+....|..|.+........-
T Consensus 120 ~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~---~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~ 196 (344)
T KOG4532|consen 120 LVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFA---VHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIEN 196 (344)
T ss_pred hhhhhcccccceeeccCCcceeEEEEecCcccce---eeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeee
Confidence 3322221344567788888888888874432122 2332 3789999999999999999999999998865433222
Q ss_pred eeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEe------ecCCcEeEEEeCCCCceeeeeeeeee
Q 019847 183 HRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGI------DAKAQICGLEWNRHHKEILSGHGFSA 256 (335)
Q Consensus 183 ~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (335)
.........-.+..|+.... .++++. .||++.|||++........ .+.+.+..+.|++.|..=+ +..
T Consensus 197 ~~~a~t~D~gF~~S~s~~~~-~FAv~~--Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDL----Lf~ 269 (344)
T KOG4532|consen 197 IYEAPTSDHGFYNSFSENDL-QFAVVF--QDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDL----LFI 269 (344)
T ss_pred eEecccCCCceeeeeccCcc-eEEEEe--cCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceE----EEE
Confidence 23334455567788988774 666665 9999999999876443222 1356789999998664322 112
Q ss_pred ecCCCeEEEEECCCCceeecccC-------CC-CceeEeEEcCCCCEEEEEeCCCcEEEEecCCC
Q 019847 257 SGDGNKLCLWKYPNMTKVGELQS-------SN-SRILDLSQSPDGLTVATAGADETIRFWEAFGP 313 (335)
Q Consensus 257 ~~~~~~i~i~d~~~~~~~~~~~~-------~~-~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~ 313 (335)
+..-+.+.+.|++++...+.+.. |. ..|..-.|+.++..+.+.+++ .+.=|++...
T Consensus 270 sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~sr 333 (344)
T KOG4532|consen 270 SEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILSR 333 (344)
T ss_pred ecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccch-hhheeecccc
Confidence 24468899999998776544322 22 237777788877777766654 3444555443
No 280
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.36 E-value=8.9e-10 Score=90.01 Aligned_cols=251 Identities=12% Similarity=0.117 Sum_probs=161.0
Q ss_pred cCCeEEEEEecCCceeeEEeecC-CCCCceEEEEcCCC--CEEEE-----EECCCcEEEEeCCCceeEeeecccccceeE
Q 019847 34 LGPVLFLWKWENGKVKKLLQVPG-EDDYPTSVSWSHDA--KTLAV-----GYMDSKLQLWDAETSKLVRNLEGHHRRVAT 105 (335)
Q Consensus 34 ~~~~i~vw~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--~~l~~-----~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~ 105 (335)
....++|+++ ++...+ ..+.. ....|...+|+|.+ ..||. .+..+.+++|.+..+..+..-.-....=..
T Consensus 150 v~~sl~i~e~-t~n~~~-~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~q 227 (561)
T COG5354 150 VGSSLYIHEI-TDNIEE-HPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQ 227 (561)
T ss_pred ccCeEEEEec-CCcccc-CchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccE
Confidence 4557888886 443321 11111 12557888999953 34444 356789999999877665544333344456
Q ss_pred eeecCCCCCEEEEee-----------CCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEe--CCCeEEEEE
Q 019847 106 SSWNHWNGHILTSGS-----------KDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGG--DDNVVRIWE 172 (335)
Q Consensus 106 ~~~~~~~~~~l~~~~-----------~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~iwd 172 (335)
+.|.+ .+++|+.-- ...++++++++.... .......++|...+|.|.++.+++.+ .+-.+.++|
T Consensus 228 LkW~~-~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i--~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~ 304 (561)
T COG5354 228 LKWQV-LGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSI--PVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFD 304 (561)
T ss_pred EEEec-CCceEEEEEEEeeecccceeccceEEEEeeccccc--ceeccccccceeeeecccCCceeEEecccccceeecc
Confidence 77888 666554321 124678888873332 22225689999999999888776655 678899999
Q ss_pred ccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeee
Q 019847 173 RSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGH 252 (335)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (335)
++.. ... ......=+.+.|+|.+.+++.+|-+...|.+.+||......+..--......-+.|+|+++++.+..
T Consensus 305 lr~N----l~~--~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ 378 (561)
T COG5354 305 LRGN----LRF--YFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDT 378 (561)
T ss_pred cccc----eEE--ecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCceEeeccCCceEEEecC
Confidence 8853 122 2234455678899999998888766677899999987554443222334456678999999987763
Q ss_pred eeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCC
Q 019847 253 GFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADE 303 (335)
Q Consensus 253 ~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 303 (335)
.-.--..|+.+.+||+...... ..+.+.|.|.+++..+.+.+.
T Consensus 379 ts~k~~~Dn~i~l~~v~g~~~f--------el~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 379 TSEKLRVDNSIKLWDVYGAKVF--------ELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred CCcccccCcceEEEEecCchhh--------hhhhccccCCcccceeeccCC
Confidence 2111245889999998644332 356677777776666655543
No 281
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.36 E-value=5.9e-09 Score=96.14 Aligned_cols=240 Identities=14% Similarity=0.270 Sum_probs=153.9
Q ss_pred CceEEEEcCCCCEEEEEEC---C---CcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeC---CCcEEEEec
Q 019847 60 YPTSVSWSHDAKTLAVGYM---D---SKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSK---DKSIINHDV 130 (335)
Q Consensus 60 ~v~~~~~~~~~~~l~~~~~---d---g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~~~d~ 130 (335)
.-..++|-.||+|+|+.+. . ..++||+-+ |++...-+.-.+--.+++|.| .|+++++... ...|.+|.-
T Consensus 211 ~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrP-sG~lIA~~q~~~~~~~VvFfEr 288 (928)
T PF04762_consen 211 GRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRP-SGNLIASSQRLPDRHDVVFFER 288 (928)
T ss_pred CceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCC-CCCEEEEEEEcCCCcEEEEEec
Confidence 4567889999999999874 2 479999965 666555554455566889999 9999998765 345667764
Q ss_pred ccCCeeeEE----eecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeecc-CCCCCeeEEEecCCCCcEE
Q 019847 131 RVSNNVTSC----IKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFT-DHCGGVKALAWSPHQVNVL 205 (335)
Q Consensus 131 ~~~~~~~~~----~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~ 205 (335)
+ +-. ... +......|..+.|++++..||..-.|. |.+|-..+.. +-..+.+. .....+..+.|+|..+.-+
T Consensus 289 N-GLr-hgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYH-WYLKqei~~~~~~~~~~~~Wdpe~p~~L 364 (928)
T PF04762_consen 289 N-GLR-HGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYH-WYLKQEIRFSSSESVNFVKWDPEKPLRL 364 (928)
T ss_pred C-CcE-eeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCE-EEEEEEEEccCCCCCCceEECCCCCCEE
Confidence 3 221 111 123456799999999999999988665 9999876532 11112221 1233455599999877655
Q ss_pred EEecCCCCCeEEEEECC----C----------------Cce----------------EEEeecCCcEeEEEeCCCCceee
Q 019847 206 ATGGGREDGCIKIWNVQ----K----------------GTC----------------IHGIDAKAQICGLEWNRHHKEIL 249 (335)
Q Consensus 206 ~~~~g~~d~~i~i~d~~----~----------------~~~----------------~~~~~~~~~~~~~~~~~~~~~~~ 249 (335)
.... .+|.+..++.. . |.. ...+..+.++.+++|++++..++
T Consensus 365 ~v~t--~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~a 442 (928)
T PF04762_consen 365 HVLT--SNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFA 442 (928)
T ss_pred EEEe--cCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEE
Confidence 5554 44666554431 1 111 12233456789999999987655
Q ss_pred eeeeeeeecCCCeEEEEECCCCce--------eeccc----------CCCCceeEeEEcCCCCEEEEEeCC---CcEEEE
Q 019847 250 SGHGFSASGDGNKLCLWKYPNMTK--------VGELQ----------SSNSRILDLSQSPDGLTVATAGAD---ETIRFW 308 (335)
Q Consensus 250 ~~~~~~~~~~~~~i~i~d~~~~~~--------~~~~~----------~~~~~i~~~~~~~~~~~l~~~~~d---g~v~iw 308 (335)
+- ..||.+.+|....... ...+. .....+..++|..+..+++....+ ..+.++
T Consensus 443 vl------~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 516 (928)
T PF04762_consen 443 VL------TSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLV 516 (928)
T ss_pred EE------ECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEE
Confidence 54 5699999998543221 11111 123357888888888777666554 678888
Q ss_pred ecCCC
Q 019847 309 EAFGP 313 (335)
Q Consensus 309 ~~~~~ 313 (335)
++...
T Consensus 517 ~~~~~ 521 (928)
T PF04762_consen 517 DIDDS 521 (928)
T ss_pred EeccC
Confidence 87543
No 282
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.36 E-value=8.1e-09 Score=78.82 Aligned_cols=232 Identities=16% Similarity=0.212 Sum_probs=136.6
Q ss_pred EEEcCCCCEEEEEECCCcEEEEeCCCc--eeEeee---cccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeE
Q 019847 64 VSWSHDAKTLAVGYMDSKLQLWDAETS--KLVRNL---EGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTS 138 (335)
Q Consensus 64 ~~~~~~~~~l~~~~~dg~i~iw~~~~~--~~~~~~---~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~ 138 (335)
++.+++|+.||+- .|..|.|-..++. ..+.+. +...-.=+.++|+| ++.+|+.+...|+|++||+.. ..+..
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g-~~lf~ 79 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLMG-SELFV 79 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECC-CCcEEEEEcCCCeEEEEeccc-ceeEE
Confidence 5677889877776 5667777765542 222222 22233457899999 999999999999999999974 33222
Q ss_pred Eeec------CCCCEEEEEeecC------CCEEEEEeCCCeEEEEEccC--CCcccceeecc--C-CCCCeeEEEecCCC
Q 019847 139 CIKA------HSGEVCGLKWSNE------GNLLASGGDDNVVRIWERSK--MSSSKSLHRFT--D-HCGGVKALAWSPHQ 201 (335)
Q Consensus 139 ~~~~------~~~~i~~~~~~~~------~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~--~-~~~~v~~~~~~~~~ 201 (335)
.-.. ...+|..+.|.+. ...|++-..+|.++-|-+.. .+..+..+.+. . +...|.++.++|..
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h 159 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH 159 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence 2111 2356777777552 12466667788888777632 22223333322 2 46789999999998
Q ss_pred CcEEEEecCCCCC----------eEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCC
Q 019847 202 VNVLATGGGREDG----------CIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNM 271 (335)
Q Consensus 202 ~~~~~~~~g~~d~----------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~ 271 (335)
..|++.|. ... -+..|.+-++.+.... ..+.+...-. ...+..+|.+.+.
T Consensus 160 ~LLlVgG~--~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~---------v~~~~~~~~~---------~~~~~~~~~~~~~ 219 (282)
T PF15492_consen 160 RLLLVGGC--EQNQDGMSKASSCGLTAWRILSDSPYYKQ---------VTSSEDDITA---------SSKRRGLLRIPSF 219 (282)
T ss_pred CEEEEecc--CCCCCccccccccCceEEEEcCCCCcEEE---------ccccCccccc---------cccccceeeccce
Confidence 65554443 332 2333443333222111 0000000000 0112233333333
Q ss_pred ceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCC
Q 019847 272 TKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDED 318 (335)
Q Consensus 272 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~ 318 (335)
+...........|..|..||||..||+...+|.|.+|++..-....+
T Consensus 220 ~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~ 266 (282)
T PF15492_consen 220 KFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRS 266 (282)
T ss_pred eeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcc
Confidence 32222233456799999999999999999999999999987655543
No 283
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.35 E-value=4.6e-11 Score=101.43 Aligned_cols=230 Identities=17% Similarity=0.271 Sum_probs=158.1
Q ss_pred CCCceEEEEcCCCCEEEEEECCCcEEEEeCCCce---------------eEeeecccccceeEeeecCCCCCEEEEeeCC
Q 019847 58 DDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSK---------------LVRNLEGHHRRVATSSWNHWNGHILTSGSKD 122 (335)
Q Consensus 58 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~---------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 122 (335)
.....|++|+....++|+|+.||.+++..+.+.. .-+.+.+|...|.-+.|+. +...|-+...+
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe-~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNE-NNQKLTTSDTS 92 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecc-ccccccccCCC
Confidence 3457899999999999999999999999876532 2245778999999999998 88889999999
Q ss_pred CcEEEEecccCCeeeEEeec-CCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCC
Q 019847 123 KSIINHDVRVSNNVTSCIKA-HSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQ 201 (335)
Q Consensus 123 g~i~~~d~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 201 (335)
|.|.+|-+-.+......... ..+.|.+++|+.+|..++....||.|.+=.+....... +.++ ......+.|++|.
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwg--KeLk--g~~l~hv~ws~D~ 168 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWG--KELK--GQLLAHVLWSEDL 168 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecc--hhcc--hheccceeecccH
Confidence 99999999876654333332 45668999999999999999999988776655322110 0111 1123468899999
Q ss_pred CcEEEEecCCCCCeEEEEECCCC-------ceEEEee-----cCCcEeEEEeC--------CCCceeeeeeeeeeecCCC
Q 019847 202 VNVLATGGGREDGCIKIWNVQKG-------TCIHGID-----AKAQICGLEWN--------RHHKEILSGHGFSASGDGN 261 (335)
Q Consensus 202 ~~~~~~~~g~~d~~i~i~d~~~~-------~~~~~~~-----~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~ 261 (335)
+.++..- .+|.+.+||.+.. .+..... .+..+..+.|. |+...++++ -.+|
T Consensus 169 ~~~Lf~~---ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavc------y~nG 239 (1189)
T KOG2041|consen 169 EQALFKK---ANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVC------YANG 239 (1189)
T ss_pred HHHHhhh---cCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEE------EcCc
Confidence 7766643 6899999997643 1111111 12234445443 455555555 4577
Q ss_pred eEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCC
Q 019847 262 KLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGAD 302 (335)
Q Consensus 262 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 302 (335)
.+.+..-.+......+.. .-.+....|+++|..|+.++.|
T Consensus 240 r~QiMR~eND~~Pvv~dt-gm~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 240 RMQIMRSENDPEPVVVDT-GMKIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred eehhhhhcCCCCCeEEec-ccEeecceecCCCcEEEEccCc
Confidence 777765443322222221 2468889999999999999864
No 284
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=1e-08 Score=87.00 Aligned_cols=221 Identities=10% Similarity=0.001 Sum_probs=133.7
Q ss_pred cEEEEeCCCceeEeeecccccceeEeeecCCCCCE-EEEeeC---CCcEEEEecccCCeeeEEeecCCCCEEEEEeecCC
Q 019847 81 KLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHI-LTSGSK---DKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEG 156 (335)
Q Consensus 81 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-l~~~~~---dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~ 156 (335)
.|.+-|..... .+.+... .......|+| +++. ++..+. +..|.++|+.+++. ..+....+......|+|||
T Consensus 170 ~l~~~d~dg~~-~~~~~~~-~~~~~p~wSp-DG~~~i~y~s~~~~~~~Iyv~dl~tg~~--~~lt~~~g~~~~~~~SPDG 244 (419)
T PRK04043 170 NIVLADYTLTY-QKVIVKG-GLNIFPKWAN-KEQTAFYYTSYGERKPTLYKYNLYTGKK--EKIASSQGMLVVSDVSKDG 244 (419)
T ss_pred eEEEECCCCCc-eeEEccC-CCeEeEEECC-CCCcEEEEEEccCCCCEEEEEECCCCcE--EEEecCCCcEEeeEECCCC
Confidence 56665654333 3334333 3778899999 7763 554433 34688899876553 2233456666778899999
Q ss_pred CEEEEEe-CC--CeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecC
Q 019847 157 NLLASGG-DD--NVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAK 233 (335)
Q Consensus 157 ~~l~~~~-~d--g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~ 233 (335)
+.++... .+ ..|.++|+.... ...+..+........|+|||+.++.+........|++.|+.+++..+.....
T Consensus 245 ~~la~~~~~~g~~~Iy~~dl~~g~----~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g 320 (419)
T PRK04043 245 SKLLLTMAPKGQPDIYLYDTNTKT----LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHG 320 (419)
T ss_pred CEEEEEEccCCCcEEEEEECCCCc----EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCC
Confidence 8776543 23 468888876532 2233333333345689999998888764112237888899887764433322
Q ss_pred CcEeEEEeCCCCceeeeeeeeeeec---CCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCC-C--cEEE
Q 019847 234 AQICGLEWNRHHKEILSGHGFSASG---DGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGAD-E--TIRF 307 (335)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~v~i 307 (335)
.. ...|+|+|+.++....-.... ....|.+.|+.+++.. .+... .......|+|||+.|+..+.+ + .+.+
T Consensus 321 ~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~ 396 (419)
T PRK04043 321 KN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGI 396 (419)
T ss_pred Cc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEE
Confidence 22 348999999987653210000 1147888898887653 33322 223458899999988766543 3 3556
Q ss_pred EecCCCC
Q 019847 308 WEAFGPS 314 (335)
Q Consensus 308 w~~~~~~ 314 (335)
.++.+..
T Consensus 397 ~~l~g~~ 403 (419)
T PRK04043 397 IRLNYNK 403 (419)
T ss_pred EecCCCe
Confidence 6666543
No 285
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.34 E-value=2.1e-11 Score=91.04 Aligned_cols=154 Identities=14% Similarity=0.146 Sum_probs=107.2
Q ss_pred eeeecCCceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEE-----CCCcEEEEeCCCceeEee
Q 019847 21 VIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGY-----MDSKLQLWDAETSKLVRN 95 (335)
Q Consensus 21 ~~~~~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----~dg~i~iw~~~~~~~~~~ 95 (335)
......+++..+..||.+.+++.+.. .....+.+.-...-.+.++...++.+.++. .-+..+.|+++..+....
T Consensus 96 ~~s~~~t~V~~~~~dg~~~v~s~~~~-~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~ 174 (319)
T KOG4714|consen 96 ACTMTDNRVCIGYADGSLAVFSTDKD-LALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIP 174 (319)
T ss_pred cccccCCceEecCCCceEEEEechHH-HhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccc
Confidence 34445567888889999999997652 111111111111223334444566665542 223566666654433222
Q ss_pred ecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeec-CCCEEEEEeCCCeEEEEEcc
Q 019847 96 LEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSN-EGNLLASGGDDNVVRIWERS 174 (335)
Q Consensus 96 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~ 174 (335)
-+.....|.+++-+|...+++++|+.||.+.+||.+....+...+..|+.+++.+.|+| ++..|+++++||.+..||..
T Consensus 175 ~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 175 SKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAS 254 (319)
T ss_pred cccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCC
Confidence 22233459999999988889999999999999999988777788889999999999999 78899999999999999955
Q ss_pred C
Q 019847 175 K 175 (335)
Q Consensus 175 ~ 175 (335)
+
T Consensus 255 ~ 255 (319)
T KOG4714|consen 255 T 255 (319)
T ss_pred C
Confidence 3
No 286
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.32 E-value=3.5e-11 Score=99.29 Aligned_cols=266 Identities=14% Similarity=0.226 Sum_probs=173.0
Q ss_pred cCCceEEEecCCeEEEEEecC-----CceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeec--
Q 019847 25 GRNNVLAVALGPVLFLWKWEN-----GKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLE-- 97 (335)
Q Consensus 25 ~~~~~~~~~~~~~i~vw~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-- 97 (335)
+.+.+++++.|++|++|.++. +.....+++..|+.+|.++.|-.+.++++++ ||.|++||.--++++..+.
T Consensus 746 NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~da 823 (1034)
T KOG4190|consen 746 NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDA 823 (1034)
T ss_pred cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcC
Confidence 346899999999999999864 2233577888999999999999998888876 8899999988887766443
Q ss_pred ccccceeEeeecCC-CCCEEEEe-eCCCcEEEEecccCCeeeE--E--eecCCCCEEEEEeecCCCEEEEEeCCCeEEEE
Q 019847 98 GHHRRVATSSWNHW-NGHILTSG-SKDKSIINHDVRVSNNVTS--C--IKAHSGEVCGLKWSNEGNLLASGGDDNVVRIW 171 (335)
Q Consensus 98 ~~~~~v~~~~~~~~-~~~~l~~~-~~dg~i~~~d~~~~~~~~~--~--~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw 171 (335)
...+.+..+...+. +..++++| +...+++++|.+..+.... . ..+....+.+++..+.|+.++++-..|.|.+.
T Consensus 824 pk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~L 903 (1034)
T KOG4190|consen 824 PKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAIL 903 (1034)
T ss_pred cccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEE
Confidence 22334444444443 44455554 7788999999987654222 1 13344678999999999999999999999999
Q ss_pred EccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEE-EECCCCceEEEeecCC-cEeEEEeCCCCceee
Q 019847 172 ERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKI-WNVQKGTCIHGIDAKA-QICGLEWNRHHKEIL 249 (335)
Q Consensus 172 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i-~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 249 (335)
|.+++. .+.......-....++ .|..+.++.+. .|.++.+ |-.-.+......+.+. +..-+ ..-|..++
T Consensus 904 DaR~G~---vINswrpmecdllqla-apsdq~L~~sa---ldHslaVnWhaldgimh~q~kpppepahfl--qsvgpSLV 974 (1034)
T KOG4190|consen 904 DARNGK---VINSWRPMECDLLQLA-APSDQALAQSA---LDHSLAVNWHALDGIMHLQDKPPPEPAHFL--QSVGPSLV 974 (1034)
T ss_pred ecCCCc---eeccCCcccchhhhhc-CchhHHHHhhc---ccceeEeeehhcCCeeeeccCCCCcchhhh--hccCceeE
Confidence 988753 3444443333344443 24443444444 6888888 8776665544443322 11111 11233333
Q ss_pred eeeeeeeecCCCeEEEEECCC----Cceeeccc--CCCCceeEeEEcCCCCEEEEEeCCCcEEE
Q 019847 250 SGHGFSASGDGNKLCLWKYPN----MTKVGELQ--SSNSRILDLSQSPDGLTVATAGADETIRF 307 (335)
Q Consensus 250 ~~~~~~~~~~~~~i~i~d~~~----~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~v~i 307 (335)
+. ...+.+.+|.-.. ...+..++ ...+..++++.-|-..-++.|.+.|.|.+
T Consensus 975 ~a------~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 975 TA------QNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred Ee------ccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 33 4566677774211 11111222 23456788888887777778888888875
No 287
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.31 E-value=6.8e-10 Score=86.35 Aligned_cols=249 Identities=14% Similarity=0.221 Sum_probs=176.2
Q ss_pred EEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCC-CceeEeeec-ccccceeEeeecCCCCCEEEEeeCCCcEEEE
Q 019847 51 LLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAE-TSKLVRNLE-GHHRRVATSSWNHWNGHILTSGSKDKSIINH 128 (335)
Q Consensus 51 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~ 128 (335)
...++||.+.++....-|...-+++.+.|.+++||--. .++.-..+. ....+++++.+.+ +...|++|-.+|++.-+
T Consensus 17 l~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~-e~~~L~vg~~ngtvtef 95 (404)
T KOG1409|consen 17 LSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVS-ESRRLYVGQDNGTVTEF 95 (404)
T ss_pred hhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeec-cceEEEEEEecceEEEE
Confidence 44567899999999898988889999999999999543 344333332 2457889999998 88999999999999988
Q ss_pred ecccCC---eeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEE
Q 019847 129 DVRVSN---NVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVL 205 (335)
Q Consensus 129 d~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 205 (335)
.+...- ...+....|...+..+-|+....++++.+.|..+.---.+.+...... .+. ..-+++.+.-. ..
T Consensus 96 s~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y-~~~---~~~t~~~~d~~---~~ 168 (404)
T KOG1409|consen 96 ALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGY-NFE---TPASALQFDAL---YA 168 (404)
T ss_pred EhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccce-Eee---ccCCCCceeeE---EE
Confidence 775322 234456679999999999998899999999987654433332111111 110 01111111110 12
Q ss_pred EEecCCCCCeEEEEECCC--CceEEEeec-CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCce-eecccCCC
Q 019847 206 ATGGGREDGCIKIWNVQK--GTCIHGIDA-KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTK-VGELQSSN 281 (335)
Q Consensus 206 ~~~~g~~d~~i~i~d~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~-~~~~~~~~ 281 (335)
.. |...|.|..-.+.. -.++.++.. ...+.++.|.|....+.+| ..|..+.+||+.-.+- ...+.+|.
T Consensus 169 fv--Gd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg------~~d~~vi~wdigg~~g~~~el~gh~ 240 (404)
T KOG1409|consen 169 FV--GDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSG------ASDHSVIMWDIGGRKGTAYELQGHN 240 (404)
T ss_pred Ee--cccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEec------cccCceEEEeccCCcceeeeeccch
Confidence 22 33566666555433 344555544 4689999999999999988 6799999999976543 45677899
Q ss_pred CceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCC
Q 019847 282 SRILDLSQSPDGLTVATAGADETIRFWEAFGPSG 315 (335)
Q Consensus 282 ~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~ 315 (335)
..|..+...+--+.|++++.||.|-+|+++....
T Consensus 241 ~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~ 274 (404)
T KOG1409|consen 241 DKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRV 274 (404)
T ss_pred hhhhhhhhhhhheeeeeccCCCeEEEEeccceee
Confidence 9999998888888999999999999999987543
No 288
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.30 E-value=1.4e-11 Score=101.54 Aligned_cols=207 Identities=13% Similarity=0.231 Sum_probs=149.1
Q ss_pred EeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCe------eeEEeecCCCCEEEEEeecCCCEEEEEeCCC
Q 019847 93 VRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNN------VTSCIKAHSGEVCGLKWSNEGNLLASGGDDN 166 (335)
Q Consensus 93 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 166 (335)
+..+.+|...|..+.-.. +.+.+++++.|.++++|.++.... ..-+++.|..+|.++.|-.+.++++++ ||
T Consensus 728 L~nf~GH~~~iRai~Aid-NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~ 804 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAID-NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG 804 (1034)
T ss_pred eecccCcHHHhHHHHhcc-cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence 456788999999988777 889999999999999999975432 334567899999999999998888765 78
Q ss_pred eEEEEEccCCCcccceeeccCCCCCeeEEEecCC--CCcEEEEecCCCCCeEEEEECCCCceEEEeec------CCcEeE
Q 019847 167 VVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPH--QVNVLATGGGREDGCIKIWNVQKGTCIHGIDA------KAQICG 238 (335)
Q Consensus 167 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~------~~~~~~ 238 (335)
.|.+||.-.+.....+..-. ..+.+..+..-|+ ...+++.++ ...+++++|.+..+-...++. +.-+.+
T Consensus 805 giHlWDPFigr~Laq~~dap-k~~a~~~ikcl~nv~~~iliAgcs--aeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ 881 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAP-KEGAGGNIKCLENVDRHILIAGCS--AESTVKLFDARSCEWTCELKVCNAPGPNALTRA 881 (1034)
T ss_pred cceeecccccchhHhhhcCc-ccCCCceeEecccCcchheeeecc--chhhheeeecccccceeeEEeccCCCCchheeE
Confidence 99999954332222121111 1233333444443 333444334 789999999999887766653 235789
Q ss_pred EEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEE-EecCC
Q 019847 239 LEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRF-WEAFG 312 (335)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i-w~~~~ 312 (335)
++..+.|+.++++ -.+|.|.+.|.++|+.+............++ .|.++.|+....|..+.+ |....
T Consensus 882 iaVa~~GN~lAa~------LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhald 949 (1034)
T KOG4190|consen 882 IAVADKGNKLAAA------LSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALD 949 (1034)
T ss_pred EEeccCcchhhHH------hcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcC
Confidence 9999999999887 4589999999999999988877665555555 355567777777777777 75443
No 289
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.30 E-value=4e-08 Score=77.91 Aligned_cols=217 Identities=13% Similarity=0.134 Sum_probs=139.9
Q ss_pred EEEEcC-CCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEee
Q 019847 63 SVSWSH-DAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIK 141 (335)
Q Consensus 63 ~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~ 141 (335)
++.|.+ ++.++++-...+.|..|+..+++... +.... ...+.+...+ ..|+.+...+ +.++|..+++. .....
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~-~~~~~ 77 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPD-GRLYVADSGG-IAVVDPDTGKV-TVLAD 77 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTT-SEEEEEETTC-EEEEETTTTEE-EEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccC-CEEEEEEcCc-eEEEecCCCcE-EEEee
Confidence 578888 66666666678999999998876543 22122 6677777425 4455555444 45558876532 22222
Q ss_pred c-----CCCCEEEEEeecCCCEEEEEeCC--------CeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEe
Q 019847 142 A-----HSGEVCGLKWSNEGNLLASGGDD--------NVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATG 208 (335)
Q Consensus 142 ~-----~~~~i~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 208 (335)
. .....+.+++.|+|++.++.... |.|..++.. .. .......-...+.++|+|+++.++++.
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~----~~~~~~~~~~pNGi~~s~dg~~lyv~d 152 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK----VTVVADGLGFPNGIAFSPDGKTLYVAD 152 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE----EEEEEEEESSEEEEEEETTSSEEEEEE
T ss_pred ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-Ce----EEEEecCcccccceEECCcchheeecc
Confidence 1 34567899999999977776543 557777754 22 222222334578999999998888877
Q ss_pred cCCCCCeEEEEECCCCce-E---EEe---ecC-CcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCC
Q 019847 209 GGREDGCIKIWNVQKGTC-I---HGI---DAK-AQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSS 280 (335)
Q Consensus 209 ~g~~d~~i~i~d~~~~~~-~---~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~ 280 (335)
+ ..+.|..+++..... + ..+ ... ...-.++++.+|+..++. ...+.|.+++.+ ++.+..+...
T Consensus 153 s--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~------~~~~~I~~~~p~-G~~~~~i~~p 223 (246)
T PF08450_consen 153 S--FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVAD------WGGGRIVVFDPD-GKLLREIELP 223 (246)
T ss_dssp T--TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEE------ETTTEEEEEETT-SCEEEEEE-S
T ss_pred c--ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEE------cCCCEEEEECCC-ccEEEEEcCC
Confidence 6 789999999863221 1 112 222 247789999999877764 358999999977 8888877766
Q ss_pred CCceeEeEEc-CCCCEEEEE
Q 019847 281 NSRILDLSQS-PDGLTVATA 299 (335)
Q Consensus 281 ~~~i~~~~~~-~~~~~l~~~ 299 (335)
...+++++|. ++.+.|+..
T Consensus 224 ~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 224 VPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp SSSEEEEEEESTTSSEEEEE
T ss_pred CCCEEEEEEECCCCCEEEEE
Confidence 5689999994 665555543
No 290
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.29 E-value=2.6e-09 Score=80.46 Aligned_cols=199 Identities=9% Similarity=0.005 Sum_probs=134.6
Q ss_pred ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcC-CCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEe
Q 019847 28 NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSH-DAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATS 106 (335)
Q Consensus 28 ~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~ 106 (335)
.+++++..|...+|...+.+.. ......|...|+-+.=.. ..-.+..++.|.++++.+++-+..........-.+.++
T Consensus 86 ~la~gG~~g~fd~~~~~tn~~h-~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~ 164 (344)
T KOG4532|consen 86 TLADGGASGQFDLFACNTNDGH-LYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSL 164 (344)
T ss_pred EEEeccccceeeeecccCcccc-eeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceeee
Confidence 4555668899999998876542 222233443332221111 22346667788889998887554333332222338889
Q ss_pred eecCCCCCEEEEeeCCCcEEEEecccCCeeeE--EeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccc--e
Q 019847 107 SWNHWNGHILTSGSKDKSIINHDVRVSNNVTS--CIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKS--L 182 (335)
Q Consensus 107 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~ 182 (335)
.+++ +++++++.+....|..|.+........ .....+..=.+..|+.....+|++..||++.|||++....... .
T Consensus 165 ~~sn-d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~s 243 (344)
T KOG4532|consen 165 HYSN-DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEIS 243 (344)
T ss_pred EEcC-CCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhc
Confidence 9999 999999999999999999986554332 2333445556788999889999999999999999997543321 1
Q ss_pred eeccCCCCCeeEEEecCCCCc--EEEEecCCCCCeEEEEECCCCceEEEee
Q 019847 183 HRFTDHCGGVKALAWSPHQVN--VLATGGGREDGCIKIWNVQKGTCIHGID 231 (335)
Q Consensus 183 ~~~~~~~~~v~~~~~~~~~~~--~~~~~~g~~d~~i~i~d~~~~~~~~~~~ 231 (335)
..-..|++.+..+.|++.|.. |+.+- .-+.+.+.|+++++..+.+.
T Consensus 244 strp~hnGa~R~c~Fsl~g~lDLLf~sE---hfs~~hv~D~R~~~~~q~I~ 291 (344)
T KOG4532|consen 244 STRPHHNGAFRVCRFSLYGLLDLLFISE---HFSRVHVVDTRNYVNHQVIV 291 (344)
T ss_pred ccCCCCCCceEEEEecCCCcceEEEEec---CcceEEEEEcccCceeeEEe
Confidence 223458999999999986642 44433 46789999999987766554
No 291
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.28 E-value=2.9e-11 Score=93.85 Aligned_cols=155 Identities=14% Similarity=0.228 Sum_probs=119.5
Q ss_pred EEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccC----CeeeEEeecCCCCEEE
Q 019847 74 AVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVS----NNVTSCIKAHSGEVCG 149 (335)
Q Consensus 74 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~----~~~~~~~~~~~~~i~~ 149 (335)
++.+.+-.+-+-|+++|-. +.|. ..+.|.++.|.. .+++++.|..+|.|..+|++.. ......+ -|.+.|++
T Consensus 228 fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvts 303 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTS 303 (425)
T ss_pred ecccccceeEEEEeecccc-cccc-cchhHHHHHhcc-cCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhh
Confidence 4444566788889888753 3343 667899999988 8999999999999999999876 2333333 48999999
Q ss_pred EEeec-CCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeE--EEecCCCCcEEEEecCCCCCeEEEEECCCCce
Q 019847 150 LKWSN-EGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKA--LAWSPHQVNVLATGGGREDGCIKIWNVQKGTC 226 (335)
Q Consensus 150 ~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~ 226 (335)
+..-. ++++|++.+.+|+|++||++..+..+.+..+++|...-.- +-..+....+++ ++ +|...|+|.++.+..
T Consensus 304 lq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s-~G--dDcytRiWsl~~ghL 380 (425)
T KOG2695|consen 304 LQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFS-VG--DDCYTRIWSLDSGHL 380 (425)
T ss_pred hhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEE-cc--CeeEEEEEecccCce
Confidence 98877 7889999999999999999987766678888888654333 334455544555 54 899999999999999
Q ss_pred EEEeecCCc
Q 019847 227 IHGIDAKAQ 235 (335)
Q Consensus 227 ~~~~~~~~~ 235 (335)
+.+++.+..
T Consensus 381 l~tipf~~s 389 (425)
T KOG2695|consen 381 LCTIPFPYS 389 (425)
T ss_pred eeccCCCCc
Confidence 998876543
No 292
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=4e-10 Score=89.39 Aligned_cols=248 Identities=16% Similarity=0.190 Sum_probs=157.7
Q ss_pred eecCCCCCceEEEEcCCCC-EEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecc
Q 019847 53 QVPGEDDYPTSVSWSHDAK-TLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVR 131 (335)
Q Consensus 53 ~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~ 131 (335)
-+++|...|..++|+|..+ ++..++.+..|+|.|+++...+..+..+ ..+++++|.-++.+++.+|..+|.|.+||++
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R 266 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMR 266 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEcc
Confidence 4567888999999999776 7888899999999999999999888877 8999999998788999999999999999999
Q ss_pred cCCeeeEEeec--CCCCEEEEEe------ecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCc
Q 019847 132 VSNNVTSCIKA--HSGEVCGLKW------SNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVN 203 (335)
Q Consensus 132 ~~~~~~~~~~~--~~~~i~~~~~------~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 203 (335)
..+.....+.+ ...+|..++. .+.+.+|+..+.+ +..|.+.......+.....+..+...++..++....
T Consensus 267 ~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh 344 (463)
T KOG1645|consen 267 QPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNH 344 (463)
T ss_pred CCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecCccce
Confidence 77654443332 2234444433 2234455544433 566765532222122112224566777777777777
Q ss_pred EEEEecCCCCC---eEE----EEECCCCceEEEeec---CCc-----Ee-EEEeCCCCceeeeeeeeeeecCCCeEEEEE
Q 019847 204 VLATGGGREDG---CIK----IWNVQKGTCIHGIDA---KAQ-----IC-GLEWNRHHKEILSGHGFSASGDGNKLCLWK 267 (335)
Q Consensus 204 ~~~~~~g~~d~---~i~----i~d~~~~~~~~~~~~---~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d 267 (335)
++++.- .+. +++ --|-.+|.++...+. +.+ -. .+.-.++..+++ + .+.+.+.+.+||
T Consensus 345 ~l~tyR--s~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv-~----~gd~tn~lil~D 417 (463)
T KOG1645|consen 345 LLLTYR--SNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIV-V----VGDSTNELILQD 417 (463)
T ss_pred EEEEec--CCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEE-E----ecCCcceeEEec
Confidence 777763 211 011 112233433322211 000 01 111223333333 2 236789999999
Q ss_pred CCCCceeecccCCCCceeEeEEcC-CC-CEEEEEeCCCcEEEEecCC
Q 019847 268 YPNMTKVGELQSSNSRILDLSQSP-DG-LTVATAGADETIRFWEAFG 312 (335)
Q Consensus 268 ~~~~~~~~~~~~~~~~i~~~~~~~-~~-~~l~~~~~dg~v~iw~~~~ 312 (335)
..+++.++++.-. .+|.++.... ++ .+|++- .|..++||+.+.
T Consensus 418 ~~s~evvQ~l~~~-epv~Dicp~~~n~~syLa~L-Td~~v~Iyk~es 462 (463)
T KOG1645|consen 418 PHSFEVVQTLALS-EPVLDICPNDTNGSSYLALL-TDDRVHIYKNES 462 (463)
T ss_pred cchhheeeecccC-cceeecceeecCCcchhhhe-ecceEEEEecCC
Confidence 9999999988654 6788876543 33 456555 466899987654
No 293
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=5.5e-10 Score=89.90 Aligned_cols=286 Identities=16% Similarity=0.140 Sum_probs=188.9
Q ss_pred CCCCcccccceeeeecCCceEEEecCCeEEEEEecCCc-eeeEEeecCCCCCceEEEEcCCCCEEEEEEC-CCcEEEEeC
Q 019847 10 APYLMEDYYSKVIDWGRNNVLAVALGPVLFLWKWENGK-VKKLLQVPGEDDYPTSVSWSHDAKTLAVGYM-DSKLQLWDA 87 (335)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vw~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iw~~ 87 (335)
..+...+....+++-..+.++.++.||.++.|.-..-. ..-...+..|...|.+++.+-++..+.+.+. |..++++|+
T Consensus 4 ksymhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDv 83 (558)
T KOG0882|consen 4 KSYMHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDV 83 (558)
T ss_pred hhhcccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEe
Confidence 34555565556666666889999999999999865422 2223344578888999999999999999777 999999999
Q ss_pred CCceeEeeecccccceeEeeecCCCC----CEEEEeeCCCcEEEEecccCCe-eeEEeecCCCCEEEEEeecCCCEEEEE
Q 019847 88 ETSKLVRNLEGHHRRVATSSWNHWNG----HILTSGSKDKSIINHDVRVSNN-VTSCIKAHSGEVCGLKWSNEGNLLASG 162 (335)
Q Consensus 88 ~~~~~~~~~~~~~~~v~~~~~~~~~~----~~l~~~~~dg~i~~~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~ 162 (335)
++-..+.-++.. .....+.|....+ .+-++.-.++.+.++|-....+ ......-|..+|..+.+++-+..+++.
T Consensus 84 En~DminmiKL~-~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSi 162 (558)
T KOG0882|consen 84 ENFDMINMIKLV-DLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSI 162 (558)
T ss_pred eccchhhhcccc-cCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeec
Confidence 876555333311 1112222322123 2233344678999999876553 334445699999999999999999999
Q ss_pred eCCCeEEEEEccCC-Cccc-----------ceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEe
Q 019847 163 GDDNVVRIWERSKM-SSSK-----------SLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGI 230 (335)
Q Consensus 163 ~~dg~i~iwd~~~~-~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~ 230 (335)
...|.|.-|..... +... -+..+........++.|+|++..+-..+ .|..|++++.++|+.++.+
T Consensus 163 D~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~---~DrkVR~F~~KtGklvqei 239 (558)
T KOG0882|consen 163 DISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLN---PDRKVRGFVFKTGKLVQEI 239 (558)
T ss_pred cccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccC---cccEEEEEEeccchhhhhh
Confidence 99999999997631 0000 0112223455678999999997666655 7999999999998766544
Q ss_pred ec----------------------------------CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeec
Q 019847 231 DA----------------------------------KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGE 276 (335)
Q Consensus 231 ~~----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~ 276 (335)
+. ...-..+.|...+++++.+.. -.|++.++.+++.++.
T Consensus 240 DE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~-------~gikvin~~tn~v~ri 312 (558)
T KOG0882|consen 240 DEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTI-------LGIKVINLDTNTVVRI 312 (558)
T ss_pred hccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecc-------eeEEEEEeecCeEEEE
Confidence 31 012345678888888887642 3466677666555433
Q ss_pred cc---------------------------CCCCceeEeEEcCCCCEEEEEeCCCcEEEE
Q 019847 277 LQ---------------------------SSNSRILDLSQSPDGLTVATAGADETIRFW 308 (335)
Q Consensus 277 ~~---------------------------~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw 308 (335)
+- +...+. +.+.+|..+++++-...+++++
T Consensus 313 ~gk~e~ir~~~~sl~q~~~k~~~~~~~~~a~~np~--~~~~~dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 313 LGKDEAIRFTRLSLYQGAQKSNLAALEVAASNNPL--LEFQKDPTIVCTAFKKNRFYLF 369 (558)
T ss_pred eccchhhhhhhHHHHhhhhhccchhhhhhhccCcc--cccCCCCeEEEeeeecceEEEE
Confidence 21 111111 2355676677777777777777
No 294
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.28 E-value=5.3e-08 Score=74.47 Aligned_cols=237 Identities=12% Similarity=0.085 Sum_probs=142.9
Q ss_pred cCCceEEEecCCeEEEEEecCCc--eeeEEee-cCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecc---
Q 019847 25 GRNNVLAVALGPVLFLWKWENGK--VKKLLQV-PGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEG--- 98 (335)
Q Consensus 25 ~~~~~~~~~~~~~i~vw~~~~~~--~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~--- 98 (335)
++++++|+-.|..|.|-..++.- .....+. +.....-+.++||||+.+||.+...|+|+++|+...+ +..+..
T Consensus 7 ~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~I~p~~~ 85 (282)
T PF15492_consen 7 SDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFVIPPAMS 85 (282)
T ss_pred CCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce-eEEcCcccc
Confidence 45688999999999888765432 1111222 2223345789999999999999999999999987533 333322
Q ss_pred ----cccceeEeeecCCC-----CCEEEEeeCCCcEEEEecccC--Ce--eeEE---eecCCCCEEEEEeecCCCEEEEE
Q 019847 99 ----HHRRVATSSWNHWN-----GHILTSGSKDKSIINHDVRVS--NN--VTSC---IKAHSGEVCGLKWSNEGNLLASG 162 (335)
Q Consensus 99 ----~~~~v~~~~~~~~~-----~~~l~~~~~dg~i~~~d~~~~--~~--~~~~---~~~~~~~i~~~~~~~~~~~l~~~ 162 (335)
-...|..+.|.+.. ...|++-..+|.++-|-+..+ +. .... ...+...|.++.++|..++|++|
T Consensus 86 ~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVg 165 (282)
T PF15492_consen 86 FPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVG 165 (282)
T ss_pred cCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEe
Confidence 23567777776532 335677777888887776321 11 1111 12346789999999998988887
Q ss_pred eCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCC------eEEEEECCCCceEEE-eecCCc
Q 019847 163 GDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDG------CIKIWNVQKGTCIHG-IDAKAQ 235 (335)
Q Consensus 163 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~------~i~i~d~~~~~~~~~-~~~~~~ 235 (335)
+.... +... -......+++-..-.+.++..-+.+ ..|+ +-.+|.+-+.+.... ......
T Consensus 166 G~~~~------~~~~-------s~a~~~GLtaWRiL~~~Pyyk~v~~-~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~ 231 (282)
T PF15492_consen 166 GCEQN------QDGM-------SKASSCGLTAWRILSDSPYYKQVTS-SEDDITASSKRRGLLRIPSFKFFSRQGQEQDG 231 (282)
T ss_pred ccCCC------CCcc-------ccccccCceEEEEcCCCCcEEEccc-cCccccccccccceeeccceeeeeccccCCCc
Confidence 75432 0000 0111223333333333333322211 0111 123344333222211 123557
Q ss_pred EeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCC
Q 019847 236 ICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNS 282 (335)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~ 282 (335)
|..|..||+|..|++. ..+|.|.+|++.+..+......++.
T Consensus 232 i~kmSlSPdg~~La~i------h~sG~lsLW~iPsL~~~~~W~~~eq 272 (282)
T PF15492_consen 232 IFKMSLSPDGSLLACI------HFSGSLSLWEIPSLRLQRSWKQDEQ 272 (282)
T ss_pred eEEEEECCCCCEEEEE------EcCCeEEEEecCcchhhcccchhhC
Confidence 9999999999999988 4599999999999888777654433
No 295
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.27 E-value=2.7e-08 Score=84.58 Aligned_cols=276 Identities=7% Similarity=-0.040 Sum_probs=159.0
Q ss_pred ecCCceEEEecCCeEEEEEecCCceeeEEeecCCCCCce-----EEEEcC--CCCEEEEEECCCcEEEEeCCCceeEeee
Q 019847 24 WGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPT-----SVSWSH--DAKTLAVGYMDSKLQLWDAETSKLVRNL 96 (335)
Q Consensus 24 ~~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~-----~~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 96 (335)
..++.+++.+.++.+.-+|.++|+..-...+........ .+.-.| ++..++.++.+|.+..+|.++|+.+.+.
T Consensus 67 v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~ 146 (394)
T PRK11138 67 VAYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQT 146 (394)
T ss_pred EECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccc
Confidence 345778888888999999999998766555433111100 001111 4567788888999999999999988877
Q ss_pred cccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeec--CCCEEEEEeCCCeEEEEEcc
Q 019847 97 EGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSN--EGNLLASGGDDNVVRIWERS 174 (335)
Q Consensus 97 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~iwd~~ 174 (335)
............ .+..++.+..++.+..+|.++++..-+.............-+| .+..++.++.+|.+..+|..
T Consensus 147 ~~~~~~~ssP~v---~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~ 223 (394)
T PRK11138 147 KVAGEALSRPVV---SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLME 223 (394)
T ss_pred cCCCceecCCEE---ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEcc
Confidence 643322212222 3456777888999999999988765443221110000000112 23356677788999988877
Q ss_pred CCCcccceeeccCC-CC---CeeEEEecC--CCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCcee
Q 019847 175 KMSSSKSLHRFTDH-CG---GVKALAWSP--HQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEI 248 (335)
Q Consensus 175 ~~~~~~~~~~~~~~-~~---~v~~~~~~~--~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (335)
+++..-........ .. ....+.-+| .+..+++.+ .+|.+..+|..+|+.+...+.... ..+. ..+..+
T Consensus 224 ~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~---~~g~l~ald~~tG~~~W~~~~~~~-~~~~--~~~~~v 297 (394)
T PRK11138 224 QGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALA---YNGNLVALDLRSGQIVWKREYGSV-NDFA--VDGGRI 297 (394)
T ss_pred CChhhheeccccCCCccchhcccccCCCcEEECCEEEEEE---cCCeEEEEECCCCCEEEeecCCCc-cCcE--EECCEE
Confidence 65432111100000 00 000111112 133455544 689999999999988766543221 1111 122233
Q ss_pred eeeeeeeeecCCCeEEEEECCCCceeecccCCCC-ceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCC
Q 019847 249 LSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNS-RILDLSQSPDGLTVATAGADETIRFWEAFGPSGD 316 (335)
Q Consensus 249 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~ 316 (335)
...+.++.+..+|..+++.+-....... ...+... .+.+|+.++.||.+.+.|..+++..
T Consensus 298 ------y~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~ 358 (394)
T PRK11138 298 ------YLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFV 358 (394)
T ss_pred ------EEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEE
Confidence 3336799999999999887654432111 1222222 2446788899999999998877544
No 296
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.26 E-value=5.3e-12 Score=109.41 Aligned_cols=221 Identities=15% Similarity=0.240 Sum_probs=159.4
Q ss_pred EeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCC--cEEEEe
Q 019847 52 LQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDK--SIINHD 129 (335)
Q Consensus 52 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~~~d 129 (335)
..+..|+...+|++|+-+.+.|++|+..|.|+++++.+|........|..+|+.+.-+. ++..+++.+.-. -..+|+
T Consensus 1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~-dgs~~Ltsss~S~PlsaLW~ 1173 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSV-DGSTQLTSSSSSSPLSALWD 1173 (1516)
T ss_pred hhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccC-CcceeeeeccccCchHHHhc
Confidence 34557888899999999999999999999999999999999999999999999999988 777666655433 467899
Q ss_pred cccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccc-eeeccCCCCCeeEEEecCCCCcEEEEe
Q 019847 130 VRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKS-LHRFTDHCGGVKALAWSPHQVNVLATG 208 (335)
Q Consensus 130 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~ 208 (335)
+.........+. .-.++.|+..-..-+.|.......+||+.+...... +....+.+..-++..|+|+.. ++.
T Consensus 1174 ~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~-LIl-- 1246 (1516)
T KOG1832|consen 1174 ASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDT-LIL-- 1246 (1516)
T ss_pred cccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcc-eEe--
Confidence 875443333332 345678887555555566556789999988654322 111112223346788999985 555
Q ss_pred cCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeE
Q 019847 209 GGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLS 288 (335)
Q Consensus 209 ~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~ 288 (335)
.|| .+||.+..+.++.+..-..-..=.|+|.|..++.- -.|||+++.+.++....-.. ..+.
T Consensus 1247 ---ndG--vLWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIIN-----------SEIwD~RTF~lLh~VP~Ldq--c~Vt 1308 (1516)
T KOG1832|consen 1247 ---NDG--VLWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIIN-----------SEIWDMRTFKLLHSVPSLDQ--CAVT 1308 (1516)
T ss_pred ---eCc--eeeeeccHHHHhhhhhheecccccccCCCceEEee-----------chhhhhHHHHHHhcCccccc--eEEE
Confidence 466 58999998888877654444455799999888764 25899999888877665433 4567
Q ss_pred EcCCCCEEEE
Q 019847 289 QSPDGLTVAT 298 (335)
Q Consensus 289 ~~~~~~~l~~ 298 (335)
|+..|..+..
T Consensus 1309 FNstG~VmYa 1318 (1516)
T KOG1832|consen 1309 FNSTGDVMYA 1318 (1516)
T ss_pred eccCccchhh
Confidence 7777765543
No 297
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.25 E-value=2.6e-10 Score=90.31 Aligned_cols=161 Identities=14% Similarity=0.189 Sum_probs=109.8
Q ss_pred ceEEEEcCCCCEEEEEECCCcEEEEeCCCcee----EeeecccccceeEeeecCCCCCEEEEeeCCC---cEEEEecccC
Q 019847 61 PTSVSWSHDAKTLAVGYMDSKLQLWDAETSKL----VRNLEGHHRRVATSSWNHWNGHILTSGSKDK---SIINHDVRVS 133 (335)
Q Consensus 61 v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---~i~~~d~~~~ 133 (335)
+..+..+|.++++|++..+....++++..... .... .-...-+++.|.. +......+..-| .+.+|....
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~-~v~~~~~ai~~~~-~~~sv~v~dkagD~~~~di~s~~~- 141 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS-CVPKRPTAISFIR-EDTSVLVADKAGDVYSFDILSADS- 141 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEe-ecccCcceeeeee-ccceEEEEeecCCceeeeeecccc-
Confidence 34556778899999998888877887754332 2221 1223344445544 333444444444 445555443
Q ss_pred CeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceee-ccCCCCCeeEEEecCCCCcEEEEecCCC
Q 019847 134 NNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHR-FTDHCGGVKALAWSPHQVNVLATGGGRE 212 (335)
Q Consensus 134 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~g~~ 212 (335)
.......+|-+.++.++|+||+++++++..|..|++-..... ..+.. ..+|..-|..++.-++. .+.+++ -
T Consensus 142 -~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~---f~IesfclGH~eFVS~isl~~~~--~LlS~s--G 213 (390)
T KOG3914|consen 142 -GRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPAT---FVIESFCLGHKEFVSTISLTDNY--LLLSGS--G 213 (390)
T ss_pred -cCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcc---cchhhhccccHhheeeeeeccCc--eeeecC--C
Confidence 224445689999999999999999999999999999775432 22332 35799999999998875 445544 5
Q ss_pred CCeEEEEECCCCceEEEeec
Q 019847 213 DGCIKIWNVQKGTCIHGIDA 232 (335)
Q Consensus 213 d~~i~i~d~~~~~~~~~~~~ 232 (335)
|+++++||+++|+.+.++..
T Consensus 214 D~tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 214 DKTLRLWDITSGKLLDTCDL 233 (390)
T ss_pred CCcEEEEecccCCcccccch
Confidence 99999999999999877754
No 298
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.24 E-value=7.1e-10 Score=83.02 Aligned_cols=161 Identities=17% Similarity=0.338 Sum_probs=103.6
Q ss_pred CCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCcee-EeeecccccceeEeeecCCCCCEEEEee-----CCCcEEEEec
Q 019847 57 EDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKL-VRNLEGHHRRVATSSWNHWNGHILTSGS-----KDKSIINHDV 130 (335)
Q Consensus 57 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~-----~dg~i~~~d~ 130 (335)
|+++-.+-+.+-.++.++++..||.+.+++.+.-.. ...+......-.+.++.. .++.+.++. .-+..+.|++
T Consensus 88 ~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~-~~~~i~s~~~g~~n~~d~~~a~~~ 166 (319)
T KOG4714|consen 88 NSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICR-HGNSILSGGCGNWNAQDNFYANTL 166 (319)
T ss_pred cCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceee-cccEEecCCcceEeeccceeeecc
Confidence 333333333444567899999999999999765211 111111111222223333 445554443 2235566776
Q ss_pred ccCCeeeEEeecCCCCEEEEEeec-CCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEec
Q 019847 131 RVSNNVTSCIKAHSGEVCGLKWSN-EGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGG 209 (335)
Q Consensus 131 ~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 209 (335)
+..+.+...... ...|.+++-+| +.+.+++|+.||.+-+||.+.. ..+...+..|+.++..+-|+|..+.-+.+++
T Consensus 167 ~p~~t~~~~~~~-~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~--~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~s 243 (319)
T KOG4714|consen 167 DPIKTLIPSKKA-LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNV--AMPVSLLKAHKAEIWEVHFHPKNPEHLFTCS 243 (319)
T ss_pred cccccccccccc-cccchhhhCCcccccEEEEecCCCeEEEEEcccc--cchHHHHHHhhhhhhheeccCCCchheeEec
Confidence 644433322222 23489999999 5667888999999999999876 3456667889999999999998776666666
Q ss_pred CCCCCeEEEEECCC
Q 019847 210 GREDGCIKIWNVQK 223 (335)
Q Consensus 210 g~~d~~i~i~d~~~ 223 (335)
+||.+.-||..+
T Consensus 244 --edGslw~wdas~ 255 (319)
T KOG4714|consen 244 --EDGSLWHWDAST 255 (319)
T ss_pred --CCCcEEEEcCCC
Confidence 999999999764
No 299
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.23 E-value=5e-10 Score=88.77 Aligned_cols=164 Identities=13% Similarity=0.183 Sum_probs=116.8
Q ss_pred EEEEEeecCCCEEEEEeCCCeEEEEEccCCCc-ccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCc
Q 019847 147 VCGLKWSNEGNLLASGGDDNVVRIWERSKMSS-SKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGT 225 (335)
Q Consensus 147 i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~ 225 (335)
...+..+++++++|.+..+....+++.+.... .+.+.... -...-+++.+..+....+++-.......+.+|....+.
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 34456678889999998888888888775443 22222221 22223444554444444444321155667777766666
Q ss_pred eEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeeccc-CCCCceeEeEEcCCCCEEEEEeCCCc
Q 019847 226 CIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQ-SSNSRILDLSQSPDGLTVATAGADET 304 (335)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~ 304 (335)
+...+-+-..+..++++||++.++++ ..|..|++-.+.....+..+. +|..-|..++.-++. .|+++|.|++
T Consensus 144 ~~~~lGhvSml~dVavS~D~~~Iita------DRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~-~LlS~sGD~t 216 (390)
T KOG3914|consen 144 CEPILGHVSMLLDVAVSPDDQFIITA------DRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY-LLLSGSGDKT 216 (390)
T ss_pred cchhhhhhhhhheeeecCCCCEEEEe------cCCceEEEEecCcccchhhhccccHhheeeeeeccCc-eeeecCCCCc
Confidence 66666666789999999999999987 679999998888776666654 699999999988775 4899999999
Q ss_pred EEEEecCCCCCCCC
Q 019847 305 IRFWEAFGPSGDED 318 (335)
Q Consensus 305 v~iw~~~~~~~~~~ 318 (335)
+++||+.+++....
T Consensus 217 lr~Wd~~sgk~L~t 230 (390)
T KOG3914|consen 217 LRLWDITSGKLLDT 230 (390)
T ss_pred EEEEecccCCcccc
Confidence 99999999887643
No 300
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.23 E-value=2.9e-07 Score=73.01 Aligned_cols=215 Identities=16% Similarity=0.241 Sum_probs=140.2
Q ss_pred eeeecC--CceEEEe-cCCeEEEEEecCCceeeEEeecCCCCCceEEEEc-CCCCEEEEEECCCcEEEEeCCCceeEeee
Q 019847 21 VIDWGR--NNVLAVA-LGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWS-HDAKTLAVGYMDSKLQLWDAETSKLVRNL 96 (335)
Q Consensus 21 ~~~~~~--~~~~~~~-~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 96 (335)
+..|.+ +.++.+. ..+.|+.|+..+++.. ...+++ ...+++. +++ .|+.+... .+.++|..+++.....
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~-~~~~~~----~~G~~~~~~~g-~l~v~~~~-~~~~~d~~~g~~~~~~ 76 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE-VIDLPG----PNGMAFDRPDG-RLYVADSG-GIAVVDPDTGKVTVLA 76 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEE-EEESSS----EEEEEEECTTS-EEEEEETT-CEEEEETTTTEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEE-EEecCC----CceEEEEccCC-EEEEEEcC-ceEEEecCCCcEEEEe
Confidence 466775 5666665 5789999999887643 333322 6788888 565 55555554 4666699888654443
Q ss_pred cc-----cccceeEeeecCCCCCEEEEeeCC--------CcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEE-EE
Q 019847 97 EG-----HHRRVATSSWNHWNGHILTSGSKD--------KSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLA-SG 162 (335)
Q Consensus 97 ~~-----~~~~v~~~~~~~~~~~~l~~~~~d--------g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~ 162 (335)
.. .....+.+++.+ ++++.++.... |.+..++.. ..... ....-...+.++|+|+++.|+ +-
T Consensus 77 ~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~--~~~~~-~~~~~~~pNGi~~s~dg~~lyv~d 152 (246)
T PF08450_consen 77 DLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD--GKVTV-VADGLGFPNGIAFSPDGKTLYVAD 152 (246)
T ss_dssp EEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT--SEEEE-EEEEESSEEEEEEETTSSEEEEEE
T ss_pred eccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCC--CeEEE-EecCcccccceEECCcchheeecc
Confidence 32 346788999999 88877776544 446666654 33233 233345678999999998775 55
Q ss_pred eCCCeEEEEEccCCCc-c---cceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecC-CcEe
Q 019847 163 GDDNVVRIWERSKMSS-S---KSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAK-AQIC 237 (335)
Q Consensus 163 ~~dg~i~iwd~~~~~~-~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~~~ 237 (335)
+..+.|..+++..... . ..+..+....+..-.+++..+|. +.++.. ..+.|.++|.+ |+.+..+..+ ..++
T Consensus 153 s~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~-l~va~~--~~~~I~~~~p~-G~~~~~i~~p~~~~t 228 (246)
T PF08450_consen 153 SFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGN-LWVADW--GGGRIVVFDPD-GKLLREIELPVPRPT 228 (246)
T ss_dssp TTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEE--TTTEEEEEETT-SCEEEEEE-SSSSEE
T ss_pred cccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCC-EEEEEc--CCCEEEEECCC-ccEEEEEcCCCCCEE
Confidence 6778899999864332 1 12222333333477899999995 555543 58999999987 9988888876 6899
Q ss_pred EEEeC-CCCceeee
Q 019847 238 GLEWN-RHHKEILS 250 (335)
Q Consensus 238 ~~~~~-~~~~~~~~ 250 (335)
+++|. ++.+.|+.
T Consensus 229 ~~~fgg~~~~~L~v 242 (246)
T PF08450_consen 229 NCAFGGPDGKTLYV 242 (246)
T ss_dssp EEEEESTTSSEEEE
T ss_pred EEEEECCCCCEEEE
Confidence 99994 56555543
No 301
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.22 E-value=2.9e-08 Score=84.40 Aligned_cols=263 Identities=9% Similarity=0.003 Sum_probs=154.7
Q ss_pred eecCCceEEEecCCeEEEEEecCCceeeEEeecCCCCCceE-EEEcCCCCEEEEEECCCcEEEEeCCCceeEeeeccccc
Q 019847 23 DWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTS-VSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHR 101 (335)
Q Consensus 23 ~~~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 101 (335)
...++.+++++.++.++.+|.++|+..-...+.+. +.+ ... .+..++++..+|.+.-+|.++|+.+........
T Consensus 117 ~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~---~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~ 191 (394)
T PRK11138 117 TVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAGE---ALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVP 191 (394)
T ss_pred EEECCEEEEEcCCCEEEEEECCCCCCcccccCCCc---eecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCC
Confidence 33456788888899999999999987655554321 111 111 245677788899999999999998877753211
Q ss_pred ceeE-eeecCC-CCCEEEEeeCCCcEEEEecccCCeeeEEeecCCC------CEEEEEeec--CCCEEEEEeCCCeEEEE
Q 019847 102 RVAT-SSWNHW-NGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSG------EVCGLKWSN--EGNLLASGGDDNVVRIW 171 (335)
Q Consensus 102 ~v~~-~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~------~i~~~~~~~--~~~~l~~~~~dg~i~iw 171 (335)
.... ..-+|. .+..++.++.+|.+..+|..+++..-+....... ....+.-+| .+..++.++.+|.+..+
T Consensus 192 ~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~al 271 (394)
T PRK11138 192 SLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVAL 271 (394)
T ss_pred cccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEE
Confidence 1100 000110 2345677788899999998876643322111000 011111223 34567777789999999
Q ss_pred EccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec--CCcEeEEEeCCCCceee
Q 019847 172 ERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA--KAQICGLEWNRHHKEIL 249 (335)
Q Consensus 172 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 249 (335)
|..+++. +-... ......+.. .+..+++.. .+|.+..+|..+|+.+-..+. .....+... .+..++
T Consensus 272 d~~tG~~---~W~~~--~~~~~~~~~--~~~~vy~~~---~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~ 339 (394)
T PRK11138 272 DLRSGQI---VWKRE--YGSVNDFAV--DGGRIYLVD---QNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLV 339 (394)
T ss_pred ECCCCCE---EEeec--CCCccCcEE--ECCEEEEEc---CCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEE
Confidence 9876532 22111 111112222 234566544 699999999999987654432 111111111 123333
Q ss_pred eeeeeeeecCCCeEEEEECCCCceeecccCCCCceeE-eEEcCCCCEEEEEeCCCcEEEEec
Q 019847 250 SGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILD-LSQSPDGLTVATAGADETIRFWEA 310 (335)
Q Consensus 250 ~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~-~~~~~~~~~l~~~~~dg~v~iw~~ 310 (335)
. ++.+|.+...|..+++.+.+.+-....+.+ ..+ .+..|+.++.||.++.++.
T Consensus 340 v------~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 340 V------GDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred E------EeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 3 367999999999999988776543332322 222 2347888999999988764
No 302
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.20 E-value=7.6e-09 Score=89.03 Aligned_cols=244 Identities=12% Similarity=0.175 Sum_probs=171.6
Q ss_pred CCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCC-----------CCEEEEeeCCCcEEE
Q 019847 59 DYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWN-----------GHILTSGSKDKSIIN 127 (335)
Q Consensus 59 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~-----------~~~l~~~~~dg~i~~ 127 (335)
..-.++.|+|.| ++|.|+. ..|.+-|..+-+.++.+..|...|+.+.|.|.. .-+|+++...|.|.+
T Consensus 16 sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil 93 (1062)
T KOG1912|consen 16 SNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIIL 93 (1062)
T ss_pred ccccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEE
Confidence 345788999888 6777764 479999999999999999999999999998731 225788888999999
Q ss_pred EecccCCeeeEEeecCCCCEEEEEeec---CC-CEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCc
Q 019847 128 HDVRVSNNVTSCIKAHSGEVCGLKWSN---EG-NLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVN 203 (335)
Q Consensus 128 ~d~~~~~~~~~~~~~~~~~i~~~~~~~---~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 203 (335)
||...... ...+..|..++..++|-+ +. ..|++-....++.+|+..+++ .+-..........|+.+.|-...
T Consensus 94 ~d~~~~s~-~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~---k~Wk~~ys~~iLs~f~~DPfd~r 169 (1062)
T KOG1912|consen 94 VDFVLASV-INWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGE---KFWKYDYSHEILSCFRVDPFDSR 169 (1062)
T ss_pred EEehhhhh-hhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCc---eeeccccCCcceeeeeeCCCCcc
Confidence 99986554 445677889999999977 33 466666778899999977653 34444444456677899987665
Q ss_pred EEEEecCCCCCeEEEEECCC-------CceEEEeecCC--------------------------cEeEEEeCCCCceeee
Q 019847 204 VLATGGGREDGCIKIWNVQK-------GTCIHGIDAKA--------------------------QICGLEWNRHHKEILS 250 (335)
Q Consensus 204 ~~~~~~g~~d~~i~i~d~~~-------~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~ 250 (335)
-++.-+ ..|.+.+-+.-. ++..+.-..+. ....++|+|.-+.++.
T Consensus 170 h~~~l~--s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lf 247 (1062)
T KOG1912|consen 170 HFCVLG--SKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILF 247 (1062)
T ss_pred eEEEEc--cCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEE
Confidence 555543 567766665421 12221111100 0122466777655443
Q ss_pred eeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCC--CEEEEEeCCCcEEEEecCCCCCC
Q 019847 251 GHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDG--LTVATAGADETIRFWEAFGPSGD 316 (335)
Q Consensus 251 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~dg~v~iw~~~~~~~~ 316 (335)
. .-...+.++|++-...+....-..+.+.-+.+-|++ ..|++...||.+.+|--+.....
T Consensus 248 i------~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~ 309 (1062)
T KOG1912|consen 248 I------TFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTE 309 (1062)
T ss_pred E------EeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCcc
Confidence 3 237889999999888888877666666667777764 67999999999999987664433
No 303
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.19 E-value=1.8e-07 Score=73.88 Aligned_cols=220 Identities=15% Similarity=0.104 Sum_probs=137.0
Q ss_pred CCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCC
Q 019847 35 GPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGH 114 (335)
Q Consensus 35 ~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 114 (335)
++.|..||..+++..-...+........+. ..++++.+++++.++.+..||..+|+.+..+.. ...+..... . .+.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~-~-~~~ 77 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPV-V-DGG 77 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEE-E-ETT
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceee-e-ccc
Confidence 678999999999887666653211222211 333677788888999999999999999887775 333222222 2 566
Q ss_pred EEEEeeCCCcEEEEecccCCeeeEEeecCC---CCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCC
Q 019847 115 ILTSGSKDKSIINHDVRVSNNVTSCIKAHS---GEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGG 191 (335)
Q Consensus 115 ~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 191 (335)
.++.++.++.+..+|..+++...+...... ...........+..++++..++.|..+|++++.. +.........
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~---~w~~~~~~~~ 154 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKL---LWKYPVGEPR 154 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEE---EEEEESSTT-
T ss_pred ccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcE---EEEeecCCCC
Confidence 677777888999999988887665322221 1122223333477888888899999999887543 3322222211
Q ss_pred ----------e-eEEEecCCCCcEEEEecCCCCCe-EEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecC
Q 019847 192 ----------V-KALAWSPHQVNVLATGGGREDGC-IKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGD 259 (335)
Q Consensus 192 ----------v-~~~~~~~~~~~~~~~~~g~~d~~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (335)
+ ..+.+. ++ .++++. .++. +.+ |+++++.+.... ....... ....+..++.. +.
T Consensus 155 ~~~~~~~~~~~~~~~~~~-~~-~v~~~~---~~g~~~~~-d~~tg~~~w~~~-~~~~~~~-~~~~~~~l~~~------~~ 220 (238)
T PF13360_consen 155 GSSPISSFSDINGSPVIS-DG-RVYVSS---GDGRVVAV-DLATGEKLWSKP-ISGIYSL-PSVDGGTLYVT------SS 220 (238)
T ss_dssp SS--EEEETTEEEEEECC-TT-EEEEEC---CTSSEEEE-ETTTTEEEEEEC-SS-ECEC-EECCCTEEEEE------ET
T ss_pred CCcceeeecccccceEEE-CC-EEEEEc---CCCeEEEE-ECCCCCEEEEec-CCCccCC-ceeeCCEEEEE------eC
Confidence 1 223333 34 566655 4665 555 999999765333 2333321 34566666655 46
Q ss_pred CCeEEEEECCCCceee
Q 019847 260 GNKLCLWKYPNMTKVG 275 (335)
Q Consensus 260 ~~~i~i~d~~~~~~~~ 275 (335)
++.+..||+.+++.+-
T Consensus 221 ~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 221 DGRLYALDLKTGKVVW 236 (238)
T ss_dssp TTEEEEEETTTTEEEE
T ss_pred CCEEEEEECCCCCEEe
Confidence 8999999999998753
No 304
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=99.14 E-value=5e-07 Score=71.31 Aligned_cols=218 Identities=14% Similarity=0.201 Sum_probs=144.5
Q ss_pred eeecC--CceEEEec--CCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEE-----CCCcEEEEeCC-Cce
Q 019847 22 IDWGR--NNVLAVAL--GPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGY-----MDSKLQLWDAE-TSK 91 (335)
Q Consensus 22 ~~~~~--~~~~~~~~--~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----~dg~i~iw~~~-~~~ 91 (335)
++.++ ...++.+. .....+||..+++....+.-+...----.-.|++||++|++.- ..|.|-|||.. +-+
T Consensus 10 ~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ 89 (305)
T PF07433_consen 10 VAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYR 89 (305)
T ss_pred eeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcE
Confidence 44455 34555542 4578899999998766544321111112357999999999863 46899999998 668
Q ss_pred eEeeecccccceeEeeecCCCCCEEEEee------------------CCCcEEEEecccCCeeeE-Ee--ecCCCCEEEE
Q 019847 92 LVRNLEGHHRRVATSSWNHWNGHILTSGS------------------KDKSIINHDVRVSNNVTS-CI--KAHSGEVCGL 150 (335)
Q Consensus 92 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~------------------~dg~i~~~d~~~~~~~~~-~~--~~~~~~i~~~ 150 (335)
.+.++..+.-....+.+.| ++..|+.+. .+-++...|..++..+.+ .+ ..|...|..+
T Consensus 90 ri~E~~s~GIGPHel~l~p-DG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHL 168 (305)
T PF07433_consen 90 RIGEFPSHGIGPHELLLMP-DGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHL 168 (305)
T ss_pred EEeEecCCCcChhhEEEcC-CCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeE
Confidence 8888988888888899999 887666652 223445555555554332 23 3367789999
Q ss_pred EeecCCCEEEEEeCCCe-------EEEEEccCCCccccee----eccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEE
Q 019847 151 KWSNEGNLLASGGDDNV-------VRIWERSKMSSSKSLH----RFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIW 219 (335)
Q Consensus 151 ~~~~~~~~l~~~~~dg~-------i~iwd~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~ 219 (335)
++.++|..++..-..|. +-+++... ....+. ....-.+.+-++++++++..+++++- ..+.+.+|
T Consensus 169 a~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsP--rGg~~~~~ 244 (305)
T PF07433_consen 169 AVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSP--RGGRVAVW 244 (305)
T ss_pred EecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECC--CCCEEEEE
Confidence 99999877666544432 34444222 111111 11234577899999999988888876 88999999
Q ss_pred ECCCCceEEEeecCCcEeEEEeCCCC
Q 019847 220 NVQKGTCIHGIDAKAQICGLEWNRHH 245 (335)
Q Consensus 220 d~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (335)
|..+++.+..... ..++.++..+++
T Consensus 245 d~~tg~~~~~~~l-~D~cGva~~~~~ 269 (305)
T PF07433_consen 245 DAATGRLLGSVPL-PDACGVAPTDDG 269 (305)
T ss_pred ECCCCCEeecccc-CceeeeeecCCc
Confidence 9999998766543 345666666666
No 305
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.13 E-value=1.1e-07 Score=74.97 Aligned_cols=217 Identities=12% Similarity=0.065 Sum_probs=129.3
Q ss_pred CCcEEEEeCCCceeEeeecccccceeEee--ecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCC
Q 019847 79 DSKLQLWDAETSKLVRNLEGHHRRVATSS--WNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEG 156 (335)
Q Consensus 79 dg~i~iw~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~ 156 (335)
+|.|..||..+|+.+...... ....... ..+ ++..+++++.++.+..||..+++...+.-. ...+.... ...+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~-~~~~~~~~~~~~-~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~--~~~~~~~~-~~~~ 76 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLG-PGIGGPVATAVP-DGGRVYVASGDGNLYALDAKTGKVLWRFDL--PGPISGAP-VVDG 76 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECS-SSCSSEEETEEE-ETTEEEEEETTSEEEEEETTTSEEEEEEEC--SSCGGSGE-EEET
T ss_pred CCEEEEEECCCCCEEEEEECC-CCCCCccceEEE-eCCEEEEEcCCCEEEEEECCCCCEEEEeec--ccccccee-eecc
Confidence 689999999999998887531 1122222 222 566777778999999999987776444332 22111111 2244
Q ss_pred CEEEEEeCCCeEEEEEccCCCcccceeeccCCC-CCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCc
Q 019847 157 NLLASGGDDNVVRIWERSKMSSSKSLHRFTDHC-GGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQ 235 (335)
Q Consensus 157 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~ 235 (335)
..+++++.++.++.+|..+++..-......... ...........+..+++.. .++.|..+|+++|+.+.......+
T Consensus 77 ~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~l~~~d~~tG~~~w~~~~~~~ 153 (238)
T PF13360_consen 77 GRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGT---SSGKLVALDPKTGKLLWKYPVGEP 153 (238)
T ss_dssp TEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEE---TCSEEEEEETTTTEEEEEEESSTT
T ss_pred cccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEe---ccCcEEEEecCCCcEEEEeecCCC
Confidence 566777788899999977765432211111011 1111122222254555554 589999999999999888765331
Q ss_pred E------------eEEEeCCCCceeeeeeeeeeecCCCe-EEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCC
Q 019847 236 I------------CGLEWNRHHKEILSGHGFSASGDGNK-LCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGAD 302 (335)
Q Consensus 236 ~------------~~~~~~~~~~~~~~~~~~~~~~~~~~-i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 302 (335)
. ..+.+. ++ .++.. ..++. +.+ |..+++.+.... ...+..+ ...++..|+.++.+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~-~~-~v~~~------~~~g~~~~~-d~~tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~ 221 (238)
T PF13360_consen 154 RGSSPISSFSDINGSPVIS-DG-RVYVS------SGDGRVVAV-DLATGEKLWSKP--ISGIYSL-PSVDGGTLYVTSSD 221 (238)
T ss_dssp -SS--EEEETTEEEEEECC-TT-EEEEE------CCTSSEEEE-ETTTTEEEEEEC--SS-ECEC-EECCCTEEEEEETT
T ss_pred CCCcceeeecccccceEEE-CC-EEEEE------cCCCeEEEE-ECCCCCEEEEec--CCCccCC-ceeeCCEEEEEeCC
Confidence 1 222222 33 33332 44664 555 999998664333 2223331 34566788888899
Q ss_pred CcEEEEecCCCCC
Q 019847 303 ETIRFWEAFGPSG 315 (335)
Q Consensus 303 g~v~iw~~~~~~~ 315 (335)
+.|..||+.+++.
T Consensus 222 ~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 222 GRLYALDLKTGKV 234 (238)
T ss_dssp TEEEEEETTTTEE
T ss_pred CEEEEEECCCCCE
Confidence 9999999998753
No 306
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.12 E-value=3e-09 Score=81.90 Aligned_cols=209 Identities=15% Similarity=0.279 Sum_probs=140.5
Q ss_pred cccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCe----eeEEeecCC------------CCEEEEEeecCC--CEEE
Q 019847 99 HHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNN----VTSCIKAHS------------GEVCGLKWSNEG--NLLA 160 (335)
Q Consensus 99 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~----~~~~~~~~~------------~~i~~~~~~~~~--~~l~ 160 (335)
....|+++.|.. .|.++++|...|.|.+|.-+.... ....+++|. ..|..+.|..++ ..++
T Consensus 25 ead~ItaVefd~-tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFL 103 (460)
T COG5170 25 EADKITAVEFDE-TGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFL 103 (460)
T ss_pred ccceeeEEEecc-ccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEE
Confidence 346789999988 899999999999999998654331 122244443 346778886643 4666
Q ss_pred EEeCCCeEEEEEccCCCc----------------c------cc-----------------eee-ccCCCCCeeEEEecCC
Q 019847 161 SGGDDNVVRIWERSKMSS----------------S------KS-----------------LHR-FTDHCGGVKALAWSPH 200 (335)
Q Consensus 161 ~~~~dg~i~iwd~~~~~~----------------~------~~-----------------~~~-~~~~~~~v~~~~~~~~ 200 (335)
..+.|.+|++|.+..... . +. .+. -..|.--+.++.|+.|
T Consensus 104 lstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD 183 (460)
T COG5170 104 LSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSD 183 (460)
T ss_pred EecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCc
Confidence 777899999998764310 0 00 000 1346666889999998
Q ss_pred CCcEEEEecCCCCCeEEEEECCCCce---EEEeecC------CcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCC
Q 019847 201 QVNVLATGGGREDGCIKIWNVQKGTC---IHGIDAK------AQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNM 271 (335)
Q Consensus 201 ~~~~~~~~~g~~d~~i~i~d~~~~~~---~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~ 271 (335)
...++.+ .|=.|.+|+++.... +..++.+ .-|++..|+|....+.. .++..|.|++-|++..
T Consensus 184 ~et~lSa----DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fm-----YSsSkG~Ikl~DlRq~ 254 (460)
T COG5170 184 KETLLSA----DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFM-----YSSSKGEIKLNDLRQS 254 (460)
T ss_pred hheeeec----cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEE-----EecCCCcEEehhhhhh
Confidence 8766654 688999999875322 2222222 24788899998765543 2367999999999843
Q ss_pred ce------eec----------ccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCC
Q 019847 272 TK------VGE----------LQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDED 318 (335)
Q Consensus 272 ~~------~~~----------~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~ 318 (335)
.+ +.. +.+-...|.++.|+++|+++++-+. -+|++||+...+...+
T Consensus 255 alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pik 316 (460)
T COG5170 255 ALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIK 316 (460)
T ss_pred hhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCce
Confidence 21 111 1122346888999999999987765 5899999988765543
No 307
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.11 E-value=8.2e-10 Score=94.28 Aligned_cols=208 Identities=16% Similarity=0.305 Sum_probs=153.5
Q ss_pred ccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEee-cCCCCEEEEEeecC--CCEEEEEeCCCeEEEEEccCC
Q 019847 100 HRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIK-AHSGEVCGLKWSNE--GNLLASGGDDNVVRIWERSKM 176 (335)
Q Consensus 100 ~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~-~~~~~i~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~ 176 (335)
.+++..+..+| .++-++.++.-| +.+.|+.......+.+. ...-.+-...|+|. -.+-++......-.+|++...
T Consensus 24 ~~~~~a~si~p-~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~s 101 (1081)
T KOG0309|consen 24 DGGFNAVSINP-SGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKS 101 (1081)
T ss_pred cCcccceeecc-ccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcC
Confidence 46777888888 788888887766 44566655443333332 12234667788873 334455555667789998877
Q ss_pred CcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCc-eEEEee-cCCcEeEEEeCCCCceeeeeeee
Q 019847 177 SSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGT-CIHGID-AKAQICGLEWNRHHKEILSGHGF 254 (335)
Q Consensus 177 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 254 (335)
.....-..+.+|...|+.+.|+|..+.++++++ .|-.+..||+++.. ++..+. -+.....+.|+.....+.+.
T Consensus 102 s~~aIef~lhghsraitd~n~~~q~pdVlatcs--vdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlas--- 176 (1081)
T KOG0309|consen 102 SSNAIEFVLHGHSRAITDINFNPQHPDVLATCS--VDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLAS--- 176 (1081)
T ss_pred CccceEEEEecCccceeccccCCCCCcceeecc--ccccceeeeccCCCcceeeeecccccCceeeecccCcchhhh---
Confidence 666666677889999999999999999999998 99999999998764 333333 35567788888776666554
Q ss_pred eeecCCCeEEEEECCCC-ceeecccCCCCceeEeEEcCC-CCEEEEEeCCCcEEEEecCCCCCCC
Q 019847 255 SASGDGNKLCLWKYPNM-TKVGELQSSNSRILDLSQSPD-GLTVATAGADETIRFWEAFGPSGDE 317 (335)
Q Consensus 255 ~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~v~iw~~~~~~~~~ 317 (335)
+..+.|.+||.+.+ .++..+++|...|+.+.|..- ...+.+.+.||+|++|+.+......
T Consensus 177 ---shg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~ 238 (1081)
T KOG0309|consen 177 ---SHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTES 238 (1081)
T ss_pred ---ccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccccc
Confidence 66899999999864 677888999999999998763 3467889999999999998765444
No 308
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.09 E-value=6e-10 Score=86.73 Aligned_cols=144 Identities=16% Similarity=0.174 Sum_probs=111.3
Q ss_pred eEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCc-----eeEeeecccccce
Q 019847 29 VLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETS-----KLVRNLEGHHRRV 103 (335)
Q Consensus 29 ~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-----~~~~~~~~~~~~v 103 (335)
-++++.+..|-+-|++++.... + ...+.|.++.|...++++..|+.+|.|..+|++.+ .+...+. |...|
T Consensus 227 hfs~G~sqqv~L~nvetg~~qs---f-~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssv 301 (425)
T KOG2695|consen 227 HFSVGLSQQVLLTNVETGHQQS---F-QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSV 301 (425)
T ss_pred eecccccceeEEEEeecccccc---c-ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcch
Confidence 4667888899999999986422 2 24677999999998999999999999999999864 3444444 88999
Q ss_pred eEeeecCCCCCEEEEeeCCCcEEEEecccCCe--eeEEeecCCCCEE--EEEeecCCCEEEEEeCCCeEEEEEccCCC
Q 019847 104 ATSSWNHWNGHILTSGSKDKSIINHDVRVSNN--VTSCIKAHSGEVC--GLKWSNEGNLLASGGDDNVVRIWERSKMS 177 (335)
Q Consensus 104 ~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~--~~~~~~~~~~~i~--~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 177 (335)
+++.....++..|++.+.+|.|++||++..+. -+..+.+|-..-. -+...+....+++++.|...+||.++.+.
T Consensus 302 tslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~gh 379 (425)
T KOG2695|consen 302 TSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGH 379 (425)
T ss_pred hhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCc
Confidence 99987766888999999999999999986544 2444566654322 23345667788889999999999988753
No 309
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.03 E-value=1.7e-08 Score=87.95 Aligned_cols=281 Identities=16% Similarity=0.234 Sum_probs=165.1
Q ss_pred CCCcccccceeeeecCC-ceEEEe-----cCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEE
Q 019847 11 PYLMEDYYSKVIDWGRN-NVLAVA-----LGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQL 84 (335)
Q Consensus 11 ~~~~~~~~~~~~~~~~~-~~~~~~-----~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 84 (335)
.++..+...+..+|+|. .+++++ ..|.|.||- ++|++..-.+.+-| +++++|+|..-.|+.|-.-|.+.+
T Consensus 10 E~~Dsdavsti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~h---atSLCWHpe~~vLa~gwe~g~~~v 85 (1416)
T KOG3617|consen 10 EFLDSDAVSTISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPVH---ATSLCWHPEEFVLAQGWEMGVSDV 85 (1416)
T ss_pred ecccccccccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccccccee---hhhhccChHHHHHhhccccceeEE
Confidence 34445666777899994 455543 468899884 67776555555555 567999999988999999999999
Q ss_pred EeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeee-EEeecCC--CC--EEEEEeecCCC--
Q 019847 85 WDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVT-SCIKAHS--GE--VCGLKWSNEGN-- 157 (335)
Q Consensus 85 w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~-~~~~~~~--~~--i~~~~~~~~~~-- 157 (335)
|...+.+.-.....|..+|..+.|++ +|..++++..-|.+.+|.....+.+. ..+..|. .. ..+...++++.
T Consensus 86 ~~~~~~e~htv~~th~a~i~~l~wS~-~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~ 164 (1416)
T KOG3617|consen 86 QKTNTTETHTVVETHPAPIQGLDWSH-DGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEK 164 (1416)
T ss_pred EecCCceeeeeccCCCCCceeEEecC-CCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHh
Confidence 99988887777778999999999999 99999999999999999987433221 1111222 22 23444455532
Q ss_pred ----EEEEEeCCCeEE-EEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec
Q 019847 158 ----LLASGGDDNVVR-IWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA 232 (335)
Q Consensus 158 ----~l~~~~~dg~i~-iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~ 232 (335)
..++.+.+..+- .++.+.... -.. ..|. =.|+|..+++++ .+|+|+..| ++|++....+.
T Consensus 165 ~~laKaaVtgDe~alD~~fnwk~~~a---~rs-~~ks-------gv~~g~~F~~~~---~~GtVyyvd-q~g~~~~V~k~ 229 (1416)
T KOG3617|consen 165 FKLAKAAVTGDESALDEPFNWKESLA---ERS-DEKS-------GVPKGTEFLFAG---KSGTVYYVD-QNGRQRTVHKL 229 (1416)
T ss_pred hhhhhhhccCchhhhcccccCccchh---hcc-cccc-------CCCCCcEEEEEc---CCceEEEEc-CCCcEEEEEEc
Confidence 223333333332 333221000 000 0011 135665555555 799999888 45666555544
Q ss_pred CCcEeEEEeCCCCceeeeee-------------e-----------eeeecCCCeEEEEECCC---CceeecccCCCCcee
Q 019847 233 KAQICGLEWNRHHKEILSGH-------------G-----------FSASGDGNKLCLWKYPN---MTKVGELQSSNSRIL 285 (335)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~-------------~-----------~~~~~~~~~i~i~d~~~---~~~~~~~~~~~~~i~ 285 (335)
.+. ..+-|.+....+.+-. + --.++..|.|..=.... ..+...+ .....++
T Consensus 230 dS~-vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~-e~ge~~~ 307 (1416)
T KOG3617|consen 230 DSE-VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGL-ELGEGIL 307 (1416)
T ss_pred cch-HHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcchhh-hcCCceE
Confidence 332 1122222211111110 0 00011112221111100 0000001 1234699
Q ss_pred EeEEcCCCCEEEEEeCCCcEEEEecCCC
Q 019847 286 DLSQSPDGLTVATAGADETIRFWEAFGP 313 (335)
Q Consensus 286 ~~~~~~~~~~l~~~~~dg~v~iw~~~~~ 313 (335)
+++++..+..|..|...|.+.+|.-.+.
T Consensus 308 c~cY~~~~~~l~agt~~gnv~~w~~v~~ 335 (1416)
T KOG3617|consen 308 CMCYGEKEIRLWAGTKEGNVTIWLDVNK 335 (1416)
T ss_pred EEEEeccceEEEecccCCcEEEeeecCc
Confidence 9999999999999999999999965543
No 310
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=99.01 E-value=8.5e-10 Score=59.75 Aligned_cols=38 Identities=34% Similarity=0.567 Sum_probs=36.0
Q ss_pred ceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEe
Q 019847 272 TKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWE 309 (335)
Q Consensus 272 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~ 309 (335)
+++.++.+|.+.|++++|+|++.+|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 56788999999999999999999999999999999997
No 311
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=3.2e-08 Score=80.06 Aligned_cols=245 Identities=14% Similarity=0.106 Sum_probs=166.6
Q ss_pred CCCCceEEEEcCCCCEEEEEECCCcEEEEeCCC---ceeEeeecccccceeEeeecCCCCCEEEEeeC-CCcEEEEeccc
Q 019847 57 EDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAET---SKLVRNLEGHHRRVATSSWNHWNGHILTSGSK-DKSIINHDVRV 132 (335)
Q Consensus 57 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~~~d~~~ 132 (335)
|.+.|+.+.- ...+++.+++.||.++.|.-.. -+.+..+..|...+.+++.+. ++.++.+.+. |..++++|+++
T Consensus 8 hrd~i~hv~~-tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~-dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 8 HRDVITHVFP-TKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSY-DGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred ccceeeeEee-ehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccc-cceeEeeccCcccceeEEEeec
Confidence 6677776644 3567999999999999997543 245566778888999999888 8999999777 99999999986
Q ss_pred CCee-eEEeecCCCCEEEEEeecC-C-CEEEEE-eCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEe
Q 019847 133 SNNV-TSCIKAHSGEVCGLKWSNE-G-NLLASG-GDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATG 208 (335)
Q Consensus 133 ~~~~-~~~~~~~~~~i~~~~~~~~-~-~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 208 (335)
-.-+ ...+....+.+..+ .++. . ..++++ -.+|.+.++|-.... .+....-.-|..+|.++.+.|.++..++..
T Consensus 86 ~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~-~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD 163 (558)
T KOG0882|consen 86 FDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDF-CQDGYFKKLHFSPVKKIRYNQAGDSAVSID 163 (558)
T ss_pred cchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCc-CccceecccccCceEEEEeeccccceeecc
Confidence 5432 11122223332222 1221 1 133333 457899999966432 233344455899999999999997655533
Q ss_pred cCCCCCeEEEEECCC------CceEEEe----------ecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCc
Q 019847 209 GGREDGCIKIWNVQK------GTCIHGI----------DAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMT 272 (335)
Q Consensus 209 ~g~~d~~i~i~d~~~------~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~ 272 (335)
..|.|..|..+. .+....+ +......++.|+|++..+.+- +.|..|++++.++++
T Consensus 164 ---~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl------~~DrkVR~F~~KtGk 234 (558)
T KOG0882|consen 164 ---ISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTL------NPDRKVRGFVFKTGK 234 (558)
T ss_pred ---ccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCccccc------CcccEEEEEEeccch
Confidence 689999999872 1121122 234568899999999998876 679999999999887
Q ss_pred eeecccC--------------------------------CCC-ceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCC
Q 019847 273 KVGELQS--------------------------------SNS-RILDLSQSPDGLTVATAGADETIRFWEAFGPSG 315 (335)
Q Consensus 273 ~~~~~~~--------------------------------~~~-~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~ 315 (335)
.++.+.. |.. .-+.+.|...+++|+-|+-=| |++.++.++..
T Consensus 235 lvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v 309 (558)
T KOG0882|consen 235 LVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTV 309 (558)
T ss_pred hhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeE
Confidence 7655421 111 234567888888888877543 67777776554
No 312
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=6.6e-07 Score=78.36 Aligned_cols=208 Identities=10% Similarity=0.136 Sum_probs=140.6
Q ss_pred EEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCC-----cEEEEecccCC-----
Q 019847 65 SWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDK-----SIINHDVRVSN----- 134 (335)
Q Consensus 65 ~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~~~d~~~~~----- 134 (335)
+|++.+..++.|+.+|.|.+.+- .-+.+..++.+...+...-|.-...++|++-+.|+ .+++|+++...
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 46788999999999999988873 34555778877777434444442557888877665 48999987431
Q ss_pred eee---EEee----cCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCC-cccceeeccCCCCCeeEEEecCCCCcEEE
Q 019847 135 NVT---SCIK----AHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMS-SSKSLHRFTDHCGGVKALAWSPHQVNVLA 206 (335)
Q Consensus 135 ~~~---~~~~----~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 206 (335)
.+. +... ....++.+++.+.+-+.+|+|-.+|.|..+.-+-.. .............+|+.+.+..++...+.
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF 188 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF 188 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence 122 1111 135678999999999999999999999998622110 11122223345678999999999887333
Q ss_pred EecCCCCCeEEEEECCCCce-EEEeec-CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeeccc-CCCCc
Q 019847 207 TGGGREDGCIKIWNVQKGTC-IHGIDA-KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQ-SSNSR 283 (335)
Q Consensus 207 ~~~g~~d~~i~i~d~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~ 283 (335)
++ ....|.+|.+....+ ...+.. +.+..|..+++....++++ .+..+.+|+.+...+-..+. +|...
T Consensus 189 v~---Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca-------~~e~l~fY~sd~~~~cfaf~~g~kk~ 258 (933)
T KOG2114|consen 189 VA---TTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICA-------GSEFLYFYDSDGRGPCFAFEVGEKKE 258 (933)
T ss_pred EE---ecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEe-------cCceEEEEcCCCcceeeeecCCCeEE
Confidence 33 367899999984442 333444 4578888888877745443 27889999988777666666 55543
No 313
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=6.4e-08 Score=83.78 Aligned_cols=183 Identities=15% Similarity=0.270 Sum_probs=132.8
Q ss_pred CCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeee
Q 019847 58 DDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVT 137 (335)
Q Consensus 58 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~ 137 (335)
.+.++|+++ .+++|+.|+.+|.|++++.+ +.. .....|... .. +|.++++|+.||+|.+..+.+.+...
T Consensus 39 ~D~is~~av--~~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~-~Gey~asCS~DGkv~I~sl~~~~~~~ 107 (846)
T KOG2066|consen 39 NDAISCCAV--HDKFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------IL-EGEYVASCSDDGKVVIGSLFTDDEIT 107 (846)
T ss_pred hhHHHHHHh--hcceeeeccccceEEEEecC-Ccc-ccccccccc------cc-CCceEEEecCCCcEEEeeccCCccce
Confidence 345677777 46789999999999999875 333 333334333 33 89999999999999999988776544
Q ss_pred EEeecCCCCEEEEEeecC-----CCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCC
Q 019847 138 SCIKAHSGEVCGLKWSNE-----GNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGRE 212 (335)
Q Consensus 138 ~~~~~~~~~i~~~~~~~~-----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~ 212 (335)
. .....++.+++++|+ .+.+++|+.-| +.++.-+-......+ ......++|.++.|.. .+++-+ .
T Consensus 108 ~--~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W~g---~lIAWa---n 177 (846)
T KOG2066|consen 108 Q--YDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKWRG---NLIAWA---N 177 (846)
T ss_pred e--EecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCccceEEEEecC---cEEEEe---c
Confidence 3 246788999999997 56899999888 777764433322223 3445678999999975 477766 4
Q ss_pred CCeEEEEECCCCceEEEeecCC-------cEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECC
Q 019847 213 DGCIKIWNVQKGTCIHGIDAKA-------QICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYP 269 (335)
Q Consensus 213 d~~i~i~d~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~ 269 (335)
|--|++||..+++.+..++.+. -...+.|.++...++ | -..+|+|..++
T Consensus 178 d~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI-G-------W~d~v~i~~I~ 233 (846)
T KOG2066|consen 178 DDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI-G-------WGDSVKICSIK 233 (846)
T ss_pred CCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEE-e-------cCCeEEEEEEe
Confidence 7779999999998888776432 245678887776554 3 36788888876
No 314
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.96 E-value=3.2e-08 Score=86.74 Aligned_cols=184 Identities=16% Similarity=0.254 Sum_probs=135.7
Q ss_pred cCCceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeeccccccee
Q 019847 25 GRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVA 104 (335)
Q Consensus 25 ~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~ 104 (335)
++..++.++-...+..+|+++.+..+...+.. ..|+-++ .+++++.+|...|+|.+-|.++.+.++++..|.+.|.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a--~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siS 221 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSA--SGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSIS 221 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccC--CceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeecccccee
Confidence 55678888888899999999988766555432 2344444 4788999999999999999999999999999999999
Q ss_pred EeeecCCCCCEEEEeeC---------CCcEEEEecccCCeeeEEeecCCCCEEEEEeecC-CCEEEEEeCCCeEEEEEcc
Q 019847 105 TSSWNHWNGHILTSGSK---------DKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNE-GNLLASGGDDNVVRIWERS 174 (335)
Q Consensus 105 ~~~~~~~~~~~l~~~~~---------dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~iwd~~ 174 (335)
.+.. .|++|++++. |..|+|||++..+.+.- +.-+.++ .-+.|.|. ...+++++..|...+-|..
T Consensus 222 DfDv---~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~P-I~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~ 296 (1118)
T KOG1275|consen 222 DFDV---QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSP-IQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTA 296 (1118)
T ss_pred eeec---cCCeEEEeecccccccccccchhhhhhhhhhhccCC-cccccCc-hhhhhcccccceEEEEecccceeecccc
Confidence 9888 7889998875 44689999997665322 2222222 44677773 4578888889999999943
Q ss_pred CCCcc-cceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEE
Q 019847 175 KMSSS-KSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWN 220 (335)
Q Consensus 175 ~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d 220 (335)
+.... ..+..+......+..++++++++. ++.+. .+|.|.+|.
T Consensus 297 ~lsNP~~~~~~v~p~~s~i~~fDiSsn~~a-lafgd--~~g~v~~wa 340 (1118)
T KOG1275|consen 297 TLSNPPAGVKMVNPNGSGISAFDISSNGDA-LAFGD--HEGHVNLWA 340 (1118)
T ss_pred ccCCCccceeEEccCCCcceeEEecCCCce-EEEec--ccCcEeeec
Confidence 32222 223334444556999999999964 44443 899999997
No 315
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.93 E-value=1.1e-05 Score=67.58 Aligned_cols=257 Identities=16% Similarity=0.183 Sum_probs=142.2
Q ss_pred cCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeeccc--------------
Q 019847 34 LGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGH-------------- 99 (335)
Q Consensus 34 ~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-------------- 99 (335)
..+.+.+||+++++..++... ...+....|+|+|+.+|... ++.|.+++..+++..+.-...
T Consensus 21 ~~~~y~i~d~~~~~~~~l~~~---~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvye 96 (353)
T PF00930_consen 21 FKGDYYIYDIETGEITPLTPP---PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYE 96 (353)
T ss_dssp EEEEEEEEETTTTEEEESS-E---ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHH
T ss_pred cceeEEEEecCCCceEECcCC---ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceecc
Confidence 346899999999876554432 56788999999999999986 678999998877544322211
Q ss_pred ---ccceeEeeecCCCCCEEEEeeCC-CcE-----------------------------------EEEecccCCeee-EE
Q 019847 100 ---HRRVATSSWNHWNGHILTSGSKD-KSI-----------------------------------INHDVRVSNNVT-SC 139 (335)
Q Consensus 100 ---~~~v~~~~~~~~~~~~l~~~~~d-g~i-----------------------------------~~~d~~~~~~~~-~~ 139 (335)
-+.-..+-|+| +++.|+....| ..+ .++|+.+++... ..
T Consensus 97 EEv~~~~~~~~WSp-d~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~ 175 (353)
T PF00930_consen 97 EEVFDRRSAVWWSP-DSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDP 175 (353)
T ss_dssp HHTSSSSBSEEE-T-TSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE--
T ss_pred ccccccccceEECC-CCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeee
Confidence 12235678999 77777654322 222 233443332211 11
Q ss_pred e---ecCCCCEEEEEeecCCCEEEEE--eCCC---eEEEEEccCCCcccceeeccCCCCC---eeEEEec-CCCCcEEEE
Q 019847 140 I---KAHSGEVCGLKWSNEGNLLASG--GDDN---VVRIWERSKMSSSKSLHRFTDHCGG---VKALAWS-PHQVNVLAT 207 (335)
Q Consensus 140 ~---~~~~~~i~~~~~~~~~~~l~~~--~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~---v~~~~~~-~~~~~~~~~ 207 (335)
. ......+..+.|.++++.|+.. +.+. .+.++|..++........ ..... .....+. +++..++..
T Consensus 176 ~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e--~~~~Wv~~~~~~~~~~~~~~~~l~~ 253 (353)
T PF00930_consen 176 PNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEE--TSDGWVDVYDPPHFLGPDGNEFLWI 253 (353)
T ss_dssp -HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEE--ESSSSSSSSSEEEE-TTTSSEEEEE
T ss_pred ccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEe--cCCcceeeecccccccCCCCEEEEE
Confidence 1 1233457788899988844433 3332 466667665433222211 12222 2355554 777777776
Q ss_pred ecCCCCC--eEEEEECCCCceEEEeecCCcEe-EEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCce
Q 019847 208 GGGREDG--CIKIWNVQKGTCIHGIDAKAQIC-GLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRI 284 (335)
Q Consensus 208 ~~g~~d~--~i~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i 284 (335)
.. .+| .|.+++...+.......+.-.|. -+.++++++.+.....- -......+..-++..+..+..+......-
T Consensus 254 s~--~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~-~~p~~r~lY~v~~~~~~~~~~LT~~~~~~ 330 (353)
T PF00930_consen 254 SE--RDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANG-DNPGERHLYRVSLDSGGEPKCLTCEDGDH 330 (353)
T ss_dssp EE--TTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESS-GGTTSBEEEEEETTETTEEEESSTTSSTT
T ss_pred EE--cCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecC-CCCCceEEEEEEeCCCCCeEeccCCCCCc
Confidence 65 566 46666766665443333444564 47788888776532100 00124456666666233444554443333
Q ss_pred eEeEEcCCCCEEEEEe
Q 019847 285 LDLSQSPDGLTVATAG 300 (335)
Q Consensus 285 ~~~~~~~~~~~l~~~~ 300 (335)
..+.|||++++++-..
T Consensus 331 ~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 331 YSASFSPDGKYYVDTY 346 (353)
T ss_dssp EEEEE-TTSSEEEEEE
T ss_pred eEEEECCCCCEEEEEE
Confidence 6899999999887543
No 316
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=6.9e-08 Score=83.61 Aligned_cols=186 Identities=15% Similarity=0.193 Sum_probs=131.6
Q ss_pred ccccceeeeecCCceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEe
Q 019847 15 EDYYSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVR 94 (335)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~ 94 (335)
....+.|++++...++.++.+|.|++++.+..- ...+ .|... ..+|.++++|+.||+|.|-.+-+.+...
T Consensus 38 ~~D~is~~av~~~~~~~GtH~g~v~~~~~~~~~-~~~~---~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~ 107 (846)
T KOG2066|consen 38 QNDAISCCAVHDKFFALGTHRGAVYLTTCQGNP-KTNF---DHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEIT 107 (846)
T ss_pred hhhHHHHHHhhcceeeeccccceEEEEecCCcc-cccc---ccccc------ccCCceEEEecCCCcEEEeeccCCccce
Confidence 344577788888888899999999999976542 1111 23332 6689999999999999999998888776
Q ss_pred eecccccceeEeeecCC----CCCEEEEeeCCCcEEEEecccCCee-eEEeecCCCCEEEEEeecCCCEEEEEeCCCeEE
Q 019847 95 NLEGHHRRVATSSWNHW----NGHILTSGSKDKSIINHDVRVSNNV-TSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVR 169 (335)
Q Consensus 95 ~~~~~~~~v~~~~~~~~----~~~~l~~~~~dg~i~~~d~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 169 (335)
.+. ...++.+++++|. ..+.+++|+.-| +.++.-+--+.. ...+....++|.++.|. |+++|-++.+| |+
T Consensus 108 ~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~ 182 (846)
T KOG2066|consen 108 QYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VK 182 (846)
T ss_pred eEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cE
Confidence 665 5578999999983 367899999998 777764322211 22356678999999997 67999988776 99
Q ss_pred EEEccCCCcccceeeccCC------CCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCC
Q 019847 170 IWERSKMSSSKSLHRFTDH------CGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQK 223 (335)
Q Consensus 170 iwd~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~ 223 (335)
+||+..... +..+... ......+.|.++. .++.| ...+|++..++.
T Consensus 183 vyd~~~~~~---l~~i~~p~~~~R~e~fpphl~W~~~~--~LVIG---W~d~v~i~~I~~ 234 (846)
T KOG2066|consen 183 VYDTPTRQR---LTNIPPPSQSVRPELFPPHLHWQDED--RLVIG---WGDSVKICSIKK 234 (846)
T ss_pred EEeccccce---eeccCCCCCCCCcccCCCceEecCCC--eEEEe---cCCeEEEEEEec
Confidence 999876433 2222211 1123467888876 34444 566788888873
No 317
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.91 E-value=8.3e-08 Score=84.28 Aligned_cols=180 Identities=20% Similarity=0.290 Sum_probs=135.1
Q ss_pred CCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEE
Q 019847 70 AKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCG 149 (335)
Q Consensus 70 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~ 149 (335)
+..++-|+-...+..+|+.+.+..+...-....++-++. +++.+++|...|+|.+-|.++.+ ....+..|.+.|..
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~-~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFE-TIHTFDAHSGSISD 222 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCc-eeeeeeccccceee
Confidence 456677777778899999988887776655556777776 78999999999999999998655 46778899999987
Q ss_pred EEeecCCCEEEEEeC---------CCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEE
Q 019847 150 LKWSNEGNLLASGGD---------DNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWN 220 (335)
Q Consensus 150 ~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d 220 (335)
+.. .|+.|++++. |..|++||+|......++.. +.++ .-+.|+|.-...+++++ ..|...+-|
T Consensus 223 fDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~---~~~P-~flrf~Psl~t~~~V~S--~sGq~q~vd 294 (1118)
T KOG1275|consen 223 FDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQF---PYGP-QFLRFHPSLTTRLAVTS--QSGQFQFVD 294 (1118)
T ss_pred eec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCccc---ccCc-hhhhhcccccceEEEEe--cccceeecc
Confidence 665 5789999875 45689999998665555443 3232 45778887666666666 789999998
Q ss_pred ---CCCC--ceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEE
Q 019847 221 ---VQKG--TCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWK 267 (335)
Q Consensus 221 ---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d 267 (335)
+.+. ...........+..+++++++..++.| ..+|.|.+|.
T Consensus 295 ~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafg------d~~g~v~~wa 340 (1118)
T KOG1275|consen 295 TATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFG------DHEGHVNLWA 340 (1118)
T ss_pred ccccCCCccceeEEccCCCcceeEEecCCCceEEEe------cccCcEeeec
Confidence 3332 112222334559999999999999988 6699999997
No 318
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.91 E-value=6.8e-06 Score=71.80 Aligned_cols=279 Identities=14% Similarity=0.096 Sum_probs=159.2
Q ss_pred CCceEEEecCCeEEEEEecCCceeeEEeecCC----CCCce--EEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeeccc
Q 019847 26 RNNVLAVALGPVLFLWKWENGKVKKLLQVPGE----DDYPT--SVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGH 99 (335)
Q Consensus 26 ~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~----~~~v~--~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 99 (335)
++.+++++.++.++-.|..+++..-....... ...+. .+... ++..++.++.+|.|.-+|.++|+.+..+...
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 46677777889999999999987554443221 00010 11111 2267888889999999999999998877643
Q ss_pred ccc-----e-eEeeecCCCCCEEEEee---------CCCcEEEEecccCCeeeEEeecCCC-------------------
Q 019847 100 HRR-----V-ATSSWNHWNGHILTSGS---------KDKSIINHDVRVSNNVTSCIKAHSG------------------- 145 (335)
Q Consensus 100 ~~~-----v-~~~~~~~~~~~~l~~~~---------~dg~i~~~d~~~~~~~~~~~~~~~~------------------- 145 (335)
... + ....+ .+..++.++ .+|.+..+|..+++..-+.......
T Consensus 140 ~~~~~~~~i~ssP~v---~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ 216 (488)
T cd00216 140 DQVPPGYTMTGAPTI---VKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGG 216 (488)
T ss_pred CCcCcceEecCCCEE---ECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCC
Confidence 321 1 11122 224455554 3678899999887765443221110
Q ss_pred CE-EEEEeecCCCEEEEEeCCC------------------eEEEEEccCCCcccceeeccCCC--------CCe-eEEEe
Q 019847 146 EV-CGLKWSNEGNLLASGGDDN------------------VVRIWERSKMSSSKSLHRFTDHC--------GGV-KALAW 197 (335)
Q Consensus 146 ~i-~~~~~~~~~~~l~~~~~dg------------------~i~iwd~~~~~~~~~~~~~~~~~--------~~v-~~~~~ 197 (335)
.+ ...++.+.+..++.++.++ .|.-+|.++++..-..+. ..+. .++ ..+.
T Consensus 217 ~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~-~~~~~~~~~~~s~p~~~~~~- 294 (488)
T cd00216 217 TSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQT-TPHDLWDYDGPNQPSLADIK- 294 (488)
T ss_pred CccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeC-CCCCCcccccCCCCeEEecc-
Confidence 01 1234445566777777665 688888776543222111 1111 111 0110
Q ss_pred cCCCC--cEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeee-e-----------eeecCCCeE
Q 019847 198 SPHQV--NVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHG-F-----------SASGDGNKL 263 (335)
Q Consensus 198 ~~~~~--~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----------~~~~~~~~i 263 (335)
.-++. .++..++ .+|.+...|.++|+.+-..+... ..+..+| ..+..+.. . .....+|.+
T Consensus 295 ~~~g~~~~~V~~g~--~~G~l~ald~~tG~~~W~~~~~~--~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l 368 (488)
T cd00216 295 PKDGKPVPAIVHAP--KNGFFYVLDRTTGKLISARPEVE--QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGL 368 (488)
T ss_pred ccCCCeeEEEEEEC--CCceEEEEECCCCcEeeEeEeec--cccccCC--ceEEEccccccccCcccccCCCCCCCceEE
Confidence 01222 2455544 79999999999999987765321 1233344 22222100 0 011346888
Q ss_pred EEEECCCCceeecccCCC--------Cce--eEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCC
Q 019847 264 CLWKYPNMTKVGELQSSN--------SRI--LDLSQSPDGLTVATAGADETIRFWEAFGPSGDED 318 (335)
Q Consensus 264 ~i~d~~~~~~~~~~~~~~--------~~i--~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~ 318 (335)
.-.|..+++.+-+..... .+. ..+.. .+..|+.++.||.++.+|..+++..-+
T Consensus 369 ~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~l~ald~~tG~~lW~ 431 (488)
T cd00216 369 AALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGYFRAFDATTGKELWK 431 (488)
T ss_pred EEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCeEEEEECCCCceeeE
Confidence 899999998876654321 111 11222 456888899999999999988876543
No 319
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.90 E-value=1.5e-06 Score=79.05 Aligned_cols=204 Identities=16% Similarity=0.265 Sum_probs=135.7
Q ss_pred CCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEec----ccC
Q 019847 58 DDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDV----RVS 133 (335)
Q Consensus 58 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~----~~~ 133 (335)
...|.++.|..+++.++.+...|.|.+-|.++.... ....-...|.+++|+| +...++..+..+++.+-+- -..
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~-Dee~l~liT~~~tll~mT~~f~~i~E 145 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSP-DEELLALITGRQTLLFMTKDFEPIAE 145 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecC-CCcEEEEEeCCcEEEEEeccccchhc
Confidence 468999999999999999999999999998876533 2333567899999999 9999999888888776543 101
Q ss_pred Cee------------------eEEeec---------------------CCCCEEEEEeecCCCEEEEE-----eCCCeEE
Q 019847 134 NNV------------------TSCIKA---------------------HSGEVCGLKWSNEGNLLASG-----GDDNVVR 169 (335)
Q Consensus 134 ~~~------------------~~~~~~---------------------~~~~i~~~~~~~~~~~l~~~-----~~dg~i~ 169 (335)
+++ ...+.+ ....=+++.|--||+++|+. .....|+
T Consensus 146 ~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rkir 225 (1265)
T KOG1920|consen 146 KPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIR 225 (1265)
T ss_pred cccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEE
Confidence 100 001110 01112358999999999984 2237899
Q ss_pred EEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEE----eecCC-cEeEEEeCCC
Q 019847 170 IWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHG----IDAKA-QICGLEWNRH 244 (335)
Q Consensus 170 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~----~~~~~-~~~~~~~~~~ 244 (335)
+||-+ +. .-..-....+.-.+++|-|.|..+.+...-..|+.|.+|. ++|-.-.. ++... ++..++|+.+
T Consensus 226 V~drE-g~---Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffE-rNGL~hg~f~l~~p~de~~ve~L~Wns~ 300 (1265)
T KOG1920|consen 226 VYDRE-GA---LNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFE-RNGLRHGEFVLPFPLDEKEVEELAWNSN 300 (1265)
T ss_pred Eeccc-ch---hhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEe-cCCccccccccCCcccccchheeeecCC
Confidence 99965 11 1111111223345799999997776666544677899997 44433332 22333 4899999999
Q ss_pred CceeeeeeeeeeecCCCeEEEEECCCC
Q 019847 245 HKEILSGHGFSASGDGNKLCLWKYPNM 271 (335)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~i~i~d~~~~ 271 (335)
+..+++-. .......|++|-..+.
T Consensus 301 sdiLAv~~---~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 301 SDILAVVT---SNLENSLVQLWTTGNY 324 (1265)
T ss_pred CCceeeee---cccccceEEEEEecCe
Confidence 99998732 1234555999988764
No 320
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.89 E-value=1.3e-08 Score=55.00 Aligned_cols=37 Identities=35% Similarity=0.865 Sum_probs=34.8
Q ss_pred eeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEE
Q 019847 136 VTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWE 172 (335)
Q Consensus 136 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd 172 (335)
+...+.+|.+.|++++|+|++++|++++.|+.|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 4677889999999999999999999999999999997
No 321
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.89 E-value=3.5e-06 Score=72.92 Aligned_cols=217 Identities=10% Similarity=0.030 Sum_probs=127.1
Q ss_pred CCeEEEEEecCCceeeEEeecCCCCCceEEEEc--CCCCEEEEEE------------------CCCcEEEEeCCCceeEe
Q 019847 35 GPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWS--HDAKTLAVGY------------------MDSKLQLWDAETSKLVR 94 (335)
Q Consensus 35 ~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~------------------~dg~i~iw~~~~~~~~~ 94 (335)
+..|-..+++.-+..++..++. ...+..++|- |+..|+++++ ..+.+.+.|.++.+...
T Consensus 151 n~Rvari~l~~~~~~~i~~iPn-~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~ 229 (635)
T PRK02888 151 NTRVARIRLDVMKCDKITELPN-VQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDAETMEVAW 229 (635)
T ss_pred CcceEEEECccEeeceeEeCCC-ccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEEEECccceEEE
Confidence 4466666666666666665543 2223333332 3333433332 24567777877777766
Q ss_pred eecccccceeEeeecCCCCCEEEEeeCC----CcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEE
Q 019847 95 NLEGHHRRVATSSWNHWNGHILTSGSKD----KSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRI 170 (335)
Q Consensus 95 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 170 (335)
++... .....+.+++ ++.++++.+.+ .++...+...... ...+. -..+ -++.++|++... .++.|.+
T Consensus 230 qV~Vd-gnpd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d~-~vvfn--i~~i--ea~vkdGK~~~V--~gn~V~V 300 (635)
T PRK02888 230 QVMVD-GNLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERDW-VVVFN--IARI--EEAVKAGKFKTI--GGSKVPV 300 (635)
T ss_pred EEEeC-CCcccceECC-CCCEEEEeccCcccCcceeeeccccCce-EEEEc--hHHH--HHhhhCCCEEEE--CCCEEEE
Confidence 66533 3556778888 78877777532 1233322221111 00000 0000 023456776665 3678999
Q ss_pred EEccCCC--cccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCce------------EEEeecCCcE
Q 019847 171 WERSKMS--SSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTC------------IHGIDAKAQI 236 (335)
Q Consensus 171 wd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~------------~~~~~~~~~~ 236 (335)
.|.++.. ....+..+ .-......+.++|||+++++++. .+..+.++|+++.+. +.+.+.....
T Consensus 301 ID~~t~~~~~~~v~~yI-PVGKsPHGV~vSPDGkylyVank--lS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGP 377 (635)
T PRK02888 301 VDGRKAANAGSALTRYV-PVPKNPHGVNTSPDGKYFIANGK--LSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGP 377 (635)
T ss_pred EECCccccCCcceEEEE-ECCCCccceEECCCCCEEEEeCC--CCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCc
Confidence 9977510 01222222 23455778999999999999876 899999999988653 4445555556
Q ss_pred eEEEeCCCCceeeeeeeeeeecCCCeEEEEECCC
Q 019847 237 CGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPN 270 (335)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~ 270 (335)
...+|+++|....+- --|..|..|++.+
T Consensus 378 LHTaFDg~G~aytsl------f~dsqv~kwn~~~ 405 (635)
T PRK02888 378 LHTAFDGRGNAYTTL------FLDSQIVKWNIEA 405 (635)
T ss_pred ceEEECCCCCEEEeE------eecceeEEEehHH
Confidence 678899998744433 3488999999876
No 322
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.89 E-value=3.9e-06 Score=66.40 Aligned_cols=211 Identities=13% Similarity=0.170 Sum_probs=139.1
Q ss_pred ceeEeeecCCCCCEEEEeeCCCc-EEEEecccCCeeeEEeecCCCCE--EEEEeecCCCEEEEEeC-----CCeEEEEEc
Q 019847 102 RVATSSWNHWNGHILTSGSKDKS-IINHDVRVSNNVTSCIKAHSGEV--CGLKWSNEGNLLASGGD-----DNVVRIWER 173 (335)
Q Consensus 102 ~v~~~~~~~~~~~~l~~~~~dg~-i~~~d~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~l~~~~~-----dg~i~iwd~ 173 (335)
....++.+|.....++.+-.-|+ ..+||.+++..... +....+.- -.-.|++||++|++.-. .|.|-|||.
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~-~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQR-LWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDA 84 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeE-EcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEEC
Confidence 34467777867777777777774 67899987765433 32222221 13679999999998643 478999998
Q ss_pred cCCCcccceeeccCCCCCeeEEEecCCCCcEEEEec---------------CCCCCeEEEEECCCCceEEEeec-----C
Q 019847 174 SKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGG---------------GREDGCIKIWNVQKGTCIHGIDA-----K 233 (335)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---------------g~~d~~i~i~d~~~~~~~~~~~~-----~ 233 (335)
.. ..+.+..+..+.-....+.+.||++.|++.-+ .+++-++.+.|..+|+.+..... .
T Consensus 85 ~~--~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~ 162 (305)
T PF07433_consen 85 AR--GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQ 162 (305)
T ss_pred cC--CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccc
Confidence 73 35567777777666778999999977777654 22445677788889998877543 3
Q ss_pred CcEeEEEeCCCCceeeeeeeeeeecCC--CeEEEEECCCCceeecc-------cCCCCceeEeEEcCCCCEEEEE-eCCC
Q 019847 234 AQICGLEWNRHHKEILSGHGFSASGDG--NKLCLWKYPNMTKVGEL-------QSSNSRILDLSQSPDGLTVATA-GADE 303 (335)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~-~~dg 303 (335)
..+..+++.++|..++.... -.-..+ --+.+++. ++.+..+ ..-.+.+-+|++++++.++++. -.-|
T Consensus 163 lSiRHLa~~~~G~V~~a~Q~-qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg 239 (305)
T PF07433_consen 163 LSIRHLAVDGDGTVAFAMQY-QGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGG 239 (305)
T ss_pred cceeeEEecCCCcEEEEEec-CCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCC
Confidence 36899999999887665432 100011 12333332 2222222 2234578999999999877555 4678
Q ss_pred cEEEEecCCCCCCCC
Q 019847 304 TIRFWEAFGPSGDED 318 (335)
Q Consensus 304 ~v~iw~~~~~~~~~~ 318 (335)
.+.+||..++.....
T Consensus 240 ~~~~~d~~tg~~~~~ 254 (305)
T PF07433_consen 240 RVAVWDAATGRLLGS 254 (305)
T ss_pred EEEEEECCCCCEeec
Confidence 899999988765543
No 323
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.89 E-value=1.2e-05 Score=64.40 Aligned_cols=235 Identities=14% Similarity=0.140 Sum_probs=149.5
Q ss_pred eEEEEEecCCceeeEEeecCC-C----CCceEEEEcCCCCEEEEEE--CCCcEEEEeCCCceeEeeecccccceeEeeec
Q 019847 37 VLFLWKWENGKVKKLLQVPGE-D----DYPTSVSWSHDAKTLAVGY--MDSKLQLWDAETSKLVRNLEGHHRRVATSSWN 109 (335)
Q Consensus 37 ~i~vw~~~~~~~~~~~~~~~~-~----~~v~~~~~~~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~ 109 (335)
.|.+||..+-.....+.++.- . ......+++.|++++++.. -.-+|.|.|+..++.+.++.. .++.. .|
T Consensus 68 vv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~-PGC~~--iy- 143 (342)
T PF06433_consen 68 VVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT-PGCWL--IY- 143 (342)
T ss_dssp EEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG-TSEEE--EE-
T ss_pred EEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecC-CCEEE--EE-
Confidence 799999999988777777652 1 2335578899999988864 345799999999999887763 22222 22
Q ss_pred CCCCCEEEEeeCCCcEEEEecccCCeeeEEe----ecCCCCE-EEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceee
Q 019847 110 HWNGHILTSGSKDKSIINHDVRVSNNVTSCI----KAHSGEV-CGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHR 184 (335)
Q Consensus 110 ~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~----~~~~~~i-~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 184 (335)
|..+.-|.+-+.||.+.-..+....+..+.. .....++ ..-++...+..++.-+.+|.|+--|+.... .+....
T Consensus 144 P~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~-~~~~~~ 222 (342)
T PF06433_consen 144 PSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDS-AKFGKP 222 (342)
T ss_dssp EEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSS-EEEEEE
T ss_pred ecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCc-ccccCc
Confidence 3345678899999999999998554433221 1112222 233344455566667889999998887543 122222
Q ss_pred ccC----------CCCCeeEEEecCCCCcEEEEec-C----CCC--CeEEEEECCCCceEEEeecCCcEeEEEeCCCCce
Q 019847 185 FTD----------HCGGVKALAWSPHQVNVLATGG-G----RED--GCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKE 247 (335)
Q Consensus 185 ~~~----------~~~~v~~~~~~~~~~~~~~~~~-g----~~d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (335)
+.- -.+.-.-+++++....|++.-. | ..| ..|.++|+.+++.+..++...++.++..+.+.+=
T Consensus 223 ~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P 302 (342)
T PF06433_consen 223 WSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKP 302 (342)
T ss_dssp EESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-
T ss_pred ccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCc
Confidence 211 1223345777776655555421 0 011 2588889999999999998888999999998875
Q ss_pred eeeeeeeeeecCCCeEEEEECCCCceeecccCC
Q 019847 248 ILSGHGFSASGDGNKLCLWKYPNMTKVGELQSS 280 (335)
Q Consensus 248 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~ 280 (335)
++.+ ....++.+.+||..+++++.++..-
T Consensus 303 ~L~~----~~~~~~~l~v~D~~tGk~~~~~~~l 331 (342)
T PF06433_consen 303 LLYA----LSAGDGTLDVYDAATGKLVRSIEQL 331 (342)
T ss_dssp EEEE----EETTTTEEEEEETTT--EEEEE---
T ss_pred EEEE----EcCCCCeEEEEeCcCCcEEeehhcc
Confidence 5433 2256899999999999999887643
No 324
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.87 E-value=5.5e-06 Score=64.53 Aligned_cols=196 Identities=14% Similarity=0.192 Sum_probs=114.9
Q ss_pred EEeecCCCCCceEEEEcCCCC-EEEEEECCCcEEEEeCCCceeEeeeccc-ccceeEeeecCCCCCEEEEeeCCCcEEEE
Q 019847 51 LLQVPGEDDYPTSVSWSHDAK-TLAVGYMDSKLQLWDAETSKLVRNLEGH-HRRVATSSWNHWNGHILTSGSKDKSIINH 128 (335)
Q Consensus 51 ~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~i~~~ 128 (335)
...+++-...+..++|+|+.+ ++++....+.|..++. +|+.++.+.-. .+..-.+++.. ++.++++.-.++.+.++
T Consensus 14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er~~~L~~~ 91 (248)
T PF06977_consen 14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLG-NGRYVLSEERDQRLYIF 91 (248)
T ss_dssp EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-S-TTEEEEEETTTTEEEEE
T ss_pred eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEEC-CCEEEEEEcCCCcEEEE
Confidence 345666667799999999766 4555667788888886 47887776533 35577788875 66666666678999999
Q ss_pred ecccCCee-----eEEe-----ecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccce--------eeccCCCC
Q 019847 129 DVRVSNNV-----TSCI-----KAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSL--------HRFTDHCG 190 (335)
Q Consensus 129 d~~~~~~~-----~~~~-----~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--------~~~~~~~~ 190 (335)
++...... ...+ ..+...+-.++|+|.++.|+.+-+..-..+|.++.......+ ........
T Consensus 92 ~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (248)
T PF06977_consen 92 TIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVR 171 (248)
T ss_dssp EE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS
T ss_pred EEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceec
Confidence 98432211 1111 124456899999998777777776666677776541100011 11112334
Q ss_pred CeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCC----------cEeEEEeCCCCceeeee
Q 019847 191 GVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKA----------QICGLEWNRHHKEILSG 251 (335)
Q Consensus 191 ~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~ 251 (335)
.+.++.++|....+++.+. .+..|..+| .+|+.+..+.... ..-.++++++|...+++
T Consensus 172 d~S~l~~~p~t~~lliLS~--es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 172 DLSGLSYDPRTGHLLILSD--ESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS 239 (248)
T ss_dssp ---EEEEETTTTEEEEEET--TTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred cccceEEcCCCCeEEEEEC--CCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence 5789999999888888876 899999999 6788877665432 57889999999776664
No 325
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.85 E-value=4.7e-06 Score=75.92 Aligned_cols=206 Identities=9% Similarity=0.149 Sum_probs=136.8
Q ss_pred ccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEcc----C
Q 019847 100 HRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERS----K 175 (335)
Q Consensus 100 ~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~----~ 175 (335)
...|.++.|.. +.+.++.+...|.|.+-|..+.. ......-...|.+++|+||+..++..+.++++.+-+-. .
T Consensus 68 d~~i~s~~fl~-d~~~i~v~~~~G~iilvd~et~~--~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~ 144 (1265)
T KOG1920|consen 68 DDEIVSVQFLA-DTNSICVITALGDIILVDPETLE--LEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIA 144 (1265)
T ss_pred CcceEEEEEec-ccceEEEEecCCcEEEEcccccc--eeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchh
Confidence 35899999998 88889999999999999877544 34444567889999999999999999988887765421 0
Q ss_pred CCc----------------ccceeeccC---------------------CCCCeeEEEecCCCCcEEEEecC-CCC-CeE
Q 019847 176 MSS----------------SKSLHRFTD---------------------HCGGVKALAWSPHQVNVLATGGG-RED-GCI 216 (335)
Q Consensus 176 ~~~----------------~~~~~~~~~---------------------~~~~v~~~~~~~~~~~~~~~~~g-~~d-~~i 216 (335)
... ++.-..+.+ ..+.=+.++|--||++++++.-. ..+ +.|
T Consensus 145 E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rki 224 (1265)
T KOG1920|consen 145 EKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKI 224 (1265)
T ss_pred ccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeE
Confidence 000 000001111 01112358999999765553210 023 799
Q ss_pred EEEECCCCceEEEee-cCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCc---eeecccCCCCceeEeEEcCC
Q 019847 217 KIWNVQKGTCIHGID-AKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMT---KVGELQSSNSRILDLSQSPD 292 (335)
Q Consensus 217 ~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~---~~~~~~~~~~~i~~~~~~~~ 292 (335)
++||-+ |..-..-+ ....-.+++|-|.|..+++-. ..++++.|.+|.-+..+ ....+.....++..++|+.+
T Consensus 225 rV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq---~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~ 300 (1265)
T KOG1920|consen 225 RVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQ---CKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSN 300 (1265)
T ss_pred EEeccc-chhhcccCcccccccceeecCCCCeEeeee---ecCCCCcEEEEecCCccccccccCCcccccchheeeecCC
Confidence 999976 54433222 234567899999999887743 33567789999854322 22223333345899999999
Q ss_pred CCEEEE---EeCCCcEEEEecCC
Q 019847 293 GLTVAT---AGADETIRFWEAFG 312 (335)
Q Consensus 293 ~~~l~~---~~~dg~v~iw~~~~ 312 (335)
+..|++ ......|++|-+.+
T Consensus 301 sdiLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 301 SDILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred CCceeeeecccccceEEEEEecC
Confidence 999988 55555699998765
No 326
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.84 E-value=1.7e-05 Score=60.24 Aligned_cols=140 Identities=12% Similarity=0.061 Sum_probs=91.0
Q ss_pred CceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEe
Q 019847 27 NNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATS 106 (335)
Q Consensus 27 ~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~ 106 (335)
..++.++..+.+.--|..+|++.-...+. ..|.+-+.- -|++++.|+..|.+++.+.++|+....+.... .|.+-
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~ilg---~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~-~vk~~ 98 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAILG---VRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILE-TVKVR 98 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhhC---ceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehh-hhccc
Confidence 45666777888999999999876554432 233333332 57789999999999999999998888776433 33322
Q ss_pred -eecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEc
Q 019847 107 -SWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWER 173 (335)
Q Consensus 107 -~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 173 (335)
...+ ++.++..|+.|++.+..|.++...+.+. +-..+...+-+..|-...|..+...|.+.--..
T Consensus 99 a~~d~-~~glIycgshd~~~yalD~~~~~cVyks-kcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~ 164 (354)
T KOG4649|consen 99 AQCDF-DGGLIYCGSHDGNFYALDPKTYGCVYKS-KCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTK 164 (354)
T ss_pred eEEcC-CCceEEEecCCCcEEEecccccceEEec-ccCCceeccceecCCCceEEEEeccceEEEEcc
Confidence 2334 8999999999999999999977765542 212222233344552333444445565544443
No 327
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.81 E-value=3.9e-06 Score=72.12 Aligned_cols=289 Identities=15% Similarity=0.187 Sum_probs=163.7
Q ss_pred CCcccccceeeeecCCceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCce
Q 019847 12 YLMEDYYSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSK 91 (335)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 91 (335)
..+.....+|++-..+.+..+++.|.+++|+-..+++.. ++..+....+..+..+++..++|+|+..|.|.++-++.+.
T Consensus 31 ~~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~-~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~ 109 (726)
T KOG3621|consen 31 FFPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRK-LKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKEL 109 (726)
T ss_pred cCcceEEEEEeecCCceEEEecccceEEEEecCchhhhc-ccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccC
Confidence 334566778888888889999999999999988877543 3333445566777889999999999999999999887643
Q ss_pred eEe-----ee-cccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCC---eeeEEeecCCCCEEEEEeecCCCEEEEE
Q 019847 92 LVR-----NL-EGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSN---NVTSCIKAHSGEVCGLKWSNEGNLLASG 162 (335)
Q Consensus 92 ~~~-----~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 162 (335)
+.. .. +.|...|++++|++ ++..+++|...|.|..-.+.... ...+.+....+.|..+.+.. +.+|++
T Consensus 110 p~~~~~~t~~d~~~~~rVTal~Ws~-~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q-~~LLVS- 186 (726)
T KOG3621|consen 110 PRDLDYVTPCDKSHKCRVTALEWSK-NGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ-SYLLVS- 186 (726)
T ss_pred CCcceeeccccccCCceEEEEEecc-cccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc-ceehHh-
Confidence 211 11 23778999999999 99999999999999988887521 11233344567777777653 333333
Q ss_pred eCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCC----CCcEEEEecCCCCCeEEEEECC-CCceEEEeecC----
Q 019847 163 GDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPH----QVNVLATGGGREDGCIKIWNVQ-KGTCIHGIDAK---- 233 (335)
Q Consensus 163 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~~~~~~g~~d~~i~i~d~~-~~~~~~~~~~~---- 233 (335)
+.- ...+++.+... .+.+..-....-.-...+|-|. .+-.+.++ .-..|+|... .|+.+.+....
T Consensus 187 tl~-r~~Lc~tE~et-i~QIG~k~R~~~~~~GACF~~g~~~~q~~~Iyca----RPG~RlWead~~G~V~~Thqfk~ala 260 (726)
T KOG3621|consen 187 TLT-RCILCQTEAET-ITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCA----RPGLRLWEADFAGEVIKTHQFKDALA 260 (726)
T ss_pred hhh-hhheeecchhH-HHHhcCCCcCCccccceEEeeccccCCCceEEEe----cCCCceEEeecceeEEEeeehhhhhc
Confidence 322 23445544322 1112111111111234455554 33344443 3446777654 24544444311
Q ss_pred ---Cc---EeEEEeCCCCceeeeee-------------eeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCC
Q 019847 234 ---AQ---ICGLEWNRHHKEILSGH-------------GFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGL 294 (335)
Q Consensus 234 ---~~---~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~ 294 (335)
.+ +.+.. +|+...+..+. .+.-+-.+-.|+|+|..+.+.+.-... ...|.+++- .++
T Consensus 261 ~~p~p~i~~~s~e-sp~~~~~~~~~q~ls~~k~~~l~~~~vLa~te~Giyv~d~~~~~v~l~se~-~~DI~dVs~--~~n 336 (726)
T KOG3621|consen 261 RPPAPEIPIRSLE-SPNQRSLPSGTQHLSLSKSSTLHSDRVLAWTEVGIYVFDSNNSQVYLWSEG-GHDILDVSH--CGN 336 (726)
T ss_pred cCCCCcccCCCcC-CccccCCCCCccccccceeEEeecceEEEeecceEEEEEeccceEEEeecC-CCceeEEee--cCc
Confidence 11 11111 22221111110 000011233478888766555433322 233555544 344
Q ss_pred EEEEEeCCCcEEEEecCCCC
Q 019847 295 TVATAGADETIRFWEAFGPS 314 (335)
Q Consensus 295 ~l~~~~~dg~v~iw~~~~~~ 314 (335)
-|+.-..|+.+++..+...+
T Consensus 337 eiFvL~~d~~l~~~sv~s~q 356 (726)
T KOG3621|consen 337 EIFVLNLDRGLKVESVASRQ 356 (726)
T ss_pred eEEEEecCCceeEEEeehhH
Confidence 55556667777777666543
No 328
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=5e-06 Score=73.06 Aligned_cols=204 Identities=9% Similarity=0.082 Sum_probs=135.9
Q ss_pred cceeeeecCCceEEEecCCeEEEEEecCCceeeEEeecCCCCC-ceEEEEcCCCCEEEEEECCC-----cEEEEeCCCc-
Q 019847 18 YSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDY-PTSVSWSHDAKTLAVGYMDS-----KLQLWDAETS- 90 (335)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~dg-----~i~iw~~~~~- 90 (335)
.+.|++-+.+.++.++.+|.|.+.+-.- + ....+..+... |..+-...+..+|++.+.|+ .++||+++.-
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln~s~-~--~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~ 103 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILNSSF-Q--LIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD 103 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEecccc-e--eeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence 6777777778888899999998887322 2 12334455555 55554444556888877654 4899998643
Q ss_pred -----eeE---eeec----ccccceeEeeecCCCCCEEEEeeCCCcEEEEecc---cCCeeeEEeecCCCCEEEEEeecC
Q 019847 91 -----KLV---RNLE----GHHRRVATSSWNHWNGHILTSGSKDKSIINHDVR---VSNNVTSCIKAHSGEVCGLKWSNE 155 (335)
Q Consensus 91 -----~~~---~~~~----~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~---~~~~~~~~~~~~~~~i~~~~~~~~ 155 (335)
.++ +.+. ....++.+++.+. +-..+++|-.+|.|..+.=+ ..............+|+.+++..+
T Consensus 104 ~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~-~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d 182 (933)
T KOG2114|consen 104 KNNSPQCLYEHRIFTIKNPTNPSPASSLAVSE-DLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSD 182 (933)
T ss_pred CCCCcceeeeeeeeccCCCCCCCcceEEEEEc-cccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecC
Confidence 222 1111 1356788888888 78999999999999988532 111112223335678999999988
Q ss_pred CCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEee
Q 019847 156 GNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGID 231 (335)
Q Consensus 156 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~ 231 (335)
+..++....-..|.+|.+.. .. ........|..+..|..+++....+++++ +..+.+||.....+-..+.
T Consensus 183 ~~s~lFv~Tt~~V~~y~l~g-r~-p~~~~ld~~G~~lnCss~~~~t~qfIca~----~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 183 GKSVLFVATTEQVMLYSLSG-RT-PSLKVLDNNGISLNCSSFSDGTYQFICAG----SEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred CceeEEEEecceeEEEEecC-CC-cceeeeccCCccceeeecCCCCccEEEec----CceEEEEcCCCcceeeeec
Confidence 87734444456799999883 22 33455667788899999998776566654 6789999987655555554
No 329
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.79 E-value=2.2e-05 Score=68.64 Aligned_cols=244 Identities=11% Similarity=0.096 Sum_probs=137.4
Q ss_pred CceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcC--CCCEEEEEE---------CCCcEEEEeCCCceeEee
Q 019847 27 NNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSH--DAKTLAVGY---------MDSKLQLWDAETSKLVRN 95 (335)
Q Consensus 27 ~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~---------~dg~i~iw~~~~~~~~~~ 95 (335)
+.+++++.++.|+-+|.++++..-......+...-..+.-+| .+..++.++ .+|.+..+|.++|+.+..
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~ 190 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWR 190 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeE
Confidence 778888889999999999999866655543310001111122 234555554 367899999999998877
Q ss_pred ecccccc--------------------e-eEeeecCCCCCEEEEeeCCC------------------cEEEEecccCCee
Q 019847 96 LEGHHRR--------------------V-ATSSWNHWNGHILTSGSKDK------------------SIINHDVRVSNNV 136 (335)
Q Consensus 96 ~~~~~~~--------------------v-~~~~~~~~~~~~l~~~~~dg------------------~i~~~d~~~~~~~ 136 (335)
++..... + ....+.+ .+..++.++.++ .+.-+|..+++..
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~ 269 (488)
T cd00216 191 FYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDP-KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVK 269 (488)
T ss_pred eeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeC-CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEE
Confidence 6542110 0 0123333 456777777665 7889999888765
Q ss_pred eEEeecCCC-----CEEEEEee----cCCC---EEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcE
Q 019847 137 TSCIKAHSG-----EVCGLKWS----NEGN---LLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNV 204 (335)
Q Consensus 137 ~~~~~~~~~-----~i~~~~~~----~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 204 (335)
-+....+.. ......+. -++. .++.++.+|.+...|.++++. +-..... ...+..+| + .+
T Consensus 270 W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~---~W~~~~~---~~~~~~~~-~-~v 341 (488)
T cd00216 270 WFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKL---ISARPEV---EQPMAYDP-G-LV 341 (488)
T ss_pred EEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcE---eeEeEee---ccccccCC-c-eE
Confidence 543222111 00000111 1232 677888899999999887643 2221100 11123333 1 22
Q ss_pred EEEec---------------CCCCCeEEEEECCCCceEEEeecCCcEeEEEe---CCCCceeeeeeeeeeecCCCeEEEE
Q 019847 205 LATGG---------------GREDGCIKIWNVQKGTCIHGIDAKAQICGLEW---NRHHKEILSGHGFSASGDGNKLCLW 266 (335)
Q Consensus 205 ~~~~~---------------g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~i~ 266 (335)
++... ...+|.+.-.|+.+|+.+-+.+.........+ ...+..++.+..+.+++.+|.++.+
T Consensus 342 yv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~al 421 (488)
T cd00216 342 YLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAF 421 (488)
T ss_pred EEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEE
Confidence 22110 11468899999999998877765411000000 0001112222333444779999999
Q ss_pred ECCCCceeecccC
Q 019847 267 KYPNMTKVGELQS 279 (335)
Q Consensus 267 d~~~~~~~~~~~~ 279 (335)
|.++++.+.+.+.
T Consensus 422 d~~tG~~lW~~~~ 434 (488)
T cd00216 422 DATTGKELWKFRT 434 (488)
T ss_pred ECCCCceeeEEEC
Confidence 9999999887664
No 330
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.78 E-value=5.8e-07 Score=75.73 Aligned_cols=99 Identities=15% Similarity=0.237 Sum_probs=75.9
Q ss_pred EEEEEecCCceeeE--EeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCE
Q 019847 38 LFLWKWENGKVKKL--LQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHI 115 (335)
Q Consensus 38 i~vw~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 115 (335)
-.+|++..+++.+. ..+ .....|.|++++|+.+.|+.|+.||+|.+||...+.. .+....-.++.++|+| ++.+
T Consensus 238 ~ciYE~~r~klqrvsvtsi-pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t--~~~ka~~~P~~iaWHp-~gai 313 (545)
T PF11768_consen 238 SCIYECSRNKLQRVSVTSI-PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVT--LLAKAEFIPTLIAWHP-DGAI 313 (545)
T ss_pred EEEEEeecCceeEEEEEEE-ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCee--eeeeecccceEEEEcC-CCcE
Confidence 46677666654432 222 4577899999999999999999999999999876533 2333556789999999 9999
Q ss_pred EEEeeCCCcEEEEecccCCeeeEEe
Q 019847 116 LTSGSKDKSIINHDVRVSNNVTSCI 140 (335)
Q Consensus 116 l~~~~~dg~i~~~d~~~~~~~~~~~ 140 (335)
+++|+..|.+.+||+.-.....+.+
T Consensus 314 ~~V~s~qGelQ~FD~ALspi~~qLl 338 (545)
T PF11768_consen 314 FVVGSEQGELQCFDMALSPIKMQLL 338 (545)
T ss_pred EEEEcCCceEEEEEeecCccceeec
Confidence 9999999999999997554434433
No 331
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.77 E-value=5.6e-05 Score=61.94 Aligned_cols=280 Identities=16% Similarity=0.131 Sum_probs=137.6
Q ss_pred CCceEEEec---CCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccc
Q 019847 26 RNNVLAVAL---GPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRR 102 (335)
Q Consensus 26 ~~~~~~~~~---~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 102 (335)
+++++.++. ...+++.|+.+++..++...++ .......++|+.+.++-......++-.|+++.+....+.....-
T Consensus 47 G~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g--~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~ 124 (386)
T PF14583_consen 47 GRKLLFASDFDGNRNLYLLDLATGEITQLTDGPG--DNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDW 124 (386)
T ss_dssp S-EEEEEE-TTSS-EEEEEETTT-EEEE---SS---B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTE
T ss_pred CCEEEEEeccCCCcceEEEEcccCEEEECccCCC--CCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCccc
Confidence 346666553 4578888899998766655332 22335667898888876656678999999998766656555555
Q ss_pred eeEeeecC-CCCCEEEEeeC----------------------CCcEEEEecccCCeeeEEeecCCCCEEEEEeec-CCCE
Q 019847 103 VATSSWNH-WNGHILTSGSK----------------------DKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSN-EGNL 158 (335)
Q Consensus 103 v~~~~~~~-~~~~~l~~~~~----------------------dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~ 158 (335)
+-...|.. .++..++..-. ...|.-.|+.+++ ...+......+..+.|+| +...
T Consensus 125 ~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~--~~~v~~~~~wlgH~~fsP~dp~l 202 (386)
T PF14583_consen 125 KGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGE--RKVVFEDTDWLGHVQFSPTDPTL 202 (386)
T ss_dssp EEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT----EEEEEEESS-EEEEEEETTEEEE
T ss_pred ccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCc--eeEEEecCccccCcccCCCCCCE
Confidence 55566642 24444432211 1234445555443 233333456678899999 5556
Q ss_pred EEEEeC---CC-eEEEEEccCCCcccceeeccCC--CCCeeEEEecCCCCcEEEEec--CCCCCeEEEEECCCCceEEEe
Q 019847 159 LASGGD---DN-VVRIWERSKMSSSKSLHRFTDH--CGGVKALAWSPHQVNVLATGG--GREDGCIKIWNVQKGTCIHGI 230 (335)
Q Consensus 159 l~~~~~---dg-~i~iwd~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~--g~~d~~i~i~d~~~~~~~~~~ 230 (335)
|+.|-+ +. .-|||-++..... ...+..+ ...+.-=-|.|+|..+...+. |..+..|.-+|+.+++.....
T Consensus 203 i~fCHEGpw~~Vd~RiW~i~~dg~~--~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~ 280 (386)
T PF14583_consen 203 IMFCHEGPWDLVDQRIWTINTDGSN--VKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLM 280 (386)
T ss_dssp EEEEE-S-TTTSS-SEEEEETTS-----EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEE
T ss_pred EEEeccCCcceeceEEEEEEcCCCc--ceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEE
Confidence 666553 22 2367776643221 2222222 223444468999988776542 224667888899988765433
Q ss_pred ecCCcEeEEEeCCCCceeeeeeee----eee-------cCCCeEEEEECCCCceeec---------ccCCCC-ceeEeEE
Q 019847 231 DAKAQICGLEWNRHHKEILSGHGF----SAS-------GDGNKLCLWKYPNMTKVGE---------LQSSNS-RILDLSQ 289 (335)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~-------~~~~~i~i~d~~~~~~~~~---------~~~~~~-~i~~~~~ 289 (335)
+.+ ....+..+++|++++- .+- .+. ..+--|+++++..++.... +.++.. .=....|
T Consensus 281 ~~p-~~~H~~ss~Dg~L~vG-DG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~F 358 (386)
T PF14583_consen 281 EMP-WCSHFMSSPDGKLFVG-DGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSF 358 (386)
T ss_dssp EE--SEEEEEE-TTSSEEEE-EE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT----EE
T ss_pred eCC-ceeeeEEcCCCCEEEe-cCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCcc
Confidence 333 4556777888887653 210 000 1123577788877654311 111111 1135789
Q ss_pred cCCCCEEE-EEeCCCcEEEEecCCC
Q 019847 290 SPDGLTVA-TAGADETIRFWEAFGP 313 (335)
Q Consensus 290 ~~~~~~l~-~~~~dg~v~iw~~~~~ 313 (335)
+|||++++ ++...|...||-++-+
T Consensus 359 SPDgk~VlF~Sd~~G~~~vY~v~i~ 383 (386)
T PF14583_consen 359 SPDGKWVLFRSDMEGPPAVYLVEIP 383 (386)
T ss_dssp -TTSSEEEEEE-TTSS-EEEEEE--
T ss_pred CCCCCEEEEECCCCCCccEEEEeCc
Confidence 99998765 5567888888866543
No 332
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.75 E-value=5.8e-09 Score=87.90 Aligned_cols=202 Identities=21% Similarity=0.310 Sum_probs=138.5
Q ss_pred cccccceeeeecCC---ceEE-EecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcC-CCCEEEEEE----CCCcEEE
Q 019847 14 MEDYYSKVIDWGRN---NVLA-VALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSH-DAKTLAVGY----MDSKLQL 84 (335)
Q Consensus 14 ~~~~~~~~~~~~~~---~~~~-~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~----~dg~i~i 84 (335)
.+..+..|+++.-+ -+++ +..+|.|.+-.+........-..++|....++++|++ |.+.||+|- .|..+.|
T Consensus 54 sdtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~I 133 (783)
T KOG1008|consen 54 SDTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKI 133 (783)
T ss_pred ccCCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccc
Confidence 34556778887642 3444 5578999999887654432334467889999999998 677888874 4678999
Q ss_pred EeCCCc--eeEe--eecc-cccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeec-CCCE
Q 019847 85 WDAETS--KLVR--NLEG-HHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSN-EGNL 158 (335)
Q Consensus 85 w~~~~~--~~~~--~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~ 158 (335)
||+.++ .+.. .+.. ......+++|.. +.+++.+|.....+.++|++....... .-....+..+...| .+++
T Consensus 134 wdi~s~ltvPke~~~fs~~~l~gqns~cwlr-d~klvlaGm~sr~~~ifdlRqs~~~~~--svnTk~vqG~tVdp~~~nY 210 (783)
T KOG1008|consen 134 WDINSLLTVPKESPLFSSSTLDGQNSVCWLR-DTKLVLAGMTSRSVHIFDLRQSLDSVS--SVNTKYVQGITVDPFSPNY 210 (783)
T ss_pred eecccccCCCccccccccccccCcccccccc-Ccchhhcccccchhhhhhhhhhhhhhh--hhhhhhcccceecCCCCCc
Confidence 999876 2221 2222 345566888985 889999999999999999984322111 12334566778888 7888
Q ss_pred EEEEeCCCeEEEEE-ccCCCcccceeeccCC----CCCeeEEEecCCCCcEEEEecCCCCCeEEEEECC
Q 019847 159 LASGGDDNVVRIWE-RSKMSSSKSLHRFTDH----CGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQ 222 (335)
Q Consensus 159 l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~ 222 (335)
+++-. ||.|.+|| .++-+ .++...... ...+..++|.|...-++++.. ...++|+++|+.
T Consensus 211 ~cs~~-dg~iAiwD~~rnie--npl~~i~~~~N~~~~~l~~~aycPtrtglla~l~-RdS~tIrlydi~ 275 (783)
T KOG1008|consen 211 FCSNS-DGDIAIWDTYRNIE--NPLQIILRNENKKPKQLFALAYCPTRTGLLAVLS-RDSITIRLYDIC 275 (783)
T ss_pred eeccc-cCceeeccchhhhc--cHHHHHhhCCCCcccceeeEEeccCCcchhhhhc-cCcceEEEeccc
Confidence 88766 99999999 33322 223222222 234899999998877777764 356899999985
No 333
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.74 E-value=4.6e-06 Score=70.62 Aligned_cols=186 Identities=18% Similarity=0.234 Sum_probs=117.8
Q ss_pred CCCCceEEEEcCCCCEEEEEE---CC-CcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCc--EEEEec
Q 019847 57 EDDYPTSVSWSHDAKTLAVGY---MD-SKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKS--IINHDV 130 (335)
Q Consensus 57 ~~~~v~~~~~~~~~~~l~~~~---~d-g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--i~~~d~ 130 (335)
....+..-+|+|+++.++... .. ..+.++++++++...... ..+.-...+|+|....++++...||. |.++|+
T Consensus 191 ~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl 269 (425)
T COG0823 191 SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDL 269 (425)
T ss_pred cCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcC
Confidence 345677788999998776553 22 469999999887665554 44555667899944445556667775 555566
Q ss_pred ccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeC-CCe--EEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEE
Q 019847 131 RVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGD-DNV--VRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLAT 207 (335)
Q Consensus 131 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~--i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 207 (335)
.... ...+....+.-..=.|+|||+.++..+. .|. |.++|.+.... ...+. ....-..-.|+|+|++++..
T Consensus 270 ~~~~--~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~--~riT~--~~~~~~~p~~SpdG~~i~~~ 343 (425)
T COG0823 270 DGKN--LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV--TRLTF--SGGGNSNPVWSPDGDKIVFE 343 (425)
T ss_pred CCCc--ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce--eEeec--cCCCCcCccCCCCCCEEEEE
Confidence 5444 2224333343446789999998887764 343 55556554322 22222 22222267899999988887
Q ss_pred ecCCCCCe--EEEEECCCCceEEEeecCCcEeEEEeCCCCceeeee
Q 019847 208 GGGREDGC--IKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSG 251 (335)
Q Consensus 208 ~~g~~d~~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (335)
.. .+|. |.+.|+.++...+.+..........|.+++..+...
T Consensus 344 ~~--~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~ 387 (425)
T COG0823 344 SS--SGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFS 387 (425)
T ss_pred ec--cCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEe
Confidence 64 4555 777777766655566555556667788888777654
No 334
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=2.2e-06 Score=68.76 Aligned_cols=163 Identities=12% Similarity=0.146 Sum_probs=105.9
Q ss_pred EEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecC-CCEEE
Q 019847 82 LQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNE-GNLLA 160 (335)
Q Consensus 82 i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~ 160 (335)
++..+..+.+....+..+...|..++|+|.+..++..++.+..|++.|+++... ...+..+ ..+++++|.-| .+++.
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~-vssy~a~-~~~wSC~wDlde~h~IY 252 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCV-VSSYIAY-NQIWSCCWDLDERHVIY 252 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEeccccee-eeheecc-CCceeeeeccCCcceeE
Confidence 566665566666667778889999999996666899999999999999996554 4445555 78999999874 56788
Q ss_pred EEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEec------CCCCcEEEEecCCCCCeEEEEECC----CCceEEEe
Q 019847 161 SGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWS------PHQVNVLATGGGREDGCIKIWNVQ----KGTCIHGI 230 (335)
Q Consensus 161 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~------~~~~~~~~~~~g~~d~~i~i~d~~----~~~~~~~~ 230 (335)
.|...|.|.+||++..+.......-.-...+|..++.- +.+. +++... -.+..|++. ...++..+
T Consensus 253 aGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gg-lLv~~l----t~l~f~ei~~s~~~~p~vlel 327 (463)
T KOG1645|consen 253 AGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGG-LLVFAL----TVLQFYEIVFSAECLPCVLEL 327 (463)
T ss_pred EeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccc-eEEeee----hhhhhhhhhccccCCCccccc
Confidence 88899999999999765432222111123344433322 2232 333322 234455543 22334445
Q ss_pred ecCCcEeEEEeCCCCceeeee
Q 019847 231 DAKAQICGLEWNRHHKEILSG 251 (335)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~ 251 (335)
+.++...++++.+..+.++..
T Consensus 328 e~pG~cismqy~~~snh~l~t 348 (463)
T KOG1645|consen 328 EPPGICISMQYHGVSNHLLLT 348 (463)
T ss_pred CCCcceeeeeecCccceEEEE
Confidence 556677777777766666554
No 335
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.71 E-value=3.3e-05 Score=67.11 Aligned_cols=223 Identities=9% Similarity=0.003 Sum_probs=133.7
Q ss_pred CCCEEEEEEC-CCcEEEEeCCCceeEeeec-ccccceeEeeec--CCCCCEEEEee------------------CCCcEE
Q 019847 69 DAKTLAVGYM-DSKLQLWDAETSKLVRNLE-GHHRRVATSSWN--HWNGHILTSGS------------------KDKSII 126 (335)
Q Consensus 69 ~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~-~~~~~v~~~~~~--~~~~~~l~~~~------------------~dg~i~ 126 (335)
||++|+.-.. +..|...++...+.-+.++ .....+..+.+. | +..++++++ ..+.+.
T Consensus 140 dGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p-~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vS 218 (635)
T PRK02888 140 DGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIP-RTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFT 218 (635)
T ss_pred ceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccC-CccEEEeCcccccccCCCCCEeecccceeEEEE
Confidence 6777777653 5566666666555433332 122334444443 3 333443332 223455
Q ss_pred EEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCC---C-eEEEEEccCCCcccceeeccCCCCCeeEEEecCCCC
Q 019847 127 NHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDD---N-VVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQV 202 (335)
Q Consensus 127 ~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g-~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 202 (335)
+.|.++.+...+..- .+....++++|+++++++.+.+ | ++..-+.... ..+..+.. ..+ -++.++|+
T Consensus 219 vID~etmeV~~qV~V--dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~---d~~vvfni--~~i--ea~vkdGK 289 (635)
T PRK02888 219 AVDAETMEVAWQVMV--DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAER---DWVVVFNI--ARI--EEAVKAGK 289 (635)
T ss_pred EEECccceEEEEEEe--CCCcccceECCCCCEEEEeccCcccCcceeeeccccC---ceEEEEch--HHH--HHhhhCCC
Confidence 556554433333222 2234567788888888877632 1 2222221110 00111100 000 13345676
Q ss_pred cEEEEecCCCCCeEEEEECCC-----CceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCce----
Q 019847 203 NVLATGGGREDGCIKIWNVQK-----GTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTK---- 273 (335)
Q Consensus 203 ~~~~~~~g~~d~~i~i~d~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~---- 273 (335)
+.++ .++.|.+.|.++ .+.+..+..+.....+.++|+|+++++.. ..++.+.|+|+.+.+.
T Consensus 290 ~~~V-----~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVan-----klS~tVSVIDv~k~k~~~~~ 359 (635)
T PRK02888 290 FKTI-----GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANG-----KLSPTVTVIDVRKLDDLFDG 359 (635)
T ss_pred EEEE-----CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeC-----CCCCcEEEEEChhhhhhhhc
Confidence 5554 367899999998 46778888889999999999999997763 5689999999988653
Q ss_pred --------eecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCC
Q 019847 274 --------VGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFG 312 (335)
Q Consensus 274 --------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~ 312 (335)
+.+.+--. .....+|.++|....|---|..|..|++..
T Consensus 360 ~~~~~~~vvaevevGl-GPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 360 KIKPRDAVVAEPELGL-GPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred cCCccceEEEeeccCC-CcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 33333322 245678999998888888999999999886
No 336
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.69 E-value=2.8e-05 Score=65.32 Aligned_cols=245 Identities=15% Similarity=0.166 Sum_probs=133.0
Q ss_pred CceEEEEcCCCCEEEEEECCCcEEEEeCCCcee-------------------------------------------Eeee
Q 019847 60 YPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKL-------------------------------------------VRNL 96 (335)
Q Consensus 60 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-------------------------------------------~~~~ 96 (335)
.|+.+.|+++..-|++|...|.|.||.....+. ...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 478899999988999999999999986532110 1112
Q ss_pred cccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEE-eec------CCCCEEEEEeec-----CC---CEEEE
Q 019847 97 EGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSC-IKA------HSGEVCGLKWSN-----EG---NLLAS 161 (335)
Q Consensus 97 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~-~~~------~~~~i~~~~~~~-----~~---~~l~~ 161 (335)
....++|++++.+ +-.+++.|..+|.+.+.|++....+... +.. ....++++.|.. |+ -.+++
T Consensus 83 ~~~~g~vtal~~S--~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v 160 (395)
T PF08596_consen 83 DAKQGPVTALKNS--DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV 160 (395)
T ss_dssp ---S-SEEEEEE---BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred eccCCcEeEEecC--CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence 2335788899887 6789999999999999999854433321 112 234688888863 22 37889
Q ss_pred EeCCCeEEEEEccCCCcc----cceeeccCCCCCeeEEE-ecCC-C-------------------CcEEEEecCCCCCeE
Q 019847 162 GGDDNVVRIWERSKMSSS----KSLHRFTDHCGGVKALA-WSPH-Q-------------------VNVLATGGGREDGCI 216 (335)
Q Consensus 162 ~~~dg~i~iwd~~~~~~~----~~~~~~~~~~~~v~~~~-~~~~-~-------------------~~~~~~~~g~~d~~i 216 (335)
|...|.+.+|.+.-.... ........+.++|..+. ++.+ + +.+++++ .+..+
T Consensus 161 GTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv---Se~~i 237 (395)
T PF08596_consen 161 GTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV---SESDI 237 (395)
T ss_dssp EETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE----SSEE
T ss_pred EeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE---cccce
Confidence 999999999987521111 11111123556665554 3221 1 1244444 38899
Q ss_pred EEEECCCCceEEEeecC-CcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCC----CceeEeEEcC
Q 019847 217 KIWNVQKGTCIHGIDAK-AQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSN----SRILDLSQSP 291 (335)
Q Consensus 217 ~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~----~~i~~~~~~~ 291 (335)
+++...+.+..+..... .....+.+-+-.. .-.+..+++-..+|.+++|.+...+.+..++.+. ..+....+++
T Consensus 238 rv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~-~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~ 316 (395)
T PF08596_consen 238 RVFKPPKSKGAHKSFDDPFLCSSASVVPTIS-RNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISR 316 (395)
T ss_dssp EEE-TT---EEEEE-SS-EEEEEEEEEEEE--EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-T
T ss_pred EEEeCCCCcccceeeccccccceEEEEeecc-cCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECC
Confidence 99999888776655422 1222333321000 0011123333679999999999999887776532 2456678899
Q ss_pred CCCEEEEEeCCCcEEEEecC
Q 019847 292 DGLTVATAGADETIRFWEAF 311 (335)
Q Consensus 292 ~~~~l~~~~~dg~v~iw~~~ 311 (335)
+|..++-.+. ..+.++.+.
T Consensus 317 ~Gdi~~~~gp-sE~~l~sv~ 335 (395)
T PF08596_consen 317 NGDIFYWTGP-SEIQLFSVW 335 (395)
T ss_dssp TS-EEEE-SS-SEEEEEEEE
T ss_pred CCCEEEEeCc-ccEEEEEEE
Confidence 9997776654 344444443
No 337
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.66 E-value=0.00012 Score=59.27 Aligned_cols=233 Identities=14% Similarity=0.089 Sum_probs=131.1
Q ss_pred eeecCCceEEEecCCeEEEEEe-cCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeee----
Q 019847 22 IDWGRNNVLAVALGPVLFLWKW-ENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNL---- 96 (335)
Q Consensus 22 ~~~~~~~~~~~~~~~~i~vw~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~---- 96 (335)
.+-.++.++.|+.+| +++++. ...+...... ...|..+...|+-+.|++-+ |+.++++++..-......
T Consensus 3 ~~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~----~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~ 76 (275)
T PF00780_consen 3 ADSWGDRLLVGTEDG-LYVYDLSDPSKPTRILK----LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLA 76 (275)
T ss_pred cccCCCEEEEEECCC-EEEEEecCCccceeEee----cceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccc
Confidence 344556777777777 999998 3333333332 33499999999877776664 699999998764433311
Q ss_pred ----------cccccceeEee-ecCCCCCEEEEeeCCCcEEEEecccCC----eeeEEeecCCCCEEEEEeecCCCEEEE
Q 019847 97 ----------EGHHRRVATSS-WNHWNGHILTSGSKDKSIINHDVRVSN----NVTSCIKAHSGEVCGLKWSNEGNLLAS 161 (335)
Q Consensus 97 ----------~~~~~~v~~~~-~~~~~~~~l~~~~~dg~i~~~d~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~ 161 (335)
......+...+ -....+...++......|.+|...... ...+.+ .....+.+++|. ++.++.
T Consensus 77 ~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~-~lp~~~~~i~~~--~~~i~v 153 (275)
T PF00780_consen 77 FPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEI-SLPDPPSSIAFL--GNKICV 153 (275)
T ss_pred ccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEE-EcCCCcEEEEEe--CCEEEE
Confidence 11223344444 112244444444555589888887531 122222 345788999998 457887
Q ss_pred EeCCCeEEEEEccCCCcccceeeccC----------CCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEE--E
Q 019847 162 GGDDNVVRIWERSKMSSSKSLHRFTD----------HCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIH--G 229 (335)
Q Consensus 162 ~~~dg~i~iwd~~~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~--~ 229 (335)
|..+ ...+.|+.+... ..+..... ...++..+... ++..+ .+ .|..-.+.|. .|+..+ .
T Consensus 154 ~~~~-~f~~idl~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~L-l~----~~~~g~fv~~-~G~~~r~~~ 224 (275)
T PF00780_consen 154 GTSK-GFYLIDLNTGSP-SELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFL-LC----YDNIGVFVNK-NGEPSRKST 224 (275)
T ss_pred EeCC-ceEEEecCCCCc-eEEeCccCCcchhhhcccCCCceEEEEeC-CceEE-EE----ecceEEEEcC-CCCcCcccE
Confidence 7755 477888885433 22221111 11233333333 34334 33 3444445554 444332 3
Q ss_pred eecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCC
Q 019847 230 IDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSN 281 (335)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~ 281 (335)
+.-...+.++.+. ..+++. -.++.|.||++.+++.++.+....
T Consensus 225 i~W~~~p~~~~~~--~pyli~-------~~~~~iEV~~~~~~~lvQ~i~~~~ 267 (275)
T PF00780_consen 225 IQWSSAPQSVAYS--SPYLIA-------FSSNSIEVRSLETGELVQTIPLPN 267 (275)
T ss_pred EEcCCchhEEEEE--CCEEEE-------ECCCEEEEEECcCCcEEEEEECCC
Confidence 3333444455542 234433 236779999999999988876543
No 338
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.64 E-value=1.4e-08 Score=85.60 Aligned_cols=202 Identities=17% Similarity=0.299 Sum_probs=127.5
Q ss_pred cceeEeeecCC-CCCEEEEeeCCCcEEEEecccCCee-eEEeecCCCCEEEEEeec-CCCEEEEEe----CCCeEEEEEc
Q 019847 101 RRVATSSWNHW-NGHILTSGSKDKSIINHDVRVSNNV-TSCIKAHSGEVCGLKWSN-EGNLLASGG----DDNVVRIWER 173 (335)
Q Consensus 101 ~~v~~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~-~~~~~~~~~~i~~~~~~~-~~~~l~~~~----~dg~i~iwd~ 173 (335)
..+.|+++.-. +..+++.|..+|.|-+-..+..... .....++..+.++++|++ |.++||+|- .|..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 34556665542 3367889999999999888754432 455667888999999999 677888874 3567999998
Q ss_pred cCCCc-ccceeecc-CCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCC-CCceeee
Q 019847 174 SKMSS-SKSLHRFT-DHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNR-HHKEILS 250 (335)
Q Consensus 174 ~~~~~-~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 250 (335)
.+.-. ++.-..+. +......+++|..+.+ ++.+|. ....+.++|++........-....+..+..+| .+.++++
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~k-lvlaGm--~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs 213 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTK-LVLAGM--TSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCS 213 (783)
T ss_pred ccccCCCccccccccccccCccccccccCcc-hhhccc--ccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceec
Confidence 86511 11111111 2334466889996664 555554 78899999998432211111122455677777 5555554
Q ss_pred eeeeeeecCCCeEEEEE-CCCCc-eeecccCCCC----ceeEeEEcCCC-CEEEEEe-CCCcEEEEecCC
Q 019847 251 GHGFSASGDGNKLCLWK-YPNMT-KVGELQSSNS----RILDLSQSPDG-LTVATAG-ADETIRFWEAFG 312 (335)
Q Consensus 251 ~~~~~~~~~~~~i~i~d-~~~~~-~~~~~~~~~~----~i~~~~~~~~~-~~l~~~~-~dg~v~iw~~~~ 312 (335)
..|+.|.+|| ..+-+ ++..+..... .+..++|+|.. ..+++.. ..++|+.+++..
T Consensus 214 -------~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 214 -------NSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred -------cccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 4499999999 44332 3333322222 48899999953 2445554 457899998764
No 339
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.63 E-value=7e-05 Score=63.83 Aligned_cols=220 Identities=18% Similarity=0.154 Sum_probs=116.5
Q ss_pred CCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEE-ecccCCe
Q 019847 57 EDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINH-DVRVSNN 135 (335)
Q Consensus 57 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~-d~~~~~~ 135 (335)
....+..+.++|+|++++++ .||.-.|+.....+... .+.-....|.+ . +.+++-..++.|.++ +.....
T Consensus 31 ~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~-----~G~g~~~vw~~-~-n~yAv~~~~~~I~I~kn~~~~~- 101 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKA-----FGSGLSFVWSS-R-NRYAVLESSSTIKIYKNFKNEV- 101 (443)
T ss_dssp -SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEE-----EEE-SEEEE-T-S-SEEEEE-TTS-EEEEETTEE-T-
T ss_pred CCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcccc-----cCceeEEEEec-C-ccEEEEECCCeEEEEEcCcccc-
Confidence 44567899999999999885 58889999854443322 24456678886 4 446777778899996 443222
Q ss_pred eeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCe
Q 019847 136 VTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGC 215 (335)
Q Consensus 136 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~ 215 (335)
... +. ....+..+-. |.+|+..+. +.|.+||..+. +.+..+.- .+|..+.|++++..++..+ +..
T Consensus 102 ~k~-i~-~~~~~~~If~---G~LL~~~~~-~~i~~yDw~~~---~~i~~i~v--~~vk~V~Ws~~g~~val~t----~~~ 166 (443)
T PF04053_consen 102 VKS-IK-LPFSVEKIFG---GNLLGVKSS-DFICFYDWETG---KLIRRIDV--SAVKYVIWSDDGELVALVT----KDS 166 (443)
T ss_dssp T-------SS-EEEEE----SSSEEEEET-TEEEEE-TTT-----EEEEESS---E-EEEEE-TTSSEEEEE-----S-S
T ss_pred ceE-Ec-CCcccceEEc---CcEEEEECC-CCEEEEEhhHc---ceeeEEec--CCCcEEEEECCCCEEEEEe----CCe
Confidence 111 11 1223444433 787877764 48999998763 45665542 3489999999997665554 567
Q ss_pred EEEEECCCC-----------ceEEEe-ecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCc
Q 019847 216 IKIWNVQKG-----------TCIHGI-DAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSR 283 (335)
Q Consensus 216 i~i~d~~~~-----------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~ 283 (335)
+.+++.... ..+..+ +....|.+..|..+ -++.+. .+.++-+ ..|+. ..+..-..+
T Consensus 167 i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT--------~~~lkYl--~~Ge~-~~i~~ld~~ 234 (443)
T PF04053_consen 167 IYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYTT--------SNHLKYL--VNGET-GIIAHLDKP 234 (443)
T ss_dssp EEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE---------TTEEEEE--ETTEE-EEEEE-SS-
T ss_pred EEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEEc--------CCeEEEE--EcCCc-ceEEEcCCc
Confidence 888775433 023333 23678888888776 333322 2355542 22222 122222345
Q ss_pred eeEeEEcCCCCEEEEEeCCCcEEEEecCC
Q 019847 284 ILDLSQSPDGLTVATAGADETIRFWEAFG 312 (335)
Q Consensus 284 i~~~~~~~~~~~l~~~~~dg~v~iw~~~~ 312 (335)
+.=+...|+.+.+.....|+.|..+.+..
T Consensus 235 ~yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 235 LYLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp -EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred eEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 66677778777888899999998887653
No 340
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.63 E-value=0.00021 Score=60.41 Aligned_cols=265 Identities=12% Similarity=0.108 Sum_probs=170.3
Q ss_pred EEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEE-CCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEE
Q 019847 38 LFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGY-MDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHIL 116 (335)
Q Consensus 38 i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 116 (335)
+.+++..+.+......+.. ....+...|++..+.... ....+...+...................++.++...+..
T Consensus 13 ~~v~~~~~~~~~~~~~~~~---~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vy 89 (381)
T COG3391 13 VSVINTGTNKVTAAISLGR---GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVY 89 (381)
T ss_pred eEEEeecccEEEEEeecCC---CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEE
Confidence 6666666655544444322 467788889886555443 222455555542222221221113445677777344466
Q ss_pred EEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeC---CCeEEEEEccCCCcccceeeccCCCCCee
Q 019847 117 TSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGD---DNVVRIWERSKMSSSKSLHRFTDHCGGVK 193 (335)
Q Consensus 117 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~v~ 193 (335)
+....++.|.+.|..+.........+. ....++++|+++.+.++.. ++.+.+.|..+. +..........+ .
T Consensus 90 v~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~---~~~~~~~vG~~P-~ 163 (381)
T COG3391 90 VTTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATN---KVTATIPVGNTP-T 163 (381)
T ss_pred EecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCC---eEEEEEecCCCc-c
Confidence 666677999999977665544443333 5678999999887777665 678888885553 333333322234 8
Q ss_pred EEEecCCCCcEEEEecCCCCCeEEEEECCCCceEE-----EeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEEC
Q 019847 194 ALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIH-----GIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKY 268 (335)
Q Consensus 194 ~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~ 268 (335)
.++++|++..++++.. .++.|.+.|........ ..........+.++|+|.++..... .+.++.+...|.
T Consensus 164 ~~a~~p~g~~vyv~~~--~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~---~~~~~~v~~id~ 238 (381)
T COG3391 164 GVAVDPDGNKVYVTNS--DDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVAND---GSGSNNVLKIDT 238 (381)
T ss_pred eEEECCCCCeEEEEec--CCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEec---cCCCceEEEEeC
Confidence 8999999998888765 79999999977666553 1333455678899999997766531 122468999999
Q ss_pred CCCceeecccCCCC-ceeEeEEcCCCCEEEEEeC-CCcEEEEecCCCCCC
Q 019847 269 PNMTKVGELQSSNS-RILDLSQSPDGLTVATAGA-DETIRFWEAFGPSGD 316 (335)
Q Consensus 269 ~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~-dg~v~iw~~~~~~~~ 316 (335)
.++.....-..-.. ....+..+|+|..+.+... .+.+.+-|.......
T Consensus 239 ~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~ 288 (381)
T COG3391 239 ATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVV 288 (381)
T ss_pred CCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCcee
Confidence 88877665221111 4567899999998888844 477888887765433
No 341
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.62 E-value=9.6e-05 Score=59.72 Aligned_cols=227 Identities=15% Similarity=0.069 Sum_probs=129.7
Q ss_pred CCCCEEEEEECCCcEEEEeCCC-ceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEE-------
Q 019847 68 HDAKTLAVGYMDSKLQLWDAET-SKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSC------- 139 (335)
Q Consensus 68 ~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~------- 139 (335)
..++.|+.|+.+| +.+++... .+..+.. +...|..+...+ +-+.|++-+ |+.+.++++..-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~-~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLP-ELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEec-ccCEEEEEc-CCccEEEEchhhccccccccccccc
Confidence 3678999999888 99999833 3333322 223499999998 666665554 499999998754332210
Q ss_pred ------eecCCCCEEEEE--eecCCCEEEEEeCCCeEEEEEccCCCc-c-cceeeccCCCCCeeEEEecCCCCcEEEEec
Q 019847 140 ------IKAHSGEVCGLK--WSNEGNLLASGGDDNVVRIWERSKMSS-S-KSLHRFTDHCGGVKALAWSPHQVNVLATGG 209 (335)
Q Consensus 140 ------~~~~~~~i~~~~--~~~~~~~l~~~~~dg~i~iwd~~~~~~-~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 209 (335)
.......+...+ -.+.+...+......+|.+|....... . ...+.+. -...+..++|.++ .++.+
T Consensus 80 ~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~~~---~i~v~- 154 (275)
T PF00780_consen 80 SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFLGN---KICVG- 154 (275)
T ss_pred cccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEeCC---EEEEE-
Confidence 111223444444 112333334444466999998876422 2 3444443 4577889999843 34444
Q ss_pred CCCCCeEEEEECCCCceEEEeecC-------------CcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceee-
Q 019847 210 GREDGCIKIWNVQKGTCIHGIDAK-------------AQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVG- 275 (335)
Q Consensus 210 g~~d~~i~i~d~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~- 275 (335)
......+.|+.++.....+... .++..+. -+++.++++. +..-.+.|. .|++..
T Consensus 155 --~~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~Ll~~--------~~~g~fv~~-~G~~~r~ 222 (275)
T PF00780_consen 155 --TSKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQ-LSDNEFLLCY--------DNIGVFVNK-NGEPSRK 222 (275)
T ss_pred --eCCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEE-eCCceEEEEe--------cceEEEEcC-CCCcCcc
Confidence 2567899999977665443221 1222233 3344555543 333333343 444332
Q ss_pred -cccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCcc
Q 019847 276 -ELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDEDSV 320 (335)
Q Consensus 276 -~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~ 320 (335)
.++- ...+.++++.. .+|+..+.+ .|.||++.+++..+...
T Consensus 223 ~~i~W-~~~p~~~~~~~--pyli~~~~~-~iEV~~~~~~~lvQ~i~ 264 (275)
T PF00780_consen 223 STIQW-SSAPQSVAYSS--PYLIAFSSN-SIEVRSLETGELVQTIP 264 (275)
T ss_pred cEEEc-CCchhEEEEEC--CEEEEECCC-EEEEEECcCCcEEEEEE
Confidence 2222 22455666643 478877664 59999999987655443
No 342
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.62 E-value=4.8e-08 Score=85.64 Aligned_cols=198 Identities=15% Similarity=0.167 Sum_probs=143.8
Q ss_pred eeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCC--eE
Q 019847 91 KLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDN--VV 168 (335)
Q Consensus 91 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i 168 (335)
+..+.+..|....+|++|+- +.+.|+.|+..|.|++|+..++.. ......|..+|+.+.-+.+|..+++.+.-. -.
T Consensus 1092 r~w~~frd~~~~fTc~afs~-~~~hL~vG~~~Geik~~nv~sG~~-e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSG-GTNHLAVGSHAGEIKIFNVSSGSM-EESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred ccchhhhccccceeeEEeec-CCceEEeeeccceEEEEEccCccc-cccccccccccccccccCCcceeeeeccccCchH
Confidence 34456777888999999999 899999999999999999987765 455678999999999888998887766443 46
Q ss_pred EEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec-----CCcEeEEEeCC
Q 019847 169 RIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA-----KAQICGLEWNR 243 (335)
Q Consensus 169 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-----~~~~~~~~~~~ 243 (335)
.+|++.. .....+.+.. -.++.|+.....-+ .|. ......+||++++.++.++-. ...-+...|+|
T Consensus 1170 aLW~~~s--~~~~~Hsf~e----d~~vkFsn~~q~r~-~gt--~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP 1240 (1516)
T KOG1832|consen 1170 ALWDASS--TGGPRHSFDE----DKAVKFSNSLQFRA-LGT--EADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSP 1240 (1516)
T ss_pred HHhcccc--ccCccccccc----cceeehhhhHHHHH-hcc--cccceEEEecccCcHHHHhcCcchhhhhhccccccCC
Confidence 7899765 2344444432 35678877643222 222 556789999999987766322 23457789999
Q ss_pred CCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCC
Q 019847 244 HHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGD 316 (335)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~ 316 (335)
....++- || .+||++..+.++.|...... ..-.|+|.|.-++.-++ |||+.+.+..
T Consensus 1241 ~D~LIln---------dG--vLWDvR~~~aIh~FD~ft~~-~~G~FHP~g~eVIINSE-----IwD~RTF~lL 1296 (1516)
T KOG1832|consen 1241 CDTLILN---------DG--VLWDVRIPEAIHRFDQFTDY-GGGGFHPSGNEVIINSE-----IWDMRTFKLL 1296 (1516)
T ss_pred CcceEee---------Cc--eeeeeccHHHHhhhhhheec-ccccccCCCceEEeech-----hhhhHHHHHH
Confidence 9988763 44 47999998888777655422 23469999988887664 8988875543
No 343
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.61 E-value=0.00012 Score=60.51 Aligned_cols=220 Identities=12% Similarity=0.076 Sum_probs=125.3
Q ss_pred CeEEEEEecCCceeeEEeecCCCCCceEEEE---cCC----CCEEEEEEC---------C-CcEEEEeCCCc----eeEe
Q 019847 36 PVLFLWKWENGKVKKLLQVPGEDDYPTSVSW---SHD----AKTLAVGYM---------D-SKLQLWDAETS----KLVR 94 (335)
Q Consensus 36 ~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~---~~~----~~~l~~~~~---------d-g~i~iw~~~~~----~~~~ 94 (335)
..|++.|..+.+....+.++.+ ..+.+++. ..+ ..++++|+. . |.|.++++... ..+.
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~-E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~ 80 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPN-EHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLK 80 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETT-EEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEE
T ss_pred cEEEEEeCCCCeEEEEEECCCC-ceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEE
Confidence 4688899888887777777653 34555443 322 468888753 2 89999999884 1222
Q ss_pred ee--cccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCC-eeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEE
Q 019847 95 NL--EGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSN-NVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIW 171 (335)
Q Consensus 95 ~~--~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw 171 (335)
.+ ....++|++++-. ++. |+++. .+.|.+|++...+ ............+.++... +++++.|+....+.++
T Consensus 81 ~i~~~~~~g~V~ai~~~--~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~ 154 (321)
T PF03178_consen 81 LIHSTEVKGPVTAICSF--NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLL 154 (321)
T ss_dssp EEEEEEESS-EEEEEEE--TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEE
T ss_pred EEEEEeecCcceEhhhh--CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEE
Confidence 22 2356889988875 444 44333 5889999998777 3333333334466776655 5599999988888888
Q ss_pred EccCCCc-ccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCC-------Cc----eEEEeecCCcEeEE
Q 019847 172 ERSKMSS-SKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQK-------GT----CIHGIDAKAQICGL 239 (335)
Q Consensus 172 d~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-------~~----~~~~~~~~~~~~~~ 239 (335)
..+.... ...+.. ......++++.+-+++..++++. .+|.+.++.... +. ....+..+..++++
T Consensus 155 ~~~~~~~~l~~va~-d~~~~~v~~~~~l~d~~~~i~~D---~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~ 230 (321)
T PF03178_consen 155 RYDEENNKLILVAR-DYQPRWVTAAEFLVDEDTIIVGD---KDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSF 230 (321)
T ss_dssp EEETTTE-EEEEEE-ESS-BEEEEEEEE-SSSEEEEEE---TTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEE
T ss_pred EEEccCCEEEEEEe-cCCCccEEEEEEecCCcEEEEEc---CCCeEEEEEECCCCcccccccccceeEEEEECCCccceE
Confidence 6554211 122221 22345588888987765444433 799999998752 22 23444556777777
Q ss_pred ---EeCCC--CceeeeeeeeeeecCCCeEEEE
Q 019847 240 ---EWNRH--HKEILSGHGFSASGDGNKLCLW 266 (335)
Q Consensus 240 ---~~~~~--~~~~~~~~~~~~~~~~~~i~i~ 266 (335)
.+.|. +........+..++.+|.|...
T Consensus 231 ~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 231 RRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp EE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred EEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 55552 2221001112223567887743
No 344
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.60 E-value=0.00017 Score=58.08 Aligned_cols=268 Identities=12% Similarity=0.126 Sum_probs=150.6
Q ss_pred CeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEE----------CCCcEEEEeCCCceeEeeeccccc-c--
Q 019847 36 PVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGY----------MDSKLQLWDAETSKLVRNLEGHHR-R-- 102 (335)
Q Consensus 36 ~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~~~~-~-- 102 (335)
+.++++|.++++.+-.+.. +..-.+..+|+++.+.++. ..-.|.+||..+-....++.-... .
T Consensus 17 ~rv~viD~d~~k~lGmi~~----g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~ 92 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT----GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQ 92 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE----ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--
T ss_pred ceEEEEECCCCcEEEEeec----ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhe
Confidence 4899999999987666553 2345577899999988753 234799999999888776543222 1
Q ss_pred ----eeEeeecCCCCCEEEEee--CCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCC
Q 019847 103 ----VATSSWNHWNGHILTSGS--KDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKM 176 (335)
Q Consensus 103 ----v~~~~~~~~~~~~l~~~~--~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 176 (335)
.....++. ++++++... -..+|.+.|+...+- ...+. -.+ ...+--+++ +-|.+-+.||.+.-..+...
T Consensus 93 ~~~~~~~~~ls~-dgk~~~V~N~TPa~SVtVVDl~~~kv-v~ei~-~PG-C~~iyP~~~-~~F~~lC~DGsl~~v~Ld~~ 167 (342)
T PF06433_consen 93 VVPYKNMFALSA-DGKFLYVQNFTPATSVTVVDLAAKKV-VGEID-TPG-CWLIYPSGN-RGFSMLCGDGSLLTVTLDAD 167 (342)
T ss_dssp BS--GGGEEE-T-TSSEEEEEEESSSEEEEEEETTTTEE-EEEEE-GTS-EEEEEEEET-TEEEEEETTSCEEEEEETST
T ss_pred ecccccceEEcc-CCcEEEEEccCCCCeEEEEECCCCce-eeeec-CCC-EEEEEecCC-CceEEEecCCceEEEEECCC
Confidence 12234444 555554432 234566666653332 32222 111 111211222 45777788999998888743
Q ss_pred Ccccce--eeccCCCCCe-eEEEecCCCCcEEEEecCCCCCeEEEEECCCCceE--EEeec-----------CCcEeEEE
Q 019847 177 SSSKSL--HRFTDHCGGV-KALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCI--HGIDA-----------KAQICGLE 240 (335)
Q Consensus 177 ~~~~~~--~~~~~~~~~v-~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~--~~~~~-----------~~~~~~~~ 240 (335)
...... ..+.....++ ..-.+...+..++... .+|.|+--|+...... ..++. ++...-++
T Consensus 168 Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~S---y~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A 244 (342)
T PF06433_consen 168 GKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVS---YEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIA 244 (342)
T ss_dssp SSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEB---TTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EE
T ss_pred CCEeEeeccccCCCCcccccccceECCCCeEEEEe---cCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeee
Confidence 322211 1222223332 2334444444444433 6899999998765432 22221 11233356
Q ss_pred eCCCCceeeeeeeeeeec----CC--CeEEEEECCCCceeecccCCCCceeEeEEcCCCC-EEEEE-eCCCcEEEEecCC
Q 019847 241 WNRHHKEILSGHGFSASG----DG--NKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGL-TVATA-GADETIRFWEAFG 312 (335)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~----~~--~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~-~~dg~v~iw~~~~ 312 (335)
+++....+.+-.. -+. .+ ..|-++|+.+++.+.++... .++.+|+.+.+.+ +|++. ..++.+.+||..+
T Consensus 245 ~~~~~~rlyvLMh--~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~-~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~t 321 (342)
T PF06433_consen 245 YHAASGRLYVLMH--QGGEGSHKDPGTEVWVYDLKTHKRVARIPLE-HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAAT 321 (342)
T ss_dssp EETTTTEEEEEEE--E--TT-TTS-EEEEEEEETTTTEEEEEEEEE-EEESEEEEESSSS-EEEEEETTTTEEEEEETTT
T ss_pred eccccCeEEEEec--CCCCCCccCCceEEEEEECCCCeEEEEEeCC-CccceEEEccCCCcEEEEEcCCCCeEEEEeCcC
Confidence 6665555443211 111 11 34778899999999988742 3578999998865 66554 4689999999999
Q ss_pred CCCCCC
Q 019847 313 PSGDED 318 (335)
Q Consensus 313 ~~~~~~ 318 (335)
++....
T Consensus 322 Gk~~~~ 327 (342)
T PF06433_consen 322 GKLVRS 327 (342)
T ss_dssp --EEEE
T ss_pred CcEEee
Confidence 866543
No 345
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.53 E-value=0.00044 Score=58.96 Aligned_cols=119 Identities=11% Similarity=0.113 Sum_probs=83.7
Q ss_pred eeEEEecCCCCcEEEEec--CCCCCe----EEEEECCCCce----EEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCC
Q 019847 192 VKALAWSPHQVNVLATGG--GREDGC----IKIWNVQKGTC----IHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGN 261 (335)
Q Consensus 192 v~~~~~~~~~~~~~~~~~--g~~d~~----i~i~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (335)
..++.|+-..++.+.+-. -+.+|. -.+|+...++. +..++.+..+.+++++|+...++.| +.||
T Consensus 208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlG------C~Dg 281 (545)
T PF11768_consen 208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLG------CEDG 281 (545)
T ss_pred cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEE------ecCC
Confidence 456777765555444421 002332 34566654432 3455668899999999999999998 6799
Q ss_pred eEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCC
Q 019847 262 KLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDED 318 (335)
Q Consensus 262 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~ 318 (335)
.|.+||...+... .....-..+.++|+|+|.++++|+..|.+.+||+.-......
T Consensus 282 SiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi~~q 336 (545)
T PF11768_consen 282 SIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPIKMQ 336 (545)
T ss_pred eEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCcccee
Confidence 9999998766433 223334578899999999999999999999999986654443
No 346
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.52 E-value=0.00044 Score=58.48 Aligned_cols=225 Identities=14% Similarity=0.170 Sum_probs=150.5
Q ss_pred CCceEEEEcCCCCEEEEE-ECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeC---CCcEEEEecccCC
Q 019847 59 DYPTSVSWSHDAKTLAVG-YMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSK---DKSIINHDVRVSN 134 (335)
Q Consensus 59 ~~v~~~~~~~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~~~d~~~~~ 134 (335)
.....++.++.++.+... ..++.|.+.|..+.+........ .....+++++ +++.+..+.. ++.+.+.|..+..
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG-~~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~ 151 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVG-LGPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNK 151 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeec-cCCceEEECC-CCCEEEEEecccCCceEEEEeCCCCe
Confidence 345678888988855444 45689999998877776665533 3777899999 6655555544 6889999988766
Q ss_pred eeeEEeecCCCCEEEEEeecCCCEEEEEe-CCCeEEEEEccCCCccc-ceeeccCCCCCeeEEEecCCCCcEEEEecCCC
Q 019847 135 NVTSCIKAHSGEVCGLKWSNEGNLLASGG-DDNVVRIWERSKMSSSK-SLHRFTDHCGGVKALAWSPHQVNVLATGGGRE 212 (335)
Q Consensus 135 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~ 212 (335)
.... ...-..+ ..+++.|+++.+.... .++.|.+.|.+...... .......-......+.++|++.++.+...++.
T Consensus 152 ~~~~-~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~ 229 (381)
T COG3391 152 VTAT-IPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSG 229 (381)
T ss_pred EEEE-EecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCC
Confidence 5555 3333334 8899999999666655 78899999966532211 00001112233467899999998877765333
Q ss_pred CCeEEEEECCCCceEEE-eecCC-cEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCC---ceeEe
Q 019847 213 DGCIKIWNVQKGTCIHG-IDAKA-QICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNS---RILDL 287 (335)
Q Consensus 213 d~~i~i~d~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~---~i~~~ 287 (335)
++.+...|..++..... ..... ....+..+|+|+.+.+.. ...+.+.+.|..+............ .+..+
T Consensus 230 ~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~-----~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~ 304 (381)
T COG3391 230 SNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVAN-----SQGGTVSVIDGATDRVVKTGPTGNEALGEPVSI 304 (381)
T ss_pred CceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEe-----cCCCeEEEEeCCCCceeeeecccccccccceec
Confidence 47999999998877665 33222 567789999999987763 3368999999888777766543322 34445
Q ss_pred EEcCC
Q 019847 288 SQSPD 292 (335)
Q Consensus 288 ~~~~~ 292 (335)
++.+.
T Consensus 305 ~~~~~ 309 (381)
T COG3391 305 AISPL 309 (381)
T ss_pred cceee
Confidence 54443
No 347
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.51 E-value=0.00025 Score=55.40 Aligned_cols=203 Identities=15% Similarity=0.199 Sum_probs=112.1
Q ss_pred eecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEcc
Q 019847 95 NLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERS 174 (335)
Q Consensus 95 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 174 (335)
.+.+-...+..+.|.|.++.++++....+.|..++.+ ++.+.+......+..-.+++..++.++++.-.++.+.++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 4555566799999999567788888888888888864 444333322334668889998888777766568999999984
Q ss_pred CCCccc---ceee-----ccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCC---CceEEEee---------cCC
Q 019847 175 KMSSSK---SLHR-----FTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQK---GTCIHGID---------AKA 234 (335)
Q Consensus 175 ~~~~~~---~~~~-----~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~---~~~~~~~~---------~~~ 234 (335)
...... .... ...++..+-.++|+|.+..++++- +..-..+|.+.. ...+.... .-.
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~k---E~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAK---ERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVR 171 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEE---ESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEe---CCCChhhEEEccccCccceeeccccccccccceec
Confidence 322111 1111 113456689999999988888875 455555555543 22222111 123
Q ss_pred cEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCC---------CceeEeEEcCCCCEEEEEeCCCcE
Q 019847 235 QICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSN---------SRILDLSQSPDGLTVATAGADETI 305 (335)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~---------~~i~~~~~~~~~~~l~~~~~dg~v 305 (335)
.+.++.++|....++.- +..+..+..+| .+++++..+.-.. ...-.|+|.++|++.++ ++-+..
T Consensus 172 d~S~l~~~p~t~~lliL-----S~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlf 244 (248)
T PF06977_consen 172 DLSGLSYDPRTGHLLIL-----SDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLF 244 (248)
T ss_dssp ---EEEEETTTTEEEEE-----ETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEE
T ss_pred cccceEEcCCCCeEEEE-----ECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceE
Confidence 57889999987655432 37788898999 6666655433111 23678999999975554 455544
Q ss_pred EEE
Q 019847 306 RFW 308 (335)
Q Consensus 306 ~iw 308 (335)
++|
T Consensus 245 y~f 247 (248)
T PF06977_consen 245 YRF 247 (248)
T ss_dssp EEE
T ss_pred EEe
Confidence 443
No 348
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.50 E-value=0.0002 Score=61.10 Aligned_cols=223 Identities=14% Similarity=0.149 Sum_probs=113.7
Q ss_pred ccccceeeeecC-CceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeE
Q 019847 15 EDYYSKVIDWGR-NNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLV 93 (335)
Q Consensus 15 ~~~~~~~~~~~~-~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~ 93 (335)
.+.++..++++| +++++++.+|...|+.....+... . +.-....|.+.+ .+|+-..+++|.|+.--+.+..
T Consensus 31 ~~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~--~-----G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~~ 102 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKA--F-----GSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEVV 102 (443)
T ss_dssp -SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEE--E-----EE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-TT
T ss_pred CCcCCeeEEECCCCCEEEEEcCCEEEEEEccCCcccc--c-----CceeEEEEecCc-cEEEEECCCeEEEEEcCccccc
Confidence 356678899998 478888999999999844433222 1 223568899855 4666666888999743333332
Q ss_pred eeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEc
Q 019847 94 RNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWER 173 (335)
Q Consensus 94 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 173 (335)
+.++.. ..+..+- .|.+|...+.+ .|.+||+.+.+.+.+ .. -.+|..+.|++++.+++..+.+ .+.+++.
T Consensus 103 k~i~~~-~~~~~If----~G~LL~~~~~~-~i~~yDw~~~~~i~~-i~--v~~vk~V~Ws~~g~~val~t~~-~i~il~~ 172 (443)
T PF04053_consen 103 KSIKLP-FSVEKIF----GGNLLGVKSSD-FICFYDWETGKLIRR-ID--VSAVKYVIWSDDGELVALVTKD-SIYILKY 172 (443)
T ss_dssp -----S-S-EEEEE-----SSSEEEEETT-EEEEE-TTT--EEEE-ES--S-E-EEEEE-TTSSEEEEE-S--SEEEEEE
T ss_pred eEEcCC-cccceEE----cCcEEEEECCC-CEEEEEhhHcceeeE-Ee--cCCCcEEEEECCCCEEEEEeCC-eEEEEEe
Confidence 334321 2233332 26777776654 899999997765433 33 2248999999999999999855 6777764
Q ss_pred cCC------C--cccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCC
Q 019847 174 SKM------S--SSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHH 245 (335)
Q Consensus 174 ~~~------~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (335)
+.. + ....+.....-...|.+.+|..+ -++.+. .+.++. +..|+.-..-....++.-+.+.|..
T Consensus 173 ~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT----~~~lkY--l~~Ge~~~i~~ld~~~yllgy~~~~ 244 (443)
T PF04053_consen 173 NLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTT----SNHLKY--LVNGETGIIAHLDKPLYLLGYLPKE 244 (443)
T ss_dssp -HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-----TTEEEE--EETTEEEEEEE-SS--EEEEEETTT
T ss_pred cchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEc----CCeEEE--EEcCCcceEEEcCCceEEEEEEccC
Confidence 421 0 00123333222567899999876 344443 236666 4445543333334556666666655
Q ss_pred ceeeeeeeeeeecCCCeEEEEECC
Q 019847 246 KEILSGHGFSASGDGNKLCLWKYP 269 (335)
Q Consensus 246 ~~~~~~~~~~~~~~~~~i~i~d~~ 269 (335)
..+... ..++.+..+.+.
T Consensus 245 ~~ly~~------Dr~~~v~~~~ld 262 (443)
T PF04053_consen 245 NRLYLI------DRDGNVISYELD 262 (443)
T ss_dssp TEEEEE-------TT--EEEEE--
T ss_pred CEEEEE------ECCCCEEEEEEC
Confidence 555443 446666666554
No 349
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.50 E-value=3.2e-05 Score=69.64 Aligned_cols=144 Identities=16% Similarity=0.207 Sum_probs=101.6
Q ss_pred CCEEEEE-ECCCcEEEEeCCCceeEeeecccccc-eeEeeec----CCCCCEEEEeeCCCcEEEEecccCCe-eeEE-e-
Q 019847 70 AKTLAVG-YMDSKLQLWDAETSKLVRNLEGHHRR-VATSSWN----HWNGHILTSGSKDKSIINHDVRVSNN-VTSC-I- 140 (335)
Q Consensus 70 ~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~-v~~~~~~----~~~~~~l~~~~~dg~i~~~d~~~~~~-~~~~-~- 140 (335)
.++|+.- .....|+-.|+++|+.+.++..+... |..++-. ...+..-+.|-.++.+..||.+.... +... .
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k 572 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK 572 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence 3444443 34578999999999999999987654 5554332 11345567788899999999986542 2211 1
Q ss_pred -ecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEE
Q 019847 141 -KAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIW 219 (335)
Q Consensus 141 -~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~ 219 (335)
.......+|++-+.+| +||+|+.+|.||+||-- + ......+.+-..+|..+..+.||++++++| +..+.++
T Consensus 573 ~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~-g--~~AKT~lp~lG~pI~~iDvt~DGkwilaTc----~tyLlLi 644 (794)
T PF08553_consen 573 QYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRL-G--KRAKTALPGLGDPIIGIDVTADGKWILATC----KTYLLLI 644 (794)
T ss_pred ccccCCCceEEEecCCc-eEEEEeCCCcEEeeccc-c--hhhhhcCCCCCCCeeEEEecCCCcEEEEee----cceEEEE
Confidence 1233456777776665 79999999999999932 2 223334456678999999999999999997 6888888
Q ss_pred EC
Q 019847 220 NV 221 (335)
Q Consensus 220 d~ 221 (335)
+.
T Consensus 645 ~t 646 (794)
T PF08553_consen 645 DT 646 (794)
T ss_pred EE
Confidence 85
No 350
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.49 E-value=2.9e-06 Score=74.54 Aligned_cols=114 Identities=18% Similarity=0.386 Sum_probs=92.3
Q ss_pred CCCceEEEEcCCCCEEEEEE----CCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccC
Q 019847 58 DDYPTSVSWSHDAKTLAVGY----MDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVS 133 (335)
Q Consensus 58 ~~~v~~~~~~~~~~~l~~~~----~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~ 133 (335)
....+-..|+|...++|+++ ..|+|.|| .++|++-+... .+-.+++++|+| ..-.|+.|-.-|.+.+|...+.
T Consensus 15 davsti~SWHPsePlfAVA~fS~er~GSVtIf-adtGEPqr~Vt-~P~hatSLCWHp-e~~vLa~gwe~g~~~v~~~~~~ 91 (1416)
T KOG3617|consen 15 DAVSTISSWHPSEPLFAVASFSPERGGSVTIF-ADTGEPQRDVT-YPVHATSLCWHP-EEFVLAQGWEMGVSDVQKTNTT 91 (1416)
T ss_pred cccccccccCCCCceeEEEEecCCCCceEEEE-ecCCCCCcccc-cceehhhhccCh-HHHHHhhccccceeEEEecCCc
Confidence 33345568999999999886 46889998 46777655443 334567899999 8889999999999999998754
Q ss_pred CeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccC
Q 019847 134 NNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSK 175 (335)
Q Consensus 134 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 175 (335)
+ .......|..+|..+.|||+|..++++..-|.+.+|....
T Consensus 92 e-~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 92 E-THTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred e-eeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 4 4666678999999999999999999999999999998763
No 351
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.46 E-value=0.00067 Score=57.86 Aligned_cols=197 Identities=14% Similarity=0.107 Sum_probs=102.8
Q ss_pred cEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeE------EeecCCCCEEEEEeec
Q 019847 81 KLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTS------CIKAHSGEVCGLKWSN 154 (335)
Q Consensus 81 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~------~~~~~~~~i~~~~~~~ 154 (335)
.|+||+. .|+++..+.-..+.+.++.|.. ...|++-..||.+++||+. +..... ...-....+....+..
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~--~e~LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~ 137 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTD--DEELVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYK 137 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEECC--CCeEEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccCC
Confidence 4889985 4666776654558999999985 4556677799999999986 322000 0011111222223333
Q ss_pred CCCEEEEEeCCCeEEEEEccCCC-cccceeeccC-------CCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCce
Q 019847 155 EGNLLASGGDDNVVRIWERSKMS-SSKSLHRFTD-------HCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTC 226 (335)
Q Consensus 155 ~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~ 226 (335)
+|-.++ ..++.+.+..-.... ..+.+..... +........++.+....+... .++.+.+.+-...+
T Consensus 138 ~GivvL--t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~---~g~~i~~i~~~~~~- 211 (410)
T PF04841_consen 138 NGIVVL--TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLA---NGETIYIIDENSFK- 211 (410)
T ss_pred CCEEEE--CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEe---cCCEEEEEEccccc-
Confidence 442233 345555444311110 0011111110 000000022333333333322 34555544432221
Q ss_pred EEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCC-CCceeEeEEcCCCCE
Q 019847 227 IHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSS-NSRILDLSQSPDGLT 295 (335)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~ 295 (335)
.+...+++..++.||++++++.- ..+|.+.+....-.+.+.++... ......+.|.-++..
T Consensus 212 --~i~~~~~i~~iavSpng~~iAl~------t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav 273 (410)
T PF04841_consen 212 --QIDSDGPIIKIAVSPNGKFIALF------TDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAV 273 (410)
T ss_pred --cccCCCCeEEEEECCCCCEEEEE------ECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcE
Confidence 13345789999999999999865 45788888876655555555433 335567777665543
No 352
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.45 E-value=4.2e-06 Score=71.97 Aligned_cols=148 Identities=16% Similarity=0.150 Sum_probs=102.9
Q ss_pred CCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeee-cccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCe
Q 019847 57 EDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNL-EGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNN 135 (335)
Q Consensus 57 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~ 135 (335)
+...|.--+++..+++++.|+.-|.+++|+-..++....- .+..+.+..+..++ +..+++.|+..|.|.++-+....+
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~-~e~lvAagt~~g~V~v~ql~~~~p 110 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSS-VEYLVAAGTASGRVSVFQLNKELP 110 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecc-hhHhhhhhcCCceEEeehhhccCC
Confidence 3445555667778999999999999999997766543322 22445566666777 889999999999999998876443
Q ss_pred eeEE-----eecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccC-CCcccceeeccCCCCCeeEEEecCCCCcEEEE
Q 019847 136 VTSC-----IKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSK-MSSSKSLHRFTDHCGGVKALAWSPHQVNVLAT 207 (335)
Q Consensus 136 ~~~~-----~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 207 (335)
.... -..|...|++++|++++..+.+|...|+|..-.+.. ..-....+.+....+.|-.+..... +++++
T Consensus 111 ~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q~--~LLVS 186 (726)
T KOG3621|consen 111 RDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQS--YLLVS 186 (726)
T ss_pred CcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecccc--eehHh
Confidence 2221 123678899999999999999999999999887765 1111122333334566767666542 34443
No 353
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.44 E-value=4e-05 Score=65.04 Aligned_cols=163 Identities=17% Similarity=0.305 Sum_probs=102.7
Q ss_pred CeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEE-CCC--cEEEEeCCCceeEeeecccccceeEeeecCCC
Q 019847 36 PVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGY-MDS--KLQLWDAETSKLVRNLEGHHRRVATSSWNHWN 112 (335)
Q Consensus 36 ~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg--~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~ 112 (335)
..+.++++++++......+.++.. ..+|+|||++|+... .|| .|.+.|+.+++..+ +....+.-+.-.|+| +
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g~~~---~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~sp-d 292 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNGNNG---APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSP-D 292 (425)
T ss_pred ceEEEEeccCCccceeeccCCccC---CccCCCCCCEEEEEECCCCCccEEEEcCCCCccee-cccCCccccCccCCC-C
Confidence 469999999998877777766654 468999999887765 455 46666777666433 554444445778999 6
Q ss_pred CCEEE-EeeCCCc--EEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCC-Ce--EEEEEccCCCcccceeecc
Q 019847 113 GHILT-SGSKDKS--IINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDD-NV--VRIWERSKMSSSKSLHRFT 186 (335)
Q Consensus 113 ~~~l~-~~~~dg~--i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~--i~iwd~~~~~~~~~~~~~~ 186 (335)
++.++ +.+..|. |.+++.+.... ..+....+.-..-.|+|||++++..+.. |. |.+.|+.+... .+.+
T Consensus 293 G~~ivf~Sdr~G~p~I~~~~~~g~~~--~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~---~~~l- 366 (425)
T COG0823 293 GSKIVFTSDRGGRPQIYLYDLEGSQV--TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK---IRIL- 366 (425)
T ss_pred CCEEEEEeCCCCCcceEEECCCCCce--eEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCc---EEEc-
Confidence 66555 4455564 55555554332 3333333333377899999999887753 44 55556554332 2222
Q ss_pred CCCCCeeEEEecCCCCcEEEEec
Q 019847 187 DHCGGVKALAWSPHQVNVLATGG 209 (335)
Q Consensus 187 ~~~~~v~~~~~~~~~~~~~~~~~ 209 (335)
........-.|.|++..++...+
T Consensus 367 t~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 367 TSTYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred cccccCCCCCcCCCCceEEEecc
Confidence 23333445678888887777653
No 354
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.40 E-value=0.001 Score=57.25 Aligned_cols=248 Identities=12% Similarity=0.129 Sum_probs=128.5
Q ss_pred eEEEEcCCCCEEEEE-ECCC----cEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCC-----------CcE
Q 019847 62 TSVSWSHDAKTLAVG-YMDS----KLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKD-----------KSI 125 (335)
Q Consensus 62 ~~~~~~~~~~~l~~~-~~dg----~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----------g~i 125 (335)
....++|+|+++|.+ +..| .++++|+++++.+...-.. .....+.|.+ +++.|+....+ ..|
T Consensus 127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~-d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PKFSSVSWSD-DGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EESEEEEECT-TSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cccceEEEeC-CCCEEEEEEeCcccccccCCCCcEE
Confidence 357899999999876 3334 5999999999876543211 1222399999 66655544322 237
Q ss_pred EEEecccCCee-eEEeecCCCC--EEEEEeecCCCEEEEEeCC----CeEEEEEccCCC-cccceeeccCCCCCe-eEEE
Q 019847 126 INHDVRVSNNV-TSCIKAHSGE--VCGLKWSNEGNLLASGGDD----NVVRIWERSKMS-SSKSLHRFTDHCGGV-KALA 196 (335)
Q Consensus 126 ~~~d~~~~~~~-~~~~~~~~~~--i~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~-~~~~~~~~~~~~~~v-~~~~ 196 (335)
+.|.+.+.... ...+...... ...+..++++++++..... ..+.+.|+.... .......+......+ ..+.
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~ 284 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD 284 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence 77777655432 2333333322 6788899999988765433 347777876530 112222222233333 3333
Q ss_pred ecCCCCcEEEEecCCCCCeEEEEECCCCce---E-EEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCc
Q 019847 197 WSPHQVNVLATGGGREDGCIKIWNVQKGTC---I-HGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMT 272 (335)
Q Consensus 197 ~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~ 272 (335)
.. .+..++.+..+..++.|...++.+... . ..++......-..+...+.+++.... -.....|+++++..+.
T Consensus 285 ~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~---~~~~~~l~v~~~~~~~ 360 (414)
T PF02897_consen 285 HH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYR---ENGSSRLRVYDLDDGK 360 (414)
T ss_dssp EE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEE---ETTEEEEEEEETT-TE
T ss_pred cc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEE---ECCccEEEEEECCCCc
Confidence 33 444455554334567888888887652 2 22333332232333334445544321 1334578899988333
Q ss_pred eeeccc-CCCCceeEeEEcCCCCEEE-EEe---CCCcEEEEecCCCCC
Q 019847 273 KVGELQ-SSNSRILDLSQSPDGLTVA-TAG---ADETIRFWEAFGPSG 315 (335)
Q Consensus 273 ~~~~~~-~~~~~i~~~~~~~~~~~l~-~~~---~dg~v~iw~~~~~~~ 315 (335)
....+. ...+.|..+...+++..+. +.+ .-+.+.-||+.+++.
T Consensus 361 ~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 361 ESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp EEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred EEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 333332 2334456666555554332 222 125667777776543
No 355
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.37 E-value=0.00045 Score=53.93 Aligned_cols=191 Identities=17% Similarity=0.194 Sum_probs=121.5
Q ss_pred CeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeeccc-ccceeEeeecCCCCC
Q 019847 36 PVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGH-HRRVATSSWNHWNGH 114 (335)
Q Consensus 36 ~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~ 114 (335)
....+|..+-..........+-...+.++.|+|+.+.|++......-.|+=..+|+.++.+.-. -...-.+.|.. ++.
T Consensus 63 r~~~~~l~~y~~~i~akpi~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig-~n~ 141 (316)
T COG3204 63 RYIARYLLEYRARIDAKPILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIG-GNQ 141 (316)
T ss_pred chhhhccCCceEEEeccccccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEec-CCE
Confidence 3355555443332222223455566999999999999998887777777766778888876521 22344567776 677
Q ss_pred EEEEeeCCCcEEEEecccCCeeeEE------e---ecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeec
Q 019847 115 ILTSGSKDKSIINHDVRVSNNVTSC------I---KAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRF 185 (335)
Q Consensus 115 ~l~~~~~dg~i~~~d~~~~~~~~~~------~---~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 185 (335)
+.++--.++.+.++.+......... + .......-.++|.|..+.|..+=+-.-+.||........-.....
T Consensus 142 fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~ 221 (316)
T COG3204 142 FVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHAS 221 (316)
T ss_pred EEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccc
Confidence 7777778888888887654322111 1 112456778999998888888877777777776643322222211
Q ss_pred cCC-------CCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEe
Q 019847 186 TDH-------CGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGI 230 (335)
Q Consensus 186 ~~~-------~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~ 230 (335)
..+ -..+.++.|++....+++.+. +++.+.-.|.. |..+..+
T Consensus 222 ~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~--ESr~l~Evd~~-G~~~~~l 270 (316)
T COG3204 222 LDPTADRDLFVLDVSGLEFNAITNSLLVLSD--ESRRLLEVDLS-GEVIELL 270 (316)
T ss_pred cCcccccceEeeccccceecCCCCcEEEEec--CCceEEEEecC-CCeeeeE
Confidence 112 123678889887777888775 77888777754 4444333
No 356
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.35 E-value=0.0013 Score=56.18 Aligned_cols=193 Identities=12% Similarity=0.130 Sum_probs=105.3
Q ss_pred eEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCcee-------EeeecccccceeEeeec
Q 019847 37 VLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKL-------VRNLEGHHRRVATSSWN 109 (335)
Q Consensus 37 ~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-------~~~~~~~~~~v~~~~~~ 109 (335)
.|.+|+.. |+....+.+.. +.|.++.|+.+.+ |++-..||.+++||+. |+. +.........+....+.
T Consensus 62 ~I~iys~s-G~ll~~i~w~~--~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~ 136 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDS--GRIVGMGWTDDEE-LVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFY 136 (410)
T ss_pred EEEEECCC-CCEeEEEEECC--CCEEEEEECCCCe-EEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccC
Confidence 58888864 44555566654 7899999988654 5566689999999986 333 11111111222222232
Q ss_pred CCCCCEEEEeeCCCcEEEEecccCCeeeEEeec--------CCC-CEEE-EEeecCCCEEEEEeCCCeEEEEEccCCCcc
Q 019847 110 HWNGHILTSGSKDKSIINHDVRVSNNVTSCIKA--------HSG-EVCG-LKWSNEGNLLASGGDDNVVRIWERSKMSSS 179 (335)
Q Consensus 110 ~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~--------~~~-~i~~-~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 179 (335)
. +| ++.-..++.+.+.+-.......+.+.. +.. .... ..++.+....+....++.+.+.+-...
T Consensus 137 ~-~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~--- 210 (410)
T PF04841_consen 137 K-NG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSF--- 210 (410)
T ss_pred C-CC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccc---
Confidence 2 33 333334444444432211111111100 000 0111 224445555555555666665542221
Q ss_pred cceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecC--CcEeEEEeCCCCce
Q 019847 180 KSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAK--AQICGLEWNRHHKE 247 (335)
Q Consensus 180 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 247 (335)
.. . ...+++..++.||+++.+.... .+|.+.+.+..-.+.+..+... .....+.|..+...
T Consensus 211 ~~---i-~~~~~i~~iavSpng~~iAl~t---~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav 273 (410)
T PF04841_consen 211 KQ---I-DSDGPIIKIAVSPNGKFIALFT---DSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAV 273 (410)
T ss_pred cc---c-cCCCCeEEEEECCCCCEEEEEE---CCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcE
Confidence 11 1 1346899999999997655544 6899999987766777666654 56778888766443
No 357
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.32 E-value=0.00083 Score=56.38 Aligned_cols=232 Identities=16% Similarity=0.207 Sum_probs=128.3
Q ss_pred cccceeeeecC-CceEEEecCCeEEEEEecCCceeeEEeecCC----------------CCCceEEEEcCCCCEEEEEEC
Q 019847 16 DYYSKVIDWGR-NNVLAVALGPVLFLWKWENGKVKKLLQVPGE----------------DDYPTSVSWSHDAKTLAVGYM 78 (335)
Q Consensus 16 ~~~~~~~~~~~-~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~----------------~~~v~~~~~~~~~~~l~~~~~ 78 (335)
........|+| +..++...++.|++++..+++..++ +..+. -+.-..+.||||+++||....
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~~l-T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQETQL-TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEEEES-ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred ccccccceeecCCCeeEEEecCceEEEECCCCCeEEe-ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 34566688998 4678888899999999887754333 22220 122367889999999988643
Q ss_pred C-Cc-----------------------------------EEEEeCCCceeEe-e-e---cccccceeEeeecCCCCCEEE
Q 019847 79 D-SK-----------------------------------LQLWDAETSKLVR-N-L---EGHHRRVATSSWNHWNGHILT 117 (335)
Q Consensus 79 d-g~-----------------------------------i~iw~~~~~~~~~-~-~---~~~~~~v~~~~~~~~~~~~l~ 117 (335)
| .. +.|+|+.+++... . . .....-+..+.|.+ ++..|+
T Consensus 121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~-d~~~l~ 199 (353)
T PF00930_consen 121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSP-DGKRLW 199 (353)
T ss_dssp E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEE-TTEEEE
T ss_pred CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecC-CCcEEE
Confidence 2 22 3334444443211 0 1 12334677888888 666333
Q ss_pred Ee--eCCC---cEEEEecccCCeeeEEeecCCCCE---EEEEee-cCC-CEEEEEeCCCeEEEEEccCCCcccceeeccC
Q 019847 118 SG--SKDK---SIINHDVRVSNNVTSCIKAHSGEV---CGLKWS-NEG-NLLASGGDDNVVRIWERSKMSSSKSLHRFTD 187 (335)
Q Consensus 118 ~~--~~dg---~i~~~d~~~~~~~~~~~~~~~~~i---~~~~~~-~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 187 (335)
.. .++. .+.++|..++.............| ....+. +++ .++.....||.-.+|-++... .....+..
T Consensus 200 ~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~--~~~~~lT~ 277 (353)
T PF00930_consen 200 VQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDG--GKPRQLTS 277 (353)
T ss_dssp EEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTS--SEEEESS-
T ss_pred EEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccc--cceecccc
Confidence 32 2222 456667765443222222222222 245554 544 455555677765555444321 12334444
Q ss_pred CCCCee-EEEecCCCCcEEEEecCC--CCCeEEEEECCCCceEEEeecCCcE-eEEEeCCCCceeeee
Q 019847 188 HCGGVK-ALAWSPHQVNVLATGGGR--EDGCIKIWNVQKGTCIHGIDAKAQI-CGLEWNRHHKEILSG 251 (335)
Q Consensus 188 ~~~~v~-~~~~~~~~~~~~~~~~g~--~d~~i~i~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 251 (335)
..-.|. -+.++++++.++.++.+. ....++..++..+.....+...... ..+.|+|++++++..
T Consensus 278 G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 278 GDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDT 345 (353)
T ss_dssp SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEE
T ss_pred CceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEE
Confidence 455564 477899988888777521 2346667777734445566554444 499999999998764
No 358
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.28 E-value=0.0024 Score=56.38 Aligned_cols=285 Identities=13% Similarity=0.069 Sum_probs=157.2
Q ss_pred CCceEEEecCCeEEEEEecCCceeeEEeecCCCC--Cc-------eEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeee
Q 019847 26 RNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDD--YP-------TSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNL 96 (335)
Q Consensus 26 ~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~--~v-------~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 96 (335)
++.+++++.++.|+-.|.++|+.+-.+....... .. ..+++ .+..++.++.|+.+.-.|.++|+.+...
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 4667777788899999999998765544322111 10 01122 2356778888999999999999998776
Q ss_pred ccccc----ceeE-eeecCCCCCEEEEee------CCCcEEEEecccCCeeeEEeecCC---------------------
Q 019847 97 EGHHR----RVAT-SSWNHWNGHILTSGS------KDKSIINHDVRVSNNVTSCIKAHS--------------------- 144 (335)
Q Consensus 97 ~~~~~----~v~~-~~~~~~~~~~l~~~~------~dg~i~~~d~~~~~~~~~~~~~~~--------------------- 144 (335)
..... .+++ -... ++ .++.+. .+|.|..+|.++++.+-+......
T Consensus 147 ~~~~~~~~~~~tssP~v~--~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw 223 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLVV--KG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTW 223 (527)
T ss_pred ccccccccccccCCcEEE--CC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCC
Confidence 53211 1111 1111 33 444443 268899999988776433211110
Q ss_pred ---------CCE-EEEEeecCCCEEEEEeCC-----C-----------eEEEEEccCCCcccceeeccCCC-------CC
Q 019847 145 ---------GEV-CGLKWSNEGNLLASGGDD-----N-----------VVRIWERSKMSSSKSLHRFTDHC-------GG 191 (335)
Q Consensus 145 ---------~~i-~~~~~~~~~~~l~~~~~d-----g-----------~i~iwd~~~~~~~~~~~~~~~~~-------~~ 191 (335)
..+ ..+++.|+..++..+... + .|.-.|+++++..-..+. ..|. .+
T Consensus 224 ~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~-~~~D~wD~d~~~~ 302 (527)
T TIGR03075 224 PGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQT-TPHDEWDYDGVNE 302 (527)
T ss_pred CCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeC-CCCCCccccCCCC
Confidence 111 134566656666665522 2 455556555433222221 1111 11
Q ss_pred eeEEEecCCCC--cEEEEecCCCCCeEEEEECCCCceEEEeec------------C--CcE-------------------
Q 019847 192 VKALAWSPHQV--NVLATGGGREDGCIKIWNVQKGTCIHGIDA------------K--AQI------------------- 236 (335)
Q Consensus 192 v~~~~~~~~~~--~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~------------~--~~~------------------- 236 (335)
..-+....+++ .+++.+. .+|.+++.|-++|+.+...+. . .++
T Consensus 303 p~l~d~~~~G~~~~~v~~~~--K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~ 380 (527)
T TIGR03075 303 MILFDLKKDGKPRKLLAHAD--RNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRPIEVPEARSADGKKGKPVGVC 380 (527)
T ss_pred cEEEEeccCCcEEEEEEEeC--CCceEEEEECCCCceeccccccCCcccccccCCCCCCCccChhhCcCCCCCCCeeEEC
Confidence 12233334554 4666655 999999999999988622100 0 000
Q ss_pred ---------eEEEeCCCCceeeeeeeeee---------------------------ecCCCeEEEEECCCCceeecccCC
Q 019847 237 ---------CGLEWNRHHKEILSGHGFSA---------------------------SGDGNKLCLWKYPNMTKVGELQSS 280 (335)
Q Consensus 237 ---------~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~i~i~d~~~~~~~~~~~~~ 280 (335)
..++++|+...++....-.. ...-+.+.-+|+.+++..-+.+..
T Consensus 381 Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk~~W~~~~~ 460 (527)
T TIGR03075 381 PGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDPITGKIVWEHKED 460 (527)
T ss_pred CCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeCCCCceeeEecCC
Confidence 12456665555543311000 011356888898888887665432
Q ss_pred CCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCc
Q 019847 281 NSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDEDS 319 (335)
Q Consensus 281 ~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~ 319 (335)
.....+. ..-.+.+++.++.||.++.+|..+++..-+.
T Consensus 461 ~p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~ 498 (527)
T TIGR03075 461 FPLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKF 498 (527)
T ss_pred CCCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEE
Confidence 2211222 1124457778888999999999998776543
No 359
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=8.9e-06 Score=69.17 Aligned_cols=95 Identities=17% Similarity=0.276 Sum_probs=81.4
Q ss_pred CCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeeccccccee-EeeecCCCCCEEEEeeCCCcEEEEecccCCee
Q 019847 58 DDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVA-TSSWNHWNGHILTSGSKDKSIINHDVRVSNNV 136 (335)
Q Consensus 58 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~ 136 (335)
...+.-+.|+|.-..+|.+..+|.+.+..++ .+.+..+.-+...++ +++|.| +|+.|+.|-.||+|++.|.+++..+
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCCce
Confidence 3457889999999999999999999999988 777888886777777 999999 8999999999999999999988876
Q ss_pred eEEeecCCCCEEEEEeec
Q 019847 137 TSCIKAHSGEVCGLKWSN 154 (335)
Q Consensus 137 ~~~~~~~~~~i~~~~~~~ 154 (335)
..........|.++-|.+
T Consensus 98 ~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWDR 115 (665)
T ss_pred eccccccccchheeeccc
Confidence 665555667788888864
No 360
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.20 E-value=0.0013 Score=55.55 Aligned_cols=211 Identities=13% Similarity=0.128 Sum_probs=111.4
Q ss_pred ceeEeeecCCCCCEEEEeeCCCcEEEEecccCC------------------------------------------eeeEE
Q 019847 102 RVATSSWNHWNGHILTSGSKDKSIINHDVRVSN------------------------------------------NVTSC 139 (335)
Q Consensus 102 ~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~------------------------------------------~~~~~ 139 (335)
.|+.+.|.+ +...|++|...|.|.+|.....+ .+...
T Consensus 3 ~v~~vs~a~-~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAP-ETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEET-TTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecC-CCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 477888888 77788888888888888653221 11122
Q ss_pred eecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccC------CCCCeeEEEecC-----CC--CcEEE
Q 019847 140 IKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTD------HCGGVKALAWSP-----HQ--VNVLA 206 (335)
Q Consensus 140 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~------~~~~v~~~~~~~-----~~--~~~~~ 206 (335)
+....++|++++.|. =.++|.|..+|.+.|.|+|.+..... ..+.. ....++++.|.- |+ .-++.
T Consensus 82 ~~~~~g~vtal~~S~-iGFvaigy~~G~l~viD~RGPavI~~-~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 82 LDAKQGPVTALKNSD-IGFVAIGYESGSLVVIDLRGPAVIYN-ENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp E---S-SEEEEEE-B-TSEEEEEETTSEEEEEETTTTEEEEE-EEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eeccCCcEeEEecCC-CcEEEEEecCCcEEEEECCCCeEEee-ccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 334578899999874 45899999999999999986432111 11111 344577888751 22 12344
Q ss_pred EecCCCCCeEEEEECCC---CceE----EEe-ecCCcEeEEE-eCCCCceeeee--------------eeeeeecCCCeE
Q 019847 207 TGGGREDGCIKIWNVQK---GTCI----HGI-DAKAQICGLE-WNRHHKEILSG--------------HGFSASGDGNKL 263 (335)
Q Consensus 207 ~~~g~~d~~i~i~d~~~---~~~~----~~~-~~~~~~~~~~-~~~~~~~~~~~--------------~~~~~~~~~~~i 263 (335)
+|. ..|.+.+|.+.- +... ... ....++..+. ++.+...-+.. ..+.....+..+
T Consensus 160 vGT--n~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~i 237 (395)
T PF08596_consen 160 VGT--NSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDI 237 (395)
T ss_dssp EEE--TTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEE
T ss_pred EEe--CCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccce
Confidence 443 789999998741 2111 111 2234444433 22221111110 113334558999
Q ss_pred EEEECCCCceeecccCCCCceeEeEE-----cCCCCEEEEEeCCCcEEEEecCCCCCCC
Q 019847 264 CLWKYPNMTKVGELQSSNSRILDLSQ-----SPDGLTVATAGADETIRFWEAFGPSGDE 317 (335)
Q Consensus 264 ~i~d~~~~~~~~~~~~~~~~i~~~~~-----~~~~~~l~~~~~dg~v~iw~~~~~~~~~ 317 (335)
+++...+.+.........-....+.+ ...+..|++-..+|.+++|.+..-++..
T Consensus 238 rv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~ 296 (395)
T PF08596_consen 238 RVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIK 296 (395)
T ss_dssp EEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEE
T ss_pred EEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhh
Confidence 99999887776554432222334444 2356778888999999999998755443
No 361
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.15 E-value=0.0016 Score=53.94 Aligned_cols=132 Identities=15% Similarity=0.149 Sum_probs=87.1
Q ss_pred CeEEEEEecCC-----ceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCce-eEeeec-ccccceeEeee
Q 019847 36 PVLFLWKWENG-----KVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSK-LVRNLE-GHHRRVATSSW 108 (335)
Q Consensus 36 ~~i~vw~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~-~~~~~v~~~~~ 108 (335)
|.|.++++... ++..... ....++|++++-- ++ +|+++. .+.|.+|++...+ ....-. .....+.++..
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~-~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~ 137 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHS-TEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV 137 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEE-EEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE
T ss_pred cEEEEEEEEcccccceEEEEEEE-EeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEec
Confidence 88999999884 3333333 2346788888765 33 465554 5789999998777 433322 12335666665
Q ss_pred cCCCCCEEEEeeCCCcEEEEecccCCe-eeEE-eecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEcc
Q 019847 109 NHWNGHILTSGSKDKSIINHDVRVSNN-VTSC-IKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERS 174 (335)
Q Consensus 109 ~~~~~~~l~~~~~dg~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 174 (335)
.+++++.|.....+.++..+.... +... .......++++.+-++++.++.+..+|.+.++...
T Consensus 138 ---~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 138 ---FKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp ---ETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred ---cccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 456999999989898886654333 2222 22235568888888666799999999999999876
No 362
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=98.14 E-value=0.0006 Score=45.27 Aligned_cols=100 Identities=15% Similarity=0.188 Sum_probs=69.4
Q ss_pred ceEEEEcC---CC-CEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCee
Q 019847 61 PTSVSWSH---DA-KTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNV 136 (335)
Q Consensus 61 v~~~~~~~---~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~ 136 (335)
|+++++.. +| +.|++|+.|..|++|+ ..+.+.++. ....|+++.-.. +..|+.+..+|+|-+|+-.. .+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~-e~~~v~~L~~~~--~~~F~Y~l~NGTVGvY~~~~--Rl 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEIT-ETDKVTSLCSLG--GGRFAYALANGTVGVYDRSQ--RL 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEe-cccceEEEEEcC--CCEEEEEecCCEEEEEeCcc--ee
Confidence 56666654 32 5899999999999997 346777776 446777777764 47899999999999998632 22
Q ss_pred eEEeecCCCCEEEEEeec-CC---CEEEEEeCCCeEE
Q 019847 137 TSCIKAHSGEVCGLKWSN-EG---NLLASGGDDNVVR 169 (335)
Q Consensus 137 ~~~~~~~~~~i~~~~~~~-~~---~~l~~~~~dg~i~ 169 (335)
.+.. .+..+.++++.. ++ ..|++|-.+|.|-
T Consensus 75 WRiK--SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 75 WRIK--SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeec--cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 2322 233366666654 22 3788888888774
No 363
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.08 E-value=0.0012 Score=59.97 Aligned_cols=133 Identities=17% Similarity=0.170 Sum_probs=94.5
Q ss_pred cCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCC-------CCEEEEEECCCcEEEEeCCCc--eeEee-e--ccccc
Q 019847 34 LGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHD-------AKTLAVGYMDSKLQLWDAETS--KLVRN-L--EGHHR 101 (335)
Q Consensus 34 ~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~-------~~~l~~~~~dg~i~iw~~~~~--~~~~~-~--~~~~~ 101 (335)
..+.|+-.|++.|++.....+.. ..+|.. +.|+ ....+.|-.+..+..||.+-. +++.. . .....
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~~-~~~v~~--~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~ 578 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVHD-DIPVVD--IAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKN 578 (794)
T ss_pred CCCceEEEecCCCcEEEEeecCC-CcceeE--ecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCC
Confidence 35789999999999988777632 223444 4443 335677778889999998753 23321 1 12334
Q ss_pred ceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEc
Q 019847 102 RVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWER 173 (335)
Q Consensus 102 ~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 173 (335)
...|++-. ...+||+|+.+|.|++||-- +......+.+...+|..|..+.||+++++.+ +..+.+++.
T Consensus 579 ~Fs~~aTt--~~G~iavgs~~G~IRLyd~~-g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 579 NFSCFATT--EDGYIAVGSNKGDIRLYDRL-GKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred CceEEEec--CCceEEEEeCCCcEEeeccc-chhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 56666665 56789999999999999953 4445566777889999999999999998777 567778775
No 364
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.07 E-value=0.0071 Score=53.51 Aligned_cols=251 Identities=14% Similarity=0.131 Sum_probs=137.4
Q ss_pred eeecCCceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcC--CCCEEEEEEC------CCcEEEEeCCCceeE
Q 019847 22 IDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSH--DAKTLAVGYM------DSKLQLWDAETSKLV 93 (335)
Q Consensus 22 ~~~~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~------dg~i~iw~~~~~~~~ 93 (335)
+...++.+++++.++.+.-.|.++|+..-......+... ..+.-+| .+..++++.. +|.|.-+|.++|+.+
T Consensus 116 ~av~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~-~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~l 194 (527)
T TIGR03075 116 VALYDGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAG-YTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLV 194 (527)
T ss_pred ceEECCEEEEEcCCCEEEEEECCCCCEEeeccccccccc-ccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCcee
Confidence 345567788888999999999999998655544322211 1111122 2335555542 689999999999988
Q ss_pred eeeccccc-------------------------------cee-EeeecCCCCCEEEEeeCC-----C-----------cE
Q 019847 94 RNLEGHHR-------------------------------RVA-TSSWNHWNGHILTSGSKD-----K-----------SI 125 (335)
Q Consensus 94 ~~~~~~~~-------------------------------~v~-~~~~~~~~~~~l~~~~~d-----g-----------~i 125 (335)
..+..-.. .+. .+.+.+ ...+++.+..+ + .|
T Consensus 195 W~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~-~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~ 273 (527)
T TIGR03075 195 WRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDP-ETNLIYFGTGNPSPWNSHLRPGDNLYTSSI 273 (527)
T ss_pred EeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcC-CCCeEEEeCCCCCCCCCCCCCCCCccceeE
Confidence 76543211 111 224555 45555555422 2 56
Q ss_pred EEEecccCCeeeEEee-cCC-------CCEEEEEeecCCC---EEEEEeCCCeEEEEEccCCCcccce-----eec----
Q 019847 126 INHDVRVSNNVTSCIK-AHS-------GEVCGLKWSNEGN---LLASGGDDNVVRIWERSKMSSSKSL-----HRF---- 185 (335)
Q Consensus 126 ~~~d~~~~~~~~~~~~-~~~-------~~i~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~-----~~~---- 185 (335)
.-.|+++++..-.... .|. ....-+....+|+ .++.+..+|.+++.|-++++..... ...
T Consensus 274 vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~ 353 (527)
T TIGR03075 274 VARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGV 353 (527)
T ss_pred EEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCccccccc
Confidence 6777777765433211 121 1111222224565 7889999999999998765431000 000
Q ss_pred cCCC---------------------------CC--eeEEEecCCCCcEEEEecC--------------------------
Q 019847 186 TDHC---------------------------GG--VKALAWSPHQVNVLATGGG-------------------------- 210 (335)
Q Consensus 186 ~~~~---------------------------~~--v~~~~~~~~~~~~~~~~~g-------------------------- 210 (335)
.... +. -..++++|+...+++-..-
T Consensus 354 ~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 433 (527)
T TIGR03075 354 DLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIK 433 (527)
T ss_pred CCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccC
Confidence 0000 00 0124556655433332210
Q ss_pred ----CCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCC
Q 019847 211 ----REDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSS 280 (335)
Q Consensus 211 ----~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~ 280 (335)
..-|.|.-+|+.+++..-..+...+...-...-.+.. +..++.+|.++.+|.++++.+.+++-.
T Consensus 434 p~~~~~~g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~l------vf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 434 PPPDDHMGSLIAWDPITGKIVWEHKEDFPLWGGVLATAGDL------VFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred CCCCCCceeEEEEeCCCCceeeEecCCCCCCCcceEECCcE------EEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 0125678888888888776654432111111112222 233467999999999999999887654
No 365
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=98.02 E-value=1.4e-05 Score=42.33 Aligned_cols=38 Identities=29% Similarity=0.562 Sum_probs=32.9
Q ss_pred ceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEe
Q 019847 272 TKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWE 309 (335)
Q Consensus 272 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~ 309 (335)
++...+..|...|.++.|.+++.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 34555667888999999999999999999999999996
No 366
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.99 E-value=0.00028 Score=59.36 Aligned_cols=144 Identities=15% Similarity=0.180 Sum_probs=100.0
Q ss_pred CCCEEE-EEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCC-------CEEEEeeCCCcEEEEecccCCe-eeEE
Q 019847 69 DAKTLA-VGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNG-------HILTSGSKDKSIINHDVRVSNN-VTSC 139 (335)
Q Consensus 69 ~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~~l~~~~~dg~i~~~d~~~~~~-~~~~ 139 (335)
+.++|+ .+.....++-.|++.|+.+.+++-+.. |.-+.+.| +. ..-+.|-.+..|.-||.+-... .+..
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~-d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~ 421 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITP-DFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAV 421 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccC-CcchhcccccccEEeecCCceEEecccccCcceeee
Confidence 444444 444556788889999999999987665 77777766 32 2234567788999999985443 2222
Q ss_pred eecCC----CCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCe
Q 019847 140 IKAHS----GEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGC 215 (335)
Q Consensus 140 ~~~~~----~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~ 215 (335)
.+.|. ....|.+-..+ .++++|+.+|.|++||-- + ......+.+...+|..+..+.+|+++++++ +..
T Consensus 422 ~q~kqy~~k~nFsc~aTT~s-G~IvvgS~~GdIRLYdri-~--~~AKTAlPgLG~~I~hVdvtadGKwil~Tc----~ty 493 (644)
T KOG2395|consen 422 VQSKQYSTKNNFSCFATTES-GYIVVGSLKGDIRLYDRI-G--RRAKTALPGLGDAIKHVDVTADGKWILATC----KTY 493 (644)
T ss_pred eeccccccccccceeeecCC-ceEEEeecCCcEEeehhh-h--hhhhhcccccCCceeeEEeeccCcEEEEec----ccE
Confidence 23332 33455554444 489999999999999952 2 222334566778899999999999999986 788
Q ss_pred EEEEECC
Q 019847 216 IKIWNVQ 222 (335)
Q Consensus 216 i~i~d~~ 222 (335)
+.+.++.
T Consensus 494 LlLi~t~ 500 (644)
T KOG2395|consen 494 LLLIDTL 500 (644)
T ss_pred EEEEEEe
Confidence 8888764
No 367
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.98 E-value=0.0063 Score=54.34 Aligned_cols=204 Identities=14% Similarity=0.171 Sum_probs=112.3
Q ss_pred CCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEee------CCC--cEEEEecccCCeeeEEeecCCCCEEEE
Q 019847 79 DSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGS------KDK--SIINHDVRVSNNVTSCIKAHSGEVCGL 150 (335)
Q Consensus 79 dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~------~dg--~i~~~d~~~~~~~~~~~~~~~~~i~~~ 150 (335)
+|.+.-.+-..-..+.-..+....+...+.+| +++.++... .|. .+.+++. +........+ ...+.-
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~--gg~~~~lt~g--~~~t~P 402 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPL--GGVAVQVLEG--HSLTRP 402 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeC--CCcceeeecC--CCCCCc
Confidence 66665554322223322223334678889999 777766554 243 4555554 3322332222 237888
Q ss_pred EeecCCCEEEEEeCC------------CeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEE
Q 019847 151 KWSNEGNLLASGGDD------------NVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKI 218 (335)
Q Consensus 151 ~~~~~~~~l~~~~~d------------g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i 218 (335)
.|+|+|+.+++.... +.+.+.+++.+.. .. ...+.|..+.|+|||.++++.. ++.|++
T Consensus 403 sWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~----~~--~~~g~Issl~wSpDG~RiA~i~----~g~v~V 472 (591)
T PRK13616 403 SWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAV----AS--RVPGPISELQLSRDGVRAAMII----GGKVYL 472 (591)
T ss_pred eECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchh----hh--ccCCCcCeEEECCCCCEEEEEE----CCEEEE
Confidence 999998888777533 2232223322111 10 2346799999999999888875 477777
Q ss_pred ---EECCCCce-E---EEee--cCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccC--CCCceeEe
Q 019847 219 ---WNVQKGTC-I---HGID--AKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQS--SNSRILDL 287 (335)
Q Consensus 219 ---~d~~~~~~-~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~--~~~~i~~~ 287 (335)
-....|+. + ..+. ....+..+.|.+++..+ ++. .+.+..+...++...... .+.. ...++..+
T Consensus 473 a~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~----~~~~~~v~~v~vDG~~~~-~~~~~n~~~~v~~v 546 (591)
T PRK13616 473 AVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGR----SDPEHPVWYVNLDGSNSD-ALPSRNLSAPVVAV 546 (591)
T ss_pred EEEEeCCCCceeecccEEeecccCCccccceEecCCEEE-EEe----cCCCCceEEEecCCcccc-ccCCCCccCceEEE
Confidence 55445541 1 1111 12336889999999855 331 133444555555433322 2222 24567788
Q ss_pred EEcCCCCEEEEEeCCCcE
Q 019847 288 SQSPDGLTVATAGADETI 305 (335)
Q Consensus 288 ~~~~~~~~l~~~~~dg~v 305 (335)
+-+++ -++....+|.+
T Consensus 547 aa~~~--~iyv~~~~g~~ 562 (591)
T PRK13616 547 AASPS--TVYVTDARAVL 562 (591)
T ss_pred ecCCc--eEEEEcCCceE
Confidence 87764 45556666643
No 368
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.97 E-value=0.0052 Score=49.95 Aligned_cols=200 Identities=13% Similarity=0.086 Sum_probs=114.4
Q ss_pred eecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeecc
Q 019847 107 SWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFT 186 (335)
Q Consensus 107 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 186 (335)
.|.+..+.++.+--..+.|.-|+..++.. ..+ .+.+.+.++..-..+..|+++.. .+.+++.+.......+....
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~--~~~-~~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~ 105 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKK--RVF-PSPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPE 105 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCce--EEE-ECCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEecccc
Confidence 46664444666767788888898875543 222 23444455555445555555542 35666654332212222211
Q ss_pred -C-CCCCeeEEEecCCCCcEEEEec----C----CCCCeEEEEECCCCceEEEeec-CCcEeEEEeCCCCceeeeeeeee
Q 019847 187 -D-HCGGVKALAWSPHQVNVLATGG----G----REDGCIKIWNVQKGTCIHGIDA-KAQICGLEWNRHHKEILSGHGFS 255 (335)
Q Consensus 187 -~-~~~~v~~~~~~~~~~~~~~~~~----g----~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 255 (335)
+ .....+.+...|+|...+.+.+ + ..-|.++.+|. .+..++.+.. -...+.++|||+++.++...
T Consensus 106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aD--- 181 (307)
T COG3386 106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVAD--- 181 (307)
T ss_pred CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEe---
Confidence 1 1234567889999865554432 0 11243444443 4555555444 34567899999999887653
Q ss_pred eecCCCeEEEEECCC--Cce-----eecccCCCCceeEeEEcCCCCEEEEEeCCC-cEEEEecCCCCCCCC
Q 019847 256 ASGDGNKLCLWKYPN--MTK-----VGELQSSNSRILDLSQSPDGLTVATAGADE-TIRFWEAFGPSGDED 318 (335)
Q Consensus 256 ~~~~~~~i~i~d~~~--~~~-----~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~v~iw~~~~~~~~~~ 318 (335)
+..+.|.-|++.. +.. ...+....+..-.++...+|.+.+++..+| .|.+|+.+ ++....
T Consensus 182 --T~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~ 249 (307)
T COG3386 182 --TPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGE 249 (307)
T ss_pred --CCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEE
Confidence 4568888887752 111 122223445566788888898876555554 89999988 444333
No 369
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.96 E-value=0.0036 Score=55.83 Aligned_cols=195 Identities=13% Similarity=0.092 Sum_probs=102.8
Q ss_pred CCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEE------CCC--cEEEEeCCCceeEeeecccccceeEe
Q 019847 35 GPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGY------MDS--KLQLWDAETSKLVRNLEGHHRRVATS 106 (335)
Q Consensus 35 ~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~dg--~i~iw~~~~~~~~~~~~~~~~~v~~~ 106 (335)
+|.+.-.+ .+...+.-...+....+...+++|+|+.++... .|+ .|.+++.. +.. ..+.. ....+.-
T Consensus 328 ~G~l~~~~--~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~-g~~~t~P 402 (591)
T PRK13616 328 DGSLVSVD--GQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE-GHSLTRP 402 (591)
T ss_pred CCeEEEec--CCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec-CCCCCCc
Confidence 66664433 333222222223334678999999999887765 243 45555542 222 33322 2247888
Q ss_pred eecCCCCCEEEEeeCC------------CcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEcc
Q 019847 107 SWNHWNGHILTSGSKD------------KSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERS 174 (335)
Q Consensus 107 ~~~~~~~~~l~~~~~d------------g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 174 (335)
.|+| ++..+++.... +.+.+.+++.+.. .. ...+.|..+.|||||..++... +|.|++=-+.
T Consensus 403 sWsp-DG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~-~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vv 476 (591)
T PRK13616 403 SWSL-DADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAV-AS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVE 476 (591)
T ss_pred eECC-CCCceEEEecCcceEEEeccCCCceEEEEeccCchh-hh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEE
Confidence 9999 77766665432 2333334332221 11 3356799999999999998876 5777773332
Q ss_pred CCCccc-ce---eecc-CCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec---CCcEeEEEeCC
Q 019847 175 KMSSSK-SL---HRFT-DHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA---KAQICGLEWNR 243 (335)
Q Consensus 175 ~~~~~~-~~---~~~~-~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~---~~~~~~~~~~~ 243 (335)
...... .+ ..+. .-...+..+.|.+++. |++... ..+..+...++.... ...+.. ..++..++-++
T Consensus 477 r~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~-L~V~~~-~~~~~v~~v~vDG~~-~~~~~~~n~~~~v~~vaa~~ 550 (591)
T PRK13616 477 QTEDGQYALTNPREVGPGLGDTAVSLDWRTGDS-LVVGRS-DPEHPVWYVNLDGSN-SDALPSRNLSAPVVAVAASP 550 (591)
T ss_pred eCCCCceeecccEEeecccCCccccceEecCCE-EEEEec-CCCCceEEEecCCcc-ccccCCCCccCceEEEecCC
Confidence 221121 11 1122 2233468899999986 444332 133444444444222 212122 33455565554
No 370
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.92 E-value=0.00083 Score=56.61 Aligned_cols=135 Identities=13% Similarity=0.153 Sum_probs=96.2
Q ss_pred ecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCC-------EEEEEECCCcEEEEeCCCcee--Eeeeccc----
Q 019847 33 ALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAK-------TLAVGYMDSKLQLWDAETSKL--VRNLEGH---- 99 (335)
Q Consensus 33 ~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~dg~i~iw~~~~~~~--~~~~~~~---- 99 (335)
.....++-.|++.|+......+. .+ |+-+.+.|+.+ .-+.|-.|..|.-||.+-... +...+.|
T Consensus 353 ~~~~~l~klDIE~GKIVeEWk~~--~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~ 429 (644)
T KOG2395|consen 353 GEQDKLYKLDIERGKIVEEWKFE--DD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYST 429 (644)
T ss_pred CCcCcceeeecccceeeeEeecc--CC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccccc
Confidence 34567888999999988877763 22 77888888653 234566788999999863221 2112222
Q ss_pred ccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEcc
Q 019847 100 HRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERS 174 (335)
Q Consensus 100 ~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 174 (335)
.....|.+-. ...++++|+.+|.|++||- .+......+++...+|..+..+.+|++++..+ +..+.+-++.
T Consensus 430 k~nFsc~aTT--~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 430 KNNFSCFATT--ESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred ccccceeeec--CCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 2233444433 5678999999999999997 46666677888899999999999999888766 6677777754
No 371
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.89 E-value=0.0087 Score=48.69 Aligned_cols=199 Identities=15% Similarity=0.134 Sum_probs=117.1
Q ss_pred cCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeeccc-----ccceeEeee
Q 019847 34 LGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGH-----HRRVATSSW 108 (335)
Q Consensus 34 ~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-----~~~v~~~~~ 108 (335)
..+.|.-|+..+++. ..+..+ +.+.++..-..+..|+++. . -+.+++.+++.....+... ....+.+..
T Consensus 45 ~~~~i~r~~~~~g~~-~~~~~p---~~~~~~~~~d~~g~Lv~~~-~-g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v 118 (307)
T COG3386 45 LGGRIHRLDPETGKK-RVFPSP---GGFSSGALIDAGGRLIACE-H-GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVV 118 (307)
T ss_pred CCCeEEEecCCcCce-EEEECC---CCcccceeecCCCeEEEEc-c-ccEEEeccCCceeEEeccccCCCCcCCCCceeE
Confidence 678889998887764 233333 2334444444444555552 3 4777777666553333211 134556777
Q ss_pred cCCCCCEEEEeeC-----C----CcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCC-CeEEEEEccC--C
Q 019847 109 NHWNGHILTSGSK-----D----KSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDD-NVVRIWERSK--M 176 (335)
Q Consensus 109 ~~~~~~~l~~~~~-----d----g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~i~iwd~~~--~ 176 (335)
.| ++.+.++... . ..-.+|.+.......+....+-..-+.|+||||++.|..+... +.|.-|++.. .
T Consensus 119 ~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g 197 (307)
T COG3386 119 DP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATG 197 (307)
T ss_pred cC-CCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccC
Confidence 77 6766665444 0 1113444442333345455555566889999999888777654 7788887652 1
Q ss_pred Ccc--cceeeccCCCCCeeEEEecCCCCcEEEEecCCCCC-eEEEEECCCCceEEEeecC-CcEeEEEeCC
Q 019847 177 SSS--KSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDG-CIKIWNVQKGTCIHGIDAK-AQICGLEWNR 243 (335)
Q Consensus 177 ~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~-~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~ 243 (335)
... .....+....+..-.++...+|. +.+++. .+| .|.+|+.. ++.+..++.+ ..+++++|--
T Consensus 198 ~~~~~~~~~~~~~~~G~PDG~~vDadG~-lw~~a~--~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG 264 (307)
T COG3386 198 PIGGRRGFVDFDEEPGLPDGMAVDADGN-LWVAAV--WGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGG 264 (307)
T ss_pred ccCCcceEEEccCCCCCCCceEEeCCCC-EEEecc--cCCceEEEECCC-CcEEEEEECCCCCCccceEeC
Confidence 111 11222223455666788888885 443332 333 99999988 9999988877 6677777643
No 372
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=0.00011 Score=62.79 Aligned_cols=93 Identities=23% Similarity=0.418 Sum_probs=75.5
Q ss_pred CCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCee-EEEecCCCCcEEEEecCCCCCeEEEEECC
Q 019847 144 SGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVK-ALAWSPHQVNVLATGGGREDGCIKIWNVQ 222 (335)
Q Consensus 144 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~g~~d~~i~i~d~~ 222 (335)
...+.-+.|+|.-.++|.+..+|.|.+..++ .+.+.++.-+...++ +++|.|||+ +++.|- .||+|++-|.+
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n----~qRlwtip~p~~~v~~sL~W~~DGk-llaVg~--kdG~I~L~Dve 92 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN----WQRLWTIPIPGENVTASLCWRPDGK-LLAVGF--KDGTIRLHDVE 92 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec----cceeEeccCCCCccceeeeecCCCC-EEEEEe--cCCeEEEEEcc
Confidence 4467789999999999999999999998866 355667765666777 999999985 677765 89999999999
Q ss_pred CCceEEE--eecCCcEeEEEeCC
Q 019847 223 KGTCIHG--IDAKAQICGLEWNR 243 (335)
Q Consensus 223 ~~~~~~~--~~~~~~~~~~~~~~ 243 (335)
++..+.. +....++.++.|++
T Consensus 93 ~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 93 KGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred CCCceeccccccccchheeeccc
Confidence 9988877 44566788888864
No 373
>PHA02713 hypothetical protein; Provisional
Probab=97.85 E-value=0.0024 Score=56.87 Aligned_cols=179 Identities=9% Similarity=0.034 Sum_probs=92.6
Q ss_pred eEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCC-----cEEEEeCCCceeEe--eecccccceeEeeec
Q 019847 37 VLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDS-----KLQLWDAETSKLVR--NLEGHHRRVATSSWN 109 (335)
Q Consensus 37 ~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iw~~~~~~~~~--~~~~~~~~v~~~~~~ 109 (335)
.+..||..+++......++........+ .-+++..+.|+.++ .+..||..+.+-.. .+.........+..
T Consensus 321 ~v~~Yd~~~n~W~~~~~m~~~R~~~~~~--~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~- 397 (557)
T PHA02713 321 KVYKINIENKIHVELPPMIKNRCRFSLA--VIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL- 397 (557)
T ss_pred eEEEEECCCCeEeeCCCCcchhhceeEE--EECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE-
Confidence 5778888777654443332222222222 23677778887654 48889988764332 22211112222222
Q ss_pred CCCCCEEEEeeCCC-----------------------cEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCC
Q 019847 110 HWNGHILTSGSKDK-----------------------SIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDN 166 (335)
Q Consensus 110 ~~~~~~l~~~~~dg-----------------------~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 166 (335)
++.+.+.|+.++ .+..||..+....... .........-...-++++.+.|+.++
T Consensus 398 --~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~-~m~~~r~~~~~~~~~~~IYv~GG~~~ 474 (557)
T PHA02713 398 --DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLP-NFWTGTIRPGVVSHKDDIYVVCDIKD 474 (557)
T ss_pred --CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecC-CCCcccccCcEEEECCEEEEEeCCCC
Confidence 778888887653 4777887765432111 11111111111223567777776542
Q ss_pred ------eEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCC--eEEEEECCCCce
Q 019847 167 ------VVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDG--CIKIWNVQKGTC 226 (335)
Q Consensus 167 ------~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~--~i~i~d~~~~~~ 226 (335)
.+..||.++...+..+..+.........+.+ +..+.++|+ .++ .+..||..+.+-
T Consensus 475 ~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~---~~~iyv~Gg--~~~~~~~e~yd~~~~~W 537 (557)
T PHA02713 475 EKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH---DNTIMMLHC--YESYMLQDTFNVYTYEW 537 (557)
T ss_pred CCccceeEEEecCCCCCCeeEccccCcccccceeEEE---CCEEEEEee--ecceeehhhcCcccccc
Confidence 4678887752234444444333333333333 336888876 666 677777766543
No 374
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.82 E-value=0.0035 Score=41.73 Aligned_cols=102 Identities=21% Similarity=0.241 Sum_probs=63.3
Q ss_pred eeEeeecCC---CCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcc
Q 019847 103 VATSSWNHW---NGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSS 179 (335)
Q Consensus 103 v~~~~~~~~---~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 179 (335)
|+++++... ..+.|++|+.|..|++|+- ..+..... ....|++++-... ..++.+..+|+|-+|+-..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~---~e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~---- 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG---DEIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ---- 72 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC---CcEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeCcc----
Confidence 455655442 3378999999999999984 33344333 4556777776655 6799999999999998422
Q ss_pred cceeeccCCCCCeeEEEecC---CCCcEEEEecCCCCCeEE
Q 019847 180 KSLHRFTDHCGGVKALAWSP---HQVNVLATGGGREDGCIK 217 (335)
Q Consensus 180 ~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~g~~d~~i~ 217 (335)
.+-..+. +..+.++.+.. +|..-+++|- .+|.|-
T Consensus 73 -RlWRiKS-K~~~~~~~~~D~~gdG~~eLI~Gw--snGkve 109 (111)
T PF14783_consen 73 -RLWRIKS-KNQVTSMAFYDINGDGVPELIVGW--SNGKVE 109 (111)
T ss_pred -eeeeecc-CCCeEEEEEEcCCCCCceEEEEEe--cCCeEE
Confidence 2333332 23355555433 3333444443 677664
No 375
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.81 E-value=0.0001 Score=38.81 Aligned_cols=36 Identities=33% Similarity=0.768 Sum_probs=31.8
Q ss_pred eEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEE
Q 019847 137 TSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWE 172 (335)
Q Consensus 137 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd 172 (335)
...+..|...|.++.|+++++.+++++.|+.+++|+
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 445567888999999999989999999999999996
No 376
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.76 E-value=0.011 Score=46.14 Aligned_cols=214 Identities=14% Similarity=0.173 Sum_probs=127.8
Q ss_pred ceeEeeecccccceeEeeecCCCCCEEEEeeCCCc-EEEEecccCCeeeEEeecCCC-CEEEEEeecCCCEEEEEeCC--
Q 019847 90 SKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKS-IINHDVRVSNNVTSCIKAHSG-EVCGLKWSNEGNLLASGGDD-- 165 (335)
Q Consensus 90 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-i~~~d~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~d-- 165 (335)
|+.+.... -...-..+.++|..+.-++.+-.-|+ ..++|......+......... ---.=.|||||.+|...-.|
T Consensus 58 Gk~v~~~~-lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd 136 (366)
T COG3490 58 GKIVFATA-LPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFD 136 (366)
T ss_pred Cceeeeee-cccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCC
Confidence 44443332 23445567888877777777777775 567888766554332211111 11224689999999876544
Q ss_pred ---CeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecC---------------CCCCeEEEEECCCCceE
Q 019847 166 ---NVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGG---------------REDGCIKIWNVQKGTCI 227 (335)
Q Consensus 166 ---g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g---------------~~d~~i~i~d~~~~~~~ 227 (335)
|.|-+||.+.. .+.+-.+..|.-....+.|.+||..++.+.+| +..-++.+.|..+|+.+
T Consensus 137 ~~rGViGvYd~r~~--fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~li 214 (366)
T COG3490 137 PNRGVIGVYDAREG--FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLI 214 (366)
T ss_pred CCCceEEEEecccc--cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchh
Confidence 68999998843 45566777777777889999999766665431 11234556666666665
Q ss_pred EEeecC-----CcEeEEEeCCCCceeeeeee-------------------------------------------------
Q 019847 228 HGIDAK-----AQICGLEWNRHHKEILSGHG------------------------------------------------- 253 (335)
Q Consensus 228 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~------------------------------------------------- 253 (335)
.+...+ -.+..++..++|..++.+.+
T Consensus 215 ekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV 294 (366)
T COG3490 215 EKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLV 294 (366)
T ss_pred hhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeE
Confidence 544332 34666777777765554311
Q ss_pred eeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEec
Q 019847 254 FSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEA 310 (335)
Q Consensus 254 ~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~ 310 (335)
..++-..+...+||..++..+....-.. ...++-... -++..+.+|.+.++.-
T Consensus 295 ~lTSP~GN~~vi~da~tG~vv~~a~l~d--aaGva~~~~--gf~vssg~G~~~~~s~ 347 (366)
T COG3490 295 ALTSPRGNRAVIWDAATGAVVSEAALPD--AAGVAAAKG--GFAVSSGQGRIIFYSR 347 (366)
T ss_pred EEecCCCCeEEEEEcCCCcEEecccccc--cccceeccC--ceEEecCCceEEeccc
Confidence 2234456677788888888765533211 222333333 3555667788887743
No 377
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.75 E-value=0.0091 Score=53.28 Aligned_cols=181 Identities=15% Similarity=0.203 Sum_probs=102.0
Q ss_pred CeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECC------CcEEEEeCCCceeEe--eecccccceeEee
Q 019847 36 PVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMD------SKLQLWDAETSKLVR--NLEGHHRRVATSS 107 (335)
Q Consensus 36 ~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iw~~~~~~~~~--~~~~~~~~v~~~~ 107 (335)
..+..||..+++......++.... -.+++.. ++...++|+.| .++..||..+.+-.. .+...........
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~r~-~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~ 378 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSPRC-RVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAV 378 (571)
T ss_pred ceeEEecCCcCcEeecCCCCcccc-cccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEE
Confidence 478899999887766666653333 3344443 55778888888 357788887766433 2221222222222
Q ss_pred ecCCCCCEEEEeeCCC-----cEEEEecccCCeeeEEeecCCCCEEEEEee-cCCCEEEEEeCCC------eEEEEEccC
Q 019847 108 WNHWNGHILTSGSKDK-----SIINHDVRVSNNVTSCIKAHSGEVCGLKWS-NEGNLLASGGDDN------VVRIWERSK 175 (335)
Q Consensus 108 ~~~~~~~~l~~~~~dg-----~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~dg------~i~iwd~~~ 175 (335)
. ++.+.++|+.|| ++-.||..+.+... .............. -+|.+.++|+.++ ++..||..+
T Consensus 379 l---~g~iYavGG~dg~~~l~svE~YDp~~~~W~~--va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t 453 (571)
T KOG4441|consen 379 L---DGKLYAVGGFDGEKSLNSVECYDPVTNKWTP--VAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPET 453 (571)
T ss_pred E---CCEEEEEeccccccccccEEEecCCCCcccc--cCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCC
Confidence 2 889999999997 46778877554321 11122223333322 2778888888664 467788664
Q ss_pred CCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCC-----eEEEEECCCCceEEE
Q 019847 176 MSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDG-----CIKIWNVQKGTCIHG 229 (335)
Q Consensus 176 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~-----~i~i~d~~~~~~~~~ 229 (335)
. .+..+..+........ ++.. +..+++.|+ .|+ ++..||.++.+-...
T Consensus 454 ~-~W~~~~~M~~~R~~~g-~a~~--~~~iYvvGG--~~~~~~~~~VE~ydp~~~~W~~v 506 (571)
T KOG4441|consen 454 N-TWTLIAPMNTRRSGFG-VAVL--NGKIYVVGG--FDGTSALSSVERYDPETNQWTMV 506 (571)
T ss_pred C-ceeecCCcccccccce-EEEE--CCEEEEECC--ccCCCccceEEEEcCCCCceeEc
Confidence 3 2333333322222222 2222 236888875 454 377788877655433
No 378
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.69 E-value=0.014 Score=45.06 Aligned_cols=145 Identities=12% Similarity=0.106 Sum_probs=90.7
Q ss_pred CCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEE
Q 019847 70 AKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCG 149 (335)
Q Consensus 70 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~ 149 (335)
..+++.|+..+.+.--|..+|+...+-. ....+.+-+.- -++.++.|...|.+++.+..++.+.........-.+ .
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v--vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~-~ 98 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV--VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKV-R 98 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE--ECCEEEEEEccCcEEEEEecchhheeeeeehhhhcc-c
Confidence 4577888889999999999998876543 22333333332 467799999999999999998876544322222122 2
Q ss_pred EEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCC
Q 019847 150 LKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKG 224 (335)
Q Consensus 150 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~ 224 (335)
....+++..+..|+.|+..+..|.++ ...+...+-..+-..+-+..|-...++++. ..|.+.--....+
T Consensus 99 a~~d~~~glIycgshd~~~yalD~~~---~~cVykskcgG~~f~sP~i~~g~~sly~a~---t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 99 AQCDFDGGLIYCGSHDGNFYALDPKT---YGCVYKSKCGGGTFVSPVIAPGDGSLYAAI---TAGAVLAVTKNPY 167 (354)
T ss_pred eEEcCCCceEEEecCCCcEEEecccc---cceEEecccCCceeccceecCCCceEEEEe---ccceEEEEccCCC
Confidence 33467899999999999999999776 334444333323333445556222344433 3455544444433
No 379
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.69 E-value=0.015 Score=45.50 Aligned_cols=218 Identities=12% Similarity=0.139 Sum_probs=119.1
Q ss_pred CeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEEC-----CCcEEEEeCCCc-eeEeeecccccceeEeeec
Q 019847 36 PVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYM-----DSKLQLWDAETS-KLVRNLEGHHRRVATSSWN 109 (335)
Q Consensus 36 ~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~iw~~~~~-~~~~~~~~~~~~v~~~~~~ 109 (335)
....++|.++.+...........-.--.=.|||||.+|.+.-. .|.|-|||...+ +.+.++..|.-....+.+.
T Consensus 91 tf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm 170 (366)
T COG3490 91 TFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLM 170 (366)
T ss_pred ceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEe
Confidence 3567778777664433322111111112369999999877643 478999998754 5677788888888899999
Q ss_pred CCCCCEEEEeeCC------------------CcEEEEecccCCeeeE-Eee--cCCCCEEEEEeecCCCEEEEEeCCCeE
Q 019847 110 HWNGHILTSGSKD------------------KSIINHDVRVSNNVTS-CIK--AHSGEVCGLKWSNEGNLLASGGDDNVV 168 (335)
Q Consensus 110 ~~~~~~l~~~~~d------------------g~i~~~d~~~~~~~~~-~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i 168 (335)
+ +++.++.+... -++.+.|..++..+.+ .+. .+.-.|..++..+||..++.+-..|.-
T Consensus 171 ~-DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~ 249 (366)
T COG3490 171 A-DGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPR 249 (366)
T ss_pred c-CCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCC
Confidence 9 89888876421 1222333222222111 111 234456677777776655544332210
Q ss_pred -----EEEEccCCCcccceeecc-------CCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcE
Q 019847 169 -----RIWERSKMSSSKSLHRFT-------DHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQI 236 (335)
Q Consensus 169 -----~iwd~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~ 236 (335)
.+=-.+. .++++.+. .....|-+++.+.+...+.+++- ..+...+||..+|..+..-.... .
T Consensus 250 ~d~ppLvg~~~~---g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP--~GN~~vi~da~tG~vv~~a~l~d-a 323 (366)
T COG3490 250 NDLPPLVGHFRK---GEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSP--RGNRAVIWDAATGAVVSEAALPD-A 323 (366)
T ss_pred ccCCcceeeccC---CCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecC--CCCeEEEEEcCCCcEEecccccc-c
Confidence 0000001 11111111 12344667888877666666665 67788999999998875543211 1
Q ss_pred eEEEeCCCCceeeeeeeeeeecCCCeEEEEEC
Q 019847 237 CGLEWNRHHKEILSGHGFSASGDGNKLCLWKY 268 (335)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~ 268 (335)
..+.-. ...|.+++.+|.+.++.-
T Consensus 324 aGva~~--------~~gf~vssg~G~~~~~s~ 347 (366)
T COG3490 324 AGVAAA--------KGGFAVSSGQGRIIFYSR 347 (366)
T ss_pred ccceec--------cCceEEecCCceEEeccc
Confidence 222211 122444466888888753
No 380
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.69 E-value=0.041 Score=50.46 Aligned_cols=292 Identities=10% Similarity=0.112 Sum_probs=161.3
Q ss_pred cCCCCcccccceeeeecCCceEEEecCCeEEEEEec--CCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEe
Q 019847 9 DAPYLMEDYYSKVIDWGRNNVLAVALGPVLFLWKWE--NGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWD 86 (335)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vw~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~ 86 (335)
..+..|...-..++.-+...++++..||.+.-|.++ +++.....+..-...++.--.|+..++.-+.+..|.-..+|.
T Consensus 578 ~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~ 657 (1096)
T KOG1897|consen 578 SGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYS 657 (1096)
T ss_pred CCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEe
Confidence 334455554444444445678888899988766554 444433332222355666667776555444445566666665
Q ss_pred CCCceeEeeecccccceeEeeecCC-CCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCC
Q 019847 87 AETSKLVRNLEGHHRRVATSSWNHW-NGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDD 165 (335)
Q Consensus 87 ~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 165 (335)
. +++++..--.-+..-..+.|+.+ -+..++.+ ..+.+++.-+..-+++....-.-......+++.+....+++.+.-
T Consensus 658 ~-n~kLv~spls~kev~~~c~f~s~a~~d~l~~~-~~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r 735 (1096)
T KOG1897|consen 658 S-NGKLVYSPLSLKEVNHMCPFNSDAYPDSLASA-NGGALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNR 735 (1096)
T ss_pred c-CCcEEEeccchHHhhhhcccccccCCceEEEe-cCCceEEEEecchhhcceeeecCCCChhheEecccceEEEEEecc
Confidence 3 34443321111111112223321 23344444 345677766654333222222334455667777644444443321
Q ss_pred --------------CeEEEEEccCCCccccee--eccCC--CCCeeEEEecCCCCcEEEEecC--------CCCCeEEEE
Q 019847 166 --------------NVVRIWERSKMSSSKSLH--RFTDH--CGGVKALAWSPHQVNVLATGGG--------REDGCIKIW 219 (335)
Q Consensus 166 --------------g~i~iwd~~~~~~~~~~~--~~~~~--~~~v~~~~~~~~~~~~~~~~~g--------~~d~~i~i~ 219 (335)
..++++|-++. +.+. .+... ...+.++.|..|....++.|.+ ...|.|.+|
T Consensus 736 ~e~~~~~~~ee~~~s~l~vlD~nTf---~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivf 812 (1096)
T KOG1897|consen 736 IESSAEYYGEEYEVSFLRVLDQNTF---EVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVF 812 (1096)
T ss_pred cccchhhcCCcceEEEEEEecCCce---eEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEE
Confidence 13566664432 1121 11111 1234555688775555555531 135788888
Q ss_pred ECCCCce---EEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEE
Q 019847 220 NVQKGTC---IHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTV 296 (335)
Q Consensus 220 d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 296 (335)
....+.. +......+.+.++.. -+|++++.- +..|++|++.+.+.++.-..+..++..+...-.|..+
T Consensus 813 e~~e~~~L~~v~e~~v~Gav~aL~~-fngkllA~I--------n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI 883 (1096)
T KOG1897|consen 813 EFEELNSLELVAETVVKGAVYALVE-FNGKLLAGI--------NQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEI 883 (1096)
T ss_pred EEecCCceeeeeeeeeccceeehhh-hCCeEEEec--------CcEEEEEEccccceehhhhcccCCeEEEEEEecCcEE
Confidence 8776332 233334455555543 245666543 7899999999998887777888889999999999999
Q ss_pred EEEeCCCcEEEEecCCCC
Q 019847 297 ATAGADETIRFWEAFGPS 314 (335)
Q Consensus 297 ~~~~~dg~v~iw~~~~~~ 314 (335)
++|.--+.+.+-.....+
T Consensus 884 ~VgDlm~Sitll~y~~~e 901 (1096)
T KOG1897|consen 884 AVGDLMRSITLLQYKGDE 901 (1096)
T ss_pred EEeeccceEEEEEEeccC
Confidence 999888887776665544
No 381
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.66 E-value=0.031 Score=48.25 Aligned_cols=245 Identities=13% Similarity=0.112 Sum_probs=129.6
Q ss_pred eeeecCC-ceEEEe--cCC----eEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCC-----------cE
Q 019847 21 VIDWGRN-NVLAVA--LGP----VLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDS-----------KL 82 (335)
Q Consensus 21 ~~~~~~~-~~~~~~--~~~----~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----------~i 82 (335)
.+.++++ .+++.+ .+| .++++|+++++..... +.. .....+.|.++++.|+....+. .|
T Consensus 128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~-i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG-IEN--PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE-EEE--EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCc-ccc--cccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 4667763 444433 333 6999999999765432 111 1123499999988877765433 37
Q ss_pred EEEeCCCcee--Eeeecccccc--eeEeeecCCCCCEEEEeeCC----CcEEEEecccC---CeeeEEeecCCCCE-EEE
Q 019847 83 QLWDAETSKL--VRNLEGHHRR--VATSSWNHWNGHILTSGSKD----KSIINHDVRVS---NNVTSCIKAHSGEV-CGL 150 (335)
Q Consensus 83 ~iw~~~~~~~--~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~d----g~i~~~d~~~~---~~~~~~~~~~~~~i-~~~ 150 (335)
+.|.+.+... ...+...... ...+..++ ++++++..... ..+.+.++... ......+......+ ..+
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~-d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v 283 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSK-DGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYV 283 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-T-TSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEE
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecC-cccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEE
Confidence 8888776532 2333333332 55777888 77776654322 34777787753 22233333334344 334
Q ss_pred EeecCCCEEEEEe---CCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCC--CeEEEEECCCCc
Q 019847 151 KWSNEGNLLASGG---DDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGRED--GCIKIWNVQKGT 225 (335)
Q Consensus 151 ~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d--~~i~i~d~~~~~ 225 (335)
... .+.+++... ..+.|.-.++...........+..+...+.-..+...+.+|++... .+ ..|+++++..+.
T Consensus 284 ~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~--~~~~~~l~v~~~~~~~ 360 (414)
T PF02897_consen 284 DHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYR--ENGSSRLRVYDLDDGK 360 (414)
T ss_dssp EEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEE--ETTEEEEEEEETT-TE
T ss_pred Ecc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEE--ECCccEEEEEECCCCc
Confidence 333 444444443 2356777787765432222244445553333333344556777664 44 468899988445
Q ss_pred eEEEeec--CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCcee
Q 019847 226 CIHGIDA--KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKV 274 (335)
Q Consensus 226 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~ 274 (335)
....+.. .+.+..+...+++..+... +.+-..-..+..||+.+++..
T Consensus 361 ~~~~~~~p~~g~v~~~~~~~~~~~~~~~--~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 361 ESREIPLPEAGSVSGVSGDFDSDELRFS--YSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EEEEEESSSSSEEEEEES-TT-SEEEEE--EEETTEEEEEEEEETTTTCEE
T ss_pred EEeeecCCcceEEeccCCCCCCCEEEEE--EeCCCCCCEEEEEECCCCCEE
Confidence 5444443 3345666666666655433 111233567888888877653
No 382
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.63 E-value=0.00017 Score=53.96 Aligned_cols=142 Identities=13% Similarity=0.099 Sum_probs=84.3
Q ss_pred eEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCc-eeEeeecccccceeEee
Q 019847 29 VLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETS-KLVRNLEGHHRRVATSS 107 (335)
Q Consensus 29 ~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~v~~~~ 107 (335)
+.+.+.++.|+-+++...+...... .-|... .....-+..+++|+.+|.|.+|+.... .....+......|.++.
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse-~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~I 108 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSE-RFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGI 108 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhh-hhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceecc
Confidence 5566677888877776544322111 112111 112224567899999999999987622 22222222233444444
Q ss_pred ecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCC-CCEEEEEeecCCCEEEEE--eCCCeEEEEEccC
Q 019847 108 WNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHS-GEVCGLKWSNEGNLLASG--GDDNVVRIWERSK 175 (335)
Q Consensus 108 ~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~--~~dg~i~iwd~~~ 175 (335)
-.-.++.+..++..+|.|+.|++...+. ......|. .++..+..+..++.++.+ |.|..++.|++..
T Consensus 109 p~~~~~~~~c~~~~dg~ir~~n~~p~k~-~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 109 PNGRDSSLGCVGAQDGRIRACNIKPNKV-LGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ccccccceeEEeccCCceeeeccccCce-eeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 3333566899999999999999985543 44444555 455555555556666666 6677777777654
No 383
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.60 E-value=0.026 Score=45.75 Aligned_cols=233 Identities=14% Similarity=0.179 Sum_probs=111.2
Q ss_pred cccceeeeecCCceEEEecCCeEEEEEecCCceeeEEeec-CCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCce-eE
Q 019847 16 DYYSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVP-GEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSK-LV 93 (335)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-~~ 93 (335)
++...++++.++..++++..+ +.+...+.++.=....+. .-......+....++. ...++..|.|..=. +.|+ -.
T Consensus 61 ~~~l~~I~f~~~~g~ivG~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~-~~l~~~~G~iy~T~-DgG~tW~ 137 (302)
T PF14870_consen 61 DYHLNSISFDGNEGWIVGEPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGS-AELAGDRGAIYRTT-DGGKTWQ 137 (302)
T ss_dssp --EEEEEEEETTEEEEEEETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEETTE-EEEEETT--EEEES-STTSSEE
T ss_pred eeeEEEEEecCCceEEEcCCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCc-EEEEcCCCcEEEeC-CCCCCee
Confidence 456777888877666666655 334444445432332221 1122233444433443 33334455433321 2222 22
Q ss_pred eeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEc
Q 019847 94 RNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWER 173 (335)
Q Consensus 94 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 173 (335)
.........+..+.-++ ++.+++++..-....-||.-...- ..........|..+.|.|++.+.+.+ ..|.|+.=+.
T Consensus 138 ~~~~~~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w-~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~ 214 (302)
T PF14870_consen 138 AVVSETSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTW-QPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDD 214 (302)
T ss_dssp EEE-S----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS--EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-
T ss_pred EcccCCcceeEeEEECC-CCcEEEEECcccEEEEecCCCccc-eEEccCccceehhceecCCCCEEEEe-CCcEEEEccC
Confidence 22344557788888888 899888887666667787542221 12223356789999999998766654 7888888771
Q ss_pred -cCCCcccc-eeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec----CCcEeEEEeCCCCce
Q 019847 174 -SKMSSSKS-LHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA----KAQICGLEWNRHHKE 247 (335)
Q Consensus 174 -~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 247 (335)
...+.... +.......-.+..++|.+++ .+.++++ .|.+ +.....|+.=+..+. +.....+.|.+..+-
T Consensus 215 ~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~-~~wa~gg---~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~g 289 (302)
T PF14870_consen 215 PDDGETWSEPIIPIKTNGYGILDLAYRPPN-EIWAVGG---SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKG 289 (302)
T ss_dssp TTEEEEE---B-TTSS--S-EEEEEESSSS--EEEEES---TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEE
T ss_pred CCCccccccccCCcccCceeeEEEEecCCC-CEEEEeC---CccE-EEeCCCCccceECccccCCCCceEEEEEcCCCce
Confidence 11111111 11121223347899999886 4666664 5543 344555654444332 446788888877777
Q ss_pred eeeeeeeeeecCCCeEEEE
Q 019847 248 ILSGHGFSASGDGNKLCLW 266 (335)
Q Consensus 248 ~~~~~~~~~~~~~~~i~i~ 266 (335)
++.| .+|.+.-|
T Consensus 290 f~lG-------~~G~ll~~ 301 (302)
T PF14870_consen 290 FVLG-------QDGVLLRY 301 (302)
T ss_dssp EEE--------STTEEEEE
T ss_pred EEEC-------CCcEEEEe
Confidence 7765 47766544
No 384
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.60 E-value=0.03 Score=46.47 Aligned_cols=231 Identities=12% Similarity=0.108 Sum_probs=112.3
Q ss_pred eEEEEcCCCCEEEEEEC---CCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeE
Q 019847 62 TSVSWSHDAKTLAVGYM---DSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTS 138 (335)
Q Consensus 62 ~~~~~~~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~ 138 (335)
+.=+|.++|+.|+.++. ...+.+.|+.+++..+.-.+..........+| +.+.++-......++-.|+++.+. ..
T Consensus 39 ~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~-~~~~~~Yv~~~~~l~~vdL~T~e~-~~ 116 (386)
T PF14583_consen 39 YQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSP-DDRALYYVKNGRSLRRVDLDTLEE-RV 116 (386)
T ss_dssp TS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-T-TSSEEEEEETTTEEEEEETTT--E-EE
T ss_pred cCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEec-CCCeEEEEECCCeEEEEECCcCcE-EE
Confidence 34467889987777654 44678889999887665543333344566677 566665555567888999987654 34
Q ss_pred EeecCCCCEEEEEee--cCCCEEEEEeC----------------------CCeEEEEEccCCCcccceeeccCCCCCeeE
Q 019847 139 CIKAHSGEVCGLKWS--NEGNLLASGGD----------------------DNVVRIWERSKMSSSKSLHRFTDHCGGVKA 194 (335)
Q Consensus 139 ~~~~~~~~i~~~~~~--~~~~~l~~~~~----------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~ 194 (335)
.+......+-...|. .++..++-.-. ...|.--|+++++ ...+......+.-
T Consensus 117 vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~----~~~v~~~~~wlgH 192 (386)
T PF14583_consen 117 VYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGE----RKVVFEDTDWLGH 192 (386)
T ss_dssp EEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT------EEEEEEESS-EEE
T ss_pred EEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCc----eeEEEecCccccC
Confidence 444445555445554 35555443211 1123334444432 2222223456778
Q ss_pred EEecCCCCcEEEEec-CCC---CCeEEEEECCCCceEEEeec---CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEE
Q 019847 195 LAWSPHQVNVLATGG-GRE---DGCIKIWNVQKGTCIHGIDA---KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWK 267 (335)
Q Consensus 195 ~~~~~~~~~~~~~~~-g~~---d~~i~i~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d 267 (335)
+.|+|..+.+++-|- |.. |..|.+.+.. +.....+.. ...+..=-|.|+|..+..-. ...++.+..|.-+|
T Consensus 193 ~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~d-g~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~-~~~~~~~~~i~~~d 270 (386)
T PF14583_consen 193 VQFSPTDPTLIMFCHEGPWDLVDQRIWTINTD-GSNVKKVHRRMEGESVGHEFWVPDGSTIWYDS-YTPGGQDFWIAGYD 270 (386)
T ss_dssp EEEETTEEEEEEEEE-S-TTTSS-SEEEEETT-S---EESS---TTEEEEEEEE-TTSS-EEEEE-EETTT--EEEEEE-
T ss_pred cccCCCCCCEEEEeccCCcceeceEEEEEEcC-CCcceeeecCCCCcccccccccCCCCEEEEEe-ecCCCCceEEEeeC
Confidence 899999888888763 112 2244444433 333333322 23455667999998886532 22345566788889
Q ss_pred CCCCceeecccCCCCceeEeEEcCCCCEEEEEeCC
Q 019847 268 YPNMTKVGELQSSNSRILDLSQSPDGLTVATAGAD 302 (335)
Q Consensus 268 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 302 (335)
..+++....... .+...+..++||++++-=+.|
T Consensus 271 ~~t~~~~~~~~~--p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 271 PDTGERRRLMEM--PWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp TTT--EEEEEEE---SEEEEEE-TTSSEEEEEE--
T ss_pred CCCCCceEEEeC--CceeeeEEcCCCCEEEecCCC
Confidence 988765432221 234566778899877644443
No 385
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.55 E-value=0.066 Score=49.22 Aligned_cols=306 Identities=12% Similarity=0.161 Sum_probs=162.3
Q ss_pred cccceeeeecCCceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCC--C----CEEEEEECCCcEEEE-eCC
Q 019847 16 DYYSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHD--A----KTLAVGYMDSKLQLW-DAE 88 (335)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~----~~l~~~~~dg~i~iw-~~~ 88 (335)
...+..+..+...++.++.++.+...++..+......+ ..-...|.|+.++|- + +++++|.++..+.+. -..
T Consensus 489 ~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~-~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~p 567 (1096)
T KOG1897|consen 489 KITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSH-KEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLP 567 (1096)
T ss_pred ceEEEEEeecceEEEEecCccEEEEEEeeccceeeeee-heecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECC
Confidence 33344444444566677777777777777665332221 223567999999984 2 278888876655444 333
Q ss_pred CceeEeee----cccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEee---cCCCCEEEEEeec-------
Q 019847 89 TSKLVRNL----EGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIK---AHSGEVCGLKWSN------- 154 (335)
Q Consensus 89 ~~~~~~~~----~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~---~~~~~i~~~~~~~------- 154 (335)
+...+... +.-+..|.-..+-. +..+|.++..||.+.-|.+..........+ -...++.--.|+.
T Consensus 568 d~~~~~~~~l~~~~iPRSIl~~~~e~-d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vf 646 (1096)
T KOG1897|consen 568 DLILITHEQLSGEIIPRSILLTTFEG-DIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVF 646 (1096)
T ss_pred CcceeeeeccCCCccchheeeEEeec-cceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEE
Confidence 33333222 11234455555554 578999999999988776643221111000 0011111111111
Q ss_pred ------------CC------------------------CEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEec
Q 019847 155 ------------EG------------------------NLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWS 198 (335)
Q Consensus 155 ------------~~------------------------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 198 (335)
++ ..|+.+. .+.+++..++.-.... +++. .-......+++.
T Consensus 647 a~sdrP~viY~~n~kLv~spls~kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~-irtv-pl~~~prrI~~q 723 (1096)
T KOG1897|consen 647 ALSDRPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLH-IRTV-PLGESPRRICYQ 723 (1096)
T ss_pred EeCCCCEEEEecCCcEEEeccchHHhhhhcccccccCCceEEEec-CCceEEEEecchhhcc-eeee-cCCCChhheEec
Confidence 11 1222222 3345555444322211 2222 223456677777
Q ss_pred CCCCcEEEEecCC------------CCCeEEEEECCCCceEEEeecC-----CcEeEEEeCCC-Cceeeeeeeeeee---
Q 019847 199 PHQVNVLATGGGR------------EDGCIKIWNVQKGTCIHGIDAK-----AQICGLEWNRH-HKEILSGHGFSAS--- 257 (335)
Q Consensus 199 ~~~~~~~~~~~g~------------~d~~i~i~d~~~~~~~~~~~~~-----~~~~~~~~~~~-~~~~~~~~~~~~~--- 257 (335)
+.. .++.+.+.. .-..++++|-.+.+.+...+.. ..+.++.|..+ +.++++|..+.--
T Consensus 724 ~~s-l~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ 802 (1096)
T KOG1897|consen 724 ESS-LTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDEN 802 (1096)
T ss_pred ccc-eEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCC
Confidence 743 333332200 0124777787777766555432 24666668877 7888888765432
Q ss_pred -cCCCeEEEEECCCCceeecccCC--CCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCccccccccccce
Q 019847 258 -GDGNKLCLWKYPNMTKVGELQSS--NSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDEDSVSHLAGLVSLK 330 (335)
Q Consensus 258 -~~~~~i~i~d~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~i~~~~ 330 (335)
-..|.|.+|.+...+.+.....+ .+.+.++.. -+|++||.- +..|++|+....+.......+...+..+.
T Consensus 803 ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~-fngkllA~I--n~~vrLye~t~~~eLr~e~~~~~~~~aL~ 875 (1096)
T KOG1897|consen 803 EPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE-FNGKLLAGI--NQSVRLYEWTTERELRIECNISNPIIALD 875 (1096)
T ss_pred CcccceEEEEEEecCCceeeeeeeeeccceeehhh-hCCeEEEec--CcEEEEEEccccceehhhhcccCCeEEEE
Confidence 23588999988775544444332 234444432 256666654 46899999998866655555555544443
No 386
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.54 E-value=0.031 Score=49.96 Aligned_cols=235 Identities=15% Similarity=0.143 Sum_probs=119.0
Q ss_pred CCCCEEEEEECC------CcEEEEeCCCceeEeeecc-cccceeEeeecCCCCCEEEEeeCC-C-----cEEEEecccCC
Q 019847 68 HDAKTLAVGYMD------SKLQLWDAETSKLVRNLEG-HHRRVATSSWNHWNGHILTSGSKD-K-----SIINHDVRVSN 134 (335)
Q Consensus 68 ~~~~~l~~~~~d------g~i~iw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~d-g-----~i~~~d~~~~~ 134 (335)
..+..++.|+.+ ..+..||..+++....... ....-.+++.. ++.+.++|+.| | ++..||..+..
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~ 360 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQ 360 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCCc
Confidence 345667777766 3678888887744332221 22333444444 67889999988 3 57788887665
Q ss_pred eeeEEeecCCCCEEEEEee-cCCCEEEEEeCCCe-----EEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEe
Q 019847 135 NVTSCIKAHSGEVCGLKWS-NEGNLLASGGDDNV-----VRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATG 208 (335)
Q Consensus 135 ~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~dg~-----i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 208 (335)
... ...-..+-..+... -+|.+.|+|+.||. +-.||.++. ......... ..........-+..+.++|
T Consensus 361 W~~--~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~-~W~~va~m~---~~r~~~gv~~~~g~iYi~G 434 (571)
T KOG4441|consen 361 WTP--VAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTN-KWTPVAPML---TRRSGHGVAVLGGKLYIIG 434 (571)
T ss_pred eec--cCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCC-cccccCCCC---cceeeeEEEEECCEEEEEc
Confidence 321 11111111112222 26788999999874 677886643 223332222 1222333333334677777
Q ss_pred cCCCC----CeEEEEECCCCceEEEeecCC--cEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeec--ccCC
Q 019847 209 GGRED----GCIKIWNVQKGTCIHGIDAKA--QICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGE--LQSS 280 (335)
Q Consensus 209 ~g~~d----~~i~i~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~--~~~~ 280 (335)
+.+.. .++..||..+++-...-+... .-..++. -++...+.|. +...+....+..||..+.+-... +...
T Consensus 435 G~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~-~~~~iYvvGG-~~~~~~~~~VE~ydp~~~~W~~v~~m~~~ 512 (571)
T KOG4441|consen 435 GGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV-LNGKIYVVGG-FDGTSALSSVERYDPETNQWTMVAPMTSP 512 (571)
T ss_pred CcCCCccccceEEEEcCCCCceeecCCcccccccceEEE-ECCEEEEECC-ccCCCccceEEEEcCCCCceeEcccCccc
Confidence 51111 357788887765433322221 1122222 2333333331 00011123477888776544322 2222
Q ss_pred CCceeEeEEcCCCCEEEEEeCCC-----cEEEEecCCCC
Q 019847 281 NSRILDLSQSPDGLTVATAGADE-----TIRFWEAFGPS 314 (335)
Q Consensus 281 ~~~i~~~~~~~~~~~l~~~~~dg-----~v~iw~~~~~~ 314 (335)
...+-...+ ++...++|+.|| +|..||....+
T Consensus 513 rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 513 RSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred cccccEEEE--CCEEEEEecccCccccceeEEcCCCCCc
Confidence 222222222 566778888776 46677766554
No 387
>PHA03098 kelch-like protein; Provisional
Probab=97.49 E-value=0.037 Score=49.51 Aligned_cols=179 Identities=12% Similarity=0.115 Sum_probs=86.5
Q ss_pred eEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECC-----CcEEEEeCCCceeEee--ecccccceeEeeec
Q 019847 37 VLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMD-----SKLQLWDAETSKLVRN--LEGHHRRVATSSWN 109 (335)
Q Consensus 37 ~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iw~~~~~~~~~~--~~~~~~~v~~~~~~ 109 (335)
.+..||..+.+......++........+. -+++..+.|+.+ ..+..||..+.+.... +....... +++.
T Consensus 312 ~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~-~~~~- 387 (534)
T PHA03098 312 SVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNP-CVVN- 387 (534)
T ss_pred cEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccc-eEEE-
Confidence 57888888877654433332222222222 267777788765 3577888876643321 11111111 1222
Q ss_pred CCCCCEEEEeeCC------CcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCC--------CeEEEEEccC
Q 019847 110 HWNGHILTSGSKD------KSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDD--------NVVRIWERSK 175 (335)
Q Consensus 110 ~~~~~~l~~~~~d------g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~ 175 (335)
- ++.+.+.|+.+ ..+..||+.+..............-.++ ...++..++.|+.+ ..+.+||..+
T Consensus 388 ~-~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~ 465 (534)
T PHA03098 388 V-NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCA-IYHDGKIYVIGGISYIDNIKVYNIVESYNPVT 465 (534)
T ss_pred E-CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceE-EEECCEEEEECCccCCCCCcccceEEEecCCC
Confidence 1 67777777742 3578888875443111000000001112 22356677777643 2378888765
Q ss_pred CCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCC----CCeEEEEECCCCce
Q 019847 176 MSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGRE----DGCIKIWNVQKGTC 226 (335)
Q Consensus 176 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~----d~~i~i~d~~~~~~ 226 (335)
.. ...+............+.+ ++ .+++.|+ .. .+.+.+||..+.+-
T Consensus 466 ~~-W~~~~~~~~~r~~~~~~~~--~~-~iyv~GG-~~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 466 NK-WTELSSLNFPRINASLCIF--NN-KIYVVGG-DKYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred Cc-eeeCCCCCcccccceEEEE--CC-EEEEEcC-CcCCcccceeEEEeCCCCEE
Confidence 32 2222222111111122222 33 5666664 12 24678888776543
No 388
>PHA02713 hypothetical protein; Provisional
Probab=97.47 E-value=0.03 Score=50.08 Aligned_cols=224 Identities=9% Similarity=0.054 Sum_probs=107.5
Q ss_pred eEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECC------CcEEEEeCCCceeEe--eecccccceeEeee
Q 019847 37 VLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMD------SKLQLWDAETSKLVR--NLEGHHRRVATSSW 108 (335)
Q Consensus 37 ~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iw~~~~~~~~~--~~~~~~~~v~~~~~ 108 (335)
.+..||..+++......++..... .+++. -++...++|+.+ ..+..||..+.+... .+............
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~ 350 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIIN-YASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI 350 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccc-eEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE
Confidence 577888888876554444322211 22222 366777777753 347788887765322 12111112222222
Q ss_pred cCCCCCEEEEeeCCC-----cEEEEecccCCeeeEEeecCCCCE--EEEEeecCCCEEEEEeCCC---------------
Q 019847 109 NHWNGHILTSGSKDK-----SIINHDVRVSNNVTSCIKAHSGEV--CGLKWSNEGNLLASGGDDN--------------- 166 (335)
Q Consensus 109 ~~~~~~~l~~~~~dg-----~i~~~d~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~l~~~~~dg--------------- 166 (335)
++.+.+.|+.++ .+..||..+..... ...-..+. .+++ .-++++.+.|+.++
T Consensus 351 ---~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~--~~~mp~~r~~~~~~-~~~g~IYviGG~~~~~~~~~~~~~~~~~~ 424 (557)
T PHA02713 351 ---DDTIYAIGGQNGTNVERTIECYTMGDDKWKM--LPDMPIALSSYGMC-VLDQYIYIIGGRTEHIDYTSVHHMNSIDM 424 (557)
T ss_pred ---CCEEEEECCcCCCCCCceEEEEECCCCeEEE--CCCCCcccccccEE-EECCEEEEEeCCCcccccccccccccccc
Confidence 778888888764 47889987654321 11111111 1111 23677778777553
Q ss_pred --------eEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCC-----CeEEEEECCC-CceE--EEe
Q 019847 167 --------VVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGRED-----GCIKIWNVQK-GTCI--HGI 230 (335)
Q Consensus 167 --------~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d-----~~i~i~d~~~-~~~~--~~~ 230 (335)
.+..||.++. .+..+..+....... +++.. ++ .+.+.|+ ..+ ..+..||.++ .+-. ..+
T Consensus 425 ~~~~~~~~~ve~YDP~td-~W~~v~~m~~~r~~~-~~~~~-~~-~IYv~GG-~~~~~~~~~~ve~Ydp~~~~~W~~~~~m 499 (557)
T PHA02713 425 EEDTHSSNKVIRYDTVNN-IWETLPNFWTGTIRP-GVVSH-KD-DIYVVCD-IKDEKNVKTCIFRYNTNTYNGWELITTT 499 (557)
T ss_pred cccccccceEEEECCCCC-eEeecCCCCcccccC-cEEEE-CC-EEEEEeC-CCCCCccceeEEEecCCCCCCeeEcccc
Confidence 4677886643 222232222111111 12222 23 5777764 111 2467888886 4332 222
Q ss_pred ecCCcEeEEEeCCCCceeeeeeeeeeecCCC--eEEEEECCCCceeecccCC
Q 019847 231 DAKAQICGLEWNRHHKEILSGHGFSASGDGN--KLCLWKYPNMTKVGELQSS 280 (335)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~i~d~~~~~~~~~~~~~ 280 (335)
+.+.....++.. +++..+.| +.++ .+..||..+.+-......|
T Consensus 500 ~~~r~~~~~~~~-~~~iyv~G------g~~~~~~~e~yd~~~~~W~~~~~~~ 544 (557)
T PHA02713 500 ESRLSALHTILH-DNTIMMLH------CYESYMLQDTFNVYTYEWNHICHQH 544 (557)
T ss_pred CcccccceeEEE-CCEEEEEe------eecceeehhhcCcccccccchhhhc
Confidence 222222222221 44444444 4444 6677777665544333333
No 389
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=97.46 E-value=0.048 Score=45.34 Aligned_cols=242 Identities=18% Similarity=0.240 Sum_probs=115.5
Q ss_pred CceEEEEcCCCCEEEEEECCCcEEEEeCCCcee---Eeee----cccccceeEeeecCC---CCCEEEEeeCC-------
Q 019847 60 YPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKL---VRNL----EGHHRRVATSSWNHW---NGHILTSGSKD------- 122 (335)
Q Consensus 60 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~---~~~~----~~~~~~v~~~~~~~~---~~~~l~~~~~d------- 122 (335)
..+.|+|.|+|+++++ ...|.|++++ ..+.. +..+ .........++++|. ++.+.++.+..
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 3688999999876665 5699999999 44443 2222 234467889999882 23444443321
Q ss_pred -CcEEEEecccC-------CeeeEEeec---CCCCEEEEEeecCCCEEEEEeCCC-------------eEEEEEccCCC-
Q 019847 123 -KSIINHDVRVS-------NNVTSCIKA---HSGEVCGLKWSNEGNLLASGGDDN-------------VVRIWERSKMS- 177 (335)
Q Consensus 123 -g~i~~~d~~~~-------~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~dg-------------~i~iwd~~~~~- 177 (335)
..|.-|..... +.+...... ....-..|.|.|||.+.++.+..+ .|.-.+....-
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p 160 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIP 160 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCC
Confidence 23444444332 112222222 233456799999997777665433 23333322100
Q ss_pred c----------ccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCc----------------------
Q 019847 178 S----------SKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGT---------------------- 225 (335)
Q Consensus 178 ~----------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~---------------------- 225 (335)
. ...+. -.++. ....++|+|....++++-.| .++.=.|--++.|.
T Consensus 161 ~dnP~~~~~~~~~~i~-A~GlR-N~~~~~~d~~tg~l~~~d~G-~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~ 237 (331)
T PF07995_consen 161 ADNPFVGDDGADSEIY-AYGLR-NPFGLAFDPNTGRLWAADNG-PDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAP 237 (331)
T ss_dssp TTSTTTTSTTSTTTEE-EE--S-EEEEEEEETTTTEEEEEEE--SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGS
T ss_pred CCCccccCCCceEEEE-EeCCC-ccccEEEECCCCcEEEEccC-CCCCcEEEEeccCCcCCCCCCcCCCCCCCCcccccc
Confidence 0 00000 01122 24578999983356555432 22222222222221
Q ss_pred -------eEEEeecCCcEeEEEeCCCCcee-eeeeeeeeecCCCeEEEEECCCCceeec----ccCCCCceeEeEEcCCC
Q 019847 226 -------CIHGIDAKAQICGLEWNRHHKEI-LSGHGFSASGDGNKLCLWKYPNMTKVGE----LQSSNSRILDLSQSPDG 293 (335)
Q Consensus 226 -------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~i~d~~~~~~~~~----~~~~~~~i~~~~~~~~~ 293 (335)
++..+..+..+..+.|.....+- .-+..+.+.-..+.|....+.....+.. +.....++.++++.|||
T Consensus 238 ~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG 317 (331)
T PF07995_consen 238 SCPGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDG 317 (331)
T ss_dssp S-TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTS
T ss_pred CCCCcCccceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCC
Confidence 11122223344445544332210 0011122223466777777764433221 23445579999999999
Q ss_pred CEEEEEeCCCcEE
Q 019847 294 LTVATAGADETIR 306 (335)
Q Consensus 294 ~~l~~~~~dg~v~ 306 (335)
.++++-+.+|.|.
T Consensus 318 ~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 318 ALYVSDDSDGKIY 330 (331)
T ss_dssp EEEEEE-TTTTEE
T ss_pred eEEEEECCCCeEe
Confidence 9988888888774
No 390
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.42 E-value=0.042 Score=43.68 Aligned_cols=153 Identities=16% Similarity=0.110 Sum_probs=92.4
Q ss_pred CceEEEEcCCCCEEEEEE---CCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEe-cccCCe
Q 019847 60 YPTSVSWSHDAKTLAVGY---MDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHD-VRVSNN 135 (335)
Q Consensus 60 ~v~~~~~~~~~~~l~~~~---~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d-~~~~~~ 135 (335)
.+.+.+++++++.+|... ....++++. .+....... ....+..-.|.+ ++...+....+...+++. ...+..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~--~~~~~~~~~-~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGP--AGGPVRPVL-TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGTG 100 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEc--CCCcceeec-cCCccccccccC-CCCEEEEEcCCCceEEEEecCCCcc
Confidence 688999999999887765 233455554 333333332 234788889999 677777766666666664 222222
Q ss_pred eeEEeec--CCCCEEEEEeecCCCEEEEEe---CCCeEEEEEccCCCcc------cceeeccCCCCCeeEEEecCCCCcE
Q 019847 136 VTSCIKA--HSGEVCGLKWSNEGNLLASGG---DDNVVRIWERSKMSSS------KSLHRFTDHCGGVKALAWSPHQVNV 204 (335)
Q Consensus 136 ~~~~~~~--~~~~i~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~ 204 (335)
....... ....|..+.+||||..+|... .++.|.+--+...... ..+.........+..+.|.+++..+
T Consensus 101 ~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~ 180 (253)
T PF10647_consen 101 EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLV 180 (253)
T ss_pred eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEE
Confidence 1111111 122899999999999888776 3577887765543333 1122222335678999999998644
Q ss_pred EEEecCCCCCeEEE
Q 019847 205 LATGGGREDGCIKI 218 (335)
Q Consensus 205 ~~~~~g~~d~~i~i 218 (335)
+.... .++.+..
T Consensus 181 V~~~~--~~~~~~~ 192 (253)
T PF10647_consen 181 VLGRS--AGGPVVR 192 (253)
T ss_pred EEeCC--CCCceeE
Confidence 44432 4443443
No 391
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.40 E-value=0.062 Score=45.20 Aligned_cols=174 Identities=14% Similarity=0.081 Sum_probs=87.3
Q ss_pred CeEEEEEecCCceeeEEeecC-CCCCceEEEEcCCCCEEEEEEC--------------------CCcEEEEeCCCceeEe
Q 019847 36 PVLFLWKWENGKVKKLLQVPG-EDDYPTSVSWSHDAKTLAVGYM--------------------DSKLQLWDAETSKLVR 94 (335)
Q Consensus 36 ~~i~vw~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~--------------------dg~i~iw~~~~~~~~~ 94 (335)
|.+.+.|-++.+.+....... ....-+.+.|.|..+.+++... -.++.+||+.+.+.++
T Consensus 157 Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q 236 (461)
T PF05694_consen 157 GGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQ 236 (461)
T ss_dssp -EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEE
T ss_pred CcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEee
Confidence 478888877777655554432 2334567888898888888632 3579999999999999
Q ss_pred eecccc--cceeEeeecC--CCCCEEEEeeCCCcEEEEecccCCe-----eeEEe----------------ecCCCCEEE
Q 019847 95 NLEGHH--RRVATSSWNH--WNGHILTSGSKDKSIINHDVRVSNN-----VTSCI----------------KAHSGEVCG 149 (335)
Q Consensus 95 ~~~~~~--~~v~~~~~~~--~~~~~l~~~~~dg~i~~~d~~~~~~-----~~~~~----------------~~~~~~i~~ 149 (335)
.+.-.. .....+.|.. ....-++.+.-..+|..|--..... ++..- ..-..-|+.
T Consensus 237 ~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitD 316 (461)
T PF05694_consen 237 TIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITD 316 (461)
T ss_dssp EEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------
T ss_pred EEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEe
Confidence 887443 3466777754 2233344444555666554422221 11110 001345799
Q ss_pred EEeecCCCEEEEEe-CCCeEEEEEccCCCcccceeecc-C---------------CCCCeeEEEecCCCCcEEEEec
Q 019847 150 LKWSNEGNLLASGG-DDNVVRIWERSKMSSSKSLHRFT-D---------------HCGGVKALAWSPHQVNVLATGG 209 (335)
Q Consensus 150 ~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~-~---------------~~~~v~~~~~~~~~~~~~~~~~ 209 (335)
|..|.|.++|..+. .+|.|+.||+..+...+...... + -.+...-+..|-||+++.++.|
T Consensus 317 I~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 317 ILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred EEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence 99999999887765 58999999999876655543321 0 1123356778888888888754
No 392
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.39 E-value=0.064 Score=45.11 Aligned_cols=252 Identities=14% Similarity=0.116 Sum_probs=113.1
Q ss_pred eEEEEEecC-----CceeeEEeecCCCCCceEEEEc-----------CCCCEEEEEE-CCCcEEEEeCCC----ceeEee
Q 019847 37 VLFLWKWEN-----GKVKKLLQVPGEDDYPTSVSWS-----------HDAKTLAVGY-MDSKLQLWDAET----SKLVRN 95 (335)
Q Consensus 37 ~i~vw~~~~-----~~~~~~~~~~~~~~~v~~~~~~-----------~~~~~l~~~~-~dg~i~iw~~~~----~~~~~~ 95 (335)
.+.+.|++. ++.+....++.-.+.....-|+ .+.++|+..+ ..+.|+|.|+.+ .++.+.
T Consensus 38 ~LatVDvdP~S~tYgqVIhrl~mp~~GDElHH~GWNaCSsc~~~~~~~~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~Kv 117 (461)
T PF05694_consen 38 YLATVDVDPDSPTYGQVIHRLPMPNRGDELHHSGWNACSSCHYGDPSKERRYLILPGLRSSRIYVIDTKTDPRKPRLHKV 117 (461)
T ss_dssp EEEEEE--TTSTTTTSEEEEEE-SSS---B---EES--GGSTT--TT--S-EEEEEBTTT--EEEEE--S-TTS-EEEEE
T ss_pred eEEEEECCCCCCCcccEEEEEeCCCCCCccccccCcccccccCCCCcccCCcEEeeeeccCcEEEEECCCCCCCCceEee
Confidence 355555543 4566666665545566666665 2456887777 678999999873 345555
Q ss_pred ecc---cc----cceeEeeecCCCCCEEEEeeC------CCcEEEEecccCCeeeEEeec---CCCCEEEEEeecCCCEE
Q 019847 96 LEG---HH----RRVATSSWNHWNGHILTSGSK------DKSIINHDVRVSNNVTSCIKA---HSGEVCGLKWSNEGNLL 159 (335)
Q Consensus 96 ~~~---~~----~~v~~~~~~~~~~~~l~~~~~------dg~i~~~d~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l 159 (335)
++. +. .....+-.-| ++++++++-. -|-+.++|-++.+. ...... ....-..+-|.|..+.+
T Consensus 118 Ie~~ev~~k~g~s~PHT~Hclp-~G~imIS~lGd~~G~g~Ggf~llD~~tf~v-~g~We~~~~~~~~gYDfw~qpr~nvM 195 (461)
T PF05694_consen 118 IEPEEVFEKTGLSRPHTVHCLP-DGRIMISALGDADGNGPGGFVLLDGETFEV-KGRWEKDRGPQPFGYDFWYQPRHNVM 195 (461)
T ss_dssp E-HHHHHHHH-EEEEEEEEE-S-S--EEEEEEEETTS-S--EEEEE-TTT--E-EEE--SB-TT------EEEETTTTEE
T ss_pred eCHHHHHhhcCCCCCceeeecC-CccEEEEeccCCCCCCCCcEEEEcCccccc-cceeccCCCCCCCCCCeEEcCCCCEE
Confidence 542 11 2233344445 7888887532 24567777664332 222222 12334677888888888
Q ss_pred EEEeC--------------------CCeEEEEEccCCCcccceeeccCCC--CCeeEEEec--CCCCcEEEEecCCCCCe
Q 019847 160 ASGGD--------------------DNVVRIWERSKMSSSKSLHRFTDHC--GGVKALAWS--PHQVNVLATGGGREDGC 215 (335)
Q Consensus 160 ~~~~~--------------------dg~i~iwd~~~~~~~~~~~~~~~~~--~~v~~~~~~--~~~~~~~~~~~g~~d~~ 215 (335)
++... ..++.+||+.+. +.++++.-.. .-...+.|. |+..+=++.+. ...+
T Consensus 196 iSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r---~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~a--Lss~ 270 (461)
T PF05694_consen 196 ISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTR---KLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCA--LSSS 270 (461)
T ss_dssp EE-B---HHHHTT---TTTHHHH-S--EEEEEETTTT---EEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE----EE
T ss_pred EEeccCChhhcccCCChhHhhcccccCeEEEEECCCC---cEeeEEecCCCCCceEEEEecCCCCccceEEEEe--ccce
Confidence 88642 357999998764 4444443222 224455554 44544444443 4555
Q ss_pred EEEEEC-CCCc----eEEEeec------------------CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCc
Q 019847 216 IKIWNV-QKGT----CIHGIDA------------------KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMT 272 (335)
Q Consensus 216 i~i~d~-~~~~----~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~ 272 (335)
|..|-- +.++ .+..+.. +.-++.+..|.+.++|..++ -..|.++.||+....
T Consensus 271 i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~-----W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 271 IWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSN-----WLHGDVRQYDISDPF 345 (461)
T ss_dssp EEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEE-----TTTTEEEEEE-SSTT
T ss_pred EEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEc-----ccCCcEEEEecCCCC
Confidence 555543 4432 1222211 23478999999999998764 569999999997632
Q ss_pred ---eeeccc----------------CCCCceeEeEEcCCCCEEEEEe
Q 019847 273 ---KVGELQ----------------SSNSRILDLSQSPDGLTVATAG 300 (335)
Q Consensus 273 ---~~~~~~----------------~~~~~i~~~~~~~~~~~l~~~~ 300 (335)
++.++. .-.+...-+..|.||+.|...+
T Consensus 346 ~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 346 NPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp S-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred CCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 222211 0112345678888998877654
No 393
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.38 E-value=0.00088 Score=37.13 Aligned_cols=34 Identities=15% Similarity=0.300 Sum_probs=29.9
Q ss_pred CCCceEEEEcCCCCEEEEEECCCcEEEEeCCCcee
Q 019847 58 DDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKL 92 (335)
Q Consensus 58 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 92 (335)
...|.+++|+|..++||.++.+|.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 456999999999999999999999999998 4443
No 394
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.35 E-value=0.006 Score=56.42 Aligned_cols=148 Identities=16% Similarity=0.088 Sum_probs=97.2
Q ss_pred CCceEEEEcCCCCEEEEEEC--CCcEEEEeCCCceeEe-----eec------ccccceeEeeecCCCCCEEEEeeCCCcE
Q 019847 59 DYPTSVSWSHDAKTLAVGYM--DSKLQLWDAETSKLVR-----NLE------GHHRRVATSSWNHWNGHILTSGSKDKSI 125 (335)
Q Consensus 59 ~~v~~~~~~~~~~~l~~~~~--dg~i~iw~~~~~~~~~-----~~~------~~~~~v~~~~~~~~~~~~l~~~~~dg~i 125 (335)
-++..+...+|+...++... +-.|..||+++-.... -+. .......++.|+|.-....+....|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 34556666778776655443 3378899987532211 111 2234567888998667778888899999
Q ss_pred EEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccC-CCCCeeEEEecCCCCcE
Q 019847 126 INHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTD-HCGGVKALAWSPHQVNV 204 (335)
Q Consensus 126 ~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~ 204 (335)
++..+......... .......++++|+|.|+.++.|-..|++.-|...-. ....+..... ....|.+++|-....++
T Consensus 181 ~V~~~~~~~~~v~s-~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le-ik~~ip~Pp~~e~yrvl~v~Wl~t~efl 258 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTS-FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE-IKSEIPEPPVEENYRVLSVTWLSTQEFL 258 (1405)
T ss_pred hhhhhhhhhhhhcc-cCcccceeeEEeccccceeeEecCCCeEEEeecccc-eeecccCCCcCCCcceeEEEEecceeEE
Confidence 99887654433332 234567899999999999999999999998875422 1112221111 24679999998877666
Q ss_pred EEEe
Q 019847 205 LATG 208 (335)
Q Consensus 205 ~~~~ 208 (335)
++-+
T Consensus 259 vvy~ 262 (1405)
T KOG3630|consen 259 VVYG 262 (1405)
T ss_pred EEec
Confidence 5554
No 395
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.34 E-value=0.0008 Score=50.52 Aligned_cols=103 Identities=11% Similarity=0.165 Sum_probs=67.3
Q ss_pred CceEEEecCCeEEEEEecCC-ceeeEEeecCCCCCceEE-EEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccc-cce
Q 019847 27 NNVLAVALGPVLFLWKWENG-KVKKLLQVPGEDDYPTSV-SWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHH-RRV 103 (335)
Q Consensus 27 ~~~~~~~~~~~i~vw~~~~~-~~~~~~~~~~~~~~v~~~-~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-~~v 103 (335)
..+++++.+|.|++|++... ....... .-...|-++ .--.++.+..+++.||.|+.|++.-.+.+.....|. .++
T Consensus 71 ~~~~vG~~dg~v~~~n~n~~g~~~d~~~--s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~ 148 (238)
T KOG2444|consen 71 AKLMVGTSDGAVYVFNWNLEGAHSDRVC--SGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESG 148 (238)
T ss_pred ceEEeecccceEEEecCCccchHHHhhh--cccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCc
Confidence 46888889999999998621 1111111 112223222 222355688899999999999999888887777777 555
Q ss_pred eEeeecCCCCCEEEEe--eCCCcEEEEeccc
Q 019847 104 ATSSWNHWNGHILTSG--SKDKSIINHDVRV 132 (335)
Q Consensus 104 ~~~~~~~~~~~~l~~~--~~dg~i~~~d~~~ 132 (335)
.....+. .+..+..+ +.|..++.|++..
T Consensus 149 e~~ivv~-sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 149 EELIVVG-SDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ceeEEec-CCceEEeeccccchhhhhcchhh
Confidence 5555555 56666666 6777777777653
No 396
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.28 E-value=0.0017 Score=59.46 Aligned_cols=108 Identities=17% Similarity=0.279 Sum_probs=75.8
Q ss_pred eEEEEcCCCCEEEEEECCCcEEEEeCCCc-eeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEe
Q 019847 62 TSVSWSHDAKTLAVGYMDSKLQLWDAETS-KLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCI 140 (335)
Q Consensus 62 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~ 140 (335)
..++-.-.+..++.|+..|.+-..|+... .+...-....++|++++|+. ++..++.|-.+|.|.+||+..++. .+.+
T Consensus 91 ~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~k~-l~~i 168 (1206)
T KOG2079|consen 91 GVISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRAKI-LKVI 168 (1206)
T ss_pred ceeeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccCCcc-eeee
Confidence 33333335667899999999999887643 21222233567999999998 999999999999999999986554 5556
Q ss_pred ecCCCCEEEEEe---ecCCCEEEEEeCCCeEEEEEc
Q 019847 141 KAHSGEVCGLKW---SNEGNLLASGGDDNVVRIWER 173 (335)
Q Consensus 141 ~~~~~~i~~~~~---~~~~~~l~~~~~dg~i~iwd~ 173 (335)
..|..+.+.+-+ ..++..++++...|. +|.+
T Consensus 169 ~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 169 TEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred eecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 666665554443 345567888887776 5553
No 397
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.23 E-value=0.0017 Score=36.01 Aligned_cols=32 Identities=19% Similarity=0.102 Sum_probs=28.7
Q ss_pred CCceeEeEEcCCCCEEEEEeCCCcEEEEecCC
Q 019847 281 NSRILDLSQSPDGLTVATAGADETIRFWEAFG 312 (335)
Q Consensus 281 ~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~ 312 (335)
...|..++|+|...+||.++.||.|.+|++..
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~ 42 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNW 42 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECCC
Confidence 34689999999999999999999999999943
No 398
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.19 E-value=0.063 Score=40.93 Aligned_cols=135 Identities=10% Similarity=0.116 Sum_probs=86.8
Q ss_pred CCEEEEEeecCCCEEEEEeCC---------CeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCe
Q 019847 145 GEVCGLKWSNEGNLLASGGDD---------NVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGC 215 (335)
Q Consensus 145 ~~i~~~~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~ 215 (335)
...+.-..+|+|++++-.-.| |.++.|-... .+..+...-+--+.++|+.+.+.+..+.+ .+-.
T Consensus 109 nR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h-----~v~~i~~~v~IsNgl~Wd~d~K~fY~iDs--ln~~ 181 (310)
T KOG4499|consen 109 NRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH-----QVELIWNCVGISNGLAWDSDAKKFYYIDS--LNYE 181 (310)
T ss_pred cccccCccCCCCceeeeeeccccccccccccEEEEeccCC-----CceeeehhccCCccccccccCcEEEEEcc--CceE
Confidence 345556678999985432222 4455554321 12222222333467899999888888876 7888
Q ss_pred EEEEE--CCCCce-----EEEeecC-----CcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCc
Q 019847 216 IKIWN--VQKGTC-----IHGIDAK-----AQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSR 283 (335)
Q Consensus 216 i~i~d--~~~~~~-----~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~ 283 (335)
|.-|| ..+|.. +..++.. ...-.++...+|...++. -+.++|...|..+++.+.+++-....
T Consensus 182 V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~------~ng~~V~~~dp~tGK~L~eiklPt~q 255 (310)
T KOG4499|consen 182 VDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVAT------FNGGTVQKVDPTTGKILLEIKLPTPQ 255 (310)
T ss_pred EeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEE------ecCcEEEEECCCCCcEEEEEEcCCCc
Confidence 87787 555533 3333221 123345556666666555 45899999999999999999988889
Q ss_pred eeEeEEcCC
Q 019847 284 ILDLSQSPD 292 (335)
Q Consensus 284 i~~~~~~~~ 292 (335)
|++++|--.
T Consensus 256 itsccFgGk 264 (310)
T KOG4499|consen 256 ITSCCFGGK 264 (310)
T ss_pred eEEEEecCC
Confidence 999999643
No 399
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.16 E-value=0.019 Score=52.96 Aligned_cols=102 Identities=18% Similarity=0.328 Sum_probs=69.0
Q ss_pred CCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCC
Q 019847 112 NGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGG 191 (335)
Q Consensus 112 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 191 (335)
.+..++.|+..|.+...|+...-.....-..-.++|++++|+.+|..++.|-.+|.|.+||+...+. ++.+..|..+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~---l~~i~e~~ap 174 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKI---LKVITEHGAP 174 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcc---eeeeeecCCc
Confidence 5667888999999999998754222222334567999999999999999999999999999887544 4444444443
Q ss_pred ---eeEEEecCCCCcEEEEecCCCCCeEEEEEC
Q 019847 192 ---VKALAWSPHQVNVLATGGGREDGCIKIWNV 221 (335)
Q Consensus 192 ---v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~ 221 (335)
+..+.+..++..++. +. ..|. +|.+
T Consensus 175 ~t~vi~v~~t~~nS~llt-~D--~~Gs--f~~l 202 (1206)
T KOG2079|consen 175 VTGVIFVGRTSQNSKLLT-SD--TGGS--FWKL 202 (1206)
T ss_pred cceEEEEEEeCCCcEEEE-cc--CCCc--eEEE
Confidence 444455555553444 21 3444 6654
No 400
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.13 E-value=0.013 Score=54.40 Aligned_cols=146 Identities=10% Similarity=0.077 Sum_probs=94.4
Q ss_pred CCEEEEEeecCCCEEEEE--eCCCeEEEEEccCCCcccce--eec------cCCCCCeeEEEecCCCCcEEEEecCCCCC
Q 019847 145 GEVCGLKWSNEGNLLASG--GDDNVVRIWERSKMSSSKSL--HRF------TDHCGGVKALAWSPHQVNVLATGGGREDG 214 (335)
Q Consensus 145 ~~i~~~~~~~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~--~~~------~~~~~~v~~~~~~~~~~~~~~~~~g~~d~ 214 (335)
-++..+...+|+...++. +.+-.|..||++........ ..+ ........++.|+|.-....+.+. .|+
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l--~dl 178 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDL--SDL 178 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhc--ccc
Confidence 456666667776655443 33447999998864332211 111 112234568889998665556555 799
Q ss_pred eEEEEECCCC-ceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccC----CCCceeEeEE
Q 019847 215 CIKIWNVQKG-TCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQS----SNSRILDLSQ 289 (335)
Q Consensus 215 ~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~----~~~~i~~~~~ 289 (335)
.|++..+... ..+..++.....++++|+|.|+.++.| ...|++.-|... ++....+.. ....|.++.|
T Consensus 179 sl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG------~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~W 251 (1405)
T KOG3630|consen 179 SLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIG------RNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTW 251 (1405)
T ss_pred chhhhhhhhhhhhhcccCcccceeeEEeccccceeeEe------cCCCeEEEeecc-cceeecccCCCcCCCcceeEEEE
Confidence 9999877543 233445667789999999999999998 568888888743 333233221 1357999999
Q ss_pred cCCCCEEEEE
Q 019847 290 SPDGLTVATA 299 (335)
Q Consensus 290 ~~~~~~l~~~ 299 (335)
-....++++-
T Consensus 252 l~t~eflvvy 261 (1405)
T KOG3630|consen 252 LSTQEFLVVY 261 (1405)
T ss_pred ecceeEEEEe
Confidence 8877777654
No 401
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=97.12 E-value=0.07 Score=40.32 Aligned_cols=147 Identities=12% Similarity=0.074 Sum_probs=87.7
Q ss_pred eeeecC-CceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECC---C---cEEEEe-CC----
Q 019847 21 VIDWGR-NNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMD---S---KLQLWD-AE---- 88 (335)
Q Consensus 21 ~~~~~~-~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g---~i~iw~-~~---- 88 (335)
.++-++ +.++.+.....|.+|++...+......++. -+.|..+.++..|+||++--.+ . .+|+|- .+
T Consensus 22 ~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~ 100 (215)
T PF14761_consen 22 AVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKE 100 (215)
T ss_pred eeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcc
Confidence 355556 677777888999999999666666666654 3789999999999999996322 2 566662 11
Q ss_pred CceeEe-eec---------------------ccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeee---EEee--
Q 019847 89 TSKLVR-NLE---------------------GHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVT---SCIK-- 141 (335)
Q Consensus 89 ~~~~~~-~~~---------------------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~---~~~~-- 141 (335)
..+++. .+- .-..++.+++..|..|++++.+ ++.+.+|.+....... ..+.
T Consensus 101 ~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~--~~~l~lf~l~~~~~~~~~~~~lDFe 178 (215)
T PF14761_consen 101 ENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC--GNKLVLFTLKYQTIQSEKFSFLDFE 178 (215)
T ss_pred cCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc--CCEEEEEEEEEEEEecccccEEech
Confidence 111111 010 1245778888888777777644 5678888775322100 0000
Q ss_pred ----cC-C-CCEEEEEeecCCCEEEEEeCCCeEEEEEc
Q 019847 142 ----AH-S-GEVCGLKWSNEGNLLASGGDDNVVRIWER 173 (335)
Q Consensus 142 ----~~-~-~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 173 (335)
.| . -....+++. +.++|..+ +-.++++.+
T Consensus 179 ~~l~~~~~~~~p~~v~ic--~~yiA~~s-~~ev~Vlkl 213 (215)
T PF14761_consen 179 RSLIDHIDNFKPTQVAIC--EGYIAVMS-DLEVLVLKL 213 (215)
T ss_pred hhhhheecCceEEEEEEE--eeEEEEec-CCEEEEEEE
Confidence 11 1 123444544 45777766 556777654
No 402
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=97.01 E-value=0.2 Score=43.74 Aligned_cols=153 Identities=15% Similarity=0.192 Sum_probs=92.2
Q ss_pred CCceEEEEcCCCCEEEEEE---CCCcEEEEeCCCceeEeeecccccceeEeeecCC---CCCEEEEeeCCCcEEEEeccc
Q 019847 59 DYPTSVSWSHDAKTLAVGY---MDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHW---NGHILTSGSKDKSIINHDVRV 132 (335)
Q Consensus 59 ~~v~~~~~~~~~~~l~~~~---~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~~dg~i~~~d~~~ 132 (335)
-++..++|. ||+.++-.. .+|.+++=| .+.+..| +.|..+.|.|. +..-+++......|.+|.+..
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 357889997 666554432 233333322 1233333 46888999883 233455556678999999852
Q ss_pred -----CCeeeEEeecC----CCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCc
Q 019847 133 -----SNNVTSCIKAH----SGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVN 203 (335)
Q Consensus 133 -----~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 203 (335)
.+.+....-.. .---..+.|+|....|++-.....-.+++++.... .....+ ...+-|.|.+|.+||.+
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~s-rVkaDi-~~~G~IhCACWT~DG~R 169 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSS-RVKADI-KTSGLIHCACWTKDGQR 169 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCc-eEEEec-cCCceEEEEEecCcCCE
Confidence 12111111111 11224678999988888877665555666664332 222223 35678999999999999
Q ss_pred EEEEecCCCCCeEEEEECCC
Q 019847 204 VLATGGGREDGCIKIWNVQK 223 (335)
Q Consensus 204 ~~~~~~g~~d~~i~i~d~~~ 223 (335)
++++-+ ..=.-++||-..
T Consensus 170 LVVAvG--SsLHSyiWd~~q 187 (671)
T PF15390_consen 170 LVVAVG--SSLHSYIWDSAQ 187 (671)
T ss_pred EEEEeC--CeEEEEEecCch
Confidence 988875 555678898543
No 403
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=97.00 E-value=0.0025 Score=57.41 Aligned_cols=158 Identities=18% Similarity=0.268 Sum_probs=94.3
Q ss_pred CeEEEEEec--CCceeeEEee---cCCCCCceEEEEcC---CCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEee
Q 019847 36 PVLFLWKWE--NGKVKKLLQV---PGEDDYPTSVSWSH---DAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSS 107 (335)
Q Consensus 36 ~~i~vw~~~--~~~~~~~~~~---~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~ 107 (335)
|.+.||+++ .|++.+.+.+ ..-...+.-+.|+| +.-++..+-.++.+++.+..+... ..+..|...+..++
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a 231 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMA 231 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHH
Confidence 578899876 4554333322 12234456666666 566778888889999888765443 55666888888888
Q ss_pred ecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCC--Ccccceeec
Q 019847 108 WNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKM--SSSKSLHRF 185 (335)
Q Consensus 108 ~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~ 185 (335)
|.. .+-+.+.+ .+|||..|+++..||.+++|.+.-. ....+++..
T Consensus 232 ~~~-~g~~~l~~--------------------------------lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhew 278 (1283)
T KOG1916|consen 232 FFA-EGVLKLAS--------------------------------LSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEW 278 (1283)
T ss_pred HHh-hchhhhee--------------------------------eCCCCcEEEEeecCCccceeeeeeeccccHhhhhcc
Confidence 875 33222211 6789999999999998888875422 223445555
Q ss_pred cCCC-CCeeEEEecCC-------CCcEEEEecCCCCCeEEEEECCCCceE
Q 019847 186 TDHC-GGVKALAWSPH-------QVNVLATGGGREDGCIKIWNVQKGTCI 227 (335)
Q Consensus 186 ~~~~-~~v~~~~~~~~-------~~~~~~~~~g~~d~~i~i~d~~~~~~~ 227 (335)
+.|. .+-.|.-++.+ +.+.+...+...+..+++|.....+|+
T Consensus 279 kphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 279 KPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred CCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 6665 33323223322 111222221235677888887766665
No 404
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.99 E-value=0.12 Score=40.86 Aligned_cols=161 Identities=16% Similarity=0.222 Sum_probs=109.5
Q ss_pred CcccccceeeeecCC--ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCc
Q 019847 13 LMEDYYSKVIDWGRN--NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETS 90 (335)
Q Consensus 13 ~~~~~~~~~~~~~~~--~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 90 (335)
......+.++.|+++ .++++.....-.|+=-..|+....+.+.+-.+ .-.+++..++++.++--.++.+.++.+...
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~D-pE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSD-PETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCC-hhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 334455888999984 57777777777777667889888888877433 467888888888888778888988877654
Q ss_pred eeEeee----------cccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeee--EEeec-------CCCCEEEEE
Q 019847 91 KLVRNL----------EGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVT--SCIKA-------HSGEVCGLK 151 (335)
Q Consensus 91 ~~~~~~----------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~--~~~~~-------~~~~i~~~~ 151 (335)
..+..+ ...+...-.++|.| ....|+.+-+-.-+.+|......... ..... .-..+.++.
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~ 239 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDP-VDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE 239 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCC-CCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence 322211 11256788999999 77777777777777777765333111 11111 123467788
Q ss_pred eec-CCCEEEEEeCCCeEEEEEccC
Q 019847 152 WSN-EGNLLASGGDDNVVRIWERSK 175 (335)
Q Consensus 152 ~~~-~~~~l~~~~~dg~i~iwd~~~ 175 (335)
|++ .+.+|+-+.+++.+.-.|...
T Consensus 240 ~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 240 FNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred ecCCCCcEEEEecCCceEEEEecCC
Confidence 887 567777788888888888664
No 405
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.90 E-value=0.22 Score=42.34 Aligned_cols=51 Identities=18% Similarity=0.148 Sum_probs=38.6
Q ss_pred CCceEEEEcC-----------CCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecC
Q 019847 59 DYPTSVSWSH-----------DAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNH 110 (335)
Q Consensus 59 ~~v~~~~~~~-----------~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~ 110 (335)
..|+++.+-| |...+++|..+|.|++|.. +|.++..-.-|..+|..+....
T Consensus 57 e~ITsi~clpl~s~~~s~~~~dw~~I~VG~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 57 ECITSILCLPLSSQKRSTGGPDWTCIAVGTSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred CEEEEEEEEEeecccccCCCCCcEEEEEEecccEEEEEec-cchHHHHHhcCccceEEEEecc
Confidence 5677776643 3568899999999999984 6777666666888888888743
No 406
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.89 E-value=0.15 Score=40.16 Aligned_cols=186 Identities=12% Similarity=0.147 Sum_probs=104.4
Q ss_pred cccceeeee-cCCceEEEe-c--CCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCce
Q 019847 16 DYYSKVIDW-GRNNVLAVA-L--GPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSK 91 (335)
Q Consensus 16 ~~~~~~~~~-~~~~~~~~~-~--~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 91 (335)
..+...+.+ +++.++-++ . ...|+.+|+.+++......++.. ----.++.. +++.....-.++...+||.++.+
T Consensus 44 ~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~-~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~ 121 (264)
T PF05096_consen 44 TAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPR-YFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLK 121 (264)
T ss_dssp T-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT---EEEEEEE-TTEEEEEESSSSEEEEEETTTTE
T ss_pred cccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcc-ccceeEEEE-CCEEEEEEecCCeEEEEccccce
Confidence 345666777 555555544 2 34899999999998877777542 112334443 23333444478899999999999
Q ss_pred eEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEee-cCC---CCEEEEEeecCCCEEEEEeCCCe
Q 019847 92 LVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIK-AHS---GEVCGLKWSNEGNLLASGGDDNV 167 (335)
Q Consensus 92 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~-~~~---~~i~~~~~~~~~~~l~~~~~dg~ 167 (335)
.+.++.- ...=+.++. ++..|+.......++++|..+-+......- ... ..++.+.|. +|...|=.-....
T Consensus 122 ~~~~~~y-~~EGWGLt~---dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~ 196 (264)
T PF05096_consen 122 KIGTFPY-PGEGWGLTS---DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDR 196 (264)
T ss_dssp EEEEEE--SSS--EEEE---CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSE
T ss_pred EEEEEec-CCcceEEEc---CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCe
Confidence 9888863 355566664 677788777788999999876544222111 111 234555554 4444444434444
Q ss_pred EEEEEccCCCcccce------eec------cCCCCCeeEEEecCCCCcEEEEe
Q 019847 168 VRIWERSKMSSSKSL------HRF------TDHCGGVKALAWSPHQVNVLATG 208 (335)
Q Consensus 168 i~iwd~~~~~~~~~~------~~~------~~~~~~v~~~~~~~~~~~~~~~~ 208 (335)
|..-|..++.....+ ... .....-.+.+++.|..+.++++|
T Consensus 197 I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 197 IVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 555554433211110 000 01134578999999999999987
No 407
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.85 E-value=0.33 Score=43.61 Aligned_cols=199 Identities=7% Similarity=0.028 Sum_probs=102.5
Q ss_pred CcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeee--EEeecCCCCEEEEEeecCCC
Q 019847 80 SKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVT--SCIKAHSGEVCGLKWSNEGN 157 (335)
Q Consensus 80 g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~--~~~~~~~~~i~~~~~~~~~~ 157 (335)
-.|+||+. +|+++..+.-....+..+.|+ +...|++-..+|++++|++-...... .-.......|..+.+..+|-
T Consensus 64 ~~I~If~~-sG~lL~~~~w~~~~lI~mgWs--~~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GV 140 (829)
T KOG2280|consen 64 PYIRIFNI-SGQLLGRILWKHGELIGMGWS--DDEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGV 140 (829)
T ss_pred eeEEEEec-cccchHHHHhcCCCeeeeccc--CCceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCce
Confidence 45888886 466666655555588899998 56677888999999999986322111 00122334466666665654
Q ss_pred EEEEEeCCCeEEEE-EccCCCcccceeeccCCCCCeeEEEecCCCC--cE-EEEecCCCCC-eEEEEECCCCceEEEeec
Q 019847 158 LLASGGDDNVVRIW-ERSKMSSSKSLHRFTDHCGGVKALAWSPHQV--NV-LATGGGREDG-CIKIWNVQKGTCIHGIDA 232 (335)
Q Consensus 158 ~l~~~~~dg~i~iw-d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~-~~~~~g~~d~-~i~i~d~~~~~~~~~~~~ 232 (335)
.+.+ .+|.+.+- +...+. ...+........+-.|....+++. .+ +...- ..+ .+..-+....+...-...
T Consensus 141 avlt--~~g~v~~i~~~~~~~-~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~--~v~~~~~q~~~~~~q~~~~~~~ 215 (829)
T KOG2280|consen 141 AVLT--VSGQVILINGVEEPK-LRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDV--AVGLHICQVEESRVQLHALSWP 215 (829)
T ss_pred EEEe--cCCcEEEEcCCCcch-hhhCCCCCCccCCCcceeEecCCCcceeEEeech--hhhhcccceecccccccccCCC
Confidence 3333 34544443 322211 111111111111222332222221 11 11100 000 011111111122211223
Q ss_pred CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeeccc--CCCCceeEeEEcCCC
Q 019847 233 KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQ--SSNSRILDLSQSPDG 293 (335)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~~ 293 (335)
+..+..+..||+.++++.- .+.|.|.+-+.+..+....+. .|.. ...++|.-+.
T Consensus 216 ~~~~~ki~VS~n~~~laLy------t~~G~i~~vs~D~~~~lce~~~~~~~~-p~qm~Wcgnd 271 (829)
T KOG2280|consen 216 NSSVVKISVSPNRRFLALY------TETGKIWVVSIDLSQILCEFNCTDHDP-PKQMAWCGND 271 (829)
T ss_pred CceEEEEEEcCCcceEEEE------ecCCcEEEEecchhhhhhccCCCCCCc-hHhceeecCC
Confidence 4678889999999998866 668999998888777766655 2222 2355555443
No 408
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=96.78 E-value=0.19 Score=39.84 Aligned_cols=198 Identities=13% Similarity=0.082 Sum_probs=122.4
Q ss_pred cccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecC-CCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCC
Q 019847 99 HHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAH-SGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMS 177 (335)
Q Consensus 99 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 177 (335)
...-+..+.+ .+++...+..+.-+++.|+.+...+...-.-. .+--.++ .-.|++..++..|.-+.+.|+.++.
T Consensus 85 ~~~l~~Dv~v---se~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv--~vsGn~aYVadlddgfLivdvsdps 159 (370)
T COG5276 85 ARDLFADVRV---SEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGV--YVSGNYAYVADLDDGFLIVDVSDPS 159 (370)
T ss_pred hhhhhheeEe---cccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEE--EecCCEEEEeeccCcEEEEECCCCC
Confidence 4456777778 56778888888899999998776544332211 2333343 3457888888877778899999887
Q ss_pred cccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCc---eEEEeecCCcEeEEEeCCCCceeeeeeee
Q 019847 178 SSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGT---CIHGIDAKAQICGLEWNRHHKEILSGHGF 254 (335)
Q Consensus 178 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (335)
..............-..++.+-+ +-..+. .|+-+.+-|+.+.. .+........+.++..+++..+++..
T Consensus 160 sP~lagrya~~~~d~~~v~ISGn--~AYvA~---~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy--- 231 (370)
T COG5276 160 SPQLAGRYALPGGDTHDVAISGN--YAYVAW---RDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVY--- 231 (370)
T ss_pred CceeeeeeccCCCCceeEEEecC--eEEEEE---eCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEc---
Confidence 76666555554444456666644 344444 68899999987643 34444455578888888888877765
Q ss_pred eeecCCCeEEEEECCCCceeeccc--CCCC--ceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCC
Q 019847 255 SASGDGNKLCLWKYPNMTKVGELQ--SSNS--RILDLSQSPDGLTVATAGADETIRFWEAFGPSGD 316 (335)
Q Consensus 255 ~~~~~~~~i~i~d~~~~~~~~~~~--~~~~--~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~ 316 (335)
+..+.+-|..+.+....+. .... .++.+.. .+++...+..+.-+.+-|++++...
T Consensus 232 -----~egvlivd~s~~ssp~~~gsyet~~p~~~s~v~V--s~~~~Yvadga~gl~~idisnp~sp 290 (370)
T COG5276 232 -----DEGVLIVDVSGPSSPTVFGSYETSNPVSISTVPV--SGEYAYVADGAKGLPIIDISNPPSP 290 (370)
T ss_pred -----ccceEEEecCCCCCceEeeccccCCcccccceec--ccceeeeeccccCceeEeccCCCCC
Confidence 5566666766555332221 1111 1222233 3345555555556666666665443
No 409
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.74 E-value=0.11 Score=47.72 Aligned_cols=28 Identities=11% Similarity=-0.044 Sum_probs=21.4
Q ss_pred CCceEEEEcCCCCEEEEEECCCcEEEEeC
Q 019847 59 DYPTSVSWSHDAKTLAVGYMDSKLQLWDA 87 (335)
Q Consensus 59 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~ 87 (335)
-.|..+.++|+|.++|..+..| |.|-.+
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~L 112 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLEL 112 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEe
Confidence 4578889999999999888765 555544
No 410
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.69 E-value=0.23 Score=39.68 Aligned_cols=227 Identities=11% Similarity=0.135 Sum_probs=126.0
Q ss_pred CceEEEEcCCCCEEEEEECCCcEEEEeCC------Cc-eeEeeecc-----cccceeEeeecCCC-----------CCEE
Q 019847 60 YPTSVSWSHDAKTLAVGYMDSKLQLWDAE------TS-KLVRNLEG-----HHRRVATSSWNHWN-----------GHIL 116 (335)
Q Consensus 60 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~------~~-~~~~~~~~-----~~~~v~~~~~~~~~-----------~~~l 116 (335)
....++++|.+.+-++....+...+||.. .. .++-.+.. .....+.+.|+... ...+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 35789999999888888888999999986 12 22333331 23467777776421 1236
Q ss_pred EEeeCCCcEEEEecccCCe----eeEEee-cCCCCE-EEEEeec--CCCEEEEE-eCCCeEEEEEccCCCcccceeeccC
Q 019847 117 TSGSKDKSIINHDVRVSNN----VTSCIK-AHSGEV-CGLKWSN--EGNLLASG-GDDNVVRIWERSKMSSSKSLHRFTD 187 (335)
Q Consensus 117 ~~~~~dg~i~~~d~~~~~~----~~~~~~-~~~~~i-~~~~~~~--~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~ 187 (335)
+.+++||+|.-|....... ....+. ...+.| ..+++.. .+.+|..+ -..++|.+||-.-. ++..-..
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~----~~~~~g~ 179 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFR----PPPLPGS 179 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccc----cccCCCC
Confidence 7789999999999643222 111121 122333 3455543 34555544 45789999984321 1110000
Q ss_pred CCCCeeEEEecCC-----CCcEEEEec-----------CCCCCeEEEEECCCCceEEEeecCC---cEeEEEeCCCCcee
Q 019847 188 HCGGVKALAWSPH-----QVNVLATGG-----------GREDGCIKIWNVQKGTCIHGIDAKA---QICGLEWNRHHKEI 248 (335)
Q Consensus 188 ~~~~v~~~~~~~~-----~~~~~~~~~-----------g~~d~~i~i~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 248 (335)
..++-.-.-|.|- +..++++.. |.--|.|-+||+. |+.++++.... ....++..|..---
T Consensus 180 F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~ 258 (336)
T TIGR03118 180 FIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGS 258 (336)
T ss_pred ccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCC
Confidence 0111000011111 122333321 1234789999965 88888886654 34556665543222
Q ss_pred eeeeeeeeecCCCeEEEEECCCCceeecccCCCC------ceeEeEEcC
Q 019847 249 LSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNS------RILDLSQSP 291 (335)
Q Consensus 249 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~------~i~~~~~~~ 291 (335)
+++..+...-.||+|..||..+++.+..+....+ .+..|+|-.
T Consensus 259 ~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 259 LSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 2222222224599999999999998877765443 356677754
No 411
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.67 E-value=0.35 Score=41.32 Aligned_cols=273 Identities=10% Similarity=0.067 Sum_probs=149.4
Q ss_pred CceEEEecCCeEEEEEecCCcee--eEEeecCCCCCceEEEEcC-----CCCEEEEEECCCcEEEEeCCC--ce------
Q 019847 27 NNVLAVALGPVLFLWKWENGKVK--KLLQVPGEDDYPTSVSWSH-----DAKTLAVGYMDSKLQLWDAET--SK------ 91 (335)
Q Consensus 27 ~~~~~~~~~~~i~vw~~~~~~~~--~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~iw~~~~--~~------ 91 (335)
+.+++++..|.++||+...+... ..+--..-+.+|..++.-+ +...||+ -.-..+.||.+.. +.
T Consensus 38 d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g~~ 116 (418)
T PF14727_consen 38 DKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHGNQ 116 (418)
T ss_pred cEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccCcE
Confidence 46888999999999998654422 1211123457788887543 2234454 4456788888731 11
Q ss_pred -eEeeeccccc--ceeEee---ecCCC-CCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeC
Q 019847 92 -LVRNLEGHHR--RVATSS---WNHWN-GHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGD 164 (335)
Q Consensus 92 -~~~~~~~~~~--~v~~~~---~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 164 (335)
.+..+..|.- ....++ |-... .+.+.+-+.||.+.+|+-+.-. ....+.. ---...+.|.+.-..|++++.
T Consensus 117 ~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~-f~~~lp~-~llPgPl~Y~~~tDsfvt~ss 194 (418)
T PF14727_consen 117 YQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFA-FSRFLPD-FLLPGPLCYCPRTDSFVTASS 194 (418)
T ss_pred EEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEE-EEEEcCC-CCCCcCeEEeecCCEEEEecC
Confidence 1222223322 222232 32212 5788899999999999965321 1222222 222344778888889999999
Q ss_pred CCeEEEEEccCCCcc-----------------cce---eeccCCCCCee---EEEecCCCCcEEEEecCCCCCeEEEEEC
Q 019847 165 DNVVRIWERSKMSSS-----------------KSL---HRFTDHCGGVK---ALAWSPHQVNVLATGGGREDGCIKIWNV 221 (335)
Q Consensus 165 dg~i~iwd~~~~~~~-----------------~~~---~~~~~~~~~v~---~~~~~~~~~~~~~~~~g~~d~~i~i~d~ 221 (335)
+..+.-|........ +.+ -++. -..++. .+.++.....+++.| ...+.+.+.
T Consensus 195 s~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~n-lGE~~l~i~v~~~~~~~~~IvvLg----er~Lf~l~~ 269 (418)
T PF14727_consen 195 SWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFN-LGEQALDIQVVRFSSSESDIVVLG----ERSLFCLKD 269 (418)
T ss_pred ceeEEEecHHHhhhccccccccccccccccccccccceeEEE-CCceeEEEEEEEcCCCCceEEEEe----cceEEEEcC
Confidence 989998875321110 000 0000 112222 333433444566665 677888875
Q ss_pred CCCceEEEeecCCcEeEEEe-------CCCCc-eeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeE---Ec
Q 019847 222 QKGTCIHGIDAKAQICGLEW-------NRHHK-EILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLS---QS 290 (335)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~-------~~~~~-~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~---~~ 290 (335)
+|......+.+....++.. .|... .++. ++.++.+.||.-.+ ++...+....+| ++. |.
T Consensus 270 -~G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV------~t~t~~LlVy~d~~--L~WsA~l~~~PV-al~v~~~~ 339 (418)
T PF14727_consen 270 -NGSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLV------GTHTGTLLVYEDTT--LVWSAQLPHVPV-ALSVANFN 339 (418)
T ss_pred -CCeEEEEEecCCceeeEEEEEeecccCCCCceEEEE------EecCCeEEEEeCCe--EEEecCCCCCCE-EEEecccC
Confidence 5666555555544333321 11211 2333 37799999997443 222222222332 333 33
Q ss_pred CCCCEEEEEeCCCcEEEEecCCCCCCC
Q 019847 291 PDGLTVATAGADETIRFWEAFGPSGDE 317 (335)
Q Consensus 291 ~~~~~l~~~~~dg~v~iw~~~~~~~~~ 317 (335)
.-...|++-+.+|.+.+-=+.+.+...
T Consensus 340 ~~~G~IV~Ls~~G~L~v~YLGTdPs~~ 366 (418)
T PF14727_consen 340 GLKGLIVSLSDEGQLSVSYLGTDPSLF 366 (418)
T ss_pred CCCceEEEEcCCCcEEEEEeCCCCccc
Confidence 334578888999999998777655433
No 412
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=96.63 E-value=0.064 Score=45.72 Aligned_cols=144 Identities=18% Similarity=0.223 Sum_probs=92.3
Q ss_pred CCCEEE-EEECCCcEEEEeCCCceeEeeecccccceeEeeecCCC------CCEEEEeeCCCcEEEEecccCCeeeEEee
Q 019847 69 DAKTLA-VGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWN------GHILTSGSKDKSIINHDVRVSNNVTSCIK 141 (335)
Q Consensus 69 ~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~~l~~~~~dg~i~~~d~~~~~~~~~~~~ 141 (335)
+..+|. .|.....++--|++.|+.+.++..|... -+.|.|.. ...-+.|-.+..|.-.|.+.....+...
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~- 554 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVV- 554 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeee-
Confidence 444444 3455667888899999999999877655 56676621 2233455666777777776544222211
Q ss_pred cCCCCEEEEEee----cCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEE
Q 019847 142 AHSGEVCGLKWS----NEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIK 217 (335)
Q Consensus 142 ~~~~~i~~~~~~----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~ 217 (335)
......+.-.|+ ....++|+++..|.|++||--.. .....+.+....|..+..+.+|++++++| ...+.
T Consensus 555 esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~---rAKtalP~lG~aIk~idvta~Gk~ilaTC----k~yll 627 (776)
T COG5167 555 ESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGK---RAKTALPGLGDAIKHIDVTANGKHILATC----KNYLL 627 (776)
T ss_pred eehhccccccccccccccCceEEEecCCCceeeehhhcc---hhhhcCcccccceeeeEeecCCcEEEEee----cceEE
Confidence 122222222222 24569999999999999994321 22233445567789999999999999997 57888
Q ss_pred EEECC
Q 019847 218 IWNVQ 222 (335)
Q Consensus 218 i~d~~ 222 (335)
+-|++
T Consensus 628 L~d~~ 632 (776)
T COG5167 628 LTDVP 632 (776)
T ss_pred EEecc
Confidence 88875
No 413
>PRK10115 protease 2; Provisional
Probab=96.61 E-value=0.59 Score=43.22 Aligned_cols=241 Identities=8% Similarity=0.007 Sum_probs=115.3
Q ss_pred CceEEEEcCCCCEEEEEEC-----CCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeC-C-----CcEEEE
Q 019847 60 YPTSVSWSHDAKTLAVGYM-----DSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSK-D-----KSIINH 128 (335)
Q Consensus 60 ~v~~~~~~~~~~~l~~~~~-----dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d-----g~i~~~ 128 (335)
.+..+.++|++++|+.+.. ...|++.|+.+++.+...-.... ..++|.+ +++.|+.... + ..|+.+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~-D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWAN-DSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEee-CCCEEEEEEecCCCCCCCEEEEE
Confidence 3667889999999987643 23688999988864322211111 4589998 6655544432 2 367778
Q ss_pred ecccCCe-eeEEeecCCCCEE-EEEeecCCCEEEEEeC---CCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCc
Q 019847 129 DVRVSNN-VTSCIKAHSGEVC-GLKWSNEGNLLASGGD---DNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVN 203 (335)
Q Consensus 129 d~~~~~~-~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 203 (335)
++.++.. ....+........ ....+.++++++..+. ++.+.+++...... ..........+....+. +..+..
T Consensus 205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~l 282 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADA-EPFVFLPRRKDHEYSLD-HYQHRF 282 (686)
T ss_pred ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCC-CceEEEECCCCCEEEEE-eCCCEE
Confidence 8876632 2223333333333 2333447777665543 34688888543221 11111111122222222 333333
Q ss_pred EEEEecCCCCCeEEEEECCC-CceEEEeec--CCcEeEEEeCCCCceeeeeeeeeeecCCCe--EEEEECCCCceeeccc
Q 019847 204 VLATGGGREDGCIKIWNVQK-GTCIHGIDA--KAQICGLEWNRHHKEILSGHGFSASGDGNK--LCLWKYPNMTKVGELQ 278 (335)
Q Consensus 204 ~~~~~~g~~d~~i~i~d~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~i~d~~~~~~~~~~~ 278 (335)
++.+..+.....|...++.+ ++....+.. ...+..+.+. +..++... ..++. +.+++...+ .+..+.
T Consensus 283 y~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~-----~~~g~~~l~~~~~~~~-~~~~l~ 354 (686)
T PRK10115 283 YLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEE-----RQRGLTSLRQINRKTR-EVIGIA 354 (686)
T ss_pred EEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEE-----EeCCEEEEEEEcCCCC-ceEEec
Confidence 33332222333455555552 222223333 2357777776 33333321 33444 444554333 233332
Q ss_pred -CCCCceeEeEEc--CCC-CEEEEEe---CCCcEEEEecCCC
Q 019847 279 -SSNSRILDLSQS--PDG-LTVATAG---ADETIRFWEAFGP 313 (335)
Q Consensus 279 -~~~~~i~~~~~~--~~~-~~l~~~~---~dg~v~iw~~~~~ 313 (335)
.....+..+.++ +++ .++++.+ .-+.+..+|+.++
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~ 396 (686)
T PRK10115 355 FDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG 396 (686)
T ss_pred CCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCC
Confidence 222223333344 333 3444443 2356777777654
No 414
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.61 E-value=0.17 Score=45.24 Aligned_cols=116 Identities=12% Similarity=0.135 Sum_probs=73.3
Q ss_pred cceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEee--cCCCEEEEEeCCCeEEEEEcc----
Q 019847 101 RRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWS--NEGNLLASGGDDNVVRIWERS---- 174 (335)
Q Consensus 101 ~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~dg~i~iwd~~---- 174 (335)
....-+.-+. -++..++-+....+.|||.+.+...........+.|.++.|. |+++.+++.+....|.+|.-.
T Consensus 30 ~~~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 30 SNPSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CCcceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 3444444444 444445545556899999986653333333457899999995 488989888999999998532
Q ss_pred --CCCcccceeec--cCC-CCCeeEEEecCCCCcEEEEecCCCCCeEEEEECC
Q 019847 175 --KMSSSKSLHRF--TDH-CGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQ 222 (335)
Q Consensus 175 --~~~~~~~~~~~--~~~-~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~ 222 (335)
.......+..+ ..+ ..+|.+..|.++|. +++. .++.+.++|-.
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~-LvV~----sGNqlfv~dk~ 156 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGT-LVVG----SGNQLFVFDKW 156 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCCe-EEEE----eCCEEEEECCC
Confidence 11112222222 223 36799999999994 3333 25789998753
No 415
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.60 E-value=0.18 Score=44.03 Aligned_cols=114 Identities=16% Similarity=0.232 Sum_probs=73.9
Q ss_pred CCceEEEEcCC----CCEEEEEECCCcEEEEeCC-----CceeEeeeccc---cc--ceeEeeecCCCCCEEEEeeCCCc
Q 019847 59 DYPTSVSWSHD----AKTLAVGYMDSKLQLWDAE-----TSKLVRNLEGH---HR--RVATSSWNHWNGHILTSGSKDKS 124 (335)
Q Consensus 59 ~~v~~~~~~~~----~~~l~~~~~dg~i~iw~~~-----~~~~~~~~~~~---~~--~v~~~~~~~~~~~~l~~~~~dg~ 124 (335)
..|..+.|.|- ...|++......|.||.+. +.+.+..-..+ .- -...+.|+| ...+|+.-.....
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP-k~~iL~VLT~~dv 135 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP-KKAILTVLTARDV 135 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccC-CCceEEEEecCce
Confidence 45899999994 3345555567789999875 22322221111 11 234578999 8888877776666
Q ss_pred EEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCC-CeEEEEEc
Q 019847 125 IINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDD-NVVRIWER 173 (335)
Q Consensus 125 i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~i~iwd~ 173 (335)
-.+++++......+.--...+.|.|.+|.+||+.|+++-.. =.-++||-
T Consensus 136 SV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 136 SVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred eEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence 56777765554444434567889999999999988776433 34578883
No 416
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=96.59 E-value=0.27 Score=39.06 Aligned_cols=156 Identities=13% Similarity=0.041 Sum_probs=96.9
Q ss_pred eeeecCCceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCce---eEeeec
Q 019847 21 VIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSK---LVRNLE 97 (335)
Q Consensus 21 ~~~~~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~---~~~~~~ 97 (335)
-+.++++..+.+-.+..++|.|+.+...-....+-.-...-++ +.-.|++..++..|.-+.+.|+.+.. +.....
T Consensus 91 Dv~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyayg--v~vsGn~aYVadlddgfLivdvsdpssP~lagrya 168 (370)
T COG5276 91 DVRVSEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYG--VYVSGNYAYVADLDDGFLIVDVSDPSSPQLAGRYA 168 (370)
T ss_pred eeEecccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEE--EEecCCEEEEeeccCcEEEEECCCCCCceeeeeec
Confidence 3556777777888888999999987654222222111122233 44478888888866668888887543 333444
Q ss_pred ccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEe-ecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCC
Q 019847 98 GHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCI-KAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKM 176 (335)
Q Consensus 98 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 176 (335)
........++. .+++-..+..|+-+.+-|+.....+...- ......+.++..+++..+++.. +--+.+-|...+
T Consensus 169 ~~~~d~~~v~I---SGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy--~egvlivd~s~~ 243 (370)
T COG5276 169 LPGGDTHDVAI---SGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVY--DEGVLIVDVSGP 243 (370)
T ss_pred cCCCCceeEEE---ecCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEc--ccceEEEecCCC
Confidence 33344455665 57788888899999999998665433221 2233467888877775555554 334777787765
Q ss_pred Cccccee
Q 019847 177 SSSKSLH 183 (335)
Q Consensus 177 ~~~~~~~ 183 (335)
.....+-
T Consensus 244 ssp~~~g 250 (370)
T COG5276 244 SSPTVFG 250 (370)
T ss_pred CCceEee
Confidence 5433333
No 417
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.42 E-value=0.44 Score=42.76 Aligned_cols=114 Identities=16% Similarity=0.267 Sum_probs=74.0
Q ss_pred CCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeec-ccccceeEeeecC-CCCCEEEEeeCCCcEEEEecc----
Q 019847 58 DDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLE-GHHRRVATSSWNH-WNGHILTSGSKDKSIINHDVR---- 131 (335)
Q Consensus 58 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~~~d~~---- 131 (335)
-..+.-+.-+.-++..++-+....+.|||...+....+-. ...+.|.++.|.. .+++.+++.+....|.+|--.
T Consensus 29 i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 29 ISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 3445556666656555555555689999998887544322 3578899999953 277888888888999888542
Q ss_pred -cCC----eeeE-EeecCC-CCEEEEEeecCCCEEEEEeCCCeEEEEEc
Q 019847 132 -VSN----NVTS-CIKAHS-GEVCGLKWSNEGNLLASGGDDNVVRIWER 173 (335)
Q Consensus 132 -~~~----~~~~-~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 173 (335)
... .+.. .+..+. .+|.+..|.++|.+++.+ +..+.|+|-
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 111 1111 122333 678999999998765544 457888873
No 418
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.42 E-value=0.34 Score=38.24 Aligned_cols=180 Identities=12% Similarity=0.107 Sum_probs=107.4
Q ss_pred eeEeeecCCCCCEEEEeeCCC--cEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCccc
Q 019847 103 VATSSWNHWNGHILTSGSKDK--SIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSK 180 (335)
Q Consensus 103 v~~~~~~~~~~~~l~~~~~dg--~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 180 (335)
...+.|.. ++.++-+.+.-| .|+.+|+.+++..........----.++... ++.....-.++...+||.++. +
T Consensus 47 TQGL~~~~-~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~-d~l~qLTWk~~~~f~yd~~tl---~ 121 (264)
T PF05096_consen 47 TQGLEFLD-DGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG-DKLYQLTWKEGTGFVYDPNTL---K 121 (264)
T ss_dssp EEEEEEEE-TTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET-TEEEEEESSSSEEEEEETTTT---E
T ss_pred CccEEecC-CCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC-CEEEEEEecCCeEEEEccccc---e
Confidence 45566755 788888888777 7999999987754443322222233444443 345555567899999997764 3
Q ss_pred ceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecC------CcEeEEEeCCCCceeeeeeee
Q 019847 181 SLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAK------AQICGLEWNRHHKEILSGHGF 254 (335)
Q Consensus 181 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 254 (335)
.+.++. ..+.=..++ .+++.++.+.+ ...++++|..+.+....+... ..++.+.|- +|...+-.
T Consensus 122 ~~~~~~-y~~EGWGLt--~dg~~Li~SDG---S~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANV--- 191 (264)
T PF05096_consen 122 KIGTFP-YPGEGWGLT--SDGKRLIMSDG---SSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANV--- 191 (264)
T ss_dssp EEEEEE--SSS--EEE--ECSSCEEEE-S---SSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEE---
T ss_pred EEEEEe-cCCcceEEE--cCCCEEEEECC---ccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEe---
Confidence 444443 234556666 45667888764 678999999888877766532 235566665 44443332
Q ss_pred eeecCCCeEEEEECCCCceeeccc------------CC---CCceeEeEEcCCCCEEEEEe
Q 019847 255 SASGDGNKLCLWKYPNMTKVGELQ------------SS---NSRILDLSQSPDGLTVATAG 300 (335)
Q Consensus 255 ~~~~~~~~i~i~d~~~~~~~~~~~------------~~---~~~i~~~~~~~~~~~l~~~~ 300 (335)
-....|...|..+|+.+..+. .+ ..-.+.||+.|....|...|
T Consensus 192 ---W~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 192 ---WQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp ---TTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred ---CCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 346788888999888766441 01 24578999988765554444
No 419
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.32 E-value=0.11 Score=43.72 Aligned_cols=138 Identities=12% Similarity=0.068 Sum_probs=89.5
Q ss_pred eeecC-CceEEEecCCeEEEEEecCCc--eeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeE----e
Q 019847 22 IDWGR-NNVLAVALGPVLFLWKWENGK--VKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLV----R 94 (335)
Q Consensus 22 ~~~~~-~~~~~~~~~~~i~vw~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~----~ 94 (335)
+-|++ ++.+.+...|.+.=|-..... ....+.. ...++|.++.|++|.+.||+--.+.+|.+++....+.. .
T Consensus 28 vFfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm-~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~ 106 (657)
T KOG2377|consen 28 VFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDM-DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQ 106 (657)
T ss_pred eeeccCcceEEEEecCCeeEEEEeCCCCCCCceeee-cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHH
Confidence 33444 555555556666667655332 2222332 24569999999999999999999999999998543322 2
Q ss_pred eecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEe
Q 019847 95 NLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGG 163 (335)
Q Consensus 95 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 163 (335)
+.+.....|....|+. + .-++.-...| +-+|.........+..+.|...|.-..|.++.+.++.++
T Consensus 107 ~ck~k~~~IlGF~W~~-s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 107 ECKTKNANILGFCWTS-S-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred HhccCcceeEEEEEec-C-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence 2334456688999986 3 4555544443 556665545544566677888899999999877555444
No 420
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.32 E-value=0.92 Score=42.25 Aligned_cols=204 Identities=11% Similarity=0.080 Sum_probs=112.6
Q ss_pred CCCEEEEEECCCcEEEEeCCCceeEeeecccccc--------eeEeeecC---------------CCCCEEEEeeCCCcE
Q 019847 69 DAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRR--------VATSSWNH---------------WNGHILTSGSKDKSI 125 (335)
Q Consensus 69 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~--------v~~~~~~~---------------~~~~~l~~~~~dg~i 125 (335)
.+..|..++.++.|.-.|..+|+.+.++...... ...+.+.. ..+..++.++.|+.+
T Consensus 193 vgg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~L 272 (764)
T TIGR03074 193 VGDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARL 272 (764)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeE
Confidence 3567888888899999999999988877543211 12233321 133478888999999
Q ss_pred EEEecccCCeeeEEeecCCCCE-------------EEEEeec--CCCEEEEEeC----------CCeEEEEEccCCCccc
Q 019847 126 INHDVRVSNNVTSCIKAHSGEV-------------CGLKWSN--EGNLLASGGD----------DNVVRIWERSKMSSSK 180 (335)
Q Consensus 126 ~~~d~~~~~~~~~~~~~~~~~i-------------~~~~~~~--~~~~l~~~~~----------dg~i~iwd~~~~~~~~ 180 (335)
.-.|.++++.+... +..+.+ ..+.-.| .+..+++|+. +|.|+-+|.++++..-
T Consensus 273 iALDA~TGk~~W~f--g~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W 350 (764)
T TIGR03074 273 IALDADTGKLCEDF--GNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVW 350 (764)
T ss_pred EEEECCCCCEEEEe--cCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEee
Confidence 99999888765432 111111 1111122 2345666643 6889999988764321
Q ss_pred ceeeccC--------------CCCCe-eEEEecCCCCcEEEEec---------------CCCCCeEEEEECCCCceEEEe
Q 019847 181 SLHRFTD--------------HCGGV-KALAWSPHQVNVLATGG---------------GREDGCIKIWNVQKGTCIHGI 230 (335)
Q Consensus 181 ~~~~~~~--------------~~~~v-~~~~~~~~~~~~~~~~~---------------g~~d~~i~i~d~~~~~~~~~~ 230 (335)
....... ....+ ..++++|....++.-.+ ....+.|.-.|.++|+..-.+
T Consensus 351 ~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~ 430 (764)
T TIGR03074 351 AWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVF 430 (764)
T ss_pred EEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEe
Confidence 1111000 00011 23344444332222110 012456778899999988777
Q ss_pred ec-CCcEe---------EEEeCC-CCceeeeeeeeeeecCCCeEEEEECCCCceeecc
Q 019847 231 DA-KAQIC---------GLEWNR-HHKEILSGHGFSASGDGNKLCLWKYPNMTKVGEL 277 (335)
Q Consensus 231 ~~-~~~~~---------~~~~~~-~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~ 277 (335)
+. +..+. -+.+.. +|+..- .+..++.+|.+.++|.++++++...
T Consensus 431 Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~---~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 431 QTVHHDLWDMDVPAQPSLVDLPDADGTTVP---ALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred cccCCccccccccCCceEEeeecCCCcEee---EEEEECCCCEEEEEECCCCCEEeec
Confidence 54 22211 122222 442110 1233488999999999999887653
No 421
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.31 E-value=0.41 Score=38.12 Aligned_cols=144 Identities=15% Similarity=0.238 Sum_probs=86.5
Q ss_pred ceeEeeecCCCCCEEEEee---CCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEE-ccCCC
Q 019847 102 RVATSSWNHWNGHILTSGS---KDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWE-RSKMS 177 (335)
Q Consensus 102 ~v~~~~~~~~~~~~l~~~~---~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd-~~~~~ 177 (335)
.+.+.+.++ ++..++... ....+.++.. +....... ....+..-.|++++...+....+...+++. ...+.
T Consensus 25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~--~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL--TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEECC-CCCeEEEEEEcCCCCEEEEEcC--CCcceeec--cCCccccccccCCCCEEEEEcCCCceEEEEecCCCc
Confidence 688899999 777666554 3334555544 33323322 233778889999987777766666666663 22221
Q ss_pred cccceee-ccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECC---CC--ce----EEEe-ecCCcEeEEEeCCCCc
Q 019847 178 SSKSLHR-FTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQ---KG--TC----IHGI-DAKAQICGLEWNRHHK 246 (335)
Q Consensus 178 ~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~---~~--~~----~~~~-~~~~~~~~~~~~~~~~ 246 (335)
...... .......|..+.++|||.++++......++.|.+--+. .+ .. +... .....+..+.|.+++.
T Consensus 100 -~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~ 178 (253)
T PF10647_consen 100 -GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDST 178 (253)
T ss_pred -ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCE
Confidence 112211 11111289999999999998888632235777776543 22 11 1111 1235788999999998
Q ss_pred eeeee
Q 019847 247 EILSG 251 (335)
Q Consensus 247 ~~~~~ 251 (335)
.++.+
T Consensus 179 L~V~~ 183 (253)
T PF10647_consen 179 LVVLG 183 (253)
T ss_pred EEEEe
Confidence 87765
No 422
>PHA03098 kelch-like protein; Provisional
Probab=96.31 E-value=0.42 Score=42.88 Aligned_cols=133 Identities=14% Similarity=0.170 Sum_probs=66.5
Q ss_pred eEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECC------CcEEEEeCCCceeEee--ecccccceeEeee
Q 019847 37 VLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMD------SKLQLWDAETSKLVRN--LEGHHRRVATSSW 108 (335)
Q Consensus 37 ~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iw~~~~~~~~~~--~~~~~~~v~~~~~ 108 (335)
.+..||..+++......++...... +++ .-+++..+.|+.+ ..+..||..+.+.... +....... ++..
T Consensus 359 ~v~~yd~~~~~W~~~~~lp~~r~~~-~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~~~ 435 (534)
T PHA03098 359 TVESWKPGESKWREEPPLIFPRYNP-CVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-CAIY 435 (534)
T ss_pred eEEEEcCCCCceeeCCCcCcCCccc-eEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-eEEE
Confidence 5788888887765443333222111 222 2366677777632 4588899877654322 11111111 2222
Q ss_pred cCCCCCEEEEeeCCC--------cEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCC-----CeEEEEEccC
Q 019847 109 NHWNGHILTSGSKDK--------SIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDD-----NVVRIWERSK 175 (335)
Q Consensus 109 ~~~~~~~l~~~~~dg--------~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~ 175 (335)
. ++.+++.|+.++ .+..||..+..............-.+++ .-+++.++.|+.+ ..+.+||..+
T Consensus 436 -~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~v~~yd~~~ 512 (534)
T PHA03098 436 -H-DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLC-IFNNKIYVVGGDKYEYYINEIEVYDDKT 512 (534)
T ss_pred -E-CCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEE-EECCEEEEEcCCcCCcccceeEEEeCCC
Confidence 2 667777776532 3788888765432111001111111111 1256677777654 3677787664
No 423
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.30 E-value=0.15 Score=39.01 Aligned_cols=102 Identities=13% Similarity=0.206 Sum_probs=68.9
Q ss_pred ceeeeecCC--c-eEEEecCCeEEEEE--ecCCcee---eEEeecC----CCCCceEEEEcCCCCEEEEEECCCcEEEEe
Q 019847 19 SKVIDWGRN--N-VLAVALGPVLFLWK--WENGKVK---KLLQVPG----EDDYPTSVSWSHDAKTLAVGYMDSKLQLWD 86 (335)
Q Consensus 19 ~~~~~~~~~--~-~~~~~~~~~i~vw~--~~~~~~~---~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~ 86 (335)
.+.++|+.+ . ++.=+.+-+|.-|| ..+|... .++.+.. ..-..-.++...+|++.++.-..|+|.-.|
T Consensus 160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~d 239 (310)
T KOG4499|consen 160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVD 239 (310)
T ss_pred CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEEC
Confidence 456888864 2 33334566787787 5666542 2233321 112234556667888888888889999999
Q ss_pred CCCceeEeeecccccceeEeeecCCCCCEEEEee
Q 019847 87 AETSKLVRNLEGHHRRVATSSWNHWNGHILTSGS 120 (335)
Q Consensus 87 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 120 (335)
..+|+.+.+++-....+++++|--.+-+++++..
T Consensus 240 p~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~ 273 (310)
T KOG4499|consen 240 PTTGKILLEIKLPTPQITSCCFGGKNLDILYVTT 273 (310)
T ss_pred CCCCcEEEEEEcCCCceEEEEecCCCccEEEEEe
Confidence 9999999999988999999999653445555443
No 424
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.28 E-value=0.61 Score=39.80 Aligned_cols=90 Identities=16% Similarity=0.128 Sum_probs=57.3
Q ss_pred EEEEcCCCCEEEEEECCCcEEE---EeCC-Cc----eeEee----eccc-ccceeEeeecCC----------CCCEEEEe
Q 019847 63 SVSWSHDAKTLAVGYMDSKLQL---WDAE-TS----KLVRN----LEGH-HRRVATSSWNHW----------NGHILTSG 119 (335)
Q Consensus 63 ~~~~~~~~~~l~~~~~dg~i~i---w~~~-~~----~~~~~----~~~~-~~~v~~~~~~~~----------~~~~l~~~ 119 (335)
.++.+|+++.||.+..+..+.+ |+.. .+ ..... +... ...|+++.+.|- +...++.|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 5678899999999977765554 5331 11 11111 1111 157787777542 46789999
Q ss_pred eCCCcEEEEecccCCeeeEEeecCCCCEEEEEeec
Q 019847 120 SKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSN 154 (335)
Q Consensus 120 ~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~ 154 (335)
..+|.|++|... +.. +....-|..+|..+.+..
T Consensus 86 ~ssG~vrfyte~-G~L-L~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 86 TSSGYVRFYTEN-GVL-LLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred ecccEEEEEecc-chH-HHHHhcCccceEEEEecc
Confidence 999999999974 433 222334788888887743
No 425
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.28 E-value=0.59 Score=39.62 Aligned_cols=142 Identities=11% Similarity=0.100 Sum_probs=75.2
Q ss_pred CCceEEEEcCCCCEEEEEE-----------CCC-cEEEEeCCC--ce--eEeeecccccceeEeeecCCCCCEEEEeeCC
Q 019847 59 DYPTSVSWSHDAKTLAVGY-----------MDS-KLQLWDAET--SK--LVRNLEGHHRRVATSSWNHWNGHILTSGSKD 122 (335)
Q Consensus 59 ~~v~~~~~~~~~~~l~~~~-----------~dg-~i~iw~~~~--~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 122 (335)
.....|+|.++|+++++-. ..+ .|.+++-.+ |+ ....+...-.....+++.+ ++ +++ +...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV-~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYV-ATPP 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEE-eCCC
Confidence 4467899999998776642 223 677776432 22 2233433344567888887 66 444 4444
Q ss_pred CcEEEEecccC-----C--eeeEEeec----CCCCEEEEEeecCCCEEEEEeCC-------------------CeEEEEE
Q 019847 123 KSIINHDVRVS-----N--NVTSCIKA----HSGEVCGLKWSNEGNLLASGGDD-------------------NVVRIWE 172 (335)
Q Consensus 123 g~i~~~d~~~~-----~--~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~d-------------------g~i~iwd 172 (335)
...++.|.... + .+...+.. +......++|.|||.+.++-+.. |.|.-++
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 33334354321 1 11121211 13447789999999876654421 3344444
Q ss_pred ccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEe
Q 019847 173 RSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATG 208 (335)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 208 (335)
..... +..+...-.....++|+|++. ++++-
T Consensus 171 pdg~~----~e~~a~G~rnp~Gl~~d~~G~-l~~td 201 (367)
T TIGR02604 171 PDGGK----LRVVAHGFQNPYGHSVDSWGD-VFFCD 201 (367)
T ss_pred cCCCe----EEEEecCcCCCccceECCCCC-EEEEc
Confidence 33211 222222223356899999885 55543
No 426
>PHA02790 Kelch-like protein; Provisional
Probab=96.27 E-value=0.74 Score=40.65 Aligned_cols=173 Identities=13% Similarity=0.049 Sum_probs=83.6
Q ss_pred eEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECC--CcEEEEeCCCceeEe--eecccccceeEeeecCCC
Q 019847 37 VLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMD--SKLQLWDAETSKLVR--NLEGHHRRVATSSWNHWN 112 (335)
Q Consensus 37 ~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~iw~~~~~~~~~--~~~~~~~~v~~~~~~~~~ 112 (335)
.+..||..+++......++........+ .-++...+.|+.+ ..+..||..+++... .+.........+.. +
T Consensus 288 ~v~~Ydp~~~~W~~~~~m~~~r~~~~~v--~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~---~ 362 (480)
T PHA02790 288 NAIAVNYISNNWIPIPPMNSPRLYASGV--PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASI---N 362 (480)
T ss_pred eEEEEECCCCEEEECCCCCchhhcceEE--EECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEE---C
Confidence 5778888877665544443222222222 2367777777753 357888876654322 22211111222222 7
Q ss_pred CCEEEEeeCCC---cEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCC
Q 019847 113 GHILTSGSKDK---SIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHC 189 (335)
Q Consensus 113 ~~~l~~~~~dg---~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 189 (335)
+.+.+.|+.++ .+..||.++..............-.++ ..-++++.+.|+ .+.+||.++. .+..+..+....
T Consensus 363 g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~-~~~~~~IYv~GG---~~e~ydp~~~-~W~~~~~m~~~r 437 (480)
T PHA02790 363 NVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCA-LVFGRRLFLVGR---NAEFYCESSN-TWTLIDDPIYPR 437 (480)
T ss_pred CEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceE-EEECCEEEEECC---ceEEecCCCC-cEeEcCCCCCCc
Confidence 78888888654 467788765443211100111111112 223566666663 5678887643 333333332222
Q ss_pred CCeeEEEecCCCCcEEEEecCCCC-----CeEEEEECCCC
Q 019847 190 GGVKALAWSPHQVNVLATGGGRED-----GCIKIWNVQKG 224 (335)
Q Consensus 190 ~~v~~~~~~~~~~~~~~~~~g~~d-----~~i~i~d~~~~ 224 (335)
.... ++.. ++ .+++.|+ .+ ..+..||.+++
T Consensus 438 ~~~~-~~v~-~~-~IYviGG--~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 438 DNPE-LIIV-DN-KLLLIGG--FYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred cccE-EEEE-CC-EEEEECC--cCCCcccceEEEEECCCC
Confidence 2222 2222 23 5777764 22 34556665544
No 427
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=96.24 E-value=0.35 Score=36.67 Aligned_cols=107 Identities=18% Similarity=0.200 Sum_probs=66.6
Q ss_pred CEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCC------eEEEE---EccC-CCccc---
Q 019847 114 HILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDN------VVRIW---ERSK-MSSSK--- 180 (335)
Q Consensus 114 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg------~i~iw---d~~~-~~~~~--- 180 (335)
+.|+.+...+.|.+|++.............-+.|..+.++..|+++++--.+. .+|+| .... .....
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vR 108 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVR 108 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEE
Confidence 55555567788999999844443333334558899999999999999964332 55665 2110 00000
Q ss_pred ----------------ceeec-cCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCC
Q 019847 181 ----------------SLHRF-TDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKG 224 (335)
Q Consensus 181 ----------------~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~ 224 (335)
.+... .+-+.++.+++..|....+++.+ ++.+.+|.+...
T Consensus 109 iaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~----~~~l~lf~l~~~ 165 (215)
T PF14761_consen 109 IAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC----GNKLVLFTLKYQ 165 (215)
T ss_pred EcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc----CCEEEEEEEEEE
Confidence 01000 01244677888888777777764 789999987643
No 428
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.24 E-value=1 Score=41.97 Aligned_cols=113 Identities=18% Similarity=0.163 Sum_probs=70.7
Q ss_pred CCceEEEecCCeEEEEEecCCceeeEEeecCCCC------CceEEEEc----------------CCCCEEEEEECCCcEE
Q 019847 26 RNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDD------YPTSVSWS----------------HDAKTLAVGYMDSKLQ 83 (335)
Q Consensus 26 ~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~------~v~~~~~~----------------~~~~~l~~~~~dg~i~ 83 (335)
++.+++++.++.|.-.|..+|+.+-.+....... ....+++. ..+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 4677777888999999999998765554432111 11223332 1345788899999999
Q ss_pred EEeCCCceeEeeeccccccee-------------EeeecCC-CCCEEEEeeC----------CCcEEEEecccCCeeeEE
Q 019847 84 LWDAETSKLVRNLEGHHRRVA-------------TSSWNHW-NGHILTSGSK----------DKSIINHDVRVSNNVTSC 139 (335)
Q Consensus 84 iw~~~~~~~~~~~~~~~~~v~-------------~~~~~~~-~~~~l~~~~~----------dg~i~~~d~~~~~~~~~~ 139 (335)
-.|.++|+....+.. .+.+. .+.-.|. .+..++.|+. +|.|+-+|.++++..-+.
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999999877642 11110 0000110 2345666643 688999999988765443
No 429
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=96.21 E-value=0.54 Score=42.72 Aligned_cols=108 Identities=8% Similarity=0.104 Sum_probs=68.3
Q ss_pred CCCEEEEeeCCCcEEEEeccc-------C----Ce-e------eEEeecCCCCEEEEEee--cCCCEEEEEeCCCeEEEE
Q 019847 112 NGHILTSGSKDKSIINHDVRV-------S----NN-V------TSCIKAHSGEVCGLKWS--NEGNLLASGGDDNVVRIW 171 (335)
Q Consensus 112 ~~~~l~~~~~dg~i~~~d~~~-------~----~~-~------~~~~~~~~~~i~~~~~~--~~~~~l~~~~~dg~i~iw 171 (335)
+...|+.+..||.|.+|..+. . .. . ...........++++++ ...+++|+++....|.+|
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 567788888888888886521 0 00 0 00111234578999998 788899999988888888
Q ss_pred EccCCCcccceeeccCCCCCeeEEEecCCC--C---cEEEEecCCCCCeEEEEEC
Q 019847 172 ERSKMSSSKSLHRFTDHCGGVKALAWSPHQ--V---NVLATGGGREDGCIKIWNV 221 (335)
Q Consensus 172 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~---~~~~~~~g~~d~~i~i~d~ 221 (335)
-............-..+...|.+++|-++. . ..+++++ -.|.+.+|++
T Consensus 193 af~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~d--I~G~v~~~~I 245 (717)
T PF08728_consen 193 AFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATD--ISGEVWTFKI 245 (717)
T ss_pred EEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEe--ccCcEEEEEE
Confidence 655422211111112255668899997764 1 2455554 8999999887
No 430
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.18 E-value=0.59 Score=39.63 Aligned_cols=147 Identities=13% Similarity=0.160 Sum_probs=77.5
Q ss_pred cceeEeeecCCCCCEEEEee-----------CCC-cEEEEecccC-Ce--eeEEeecCCCCEEEEEeecCCCEEEEEeCC
Q 019847 101 RRVATSSWNHWNGHILTSGS-----------KDK-SIINHDVRVS-NN--VTSCIKAHSGEVCGLKWSNEGNLLASGGDD 165 (335)
Q Consensus 101 ~~v~~~~~~~~~~~~l~~~~-----------~dg-~i~~~d~~~~-~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 165 (335)
.....++|.+ +++++++-. ..+ .|.+++-..+ .. ....+.........+++.+++ +++ +...
T Consensus 14 ~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPP 90 (367)
T ss_pred CCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCC
Confidence 4556778877 777766642 223 6666654322 11 123333334456889999888 444 4444
Q ss_pred CeEEEE-EccCCC----cccce-eeccC----CCCCeeEEEecCCCCcEEEEecCC----------------CCCeEEEE
Q 019847 166 NVVRIW-ERSKMS----SSKSL-HRFTD----HCGGVKALAWSPHQVNVLATGGGR----------------EDGCIKIW 219 (335)
Q Consensus 166 g~i~iw-d~~~~~----~~~~~-~~~~~----~~~~v~~~~~~~~~~~~~~~~~g~----------------~d~~i~i~ 219 (335)
.|..+ |..... ..+.+ ..+.. +......+.|.|+|..+++.++.. ..+.|.-+
T Consensus 91 -~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~ 169 (367)
T TIGR02604 91 -DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRY 169 (367)
T ss_pred -eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEE
Confidence 44434 543211 11112 22222 134477899999996555444200 01445666
Q ss_pred ECCCCceEEEeecCCcEeEEEeCCCCceeeee
Q 019847 220 NVQKGTCIHGIDAKAQICGLEWNRHHKEILSG 251 (335)
Q Consensus 220 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (335)
|...++....-........++|+++|..+++-
T Consensus 170 ~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~td 201 (367)
T TIGR02604 170 NPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCD 201 (367)
T ss_pred ecCCCeEEEEecCcCCCccceECCCCCEEEEc
Confidence 65544432222233456789999999887653
No 431
>PHA02790 Kelch-like protein; Provisional
Probab=96.09 E-value=0.78 Score=40.51 Aligned_cols=183 Identities=10% Similarity=0.021 Sum_probs=83.9
Q ss_pred CCCEEEEeeCCC-----cEEEEecccCCeeeE-EeecCCCCEEEEEeecCCCEEEEEeCC--CeEEEEEccCCCccccee
Q 019847 112 NGHILTSGSKDK-----SIINHDVRVSNNVTS-CIKAHSGEVCGLKWSNEGNLLASGGDD--NVVRIWERSKMSSSKSLH 183 (335)
Q Consensus 112 ~~~~l~~~~~dg-----~i~~~d~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~ 183 (335)
++.+++.|+.++ .+..||..+...... .+....... +++ .-++...+.|+.+ ..+..||.... ....+.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v-~~~~~iYviGG~~~~~sve~ydp~~n-~W~~~~ 347 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGV-PANNKLYVVGGLPNPTSVERWFHGDA-AWVNMP 347 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEE-EECCEEEEECCcCCCCceEEEECCCC-eEEECC
Confidence 566777777543 466788765432111 111111111 122 2367777887754 35777886532 122222
Q ss_pred eccCCCCCeeEEEecCCCCcEEEEecCCCC---CeEEEEECCCCceEEEeecCCcEe-EEEeCCCCceeeeeeeeeeecC
Q 019847 184 RFTDHCGGVKALAWSPHQVNVLATGGGRED---GCIKIWNVQKGTCIHGIDAKAQIC-GLEWNRHHKEILSGHGFSASGD 259 (335)
Q Consensus 184 ~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d---~~i~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 259 (335)
.+.........+.. ++ .+.+.|+ .+ ..+..||.++.+-...-....+.. .....-+++..+.|
T Consensus 348 ~l~~~r~~~~~~~~--~g-~IYviGG--~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G-------- 414 (480)
T PHA02790 348 SLLKPRCNPAVASI--NN-VIYVIGG--HSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG-------- 414 (480)
T ss_pred CCCCCCcccEEEEE--CC-EEEEecC--cCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC--------
Confidence 22211111112222 33 5777774 33 356788877654432211111111 11112234444433
Q ss_pred CCeEEEEECCCCce--eecccCCCCceeEeEEcCCCCEEEEEeCC-----CcEEEEecCCC
Q 019847 260 GNKLCLWKYPNMTK--VGELQSSNSRILDLSQSPDGLTVATAGAD-----ETIRFWEAFGP 313 (335)
Q Consensus 260 ~~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~v~iw~~~~~ 313 (335)
|.+.+||..+.+- +..+.........+ .-++++.+.||.+ ..+..||....
T Consensus 415 -G~~e~ydp~~~~W~~~~~m~~~r~~~~~~--v~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 415 -RNAEFYCESSNTWTLIDDPIYPRDNPELI--IVDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred -CceEEecCCCCcEeEcCCCCCCccccEEE--EECCEEEEECCcCCCcccceEEEEECCCC
Confidence 4567788765433 22222212222222 2366777788754 34666766654
No 432
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.09 E-value=0.57 Score=37.61 Aligned_cols=208 Identities=12% Similarity=0.083 Sum_probs=117.4
Q ss_pred cceeEeeecCCCCCEEEEeeCCCcEEEEecc------cCCeeeEEeec-----CCCCEEEEEeecCCC------------
Q 019847 101 RRVATSSWNHWNGHILTSGSKDKSIINHDVR------VSNNVTSCIKA-----HSGEVCGLKWSNEGN------------ 157 (335)
Q Consensus 101 ~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~------~~~~~~~~~~~-----~~~~i~~~~~~~~~~------------ 157 (335)
..-+.++++| .+.+-++....+...+||.. ....+...+.. .....+.+.|+....
T Consensus 23 ~N~WGia~~p-~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a 101 (336)
T TIGR03118 23 RNAWGLSYRP-GGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS 101 (336)
T ss_pred cccceeEecC-CCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence 3567899999 78888888888999999986 12222322221 234567777764322
Q ss_pred EEEEEeCCCeEEEEEccCCCcc--cceeecc-CCCCCe-eEEEec--CCCCcEEEEecCCCCCeEEEEECCCCceEEE--
Q 019847 158 LLASGGDDNVVRIWERSKMSSS--KSLHRFT-DHCGGV-KALAWS--PHQVNVLATGGGREDGCIKIWNVQKGTCIHG-- 229 (335)
Q Consensus 158 ~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~-~~~~~v-~~~~~~--~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~-- 229 (335)
.++.+++||+|.-|...-.... .....+. ...+.| ..+++. ..+.+|.++-- ..++|.+||-.-.+....
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF--~~g~IDVFd~~f~~~~~~g~ 179 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANF--RQGRIDVFKGSFRPPPLPGS 179 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEecc--CCCceEEecCccccccCCCC
Confidence 3678899999999985322210 1111121 112333 345554 33566777655 789999998543322110
Q ss_pred eecC-----C------------cEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeeccc--CCCCceeEeEEc
Q 019847 230 IDAK-----A------------QICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQ--SSNSRILDLSQS 290 (335)
Q Consensus 230 ~~~~-----~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~ 290 (335)
+..+ . -|+-..-.++.+.-+. +..-|.|-+||. .++.++++. +.-.....|+..
T Consensus 180 F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~------G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~A 252 (336)
T TIGR03118 180 FIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVA------GAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIA 252 (336)
T ss_pred ccCCCCCCCCCCcceEEECCeEEEEEEecCCccccccc------CCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeC
Confidence 1000 0 0111111222221121 233578999996 566666653 223345667765
Q ss_pred C------CCCEEEEEeCCCcEEEEecCCCCCCCC
Q 019847 291 P------DGLTVATAGADETIRFWEAFGPSGDED 318 (335)
Q Consensus 291 ~------~~~~l~~~~~dg~v~iw~~~~~~~~~~ 318 (335)
| .+.+|+-=-.||+|..||..+++....
T Consensus 253 Pa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~ 286 (336)
T TIGR03118 253 PESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQ 286 (336)
T ss_pred hhhhCCCCCCeEEeecCCceeEEecCCCCceeee
Confidence 5 356666555799999999887664433
No 433
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=96.09 E-value=0.039 Score=29.66 Aligned_cols=32 Identities=16% Similarity=0.165 Sum_probs=27.6
Q ss_pred cceeEeeecCCCC--CEEEEeeCCCcEEEEeccc
Q 019847 101 RRVATSSWNHWNG--HILTSGSKDKSIINHDVRV 132 (335)
Q Consensus 101 ~~v~~~~~~~~~~--~~l~~~~~dg~i~~~d~~~ 132 (335)
+.+.++.|+|..+ ++|+.+-..|.+.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4688999998556 7999999999999999985
No 434
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.96 E-value=0.79 Score=44.08 Aligned_cols=33 Identities=12% Similarity=0.348 Sum_probs=27.3
Q ss_pred CCceEEEEcCCCCEEEEEECCCcEEEEeCCCce
Q 019847 59 DYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSK 91 (335)
Q Consensus 59 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 91 (335)
.....++|+|....+|.++.+|.|++|-...-+
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve 68 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPGVE 68 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEecccceE
Confidence 345678999999999999999999999755433
No 435
>PRK13684 Ycf48-like protein; Provisional
Probab=95.92 E-value=0.83 Score=38.13 Aligned_cols=150 Identities=10% Similarity=0.048 Sum_probs=85.6
Q ss_pred CCCEEEEEeecCCCEEEEEeCCCeEEEE-EccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECC
Q 019847 144 SGEVCGLKWSNEGNLLASGGDDNVVRIW-ERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQ 222 (335)
Q Consensus 144 ~~~i~~~~~~~~~~~l~~~~~dg~i~iw-d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~ 222 (335)
...+..+.+.|++.+++++. .|.+..- | ........+. ......++.+.+.+++. +++.+ ..|.+++=...
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~--~~~~~~l~~i~~~~~g~-~~~vg---~~G~~~~~s~d 243 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWE-PGQTAWTPHQ--RNSSRRLQSMGFQPDGN-LWMLA---RGGQIRFNDPD 243 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcC-CCCCeEEEee--CCCcccceeeeEcCCCC-EEEEe---cCCEEEEccCC
Confidence 55788999999887766654 5655432 2 1111222222 23346788999999885 45555 46766543334
Q ss_pred CCceEEEeec-----CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeeccc---CCCCceeEeEEcCCCC
Q 019847 223 KGTCIHGIDA-----KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQ---SSNSRILDLSQSPDGL 294 (335)
Q Consensus 223 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~---~~~~~i~~~~~~~~~~ 294 (335)
.+..-..... ...+..+.+.+++..++++ .+|.+. .....++.-.... .-....+.+.|..+++
T Consensus 244 ~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-------~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~ 315 (334)
T PRK13684 244 DLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-------GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEK 315 (334)
T ss_pred CCCccccccCCccccccceeeEEEcCCCCEEEEc-------CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCc
Confidence 4433222221 2347788899988777665 355554 3444444333322 2223577788877776
Q ss_pred EEEEEeCCCcEEEEec
Q 019847 295 TVATAGADETIRFWEA 310 (335)
Q Consensus 295 ~l~~~~~dg~v~iw~~ 310 (335)
.++ .+..|.|.-|+-
T Consensus 316 ~~~-~G~~G~il~~~~ 330 (334)
T PRK13684 316 GFV-LGQRGVLLRYVG 330 (334)
T ss_pred eEE-ECCCceEEEecC
Confidence 655 556788877754
No 436
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.83 E-value=0.64 Score=42.86 Aligned_cols=35 Identities=17% Similarity=0.276 Sum_probs=23.6
Q ss_pred CCceeEeEEcCC---CCEEEEEeCCCcEEEEecCCCCC
Q 019847 281 NSRILDLSQSPD---GLTVATAGADETIRFWEAFGPSG 315 (335)
Q Consensus 281 ~~~i~~~~~~~~---~~~l~~~~~dg~v~iw~~~~~~~ 315 (335)
...|..+.|+|. +..|+.-..|+.+|+||+.....
T Consensus 146 ~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~~ 183 (717)
T PF10168_consen 146 SLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQH 183 (717)
T ss_pred CceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCCC
Confidence 345677777775 46777777777777777765443
No 437
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=95.74 E-value=0.082 Score=28.36 Aligned_cols=41 Identities=12% Similarity=0.208 Sum_probs=31.4
Q ss_pred CCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEe
Q 019847 199 PHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEW 241 (335)
Q Consensus 199 ~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 241 (335)
|++++++++.. .++.|.++|..+++.+..+........+.+
T Consensus 1 pd~~~lyv~~~--~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNS--GSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeC--CCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 57777888775 689999999999998888876555555544
No 438
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.66 E-value=0.075 Score=28.57 Aligned_cols=31 Identities=32% Similarity=0.334 Sum_probs=26.0
Q ss_pred CCEEEEEeecCC---CEEEEEeCCCeEEEEEccC
Q 019847 145 GEVCGLKWSNEG---NLLASGGDDNVVRIWERSK 175 (335)
Q Consensus 145 ~~i~~~~~~~~~---~~l~~~~~dg~i~iwd~~~ 175 (335)
+++.++.|+|++ .+|+.+-.-|.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468999999843 5888888889999999984
No 439
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=95.64 E-value=1 Score=37.02 Aligned_cols=231 Identities=11% Similarity=0.008 Sum_probs=112.7
Q ss_pred eEEEecCCeEEEEEecC--CceeeEEeecCCCCCceEEEEcCCCCEEEEEE-CCCcEEEEeCCCcee-------------
Q 019847 29 VLAVALGPVLFLWKWEN--GKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGY-MDSKLQLWDAETSKL------------- 92 (335)
Q Consensus 29 ~~~~~~~~~i~vw~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~------------- 92 (335)
.+..|.+..+++.+++. ++..+.+ +...|+++...+.-+.|++-+ ....++.+++..-..
T Consensus 15 ~lL~GTe~Gly~~~~~~~~~~~~kl~----~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~ 90 (302)
T smart00036 15 WLLVGTEEGLYVLNISDQPGTLEKLI----GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIR 90 (302)
T ss_pred EEEEEeCCceEEEEcccCCCCeEEec----CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCcccccc
Confidence 44445555566666654 3333332 466899999999877766654 334499999842221
Q ss_pred ---EeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEee-------cCCCCEEEEEeecC--CCEEE
Q 019847 93 ---VRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIK-------AHSGEVCGLKWSNE--GNLLA 160 (335)
Q Consensus 93 ---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~-------~~~~~i~~~~~~~~--~~~l~ 160 (335)
...+ .+................++++....+|.++............. ....++..+..+++ ...+.
T Consensus 91 ~~~~~~~-~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lc 169 (302)
T smart00036 91 KNVLTKI-PDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGIC 169 (302)
T ss_pred ccceEeC-CcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEE
Confidence 1111 23332223333321233445555666777765432211111111 11223333333432 45777
Q ss_pred EEeCCCeEEEEEccC--CCcccc-ee-eccCCC-CCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceE--EEeecC
Q 019847 161 SGGDDNVVRIWERSK--MSSSKS-LH-RFTDHC-GGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCI--HGIDAK 233 (335)
Q Consensus 161 ~~~~dg~i~iwd~~~--~~~~~~-~~-~~~~~~-~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~--~~~~~~ 233 (335)
.|+..+...++++.. ...... +. ...... .++.... -+++..+++ .|....+.|....+.. ..+.-.
T Consensus 170 vG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~-l~~~e~Llc-----~~~~~v~Vn~~G~~~~r~~~l~w~ 243 (302)
T smart00036 170 IGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQ-VPRDEFLLC-----YDEFGVFVNLYGKRRSRNPILHWE 243 (302)
T ss_pred EEEcCCCCeEEEEeecccccccccccccccccccCceEEEE-ECCCeEEEE-----ECcEEEEEeCCCCccccceEEEcC
Confidence 777642344444432 110000 00 001111 3333333 444443333 4666777776531221 233334
Q ss_pred CcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccC
Q 019847 234 AQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQS 279 (335)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~ 279 (335)
..+.++++.. .+++.- .++.|.++++.+++.++++..
T Consensus 244 ~~p~~~~~~~--pyll~~-------~~~~ievr~l~~~~l~q~i~~ 280 (302)
T smart00036 244 FMPESFAYHS--PYLLAF-------HDNGIEIRSIKTGELLQELAD 280 (302)
T ss_pred CcccEEEEEC--CEEEEE-------cCCcEEEEECCCCceEEEEec
Confidence 4555666653 344332 367799999999998887764
No 440
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.62 E-value=0.0016 Score=54.50 Aligned_cols=142 Identities=14% Similarity=0.315 Sum_probs=99.2
Q ss_pred CEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCc
Q 019847 146 EVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGT 225 (335)
Q Consensus 146 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~ 225 (335)
......|-|++.-++.++.+..+..||-.. +.+.. ...++....++|..+++.+++.+- ..+.+.+||+.+..
T Consensus 36 ~pi~~~w~~e~~nlavaca~tiv~~YD~ag----q~~le-~n~tg~aldm~wDkegdvlavlAe--k~~piylwd~n~ey 108 (615)
T KOG2247|consen 36 GPIIHRWRPEGHNLAVACANTIVIYYDKAG----QVILE-LNPTGKALDMAWDKEGDVLAVLAE--KTGPIYLWDVNSEY 108 (615)
T ss_pred ccceeeEecCCCceehhhhhhHHHhhhhhc----ceecc-cCCchhHhhhhhccccchhhhhhh--cCCCeeechhhhhh
Confidence 334567788776688888888899998432 11221 223455678899998888777765 78999999987532
Q ss_pred eEEEee--cCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCC
Q 019847 226 CIHGID--AKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGAD 302 (335)
Q Consensus 226 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 302 (335)
. ..++ ....-.-+.|++.+..++.+ ...+.+.|++..+.+.+...-.|..+++++++.+.+. .+.++.|
T Consensus 109 t-qqLE~gg~~s~sll~wsKg~~el~ig------~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~-vil~dcd 179 (615)
T KOG2247|consen 109 T-QQLESGGTSSKSLLAWSKGTPELVIG------NNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY-VILCDCD 179 (615)
T ss_pred H-HHHhccCcchHHHHhhccCCcccccc------ccccceEEEeccchhhhhhhcccccceeEEEecccce-eeecCcH
Confidence 2 1222 12222337889988888887 4589999999988887777666889999999999875 4444444
No 441
>PRK13684 Ycf48-like protein; Provisional
Probab=95.61 E-value=1.1 Score=37.36 Aligned_cols=152 Identities=13% Similarity=0.138 Sum_probs=85.2
Q ss_pred ccceeEeeecCCCCCEEEEeeCCCcEEEE-ecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCc
Q 019847 100 HRRVATSSWNHWNGHILTSGSKDKSIINH-DVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSS 178 (335)
Q Consensus 100 ~~~v~~~~~~~~~~~~l~~~~~dg~i~~~-d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 178 (335)
...+..+.+.| ++.++++ +..|.+..- +-. +..-..........++++.+.++++.++++ ..|.+++=..+.+..
T Consensus 172 ~g~~~~i~~~~-~g~~v~~-g~~G~i~~s~~~g-g~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~s 247 (334)
T PRK13684 172 AGVVRNLRRSP-DGKYVAV-SSRGNFYSTWEPG-QTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLES 247 (334)
T ss_pred cceEEEEEECC-CCeEEEE-eCCceEEEEcCCC-CCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCc
Confidence 45688888888 6655544 445655432 211 122222223345678999999998877765 467665422333333
Q ss_pred ccceeec-cCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEee----cCCcEeEEEeCCCCceeeeeee
Q 019847 179 SKSLHRF-TDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGID----AKAQICGLEWNRHHKEILSGHG 253 (335)
Q Consensus 179 ~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 253 (335)
.+..... ......+..+.+.|++. +++++ .+|.+.. ....++.-...+ .......+.+..+++.+++|
T Consensus 248 W~~~~~~~~~~~~~l~~v~~~~~~~-~~~~G---~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G-- 320 (334)
T PRK13684 248 WSKPIIPEITNGYGYLDLAYRTPGE-IWAGG---GNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLG-- 320 (334)
T ss_pred cccccCCccccccceeeEEEcCCCC-EEEEc---CCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEEC--
Confidence 3322211 11223477889998764 66655 4676553 444444333332 12357777777777777765
Q ss_pred eeeecCCCeEEEEE
Q 019847 254 FSASGDGNKLCLWK 267 (335)
Q Consensus 254 ~~~~~~~~~i~i~d 267 (335)
..|.|..++
T Consensus 321 -----~~G~il~~~ 329 (334)
T PRK13684 321 -----QRGVLLRYV 329 (334)
T ss_pred -----CCceEEEec
Confidence 467776665
No 442
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.60 E-value=1 Score=36.76 Aligned_cols=269 Identities=14% Similarity=0.134 Sum_probs=121.4
Q ss_pred ccccceeeeecC-CceEEEecCCeEEEEEe-cCCceeeEEeecCC---CCCceEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 019847 15 EDYYSKVIDWGR-NNVLAVALGPVLFLWKW-ENGKVKKLLQVPGE---DDYPTSVSWSHDAKTLAVGYMDSKLQLWDAET 89 (335)
Q Consensus 15 ~~~~~~~~~~~~-~~~~~~~~~~~i~vw~~-~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 89 (335)
.+..+..+.|.+ +.-++++..+.| +.. +.|+.=........ .-...++.|..+ +.+++| ..| +.+...+.
T Consensus 15 t~~~l~dV~F~d~~~G~~VG~~g~i--l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~ivG-~~g-~ll~T~Dg 89 (302)
T PF14870_consen 15 TDKPLLDVAFVDPNHGWAVGAYGTI--LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWIVG-EPG-LLLHTTDG 89 (302)
T ss_dssp -SS-EEEEEESSSS-EEEEETTTEE--EEESSTTSS-EE-----S-----EEEEEEEETT-EEEEEE-ETT-EEEEESST
T ss_pred CCCceEEEEEecCCEEEEEecCCEE--EEECCCCccccccccCCCccceeeEEEEEecCC-ceEEEc-CCc-eEEEecCC
Confidence 444667788876 455666666654 333 33332122111111 123567777543 344444 444 44444444
Q ss_pred ceeEeeec---ccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCee-eEEeecCCCCEEEEEeecCCCEEEEEeCC
Q 019847 90 SKLVRNLE---GHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNV-TSCIKAHSGEVCGLKWSNEGNLLASGGDD 165 (335)
Q Consensus 90 ~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 165 (335)
|+.=..+. .-......+.... ++..++ .+..|.| |....+..- ......-.+.+..+.-+++|++++++...
T Consensus 90 G~tW~~v~l~~~lpgs~~~i~~l~-~~~~~l-~~~~G~i--y~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G 165 (302)
T PF14870_consen 90 GKTWERVPLSSKLPGSPFGITALG-DGSAEL-AGDRGAI--YRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRG 165 (302)
T ss_dssp TSS-EE----TT-SS-EEEEEEEE-TTEEEE-EETT--E--EEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTS
T ss_pred CCCcEEeecCCCCCCCeeEEEEcC-CCcEEE-EcCCCcE--EEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcc
Confidence 43322221 1122333344333 333333 3444543 333333321 22234455778889889999999988766
Q ss_pred CeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEEC-CCCceEEE--ee---cCCcEeEE
Q 019847 166 NVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNV-QKGTCIHG--ID---AKAQICGL 239 (335)
Q Consensus 166 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~-~~~~~~~~--~~---~~~~~~~~ 239 (335)
....-||--. ....+.. ......|..+.|.|++. +...+ ..|.|++=+. ...+.-.. .+ ....+..+
T Consensus 166 ~~~~s~~~G~-~~w~~~~--r~~~~riq~~gf~~~~~-lw~~~---~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~ 238 (302)
T PF14870_consen 166 NFYSSWDPGQ-TTWQPHN--RNSSRRIQSMGFSPDGN-LWMLA---RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDL 238 (302)
T ss_dssp SEEEEE-TT--SS-EEEE----SSS-EEEEEE-TTS--EEEEE---TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEE
T ss_pred cEEEEecCCC-ccceEEc--cCccceehhceecCCCC-EEEEe---CCcEEEEccCCCCccccccccCCcccCceeeEEE
Confidence 6666777332 1122222 22457799999999975 44444 5788888772 22222111 11 12348899
Q ss_pred EeCCCCceeeeeeeeeeecCCCeEEEEECCCCceee---cccCCCCceeEeEEcCCCCEEEEEeCCCcEEEE
Q 019847 240 EWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVG---ELQSSNSRILDLSQSPDGLTVATAGADETIRFW 308 (335)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~---~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw 308 (335)
+|.+++...++|. .|. .+...+.++.-. ....-...++.+.|.++.+-++ -+.+|.+.-|
T Consensus 239 a~~~~~~~wa~gg-------~G~-l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~-lG~~G~ll~~ 301 (302)
T PF14870_consen 239 AYRPPNEIWAVGG-------SGT-LLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFV-LGQDGVLLRY 301 (302)
T ss_dssp EESSSS-EEEEES-------TT--EEEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEE-E-STTEEEEE
T ss_pred EecCCCCEEEEeC-------Ccc-EEEeCCCCccceECccccCCCCceEEEEEcCCCceEE-ECCCcEEEEe
Confidence 9999988887762 333 333444444322 2233345678888876655444 5578887655
No 443
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.58 E-value=0.5 Score=40.01 Aligned_cols=127 Identities=12% Similarity=0.099 Sum_probs=80.9
Q ss_pred EeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEe----ecC-CcE
Q 019847 162 GGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGI----DAK-AQI 236 (335)
Q Consensus 162 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~----~~~-~~~ 236 (335)
+...|.+.=|-...+....++..-....++|.++.|++|++ +++.-. .+..|.+++....+..... +.+ ..|
T Consensus 39 avrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnk-ilAVQR--~~~~v~f~nf~~d~~~l~~~~~ck~k~~~I 115 (657)
T KOG2377|consen 39 AVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNK-ILAVQR--TSKTVDFCNFIPDNSQLEYTQECKTKNANI 115 (657)
T ss_pred EEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcc-eEEEEe--cCceEEEEecCCCchhhHHHHHhccCccee
Confidence 33455566676665544444444445678999999999996 555544 7999999998544332222 222 348
Q ss_pred eEEEeCCCCceeeeeeeeeeecCCCeEEEEECCC-CceeecccCCCCceeEeEEcCCCCEEEEE
Q 019847 237 CGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPN-MTKVGELQSSNSRILDLSQSPDGLTVATA 299 (335)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 299 (335)
....|+......+.. +..+.+|.... .+.++..+.|...|.-..|.++-+.++-+
T Consensus 116 lGF~W~~s~e~A~i~--------~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~ 171 (657)
T KOG2377|consen 116 LGFCWTSSTEIAFIT--------DQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLS 171 (657)
T ss_pred EEEEEecCeeEEEEe--------cCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeee
Confidence 888998874444333 55667776543 34455566777788888888887654443
No 444
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=95.47 E-value=1.4 Score=37.69 Aligned_cols=145 Identities=10% Similarity=0.167 Sum_probs=83.2
Q ss_pred CCCEEEEEECCCcEEEEeCCCce-----eEeeecccccceeEeeec---CCCCCEEEEeeCCCcEEEEecccCC------
Q 019847 69 DAKTLAVGYMDSKLQLWDAETSK-----LVRNLEGHHRRVATSSWN---HWNGHILTSGSKDKSIINHDVRVSN------ 134 (335)
Q Consensus 69 ~~~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~~~~~v~~~~~~---~~~~~~l~~~~~dg~i~~~d~~~~~------ 134 (335)
+...+++|+..|.++||+....+ .+-+. .-..+|..+..- +......++.-.-..+.+|.+....
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~-~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g 114 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLET-QLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHG 114 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEE-ecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccC
Confidence 34689999999999999985433 12222 234677776643 3234344444667788888874221
Q ss_pred --eeeEEeecCC--CCEEEEEeec----C-CCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEE
Q 019847 135 --NVTSCIKAHS--GEVCGLKWSN----E-GNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVL 205 (335)
Q Consensus 135 --~~~~~~~~~~--~~i~~~~~~~----~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 205 (335)
........|. .....+++-| . ..++++-+.||.+.+|+-+... ...+.+..--...+++.+..+.++
T Consensus 115 ~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~----f~~~lp~~llPgPl~Y~~~tDsfv 190 (418)
T PF14727_consen 115 NQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFA----FSRFLPDFLLPGPLCYCPRTDSFV 190 (418)
T ss_pred cEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEE----EEEEcCCCCCCcCeEEeecCCEEE
Confidence 1122223333 2334444434 2 3688889999999999954321 111111122223466777766666
Q ss_pred EEecCCCCCeEEEEEC
Q 019847 206 ATGGGREDGCIKIWNV 221 (335)
Q Consensus 206 ~~~~g~~d~~i~i~d~ 221 (335)
++. .+..+..|..
T Consensus 191 t~s---ss~~l~~Yky 203 (418)
T PF14727_consen 191 TAS---SSWTLECYKY 203 (418)
T ss_pred Eec---CceeEEEecH
Confidence 655 4677887764
No 445
>PRK10115 protease 2; Provisional
Probab=95.46 E-value=2.2 Score=39.65 Aligned_cols=241 Identities=10% Similarity=0.035 Sum_probs=119.5
Q ss_pred ccceeeeecCC-ceEEEecC--C----eEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECC------CcEE
Q 019847 17 YYSKVIDWGRN-NVLAVALG--P----VLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMD------SKLQ 83 (335)
Q Consensus 17 ~~~~~~~~~~~-~~~~~~~~--~----~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~ 83 (335)
+.+..+.|+++ ++++.+.| | .+++.|+.+++.... .+.+ . -..++|.+|++.|+....+ ..|.
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~-~i~~-~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~ 202 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE-LLDN-V--EPSFVWANDSWTFYYVRKHPVTLLPYQVW 202 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc-cccC-c--ceEEEEeeCCCEEEEEEecCCCCCCCEEE
Confidence 55666788874 56665543 2 688999988863221 1111 1 1569999999877766542 3678
Q ss_pred EEeCCCc--eeEeeecccccceeEeeecCCCCCEEEEeeC---CCcEEEEecccC-CeeeEEeecCCCCEEEEEeecCCC
Q 019847 84 LWDAETS--KLVRNLEGHHRRVATSSWNHWNGHILTSGSK---DKSIINHDVRVS-NNVTSCIKAHSGEVCGLKWSNEGN 157 (335)
Q Consensus 84 iw~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~~~d~~~~-~~~~~~~~~~~~~i~~~~~~~~~~ 157 (335)
.+++.++ +....+........-..+.+.++..++..+. ++.+.+++.... ......+.........+. +..+.
T Consensus 203 ~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 281 (686)
T PRK10115 203 RHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHR 281 (686)
T ss_pred EEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCE
Confidence 8888877 3333344333333322233336665554433 357888885321 111222222222222222 32333
Q ss_pred EEEEEeCC---CeEEEEEccCCCcccceeeccCC-C-CCeeEEEecCCCCcEEEEecCCCCCeEEEE--ECCCCceEEEe
Q 019847 158 LLASGGDD---NVVRIWERSKMSSSKSLHRFTDH-C-GGVKALAWSPHQVNVLATGGGREDGCIKIW--NVQKGTCIHGI 230 (335)
Q Consensus 158 ~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~-~-~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~--d~~~~~~~~~~ 230 (335)
+++....+ ..|...++.... ....+..+ . ..+..+.+. ++.++++.. .++.-+++ +...+ .+..+
T Consensus 282 ly~~tn~~~~~~~l~~~~~~~~~---~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~--~~g~~~l~~~~~~~~-~~~~l 353 (686)
T PRK10115 282 FYLRSNRHGKNFGLYRTRVRDEQ---QWEELIPPRENIMLEGFTLF--TDWLVVEER--QRGLTSLRQINRKTR-EVIGI 353 (686)
T ss_pred EEEEEcCCCCCceEEEecCCCcc---cCeEEECCCCCCEEEEEEEE--CCEEEEEEE--eCCEEEEEEEcCCCC-ceEEe
Confidence 33333222 234444443211 12233334 2 357777777 336777665 56655554 54333 33444
Q ss_pred ec--CCcEeEEEeC--CCCceeeeeeeeeeecCCCeEEEEECCCCc
Q 019847 231 DA--KAQICGLEWN--RHHKEILSGHGFSASGDGNKLCLWKYPNMT 272 (335)
Q Consensus 231 ~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~ 272 (335)
.. ...+..+..+ +++..+... +.+-..-+.+..+|..+++
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~--~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 354 AFDDPAYVTWIAYNPEPETSRLRYG--YSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred cCCCCceEeeecccCCCCCceEEEE--EecCCCCCEEEEEECCCCc
Confidence 32 2223333344 444434332 2223456888889987764
No 446
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.40 E-value=0.0016 Score=54.51 Aligned_cols=239 Identities=14% Similarity=0.159 Sum_probs=133.2
Q ss_pred CceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEE
Q 019847 60 YPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSC 139 (335)
Q Consensus 60 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~ 139 (335)
......|-|.+.-++.++.+..+..||-. ++...... .++....++|....+..++.+-..+.+.+||+.+.....-.
T Consensus 36 ~pi~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE 113 (615)
T KOG2247|consen 36 GPIIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLE 113 (615)
T ss_pred ccceeeEecCCCceehhhhhhHHHhhhhh-cceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHh
Confidence 34456788877778888888889999844 44443333 45667788888733344556677899999999754321111
Q ss_pred eecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEE
Q 019847 140 IKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIW 219 (335)
Q Consensus 140 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~ 219 (335)
. +-...-.-+.|++....++.+...|.+.+++.... +.+.....|...+.++++.+.+. .+. ++ .|..+.+-
T Consensus 114 ~-gg~~s~sll~wsKg~~el~ig~~~gn~viynhgts---R~iiv~Gkh~RRgtq~av~lEd~-vil-~d--cd~~L~v~ 185 (615)
T KOG2247|consen 114 S-GGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTS---RRIIVMGKHQRRGTQIAVTLEDY-VIL-CD--CDNTLSVT 185 (615)
T ss_pred c-cCcchHHHHhhccCCccccccccccceEEEeccch---hhhhhhcccccceeEEEecccce-eee-cC--cHHHHHHh
Confidence 1 11111222788998888999999999999996553 33333344888899999999873 333 22 45555444
Q ss_pred ECCCCceEEEeecCCcEeE-----E---EeCCCCceeeeeeeeeeecCCCeEEEE-----ECCCCceeecccCCCCceeE
Q 019847 220 NVQKGTCIHGIDAKAQICG-----L---EWNRHHKEILSGHGFSASGDGNKLCLW-----KYPNMTKVGELQSSNSRILD 286 (335)
Q Consensus 220 d~~~~~~~~~~~~~~~~~~-----~---~~~~~~~~~~~~~~~~~~~~~~~i~i~-----d~~~~~~~~~~~~~~~~i~~ 286 (335)
... ++.....+.+..... + .|...|..+.... .+.+++. ..+...-+ .++...+.+.+
T Consensus 186 ~qe-geta~ltevggepdnm~~~y~k~n~w~kage~m~sVv-------sgKkhl~yak~nE~D~pval-~fq~~~gni~c 256 (615)
T KOG2247|consen 186 TQE-GETASLTEVGGEPDNMDFFYGKVNGWGKAGETMVSVV-------SGKKHLMYAKYNELDEPVAL-QFQEKYGNIHC 256 (615)
T ss_pred hhc-cceeeeeeccCccchhhhheeeeeccccccceeeeee-------ecHHHHHHHhhcCCCCccce-EeeecCCceeE
Confidence 322 222222222221111 1 2333333332211 1111111 01111112 34444556778
Q ss_pred eEEcCCCCEEEEEeCCCcEEEEecCCCCCCCC
Q 019847 287 LSQSPDGLTVATAGADETIRFWEAFGPSGDED 318 (335)
Q Consensus 287 ~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~ 318 (335)
..|--||. |.-+-.-|.|..-...+.+...+
T Consensus 257 yrwylDg~-i~igf~ag~iV~iS~h~aeLgae 287 (615)
T KOG2247|consen 257 YRWYLDGY-ILIGFDAGYIVSISAHNAELGAE 287 (615)
T ss_pred EEEecccc-ccccccceeEEEEeccchHHHHH
Confidence 88888875 44455556666666555544433
No 447
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=95.17 E-value=0.24 Score=38.33 Aligned_cols=62 Identities=10% Similarity=0.130 Sum_probs=46.9
Q ss_pred CCCEEEEeeCCCcEEEEecccCCeeeEE------ee-------cCCCCEEEEEeecCCCEEEEEeCCCeEEEEEcc
Q 019847 112 NGHILTSGSKDKSIINHDVRVSNNVTSC------IK-------AHSGEVCGLKWSNEGNLLASGGDDNVVRIWERS 174 (335)
Q Consensus 112 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~------~~-------~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 174 (335)
.++++++-+.+|.+++||+.+.+..... +. .....|..+.++.+|.-+++-+ +|..+.|+..
T Consensus 21 ~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 21 NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 7788999999999999999876643322 22 3456788888888888777765 5788888854
No 448
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=95.05 E-value=0.27 Score=38.12 Aligned_cols=76 Identities=12% Similarity=0.177 Sum_probs=53.5
Q ss_pred cccceeeeecCCceEEEecCCeEEEEEecCCceeeEE----e-ec-------CCCCCceEEEEcCCCCEEEEEECCCcEE
Q 019847 16 DYYSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLL----Q-VP-------GEDDYPTSVSWSHDAKTLAVGYMDSKLQ 83 (335)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~i~vw~~~~~~~~~~~----~-~~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 83 (335)
...+..+...++.+++.+.+|.+++||+.+++..... . +. .....|..+.++.+|.-+++- .+|..+
T Consensus 12 gs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l-sng~~y 90 (219)
T PF07569_consen 12 GSPVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL-SNGDSY 90 (219)
T ss_pred CCceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE-eCCCEE
Confidence 3445557777888999999999999999987653211 0 11 345678888888888766655 467888
Q ss_pred EEeCCCcee
Q 019847 84 LWDAETSKL 92 (335)
Q Consensus 84 iw~~~~~~~ 92 (335)
.|+..-+.-
T Consensus 91 ~y~~~L~~W 99 (219)
T PF07569_consen 91 SYSPDLGCW 99 (219)
T ss_pred Eecccccee
Confidence 888664433
No 449
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=94.96 E-value=2.5 Score=37.65 Aligned_cols=248 Identities=15% Similarity=0.130 Sum_probs=117.5
Q ss_pred CceEEEecCCeEEEEEecCCce-eeEEeecCC-CCCceEEEEcCCC-CEEEEEEC--CCcEEEEeCCCceeEeeeccccc
Q 019847 27 NNVLAVALGPVLFLWKWENGKV-KKLLQVPGE-DDYPTSVSWSHDA-KTLAVGYM--DSKLQLWDAETSKLVRNLEGHHR 101 (335)
Q Consensus 27 ~~~~~~~~~~~i~vw~~~~~~~-~~~~~~~~~-~~~v~~~~~~~~~-~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~ 101 (335)
+.++.+..+|.+....+..... .....+ +. .....++.+..+| .+|+.|+. |+.+.-|....-+.+..+. .-+
T Consensus 223 ~~~lL~~e~G~l~~l~l~~~~~~i~i~~~-g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~-N~~ 300 (504)
T PF10433_consen 223 DRILLQDEDGDLYLLTLDNDGGSISITYL-GTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLP-NWG 300 (504)
T ss_dssp SEEEEEETTSEEEEEEEEEEEEEEEEEEE-EE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE-----
T ss_pred CEEEEEeCCCeEEEEEEEECCCeEEEEEc-CCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEecc-CcC
Confidence 4688888999999988876442 122222 12 3445667766555 47777775 4555555544445555555 457
Q ss_pred ceeEeeecCC---CCC------EEEEee---CCCcEEEEecccCCe-eeEEeecC--CCCEEEEEeec-CCCEEEEEeCC
Q 019847 102 RVATSSWNHW---NGH------ILTSGS---KDKSIINHDVRVSNN-VTSCIKAH--SGEVCGLKWSN-EGNLLASGGDD 165 (335)
Q Consensus 102 ~v~~~~~~~~---~~~------~l~~~~---~dg~i~~~d~~~~~~-~~~~~~~~--~~~i~~~~~~~-~~~~l~~~~~d 165 (335)
+|..++..+. ... .|++++ .+|.+++..---+-. ........ -..++.+.... ++.+|+.+..+
T Consensus 301 Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S~~~ 380 (504)
T PF10433_consen 301 PIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVLSFPN 380 (504)
T ss_dssp SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEEEESS
T ss_pred CccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeecCCCceEEEEEcCC
Confidence 8888887531 121 455543 567888775321111 01111112 22344444332 24566666644
Q ss_pred CeEEEEEccC---CCccccee--eccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec--CCcEeE
Q 019847 166 NVVRIWERSK---MSSSKSLH--RFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA--KAQICG 238 (335)
Q Consensus 166 g~i~iwd~~~---~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~--~~~~~~ 238 (335)
.-+++.+.. .+....+. .+......+.+-.+. ++ .++=+ ....|++.+...++....... +..|.+
T Consensus 381 -~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~-~~-~ivQV----t~~~i~l~~~~~~~~~~~w~~~~~~~I~~ 453 (504)
T PF10433_consen 381 -ETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG-DG-RIVQV----TPKGIRLIDLEDGKLTQEWKPPAGSIIVA 453 (504)
T ss_dssp -EEEEEEES----SSEEEEE---TS-SSS-EEEEEEET-TT-EEEEE----ESSEEEEEESSSTSEEEEEE-TTS---SE
T ss_pred -ceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC-CC-eEEEE----ecCeEEEEECCCCeEEEEEeCCCCCeEEE
Confidence 555666542 11111111 121112223333332 33 44444 357799999888877766644 334555
Q ss_pred EEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeeccc-----CCCCceeEeEEcC
Q 019847 239 LEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQ-----SSNSRILDLSQSP 291 (335)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~-----~~~~~i~~~~~~~ 291 (335)
.+... .+++.. -.++.+..+.+.......... .....|.++...|
T Consensus 454 a~~~~--~~v~v~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 454 ASIND--PQVLVA------LSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp EEESS--SEEEEE------E-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred EEECC--CEEEEE------EeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence 55443 333333 237888888877665532222 1356688887765
No 450
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.87 E-value=3 Score=37.97 Aligned_cols=156 Identities=8% Similarity=0.052 Sum_probs=80.8
Q ss_pred cceeeeecCC-ceEEEecCCeEEEEEecCCceeeE-EeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEee
Q 019847 18 YSKVIDWGRN-NVLAVALGPVLFLWKWENGKVKKL-LQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRN 95 (335)
Q Consensus 18 ~~~~~~~~~~-~~~~~~~~~~i~vw~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 95 (335)
.+..+.|+.+ .++++..+|.+++|++-....... .-.+.....|..+.+..+|=.+.+ .+|.+.+-+-.......+
T Consensus 85 ~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GVavlt--~~g~v~~i~~~~~~~~~~ 162 (829)
T KOG2280|consen 85 ELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGVAVLT--VSGQVILINGVEEPKLRK 162 (829)
T ss_pred CeeeecccCCceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCceEEEe--cCCcEEEEcCCCcchhhh
Confidence 5667899985 788999999999999865433221 111333445666667666643333 455555544222222233
Q ss_pred ecc---cccceeEeeecCCC--CCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEE
Q 019847 96 LEG---HHRRVATSSWNHWN--GHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRI 170 (335)
Q Consensus 96 ~~~---~~~~v~~~~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 170 (335)
+.. ...+-.|-...++. ...++--...--..++...........+....+.+..+..||+.++|+--...|.|.+
T Consensus 163 ~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~ 242 (829)
T KOG2280|consen 163 MPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWV 242 (829)
T ss_pred CCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCceEEEEEEcCCcceEEEEecCCcEEE
Confidence 322 11111222222211 1111111100001122222221111222222356788999999999999999999998
Q ss_pred EEccC
Q 019847 171 WERSK 175 (335)
Q Consensus 171 wd~~~ 175 (335)
-+...
T Consensus 243 vs~D~ 247 (829)
T KOG2280|consen 243 VSIDL 247 (829)
T ss_pred Eecch
Confidence 87653
No 451
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=94.77 E-value=1.1 Score=38.75 Aligned_cols=134 Identities=14% Similarity=0.166 Sum_probs=85.2
Q ss_pred cCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCC-------EEEEEECCCcEEEEeCCC-ceeEeeecccccceeE
Q 019847 34 LGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAK-------TLAVGYMDSKLQLWDAET-SKLVRNLEGHHRRVAT 105 (335)
Q Consensus 34 ~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~~~v~~ 105 (335)
....++-.|++.|+......+ |.. + -+.|.|+.+ .-++|-.+..|.-.|.+- |..+.... ...-++-
T Consensus 488 ~~~kLykmDIErGkvveeW~~--~dd-v-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e-sKdY~tK 562 (776)
T COG5167 488 ERDKLYKMDIERGKVVEEWDL--KDD-V-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE-SKDYKTK 562 (776)
T ss_pred CcccceeeecccceeeeEeec--CCc-c-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee-ehhcccc
Confidence 445777788889988776665 332 3 567777532 234455555565556542 32222111 1122222
Q ss_pred eeecC---CCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEcc
Q 019847 106 SSWNH---WNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERS 174 (335)
Q Consensus 106 ~~~~~---~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 174 (335)
-.|+. ....++++++..|-|++||-- +......+.+....|..+..+.+|+++++.+ ...+.+-|++
T Consensus 563 n~Fss~~tTesGyIa~as~kGDirLyDRi-g~rAKtalP~lG~aIk~idvta~Gk~ilaTC-k~yllL~d~~ 632 (776)
T COG5167 563 NKFSSGMTTESGYIAAASRKGDIRLYDRI-GKRAKTALPGLGDAIKHIDVTANGKHILATC-KNYLLLTDVP 632 (776)
T ss_pred ccccccccccCceEEEecCCCceeeehhh-cchhhhcCcccccceeeeEeecCCcEEEEee-cceEEEEecc
Confidence 22221 156789999999999999965 4444556777888999999999999888777 4577787765
No 452
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=94.67 E-value=0.2 Score=42.30 Aligned_cols=167 Identities=13% Similarity=0.072 Sum_probs=92.5
Q ss_pred ccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeec-CCCC----EE-EEEeecCCCEEEEEeCCCeEEEE
Q 019847 98 GHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKA-HSGE----VC-GLKWSNEGNLLASGGDDNVVRIW 171 (335)
Q Consensus 98 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~-~~~~----i~-~~~~~~~~~~l~~~~~dg~i~iw 171 (335)
.....+..+-..| +++.+..-+. .++.++++.+.....+.+.. ..+. |+ .+..-..|.-+.+++.||-|.-|
T Consensus 218 ~~~~~v~qllL~P-dg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQW 295 (733)
T COG4590 218 VPFSDVSQLLLTP-DGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQW 295 (733)
T ss_pred CCccchHhhEECC-CCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeee
Confidence 3445666777778 8888877665 67888888644322222111 1111 11 11112245668888899988766
Q ss_pred -EccCCCccc--ceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCcee
Q 019847 172 -ERSKMSSSK--SLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEI 248 (335)
Q Consensus 172 -d~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (335)
|.+...... .++.++-...++..+.-..+. .-+++-. .+|++.++.....+.+-.-..-..+.-+++||++.++
T Consensus 296 Fdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~r-kgF~~l~--~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~~~L 372 (733)
T COG4590 296 FDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNR-KGFYSLY--RNGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQAYL 372 (733)
T ss_pred eeeecCCCCcceeeeccccCcccceeecccccc-ceEEEEc--CCCceeeeecccCcceehhhhhcCcceeeeCcccchh
Confidence 655443211 122222222333333222222 2333333 6777777765544443333333456778999999999
Q ss_pred eeeeeeeeecCCCeEEEEECCCCceeec
Q 019847 249 LSGHGFSASGDGNKLCLWKYPNMTKVGE 276 (335)
Q Consensus 249 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~ 276 (335)
++- +.|.++++.+++..+.-+
T Consensus 373 l~e-------~~gki~~~~l~Nr~Peis 393 (733)
T COG4590 373 LSE-------DQGKIRLAQLENRNPEIS 393 (733)
T ss_pred eee-------cCCceEEEEecCCCCCcc
Confidence 874 578999999887665433
No 453
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.54 E-value=0.091 Score=47.98 Aligned_cols=117 Identities=14% Similarity=0.117 Sum_probs=68.3
Q ss_pred CCcEEEEeCCCce-eEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccC--C----eeeEEeecCCCCEEEEE
Q 019847 79 DSKLQLWDAETSK-LVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVS--N----NVTSCIKAHSGEVCGLK 151 (335)
Q Consensus 79 dg~i~iw~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~--~----~~~~~~~~~~~~i~~~~ 151 (335)
.+.+++-+..+.- .-..+++..+.+..+.|...+-..+. -.-|.+.+||+..- + ..+.........+.-+.
T Consensus 110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~ 187 (1283)
T KOG1916|consen 110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVS 187 (1283)
T ss_pred hhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceee
Confidence 4567777655432 11234566778888888654433333 44578899987631 1 12222333344456666
Q ss_pred eec---CCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCC
Q 019847 152 WSN---EGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQ 201 (335)
Q Consensus 152 ~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 201 (335)
|.| +.-++..+..++.+++...++.. ...+.+|...+..++|-..|
T Consensus 188 wcp~~~~~~~ic~~~~~~~i~lL~~~ra~----~~l~rsHs~~~~d~a~~~~g 236 (1283)
T KOG1916|consen 188 WCPIAVNKVYICYGLKGGEIRLLNINRAL----RSLFRSHSQRVTDMAFFAEG 236 (1283)
T ss_pred ecccccccceeeeccCCCceeEeeechHH----HHHHHhcCCCcccHHHHhhc
Confidence 665 66778888888999988766532 23444577666666554433
No 454
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=94.46 E-value=0.57 Score=42.18 Aligned_cols=72 Identities=19% Similarity=0.201 Sum_probs=45.5
Q ss_pred cCCceEEEecCCeEEEEEecC----CceeeEEeecC--------------------CCCCceEEEEcC----CCCEEEEE
Q 019847 25 GRNNVLAVALGPVLFLWKWEN----GKVKKLLQVPG--------------------EDDYPTSVSWSH----DAKTLAVG 76 (335)
Q Consensus 25 ~~~~~~~~~~~~~i~vw~~~~----~~~~~~~~~~~--------------------~~~~v~~~~~~~----~~~~l~~~ 76 (335)
++..++++..||.+....... +.......+.. ....+..+++++ +..+|++-
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 667888888999888888764 22111111111 123456667766 77899999
Q ss_pred ECCCcEEEEeCCCceeEeee
Q 019847 77 YMDSKLQLWDAETSKLVRNL 96 (335)
Q Consensus 77 ~~dg~i~iw~~~~~~~~~~~ 96 (335)
+.|+.+|+||+.+++++...
T Consensus 237 ~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 237 SRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp ETTSEEEEEETTTTCEEEEE
T ss_pred eCCCeEEEEECCCCeEEEEe
Confidence 99999999999999986654
No 455
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=94.41 E-value=1.1 Score=31.15 Aligned_cols=88 Identities=13% Similarity=0.115 Sum_probs=57.2
Q ss_pred EEeecCCCEEEEEeCCCeEEEEEccCCCc-----ccceeeccCCCCCeeEEEecC----CCCcEEEEecCCCCCeEEEEE
Q 019847 150 LKWSNEGNLLASGGDDNVVRIWERSKMSS-----SKSLHRFTDHCGGVKALAWSP----HQVNVLATGGGREDGCIKIWN 220 (335)
Q Consensus 150 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~~v~~~~~~~----~~~~~~~~~~g~~d~~i~i~d 220 (335)
-.|......|+.++.-|+|.|++...... ...+..+ .-...|++++--+ ++..++..| ....+..||
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliG---t~t~llaYD 79 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIG---TQTSLLAYD 79 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEe---ccceEEEEE
Confidence 34555666788888999999998654321 1122222 2455677776544 334577777 488999999
Q ss_pred CCCCceEEEeecCCcEeEEEe
Q 019847 221 VQKGTCIHGIDAKAQICGLEW 241 (335)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~ 241 (335)
+.+...+..-+.+..+.++.+
T Consensus 80 V~~N~d~Fyke~~DGvn~i~~ 100 (136)
T PF14781_consen 80 VENNSDLFYKEVPDGVNAIVI 100 (136)
T ss_pred cccCchhhhhhCccceeEEEE
Confidence 998877666566666666655
No 456
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=94.33 E-value=1.8 Score=34.99 Aligned_cols=114 Identities=20% Similarity=0.335 Sum_probs=69.4
Q ss_pred CcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEee------CCCcEEEEecccCCeeeEEeec-----CCCCEE
Q 019847 80 SKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGS------KDKSIINHDVRVSNNVTSCIKA-----HSGEVC 148 (335)
Q Consensus 80 g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~------~dg~i~~~d~~~~~~~~~~~~~-----~~~~i~ 148 (335)
..|++||..+.+....-.+-.+.|+.+.|.. +..+++.|. ....+..||..+... ..+.. -.+++.
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~-~~~Llv~G~ft~~~~~~~~la~yd~~~~~w--~~~~~~~s~~ipgpv~ 92 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWAS-NNQLLVGGNFTLNGTNSSNLATYDFKNQTW--SSLGGGSSNSIPGPVT 92 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEec-CCEEEEEEeeEECCCCceeEEEEecCCCee--eecCCcccccCCCcEE
Confidence 4699999988877766666778999999986 677777764 355788888875432 22222 347888
Q ss_pred EEEeec-CC-CEEEEEe-C--CCeEEEEEccCCCcccceee-ccCCCCCeeEEEecC
Q 019847 149 GLKWSN-EG-NLLASGG-D--DNVVRIWERSKMSSSKSLHR-FTDHCGGVKALAWSP 199 (335)
Q Consensus 149 ~~~~~~-~~-~~l~~~~-~--dg~i~iwd~~~~~~~~~~~~-~~~~~~~v~~~~~~~ 199 (335)
.+.+.. ++ ++.+.|. . +..|..|| +.....+.. .......|..+.+-|
T Consensus 93 a~~~~~~d~~~~~~aG~~~~g~~~l~~~d---Gs~W~~i~~~~~~~~t~I~~l~~~~ 146 (281)
T PF12768_consen 93 ALTFISNDGSNFWVAGRSANGSTFLMKYD---GSSWSSIGSDILGSGTTIRGLQVLP 146 (281)
T ss_pred EEEeeccCCceEEEeceecCCCceEEEEc---CCceEeccccccCCCCEEEEEEEEe
Confidence 888754 33 3444443 2 33577777 433443433 222234455555443
No 457
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=94.22 E-value=2.8 Score=34.86 Aligned_cols=99 Identities=11% Similarity=0.086 Sum_probs=51.2
Q ss_pred eeeecCCceEEEec------CCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCC----cEEEEeCCCc
Q 019847 21 VIDWGRNNVLAVAL------GPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDS----KLQLWDAETS 90 (335)
Q Consensus 21 ~~~~~~~~~~~~~~------~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~iw~~~~~ 90 (335)
+.+..++.+++.+. ...+..||+.+.+......++... .....+...++++.+.|+.++ .+.+||.++.
T Consensus 118 ~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~-r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~ 196 (323)
T TIGR03548 118 SACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEP-RVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKN 196 (323)
T ss_pred eEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCC-CCcceEEEECCEEEEEcCCCCccccceEEEecCCC
Confidence 33444555555443 246888998888765543333211 112222334677778887654 3568888876
Q ss_pred eeEeeecc----ccc---ceeEeeecCCCCCEEEEeeCC
Q 019847 91 KLVRNLEG----HHR---RVATSSWNHWNGHILTSGSKD 122 (335)
Q Consensus 91 ~~~~~~~~----~~~---~v~~~~~~~~~~~~l~~~~~d 122 (335)
+-...-.. ... ....+.. . ++.+++.|+.+
T Consensus 197 ~W~~~~~~~~~~~p~~~~~~~~~~~-~-~~~iyv~GG~~ 233 (323)
T TIGR03548 197 QWQKVADPTTDSEPISLLGAASIKI-N-ESLLLCIGGFN 233 (323)
T ss_pred eeEECCCCCCCCCceeccceeEEEE-C-CCEEEEECCcC
Confidence 54322110 011 1111222 2 57788888876
No 458
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=94.17 E-value=3.7 Score=36.15 Aligned_cols=274 Identities=17% Similarity=0.099 Sum_probs=135.2
Q ss_pred CCcccccceeeeecCCceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCce
Q 019847 12 YLMEDYYSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSK 91 (335)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 91 (335)
....+..+.++-++-+..+-++.+.-+..||..+++..+.-.. ....+|..+..+-+| .|.+|+.+| +.+.+.+..+
T Consensus 160 ~ll~d~~V~aLv~D~~g~lWvgT~dGL~~fd~~~gkalql~s~-~~dk~I~al~~d~qg-~LWVGTdqG-v~~~e~~G~~ 236 (671)
T COG3292 160 PLLKDTPVVALVFDANGRLWVGTPDGLSYFDAGRGKALQLASP-PLDKAINALIADVQG-RLWVGTDQG-VYLQEAEGWR 236 (671)
T ss_pred ccccCccceeeeeeccCcEEEecCCcceEEccccceEEEcCCC-cchhhHHHHHHHhcC-cEEEEeccc-eEEEchhhcc
Confidence 4445667777777775555555555688888888876544322 223567766666566 477787776 8888876643
Q ss_pred eEeeeccc-ccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecC--CCCEEEEEeecCCCEEEEEeCCCeE
Q 019847 92 LVRNLEGH-HRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAH--SGEVCGLKWSNEGNLLASGGDDNVV 168 (335)
Q Consensus 92 ~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~i 168 (335)
........ .+.|..+.-. ....+-.|+.+|..+.- ...........+.| -+.|.++.-..+|. |-+++.+|.+
T Consensus 237 ~sn~~~~lp~~~I~ll~qD--~qG~lWiGTenGl~r~~-l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGs-LWv~t~~giv 312 (671)
T COG3292 237 ASNWGPMLPSGNILLLVQD--AQGELWIGTENGLWRTR-LPRQGLQIPLSKMHLGVSTVNSLWLDTDGS-LWVGTYGGIV 312 (671)
T ss_pred ccccCCCCcchheeeeecc--cCCCEEEeecccceeEe-cCCCCccccccccCCccccccceeeccCCC-EeeeccCceE
Confidence 33322222 2333333332 33445566666644322 22122111111122 23456665555665 6666667666
Q ss_pred EEEEccCCCcccceeeccCCCCCe-eEEEecC--CCCcEEEEecCCCCCeEEEEECCCCceEEEeec--CCcEeEEEeCC
Q 019847 169 RIWERSKMSSSKSLHRFTDHCGGV-KALAWSP--HQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA--KAQICGLEWNR 243 (335)
Q Consensus 169 ~iwd~~~~~~~~~~~~~~~~~~~v-~~~~~~~--~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~--~~~~~~~~~~~ 243 (335)
++-+-. ......+....+.+ -..+..| .+..+...- .-|.+.+-+-.++..+..... +..++..++..
T Consensus 313 ~~~~a~----w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~n---s~g~L~van~stG~~v~sv~q~Rg~nit~~~~d~ 385 (671)
T COG3292 313 RYLTAD----WKRMAVINDSDGGVSQYEAVAPALLSWGVRQLN---SIGELMVANGSTGELVRSVHQLRGMNITTTLEDS 385 (671)
T ss_pred EEecch----hhheeeeecCCCchhhhhccCchhcccceeecc---ccceEEEecCCCCcEEEEeeeccccccchhhhcc
Confidence 654421 11111111111111 1111122 111111110 123344444455555444321 23456666666
Q ss_pred CCceeeeeeeeeeecCCCeEEEEECCC-CceeecccC-CCCceeEeEEcCCCCEEEEEeCCCcEEE
Q 019847 244 HHKEILSGHGFSASGDGNKLCLWKYPN-MTKVGELQS-SNSRILDLSQSPDGLTVATAGADETIRF 307 (335)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~i~i~d~~~-~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~v~i 307 (335)
++..-+. +..+-+..|+.++ +.......+ ..++|..+-=.|+++ |..|+.+|.++.
T Consensus 386 ~g~lWlg-------s~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk~ 443 (671)
T COG3292 386 RGRLWLG-------SMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVKR 443 (671)
T ss_pred CCcEEEE-------ecccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCeEec
Confidence 5544332 3344555666555 333333222 345788888888888 777888886653
No 459
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.10 E-value=4.7 Score=37.05 Aligned_cols=146 Identities=12% Similarity=0.174 Sum_probs=85.9
Q ss_pred CCEEEEEeCCCeEEEEEccCCCcccc---eeecc----------------CCCCCeeEEEecCC-CCcEEEEecCCCCCe
Q 019847 156 GNLLASGGDDNVVRIWERSKMSSSKS---LHRFT----------------DHCGGVKALAWSPH-QVNVLATGGGREDGC 215 (335)
Q Consensus 156 ~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~----------------~~~~~v~~~~~~~~-~~~~~~~~~g~~d~~ 215 (335)
.++++++. .+.|.||+++....... ...+. .....|+.+....- +..+++.+. +||.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~--DdG~ 125 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCT--DDGD 125 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEe--cCCe
Confidence 55666655 67899998764332110 00000 01122444433322 234555555 8999
Q ss_pred EEEEECCC-------C-------------ceEEEeecCCcEeEEEeC--CCCceeeeeeeeeeecCCCeEEEEECCCC-c
Q 019847 216 IKIWNVQK-------G-------------TCIHGIDAKAQICGLEWN--RHHKEILSGHGFSASGDGNKLCLWKYPNM-T 272 (335)
Q Consensus 216 i~i~d~~~-------~-------------~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~i~d~~~~-~ 272 (335)
|.+|.+++ . ++...+..+....+++++ ...+++|++ +....|.||-.... +
T Consensus 126 V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVS------sNs~~VTVFaf~l~~~ 199 (717)
T PF08728_consen 126 VLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVS------SNSQEVTVFAFALVDE 199 (717)
T ss_pred EEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEe------cCCceEEEEEEecccc
Confidence 99997621 0 122333446678889988 777777776 66777888765432 1
Q ss_pred eeec--ccCCCCceeEeEEcCCC------CEEEEEeCCCcEEEEec
Q 019847 273 KVGE--LQSSNSRILDLSQSPDG------LTVATAGADETIRFWEA 310 (335)
Q Consensus 273 ~~~~--~~~~~~~i~~~~~~~~~------~~l~~~~~dg~v~iw~~ 310 (335)
.... -..|...|.+|+|-++. ..|++++-.|.+.+|++
T Consensus 200 r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 200 RFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 1111 11245568899987753 27888899999999888
No 460
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=93.79 E-value=1.2 Score=33.04 Aligned_cols=30 Identities=23% Similarity=0.412 Sum_probs=24.8
Q ss_pred CCEEEEEeecCC------CEEEEEeCCCeEEEEEcc
Q 019847 145 GEVCGLKWSNEG------NLLASGGDDNVVRIWERS 174 (335)
Q Consensus 145 ~~i~~~~~~~~~------~~l~~~~~dg~i~iwd~~ 174 (335)
..+..++|||.| -+||+.+.++.|.+|...
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 478999999943 478889999999999844
No 461
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=93.73 E-value=6.5 Score=37.41 Aligned_cols=87 Identities=11% Similarity=0.124 Sum_probs=61.0
Q ss_pred CCCCcccccceeeeecCCceEEEecCCeEEEEEec-CCceeeEEeecCCCCCceEEEEcCCC------CEEEEEECCCcE
Q 019847 10 APYLMEDYYSKVIDWGRNNVLAVALGPVLFLWKWE-NGKVKKLLQVPGEDDYPTSVSWSHDA------KTLAVGYMDSKL 82 (335)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vw~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~------~~l~~~~~dg~i 82 (335)
.-..|....+.+.+.+...++.+-+++.+.-+..+ ++++....+-..-+..|.|+++.+++ ++++.++.|+.+
T Consensus 533 ew~~P~~~~Iv~~avnr~qiVvalSngelvyfe~d~sgql~E~~er~tl~~~vac~ai~~~~~g~krsrfla~a~~d~~v 612 (1205)
T KOG1898|consen 533 EWKTPERVRIVKCAVNRRQIVVALSNGELVYFEGDVSGQLNEFTERVTLSTDVACLAIGQDPEGEKRSRFLALASVDNMV 612 (1205)
T ss_pred cccCCCceEEEEEeecceEEEEEccCCeEEEEEeccCccceeeeeeeeeceeehhhccCCCCcchhhcceeeeeccccce
Confidence 33456777777888888888888888888777764 34443333223345678899998864 579999999999
Q ss_pred EEEeCCCceeEeee
Q 019847 83 QLWDAETSKLVRNL 96 (335)
Q Consensus 83 ~iw~~~~~~~~~~~ 96 (335)
+++.+.....+..+
T Consensus 613 riisL~p~d~l~~l 626 (1205)
T KOG1898|consen 613 RIISLDPSDCLQPL 626 (1205)
T ss_pred eEEEecCcceEEEc
Confidence 99988755544443
No 462
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=93.67 E-value=3.8 Score=34.56 Aligned_cols=189 Identities=16% Similarity=0.237 Sum_probs=106.9
Q ss_pred CCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeec----CCCE--EEEEe-CC---CeEEEEEccCCCcccc
Q 019847 112 NGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSN----EGNL--LASGG-DD---NVVRIWERSKMSSSKS 181 (335)
Q Consensus 112 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~--l~~~~-~d---g~i~iwd~~~~~~~~~ 181 (335)
...+++....++-+.+||+. ++.+ +.+. .+.++.+..-. .++. |+.++ .+ ..|++|.+.... ..
T Consensus 67 ~kSlIigTdK~~GL~VYdL~-Gk~l-q~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~--g~ 140 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLD-GKEL-QSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDT--GE 140 (381)
T ss_dssp GG-EEEEEETTTEEEEEETT-S-EE-EEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTT--TE
T ss_pred ccceEEEEeCCCCEEEEcCC-CcEE-Eeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCC--Cc
Confidence 55678888888999999997 5443 3332 23444444321 3332 44444 32 469999876321 12
Q ss_pred eeeccC-------CCCCeeEEEe--cC-CCCcEEEEecCCCCCeEEEEECC---CC----ceEEEeecCCcEeEEEeCCC
Q 019847 182 LHRFTD-------HCGGVKALAW--SP-HQVNVLATGGGREDGCIKIWNVQ---KG----TCIHGIDAKAQICGLEWNRH 244 (335)
Q Consensus 182 ~~~~~~-------~~~~v~~~~~--~~-~~~~~~~~~~g~~d~~i~i~d~~---~~----~~~~~~~~~~~~~~~~~~~~ 244 (335)
+..+.. ....+..+|+ +| ++...+.... .+|.+..|.+. ++ +.++.+.....+..+..+..
T Consensus 141 L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~--k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe 218 (381)
T PF02333_consen 141 LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNG--KDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDE 218 (381)
T ss_dssp EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEE--TTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETT
T ss_pred ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEec--CCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecc
Confidence 322221 1234666776 34 3544555444 78988888764 33 46788888889999999999
Q ss_pred CceeeeeeeeeeecCCCeEEEEECCC-----CceeecccC--CCCceeEeEEc--CCC-CEEEEEe-CCCcEEEEecCCC
Q 019847 245 HKEILSGHGFSASGDGNKLCLWKYPN-----MTKVGELQS--SNSRILDLSQS--PDG-LTVATAG-ADETIRFWEAFGP 313 (335)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~i~i~d~~~-----~~~~~~~~~--~~~~i~~~~~~--~~~-~~l~~~~-~dg~v~iw~~~~~ 313 (335)
...++.+ .++.-|.-|+.+. ++.+....+ ....|..|++- +++ .||++++ .++...+|+...+
T Consensus 219 ~g~LYvg------EE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 219 TGRLYVG------EEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp TTEEEEE------ETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred cCCEEEe------cCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 8888887 6677777777652 223322222 33467777764 333 3555444 5778999998865
Q ss_pred C
Q 019847 314 S 314 (335)
Q Consensus 314 ~ 314 (335)
.
T Consensus 293 ~ 293 (381)
T PF02333_consen 293 N 293 (381)
T ss_dssp -
T ss_pred C
Confidence 3
No 463
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=93.05 E-value=1 Score=33.45 Aligned_cols=31 Identities=10% Similarity=0.163 Sum_probs=25.4
Q ss_pred cceeEeeecCC-----CCCEEEEeeCCCcEEEEecc
Q 019847 101 RRVATSSWNHW-----NGHILTSGSKDKSIINHDVR 131 (335)
Q Consensus 101 ~~v~~~~~~~~-----~~~~l~~~~~dg~i~~~d~~ 131 (335)
..+..++|+|. ..-+|++.+.++.+.+|...
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 48999999983 24578889999999999865
No 464
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=93.05 E-value=0.69 Score=24.59 Aligned_cols=31 Identities=19% Similarity=0.246 Sum_probs=24.5
Q ss_pred CCCCEEEEEE-CCCcEEEEeCCCceeEeeecc
Q 019847 68 HDAKTLAVGY-MDSKLQLWDAETSKLVRNLEG 98 (335)
Q Consensus 68 ~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~ 98 (335)
|++++|+++. .+++|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 5777776665 578999999999888887765
No 465
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.04 E-value=1.1 Score=43.24 Aligned_cols=163 Identities=12% Similarity=0.098 Sum_probs=86.7
Q ss_pred eCCCcEEEEecccCCeeeEEeecCCCCEEEEEe--------ecCCCEEEEEeCCCeEEEEEccCCCcccceeecc-----
Q 019847 120 SKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKW--------SNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFT----- 186 (335)
Q Consensus 120 ~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~--------~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----- 186 (335)
+.|+.+.+|+.+++.. ...+.+.+..|..+.. -|.=++++.-+.--.|.++-+...........+.
T Consensus 96 TiDn~L~lWny~~~~e-~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i 174 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNE-LAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKI 174 (1311)
T ss_pred EeCCeEEEEEcCCCCc-cccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceee
Confidence 3578999999997554 3445555556655543 2222344444445667776554322211122221
Q ss_pred -CCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECC--CCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeE
Q 019847 187 -DHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQ--KGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKL 263 (335)
Q Consensus 187 -~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 263 (335)
.....|+++....+| +++.+| .|| .+|.+. ...- -+ ......++. ....+..-
T Consensus 175 ~~dg~~V~~I~~t~nG-RIF~~G---~dg--~lyEl~Yq~~~g--Wf--~~rc~Kicl--t~s~ls~l------------ 230 (1311)
T KOG1900|consen 175 SVDGVSVNCITYTENG-RIFFAG---RDG--NLYELVYQAEDG--WF--GSRCRKICL--TKSVLSSL------------ 230 (1311)
T ss_pred ecCCceEEEEEeccCC-cEEEee---cCC--CEEEEEEeccCc--hh--hcccccccC--chhHHHHh------------
Confidence 224557788866666 566666 566 444331 1000 00 000000110 00000000
Q ss_pred EEEECCCCceeecc-cCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCC
Q 019847 264 CLWKYPNMTKVGEL-QSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPS 314 (335)
Q Consensus 264 ~i~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~ 314 (335)
+. . +..+ -.+..+|..++.......+.+-+..|.|++|++....
T Consensus 231 ----vP--s-~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G 275 (1311)
T KOG1900|consen 231 ----VP--S-LLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNG 275 (1311)
T ss_pred ----hh--h-hhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccCCC
Confidence 00 1 1122 2566789999999988899999999999999998743
No 466
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.00 E-value=4.7 Score=35.19 Aligned_cols=135 Identities=13% Similarity=0.104 Sum_probs=0.0
Q ss_pred EEeecCCCEEEEEeCCCeEEEEEcc---------CCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEE
Q 019847 150 LKWSNEGNLLASGGDDNVVRIWERS---------KMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWN 220 (335)
Q Consensus 150 ~~~~~~~~~l~~~~~dg~i~iwd~~---------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d 220 (335)
+.|..| ..++--+.|..+.+-+++ .....+.+.....-.-.|..+..++.|..++.+|. +|.+.++=
T Consensus 56 ~~~~gD-~lf~Wd~~ds~Llv~~lR~~~~~~~~~a~~q~q~l~P~~~V~feV~~vl~s~~GS~VaL~G~---~Gi~vMeL 131 (741)
T KOG4460|consen 56 VFGLGD-ELFLWDGEDSSLLVVRLRGPSGGGEEPALSQYQRLLPINPVLFEVYQVLLSPTGSHVALIGI---KGLMVMEL 131 (741)
T ss_pred hcccCC-EEEEEecCcceEEEEEeccCCCCcccccccccceeccCCcceEEEEEEEecCCCceEEEecC---CeeEEEEc
Q ss_pred CCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCC---CEEE
Q 019847 221 VQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDG---LTVA 297 (335)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~ 297 (335)
.+..-.-..++.+.++..+...+-+..+++. ...-.+..++|+|+. ..|.
T Consensus 132 p~rwG~~s~~eDgk~~v~CRt~~i~~~~fts---------------------------s~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 132 PKRWGKNSEFEDGKSTVNCRTTPVAERFFTS---------------------------STSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred hhhcCccceecCCCceEEEEeecccceeecc---------------------------CCceeeeeccccCCccCCceEE
Q ss_pred EEeCCCcEEEEecCCCCC
Q 019847 298 TAGADETIRFWEAFGPSG 315 (335)
Q Consensus 298 ~~~~dg~v~iw~~~~~~~ 315 (335)
.-+.|..+|+|++.....
T Consensus 185 iL~sdnviRiy~lS~~te 202 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPTE 202 (741)
T ss_pred EEecCcEEEEEecCCcch
No 467
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=92.89 E-value=4.6 Score=33.22 Aligned_cols=231 Identities=10% Similarity=-0.057 Sum_probs=107.8
Q ss_pred CCCEEEEEECCCcEEEEeCCC--ceeEeeecccccceeEeeecCCCCCEEE-EeeCCCcEEEEecccCCe----------
Q 019847 69 DAKTLAVGYMDSKLQLWDAET--SKLVRNLEGHHRRVATSSWNHWNGHILT-SGSKDKSIINHDVRVSNN---------- 135 (335)
Q Consensus 69 ~~~~l~~~~~dg~i~iw~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~dg~i~~~d~~~~~~---------- 135 (335)
++++|+.|+.+| +.+.++.. ++..+.+ +...|+++...+ ..+.|+ .++....++.+++..-..
T Consensus 12 ~~~~lL~GTe~G-ly~~~~~~~~~~~~kl~--~~~~v~q~~v~~-~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~ 87 (302)
T smart00036 12 DGKWLLVGTEEG-LYVLNISDQPGTLEKLI--GRRSVTQIWVLE-ENNVLLMISGKKPQLYSHPLSALVEKKEALGSARL 87 (302)
T ss_pred CCcEEEEEeCCc-eEEEEcccCCCCeEEec--CcCceEEEEEEh-hhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccc
Confidence 346899999998 55555654 3344333 456899999988 555444 444555699999843221
Q ss_pred ----eeEEeecCCCCEEEEEeecC-CCEEEEEeCCCeEEEEEccCCC-cccceeec----cCCCCCeeEEEecCCC-CcE
Q 019847 136 ----VTSCIKAHSGEVCGLKWSNE-GNLLASGGDDNVVRIWERSKMS-SSKSLHRF----TDHCGGVKALAWSPHQ-VNV 204 (335)
Q Consensus 136 ----~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~----~~~~~~v~~~~~~~~~-~~~ 204 (335)
......++............ ...++.+....+|.++...... .....+.+ .....++..+..+++. ..-
T Consensus 88 ~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (302)
T smart00036 88 VIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPG 167 (302)
T ss_pred cccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceE
Confidence 00112233333333333322 2233444556677776543221 11111110 0112233333333331 223
Q ss_pred EEEecCCCCCeEEEEECCC--CceEE----E-eecCC-cEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCcee--
Q 019847 205 LATGGGREDGCIKIWNVQK--GTCIH----G-IDAKA-QICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKV-- 274 (335)
Q Consensus 205 ~~~~~g~~d~~i~i~d~~~--~~~~~----~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~-- 274 (335)
+..|+ ..+...++++.. ..... . ..... ...++..-+++.++++- +....+.|....+..
T Consensus 168 lcvG~--~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l~~~e~Llc~--------~~~~v~Vn~~G~~~~r~ 237 (302)
T smart00036 168 ICIGS--DKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQVPRDEFLLCY--------DEFGVFVNLYGKRRSRN 237 (302)
T ss_pred EEEEE--cCCCCeEEEEeecccccccccccccccccccCceEEEEECCCeEEEEE--------CcEEEEEeCCCCccccc
Confidence 44443 222344455432 11000 0 00011 23333333445555543 455555554431111
Q ss_pred ecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCC
Q 019847 275 GELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDE 317 (335)
Q Consensus 275 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~ 317 (335)
..+. -.....++++.. .+|+.-+. ..|.++++.++...+
T Consensus 238 ~~l~-w~~~p~~~~~~~--pyll~~~~-~~ievr~l~~~~l~q 276 (302)
T smart00036 238 PILH-WEFMPESFAYHS--PYLLAFHD-NGIEIRSIKTGELLQ 276 (302)
T ss_pred eEEE-cCCcccEEEEEC--CEEEEEcC-CcEEEEECCCCceEE
Confidence 1111 233456777764 47776654 559999999876543
No 468
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.85 E-value=3.3 Score=31.44 Aligned_cols=168 Identities=15% Similarity=0.190 Sum_probs=84.4
Q ss_pred CCCEEEEeeCCC--cEEEEecccCCeeeEEeec----CCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeec
Q 019847 112 NGHILTSGSKDK--SIINHDVRVSNNVTSCIKA----HSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRF 185 (335)
Q Consensus 112 ~~~~l~~~~~dg--~i~~~d~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 185 (335)
++.++.+.+.-| .|++||+++++........ ....++.+ .+ .+.+..-.||.-..+|.++.+ .+..+
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~---gd-~~y~LTw~egvaf~~d~~t~~---~lg~~ 127 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKL---GD-YFYQLTWKEGVAFKYDADTLE---ELGRF 127 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeec---cc-eEEEEEeccceeEEEChHHhh---hhccc
Confidence 566777766544 7999999977764433222 11112211 12 222333568888889976633 33332
Q ss_pred cCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec---CCc---EeEEEeCCCCceeeeeeeeeeecC
Q 019847 186 TDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA---KAQ---ICGLEWNRHHKEILSGHGFSASGD 259 (335)
Q Consensus 186 ~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 259 (335)
. .++.=..++ .+++.++.+.+ ...++.-|.++.....++.. ..+ ++.+.|- +|...+-. -.
T Consensus 128 ~-y~GeGWgLt--~d~~~LimsdG---satL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANV------w~ 194 (262)
T COG3823 128 S-YEGEGWGLT--SDDKNLIMSDG---SATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANV------WQ 194 (262)
T ss_pred c-cCCcceeee--cCCcceEeeCC---ceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEee------ee
Confidence 2 233334444 45666777543 45666667665544433321 112 2233332 22222211 12
Q ss_pred CCeEEEEECCCCceeecc------------cCCCCceeEeEEcCCC-CEEEEE
Q 019847 260 GNKLCLWKYPNMTKVGEL------------QSSNSRILDLSQSPDG-LTVATA 299 (335)
Q Consensus 260 ~~~i~i~d~~~~~~~~~~------------~~~~~~i~~~~~~~~~-~~l~~~ 299 (335)
+..|...|..+++.+..+ ..|..-.+.+++.|++ ++++||
T Consensus 195 t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 195 TTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred ecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 334444455555544332 2344567889999987 566665
No 469
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=92.81 E-value=2.3 Score=29.65 Aligned_cols=115 Identities=13% Similarity=0.165 Sum_probs=70.2
Q ss_pred eeecCCCCCEEEEeeCCCcEEEEecccCCeee------EEeecCCCCEEEEEeec-----CCCEEEEEeCCCeEEEEEcc
Q 019847 106 SSWNHWNGHILTSGSKDKSIINHDVRVSNNVT------SCIKAHSGEVCGLKWSN-----EGNLLASGGDDNVVRIWERS 174 (335)
Q Consensus 106 ~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~------~~~~~~~~~i~~~~~~~-----~~~~l~~~~~dg~i~iwd~~ 174 (335)
-+|.. ....|++++.-|.|.+++........ ..+......|++++-.+ +...|+.|+ ...+..||+.
T Consensus 4 GkfDG-~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~ 81 (136)
T PF14781_consen 4 GKFDG-VHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVE 81 (136)
T ss_pred EEeCC-CceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcc
Confidence 45555 55678888899999999876432111 12233566788876544 345677776 5679999988
Q ss_pred CCCcccceeeccCCCCCeeEEEec---CCCCcEEEEecCCCCCeEEEEECCCCceEEE
Q 019847 175 KMSSSKSLHRFTDHCGGVKALAWS---PHQVNVLATGGGREDGCIKIWNVQKGTCIHG 229 (335)
Q Consensus 175 ~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~ 229 (335)
.... +.. +.-...++++.+- .....++.+|+ +..|.-||.+..+...+
T Consensus 82 ~N~d---~Fy-ke~~DGvn~i~~g~~~~~~~~l~ivGG---ncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 82 NNSD---LFY-KEVPDGVNAIVIGKLGDIPSPLVIVGG---NCSIQGFDYEGNEIFWT 132 (136)
T ss_pred cCch---hhh-hhCccceeEEEEEecCCCCCcEEEECc---eEEEEEeCCCCcEEEEE
Confidence 6433 211 1234567776652 22335777775 77888888765554433
No 470
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.78 E-value=4.5 Score=39.37 Aligned_cols=142 Identities=15% Similarity=0.198 Sum_probs=83.8
Q ss_pred eEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEE--------cCCCCEEEEEECCCcEEEEeCCC----ceeE---
Q 019847 29 VLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSW--------SHDAKTLAVGYMDSKLQLWDAET----SKLV--- 93 (335)
Q Consensus 29 ~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~--------~~~~~~l~~~~~dg~i~iw~~~~----~~~~--- 93 (335)
.+-.+.|+.+.+|+.+++...+. +.+-...|..+.. .|.=+++++-..--.|.++-+.- +..-
T Consensus 92 RaWiTiDn~L~lWny~~~~e~~~--~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~ 169 (1311)
T KOG1900|consen 92 RAWITIDNNLFLWNYESDNELAE--YDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFN 169 (1311)
T ss_pred ceEEEeCCeEEEEEcCCCCcccc--ccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccc
Confidence 34456799999999998554333 2333444555543 23223444433344566664431 1110
Q ss_pred --eeecccccceeEeeecCCCCCEEEEeeCCCcEEEEec--ccCC----------------------eeeEEeecCCCCE
Q 019847 94 --RNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDV--RVSN----------------------NVTSCIKAHSGEV 147 (335)
Q Consensus 94 --~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~--~~~~----------------------~~~~~~~~~~~~i 147 (335)
..+......|.++.... +|++|++|- ||. +|.+ .... .+.+....+..+|
T Consensus 170 ~~~~i~~dg~~V~~I~~t~-nGRIF~~G~-dg~--lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI 245 (1311)
T KOG1900|consen 170 TSFKISVDGVSVNCITYTE-NGRIFFAGR-DGN--LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPI 245 (1311)
T ss_pred cceeeecCCceEEEEEecc-CCcEEEeec-CCC--EEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcc
Confidence 11222355788888665 777777655 554 4433 1100 0111112457799
Q ss_pred EEEEeecCCCEEEEEeCCCeEEEEEccCC
Q 019847 148 CGLKWSNEGNLLASGGDDNVVRIWERSKM 176 (335)
Q Consensus 148 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 176 (335)
..+......+.+.+-++.|+|.+||+...
T Consensus 246 ~qi~ID~SR~IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 246 RQITIDNSRNILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred eeeEeccccceeeeeccCceEEEEEccCC
Confidence 99999988889999999999999998763
No 471
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=92.66 E-value=7.8 Score=35.30 Aligned_cols=236 Identities=14% Similarity=0.079 Sum_probs=118.8
Q ss_pred ceEEEecCCeEEEEEec-CCceeeEEeecCCCCCceEEEEcCC---CCEEEEEECCCc-EEEEeCCCc-----------e
Q 019847 28 NVLAVALGPVLFLWKWE-NGKVKKLLQVPGEDDYPTSVSWSHD---AKTLAVGYMDSK-LQLWDAETS-----------K 91 (335)
Q Consensus 28 ~~~~~~~~~~i~vw~~~-~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~-i~iw~~~~~-----------~ 91 (335)
.+-.|-+...|--|=+. +.+....+.++ .+..|.||..... .+..++|-.++. -++-.+.++ +
T Consensus 41 ~IdiGIS~S~ISsYIi~PTPKLiwsypi~-pt~iV~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~~~~~~~~~~~~~e 119 (670)
T PF10395_consen 41 QIDIGISGSAISSYIIKPTPKLIWSYPIS-PTTIVECCDVLEKSDGKKLYCVGLTERKKFKLLLIERKVGSTEDGTVNSE 119 (670)
T ss_pred eEEEEeccchhhheecCCCcceeEeeccC-cCceEEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEccCccccccccCcc
Confidence 44444455555555442 34443333333 3556777776442 235555534432 343333222 1
Q ss_pred --eEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCee--eEEeecCCC------CEEEEEeecCCCEEEE
Q 019847 92 --LVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNV--TSCIKAHSG------EVCGLKWSNEGNLLAS 161 (335)
Q Consensus 92 --~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~--~~~~~~~~~------~i~~~~~~~~~~~l~~ 161 (335)
...+++ -...+..+.+.+ ++..+++...+|.|.+||....... ......+.. -|.....-....++++
T Consensus 120 ~~~~~~~k-l~~kvv~Ik~~~-~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~ 197 (670)
T PF10395_consen 120 TTNEFELK-LDDKVVGIKFSS-DGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLT 197 (670)
T ss_pred ccceEEEE-cccceEEEEEec-CCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEE
Confidence 111222 357889999997 8999999999999999999322110 111111222 1221111112344544
Q ss_pred EeC-C---CeEEEEEccCC-CcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecC---
Q 019847 162 GGD-D---NVVRIWERSKM-SSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAK--- 233 (335)
Q Consensus 162 ~~~-d---g~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~--- 233 (335)
.+. + -..+++.+... .....+.....+........|.-....+..- .++.|.+|++.+.+..+++..+
T Consensus 198 v~~~~~~k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l----~~~~i~~ysip~f~~~~tI~l~~ii 273 (670)
T PF10395_consen 198 VSQLSNSKLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL----SKKTISSYSIPNFQIQKTISLPSII 273 (670)
T ss_pred EEEcCCCcEEEEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE----eCCEEEEEEcCCceEEEEEEechhh
Confidence 443 2 24667777211 1111121001111122222232222234443 4789999999988887777644
Q ss_pred ----CcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeeccc
Q 019847 234 ----AQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQ 278 (335)
Q Consensus 234 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~ 278 (335)
..+.++.--...+.+++ .++.|++.|+.-...+.++.
T Consensus 274 ~~~~~~~vSl~~~s~nRvLLs--------~~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 274 DKESDDLVSLKPPSPNRVLLS--------VNNKIYLLDLKFESILSEFE 314 (670)
T ss_pred ccccccceEeecCCCCeEEEE--------cCCEEEEEeehhhhhhhhhh
Confidence 23444443333444443 38999999987665555544
No 472
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.57 E-value=9.6 Score=36.11 Aligned_cols=72 Identities=8% Similarity=-0.021 Sum_probs=48.0
Q ss_pred eeeeecCCceEEEecCCeEEEEEecCCceeeEEe-------e--cCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCc
Q 019847 20 KVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQ-------V--PGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETS 90 (335)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~i~vw~~~~~~~~~~~~-------~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 90 (335)
.|++-.++.+++++.+|.+.+|.+.......... + .-+..+|..+...+.-.++.+- .|+.|.++++.+.
T Consensus 20 ~~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~~~~~~ll~l-~dsqi~~~~l~~~ 98 (877)
T KOG2063|consen 20 LCVAAYGNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVCASLELLLIL-SDSQIAVHKLPEL 98 (877)
T ss_pred hHHHHhCCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhcchhcchhee-cCCcceeeecCcc
Confidence 4777788999999999999999987653211111 1 1124667777776655555554 3677888888766
Q ss_pred ee
Q 019847 91 KL 92 (335)
Q Consensus 91 ~~ 92 (335)
+.
T Consensus 99 ~~ 100 (877)
T KOG2063|consen 99 EP 100 (877)
T ss_pred cc
Confidence 55
No 473
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=92.56 E-value=7.4 Score=34.77 Aligned_cols=232 Identities=12% Similarity=0.081 Sum_probs=112.6
Q ss_pred cCCCCEEEEEECCCcEEEEeCCCcee---EeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecC
Q 019847 67 SHDAKTLAVGYMDSKLQLWDAETSKL---VRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAH 143 (335)
Q Consensus 67 ~~~~~~l~~~~~dg~i~iw~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~ 143 (335)
..++..++.+..+|.+....+..... +..+..-.....++.+....+.+|+.|+.-|.=.++.+.............
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~N 298 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLPN 298 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE--
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEeccC
Confidence 34677899999999999888765431 222221144556777764223488888877765555554333222222234
Q ss_pred CCCEEEEEeecC----CC------EEEEEe---CCCeEEEEEccCCCccc--ce--eeccCCCCCeeEEEecCC-CCcEE
Q 019847 144 SGEVCGLKWSNE----GN------LLASGG---DDNVVRIWERSKMSSSK--SL--HRFTDHCGGVKALAWSPH-QVNVL 205 (335)
Q Consensus 144 ~~~i~~~~~~~~----~~------~l~~~~---~dg~i~iwd~~~~~~~~--~~--~~~~~~~~~v~~~~~~~~-~~~~~ 205 (335)
-++|..+++.+. .. .|++++ .+|.+++..-. -... .. ..+.+ ...++.+..... +.+++
T Consensus 299 ~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~G--i~~~~~~~~~~~l~~-v~~iW~l~~~~~~~~~lv 375 (504)
T PF10433_consen 299 WGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNG--IGIEGLELASSELPG-VTGIWTLKLSSSDHSYLV 375 (504)
T ss_dssp --SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEES--BEEE--EEEEEEEST-EEEEEEE-SSSSSBSEEE
T ss_pred cCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEecc--CCceeeeeeccCCCC-ceEEEEeeecCCCceEEE
Confidence 578888888531 11 455554 46788887521 1111 11 11111 233444544332 33444
Q ss_pred EEecCCCCCeEEEEECC---CCceEEEee-----cCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecc
Q 019847 206 ATGGGREDGCIKIWNVQ---KGTCIHGID-----AKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGEL 277 (335)
Q Consensus 206 ~~~~g~~d~~i~i~d~~---~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~ 277 (335)
.+. ...-+++.+. ..+.+..++ ...+-..+....++..+-+. ...|++.+....+.....
T Consensus 376 ~S~----~~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~~~~ivQVt--------~~~i~l~~~~~~~~~~~w 443 (504)
T PF10433_consen 376 LSF----PNETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVGDGRIVQVT--------PKGIRLIDLEDGKLTQEW 443 (504)
T ss_dssp EEE----SSEEEEEEES----SSEEEEE---TS-SSS-EEEEEEETTTEEEEEE--------SSEEEEEESSSTSEEEEE
T ss_pred EEc----CCceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcCCCeEEEEe--------cCeEEEEECCCCeEEEEE
Confidence 443 3445555553 233332221 11111122222233322222 567888888777776665
Q ss_pred cCC-CCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCC
Q 019847 278 QSS-NSRILDLSQSPDGLTVATAGADETIRFWEAFGPSG 315 (335)
Q Consensus 278 ~~~-~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~ 315 (335)
... ...|.+.+... .+++.+-.++.+..+.+.....
T Consensus 444 ~~~~~~~I~~a~~~~--~~v~v~~~~~~~~~~~~~~~~~ 480 (504)
T PF10433_consen 444 KPPAGSIIVAASIND--PQVLVALSGGELVYFELDDNKI 480 (504)
T ss_dssp E-TTS---SEEEESS--SEEEEEE-TTEEEEEEEETTEE
T ss_pred eCCCCCeEEEEEECC--CEEEEEEeCCcEEEEEEECCce
Confidence 433 33466555543 4666677788899998887654
No 474
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=92.53 E-value=4.3 Score=32.86 Aligned_cols=93 Identities=17% Similarity=0.198 Sum_probs=58.6
Q ss_pred CCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEE------CCCcEEEEeCCCceeEeeec----cccccee
Q 019847 35 GPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGY------MDSKLQLWDAETSKLVRNLE----GHHRRVA 104 (335)
Q Consensus 35 ~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~dg~i~iw~~~~~~~~~~~~----~~~~~v~ 104 (335)
...|.+||..+.+....- .+-.+.|+.+.|..+.+.++.|. ....+..||+.+......-. .-.+++.
T Consensus 15 C~~lC~yd~~~~qW~~~g--~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~ 92 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPG--NGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVT 92 (281)
T ss_pred CCEEEEEECCCCEeecCC--CCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEE
Confidence 457999999888764432 23467799999987777777764 34578899988765432222 1247888
Q ss_pred EeeecCCCCCEEE-Eee-CCC--cEEEEe
Q 019847 105 TSSWNHWNGHILT-SGS-KDK--SIINHD 129 (335)
Q Consensus 105 ~~~~~~~~~~~l~-~~~-~dg--~i~~~d 129 (335)
.+.+...+...+. .|. .+| .|..||
T Consensus 93 a~~~~~~d~~~~~~aG~~~~g~~~l~~~d 121 (281)
T PF12768_consen 93 ALTFISNDGSNFWVAGRSANGSTFLMKYD 121 (281)
T ss_pred EEEeeccCCceEEEeceecCCCceEEEEc
Confidence 8888654554444 443 333 345554
No 475
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=92.45 E-value=0.68 Score=24.25 Aligned_cols=30 Identities=27% Similarity=0.489 Sum_probs=21.7
Q ss_pred CCCCeeEEEecCCCCcEEEEecCCCC--CeEEEE
Q 019847 188 HCGGVKALAWSPHQVNVLATGGGRED--GCIKIW 219 (335)
Q Consensus 188 ~~~~v~~~~~~~~~~~~~~~~~g~~d--~~i~i~ 219 (335)
....-....|+|||+.++.++. .+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~--~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSN--RNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEE--CT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEec--CCCCCCcCEE
Confidence 4456678899999999988876 55 666665
No 476
>PLN02193 nitrile-specifier protein
Probab=92.37 E-value=7.5 Score=34.37 Aligned_cols=136 Identities=11% Similarity=0.071 Sum_probs=64.9
Q ss_pred eEEEEEecCCceeeEEeecCCCC--CceEEEEcCCCCEEEEEECC-----CcEEEEeCCCceeEeeecc----cccceeE
Q 019847 37 VLFLWKWENGKVKKLLQVPGEDD--YPTSVSWSHDAKTLAVGYMD-----SKLQLWDAETSKLVRNLEG----HHRRVAT 105 (335)
Q Consensus 37 ~i~vw~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~----~~~~v~~ 105 (335)
.+.+||+.+.+............ ........-++++.+.|+.+ ..+..||+.+.+....-.. ....-.+
T Consensus 194 ~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~ 273 (470)
T PLN02193 194 HLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHS 273 (470)
T ss_pred cEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceE
Confidence 47788887776543211100000 11111122255666777654 3588899887654332111 1111112
Q ss_pred eeecCCCCCEEEEeeCCC-----cEEEEecccCCeeeEEee----cCCCCEEEEEeecCCCEEEEEeCC----CeEEEEE
Q 019847 106 SSWNHWNGHILTSGSKDK-----SIINHDVRVSNNVTSCIK----AHSGEVCGLKWSNEGNLLASGGDD----NVVRIWE 172 (335)
Q Consensus 106 ~~~~~~~~~~l~~~~~dg-----~i~~~d~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~d----g~i~iwd 172 (335)
+.. - ++.+++.|+.++ .+..||+.+......... ...... .++ .-++++++.++.+ ..+.+||
T Consensus 274 ~~~-~-~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~-~~~-~~~gkiyviGG~~g~~~~dv~~yD 349 (470)
T PLN02193 274 MAA-D-EENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGA-GLE-VVQGKVWVVYGFNGCEVDDVHYYD 349 (470)
T ss_pred EEE-E-CCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCc-EEE-EECCcEEEEECCCCCccCceEEEE
Confidence 222 2 667777777653 466778765432111000 001111 122 2256777777655 3588899
Q ss_pred ccCC
Q 019847 173 RSKM 176 (335)
Q Consensus 173 ~~~~ 176 (335)
+.+.
T Consensus 350 ~~t~ 353 (470)
T PLN02193 350 PVQD 353 (470)
T ss_pred CCCC
Confidence 7753
No 477
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=92.33 E-value=5.9 Score=33.11 Aligned_cols=105 Identities=16% Similarity=0.151 Sum_probs=55.2
Q ss_pred ceeEeeecCCCCCEEEEeeCCCcEEEEecccCCe--eeEE----eecCCCCEEEEEeecC---CCEEEEEeC-C------
Q 019847 102 RVATSSWNHWNGHILTSGSKDKSIINHDVRVSNN--VTSC----IKAHSGEVCGLKWSNE---GNLLASGGD-D------ 165 (335)
Q Consensus 102 ~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~--~~~~----~~~~~~~i~~~~~~~~---~~~l~~~~~-d------ 165 (335)
..+.|+|.| +++++++ ...|.|++++.. +.. .... ..........++++|+ ..+|..... .
T Consensus 3 ~P~~~a~~p-dG~l~v~-e~~G~i~~~~~~-g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~ 79 (331)
T PF07995_consen 3 NPRSMAFLP-DGRLLVA-ERSGRIWVVDKD-GSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGD 79 (331)
T ss_dssp SEEEEEEET-TSCEEEE-ETTTEEEEEETT-TEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSS
T ss_pred CceEEEEeC-CCcEEEE-eCCceEEEEeCC-CcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCC
Confidence 467899999 7777664 669999999932 322 1111 1234567899999994 233333332 1
Q ss_pred --CeEEEEEccCC----Ccccce-eeccC---CCCCeeEEEecCCCCcEEEEec
Q 019847 166 --NVVRIWERSKM----SSSKSL-HRFTD---HCGGVKALAWSPHQVNVLATGG 209 (335)
Q Consensus 166 --g~i~iwd~~~~----~~~~~~-~~~~~---~~~~v~~~~~~~~~~~~~~~~~ 209 (335)
..|.-|..... ...+.+ ..... ....-..|.|.|++..++++|.
T Consensus 80 ~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~ 133 (331)
T PF07995_consen 80 NDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGD 133 (331)
T ss_dssp EEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-
T ss_pred cceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCC
Confidence 23444544332 001111 11111 2334567999999965555554
No 478
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=92.30 E-value=1.2 Score=40.24 Aligned_cols=75 Identities=20% Similarity=0.306 Sum_probs=41.9
Q ss_pred cCCCEEEEEeCCCeEEEEEccCCC----cccc-----------eeec--------cCCCCCeeEEEecC----CCCcEEE
Q 019847 154 NEGNLLASGGDDNVVRIWERSKMS----SSKS-----------LHRF--------TDHCGGVKALAWSP----HQVNVLA 206 (335)
Q Consensus 154 ~~~~~l~~~~~dg~i~iwd~~~~~----~~~~-----------~~~~--------~~~~~~v~~~~~~~----~~~~~~~ 206 (335)
++...++.+..||.+......... .... +..+ .........+++++ +...+++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 366788888889988888765411 0000 0000 01123455666666 4444555
Q ss_pred EecCCCCCeEEEEECCCCceEEEee
Q 019847 207 TGGGREDGCIKIWNVQKGTCIHGID 231 (335)
Q Consensus 207 ~~~g~~d~~i~i~d~~~~~~~~~~~ 231 (335)
.+ .|+.+|+||+.+++++....
T Consensus 236 l~---~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 236 LS---RDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp EE---TTSEEEEEETTTTCEEEEEE
T ss_pred Ee---CCCeEEEEECCCCeEEEEec
Confidence 54 79999999999999977654
No 479
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=92.29 E-value=10 Score=35.86 Aligned_cols=114 Identities=7% Similarity=0.100 Sum_probs=73.2
Q ss_pred CCEEEEEeec-CCCEEEEEeCCCeEEEEEccCCC--cccceeeccCCC----------CCeeEEEecCCCCcEEEEecCC
Q 019847 145 GEVCGLKWSN-EGNLLASGGDDNVVRIWERSKMS--SSKSLHRFTDHC----------GGVKALAWSPHQVNVLATGGGR 211 (335)
Q Consensus 145 ~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~----------~~v~~~~~~~~~~~~~~~~~g~ 211 (335)
.+...++|+| +.+.||+....|...||++.... ....+.....+. +.-..+.|.++...++++
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~---- 221 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVC---- 221 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEE----
Confidence 4677899999 66799999999999999992111 111111111111 223478898887777776
Q ss_pred CCCeEEEEECCCCceEE---EeecCCcEeEEEeCCC--CceeeeeeeeeeecCCCeEEEEECCC
Q 019847 212 EDGCIKIWNVQKGTCIH---GIDAKAQICGLEWNRH--HKEILSGHGFSASGDGNKLCLWKYPN 270 (335)
Q Consensus 212 ~d~~i~i~d~~~~~~~~---~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~i~d~~~ 270 (335)
....+.++|+++..... .......|..+.-+|. +..++.. ...|...++..
T Consensus 222 ~r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT--------s~eiiw~~~~~ 277 (765)
T PF10214_consen 222 NRSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT--------SKEIIWLDVKS 277 (765)
T ss_pred cCCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe--------cCeEEEEEccC
Confidence 46889999999876533 2223456888888877 2222221 46777777665
No 480
>PLN02153 epithiospecifier protein
Probab=91.97 E-value=6.7 Score=32.93 Aligned_cols=94 Identities=13% Similarity=0.132 Sum_probs=47.8
Q ss_pred eEEEEEecCCceeeEEeecC-CCC---CceEEEEcCCCCEEEEEECC-----CcEEEEeCCCceeEe--eec----cccc
Q 019847 37 VLFLWKWENGKVKKLLQVPG-EDD---YPTSVSWSHDAKTLAVGYMD-----SKLQLWDAETSKLVR--NLE----GHHR 101 (335)
Q Consensus 37 ~i~vw~~~~~~~~~~~~~~~-~~~---~v~~~~~~~~~~~l~~~~~d-----g~i~iw~~~~~~~~~--~~~----~~~~ 101 (335)
.+.+||..+.+......... ... ....+.+ ++++++.|+.+ ..+.+||..+.+-.. .+. ....
T Consensus 51 ~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R 128 (341)
T PLN02153 51 DLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEAR 128 (341)
T ss_pred cEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCc
Confidence 58888888776544322211 010 1112222 56677777643 357889987754332 121 0111
Q ss_pred ceeEeeecCCCCCEEEEeeCC-----------CcEEEEecccCC
Q 019847 102 RVATSSWNHWNGHILTSGSKD-----------KSIINHDVRVSN 134 (335)
Q Consensus 102 ~v~~~~~~~~~~~~l~~~~~d-----------g~i~~~d~~~~~ 134 (335)
.-.+++.. ++.+++.|+.+ ..+.+||..+..
T Consensus 129 ~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~ 170 (341)
T PLN02153 129 TFHSMASD--ENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGK 170 (341)
T ss_pred eeeEEEEE--CCEEEEECCccCCCccCCCcccceEEEEECCCCe
Confidence 11122222 56777777754 246778887554
No 481
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=91.87 E-value=13 Score=36.13 Aligned_cols=179 Identities=15% Similarity=0.114 Sum_probs=95.6
Q ss_pred CCeEEEEEecCCceeeEEeecCCCCCceEEEEcC---------CCCEEEEEEC---------CCcEEEEeCCC-----ce
Q 019847 35 GPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSH---------DAKTLAVGYM---------DSKLQLWDAET-----SK 91 (335)
Q Consensus 35 ~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~---------~~~~l~~~~~---------dg~i~iw~~~~-----~~ 91 (335)
...|.+.+..+.+.+..+.++. ..-|++++... -..||++|.. .|.+.|+|+-. ++
T Consensus 1003 ~f~i~LisP~sw~vi~~iefq~-~E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgk 1081 (1366)
T KOG1896|consen 1003 QFSIQLISPESWEVIDKIEFQE-NEHVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGK 1081 (1366)
T ss_pred cceeEEecCCccccccccccCc-cceeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccEEEEEEEEecCCCCC
Confidence 3456666666666655555532 23355555421 1358888753 48999999632 22
Q ss_pred e-----Eeee--cccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeC
Q 019847 92 L-----VRNL--EGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGD 164 (335)
Q Consensus 92 ~-----~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 164 (335)
+ ++.+ +..+++|..++=- +|.++.+ ....|.+|+++....+.-.-. -.-++.-....-=.++++.|.-
T Consensus 1082 P~t~~KlKel~~eE~KGtVsavceV--~G~l~~~--~GqKI~v~~l~r~~~ligVaF-iD~~~yv~s~~~vknlIl~gDV 1156 (1366)
T KOG1896|consen 1082 PFTKNKLKELYIEEQKGTVSAVCEV--RGHLLSS--QGQKIIVRKLDRDSELIGVAF-IDLPLYVHSMKVVKNLILAGDV 1156 (1366)
T ss_pred CcccceeeeeehhhcccceEEEEEe--ccEEEEc--cCcEEEEEEeccCCcceeeEE-eccceeEEehhhhhhheehhhh
Confidence 2 2222 2345677766653 4554443 345789999954444332211 1222222222233567777777
Q ss_pred CCeEEEEEccCCCcccceeecc--CCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECC
Q 019847 165 DNVVRIWERSKMSSSKSLHRFT--DHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQ 222 (335)
Q Consensus 165 dg~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~ 222 (335)
-..|.+.-.... ...+..+. ...-.+.+..|--+|..+-...+ +.+++|++|-..
T Consensus 1157 ~ksisfl~fqee--p~rlsL~srd~~~l~v~s~EFLVdg~~L~flvs-Da~rNi~vy~Y~ 1213 (1366)
T KOG1896|consen 1157 MKSISFLGFQEE--PYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVS-DADRNIHVYMYA 1213 (1366)
T ss_pred hhceEEEEEccC--ceEEEEeecCCchhhceeeeeEEcCCeeEEEEE-cCCCcEEEEEeC
Confidence 677777665432 12222222 12334778888877776544432 378999888543
No 482
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=91.65 E-value=7 Score=32.50 Aligned_cols=104 Identities=12% Similarity=0.111 Sum_probs=52.5
Q ss_pred CCCEEEEEECC-----CcEEEEeCCCcee---Eeeecccccce--eEeeecCCCCCEEEEeeC-----CCcEEEEecccC
Q 019847 69 DAKTLAVGYMD-----SKLQLWDAETSKL---VRNLEGHHRRV--ATSSWNHWNGHILTSGSK-----DKSIINHDVRVS 133 (335)
Q Consensus 69 ~~~~l~~~~~d-----g~i~iw~~~~~~~---~~~~~~~~~~v--~~~~~~~~~~~~l~~~~~-----dg~i~~~d~~~~ 133 (335)
++..++.|+.+ ..+..+|+.+.+. ...+..-..+. .+++.. ++.+.+.|+. ...+..||+.+.
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~--~~~iYv~GG~~~~~~~~~v~~yd~~~~ 149 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK--DGTLYVGGGNRNGKPSNKSYLFNLETQ 149 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE--CCEEEEEeCcCCCccCceEEEEcCCCC
Confidence 56666777654 3566777766543 12222111111 122222 6677777774 236788888765
Q ss_pred CeeeEE-eecCCCCEEEEEeecCCCEEEEEeCCC----eEEEEEccC
Q 019847 134 NNVTSC-IKAHSGEVCGLKWSNEGNLLASGGDDN----VVRIWERSK 175 (335)
Q Consensus 134 ~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg----~i~iwd~~~ 175 (335)
...... +. ........+...++++.+.|+.++ .+..||+++
T Consensus 150 ~W~~~~~~p-~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~ 195 (323)
T TIGR03548 150 EWFELPDFP-GEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKK 195 (323)
T ss_pred CeeECCCCC-CCCCCcceEEEECCEEEEEcCCCCccccceEEEecCC
Confidence 432111 11 111112222334667888887654 356788765
No 483
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=91.50 E-value=8.3 Score=33.10 Aligned_cols=145 Identities=12% Similarity=0.149 Sum_probs=80.9
Q ss_pred EEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCc-
Q 019847 147 VCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGT- 225 (335)
Q Consensus 147 i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~- 225 (335)
...+..++++.+++.+.....++-||--. ...+.+. ......+..+.+.+++..++ ++ .+|.+.. ....++
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~-~~W~~~~--~~~~~~l~~v~~~~dg~l~l-~g---~~G~l~~-S~d~G~~ 312 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQ-PYWQPHN--RASARRIQNMGWRADGGLWL-LT---RGGGLYV-SKGTGLT 312 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCC-cceEEec--CCCccceeeeeEcCCCCEEE-Ee---CCceEEE-ecCCCCc
Confidence 34456677887777766433333444211 0012222 22345688999999986444 44 4666544 334443
Q ss_pred ----eEEEeec---CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeeccc---CCCCceeEeEEcCCCCE
Q 019847 226 ----CIHGIDA---KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQ---SSNSRILDLSQSPDGLT 295 (335)
Q Consensus 226 ----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~---~~~~~i~~~~~~~~~~~ 295 (335)
....... ...+..+.+.+++..+++| ..|.+..-. ..++.-...+ .-....+.+.|.++++.
T Consensus 313 ~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-------~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g 384 (398)
T PLN00033 313 EEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-------GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKG 384 (398)
T ss_pred ccccceeecccCCCCcceEEEEEcCCCcEEEEE-------CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCce
Confidence 2233322 2358889999998888876 355555443 4444322222 22356789999887765
Q ss_pred EEEEeCCCcEEEE
Q 019847 296 VATAGADETIRFW 308 (335)
Q Consensus 296 l~~~~~dg~v~iw 308 (335)
+++ +.+|.|.-|
T Consensus 385 ~~~-G~~G~il~~ 396 (398)
T PLN00033 385 FVL-GNDGVLLRY 396 (398)
T ss_pred EEE-eCCcEEEEe
Confidence 554 467877654
No 484
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=91.34 E-value=8.7 Score=33.01 Aligned_cols=160 Identities=16% Similarity=0.100 Sum_probs=84.6
Q ss_pred CCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCC----Cee-EEEecCCCCcEEEEecCCCCCeEEEE
Q 019847 145 GEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCG----GVK-ALAWSPHQVNVLATGGGREDGCIKIW 219 (335)
Q Consensus 145 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~----~v~-~~~~~~~~~~~~~~~~g~~d~~i~i~ 219 (335)
..+..+-..|||+.+..-+. ..+.++++.+.... ..+......+ .|+ .+..-..+..+++.. .||.|.-|
T Consensus 221 ~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~-~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~---~dG~vsQW 295 (733)
T COG4590 221 SDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQ-IRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVH---EDGLVSQW 295 (733)
T ss_pred cchHhhEECCCCCEEEEecC-CeEEEEeecccccc-hhhhhhcCCCchHHHHHHHHHHHhCceeEEEEc---CCCceeee
Confidence 45566777899998877664 67888887643211 1111111111 122 122223344455533 68888776
Q ss_pred -ECCCC-ce----EEEeec-CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCC
Q 019847 220 -NVQKG-TC----IHGIDA-KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPD 292 (335)
Q Consensus 220 -d~~~~-~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~ 292 (335)
|.+.+ .+ ++.++. +.++..+.-..+.+-+ .+-...|++..+.....+.+-.-..- ..+.-+++||+
T Consensus 296 Fdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF------~~l~~~G~L~~f~st~~~~lL~~~~~-~~~~~~~~Sp~ 368 (733)
T COG4590 296 FDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGF------YSLYRNGTLQSFYSTSEKLLLFERAY-QAPQLVAMSPN 368 (733)
T ss_pred eeeecCCCCcceeeeccccCcccceeeccccccceE------EEEcCCCceeeeecccCcceehhhhh-cCcceeeeCcc
Confidence 44432 21 112221 1223222222222222 22256777777765544443222222 24667899999
Q ss_pred CCEEEEEeCCCcEEEEecCCCCCCC
Q 019847 293 GLTVATAGADETIRFWEAFGPSGDE 317 (335)
Q Consensus 293 ~~~l~~~~~dg~v~iw~~~~~~~~~ 317 (335)
+.+|++- +.|.++++.+++...+.
T Consensus 369 ~~~Ll~e-~~gki~~~~l~Nr~Pei 392 (733)
T COG4590 369 QAYLLSE-DQGKIRLAQLENRNPEI 392 (733)
T ss_pred cchheee-cCCceEEEEecCCCCCc
Confidence 9999876 45889999999876554
No 485
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=91.19 E-value=2.8 Score=27.06 Aligned_cols=41 Identities=12% Similarity=0.092 Sum_probs=31.1
Q ss_pred CCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeee
Q 019847 211 REDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSG 251 (335)
Q Consensus 211 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (335)
..+|.+.-||..+++....++.=.-.+.++.++++..++.+
T Consensus 34 ~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 34 RPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVA 74 (89)
T ss_dssp ---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEE
T ss_pred CCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEE
Confidence 36789999999998876666666678899999999988775
No 486
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=90.96 E-value=8.4 Score=33.47 Aligned_cols=31 Identities=13% Similarity=0.305 Sum_probs=25.3
Q ss_pred CCEEEEEeecCCCEEEEEeCCCeEEEEEccC
Q 019847 145 GEVCGLKWSNEGNLLASGGDDNVVRIWERSK 175 (335)
Q Consensus 145 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 175 (335)
..|.+++..+..+.+++.+.+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 3499999999889999999999999999975
No 487
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=90.86 E-value=9.7 Score=32.71 Aligned_cols=144 Identities=10% Similarity=0.182 Sum_probs=78.6
Q ss_pred eeecCCCCCEEEEeeCCCcEEEEecccCCee-eEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCccc--ce
Q 019847 106 SSWNHWNGHILTSGSKDKSIINHDVRVSNNV-TSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSK--SL 182 (335)
Q Consensus 106 ~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~ 182 (335)
+...+ ++.+++.+..-..++-||- +... ..........++.+.+.+++..++++ .+|.+..=+ ..+.... .+
T Consensus 244 v~~~~-dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~S~-d~G~~~~~~~f 318 (398)
T PLN00033 244 VNRSP-DGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYVSK-GTGLTEEDFDF 318 (398)
T ss_pred EEEcC-CCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEEec-CCCCcccccce
Confidence 34444 5555555544333333442 2111 11222345678899999998877766 466654422 2221111 12
Q ss_pred eeccC--CCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEee----cCCcEeEEEeCCCCceeeeeeeeee
Q 019847 183 HRFTD--HCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGID----AKAQICGLEWNRHHKEILSGHGFSA 256 (335)
Q Consensus 183 ~~~~~--~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (335)
..... ....+..+.|.+++ .+++++ ..|.+.... ..|+.-...+ ...+...+.|.++++.++.|
T Consensus 319 ~~~~~~~~~~~l~~v~~~~d~-~~~a~G---~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G----- 388 (398)
T PLN00033 319 EEADIKSRGFGILDVGYRSKK-EAWAAG---GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG----- 388 (398)
T ss_pred eecccCCCCcceEEEEEcCCC-cEEEEE---CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-----
Confidence 22211 22348889999877 477776 577666653 4454433322 23568899998888877775
Q ss_pred ecCCCeEEEE
Q 019847 257 SGDGNKLCLW 266 (335)
Q Consensus 257 ~~~~~~i~i~ 266 (335)
.+|.|.-|
T Consensus 389 --~~G~il~~ 396 (398)
T PLN00033 389 --NDGVLLRY 396 (398)
T ss_pred --CCcEEEEe
Confidence 46666544
No 488
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=90.80 E-value=5.9 Score=30.14 Aligned_cols=181 Identities=14% Similarity=0.140 Sum_probs=92.7
Q ss_pred ceeeeecCCceEEEe---cCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEE-EEECCCcEEEEeCCCceeEe
Q 019847 19 SKVIDWGRNNVLAVA---LGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLA-VGYMDSKLQLWDAETSKLVR 94 (335)
Q Consensus 19 ~~~~~~~~~~~~~~~---~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iw~~~~~~~~~ 94 (335)
...+...++.++... ....|++||+.+++......+.. ..+..=-...-+.++. ..-.+|.-..+|..+.+.+.
T Consensus 48 TQGL~~~~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~--~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg 125 (262)
T COG3823 48 TQGLEYLDGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAP--DTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELG 125 (262)
T ss_pred hcceeeeCCEEEEeccccccceeEEEeccCceEEEEeecCC--ccccccceeeccceEEEEEeccceeEEEChHHhhhhc
Confidence 334445555555443 35689999999998766655541 1222211222233332 23368888999998888777
Q ss_pred eecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeec-CC---CCEEEEEeecCCCEEEEEe-------
Q 019847 95 NLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKA-HS---GEVCGLKWSNEGNLLASGG------- 163 (335)
Q Consensus 95 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~-~~---~~i~~~~~~~~~~~l~~~~------- 163 (335)
.+. -++.=+.++. ++..|+.+....+++.-|.++-......... .. ..++.+.|- +|...|-.-
T Consensus 126 ~~~-y~GeGWgLt~---d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~r 200 (262)
T COG3823 126 RFS-YEGEGWGLTS---DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIAR 200 (262)
T ss_pred ccc-cCCcceeeec---CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEE
Confidence 665 3344455555 4555666666667777776543321111100 11 112222221 222222221
Q ss_pred ---CCCeEEEE-EccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEe
Q 019847 164 ---DDNVVRIW-ERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATG 208 (335)
Q Consensus 164 ---~dg~i~iw-d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 208 (335)
..|.|.-| |+... ...+..-..+..-.+.+++.|++..++.+|
T Consensus 201 I~p~sGrV~~widlS~L--~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 201 IDPDSGRVVAWIDLSGL--LKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EcCCCCcEEEEEEccCC--chhcCccccccccccceeecCcCCeEEEec
Confidence 22333322 33221 111222233445578899999988888876
No 489
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=90.73 E-value=9.1 Score=32.17 Aligned_cols=94 Identities=15% Similarity=0.171 Sum_probs=44.0
Q ss_pred cCCceEEEec--CCeEEEEEec--CCceeeEEeecC-CCCCceEEEEcCCCCEEEEEECC-----------CcEEEEeCC
Q 019847 25 GRNNVLAVAL--GPVLFLWKWE--NGKVKKLLQVPG-EDDYPTSVSWSHDAKTLAVGYMD-----------SKLQLWDAE 88 (335)
Q Consensus 25 ~~~~~~~~~~--~~~i~vw~~~--~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d-----------g~i~iw~~~ 88 (335)
-++.+++++. ...+..+|++ +.+..+...++. ....... ..-+++..+.|+.+ ..+..||..
T Consensus 16 ~~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~--~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~ 93 (346)
T TIGR03547 16 IGDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRNQAVA--AAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPK 93 (346)
T ss_pred ECCEEEEEccccCCeeEEEECCCCCCCceECCCCCCCCcccceE--EEECCEEEEEeCCCCCCCCCcceecccEEEEECC
Confidence 3455555432 2466777763 233333333321 1111122 22367777777653 247778887
Q ss_pred CceeEeeecccccc---eeEeeecCCCCCEEEEeeCC
Q 019847 89 TSKLVRNLEGHHRR---VATSSWNHWNGHILTSGSKD 122 (335)
Q Consensus 89 ~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~d 122 (335)
+.+-...-...... ...+.. - ++++.+.|+.+
T Consensus 94 ~~~W~~~~~~~p~~~~~~~~~~~-~-~g~IYviGG~~ 128 (346)
T TIGR03547 94 KNSWQKLDTRSPVGLLGASGFSL-H-NGQAYFTGGVN 128 (346)
T ss_pred CCEEecCCCCCCCcccceeEEEE-e-CCEEEEEcCcC
Confidence 66543321111111 111211 2 77888888764
No 490
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=90.67 E-value=5.8 Score=36.72 Aligned_cols=146 Identities=13% Similarity=0.149 Sum_probs=86.9
Q ss_pred CEEEEEECCCcEEEEeCCCcee----EeeecccccceeEeeecCCCCCEEEEeeCCCcEEE--------EecccCCeeeE
Q 019847 71 KTLAVGYMDSKLQLWDAETSKL----VRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIIN--------HDVRVSNNVTS 138 (335)
Q Consensus 71 ~~l~~~~~dg~i~iw~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~--------~d~~~~~~~~~ 138 (335)
..+..|+.++.+.++.-..+.. ..........+.++.+++ ..+..|.-||++-. ||.+ ...
T Consensus 548 PTic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss---~Slgagl~dgt~a~y~rap~gSwd~e----p~~ 620 (925)
T KOG3522|consen 548 PTICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSS---GSLGAGLIDGTLAVYGRAPSGSWDGE----PNI 620 (925)
T ss_pred CcccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhccc---cccccCccCCccccccCCCCCCCCCC----Ccc
Confidence 3577888999999997652221 111223345666666653 34555555665544 4433 122
Q ss_pred EeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEE
Q 019847 139 CIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKI 218 (335)
Q Consensus 139 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i 218 (335)
.+.....++.+.++..| ++.++.+|.|.++...+............|...|+++....++- .++.. ....+++
T Consensus 621 ~~~~g~lPvrsla~~ed---~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gV-wvafa---sG~~~rl 693 (925)
T KOG3522|consen 621 SIPTGSLPVRSLAFQED---FVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGV-WVAFA---SGDEERL 693 (925)
T ss_pred ccccCCccccchhhhhc---eeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCce-EEEEc---CCCEEEE
Confidence 22334567888887755 66677899999999776544333444445667799999887773 33333 3456666
Q ss_pred EECCCCceEEEe
Q 019847 219 WNVQKGTCIHGI 230 (335)
Q Consensus 219 ~d~~~~~~~~~~ 230 (335)
++.++-.....+
T Consensus 694 fhtetl~hlqd~ 705 (925)
T KOG3522|consen 694 FHTETLWHLQDS 705 (925)
T ss_pred ecccccCCcccc
Confidence 666554444433
No 491
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=90.45 E-value=10 Score=32.35 Aligned_cols=95 Identities=17% Similarity=0.199 Sum_probs=43.1
Q ss_pred CCceEE-Eec-CCeEEEEEecC--CceeeEEeecCCCCCceEEEEcCCCCEEEEEECC-----------CcEEEEeCCCc
Q 019847 26 RNNVLA-VAL-GPVLFLWKWEN--GKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMD-----------SKLQLWDAETS 90 (335)
Q Consensus 26 ~~~~~~-~~~-~~~i~vw~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----------g~i~iw~~~~~ 90 (335)
++.+++ ++. +..+.++|++. .+......++.. .........-+++..+.|+.+ ..+..||..+.
T Consensus 38 ~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~-~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n 116 (376)
T PRK14131 38 NNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGG-PREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTN 116 (376)
T ss_pred CCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCC-CcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCC
Confidence 444444 443 35667777753 333332222211 111111222356677777643 24778888765
Q ss_pred eeEeeecccccce--eEeeecCCCCCEEEEeeCC
Q 019847 91 KLVRNLEGHHRRV--ATSSWNHWNGHILTSGSKD 122 (335)
Q Consensus 91 ~~~~~~~~~~~~v--~~~~~~~~~~~~l~~~~~d 122 (335)
+-...-....... .+..... ++.+.+.|+.+
T Consensus 117 ~W~~~~~~~p~~~~~~~~~~~~-~~~IYv~GG~~ 149 (376)
T PRK14131 117 SWQKLDTRSPVGLAGHVAVSLH-NGKAYITGGVN 149 (376)
T ss_pred EEEeCCCCCCCcccceEEEEee-CCEEEEECCCC
Confidence 5333211111111 1111112 67888888754
No 492
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=90.26 E-value=11 Score=32.17 Aligned_cols=203 Identities=18% Similarity=0.111 Sum_probs=101.3
Q ss_pred eecCCceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccc-c
Q 019847 23 DWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHH-R 101 (335)
Q Consensus 23 ~~~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-~ 101 (335)
...++.+++...+|.|.-.|.++++.+-...+......+..-.+..+|+ ++.++.+|.++.+|..+|+.+....... .
T Consensus 65 ~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~ 143 (370)
T COG1520 65 ADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSP 143 (370)
T ss_pred EeeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCe
Confidence 3445667777788888888888887543222221111222222333665 7888889999999998999888777554 1
Q ss_pred ceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecC--CCCEEEEEeecCCCEEEEEeC--CCeEEEEEccCCC
Q 019847 102 RVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAH--SGEVCGLKWSNEGNLLASGGD--DNVVRIWERSKMS 177 (335)
Q Consensus 102 ~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~ 177 (335)
.+..-... ....+..++.++.+...|..++...-.....- ...+..-....++ .+..+.. ++.+.-.|.+.+.
T Consensus 144 ~~~~~~v~--~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~vy~~~~~~~~~~~a~~~~~G~ 220 (370)
T COG1520 144 YYASPPVV--GDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASG-TVYVGSDGYDGILYALNAEDGT 220 (370)
T ss_pred EEecCcEE--cCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecc-eEEEecCCCcceEEEEEccCCc
Confidence 11111111 23344444467888777777665433321110 1111100001122 3444444 4555556654433
Q ss_pred ccccee--eccCCCC-----CeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecC
Q 019847 178 SSKSLH--RFTDHCG-----GVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAK 233 (335)
Q Consensus 178 ~~~~~~--~~~~~~~-----~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~ 233 (335)
..-..+ ...+... .+..-...-++ .+...+ .++.+...|..+++.+-.++..
T Consensus 221 ~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~-~~~~~~---~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 221 LKWSQKVSQTIGRTAISTTPAVDGGPVYVDG-GVYAGS---YGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred EeeeeeeecccCcccccccccccCceEEECC-cEEEEe---cCCeEEEEEcCCCceEEEEecc
Confidence 211110 0001100 00000000111 122222 5788999999999998888764
No 493
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=89.61 E-value=12 Score=31.77 Aligned_cols=195 Identities=13% Similarity=0.165 Sum_probs=107.3
Q ss_pred CceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEc----CCCCE--EEEEE-CC---CcEEEEeCC--CceeEe
Q 019847 27 NNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWS----HDAKT--LAVGY-MD---SKLQLWDAE--TSKLVR 94 (335)
Q Consensus 27 ~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~--l~~~~-~d---g~i~iw~~~--~~~~~~ 94 (335)
..++....++-+.+||++..+. +.+. ...++.+..- -.|+. |++++ .+ ..|++|.+. ++. +.
T Consensus 69 SlIigTdK~~GL~VYdL~Gk~l-q~~~----~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~-L~ 142 (381)
T PF02333_consen 69 SLIIGTDKKGGLYVYDLDGKEL-QSLP----VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE-LT 142 (381)
T ss_dssp -EEEEEETTTEEEEEETTS-EE-EEE-----SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE-EE
T ss_pred ceEEEEeCCCCEEEEcCCCcEE-Eeec----CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc-ce
Confidence 3466666888999999976654 3222 1234433332 13433 44444 22 469999775 343 33
Q ss_pred eecc-------cccceeEeee--cCCCCC-EEEEeeCCCcEEEEecccCC------eeeEEeecCCCCEEEEEeecCCCE
Q 019847 95 NLEG-------HHRRVATSSW--NHWNGH-ILTSGSKDKSIINHDVRVSN------NVTSCIKAHSGEVCGLKWSNEGNL 158 (335)
Q Consensus 95 ~~~~-------~~~~v~~~~~--~~~~~~-~l~~~~~dg~i~~~d~~~~~------~~~~~~~~~~~~i~~~~~~~~~~~ 158 (335)
.+.. ....+..++. ++.++. +++....+|.+..|.+.... .+.+.+. -...+..+........
T Consensus 143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~-~~sQ~EGCVVDDe~g~ 221 (381)
T PF02333_consen 143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFK-VGSQPEGCVVDDETGR 221 (381)
T ss_dssp E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTTTE
T ss_pred EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEec-CCCcceEEEEecccCC
Confidence 3321 1123555665 343443 66677889999988886321 2334443 3457888888888889
Q ss_pred EEEEeCCCeEEEEEccCCCc--ccceeeccC--CCCCeeEEEec--CCC-CcEEEEecCCCCCeEEEEECCCC-ceEEEe
Q 019847 159 LASGGDDNVVRIWERSKMSS--SKSLHRFTD--HCGGVKALAWS--PHQ-VNVLATGGGREDGCIKIWNVQKG-TCIHGI 230 (335)
Q Consensus 159 l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~--~~~~v~~~~~~--~~~-~~~~~~~~g~~d~~i~i~d~~~~-~~~~~~ 230 (335)
|..+-++.-|.-|+.+.... ...+....+ ....|..++.- +++ .+|+++.- -+++..+|+.+.. ..+..+
T Consensus 222 LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQ--G~~sf~Vy~r~~~~~~~g~f 299 (381)
T PF02333_consen 222 LYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQ--GDNSFAVYDREGPNAYVGSF 299 (381)
T ss_dssp EEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEG--GGTEEEEEESSTT--EEEEE
T ss_pred EEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcC--CCCeEEEEecCCCCcccceE
Confidence 99999998888888763221 222322222 34567777764 333 36777765 6789999997642 334443
No 494
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=89.58 E-value=12 Score=31.87 Aligned_cols=176 Identities=15% Similarity=0.211 Sum_probs=95.5
Q ss_pred cEEEEeCCCceeEeeecc--cccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeE--Ee--ecCCCCEEEEEeec
Q 019847 81 KLQLWDAETSKLVRNLEG--HHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTS--CI--KAHSGEVCGLKWSN 154 (335)
Q Consensus 81 ~i~iw~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~--~~--~~~~~~i~~~~~~~ 154 (335)
.++|.| ++...+..+++ ....|.++.|.. +--++++--.-.-+.+.|+.+.+.+.. .+ .+.+. -.+|
T Consensus 407 ~vYilD-e~lnvvGkltGl~~gERIYAvRf~g-dv~yiVTfrqtDPlfviDlsNPenPkvlGeLKIPGfS~-----YLHp 479 (603)
T COG4880 407 AVYILD-ENLNVVGKLTGLAPGERIYAVRFVG-DVLYIVTFRQTDPLFVIDLSNPENPKVLGELKIPGFSE-----YLHP 479 (603)
T ss_pred eeEEEc-CCCcEEEEEeccCCCceEEEEEEeC-ceEEEEEEeccCceEEEEcCCCCCCceeEEEecCCchh-----hccc
Confidence 456665 34556666654 456899999976 666667766667788889876654321 11 12111 2244
Q ss_pred --CCCEEEEEeCCCe--EEEEEccCCCcccceeeccCC--CC----CeeEEEecCCCCcEEEEecCCCCCeEEEEECCCC
Q 019847 155 --EGNLLASGGDDNV--VRIWERSKMSSSKSLHRFTDH--CG----GVKALAWSPHQVNVLATGGGREDGCIKIWNVQKG 224 (335)
Q Consensus 155 --~~~~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~--~~----~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~ 224 (335)
++++|-.|-.+|. |.+||+.+....+......-. -+ .-.+..|.|....++.-+. ..|. ++.++.|
T Consensus 480 igen~~lGvG~~~g~vKiSLFdiSdl~~PkEv~~y~l~~~wspvf~dhHAFl~d~~~~ifFlPay--~~gy--if~iedg 555 (603)
T COG4880 480 IGENRLLGVGAYQGGVKISLFDISDLAAPKEVSNYTLSNAWSPVFYDHHAFLYDPEAEIFFLPAY--LGGY--IFFIEDG 555 (603)
T ss_pred cCCCcEEEeecccCCceEEEEeccCCCCchhhhheehhhhcchhhhccceeecCCcccEEEeccc--CccE--EEEEecC
Confidence 5667778877775 557888776554443322110 01 1124556666554444443 4444 4444555
Q ss_pred ceEE-EeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeec
Q 019847 225 TCIH-GIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGE 276 (335)
Q Consensus 225 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~ 276 (335)
..+. .-++..+....-|..+.-+++. ...+.++|-.+.+.+..
T Consensus 556 ~kl~k~~e~k~na~RA~fi~dylY~vg---------~~ev~~ldenswe~Vge 599 (603)
T COG4880 556 SKLRKRAERKLNADRAFFIKDYLYLVG---------GNEVWKLDENSWEVVGE 599 (603)
T ss_pred ceeeehhhhcccceeeEEecceEEEec---------cceeEEeccchHhhhhh
Confidence 3322 2233444444555555555543 35677777666655443
No 495
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=89.33 E-value=20 Score=33.97 Aligned_cols=187 Identities=10% Similarity=0.094 Sum_probs=103.3
Q ss_pred CEEEEeeCCCcEEEEecccCCeeeEEe-------ecCCCCEEEEEe--ecCCCEEEEEeCC---CeEEEEEccCCCc---
Q 019847 114 HILTSGSKDKSIINHDVRVSNNVTSCI-------KAHSGEVCGLKW--SNEGNLLASGGDD---NVVRIWERSKMSS--- 178 (335)
Q Consensus 114 ~~l~~~~~dg~i~~~d~~~~~~~~~~~-------~~~~~~i~~~~~--~~~~~~l~~~~~d---g~i~iwd~~~~~~--- 178 (335)
.-+++-..+|.+++|=.+...+....- ..-...++..++ ..+|+.++.++.+ +.|++|.+.-.-.
T Consensus 63 ~A~i~Vt~nG~l~l~yQ~~~~~~~~~s~~el~s~~~s~~~ithAsi~~~~~g~~ili~t~s~~s~~l~~yrv~I~W~~~~ 142 (753)
T PF11635_consen 63 SACIAVTRNGLLKLWYQKPDGQWNESSTAELESLGSSDDLITHASIAPSDNGKSILIATYSSLSKQLRFYRVQIDWNAKP 142 (753)
T ss_pred eEEEEEecCCeEEEEEEcCCCccceeehhhhccccccccceeeceeeecCCCCEEEEEEccccCCceEEEEEEEeccCcC
Confidence 456666788999999874333322221 113344554444 4567666655555 7788876431100
Q ss_pred ----c---ccee--ec-----c--C-----------CCCCeeEEEecC------CCCcEEEEecCCC--CCeEEEEECCC
Q 019847 179 ----S---KSLH--RF-----T--D-----------HCGGVKALAWSP------HQVNVLATGGGRE--DGCIKIWNVQK 223 (335)
Q Consensus 179 ----~---~~~~--~~-----~--~-----------~~~~v~~~~~~~------~~~~~~~~~~g~~--d~~i~i~d~~~ 223 (335)
. ..+. .. . . .-..++.+.|-+ ..+.++++.+... ...|.-|.++.
T Consensus 143 ~~~d~q~~PSl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI~RweL~~ 222 (753)
T PF11635_consen 143 QQIDPQKLPSLFLSHIADETPKDVDPTGWGDPSPDNSMYQLTHLEILSPTPDKDSAPEILIVYSSPNTPSSIIERWELRE 222 (753)
T ss_pred ccCCCCcCCeEEEEeccccccccccCccccccCcccccccceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEEEEEEEEc
Confidence 0 0000 00 0 0 112455666654 2334555543222 45799998865
Q ss_pred Cc-eEE--------------------------EeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeec
Q 019847 224 GT-CIH--------------------------GIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGE 276 (335)
Q Consensus 224 ~~-~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~ 276 (335)
.. .++ .+..+..|.++....-+..++.. -.||+|.++|-.+.+.+..
T Consensus 223 ~~~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~~V~si~~~~~~~~v~~~------~~DGsI~~~dr~t~~~~~~ 296 (753)
T PF11635_consen 223 EQQPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNKRVVSITSPELDIVVAFA------FSDGSIEFRDRNTMKELNE 296 (753)
T ss_pred cCcccchhhhhcCCCCcCCCCCCCceeEEEecccccCCeEEEEEecccCcEEEEE------EcCCeEEEEecCcchhhcc
Confidence 32 111 01123346666666666655544 5699999999888755544
Q ss_pred c----cC---------------CCCceeEeEEcCCCCEEEEEeCCCcEE
Q 019847 277 L----QS---------------SNSRILDLSQSPDGLTVATAGADETIR 306 (335)
Q Consensus 277 ~----~~---------------~~~~i~~~~~~~~~~~l~~~~~dg~v~ 306 (335)
. .. +...+..++|||.+..++.-..+|.+.
T Consensus 297 ~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~~~~~~~ 345 (753)
T PF11635_consen 297 TRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQIDEDGKTK 345 (753)
T ss_pred cccccCCccccccccccccccccCCCCceEEECcccceEEEEecCCCce
Confidence 3 11 011334588999999999999999966
No 496
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=89.12 E-value=13 Score=31.61 Aligned_cols=203 Identities=14% Similarity=0.078 Sum_probs=101.5
Q ss_pred CCCEEEEEECCCcEEEEeCCCceeEeeecccc--cceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCC-
Q 019847 69 DAKTLAVGYMDSKLQLWDAETSKLVRNLEGHH--RRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSG- 145 (335)
Q Consensus 69 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~- 145 (335)
++ .+.++..+|.|.-.|.++++.+....... ..+..-.... +++ ++.++.++.+..+|.+++...-.... ...
T Consensus 68 dg-~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~-~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~-~~~~ 143 (370)
T COG1520 68 DG-TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGS-DGK-IYVGSWDGKLYALDASTGTLVWSRNV-GGSP 143 (370)
T ss_pred CC-eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEe-CCe-EEEecccceEEEEECCCCcEEEEEec-CCCe
Confidence 44 45566789999999999988665433221 2232323332 344 77888899888888866665433221 220
Q ss_pred CEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCC--CCeEEEEECCC
Q 019847 146 EVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGRE--DGCIKIWNVQK 223 (335)
Q Consensus 146 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~--d~~i~i~d~~~ 223 (335)
.+..-..-.++ .+..++.++.+.-.|..++...-.......-...+..-....++ .+++.. . ++.+.-.|.++
T Consensus 144 ~~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~vy~~~---~~~~~~~~a~~~~~ 218 (370)
T COG1520 144 YYASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASG-TVYVGS---DGYDGILYALNAED 218 (370)
T ss_pred EEecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecc-eEEEec---CCCcceEEEEEccC
Confidence 11111111132 33333356777777655432211111100000001100012222 233322 3 55788888888
Q ss_pred CceEEEeecCCcEeEE----EeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCC
Q 019847 224 GTCIHGIDAKAQICGL----EWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSS 280 (335)
Q Consensus 224 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~ 280 (335)
|......+....+..- .-.-.+..+.++.....++.++.+.-.|..+++.+-.+...
T Consensus 219 G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 219 GTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred CcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 8887765432222111 11122333333333344566777888888888888776653
No 497
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=89.06 E-value=21 Score=33.84 Aligned_cols=188 Identities=16% Similarity=0.167 Sum_probs=103.4
Q ss_pred CceEEEecCCeEEEEEec-CCceeeEE--e---ecCCCCCceEEEEc--CCCCEEEEEECC---CcEEEEeCC--Cc---
Q 019847 27 NNVLAVALGPVLFLWKWE-NGKVKKLL--Q---VPGEDDYPTSVSWS--HDAKTLAVGYMD---SKLQLWDAE--TS--- 90 (335)
Q Consensus 27 ~~~~~~~~~~~i~vw~~~-~~~~~~~~--~---~~~~~~~v~~~~~~--~~~~~l~~~~~d---g~i~iw~~~--~~--- 90 (335)
..++++...|.+++|=.+ +++..... . +..-...|+..++. .+|+.++.++.+ +.|++|.+. -+
T Consensus 63 ~A~i~Vt~nG~l~l~yQ~~~~~~~~~s~~el~s~~~s~~~ithAsi~~~~~g~~ili~t~s~~s~~l~~yrv~I~W~~~~ 142 (753)
T PF11635_consen 63 SACIAVTRNGLLKLWYQKPDGQWNESSTAELESLGSSDDLITHASIAPSDNGKSILIATYSSLSKQLRFYRVQIDWNAKP 142 (753)
T ss_pred eEEEEEecCCeEEEEEEcCCCccceeehhhhccccccccceeeceeeecCCCCEEEEEEccccCCceEEEEEEEeccCcC
Confidence 358888999999999873 33332222 1 11234556665555 566666555544 788888642 01
Q ss_pred -----e--eEeeec----c-----------------cccceeEeeecC------CCCCEEEEeeC----CCcEEEEeccc
Q 019847 91 -----K--LVRNLE----G-----------------HHRRVATSSWNH------WNGHILTSGSK----DKSIINHDVRV 132 (335)
Q Consensus 91 -----~--~~~~~~----~-----------------~~~~v~~~~~~~------~~~~~l~~~~~----dg~i~~~d~~~ 132 (335)
+ +.-.+. . .-..++.+.|.+ ....++++.+. ...|.-|.++.
T Consensus 143 ~~~d~q~~PSl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI~RweL~~ 222 (753)
T PF11635_consen 143 QQIDPQKLPSLFLSHIADETPKDVDPTGWGDPSPDNSMYQLTHLEILSPTPDKDSAPEILIVYSSPNTPSSIIERWELRE 222 (753)
T ss_pred ccCCCCcCCeEEEEeccccccccccCccccccCcccccccceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEEEEEEEEc
Confidence 0 000000 0 112566666654 12345555443 34688998865
Q ss_pred CCeeeEEe-------------------------ecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccce-----
Q 019847 133 SNNVTSCI-------------------------KAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSL----- 182 (335)
Q Consensus 133 ~~~~~~~~-------------------------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----- 182 (335)
....+... ....+.|.++....-+.+++..-.||+|.++|-.+.+.....
T Consensus 223 ~~~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~ 302 (753)
T PF11635_consen 223 EQQPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGE 302 (753)
T ss_pred cCcccchhhhhcCCCCcCCCCCCCceeEEEecccccCCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccC
Confidence 43211110 012355677777777788999999999999997654221111
Q ss_pred -----eecc------CCCCCeeEEEecCCCCcEEEEecCCCCCeEE
Q 019847 183 -----HRFT------DHCGGVKALAWSPHQVNVLATGGGREDGCIK 217 (335)
Q Consensus 183 -----~~~~------~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~ 217 (335)
..+. ..-.++..++|||.+..++... .+|.+.
T Consensus 303 ~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~---~~~~~~ 345 (753)
T PF11635_consen 303 PPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQID---EDGKTK 345 (753)
T ss_pred CccccccccccccccccCCCCceEEECcccceEEEEe---cCCCce
Confidence 0000 0111344578999887666655 466654
No 498
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=88.95 E-value=21 Score=33.86 Aligned_cols=161 Identities=11% Similarity=0.108 Sum_probs=99.8
Q ss_pred CCCCceEEEEc---C----CCCEEEEEECCCcEEEEeCCCc---------------eeEeeecc---cccceeEeeecCC
Q 019847 57 EDDYPTSVSWS---H----DAKTLAVGYMDSKLQLWDAETS---------------KLVRNLEG---HHRRVATSSWNHW 111 (335)
Q Consensus 57 ~~~~v~~~~~~---~----~~~~l~~~~~dg~i~iw~~~~~---------------~~~~~~~~---~~~~v~~~~~~~~ 111 (335)
-..+|..|+|. . ..++|++= ....+.|+...-. .++..+.. ...+...++|+|.
T Consensus 78 ~~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~ 156 (765)
T PF10214_consen 78 DGSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW 156 (765)
T ss_pred CCCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence 46789999998 2 12355544 4557788772211 22333331 2357889999998
Q ss_pred CCCEEEEeeCCCcEEEEecccCC----eeeEEeecCCC----------CEEEEEeecCCCEEEEEeCCCeEEEEEccCCC
Q 019847 112 NGHILTSGSKDKSIINHDVRVSN----NVTSCIKAHSG----------EVCGLKWSNEGNLLASGGDDNVVRIWERSKMS 177 (335)
Q Consensus 112 ~~~~l~~~~~dg~i~~~d~~~~~----~~~~~~~~~~~----------~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 177 (335)
+...||.....|.-.+|++.... ........+.+ .-..+.|.++.+.|+.++ ...+.++|++...
T Consensus 157 ~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~-r~~l~~~d~~~~~ 235 (765)
T PF10214_consen 157 DQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN-RSKLMLIDFESNW 235 (765)
T ss_pred ccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc-CCceEEEECCCCC
Confidence 99999999999999999992111 11111111222 234788988888888877 4578999988654
Q ss_pred cccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCC
Q 019847 178 SSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQK 223 (335)
Q Consensus 178 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~ 223 (335)
....+. .......|..+.-+|.....+..- ....|...++..
T Consensus 236 ~~~~l~-~~~~~~~IlDv~~~~~~~~~~FiL---Ts~eiiw~~~~~ 277 (765)
T PF10214_consen 236 QTEYLV-TAKTWSWILDVKRSPDNPSHVFIL---TSKEIIWLDVKS 277 (765)
T ss_pred ccchhc-cCCChhheeeEEecCCccceEEEE---ecCeEEEEEccC
Confidence 423222 223456788888888733222222 257788888776
No 499
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=88.29 E-value=2.4 Score=22.09 Aligned_cols=29 Identities=17% Similarity=0.304 Sum_probs=19.4
Q ss_pred CCCCceEEEEcCCCCEEEEEEC-C--CcEEEE
Q 019847 57 EDDYPTSVSWSHDAKTLAVGYM-D--SKLQLW 85 (335)
Q Consensus 57 ~~~~v~~~~~~~~~~~l~~~~~-d--g~i~iw 85 (335)
....-....|+|||++|+..+. + |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3445678899999999887664 3 555554
No 500
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=88.20 E-value=21 Score=32.77 Aligned_cols=167 Identities=15% Similarity=0.174 Sum_probs=86.7
Q ss_pred CCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEe--eecc-cccceeEeeecC-----CCCCEEEEeeC-CC---cE
Q 019847 58 DDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVR--NLEG-HHRRVATSSWNH-----WNGHILTSGSK-DK---SI 125 (335)
Q Consensus 58 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~--~~~~-~~~~v~~~~~~~-----~~~~~l~~~~~-dg---~i 125 (335)
.+.|..+.|.++++.+++...+|.|.+||...+.... .++. +...+.--.|.+ ....++++-+. ++ ..
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y 208 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY 208 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence 5678999999999999999999999999993322211 2221 111111112222 12345544444 32 46
Q ss_pred EEEecccCC-eeeEEe--ecCCCCEEEEEeec-CCCEEEEEeCCCeEEEEEccCCCcccceeec--cCCC-CCeeEEEec
Q 019847 126 INHDVRVSN-NVTSCI--KAHSGEVCGLKWSN-EGNLLASGGDDNVVRIWERSKMSSSKSLHRF--TDHC-GGVKALAWS 198 (335)
Q Consensus 126 ~~~d~~~~~-~~~~~~--~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~-~~v~~~~~~ 198 (335)
+++.+.... .+...- ..+........|.- +|.+..- .++.|.+|++-..+..+.+... -... ..+.++. .
T Consensus 209 kL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~-~ 285 (670)
T PF10395_consen 209 KLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLK-P 285 (670)
T ss_pred EEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEee-c
Confidence 677772111 111110 11222222233333 4544333 5778999998665433332221 1111 2333333 2
Q ss_pred CCCCcEEEEecCCCCCeEEEEECCCCceEEEee
Q 019847 199 PHQVNVLATGGGREDGCIKIWNVQKGTCIHGID 231 (335)
Q Consensus 199 ~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~ 231 (335)
|...+++.+ .++.|++.|+.-...+..++
T Consensus 286 ~s~nRvLLs----~~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 286 PSPNRVLLS----VNNKIYLLDLKFESILSEFE 314 (670)
T ss_pred CCCCeEEEE----cCCEEEEEeehhhhhhhhhh
Confidence 333345555 47999999998776666655
Done!