Query 019849
Match_columns 335
No_of_seqs 187 out of 1119
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 05:01:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019849.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019849hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03146 aspartyl protease fam 100.0 1.1E-47 2.4E-52 372.1 29.5 267 58-333 80-369 (431)
2 KOG1339 Aspartyl protease [Pos 100.0 2.3E-45 5.1E-50 353.4 28.1 270 52-333 36-329 (398)
3 cd05478 pepsin_A Pepsin A, asp 100.0 9.3E-42 2E-46 319.3 25.2 244 52-332 2-259 (317)
4 PTZ00165 aspartyl protease; Pr 100.0 8.9E-42 1.9E-46 333.1 25.4 245 49-332 109-372 (482)
5 cd05477 gastricsin Gastricsins 100.0 2.7E-41 5.8E-46 316.4 25.7 239 60-332 1-254 (318)
6 cd05472 cnd41_like Chloroplast 100.0 3.5E-41 7.5E-46 313.0 25.0 219 62-333 1-235 (299)
7 cd05488 Proteinase_A_fungi Fun 100.0 5.1E-41 1.1E-45 314.8 24.5 244 52-332 2-258 (320)
8 cd06097 Aspergillopepsin_like 100.0 5.1E-41 1.1E-45 308.7 23.6 240 63-334 1-253 (278)
9 cd05475 nucellin_like Nucellin 100.0 1E-40 2.2E-45 305.9 23.9 195 61-292 1-196 (273)
10 cd05490 Cathepsin_D2 Cathepsin 100.0 1.3E-40 2.8E-45 312.7 25.0 239 58-332 2-259 (325)
11 cd06096 Plasmepsin_5 Plasmepsi 100.0 1.8E-40 3.9E-45 311.7 25.9 227 61-299 2-257 (326)
12 cd05486 Cathespin_E Cathepsin 100.0 1.3E-40 2.8E-45 311.5 22.5 232 63-332 1-250 (316)
13 cd05485 Cathepsin_D_like Cathe 100.0 4.9E-40 1.1E-44 309.2 24.1 242 52-332 3-263 (329)
14 cd06098 phytepsin Phytepsin, a 100.0 1.1E-39 2.3E-44 305.4 25.8 227 58-332 6-251 (317)
15 PTZ00147 plasmepsin-1; Provisi 100.0 8.7E-40 1.9E-44 316.9 25.1 248 46-332 125-385 (453)
16 cd05487 renin_like Renin stimu 100.0 7E-39 1.5E-43 301.0 24.8 239 58-332 4-259 (326)
17 cd05489 xylanase_inhibitor_I_l 100.0 1.1E-38 2.4E-43 302.8 25.4 251 69-333 2-298 (362)
18 PTZ00013 plasmepsin 4 (PM4); P 100.0 1.5E-38 3.2E-43 307.7 26.2 247 47-332 125-384 (450)
19 cd05473 beta_secretase_like Be 100.0 2.5E-38 5.3E-43 301.6 26.8 242 62-332 3-276 (364)
20 cd05471 pepsin_like Pepsin-lik 100.0 5.4E-38 1.2E-42 288.1 25.7 240 63-334 1-258 (283)
21 cd05476 pepsin_A_like_plant Ch 100.0 9.7E-36 2.1E-40 271.9 21.2 177 62-292 1-195 (265)
22 cd05474 SAP_like SAPs, pepsin- 100.0 1.7E-35 3.6E-40 274.1 21.3 207 62-332 2-231 (295)
23 PF00026 Asp: Eukaryotic aspar 100.0 8E-35 1.7E-39 271.6 13.6 216 62-304 1-230 (317)
24 PF14543 TAXi_N: Xylanase inhi 100.0 1.2E-29 2.5E-34 215.1 14.0 156 63-233 1-164 (164)
25 cd05470 pepsin_retropepsin_lik 99.9 3.1E-23 6.6E-28 163.8 13.0 108 65-196 1-109 (109)
26 PF14541 TAXi_C: Xylanase inhi 99.3 7.7E-12 1.7E-16 105.7 8.1 80 254-333 1-100 (161)
27 cd05483 retropepsin_like_bacte 98.2 8.9E-06 1.9E-10 61.7 7.8 94 61-198 1-94 (96)
28 TIGR02281 clan_AA_DTGA clan AA 96.9 0.0075 1.6E-07 48.3 9.1 96 59-198 8-103 (121)
29 PF13650 Asp_protease_2: Aspar 96.2 0.044 9.4E-07 40.6 8.4 89 65-197 1-89 (90)
30 cd05479 RP_DDI RP_DDI; retrope 94.5 0.37 8.1E-06 38.5 9.2 32 59-92 13-44 (124)
31 cd05484 retropepsin_like_LTR_2 90.4 0.33 7.2E-06 36.3 3.5 28 63-92 1-28 (91)
32 TIGR02281 clan_AA_DTGA clan AA 90.2 0.64 1.4E-05 37.1 5.1 35 253-295 10-44 (121)
33 PF13975 gag-asp_proteas: gag- 88.5 0.87 1.9E-05 32.6 4.2 32 59-92 5-36 (72)
34 PF13650 Asp_protease_2: Aspar 88.2 0.71 1.5E-05 33.9 3.8 29 262-295 3-31 (90)
35 cd05484 retropepsin_like_LTR_2 86.4 1.1 2.4E-05 33.4 4.0 31 261-296 4-34 (91)
36 PF13975 gag-asp_proteas: gag- 85.2 1.5 3.2E-05 31.4 3.9 29 262-295 13-41 (72)
37 PF00077 RVP: Retroviral aspar 81.7 2.3 5E-05 32.1 4.0 27 64-92 7-33 (100)
38 cd05483 retropepsin_like_bacte 81.3 2.6 5.7E-05 31.1 4.2 30 261-295 6-35 (96)
39 cd06095 RP_RTVL_H_like Retrope 79.0 2.8 6E-05 31.0 3.6 29 262-295 3-31 (86)
40 cd05479 RP_DDI RP_DDI; retrope 74.9 4.4 9.4E-05 32.3 3.9 29 262-295 21-49 (124)
41 PF12384 Peptidase_A2B: Ty3 tr 74.1 4.4 9.6E-05 33.9 3.7 49 44-92 13-62 (177)
42 PF00077 RVP: Retroviral aspar 73.5 3.5 7.5E-05 31.1 2.8 28 261-293 9-36 (100)
43 COG3577 Predicted aspartyl pro 67.6 18 0.00039 31.6 6.1 86 50-174 95-180 (215)
44 cd05481 retropepsin_like_LTR_1 65.9 6.9 0.00015 29.5 3.0 31 262-296 3-33 (93)
45 COG3577 Predicted aspartyl pro 64.6 14 0.0003 32.2 4.8 35 253-295 104-138 (215)
46 cd05482 HIV_retropepsin_like R 64.2 9.8 0.00021 28.4 3.5 25 66-92 2-26 (87)
47 PF11925 DUF3443: Protein of u 64.2 58 0.0013 31.0 9.3 54 141-199 82-149 (370)
48 cd06095 RP_RTVL_H_like Retrope 62.9 9.9 0.00021 28.0 3.3 25 66-92 2-26 (86)
49 TIGR03698 clan_AA_DTGF clan AA 62.3 6.3 0.00014 30.6 2.2 22 274-295 17-39 (107)
50 PF09668 Asp_protease: Asparty 58.9 12 0.00027 29.9 3.4 30 261-295 28-57 (124)
51 COG5550 Predicted aspartyl pro 57.0 8.3 0.00018 30.7 2.0 20 276-295 29-49 (125)
52 PF07172 GRP: Glycine rich pro 50.6 10 0.00022 28.9 1.6 17 3-20 1-17 (95)
53 PF09668 Asp_protease: Asparty 39.9 53 0.0011 26.3 4.2 36 61-99 23-58 (124)
54 TIGR03698 clan_AA_DTGF clan AA 37.1 45 0.00099 25.7 3.4 27 65-91 2-33 (107)
55 cd05476 pepsin_A_like_plant Ch 36.8 67 0.0014 28.8 5.0 18 75-92 176-193 (265)
56 cd05472 cnd41_like Chloroplast 36.6 30 0.00066 31.6 2.8 44 49-92 134-188 (299)
57 COG4246 Uncharacterized protei 35.0 1.3E+02 0.0028 27.5 6.3 25 65-92 77-101 (340)
58 PF08284 RVP_2: Retroviral asp 31.7 69 0.0015 25.9 3.8 30 61-92 20-49 (135)
59 PF15240 Pro-rich: Proline-ric 31.6 22 0.00049 30.2 0.9 23 12-34 2-24 (179)
60 cd06098 phytepsin Phytepsin, a 30.1 58 0.0013 30.1 3.6 32 61-92 188-227 (317)
61 cd05475 nucellin_like Nucellin 29.9 59 0.0013 29.3 3.5 32 61-92 157-194 (273)
62 cd06097 Aspergillopepsin_like 26.3 65 0.0014 29.1 3.1 32 61-92 177-215 (278)
63 PF08284 RVP_2: Retroviral asp 25.1 55 0.0012 26.4 2.1 22 274-295 33-54 (135)
64 PF12384 Peptidase_A2B: Ty3 tr 24.2 56 0.0012 27.5 2.0 23 273-295 45-67 (177)
65 PLN03146 aspartyl protease fam 22.2 1.1E+02 0.0023 30.0 3.9 16 77-92 309-324 (431)
66 cd05489 xylanase_inhibitor_I_l 21.9 91 0.002 29.7 3.3 16 77-92 231-246 (362)
67 TIGR01165 cbiN cobalt transpor 21.7 81 0.0018 23.7 2.2 8 1-8 1-8 (91)
68 cd00303 retropepsin_like Retro 21.4 71 0.0015 21.6 1.9 22 274-295 10-31 (92)
69 PF05585 DUF1758: Putative pep 20.5 57 0.0012 27.0 1.4 22 274-295 13-34 (164)
70 cd06096 Plasmepsin_5 Plasmepsi 20.4 89 0.0019 29.0 2.9 28 260-290 6-33 (326)
71 PRK03719 ecotin; Provisional 20.3 4.1E+02 0.0088 22.4 6.4 12 60-71 60-71 (166)
No 1
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=1.1e-47 Score=372.10 Aligned_cols=267 Identities=28% Similarity=0.520 Sum_probs=219.9
Q ss_pred CCCeeEEEEEEeCCCCcEEEEEEeCCCCceeEecCCCCCCCCCCCCCCCCCCCC----cccCCccccCCCCCCCCCCCCC
Q 019849 58 YPLGYYSVTLKIGNPPKLYELDIDTGSDLTWVQCNAPCTGCTLPPESLYHPKNN----LVACNDPFCSAFHLPENIRCEA 133 (335)
Q Consensus 58 ~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~c~~C~~~~~~~y~p~~S----~v~c~~~~C~~~~~~~~~~c~~ 133 (335)
...++|+++|.||||||++.|+|||||+++||+|. +|..|..+.++.|||++| .++|.++.|..++. ...|..
T Consensus 80 ~~~~~Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~-~C~~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~--~~~c~~ 156 (431)
T PLN03146 80 SNGGEYLMNISIGTPPVPILAIADTGSDLIWTQCK-PCDDCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGN--QASCSD 156 (431)
T ss_pred cCCccEEEEEEcCCCCceEEEEECCCCCcceEcCC-CCcccccCCCCcccCCCCCCCcccCCCCcccccCCC--CCCCCC
Confidence 34679999999999999999999999999999999 999999888999999998 48999999987653 234766
Q ss_pred CCCCeeEEEeCCCCeEEEEEEEEEEEeeccCC-CcCCCceEEEeeeecCCCCCCCCCcceEEeeCCCCCchhhhhhhcCC
Q 019849 134 NDQCDYEVLYADHGSSLGVLVTDHFPLRLTNG-SLLGPRLIFGCGYNQRNPGPKPPPTAGVLGLGLGKASILSQLQSLGL 212 (335)
Q Consensus 134 ~~~~~~~~~Y~~Gs~~~G~~~~D~v~~~~~~g-~~~~~~~~Fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~g~ 212 (335)
+..|.|.+.|+||+.+.|.+++|+|+|++..+ ...++++.|||++...+.+. ...+||||||++..|++.||...
T Consensus 157 ~~~c~y~i~Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g~f~--~~~~GilGLG~~~~Sl~sql~~~-- 232 (431)
T PLN03146 157 ENTCTYSYSYGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGGTFD--EKGSGIVGLGGGPLSLISQLGSS-- 232 (431)
T ss_pred CCCCeeEEEeCCCCceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCCCCCcc--CCCceeEecCCCCccHHHHhhHh--
Confidence 66799999999998889999999999964321 13578999999998766442 25899999999999999999764
Q ss_pred cceeeeeeecc-----CCCceEEeCCCCCCC-CCcEEEeCccCCCCCceEEeeeEEEeCcEEccccC--------ccEEE
Q 019849 213 TRNVLGHCLSV-----RGGGYLFLGHDLVPS-SGIAWTPMSRDLLEKHYSSGPAELLFGGKSTGIKG--------LQIIF 278 (335)
Q Consensus 213 i~~~Fs~~L~~-----~~~G~l~~G~~~~~~-g~l~~~p~~~~~~~~~~~v~~~~i~v~g~~~~~~~--------~~~ii 278 (335)
+.++||+||.+ ...|.|+||+..+.. +++.|+|++.+..+.+|.|++++|+||++++.++. +.+||
T Consensus 233 ~~~~FSycL~~~~~~~~~~g~l~fG~~~~~~~~~~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~~~~~g~~ii 312 (431)
T PLN03146 233 IGGKFSYCLVPLSSDSNGTSKINFGTNAIVSGSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKNGVEEGNIII 312 (431)
T ss_pred hCCcEEEECCCCCCCCCCcceEEeCCccccCCCCceEcccccCCCCCeEEEeEEEEEECCEECcCCccccccCCCCcEEE
Confidence 55699999963 247999999865443 45899999864324699999999999999876532 47999
Q ss_pred eccccceeeCHHHHHHHHHHHHHHhcCCCCCCCcCCCCcCccccc----Cccceeeeee
Q 019849 279 DSGSSYTYFNSQAYKTTLDLMRKDLKGKPLEDTAEEKALPVCWKG----TWKCLLGNFE 333 (335)
Q Consensus 279 DSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~----~~~~~~~~f~ 333 (335)
||||++++||+++|++|.++|.+++...+.. .....++.||+. ..|.|+|||.
T Consensus 313 DSGTt~t~Lp~~~y~~l~~~~~~~~~~~~~~--~~~~~~~~C~~~~~~~~~P~i~~~F~ 369 (431)
T PLN03146 313 DSGTTLTLLPSDFYSELESAVEEAIGGERVS--DPQGLLSLCYSSTSDIKLPIITAHFT 369 (431)
T ss_pred eCCccceecCHHHHHHHHHHHHHHhccccCC--CCCCCCCccccCCCCCCCCeEEEEEC
Confidence 9999999999999999999999999743221 123357899984 4589999994
No 2
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-45 Score=353.43 Aligned_cols=270 Identities=31% Similarity=0.561 Sum_probs=224.3
Q ss_pred eeeeCCCCCeeEEEEEEeCCCCcEEEEEEeCCCCceeEecCCCCC-CCCCCCCCCCCCCCC----cccCCccccCCCCCC
Q 019849 52 PITGNVYPLGYYSVTLKIGNPPKLYELDIDTGSDLTWVQCNAPCT-GCTLPPESLYHPKNN----LVACNDPFCSAFHLP 126 (335)
Q Consensus 52 pl~~~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~c~-~C~~~~~~~y~p~~S----~v~c~~~~C~~~~~~ 126 (335)
+...+.+..++|+++|.||||||+|.|+|||||+++||+|. +|. .|..+.++.|+|++| .+.|.++.|.....
T Consensus 36 ~~~~~~~~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~-~c~~~C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~~~- 113 (398)
T KOG1339|consen 36 PESLSSYSSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCA-PCSSACYSQHNPIFDPSASSTYKSVGCSSPRCKSLPQ- 113 (398)
T ss_pred ccccccccccccEEEEecCCCCeeeEEEEeCCCCceeeccc-cccccccccCCCccCccccccccccCCCCcccccccc-
Confidence 33345567889999999999999999999999999999998 999 898766666999999 48999999998764
Q ss_pred CCCCCCCCCCCeeEEEeCCCCeEEEEEEEEEEEeeccCCCcCCCceEEEeeeecCCCCCCC-CCcceEEeeCCCCCchhh
Q 019849 127 ENIRCEANDQCDYEVLYADHGSSLGVLVTDHFPLRLTNGSLLGPRLIFGCGYNQRNPGPKP-PPTAGVLGLGLGKASILS 205 (335)
Q Consensus 127 ~~~~c~~~~~~~~~~~Y~~Gs~~~G~~~~D~v~~~~~~g~~~~~~~~Fg~~~~~~~~~~~~-~~~~GIlGLg~~~~s~~~ 205 (335)
.|..++.|.|.+.|++|+.++|.+++|+|+|++.+ ...++++.|||+....+. ... .+.+||||||+..++++.
T Consensus 114 ---~~~~~~~C~y~i~Ygd~~~~~G~l~~Dtv~~~~~~-~~~~~~~~FGc~~~~~g~-~~~~~~~dGIlGLg~~~~S~~~ 188 (398)
T KOG1339|consen 114 ---SCSPNSSCPYSIQYGDGSSTSGYLATDTVTFGGTT-SLPVPNQTFGCGTNNPGS-FGLFAAFDGILGLGRGSLSVPS 188 (398)
T ss_pred ---CcccCCcCceEEEeCCCCceeEEEEEEEEEEcccc-ccccccEEEEeeecCccc-cccccccceEeecCCCCcccee
Confidence 27777899999999998799999999999995322 266778999999988764 212 568999999999999999
Q ss_pred hhhhcCCcceeeeeeeccC-----CCceEEeCCCCCC--CCCcEEEeCccCCCCCceEEeeeEEEeCcEE------cccc
Q 019849 206 QLQSLGLTRNVLGHCLSVR-----GGGYLFLGHDLVP--SSGIAWTPMSRDLLEKHYSSGPAELLFGGKS------TGIK 272 (335)
Q Consensus 206 ql~~~g~i~~~Fs~~L~~~-----~~G~l~~G~~~~~--~g~l~~~p~~~~~~~~~~~v~~~~i~v~g~~------~~~~ 272 (335)
|+...+...++||+||.+. ..|.|+||+.+.. .+.+.|+|+..+.. .+|.|++.+|+|+++. ...+
T Consensus 189 q~~~~~~~~~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~-~~y~v~l~~I~vgg~~~~~~~~~~~~ 267 (398)
T KOG1339|consen 189 QLPSFYNAINVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPS-TYYQVNLDGISVGGKRPIGSSLFCTD 267 (398)
T ss_pred ecccccCCceeEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCC-ccEEEEEeEEEECCccCCCcceEecC
Confidence 9999876677999999954 4799999998754 57899999998863 5999999999999843 1222
Q ss_pred CccEEEeccccceeeCHHHHHHHHHHHHHHhcCCCCCCCcCCCCcCcccccCc-----cceeeeee
Q 019849 273 GLQIIFDSGSSYTYFNSQAYKTTLDLMRKDLKGKPLEDTAEEKALPVCWKGTW-----KCLLGNFE 333 (335)
Q Consensus 273 ~~~~iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~-----~~~~~~f~ 333 (335)
.+++|+||||++++||+++|++|.++|.+.++ . ..........||+... |.+.+||.
T Consensus 268 ~~~~iiDSGTs~t~lp~~~y~~i~~~~~~~~~---~-~~~~~~~~~~C~~~~~~~~~~P~i~~~f~ 329 (398)
T KOG1339|consen 268 GGGAIIDSGTSLTYLPTSAYNALREAIGAEVS---V-VGTDGEYFVPCFSISTSGVKLPDITFHFG 329 (398)
T ss_pred CCCEEEECCcceeeccHHHHHHHHHHHHhhee---c-cccCCceeeecccCCCCcccCCcEEEEEC
Confidence 48999999999999999999999999999861 1 0112334568999874 88999996
No 3
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=9.3e-42 Score=319.34 Aligned_cols=244 Identities=20% Similarity=0.315 Sum_probs=198.5
Q ss_pred eeeeCCCCCeeEEEEEEeCCCCcEEEEEEeCCCCceeEecCCCCCCCCCCCCCCCCCCCCcccCCccccCCCCCCCCCCC
Q 019849 52 PITGNVYPLGYYSVTLKIGNPPKLYELDIDTGSDLTWVQCNAPCTGCTLPPESLYHPKNNLVACNDPFCSAFHLPENIRC 131 (335)
Q Consensus 52 pl~~~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~c~~C~~~~~~~y~p~~S~v~c~~~~C~~~~~~~~~~c 131 (335)
||.+ +.+.+|+++|.||||||++.|+|||||+++||+|. .|..|..+.++.|+|++|+ +|+.
T Consensus 2 ~l~n--~~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~-~C~~~~c~~~~~f~~~~Ss------t~~~--------- 63 (317)
T cd05478 2 PLTN--YLDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSV-YCSSQACSNHNRFNPRQSS------TYQS--------- 63 (317)
T ss_pred cccc--ccCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecC-CCCcccccccCcCCCCCCc------ceee---------
Confidence 4542 45789999999999999999999999999999998 8986555568899998884 2221
Q ss_pred CCCCCCeeEEEeCCCCeEEEEEEEEEEEeeccCCCcCCCceEEEeeeecCCCCCCCCCcceEEeeCCCC------Cchhh
Q 019849 132 EANDQCDYEVLYADHGSSLGVLVTDHFPLRLTNGSLLGPRLIFGCGYNQRNPGPKPPPTAGVLGLGLGK------ASILS 205 (335)
Q Consensus 132 ~~~~~~~~~~~Y~~Gs~~~G~~~~D~v~~~~~~g~~~~~~~~Fg~~~~~~~~~~~~~~~~GIlGLg~~~------~s~~~ 205 (335)
.++.|.+.|++| ++.|.+++|+|+| |+..++++.|||++...+.+......+||||||++. .+++.
T Consensus 64 ---~~~~~~~~yg~g-s~~G~~~~D~v~i----g~~~i~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~ 135 (317)
T cd05478 64 ---TGQPLSIQYGTG-SMTGILGYDTVQV----GGISDTNQIFGLSETEPGSFFYYAPFDGILGLAYPSIASSGATPVFD 135 (317)
T ss_pred ---CCcEEEEEECCc-eEEEEEeeeEEEE----CCEEECCEEEEEEEecCccccccccccceeeeccchhcccCCCCHHH
Confidence 357899999999 5899999999999 567788999999987665433234589999999874 35889
Q ss_pred hhhhcCCc-ceeeeeeeccC--CCceEEeCCCCC--CCCCcEEEeCccCCCCCceEEeeeEEEeCcEEcccc-CccEEEe
Q 019849 206 QLQSLGLT-RNVLGHCLSVR--GGGYLFLGHDLV--PSSGIAWTPMSRDLLEKHYSSGPAELLFGGKSTGIK-GLQIIFD 279 (335)
Q Consensus 206 ql~~~g~i-~~~Fs~~L~~~--~~G~l~~G~~~~--~~g~l~~~p~~~~~~~~~~~v~~~~i~v~g~~~~~~-~~~~iiD 279 (335)
+|+++|+| +++||+||.+. ..|+|+|||+|. ..|++.|+|+... .+|.|.+++|+|||+.+... +..+|||
T Consensus 136 ~L~~~g~i~~~~FS~~L~~~~~~~g~l~~Gg~d~~~~~g~l~~~p~~~~---~~w~v~l~~v~v~g~~~~~~~~~~~iiD 212 (317)
T cd05478 136 NMMSQGLVSQDLFSVYLSSNGQQGSVVTFGGIDPSYYTGSLNWVPVTAE---TYWQITVDSVTINGQVVACSGGCQAIVD 212 (317)
T ss_pred HHHhCCCCCCCEEEEEeCCCCCCCeEEEEcccCHHHccCceEEEECCCC---cEEEEEeeEEEECCEEEccCCCCEEEEC
Confidence 99999999 89999999854 479999999874 4799999999764 59999999999999987543 4689999
Q ss_pred ccccceeeCHHHHHHHHHHHHHHhcCCCCCCCcCCCCc-Cccccc-Cccceeeee
Q 019849 280 SGSSYTYFNSQAYKTTLDLMRKDLKGKPLEDTAEEKAL-PVCWKG-TWKCLLGNF 332 (335)
Q Consensus 280 SGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~-~~C~~~-~~~~~~~~f 332 (335)
|||+++++|+++|++|.+++...... ...+ -.|.+. ..|.+.|+|
T Consensus 213 TGts~~~lp~~~~~~l~~~~~~~~~~--------~~~~~~~C~~~~~~P~~~f~f 259 (317)
T cd05478 213 TGTSLLVGPSSDIANIQSDIGASQNQ--------NGEMVVNCSSISSMPDVVFTI 259 (317)
T ss_pred CCchhhhCCHHHHHHHHHHhCCcccc--------CCcEEeCCcCcccCCcEEEEE
Confidence 99999999999999999888543221 1112 268875 468899988
No 4
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=8.9e-42 Score=333.11 Aligned_cols=245 Identities=19% Similarity=0.308 Sum_probs=195.6
Q ss_pred eeeeeeeCCCCCeeEEEEEEeCCCCcEEEEEEeCCCCceeEecCCCCCCCCCCCCCCCCCCCCcccCCccccCCCCCCCC
Q 019849 49 AVFPITGNVYPLGYYSVTLKIGNPPKLYELDIDTGSDLTWVQCNAPCTGCTLPPESLYHPKNNLVACNDPFCSAFHLPEN 128 (335)
Q Consensus 49 ~~~pl~~~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~c~~C~~~~~~~y~p~~S~v~c~~~~C~~~~~~~~ 128 (335)
...||. .+.+.+|+++|+||||||+|.|+|||||+++||+|. .|..|....++.|||++|+ +++..
T Consensus 109 ~~~~l~--n~~d~~Y~~~I~IGTPpQ~f~Vv~DTGSS~lWVps~-~C~~~~C~~~~~yd~s~SS------Ty~~~----- 174 (482)
T PTZ00165 109 LQQDLL--NFHNSQYFGEIQVGTPPKSFVVVFDTGSSNLWIPSK-ECKSGGCAPHRKFDPKKSS------TYTKL----- 174 (482)
T ss_pred cceecc--cccCCeEEEEEEeCCCCceEEEEEeCCCCCEEEEch-hcCcccccccCCCCccccC------CcEec-----
Confidence 345554 378899999999999999999999999999999999 8975444568899999985 22211
Q ss_pred CCCCCCCCCeeEEEeCCCCeEEEEEEEEEEEeeccCCCcCCCceEEEeeeecCCCCCCCCCcceEEeeCCCC--------
Q 019849 129 IRCEANDQCDYEVLYADHGSSLGVLVTDHFPLRLTNGSLLGPRLIFGCGYNQRNPGPKPPPTAGVLGLGLGK-------- 200 (335)
Q Consensus 129 ~~c~~~~~~~~~~~Y~~Gs~~~G~~~~D~v~~~~~~g~~~~~~~~Fg~~~~~~~~~~~~~~~~GIlGLg~~~-------- 200 (335)
+.......|.++|++| ++.|.+++|+|+| |+..++++.||+++...+.......+|||||||++.
T Consensus 175 --~~~~~~~~~~i~YGsG-s~~G~l~~DtV~i----g~l~i~~q~FG~a~~~s~~~f~~~~~DGILGLg~~~~s~~s~~~ 247 (482)
T PTZ00165 175 --KLGDESAETYIQYGTG-ECVLALGKDTVKI----GGLKVKHQSIGLAIEESLHPFADLPFDGLVGLGFPDKDFKESKK 247 (482)
T ss_pred --CCCCccceEEEEeCCC-cEEEEEEEEEEEE----CCEEEccEEEEEEEeccccccccccccceeecCCCcccccccCC
Confidence 0001123678999999 7889999999999 577899999999987654322245689999999875
Q ss_pred -CchhhhhhhcCCc-ceeeeeeecc--CCCceEEeCCCCCC----CCCcEEEeCccCCCCCceEEeeeEEEeCcEEccc-
Q 019849 201 -ASILSQLQSLGLT-RNVLGHCLSV--RGGGYLFLGHDLVP----SSGIAWTPMSRDLLEKHYSSGPAELLFGGKSTGI- 271 (335)
Q Consensus 201 -~s~~~ql~~~g~i-~~~Fs~~L~~--~~~G~l~~G~~~~~----~g~l~~~p~~~~~~~~~~~v~~~~i~v~g~~~~~- 271 (335)
.+++.+|++||+| +++||+||++ ..+|+|+|||+|.. .+++.|+|+... .+|+|.+++|++|++.+..
T Consensus 248 ~~p~~~~l~~qgli~~~~FS~yL~~~~~~~G~l~fGGiD~~~~~~~g~i~~~Pv~~~---~yW~i~l~~i~vgg~~~~~~ 324 (482)
T PTZ00165 248 ALPIVDNIKKQNLLKRNIFSFYMSKDLNQPGSISFGSADPKYTLEGHKIWWFPVIST---DYWEIEVVDILIDGKSLGFC 324 (482)
T ss_pred CCCHHHHHHHcCCcccceEEEEeccCCCCCCEEEeCCcCHHHcCCCCceEEEEcccc---ceEEEEeCeEEECCEEeeec
Confidence 3577899999999 8999999974 35799999999742 468999999875 5999999999999977643
Q ss_pred -cCccEEEeccccceeeCHHHHHHHHHHHHHHhcCCCCCCCcCCCCcCccccc-Cccceeeee
Q 019849 272 -KGLQIIFDSGSSYTYFNSQAYKTTLDLMRKDLKGKPLEDTAEEKALPVCWKG-TWKCLLGNF 332 (335)
Q Consensus 272 -~~~~~iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~-~~~~~~~~f 332 (335)
..+.+|+||||+++++|++++++|.++|... ..|.+. ..|.+.|+|
T Consensus 325 ~~~~~aIiDTGTSli~lP~~~~~~i~~~i~~~---------------~~C~~~~~lP~itf~f 372 (482)
T PTZ00165 325 DRKCKAAIDTGSSLITGPSSVINPLLEKIPLE---------------EDCSNKDSLPRISFVL 372 (482)
T ss_pred CCceEEEEcCCCccEeCCHHHHHHHHHHcCCc---------------ccccccccCCceEEEE
Confidence 4578999999999999999999998876421 147764 358888777
No 5
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=2.7e-41 Score=316.38 Aligned_cols=239 Identities=21% Similarity=0.303 Sum_probs=193.9
Q ss_pred CeeEEEEEEeCCCCcEEEEEEeCCCCceeEecCCCCCCCCCCCCCCCCCCCCcccCCccccCCCCCCCCCCCCCCCCCee
Q 019849 60 LGYYSVTLKIGNPPKLYELDIDTGSDLTWVQCNAPCTGCTLPPESLYHPKNNLVACNDPFCSAFHLPENIRCEANDQCDY 139 (335)
Q Consensus 60 ~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~c~~C~~~~~~~y~p~~S~v~c~~~~C~~~~~~~~~~c~~~~~~~~ 139 (335)
+..|+++|.||||||++.|+|||||+++||+|. .|..+....++.|+|++|+ +|+ ..+|.|
T Consensus 1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~-~C~~~~C~~~~~f~~~~Ss------T~~------------~~~~~~ 61 (318)
T cd05477 1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSV-LCQSQACTNHTKFNPSQSS------TYS------------TNGETF 61 (318)
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCCccEEEccC-CCCCccccccCCCCcccCC------Cce------------ECCcEE
Confidence 358999999999999999999999999999998 8974333357899999884 221 146899
Q ss_pred EEEeCCCCeEEEEEEEEEEEeeccCCCcCCCceEEEeeeecCCCCCCCCCcceEEeeCCC------CCchhhhhhhcCCc
Q 019849 140 EVLYADHGSSLGVLVTDHFPLRLTNGSLLGPRLIFGCGYNQRNPGPKPPPTAGVLGLGLG------KASILSQLQSLGLT 213 (335)
Q Consensus 140 ~~~Y~~Gs~~~G~~~~D~v~~~~~~g~~~~~~~~Fg~~~~~~~~~~~~~~~~GIlGLg~~------~~s~~~ql~~~g~i 213 (335)
.+.|++| ++.|.+++|+|+| |+..++++.|||++...+........+||||||++ ..+++.||+++|.|
T Consensus 62 ~~~Yg~G-s~~G~~~~D~i~~----g~~~i~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~L~~~g~i 136 (318)
T cd05477 62 SLQYGSG-SLTGIFGYDTVTV----QGIIITNQEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGATTVMQGMMQQNLL 136 (318)
T ss_pred EEEECCc-EEEEEEEeeEEEE----CCEEEcCEEEEEEEecccccccccceeeEeecCcccccccCCCCHHHHHHhcCCc
Confidence 9999999 6899999999999 57788999999998765432223457999999985 36789999999999
Q ss_pred -ceeeeeeeccC---CCceEEeCCCCC--CCCCcEEEeCccCCCCCceEEeeeEEEeCcEEccc--cCccEEEeccccce
Q 019849 214 -RNVLGHCLSVR---GGGYLFLGHDLV--PSSGIAWTPMSRDLLEKHYSSGPAELLFGGKSTGI--KGLQIIFDSGSSYT 285 (335)
Q Consensus 214 -~~~Fs~~L~~~---~~G~l~~G~~~~--~~g~l~~~p~~~~~~~~~~~v~~~~i~v~g~~~~~--~~~~~iiDSGTs~~ 285 (335)
+++||+||.+. ..|.|+||++++ ..+++.|+|+... .+|.|.+++|+++++++.. .+..+||||||+++
T Consensus 137 ~~~~FS~~L~~~~~~~~g~l~fGg~d~~~~~g~l~~~pv~~~---~~w~v~l~~i~v~g~~~~~~~~~~~~iiDSGtt~~ 213 (318)
T cd05477 137 QAPIFSFYLSGQQGQQGGELVFGGVDNNLYTGQIYWTPVTSE---TYWQIGIQGFQINGQATGWCSQGCQAIVDTGTSLL 213 (318)
T ss_pred CCCEEEEEEcCCCCCCCCEEEEcccCHHHcCCceEEEecCCc---eEEEEEeeEEEECCEEecccCCCceeeECCCCccE
Confidence 89999999853 479999999874 4689999999765 5999999999999987642 34689999999999
Q ss_pred eeCHHHHHHHHHHHHHHhcCCCCCCCcCCCCcCcccccC-ccceeeee
Q 019849 286 YFNSQAYKTTLDLMRKDLKGKPLEDTAEEKALPVCWKGT-WKCLLGNF 332 (335)
Q Consensus 286 ~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~-~~~~~~~f 332 (335)
++|+++|++|++++.++....+ .-.-.|.+.. .|.+.|+|
T Consensus 214 ~lP~~~~~~l~~~~~~~~~~~~-------~~~~~C~~~~~~p~l~~~f 254 (318)
T cd05477 214 TAPQQVMSTLMQSIGAQQDQYG-------QYVVNCNNIQNLPTLTFTI 254 (318)
T ss_pred ECCHHHHHHHHHHhCCccccCC-------CEEEeCCccccCCcEEEEE
Confidence 9999999999998865443211 0012488754 58898888
No 6
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=3.5e-41 Score=312.96 Aligned_cols=219 Identities=34% Similarity=0.555 Sum_probs=183.2
Q ss_pred eEEEEEEeCCCCcEEEEEEeCCCCceeEecCCCCCCCCCCCCCCCCCCCCcccCCccccCCCCCCCCCCCCCCCCCeeEE
Q 019849 62 YYSVTLKIGNPPKLYELDIDTGSDLTWVQCNAPCTGCTLPPESLYHPKNNLVACNDPFCSAFHLPENIRCEANDQCDYEV 141 (335)
Q Consensus 62 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~c~~C~~~~~~~y~p~~S~v~c~~~~C~~~~~~~~~~c~~~~~~~~~~ 141 (335)
+|+++|.||||||++.|+|||||+++||+|. +| |.|.+
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~-~c-----------------------------------------~~~~i 38 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQ-PC-----------------------------------------CLYQV 38 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCC-CC-----------------------------------------Ceeee
Confidence 5999999999999999999999999999886 33 47899
Q ss_pred EeCCCCeEEEEEEEEEEEeeccCCCc-CCCceEEEeeeecCCCCCCCCCcceEEeeCCCCCchhhhhhhcCCcceeeeee
Q 019849 142 LYADHGSSLGVLVTDHFPLRLTNGSL-LGPRLIFGCGYNQRNPGPKPPPTAGVLGLGLGKASILSQLQSLGLTRNVLGHC 220 (335)
Q Consensus 142 ~Y~~Gs~~~G~~~~D~v~~~~~~g~~-~~~~~~Fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~g~i~~~Fs~~ 220 (335)
.|++|+.++|.+++|+|+| ++. .++++.|||+...++.+ ...+||||||+...+++.|+..+ .+++||+|
T Consensus 39 ~Yg~Gs~~~G~~~~D~v~i----g~~~~~~~~~Fg~~~~~~~~~---~~~~GilGLg~~~~s~~~ql~~~--~~~~FS~~ 109 (299)
T cd05472 39 SYGDGSYTTGDLATDTLTL----GSSDVVPGFAFGCGHDNEGLF---GGAAGLLGLGRGKLSLPSQTASS--YGGVFSYC 109 (299)
T ss_pred EeCCCceEEEEEEEEEEEe----CCCCccCCEEEECCccCCCcc---CCCCEEEECCCCcchHHHHhhHh--hcCceEEE
Confidence 9999977899999999999 455 68899999998776543 25899999999999999998765 47899999
Q ss_pred ecc---CCCceEEeCCCCCCCCCcEEEeCccCCC-CCceEEeeeEEEeCcEEccc-----cCccEEEeccccceeeCHHH
Q 019849 221 LSV---RGGGYLFLGHDLVPSSGIAWTPMSRDLL-EKHYSSGPAELLFGGKSTGI-----KGLQIIFDSGSSYTYFNSQA 291 (335)
Q Consensus 221 L~~---~~~G~l~~G~~~~~~g~l~~~p~~~~~~-~~~~~v~~~~i~v~g~~~~~-----~~~~~iiDSGTs~~~lp~~~ 291 (335)
|.+ ...|+|+||+++...+++.|+|++.++. ..+|.|++++|+||++.+.. .+..++|||||+++++|+++
T Consensus 110 L~~~~~~~~G~l~fGg~d~~~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTt~~~lp~~~ 189 (299)
T cd05472 110 LPDRSSSSSGYLSFGAAASVPAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRLPPSA 189 (299)
T ss_pred ccCCCCCCCceEEeCCccccCCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccccCCCCeEEeCCCcceecCHHH
Confidence 985 4589999999986688999999987642 36899999999999998764 24689999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCcCCCCcCccccc------Cccceeeeee
Q 019849 292 YKTTLDLMRKDLKGKPLEDTAEEKALPVCWKG------TWKCLLGNFE 333 (335)
Q Consensus 292 ~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~------~~~~~~~~f~ 333 (335)
|++|.++|.+++... .+......++.||+. ..|.+.|+|.
T Consensus 190 ~~~l~~~l~~~~~~~--~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~ 235 (299)
T cd05472 190 YAALRDAFRAAMAAY--PRAPGFSILDTCYDLSGFRSVSVPTVSLHFQ 235 (299)
T ss_pred HHHHHHHHHHHhccC--CCCCCCCCCCccCcCCCCcCCccCCEEEEEC
Confidence 999999999887532 222122345579864 4588999884
No 7
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=5.1e-41 Score=314.75 Aligned_cols=244 Identities=20% Similarity=0.284 Sum_probs=196.4
Q ss_pred eeeeCCCCCeeEEEEEEeCCCCcEEEEEEeCCCCceeEecCCCCCCCCCCCCCCCCCCCCcccCCccccCCCCCCCCCCC
Q 019849 52 PITGNVYPLGYYSVTLKIGNPPKLYELDIDTGSDLTWVQCNAPCTGCTLPPESLYHPKNNLVACNDPFCSAFHLPENIRC 131 (335)
Q Consensus 52 pl~~~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~c~~C~~~~~~~y~p~~S~v~c~~~~C~~~~~~~~~~c 131 (335)
||.+ +.+.+|+++|+||||+|++.|+|||||+++||+|. .|..+....++.|+|++|+ +|.
T Consensus 2 ~l~n--~~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~-~C~~~~C~~~~~y~~~~Ss------t~~---------- 62 (320)
T cd05488 2 PLTN--YLNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSV-KCGSIACFLHSKYDSSASS------TYK---------- 62 (320)
T ss_pred cccc--cCCCEEEEEEEECCCCcEEEEEEecCCcceEEEcC-CCCCcccCCcceECCCCCc------cee----------
Confidence 5542 56788999999999999999999999999999999 8974222356789998884 121
Q ss_pred CCCCCCeeEEEeCCCCeEEEEEEEEEEEeeccCCCcCCCceEEEeeeecCCCCCCCCCcceEEeeCCCCCc------hhh
Q 019849 132 EANDQCDYEVLYADHGSSLGVLVTDHFPLRLTNGSLLGPRLIFGCGYNQRNPGPKPPPTAGVLGLGLGKAS------ILS 205 (335)
Q Consensus 132 ~~~~~~~~~~~Y~~Gs~~~G~~~~D~v~~~~~~g~~~~~~~~Fg~~~~~~~~~~~~~~~~GIlGLg~~~~s------~~~ 205 (335)
..+|.|.+.|++| ++.|.+++|+|+| ++..++++.|||++...+........+||||||++..+ ...
T Consensus 63 --~~~~~~~~~y~~g-~~~G~~~~D~v~i----g~~~~~~~~f~~a~~~~g~~~~~~~~dGilGLg~~~~s~~~~~~~~~ 135 (320)
T cd05488 63 --ANGTEFKIQYGSG-SLEGFVSQDTLSI----GDLTIKKQDFAEATSEPGLAFAFGKFDGILGLAYDTISVNKIVPPFY 135 (320)
T ss_pred --eCCCEEEEEECCc-eEEEEEEEeEEEE----CCEEECCEEEEEEecCCCcceeeeeeceEEecCCccccccCCCCHHH
Confidence 1468999999999 5899999999999 56778899999998765542223457999999998654 345
Q ss_pred hhhhcCCc-ceeeeeeecc--CCCceEEeCCCCC--CCCCcEEEeCccCCCCCceEEeeeEEEeCcEEccccCccEEEec
Q 019849 206 QLQSLGLT-RNVLGHCLSV--RGGGYLFLGHDLV--PSSGIAWTPMSRDLLEKHYSSGPAELLFGGKSTGIKGLQIIFDS 280 (335)
Q Consensus 206 ql~~~g~i-~~~Fs~~L~~--~~~G~l~~G~~~~--~~g~l~~~p~~~~~~~~~~~v~~~~i~v~g~~~~~~~~~~iiDS 280 (335)
+|+++|.| +++||+||.+ ...|.|+||+++. ..+++.|+|+... .+|.|++++|++|++.+...+..++|||
T Consensus 136 ~l~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~---~~w~v~l~~i~vg~~~~~~~~~~~ivDS 212 (320)
T cd05488 136 NMINQGLLDEPVFSFYLGSSEEDGGEATFGGIDESRFTGKITWLPVRRK---AYWEVELEKIGLGDEELELENTGAAIDT 212 (320)
T ss_pred HHHhcCCCCCCEEEEEecCCCCCCcEEEECCcCHHHcCCceEEEeCCcC---cEEEEEeCeEEECCEEeccCCCeEEEcC
Confidence 78999999 8999999985 3689999999874 4689999999864 5999999999999998877778999999
Q ss_pred cccceeeCHHHHHHHHHHHHHHhcCCCCCCCcCCCCc-CcccccC-ccceeeee
Q 019849 281 GSSYTYFNSQAYKTTLDLMRKDLKGKPLEDTAEEKAL-PVCWKGT-WKCLLGNF 332 (335)
Q Consensus 281 GTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~-~~C~~~~-~~~~~~~f 332 (335)
||+++++|++++++|.+++.+... ....+ -.|.+.. .|.+.|+|
T Consensus 213 Gtt~~~lp~~~~~~l~~~~~~~~~--------~~~~~~~~C~~~~~~P~i~f~f 258 (320)
T cd05488 213 GTSLIALPSDLAEMLNAEIGAKKS--------WNGQYTVDCSKVDSLPDLTFNF 258 (320)
T ss_pred CcccccCCHHHHHHHHHHhCCccc--------cCCcEEeeccccccCCCEEEEE
Confidence 999999999999998887753221 11112 2488754 59999998
No 8
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=5.1e-41 Score=308.73 Aligned_cols=240 Identities=19% Similarity=0.260 Sum_probs=192.7
Q ss_pred EEEEEEeCCCCcEEEEEEeCCCCceeEecCCCCCCCCCCCCCCCCCCCCcccCCccccCCCCCCCCCCCCCCCCCeeEEE
Q 019849 63 YSVTLKIGNPPKLYELDIDTGSDLTWVQCNAPCTGCTLPPESLYHPKNNLVACNDPFCSAFHLPENIRCEANDQCDYEVL 142 (335)
Q Consensus 63 Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~c~~C~~~~~~~y~p~~S~v~c~~~~C~~~~~~~~~~c~~~~~~~~~~~ 142 (335)
|+++|+||||||++.|+|||||+++||+|. .|..|....++.|+|++|+ +|+. ..+|.|.+.
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~-~c~~~~~~~~~~y~~~~Ss------t~~~-----------~~~~~~~i~ 62 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSS-ETPAAQQGGHKLYDPSKSS------TAKL-----------LPGATWSIS 62 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeC-CCCchhhccCCcCCCccCc------ccee-----------cCCcEEEEE
Confidence 789999999999999999999999999999 9999987778889998874 2211 135799999
Q ss_pred eCCCCeEEEEEEEEEEEeeccCCCcCCCceEEEeeeecCCCCCCCCCcceEEeeCCCCC---------chhhhhhhcCCc
Q 019849 143 YADHGSSLGVLVTDHFPLRLTNGSLLGPRLIFGCGYNQRNPGPKPPPTAGVLGLGLGKA---------SILSQLQSLGLT 213 (335)
Q Consensus 143 Y~~Gs~~~G~~~~D~v~~~~~~g~~~~~~~~Fg~~~~~~~~~~~~~~~~GIlGLg~~~~---------s~~~ql~~~g~i 213 (335)
|++|+.+.|.+++|+|+| |+..++++.||+++...+........+||||||++.. +++.+|.+++.
T Consensus 63 Y~~G~~~~G~~~~D~v~i----g~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~l~~~~~- 137 (278)
T cd06097 63 YGDGSSASGIVYTDTVSI----GGVEVPNQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPKQKTFFENALSSLD- 137 (278)
T ss_pred eCCCCeEEEEEEEEEEEE----CCEEECCeEEEEEeecCccccccccccceeeeccccccccccCCCCCHHHHHHHhcc-
Confidence 999977999999999999 5677899999999887653323457999999998753 45677888764
Q ss_pred ceeeeeeeccCCCceEEeCCCCC--CCCCcEEEeCccCCCCCceEEeeeEEEeCcEE-ccccCccEEEeccccceeeCHH
Q 019849 214 RNVLGHCLSVRGGGYLFLGHDLV--PSSGIAWTPMSRDLLEKHYSSGPAELLFGGKS-TGIKGLQIIFDSGSSYTYFNSQ 290 (335)
Q Consensus 214 ~~~Fs~~L~~~~~G~l~~G~~~~--~~g~l~~~p~~~~~~~~~~~v~~~~i~v~g~~-~~~~~~~~iiDSGTs~~~lp~~ 290 (335)
+++||+||.+...|+|+|||+|. ..|++.|+|+..+. .+|.|.+++|.++++. ....+..++|||||+++++|++
T Consensus 138 ~~~Fs~~l~~~~~G~l~fGg~D~~~~~g~l~~~pi~~~~--~~w~v~l~~i~v~~~~~~~~~~~~~iiDSGTs~~~lP~~ 215 (278)
T cd06097 138 APLFTADLRKAAPGFYTFGYIDESKYKGEISWTPVDNSS--GFWQFTSTSYTVGGDAPWSRSGFSAIADTGTTLILLPDA 215 (278)
T ss_pred CceEEEEecCCCCcEEEEeccChHHcCCceEEEEccCCC--cEEEEEEeeEEECCcceeecCCceEEeecCCchhcCCHH
Confidence 89999999977789999999874 47999999998743 6999999999999873 2334689999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcCCCCc-CcccccCccceeeeeee
Q 019849 291 AYKTTLDLMRKDLKGKPLEDTAEEKAL-PVCWKGTWKCLLGNFEW 334 (335)
Q Consensus 291 ~~~~l~~~i~~~~~~~~~~~~~~~~~~-~~C~~~~~~~~~~~f~~ 334 (335)
++++|.++|..... .. ....+ -.|-.. .|.+.|+|.|
T Consensus 216 ~~~~l~~~l~g~~~----~~--~~~~~~~~C~~~-~P~i~f~~~~ 253 (278)
T cd06097 216 IVEAYYSQVPGAYY----DS--EYGGWVFPCDTT-LPDLSFAVFS 253 (278)
T ss_pred HHHHHHHhCcCCcc----cC--CCCEEEEECCCC-CCCEEEEEEE
Confidence 99999888841111 00 11111 246654 7999998855
No 9
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=1e-40 Score=305.93 Aligned_cols=195 Identities=70% Similarity=1.268 Sum_probs=167.2
Q ss_pred eeEEEEEEeCCCCcEEEEEEeCCCCceeEecCCCCCCCCCCCCCCCCCCCCcccCCccccCCCCCCCCCCCCCCCCCeeE
Q 019849 61 GYYSVTLKIGNPPKLYELDIDTGSDLTWVQCNAPCTGCTLPPESLYHPKNNLVACNDPFCSAFHLPENIRCEANDQCDYE 140 (335)
Q Consensus 61 ~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~c~~C~~~~~~~y~p~~S~v~c~~~~C~~~~~~~~~~c~~~~~~~~~ 140 (335)
++|+++|.||||||++.|+|||||+++||+|..+|..| .|.|.
T Consensus 1 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~~c-------------------------------------~c~~~ 43 (273)
T cd05475 1 GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCTGC-------------------------------------QCDYE 43 (273)
T ss_pred CceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCCCC-------------------------------------cCccE
Confidence 47999999999999999999999999999984245433 36899
Q ss_pred EEeCCCCeEEEEEEEEEEEeeccCCCcCCCceEEEeeeecCCCC-CCCCCcceEEeeCCCCCchhhhhhhcCCcceeeee
Q 019849 141 VLYADHGSSLGVLVTDHFPLRLTNGSLLGPRLIFGCGYNQRNPG-PKPPPTAGVLGLGLGKASILSQLQSLGLTRNVLGH 219 (335)
Q Consensus 141 ~~Y~~Gs~~~G~~~~D~v~~~~~~g~~~~~~~~Fg~~~~~~~~~-~~~~~~~GIlGLg~~~~s~~~ql~~~g~i~~~Fs~ 219 (335)
++|++|+.+.|.+++|+|+|+..+++..++++.|||+....+.+ ......+||||||+++.++++||+++++|+++||+
T Consensus 44 i~Ygd~~~~~G~~~~D~v~~~~~~~~~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ql~~~~~i~~~Fs~ 123 (273)
T cd05475 44 IEYADGGSSMGVLVTDIFSLKLTNGSRAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKISLPSQLASQGIIKNVIGH 123 (273)
T ss_pred eEeCCCCceEEEEEEEEEEEeecCCCcccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCCHHHHHHhcCCcCceEEE
Confidence 99998889999999999999765556678899999998765432 12356899999999999999999999988999999
Q ss_pred eeccCCCceEEeCCCCCCCCCcEEEeCccCCCCCceEEeeeEEEeCcEEccccCccEEEeccccceeeCHHHH
Q 019849 220 CLSVRGGGYLFLGHDLVPSSGIAWTPMSRDLLEKHYSSGPAELLFGGKSTGIKGLQIIFDSGSSYTYFNSQAY 292 (335)
Q Consensus 220 ~L~~~~~G~l~~G~~~~~~g~l~~~p~~~~~~~~~~~v~~~~i~v~g~~~~~~~~~~iiDSGTs~~~lp~~~~ 292 (335)
||++...|.|+||+..+..+++.|+|+.+++...+|.|++.+|+||++.....+..+||||||+++++|+++|
T Consensus 124 ~l~~~~~g~l~~G~~~~~~g~i~ytpl~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~ivDTGTt~t~lp~~~y 196 (273)
T cd05475 124 CLSSNGGGFLFFGDDLVPSSGVTWTPMRRESQKKHYSPGPASLLFNGQPTGGKGLEVVFDSGSSYTYFNAQAY 196 (273)
T ss_pred EccCCCCeEEEECCCCCCCCCeeecccccCCCCCeEEEeEeEEEECCEECcCCCceEEEECCCceEEcCCccc
Confidence 9998678999999766567889999998763336999999999999997665568899999999999999988
No 10
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=1.3e-40 Score=312.69 Aligned_cols=239 Identities=20% Similarity=0.289 Sum_probs=191.4
Q ss_pred CCCeeEEEEEEeCCCCcEEEEEEeCCCCceeEecCCCCC----CCCCCCCCCCCCCCCcccCCccccCCCCCCCCCCCCC
Q 019849 58 YPLGYYSVTLKIGNPPKLYELDIDTGSDLTWVQCNAPCT----GCTLPPESLYHPKNNLVACNDPFCSAFHLPENIRCEA 133 (335)
Q Consensus 58 ~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~c~----~C~~~~~~~y~p~~S~v~c~~~~C~~~~~~~~~~c~~ 133 (335)
+.+.+|+++|.||||||++.|+|||||+++||+|. .|. .|. .++.|+|++|+ +|+.
T Consensus 2 ~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~-~C~~~~~~C~--~~~~y~~~~Ss------T~~~----------- 61 (325)
T cd05490 2 YMDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSV-HCSLLDIACW--LHHKYNSSKSS------TYVK----------- 61 (325)
T ss_pred CcCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcC-CCCCCCcccc--CcCcCCcccCc------ceee-----------
Confidence 45789999999999999999999999999999998 897 354 56789999884 2211
Q ss_pred CCCCeeEEEeCCCCeEEEEEEEEEEEeeccCCCcCCCceEEEeeeecCCCCCCCCCcceEEeeCCCCC------chhhhh
Q 019849 134 NDQCDYEVLYADHGSSLGVLVTDHFPLRLTNGSLLGPRLIFGCGYNQRNPGPKPPPTAGVLGLGLGKA------SILSQL 207 (335)
Q Consensus 134 ~~~~~~~~~Y~~Gs~~~G~~~~D~v~~~~~~g~~~~~~~~Fg~~~~~~~~~~~~~~~~GIlGLg~~~~------s~~~ql 207 (335)
.+|.|.+.|++| ++.|.+++|+|+| |+..++++.|||++...+........+||||||++.. +++++|
T Consensus 62 -~~~~~~i~Yg~G-~~~G~~~~D~v~~----g~~~~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l 135 (325)
T cd05490 62 -NGTEFAIQYGSG-SLSGYLSQDTVSI----GGLQVEGQLFGEAVKQPGITFIAAKFDGILGMAYPRISVDGVTPVFDNI 135 (325)
T ss_pred -CCcEEEEEECCc-EEEEEEeeeEEEE----CCEEEcCEEEEEEeeccCCcccceeeeEEEecCCccccccCCCCHHHHH
Confidence 357999999999 6899999999999 5678899999999876553222346899999998753 467899
Q ss_pred hhcCCc-ceeeeeeeccC----CCceEEeCCCCC--CCCCcEEEeCccCCCCCceEEeeeEEEeCcEEcc-ccCccEEEe
Q 019849 208 QSLGLT-RNVLGHCLSVR----GGGYLFLGHDLV--PSSGIAWTPMSRDLLEKHYSSGPAELLFGGKSTG-IKGLQIIFD 279 (335)
Q Consensus 208 ~~~g~i-~~~Fs~~L~~~----~~G~l~~G~~~~--~~g~l~~~p~~~~~~~~~~~v~~~~i~v~g~~~~-~~~~~~iiD 279 (335)
+++|.| +++||+||.+. ..|+|+|||++. ..+++.|+|+... .+|.|++++|+||+.... ..+..+|||
T Consensus 136 ~~~g~i~~~~FS~~L~~~~~~~~~G~l~~Gg~d~~~~~g~l~~~~~~~~---~~w~v~l~~i~vg~~~~~~~~~~~aiiD 212 (325)
T cd05490 136 MAQKLVEQNVFSFYLNRDPDAQPGGELMLGGTDPKYYTGDLHYVNVTRK---AYWQIHMDQVDVGSGLTLCKGGCEAIVD 212 (325)
T ss_pred HhcCCCCCCEEEEEEeCCCCCCCCCEEEECccCHHHcCCceEEEEcCcc---eEEEEEeeEEEECCeeeecCCCCEEEEC
Confidence 999999 89999999842 369999999874 4689999998764 599999999999987433 234689999
Q ss_pred ccccceeeCHHHHHHHHHHHHHHhcCCCCCCCcCCCCcCccccc-Cccceeeee
Q 019849 280 SGSSYTYFNSQAYKTTLDLMRKDLKGKPLEDTAEEKALPVCWKG-TWKCLLGNF 332 (335)
Q Consensus 280 SGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~-~~~~~~~~f 332 (335)
|||+++++|++++++|.++|.+.- .. ...-...|.+. ..|.+.|+|
T Consensus 213 SGTt~~~~p~~~~~~l~~~~~~~~------~~-~~~~~~~C~~~~~~P~i~f~f 259 (325)
T cd05490 213 TGTSLITGPVEEVRALQKAIGAVP------LI-QGEYMIDCEKIPTLPVISFSL 259 (325)
T ss_pred CCCccccCCHHHHHHHHHHhCCcc------cc-CCCEEecccccccCCCEEEEE
Confidence 999999999999999998875321 11 11112369875 458888888
No 11
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=1.8e-40 Score=311.75 Aligned_cols=227 Identities=29% Similarity=0.506 Sum_probs=184.1
Q ss_pred eeEEEEEEeCCCCcEEEEEEeCCCCceeEecCCCCCCCCCCCCCCCCCCCC----cccCCccccCCCCCCCCCCCCCCCC
Q 019849 61 GYYSVTLKIGNPPKLYELDIDTGSDLTWVQCNAPCTGCTLPPESLYHPKNN----LVACNDPFCSAFHLPENIRCEANDQ 136 (335)
Q Consensus 61 ~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~c~~C~~~~~~~y~p~~S----~v~c~~~~C~~~~~~~~~~c~~~~~ 136 (335)
++|+++|+||||+|++.|+|||||+++||+|. .|..|..+.++.|+|++| .++|.+..|.. ...|.. +.
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~-~C~~c~~~~~~~y~~~~Sst~~~~~C~~~~c~~-----~~~~~~-~~ 74 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCS-QCKNCGIHMEPPYNLNNSITSSILYCDCNKCCY-----CLSCLN-NK 74 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecC-CCCCcCCCCCCCcCcccccccccccCCCccccc-----cCcCCC-Cc
Confidence 58999999999999999999999999999999 999998877899999998 37999999853 234533 67
Q ss_pred CeeEEEeCCCCeEEEEEEEEEEEeeccCCC---cCCCceEEEeeeecCCCCCCCCCcceEEeeCCCCCc----hhhhhhh
Q 019849 137 CDYEVLYADHGSSLGVLVTDHFPLRLTNGS---LLGPRLIFGCGYNQRNPGPKPPPTAGVLGLGLGKAS----ILSQLQS 209 (335)
Q Consensus 137 ~~~~~~Y~~Gs~~~G~~~~D~v~~~~~~g~---~~~~~~~Fg~~~~~~~~~~~~~~~~GIlGLg~~~~s----~~~ql~~ 209 (335)
|.|.+.|++|+.+.|.+++|+|+|+..... ....++.|||+....+.+. ....+||||||+...+ ...+|.+
T Consensus 75 ~~~~i~Y~~gs~~~G~~~~D~v~lg~~~~~~~~~~~~~~~fg~~~~~~~~~~-~~~~~GilGLg~~~~~~~~~~~~~l~~ 153 (326)
T cd06096 75 CEYSISYSEGSSISGFYFSDFVSFESYLNSNSEKESFKKIFGCHTHETNLFL-TQQATGILGLSLTKNNGLPTPIILLFT 153 (326)
T ss_pred CcEEEEECCCCceeeEEEEEEEEeccCCCCccccccccEEeccCccccCccc-ccccceEEEccCCcccccCchhHHHHH
Confidence 999999999988999999999999632110 0113578999988766443 3468999999998642 2234555
Q ss_pred cCCc-c--eeeeeeeccCCCceEEeCCCCCC--C----------CCcEEEeCccCCCCCceEEeeeEEEeCcEE---ccc
Q 019849 210 LGLT-R--NVLGHCLSVRGGGYLFLGHDLVP--S----------SGIAWTPMSRDLLEKHYSSGPAELLFGGKS---TGI 271 (335)
Q Consensus 210 ~g~i-~--~~Fs~~L~~~~~G~l~~G~~~~~--~----------g~l~~~p~~~~~~~~~~~v~~~~i~v~g~~---~~~ 271 (335)
++.+ . ++||+||++ ..|+|+||+++.. . +++.|+|+... .+|.|.+++|+++++. ...
T Consensus 154 ~~~~~~~~~~FS~~l~~-~~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~~---~~y~v~l~~i~vg~~~~~~~~~ 229 (326)
T cd06096 154 KRPKLKKDKIFSICLSE-DGGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITRK---YYYYVKLEGLSVYGTTSNSGNT 229 (326)
T ss_pred hcccccCCceEEEEEcC-CCeEEEECccChhhhcccccccccccCCceEEeccCC---ceEEEEEEEEEEcccccceecc
Confidence 6555 3 899999996 4799999998742 3 78999999865 4999999999999875 223
Q ss_pred cCccEEEeccccceeeCHHHHHHHHHHH
Q 019849 272 KGLQIIFDSGSSYTYFNSQAYKTTLDLM 299 (335)
Q Consensus 272 ~~~~~iiDSGTs~~~lp~~~~~~l~~~i 299 (335)
.+..++|||||++++||+++|++|.+++
T Consensus 230 ~~~~aivDSGTs~~~lp~~~~~~l~~~~ 257 (326)
T cd06096 230 KGLGMLVDSGSTLSHFPEDLYNKINNFF 257 (326)
T ss_pred cCCCEEEeCCCCcccCCHHHHHHHHhhc
Confidence 4688999999999999999999999888
No 12
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=1.3e-40 Score=311.52 Aligned_cols=232 Identities=19% Similarity=0.303 Sum_probs=189.0
Q ss_pred EEEEEEeCCCCcEEEEEEeCCCCceeEecCCCCC--CCCCCCCCCCCCCCCcccCCccccCCCCCCCCCCCCCCCCCeeE
Q 019849 63 YSVTLKIGNPPKLYELDIDTGSDLTWVQCNAPCT--GCTLPPESLYHPKNNLVACNDPFCSAFHLPENIRCEANDQCDYE 140 (335)
Q Consensus 63 Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~c~--~C~~~~~~~y~p~~S~v~c~~~~C~~~~~~~~~~c~~~~~~~~~ 140 (335)
|+++|+||||||+++|+|||||+++||+|. .|. .|. .++.|+|++|+ +|+ ..+|.|.
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~-~C~~~~C~--~~~~y~~~~Ss------T~~------------~~~~~~~ 59 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSI-YCTSQACT--KHNRFQPSESS------TYV------------SNGEAFS 59 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecC-CCCCcccC--ccceECCCCCc------ccc------------cCCcEEE
Confidence 789999999999999999999999999998 897 464 57889999884 222 1468999
Q ss_pred EEeCCCCeEEEEEEEEEEEeeccCCCcCCCceEEEeeeecCCCCCCCCCcceEEeeCCCCC------chhhhhhhcCCc-
Q 019849 141 VLYADHGSSLGVLVTDHFPLRLTNGSLLGPRLIFGCGYNQRNPGPKPPPTAGVLGLGLGKA------SILSQLQSLGLT- 213 (335)
Q Consensus 141 ~~Y~~Gs~~~G~~~~D~v~~~~~~g~~~~~~~~Fg~~~~~~~~~~~~~~~~GIlGLg~~~~------s~~~ql~~~g~i- 213 (335)
+.|++| .+.|.+++|+|+| ++..++++.|||+....+........+||||||++.. +++.+|++||+|
T Consensus 60 i~Yg~g-~~~G~~~~D~v~i----g~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~~~~l~~qg~i~ 134 (316)
T cd05486 60 IQYGTG-SLTGIIGIDQVTV----EGITVQNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPVFDNMMAQNLVE 134 (316)
T ss_pred EEeCCc-EEEEEeeecEEEE----CCEEEcCEEEEEeeccCcccccccccceEeccCchhhccCCCCCHHHHHHhcCCCC
Confidence 999999 6899999999999 5678899999998766543222356899999998754 357899999999
Q ss_pred ceeeeeeeccC----CCceEEeCCCCC--CCCCcEEEeCccCCCCCceEEeeeEEEeCcEEccc-cCccEEEecccccee
Q 019849 214 RNVLGHCLSVR----GGGYLFLGHDLV--PSSGIAWTPMSRDLLEKHYSSGPAELLFGGKSTGI-KGLQIIFDSGSSYTY 286 (335)
Q Consensus 214 ~~~Fs~~L~~~----~~G~l~~G~~~~--~~g~l~~~p~~~~~~~~~~~v~~~~i~v~g~~~~~-~~~~~iiDSGTs~~~ 286 (335)
+++||+||++. ..|+|+|||+|. ..|++.|+|+... .+|.|.+++|+|+++.+.. ....+||||||++++
T Consensus 135 ~~~FS~~L~~~~~~~~~g~l~fGg~d~~~~~g~l~~~pi~~~---~~w~v~l~~i~v~g~~~~~~~~~~aiiDTGTs~~~ 211 (316)
T cd05486 135 LPMFSVYMSRNPNSADGGELVFGGFDTSRFSGQLNWVPVTVQ---GYWQIQLDNIQVGGTVIFCSDGCQAIVDTGTSLIT 211 (316)
T ss_pred CCEEEEEEccCCCCCCCcEEEEcccCHHHcccceEEEECCCc---eEEEEEeeEEEEecceEecCCCCEEEECCCcchhh
Confidence 88999999842 479999999874 4689999999764 5999999999999987643 346899999999999
Q ss_pred eCHHHHHHHHHHHHHHhcCCCCCCCcCCCCc-Cccccc-Cccceeeee
Q 019849 287 FNSQAYKTTLDLMRKDLKGKPLEDTAEEKAL-PVCWKG-TWKCLLGNF 332 (335)
Q Consensus 287 lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~-~~C~~~-~~~~~~~~f 332 (335)
+|++++++|.+++.+... ...+ -.|.+. ..|.+.|+|
T Consensus 212 lP~~~~~~l~~~~~~~~~---------~~~~~~~C~~~~~~p~i~f~f 250 (316)
T cd05486 212 GPSGDIKQLQNYIGATAT---------DGEYGVDCSTLSLMPSVTFTI 250 (316)
T ss_pred cCHHHHHHHHHHhCCccc---------CCcEEEeccccccCCCEEEEE
Confidence 999999998877643211 1112 268875 469999998
No 13
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=4.9e-40 Score=309.18 Aligned_cols=242 Identities=20% Similarity=0.311 Sum_probs=195.0
Q ss_pred eeeeCCCCCeeEEEEEEeCCCCcEEEEEEeCCCCceeEecCCCCC----CCCCCCCCCCCCCCCcccCCccccCCCCCCC
Q 019849 52 PITGNVYPLGYYSVTLKIGNPPKLYELDIDTGSDLTWVQCNAPCT----GCTLPPESLYHPKNNLVACNDPFCSAFHLPE 127 (335)
Q Consensus 52 pl~~~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~c~----~C~~~~~~~y~p~~S~v~c~~~~C~~~~~~~ 127 (335)
||.+ +.+.+|+++|+||||+|++.|+|||||+++||+|. .|. .|. .++.|+|++|+ +|+.
T Consensus 3 ~~~n--~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~-~C~~~~~~c~--~~~~y~~~~Ss------t~~~----- 66 (329)
T cd05485 3 PLSN--YMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSK-KCSWTNIACL--LHNKYDSTKSS------TYKK----- 66 (329)
T ss_pred ccee--ccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecC-CCCCCCcccc--CCCeECCcCCC------CeEE-----
Confidence 4543 67789999999999999999999999999999998 897 454 46789998884 2221
Q ss_pred CCCCCCCCCCeeEEEeCCCCeEEEEEEEEEEEeeccCCCcCCCceEEEeeeecCCCCCCCCCcceEEeeCCCCCc-----
Q 019849 128 NIRCEANDQCDYEVLYADHGSSLGVLVTDHFPLRLTNGSLLGPRLIFGCGYNQRNPGPKPPPTAGVLGLGLGKAS----- 202 (335)
Q Consensus 128 ~~~c~~~~~~~~~~~Y~~Gs~~~G~~~~D~v~~~~~~g~~~~~~~~Fg~~~~~~~~~~~~~~~~GIlGLg~~~~s----- 202 (335)
.+|.|.+.|++| ++.|.+++|+|+| ++..++++.|||+....+........+||||||++..+
T Consensus 67 -------~~~~~~i~Y~~g-~~~G~~~~D~v~i----g~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~ 134 (329)
T cd05485 67 -------NGTEFAIQYGSG-SLSGFLSTDTVSV----GGVSVKGQTFAEAINEPGLTFVAAKFDGILGMGYSSISVDGVV 134 (329)
T ss_pred -------CCeEEEEEECCc-eEEEEEecCcEEE----CCEEECCEEEEEEEecCCccccccccceEEEcCCccccccCCC
Confidence 468999999999 5899999999999 56778899999998765432223568999999998654
Q ss_pred -hhhhhhhcCCc-ceeeeeeeccC----CCceEEeCCCCC--CCCCcEEEeCccCCCCCceEEeeeEEEeCcEEccccCc
Q 019849 203 -ILSQLQSLGLT-RNVLGHCLSVR----GGGYLFLGHDLV--PSSGIAWTPMSRDLLEKHYSSGPAELLFGGKSTGIKGL 274 (335)
Q Consensus 203 -~~~ql~~~g~i-~~~Fs~~L~~~----~~G~l~~G~~~~--~~g~l~~~p~~~~~~~~~~~v~~~~i~v~g~~~~~~~~ 274 (335)
++.||+++|+| +++||+||.+. ..|+|+|||++. ..|++.|+|+... .+|.|.+++++++++.+...+.
T Consensus 135 p~~~~l~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~---~~~~v~~~~i~v~~~~~~~~~~ 211 (329)
T cd05485 135 PVFYNMVNQKLVDAPVFSFYLNRDPSAKEGGELILGGSDPKHYTGNFTYLPVTRK---GYWQFKMDSVSVGEGEFCSGGC 211 (329)
T ss_pred CHHHHHHhCCCCCCCEEEEEecCCCCCCCCcEEEEcccCHHHcccceEEEEcCCc---eEEEEEeeEEEECCeeecCCCc
Confidence 56899999999 89999999842 469999999874 3689999999764 5999999999999988765567
Q ss_pred cEEEeccccceeeCHHHHHHHHHHHHHHhcCCCCCCCcCCCCc-CcccccC-ccceeeee
Q 019849 275 QIIFDSGSSYTYFNSQAYKTTLDLMRKDLKGKPLEDTAEEKAL-PVCWKGT-WKCLLGNF 332 (335)
Q Consensus 275 ~~iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~-~~C~~~~-~~~~~~~f 332 (335)
.+||||||+++++|++++++|.+++... .+. ...+ -.|.... .|.+.|+|
T Consensus 212 ~~iiDSGtt~~~lP~~~~~~l~~~~~~~----~~~----~~~~~~~C~~~~~~p~i~f~f 263 (329)
T cd05485 212 QAIADTGTSLIAGPVDEIEKLNNAIGAK----PII----GGEYMVNCSAIPSLPDITFVL 263 (329)
T ss_pred EEEEccCCcceeCCHHHHHHHHHHhCCc----ccc----CCcEEEeccccccCCcEEEEE
Confidence 8999999999999999999988877532 111 1112 3687654 48898888
No 14
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=1.1e-39 Score=305.40 Aligned_cols=227 Identities=23% Similarity=0.316 Sum_probs=185.3
Q ss_pred CCCeeEEEEEEeCCCCcEEEEEEeCCCCceeEecCCCCC---CCCCCCCCCCCCCCCcccCCccccCCCCCCCCCCCCCC
Q 019849 58 YPLGYYSVTLKIGNPPKLYELDIDTGSDLTWVQCNAPCT---GCTLPPESLYHPKNNLVACNDPFCSAFHLPENIRCEAN 134 (335)
Q Consensus 58 ~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~c~---~C~~~~~~~y~p~~S~v~c~~~~C~~~~~~~~~~c~~~ 134 (335)
+.+.+|+++|+||||||++.|+|||||+++||+|. .|. .|. .++.|+|++|+ +|+.
T Consensus 6 ~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~-~C~~~~~C~--~~~~y~~~~Ss------T~~~------------ 64 (317)
T cd06098 6 YLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSS-KCYFSIACY--FHSKYKSSKSS------TYKK------------ 64 (317)
T ss_pred cCCCEEEEEEEECCCCeEEEEEECCCccceEEecC-CCCCCcccc--ccCcCCcccCC------Cccc------------
Confidence 67889999999999999999999999999999998 895 676 46789999884 2221
Q ss_pred CCCeeEEEeCCCCeEEEEEEEEEEEeeccCCCcCCCceEEEeeeecCCCCCCCCCcceEEeeCCCCC------chhhhhh
Q 019849 135 DQCDYEVLYADHGSSLGVLVTDHFPLRLTNGSLLGPRLIFGCGYNQRNPGPKPPPTAGVLGLGLGKA------SILSQLQ 208 (335)
Q Consensus 135 ~~~~~~~~Y~~Gs~~~G~~~~D~v~~~~~~g~~~~~~~~Fg~~~~~~~~~~~~~~~~GIlGLg~~~~------s~~~ql~ 208 (335)
.+..+.+.|++| .+.|.+++|+|+| |+..++++.||+++............+||||||++.. +++.+|+
T Consensus 65 ~~~~~~i~Yg~G-~~~G~~~~D~v~i----g~~~v~~~~f~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~ 139 (317)
T cd06098 65 NGTSASIQYGTG-SISGFFSQDSVTV----GDLVVKNQVFIEATKEPGLTFLLAKFDGILGLGFQEISVGKAVPVWYNMV 139 (317)
T ss_pred CCCEEEEEcCCc-eEEEEEEeeEEEE----CCEEECCEEEEEEEecCCccccccccceeccccccchhhcCCCCHHHHHH
Confidence 346889999999 6899999999999 5678899999999876543222356899999998753 4567899
Q ss_pred hcCCc-ceeeeeeeccC----CCceEEeCCCCC--CCCCcEEEeCccCCCCCceEEeeeEEEeCcEEccc--cCccEEEe
Q 019849 209 SLGLT-RNVLGHCLSVR----GGGYLFLGHDLV--PSSGIAWTPMSRDLLEKHYSSGPAELLFGGKSTGI--KGLQIIFD 279 (335)
Q Consensus 209 ~~g~i-~~~Fs~~L~~~----~~G~l~~G~~~~--~~g~l~~~p~~~~~~~~~~~v~~~~i~v~g~~~~~--~~~~~iiD 279 (335)
++|+| +++||+||.+. ..|.|+||++|. ..|++.|+|+... .+|.|.+++|+||++.+.. ....+|||
T Consensus 140 ~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~g~l~~~pv~~~---~~w~v~l~~i~v~g~~~~~~~~~~~aivD 216 (317)
T cd06098 140 EQGLVKEPVFSFWLNRNPDEEEGGELVFGGVDPKHFKGEHTYVPVTRK---GYWQFEMGDVLIGGKSTGFCAGGCAAIAD 216 (317)
T ss_pred hcCCCCCCEEEEEEecCCCCCCCcEEEECccChhhcccceEEEecCcC---cEEEEEeCeEEECCEEeeecCCCcEEEEe
Confidence 99999 88999999742 479999999874 4699999999764 5999999999999987643 34689999
Q ss_pred ccccceeeCHHHHHHHHHHHHHHhcCCCCCCCcCCCCcCccccc-Cccceeeee
Q 019849 280 SGSSYTYFNSQAYKTTLDLMRKDLKGKPLEDTAEEKALPVCWKG-TWKCLLGNF 332 (335)
Q Consensus 280 SGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~-~~~~~~~~f 332 (335)
|||+++++|++++++|. . .-.|++. ..|.+.|+|
T Consensus 217 TGTs~~~lP~~~~~~i~---------~----------~~~C~~~~~~P~i~f~f 251 (317)
T cd06098 217 SGTSLLAGPTTIVTQIN---------S----------AVDCNSLSSMPNVSFTI 251 (317)
T ss_pred cCCcceeCCHHHHHhhh---------c----------cCCccccccCCcEEEEE
Confidence 99999999999877664 1 1137764 458888887
No 15
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=8.7e-40 Score=316.87 Aligned_cols=248 Identities=17% Similarity=0.193 Sum_probs=194.7
Q ss_pred CCceeeeeeeCCCCCeeEEEEEEeCCCCcEEEEEEeCCCCceeEecCCCCCCCCCCCCCCCCCCCCcccCCccccCCCCC
Q 019849 46 GSTAVFPITGNVYPLGYYSVTLKIGNPPKLYELDIDTGSDLTWVQCNAPCTGCTLPPESLYHPKNNLVACNDPFCSAFHL 125 (335)
Q Consensus 46 ~s~~~~pl~~~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~c~~C~~~~~~~y~p~~S~v~c~~~~C~~~~~ 125 (335)
.....+||. ++.+.+|+++|+||||||++.|+|||||+++||+|. .|..|....++.|+|++|+ +|+.
T Consensus 125 ~~~~~v~L~--n~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~-~C~~~~C~~~~~yd~s~Ss------T~~~--- 192 (453)
T PTZ00147 125 SEFDNVELK--DLANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSI-KCTTEGCETKNLYDSSKSK------TYEK--- 192 (453)
T ss_pred CCCCeeecc--ccCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeec-CCCcccccCCCccCCccCc------ceEE---
Confidence 334567775 356789999999999999999999999999999999 8985554567899999884 2221
Q ss_pred CCCCCCCCCCCCeeEEEeCCCCeEEEEEEEEEEEeeccCCCcCCCceEEEeeeecCCC--CCCCCCcceEEeeCCCCC--
Q 019849 126 PENIRCEANDQCDYEVLYADHGSSLGVLVTDHFPLRLTNGSLLGPRLIFGCGYNQRNP--GPKPPPTAGVLGLGLGKA-- 201 (335)
Q Consensus 126 ~~~~~c~~~~~~~~~~~Y~~Gs~~~G~~~~D~v~~~~~~g~~~~~~~~Fg~~~~~~~~--~~~~~~~~GIlGLg~~~~-- 201 (335)
.++.|.+.|++| .+.|.+++|+|+| |+..++ ..|+++.+..+. .......|||||||++..
T Consensus 193 ---------~~~~f~i~Yg~G-svsG~~~~DtVti----G~~~v~-~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~S~ 257 (453)
T PTZ00147 193 ---------DGTKVEMNYVSG-TVSGFFSKDLVTI----GNLSVP-YKFIEVTDTNGFEPFYTESDFDGIFGLGWKDLSI 257 (453)
T ss_pred ---------CCCEEEEEeCCC-CEEEEEEEEEEEE----CCEEEE-EEEEEEEeccCcccccccccccceecccCCcccc
Confidence 457999999999 6999999999999 566666 579988765442 112346899999999864
Q ss_pred ----chhhhhhhcCCc-ceeeeeeecc--CCCceEEeCCCCC--CCCCcEEEeCccCCCCCceEEeeeEEEeCcEEcccc
Q 019849 202 ----SILSQLQSLGLT-RNVLGHCLSV--RGGGYLFLGHDLV--PSSGIAWTPMSRDLLEKHYSSGPAELLFGGKSTGIK 272 (335)
Q Consensus 202 ----s~~~ql~~~g~i-~~~Fs~~L~~--~~~G~l~~G~~~~--~~g~l~~~p~~~~~~~~~~~v~~~~i~v~g~~~~~~ 272 (335)
+++.+|++||+| +++||+||++ ...|.|+|||+|. ..|++.|+|+... .+|.|.++ +.+++... .
T Consensus 258 ~~~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~ky~G~l~y~pl~~~---~~W~V~l~-~~vg~~~~--~ 331 (453)
T PTZ00147 258 GSVDPYVVELKNQNKIEQAVFTFYLPPEDKHKGYLTIGGIEERFYEGPLTYEKLNHD---LYWQVDLD-VHFGNVSS--E 331 (453)
T ss_pred ccCCCHHHHHHHcCCCCccEEEEEecCCCCCCeEEEECCcChhhcCCceEEEEcCCC---ceEEEEEE-EEECCEec--C
Confidence 467799999999 8899999984 3579999999974 3799999999754 59999998 57776543 4
Q ss_pred CccEEEeccccceeeCHHHHHHHHHHHHHHhcCCCCCCCcCCCCcCcccccCccceeeee
Q 019849 273 GLQIIFDSGSSYTYFNSQAYKTTLDLMRKDLKGKPLEDTAEEKALPVCWKGTWKCLLGNF 332 (335)
Q Consensus 273 ~~~~iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~f 332 (335)
+..+||||||+++++|+++++++.+++.+... +.. ..-...|++...|.+.|+|
T Consensus 332 ~~~aIiDSGTsli~lP~~~~~ai~~~l~~~~~----~~~--~~y~~~C~~~~lP~~~f~f 385 (453)
T PTZ00147 332 KANVIVDSGTSVITVPTEFLNKFVESLDVFKV----PFL--PLYVTTCNNTKLPTLEFRS 385 (453)
T ss_pred ceeEEECCCCchhcCCHHHHHHHHHHhCCeec----CCC--CeEEEeCCCCCCCeEEEEE
Confidence 57899999999999999999999988753211 111 1112469987789888887
No 16
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=7e-39 Score=301.00 Aligned_cols=239 Identities=18% Similarity=0.278 Sum_probs=189.8
Q ss_pred CCCeeEEEEEEeCCCCcEEEEEEeCCCCceeEecCCCCCCC--CCCCCCCCCCCCCcccCCccccCCCCCCCCCCCCCCC
Q 019849 58 YPLGYYSVTLKIGNPPKLYELDIDTGSDLTWVQCNAPCTGC--TLPPESLYHPKNNLVACNDPFCSAFHLPENIRCEAND 135 (335)
Q Consensus 58 ~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~c~~C--~~~~~~~y~p~~S~v~c~~~~C~~~~~~~~~~c~~~~ 135 (335)
+.+..|+++|+||||+|+++|+|||||+++||++. .|..| ....++.|+|++|+ +|+. .
T Consensus 4 ~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~-~C~~~~~~c~~~~~y~~~~Ss------T~~~------------~ 64 (326)
T cd05487 4 YLDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSS-KCSPLYTACVTHNLYDASDSS------TYKE------------N 64 (326)
T ss_pred cCCCeEEEEEEECCCCcEEEEEEeCCccceEEccC-CCcCcchhhcccCcCCCCCCe------eeeE------------C
Confidence 56789999999999999999999999999999998 88753 22357889999884 2322 4
Q ss_pred CCeeEEEeCCCCeEEEEEEEEEEEeeccCCCcCCCceEEEeeeecCCCCCCCCCcceEEeeCCCCC------chhhhhhh
Q 019849 136 QCDYEVLYADHGSSLGVLVTDHFPLRLTNGSLLGPRLIFGCGYNQRNPGPKPPPTAGVLGLGLGKA------SILSQLQS 209 (335)
Q Consensus 136 ~~~~~~~Y~~Gs~~~G~~~~D~v~~~~~~g~~~~~~~~Fg~~~~~~~~~~~~~~~~GIlGLg~~~~------s~~~ql~~ 209 (335)
+|.|.+.|++| .+.|.+++|+|+| ++..+ ++.||++.............+||||||++.. +++.+|++
T Consensus 65 ~~~~~~~Yg~g-~~~G~~~~D~v~~----g~~~~-~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~ 138 (326)
T cd05487 65 GTEFTIHYASG-TVKGFLSQDIVTV----GGIPV-TQMFGEVTALPAIPFMLAKFDGVLGMGYPKQAIGGVTPVFDNIMS 138 (326)
T ss_pred CEEEEEEeCCc-eEEEEEeeeEEEE----CCEEe-eEEEEEEEeccCCccceeecceEEecCChhhcccCCCCHHHHHHh
Confidence 68999999999 6999999999999 45445 4789998875431111245899999998753 56788999
Q ss_pred cCCc-ceeeeeeecc----CCCceEEeCCCCC--CCCCcEEEeCccCCCCCceEEeeeEEEeCcEEccc-cCccEEEecc
Q 019849 210 LGLT-RNVLGHCLSV----RGGGYLFLGHDLV--PSSGIAWTPMSRDLLEKHYSSGPAELLFGGKSTGI-KGLQIIFDSG 281 (335)
Q Consensus 210 ~g~i-~~~Fs~~L~~----~~~G~l~~G~~~~--~~g~l~~~p~~~~~~~~~~~v~~~~i~v~g~~~~~-~~~~~iiDSG 281 (335)
||.| +++||+||.+ ...|+|+||++|. ..|++.|+|+... .+|.|.+++|+++++.+.. .+..++||||
T Consensus 139 qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~y~g~l~~~~~~~~---~~w~v~l~~i~vg~~~~~~~~~~~aiiDSG 215 (326)
T cd05487 139 QGVLKEDVFSVYYSRDSSHSLGGEIVLGGSDPQHYQGDFHYINTSKT---GFWQIQMKGVSVGSSTLLCEDGCTAVVDTG 215 (326)
T ss_pred cCCCCCCEEEEEEeCCCCCCCCcEEEECCcChhhccCceEEEECCcC---ceEEEEecEEEECCEEEecCCCCEEEECCC
Confidence 9999 8999999984 3479999999974 4789999998754 5999999999999988754 3468999999
Q ss_pred ccceeeCHHHHHHHHHHHHHHhcCCCCCCCcCCCCcCcccccC-ccceeeee
Q 019849 282 SSYTYFNSQAYKTTLDLMRKDLKGKPLEDTAEEKALPVCWKGT-WKCLLGNF 332 (335)
Q Consensus 282 Ts~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~-~~~~~~~f 332 (335)
|+++++|+++++++++++.+... . ..-.-.|.... .|.+.|+|
T Consensus 216 ts~~~lP~~~~~~l~~~~~~~~~-----~---~~y~~~C~~~~~~P~i~f~f 259 (326)
T cd05487 216 ASFISGPTSSISKLMEALGAKER-----L---GDYVVKCNEVPTLPDISFHL 259 (326)
T ss_pred ccchhCcHHHHHHHHHHhCCccc-----C---CCEEEeccccCCCCCEEEEE
Confidence 99999999999999888853322 0 01123588754 58899988
No 17
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=1.1e-38 Score=302.81 Aligned_cols=251 Identities=21% Similarity=0.319 Sum_probs=194.7
Q ss_pred eCCCCcE-EEEEEeCCCCceeEecCCCCCCCCCCCCCCCCCCCCcccCCccccCCCCCCCC---------CCCCCCCCCe
Q 019849 69 IGNPPKL-YELDIDTGSDLTWVQCNAPCTGCTLPPESLYHPKNNLVACNDPFCSAFHLPEN---------IRCEANDQCD 138 (335)
Q Consensus 69 iGtP~q~-~~v~~DTGSs~~Wv~~~~~c~~C~~~~~~~y~p~~S~v~c~~~~C~~~~~~~~---------~~c~~~~~~~ 138 (335)
+|||-.+ +.|+|||||+++||+|. +|. ...|. .++|.++.|+....++. ..|.. +.|.
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~-~~~------sst~~----~~~C~s~~C~~~~~~~~~~~~~~~~~~~c~~-~~C~ 69 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCD-AGH------SSTYQ----TVPCSSSVCSLANRYHCPGTCGGAPGPGCGN-NTCT 69 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCC-CCC------cCCCC----ccCcCChhhccccccCCCccccCCCCCCCCC-CcCe
Confidence 5888877 99999999999999997 542 12332 38999999987665422 24533 4588
Q ss_pred eEEE-eCCCCeEEEEEEEEEEEeeccCCC----cCCCceEEEeeeecCCCCCCCCCcceEEeeCCCCCchhhhhhhcCCc
Q 019849 139 YEVL-YADHGSSLGVLVTDHFPLRLTNGS----LLGPRLIFGCGYNQRNPGPKPPPTAGVLGLGLGKASILSQLQSLGLT 213 (335)
Q Consensus 139 ~~~~-Y~~Gs~~~G~~~~D~v~~~~~~g~----~~~~~~~Fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~g~i 213 (335)
|... |++|+...|.+++|+|+|+..+++ ..++++.|||+.+...... ...+|||||||++++|++.||..++.+
T Consensus 70 y~~~~y~~gs~t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~-~~~~dGIlGLg~~~lSl~sql~~~~~~ 148 (362)
T cd05489 70 AHPYNPVTGECATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKGL-PPGAQGVAGLGRSPLSLPAQLASAFGV 148 (362)
T ss_pred eEccccccCcEeeEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccCC-ccccccccccCCCccchHHHhhhhcCC
Confidence 8665 778989999999999999765443 2688999999987532111 234899999999999999999887656
Q ss_pred ceeeeeeecc--CCCceEEeCCCCCC--------CCCcEEEeCccCCC-CCceEEeeeEEEeCcEEcccc----------
Q 019849 214 RNVLGHCLSV--RGGGYLFLGHDLVP--------SSGIAWTPMSRDLL-EKHYSSGPAELLFGGKSTGIK---------- 272 (335)
Q Consensus 214 ~~~Fs~~L~~--~~~G~l~~G~~~~~--------~g~l~~~p~~~~~~-~~~~~v~~~~i~v~g~~~~~~---------- 272 (335)
+++||+||.+ ...|.|+||+.+.. .+++.|+||+.++. +.+|.|++++|+||++++.+.
T Consensus 149 ~~~FS~CL~~~~~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~~~~~~~~~~~ 228 (362)
T cd05489 149 ARKFALCLPSSPGGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLNPTLSANDRLG 228 (362)
T ss_pred CcceEEEeCCCCCCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEECCCCchhccccccC
Confidence 8999999985 35799999987631 37899999997642 369999999999999988642
Q ss_pred CccEEEeccccceeeCHHHHHHHHHHHHHHhcCCCCCCCcCCCCcCccccc----------Cccceeeeee
Q 019849 273 GLQIIFDSGSSYTYFNSQAYKTTLDLMRKDLKGKPLEDTAEEKALPVCWKG----------TWKCLLGNFE 333 (335)
Q Consensus 273 ~~~~iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~----------~~~~~~~~f~ 333 (335)
...+||||||++++||+++|++|.++|.+++...+.... ....++.||+. ..|.|+|||.
T Consensus 229 ~~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~~~~~~~-~~~~~~~C~~~~~~~~~~~~~~~P~it~~f~ 298 (362)
T cd05489 229 PGGVKLSTVVPYTVLRSDIYRAFTQAFAKATARIPRVPA-AAVFPELCYPASALGNTRLGYAVPAIDLVLD 298 (362)
T ss_pred CCcEEEecCCceEEECHHHHHHHHHHHHHHhcccCcCCC-CCCCcCccccCCCcCCcccccccceEEEEEe
Confidence 358999999999999999999999999999875433222 11123799974 3488999994
No 18
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=1.5e-38 Score=307.73 Aligned_cols=247 Identities=18% Similarity=0.220 Sum_probs=190.2
Q ss_pred CceeeeeeeCCCCCeeEEEEEEeCCCCcEEEEEEeCCCCceeEecCCCCCCCCCCCCCCCCCCCCcccCCccccCCCCCC
Q 019849 47 STAVFPITGNVYPLGYYSVTLKIGNPPKLYELDIDTGSDLTWVQCNAPCTGCTLPPESLYHPKNNLVACNDPFCSAFHLP 126 (335)
Q Consensus 47 s~~~~pl~~~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~c~~C~~~~~~~y~p~~S~v~c~~~~C~~~~~~ 126 (335)
..-.+|+.+ +.+.+|+++|+||||+|++.|+|||||+++||+|. .|..+....++.|+|++|+ +|+.
T Consensus 125 ~~~~~~l~d--~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~-~C~~~~C~~~~~yd~s~Ss------T~~~---- 191 (450)
T PTZ00013 125 ENDVIELDD--VANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSK-KCDSIGCSIKNLYDSSKSK------SYEK---- 191 (450)
T ss_pred CCCceeeec--cCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecc-cCCccccccCCCccCccCc------cccc----
Confidence 334566652 55779999999999999999999999999999999 8974333367889998874 2221
Q ss_pred CCCCCCCCCCCeeEEEeCCCCeEEEEEEEEEEEeeccCCCcCCCceEEEeeeecCCC--CCCCCCcceEEeeCCCCC---
Q 019849 127 ENIRCEANDQCDYEVLYADHGSSLGVLVTDHFPLRLTNGSLLGPRLIFGCGYNQRNP--GPKPPPTAGVLGLGLGKA--- 201 (335)
Q Consensus 127 ~~~~c~~~~~~~~~~~Y~~Gs~~~G~~~~D~v~~~~~~g~~~~~~~~Fg~~~~~~~~--~~~~~~~~GIlGLg~~~~--- 201 (335)
.+|.|.+.|++| ++.|.+++|+|+| |+..++ .+|+++.+.... ......+|||||||++..
T Consensus 192 --------~~~~~~i~YG~G-sv~G~~~~Dtv~i----G~~~~~-~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~ 257 (450)
T PTZ00013 192 --------DGTKVDITYGSG-TVKGFFSKDLVTL----GHLSMP-YKFIEVTDTDDLEPIYSSSEFDGILGLGWKDLSIG 257 (450)
T ss_pred --------CCcEEEEEECCc-eEEEEEEEEEEEE----CCEEEc-cEEEEEEeccccccceecccccceecccCCccccc
Confidence 467999999999 6999999999999 555665 588888765321 111245899999998754
Q ss_pred ---chhhhhhhcCCc-ceeeeeeecc--CCCceEEeCCCCC--CCCCcEEEeCccCCCCCceEEeeeEEEeCcEEccccC
Q 019849 202 ---SILSQLQSLGLT-RNVLGHCLSV--RGGGYLFLGHDLV--PSSGIAWTPMSRDLLEKHYSSGPAELLFGGKSTGIKG 273 (335)
Q Consensus 202 ---s~~~ql~~~g~i-~~~Fs~~L~~--~~~G~l~~G~~~~--~~g~l~~~p~~~~~~~~~~~v~~~~i~v~g~~~~~~~ 273 (335)
+++.+|++||+| +++||+||++ ...|.|+|||+|. ..|++.|+|+... .+|.|.++ +.+|.... .+
T Consensus 258 ~~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~~y~G~L~y~pv~~~---~yW~I~l~-v~~G~~~~--~~ 331 (450)
T PTZ00013 258 SIDPIVVELKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEEKFYEGNITYEKLNHD---LYWQIDLD-VHFGKQTM--QK 331 (450)
T ss_pred cCCCHHHHHHhccCcCCcEEEEEecCCCCCCCEEEECCcCccccccceEEEEcCcC---ceEEEEEE-EEECceec--cc
Confidence 577899999999 8899999984 3589999999975 3699999999754 59999998 67765543 35
Q ss_pred ccEEEeccccceeeCHHHHHHHHHHHHHHhcCCCCCCCcCCCCcCcccccCccceeeee
Q 019849 274 LQIIFDSGSSYTYFNSQAYKTTLDLMRKDLKGKPLEDTAEEKALPVCWKGTWKCLLGNF 332 (335)
Q Consensus 274 ~~~iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~f 332 (335)
..+||||||+++++|+++++++.+.+..... +.. ..-...|+....|.+.|+|
T Consensus 332 ~~aIlDSGTSli~lP~~~~~~i~~~l~~~~~----~~~--~~y~~~C~~~~lP~i~F~~ 384 (450)
T PTZ00013 332 ANVIVDSGTTTITAPSEFLNKFFANLNVIKV----PFL--PFYVTTCDNKEMPTLEFKS 384 (450)
T ss_pred cceEECCCCccccCCHHHHHHHHHHhCCeec----CCC--CeEEeecCCCCCCeEEEEE
Confidence 7899999999999999999988887753211 111 1113469887789888887
No 19
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=2.5e-38 Score=301.61 Aligned_cols=242 Identities=19% Similarity=0.201 Sum_probs=182.5
Q ss_pred eEEEEEEeCCCCcEEEEEEeCCCCceeEecCCCCCCCCCCCCCCCCCCCCcccCCccccCCCCCCCCCCCCCCCCCeeEE
Q 019849 62 YYSVTLKIGNPPKLYELDIDTGSDLTWVQCNAPCTGCTLPPESLYHPKNNLVACNDPFCSAFHLPENIRCEANDQCDYEV 141 (335)
Q Consensus 62 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~c~~C~~~~~~~y~p~~S~v~c~~~~C~~~~~~~~~~c~~~~~~~~~~ 141 (335)
.|+++|.||||+|++.|+|||||+++||+|. +|.. .++.|+|++|+ +|+. .+|.|.+
T Consensus 3 ~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~-~~~~----~~~~f~~~~Ss------T~~~------------~~~~~~i 59 (364)
T cd05473 3 GYYIEMLIGTPPQKLNILVDTGSSNFAVAAA-PHPF----IHTYFHRELSS------TYRD------------LGKGVTV 59 (364)
T ss_pred ceEEEEEecCCCceEEEEEecCCcceEEEcC-CCcc----ccccCCchhCc------Cccc------------CCceEEE
Confidence 6999999999999999999999999999998 7743 36789999884 2221 4689999
Q ss_pred EeCCCCeEEEEEEEEEEEeeccCCCcCCCceEEEeeeecCCCCCCCCCcceEEeeCCCCC--------chhhhhhhcCCc
Q 019849 142 LYADHGSSLGVLVTDHFPLRLTNGSLLGPRLIFGCGYNQRNPGPKPPPTAGVLGLGLGKA--------SILSQLQSLGLT 213 (335)
Q Consensus 142 ~Y~~Gs~~~G~~~~D~v~~~~~~g~~~~~~~~Fg~~~~~~~~~~~~~~~~GIlGLg~~~~--------s~~~ql~~~g~i 213 (335)
.|++| ++.|.+++|+|+|++ +......+.|+++....+.+......|||||||++.+ +++.+|.+|+.+
T Consensus 60 ~Yg~G-s~~G~~~~D~v~ig~--~~~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~~~~~~~~~~l~~q~~~ 136 (364)
T cd05473 60 PYTQG-SWEGELGTDLVSIPK--GPNVTFRANIAAITESENFFLNGSNWEGILGLAYAELARPDSSVEPFFDSLVKQTGI 136 (364)
T ss_pred EECcc-eEEEEEEEEEEEECC--CCccceEEeeEEEeccccceecccccceeeeecccccccCCCCCCCHHHHHHhccCC
Confidence 99999 689999999999952 1111112335566554443322235799999998754 467799999888
Q ss_pred ceeeeeeecc-----------CCCceEEeCCCCC--CCCCcEEEeCccCCCCCceEEeeeEEEeCcEEcccc-----Ccc
Q 019849 214 RNVLGHCLSV-----------RGGGYLFLGHDLV--PSSGIAWTPMSRDLLEKHYSSGPAELLFGGKSTGIK-----GLQ 275 (335)
Q Consensus 214 ~~~Fs~~L~~-----------~~~G~l~~G~~~~--~~g~l~~~p~~~~~~~~~~~v~~~~i~v~g~~~~~~-----~~~ 275 (335)
.++||+||.. ...|.|+||++|. ..|++.|+|+... .+|.|.+++|+|+++.+... ...
T Consensus 137 ~~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~~~---~~~~v~l~~i~vg~~~~~~~~~~~~~~~ 213 (364)
T cd05473 137 PDVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDPSLYKGDIWYTPIREE---WYYEVIILKLEVGGQSLNLDCKEYNYDK 213 (364)
T ss_pred ccceEEEecccccccccccccCCCcEEEeCCcCHhhcCCCceEEecCcc---eeEEEEEEEEEECCEecccccccccCcc
Confidence 8899998741 2379999999874 4789999999865 59999999999999987542 146
Q ss_pred EEEeccccceeeCHHHHHHHHHHHHHHhcCCCCCCCcCCCCcCcccccC------ccceeeee
Q 019849 276 IIFDSGSSYTYFNSQAYKTTLDLMRKDLKGKPLEDTAEEKALPVCWKGT------WKCLLGNF 332 (335)
Q Consensus 276 ~iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~------~~~~~~~f 332 (335)
+||||||+++++|+++|++|.++|.++......+..........|++.. .|.+.++|
T Consensus 214 ~ivDSGTs~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f 276 (364)
T cd05473 214 AIVDSGTTNLRLPVKVFNAAVDAIKAASLIEDFPDGFWLGSQLACWQKGTTPWEIFPKISIYL 276 (364)
T ss_pred EEEeCCCcceeCCHHHHHHHHHHHHhhcccccCCccccCcceeecccccCchHhhCCcEEEEE
Confidence 9999999999999999999999999876532221110001123699743 48899988
No 20
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=5.4e-38 Score=288.10 Aligned_cols=240 Identities=28% Similarity=0.461 Sum_probs=193.3
Q ss_pred EEEEEEeCCCCcEEEEEEeCCCCceeEecCCCCCCCCCCCCCC--CCCCCCcccCCccccCCCCCCCCCCCCCCCCCeeE
Q 019849 63 YSVTLKIGNPPKLYELDIDTGSDLTWVQCNAPCTGCTLPPESL--YHPKNNLVACNDPFCSAFHLPENIRCEANDQCDYE 140 (335)
Q Consensus 63 Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~c~~C~~~~~~~--y~p~~S~v~c~~~~C~~~~~~~~~~c~~~~~~~~~ 140 (335)
|+++|.||||+|++.|+|||||+++||+|. .|..|....... |++..|. +.....|.|.
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~-~c~~~~~~~~~~~~~~~~~s~------------------~~~~~~~~~~ 61 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSS-NCTSCSCQKHPRFKYDSSKSS------------------TYKDTGCTFS 61 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecC-CCCccccccCCCCccCccCCc------------------eeecCCCEEE
Confidence 789999999999999999999999999999 898886544443 4444331 1123678999
Q ss_pred EEeCCCCeEEEEEEEEEEEeeccCCCcCCCceEEEeeeecCCCCCCCCCcceEEeeCCCC------CchhhhhhhcCCc-
Q 019849 141 VLYADHGSSLGVLVTDHFPLRLTNGSLLGPRLIFGCGYNQRNPGPKPPPTAGVLGLGLGK------ASILSQLQSLGLT- 213 (335)
Q Consensus 141 ~~Y~~Gs~~~G~~~~D~v~~~~~~g~~~~~~~~Fg~~~~~~~~~~~~~~~~GIlGLg~~~------~s~~~ql~~~g~i- 213 (335)
+.|++| .+.|.+++|+|+| ++..++++.|||++....... ....+||||||+.. .+++.||.+++.|
T Consensus 62 ~~Y~~g-~~~g~~~~D~v~~----~~~~~~~~~fg~~~~~~~~~~-~~~~~GilGLg~~~~~~~~~~s~~~~l~~~~~i~ 135 (283)
T cd05471 62 ITYGDG-SVTGGLGTDTVTI----GGLTIPNQTFGCATSESGDFS-SSGFDGILGLGFPSLSVDGVPSFFDQLKSQGLIS 135 (283)
T ss_pred EEECCC-eEEEEEEEeEEEE----CCEEEeceEEEEEeccCCccc-ccccceEeecCCcccccccCCCHHHHHHHCCCCC
Confidence 999998 8999999999999 455688999999998764221 35789999999998 8999999999998
Q ss_pred ceeeeeeecc----CCCceEEeCCCCCC--CCCcEEEeCccCCCCCceEEeeeEEEeCcE--EccccCccEEEeccccce
Q 019849 214 RNVLGHCLSV----RGGGYLFLGHDLVP--SSGIAWTPMSRDLLEKHYSSGPAELLFGGK--STGIKGLQIIFDSGSSYT 285 (335)
Q Consensus 214 ~~~Fs~~L~~----~~~G~l~~G~~~~~--~g~l~~~p~~~~~~~~~~~v~~~~i~v~g~--~~~~~~~~~iiDSGTs~~ 285 (335)
+++||+||.+ ...|.|+||+++.. .+++.|+|+.... ..+|.|.+++|.+++. ........++|||||+++
T Consensus 136 ~~~Fs~~l~~~~~~~~~g~l~~Gg~d~~~~~~~~~~~p~~~~~-~~~~~v~l~~i~v~~~~~~~~~~~~~~iiDsGt~~~ 214 (283)
T cd05471 136 SPVFSFYLGRDGDGGNGGELTFGGIDPSKYTGDLTYTPVVSNG-PGYWQVPLDGISVGGKSVISSSGGGGAIVDSGTSLI 214 (283)
T ss_pred CCEEEEEEcCCCCCCCCCEEEEcccCccccCCceEEEecCCCC-CCEEEEEeCeEEECCceeeecCCCcEEEEecCCCCE
Confidence 9999999996 37999999998753 7899999999851 2699999999999986 334456899999999999
Q ss_pred eeCHHHHHHHHHHHHHHhcCCCCCCCcCCCCcCcccc-cCccceeeeeee
Q 019849 286 YFNSQAYKTTLDLMRKDLKGKPLEDTAEEKALPVCWK-GTWKCLLGNFEW 334 (335)
Q Consensus 286 ~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~-~~~~~~~~~f~~ 334 (335)
+||+++|++|.+++.+..... .......|.. ...|.+.|+|.|
T Consensus 215 ~lp~~~~~~l~~~~~~~~~~~------~~~~~~~~~~~~~~p~i~f~f~~ 258 (283)
T cd05471 215 YLPSSVYDAILKALGAAVSSS------DGGYGVDCSPCDTLPDITFTFLW 258 (283)
T ss_pred eCCHHHHHHHHHHhCCccccc------CCcEEEeCcccCcCCCEEEEEEE
Confidence 999999999999998877631 0001112333 345889999844
No 21
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=9.7e-36 Score=271.86 Aligned_cols=177 Identities=40% Similarity=0.677 Sum_probs=154.6
Q ss_pred eEEEEEEeCCCCcEEEEEEeCCCCceeEecCCCCCCCCCCCCCCCCCCCCcccCCccccCCCCCCCCCCCCCCCCCeeEE
Q 019849 62 YYSVTLKIGNPPKLYELDIDTGSDLTWVQCNAPCTGCTLPPESLYHPKNNLVACNDPFCSAFHLPENIRCEANDQCDYEV 141 (335)
Q Consensus 62 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~c~~C~~~~~~~y~p~~S~v~c~~~~C~~~~~~~~~~c~~~~~~~~~~ 141 (335)
+|+++|+||||||++.|+|||||+++||+| |.|.+
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~---------------------------------------------~~~~~ 35 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC---------------------------------------------CSYEY 35 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC---------------------------------------------CceEe
Confidence 599999999999999999999999999964 35789
Q ss_pred EeCCCCeEEEEEEEEEEEeeccCCCc--CCCceEEEeeeecCCCCCCCCCcceEEeeCCCCCchhhhhhhcCCcceeeee
Q 019849 142 LYADHGSSLGVLVTDHFPLRLTNGSL--LGPRLIFGCGYNQRNPGPKPPPTAGVLGLGLGKASILSQLQSLGLTRNVLGH 219 (335)
Q Consensus 142 ~Y~~Gs~~~G~~~~D~v~~~~~~g~~--~~~~~~Fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~g~i~~~Fs~ 219 (335)
.|++|+.+.|.+++|+|+|+ +. .++++.|||+.+..+ + .....+||||||+...|++.||+.++ ++||+
T Consensus 36 ~Y~dg~~~~G~~~~D~v~~g----~~~~~~~~~~Fg~~~~~~~-~-~~~~~~GIlGLg~~~~s~~~ql~~~~---~~Fs~ 106 (265)
T cd05476 36 SYGDGSSTSGVLATETFTFG----DSSVSVPNVAFGCGTDNEG-G-SFGGADGILGLGRGPLSLVSQLGSTG---NKFSY 106 (265)
T ss_pred EeCCCceeeeeEEEEEEEec----CCCCccCCEEEEecccccC-C-ccCCCCEEEECCCCcccHHHHhhccc---CeeEE
Confidence 99998899999999999994 54 788999999998765 2 24678999999999999999999887 89999
Q ss_pred eecc----CCCceEEeCCCCC-CCCCcEEEeCccCCC-CCceEEeeeEEEeCcEEcc----------ccCccEEEecccc
Q 019849 220 CLSV----RGGGYLFLGHDLV-PSSGIAWTPMSRDLL-EKHYSSGPAELLFGGKSTG----------IKGLQIIFDSGSS 283 (335)
Q Consensus 220 ~L~~----~~~G~l~~G~~~~-~~g~l~~~p~~~~~~-~~~~~v~~~~i~v~g~~~~----------~~~~~~iiDSGTs 283 (335)
||.+ ...|+|+||++|. ..+++.|+|++.++. ..+|.|++++|+++++.+. .....++|||||+
T Consensus 107 ~l~~~~~~~~~G~l~fGg~d~~~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DTGTs 186 (265)
T cd05476 107 CLVPHDDTGGSSPLILGDAADLGGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGTT 186 (265)
T ss_pred EccCCCCCCCCCeEEECCcccccCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEeCCCc
Confidence 9984 4589999999875 478999999987631 3699999999999998764 2357899999999
Q ss_pred ceeeCHHHH
Q 019849 284 YTYFNSQAY 292 (335)
Q Consensus 284 ~~~lp~~~~ 292 (335)
++++|+++|
T Consensus 187 ~~~lp~~~~ 195 (265)
T cd05476 187 LTYLPDPAY 195 (265)
T ss_pred ceEcCcccc
Confidence 999999998
No 22
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=1.7e-35 Score=274.08 Aligned_cols=207 Identities=27% Similarity=0.378 Sum_probs=174.9
Q ss_pred eEEEEEEeCCCCcEEEEEEeCCCCceeEecCCCCCCCCCCCCCCCCCCCCcccCCccccCCCCCCCCCCCCCCCCCeeEE
Q 019849 62 YYSVTLKIGNPPKLYELDIDTGSDLTWVQCNAPCTGCTLPPESLYHPKNNLVACNDPFCSAFHLPENIRCEANDQCDYEV 141 (335)
Q Consensus 62 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~c~~C~~~~~~~y~p~~S~v~c~~~~C~~~~~~~~~~c~~~~~~~~~~ 141 (335)
.|+++|.||||+|++.|+|||||+++||+ .|++
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~-----------------------------------------------~~~~ 34 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP-----------------------------------------------DFSI 34 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee-----------------------------------------------eeEE
Confidence 69999999999999999999999999996 2468
Q ss_pred EeCCCCeEEEEEEEEEEEeeccCCCcCCCceEEEeeeecCCCCCCCCCcceEEeeCCCCC-----------chhhhhhhc
Q 019849 142 LYADHGSSLGVLVTDHFPLRLTNGSLLGPRLIFGCGYNQRNPGPKPPPTAGVLGLGLGKA-----------SILSQLQSL 210 (335)
Q Consensus 142 ~Y~~Gs~~~G~~~~D~v~~~~~~g~~~~~~~~Fg~~~~~~~~~~~~~~~~GIlGLg~~~~-----------s~~~ql~~~ 210 (335)
.|++|+.+.|.+++|+|+| ++..++++.|||++... ..+||||||+... +++.||+++
T Consensus 35 ~Y~~g~~~~G~~~~D~v~~----g~~~~~~~~fg~~~~~~-------~~~GilGLg~~~~~~~~~~~~~~~s~~~~L~~~ 103 (295)
T cd05474 35 SYGDGTSASGTWGTDTVSI----GGATVKNLQFAVANSTS-------SDVGVLGIGLPGNEATYGTGYTYPNFPIALKKQ 103 (295)
T ss_pred EeccCCcEEEEEEEEEEEE----CCeEecceEEEEEecCC-------CCcceeeECCCCCcccccCCCcCCCHHHHHHHC
Confidence 9999889999999999999 45678899999998742 3799999998775 799999999
Q ss_pred CCc-ceeeeeeecc--CCCceEEeCCCCC--CCCCcEEEeCccCCC---CCceEEeeeEEEeCcEEcc----ccCccEEE
Q 019849 211 GLT-RNVLGHCLSV--RGGGYLFLGHDLV--PSSGIAWTPMSRDLL---EKHYSSGPAELLFGGKSTG----IKGLQIIF 278 (335)
Q Consensus 211 g~i-~~~Fs~~L~~--~~~G~l~~G~~~~--~~g~l~~~p~~~~~~---~~~~~v~~~~i~v~g~~~~----~~~~~~ii 278 (335)
|+| +++||+||.+ ...|.|+||++|. ..+++.|+|+..... ..+|.|.+++|+++++.+. .....++|
T Consensus 104 g~i~~~~Fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~ii 183 (295)
T cd05474 104 GLIKKNAYSLYLNDLDASTGSILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTLLSKNLPALL 183 (295)
T ss_pred CcccceEEEEEeCCCCCCceeEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCcccccCCCccEEE
Confidence 999 8999999995 3689999999874 368999999987642 2689999999999988753 34579999
Q ss_pred eccccceeeCHHHHHHHHHHHHHHhcCCCCCCCcCCCCcCcccccCccceeeee
Q 019849 279 DSGSSYTYFNSQAYKTTLDLMRKDLKGKPLEDTAEEKALPVCWKGTWKCLLGNF 332 (335)
Q Consensus 279 DSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~f 332 (335)
||||++++||+++|++|.+++.+..... ...-...|++...|.|.|+|
T Consensus 184 DSGt~~~~lP~~~~~~l~~~~~~~~~~~------~~~~~~~C~~~~~p~i~f~f 231 (295)
T cd05474 184 DSGTTLTYLPSDIVDAIAKQLGATYDSD------EGLYVVDCDAKDDGSLTFNF 231 (295)
T ss_pred CCCCccEeCCHHHHHHHHHHhCCEEcCC------CcEEEEeCCCCCCCEEEEEE
Confidence 9999999999999999999998665421 11224578876558999988
No 23
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=8e-35 Score=271.62 Aligned_cols=216 Identities=28% Similarity=0.512 Sum_probs=177.0
Q ss_pred eEEEEEEeCCCCcEEEEEEeCCCCceeEecCCCCCCC-CCCCCCCCCCCCCcccCCccccCCCCCCCCCCCCCCCCCeeE
Q 019849 62 YYSVTLKIGNPPKLYELDIDTGSDLTWVQCNAPCTGC-TLPPESLYHPKNNLVACNDPFCSAFHLPENIRCEANDQCDYE 140 (335)
Q Consensus 62 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~c~~C-~~~~~~~y~p~~S~v~c~~~~C~~~~~~~~~~c~~~~~~~~~ 140 (335)
+|+++|.||||+|+++|++||||+++||++. .|..| .......|++.+|. +|.. .++.+.
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~-~c~~~~~~~~~~~y~~~~S~------t~~~------------~~~~~~ 61 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSS-NCNSCSSCASSGFYNPSKSS------TFSN------------QGKPFS 61 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBT-TECSHTHHCTSC-BBGGGST------TEEE------------EEEEEE
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeecee-cccccccccccccccccccc------cccc------------ceeeee
Confidence 5999999999999999999999999999998 88776 33356788887663 1111 356799
Q ss_pred EEeCCCCeEEEEEEEEEEEeeccCCCcCCCceEEEeeeecCCCCCCCCCcceEEeeCCC-------CCchhhhhhhcCCc
Q 019849 141 VLYADHGSSLGVLVTDHFPLRLTNGSLLGPRLIFGCGYNQRNPGPKPPPTAGVLGLGLG-------KASILSQLQSLGLT 213 (335)
Q Consensus 141 ~~Y~~Gs~~~G~~~~D~v~~~~~~g~~~~~~~~Fg~~~~~~~~~~~~~~~~GIlGLg~~-------~~s~~~ql~~~g~i 213 (335)
+.|++|+ ++|.+++|+|+| ++..+.++.||++....+........+||||||+. ..+++.+|.++|.|
T Consensus 62 ~~y~~g~-~~G~~~~D~v~i----g~~~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~~~g~i 136 (317)
T PF00026_consen 62 ISYGDGS-VSGNLVSDTVSI----GGLTIPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTYPTFLDQLVQQGLI 136 (317)
T ss_dssp EEETTEE-EEEEEEEEEEEE----TTEEEEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS-SHHHHHHHTTSS
T ss_pred eeccCcc-cccccccceEee----eeccccccceeccccccccccccccccccccccCCcccccccCCcceecchhhccc
Confidence 9999995 999999999999 67788899999998854321113468999999974 36789999999999
Q ss_pred -ceeeeeeeccC--CCceEEeCCCCCC--CCCcEEEeCccCCCCCceEEeeeEEEeCcE-EccccCccEEEeccccceee
Q 019849 214 -RNVLGHCLSVR--GGGYLFLGHDLVP--SSGIAWTPMSRDLLEKHYSSGPAELLFGGK-STGIKGLQIIFDSGSSYTYF 287 (335)
Q Consensus 214 -~~~Fs~~L~~~--~~G~l~~G~~~~~--~g~l~~~p~~~~~~~~~~~v~~~~i~v~g~-~~~~~~~~~iiDSGTs~~~l 287 (335)
+++||++|.+. ..|.|+||++|.. .+++.|+|+... .+|.+.+.+|.+++. .....+..++||||++++++
T Consensus 137 ~~~~fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~~~~~~---~~w~v~~~~i~i~~~~~~~~~~~~~~~Dtgt~~i~l 213 (317)
T PF00026_consen 137 SSNVFSLYLNPSDSQNGSLTFGGYDPSKYDGDLVWVPLVSS---GYWSVPLDSISIGGESVFSSSGQQAILDTGTSYIYL 213 (317)
T ss_dssp SSSEEEEEEESTTSSEEEEEESSEEGGGEESEEEEEEBSST---TTTEEEEEEEEETTEEEEEEEEEEEEEETTBSSEEE
T ss_pred cccccceeeeecccccchheeeccccccccCceeccCcccc---cccccccccccccccccccccceeeecccccccccc
Confidence 89999999964 4899999998753 689999999944 599999999999998 33334478999999999999
Q ss_pred CHHHHHHHHHHHHHHhc
Q 019849 288 NSQAYKTTLDLMRKDLK 304 (335)
Q Consensus 288 p~~~~~~l~~~i~~~~~ 304 (335)
|++++++|+++|.....
T Consensus 214 p~~~~~~i~~~l~~~~~ 230 (317)
T PF00026_consen 214 PRSIFDAIIKALGGSYS 230 (317)
T ss_dssp EHHHHHHHHHHHTTEEE
T ss_pred cchhhHHHHhhhccccc
Confidence 99999999999987665
No 24
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.96 E-value=1.2e-29 Score=215.15 Aligned_cols=156 Identities=37% Similarity=0.674 Sum_probs=124.1
Q ss_pred EEEEEEeCCCCcEEEEEEeCCCCceeEecCCCCCCCCCCCCCCCCCCCC----cccCCccccCCCCCCCCCCCCCCCCCe
Q 019849 63 YSVTLKIGNPPKLYELDIDTGSDLTWVQCNAPCTGCTLPPESLYHPKNN----LVACNDPFCSAFHLPENIRCEANDQCD 138 (335)
Q Consensus 63 Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~c~~C~~~~~~~y~p~~S----~v~c~~~~C~~~~~~~~~~c~~~~~~~ 138 (335)
|+++|.||||+|++.|+|||||+++|++|. .+.|+|.+| .++|.++.|...+......+..+..|.
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C~----------~~~f~~~~Sst~~~v~C~s~~C~~~~~~~~~~~~~~~~C~ 70 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQCP----------DPPFDPSKSSTYRPVPCSSPQCSSAPSFCPCCCCSNNSCP 70 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET--------------STT-TTSSBEC-BTTSHHHHHCTSSBTCCTCESSEEE
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcCC----------CcccCCccCCcccccCCCCcchhhcccccccCCCCcCccc
Confidence 899999999999999999999999999873 678999998 499999999876653222344457899
Q ss_pred eEEEeCCCCeEEEEEEEEEEEeeccCCC-cCCCceEEEeeeecCCCCCCCCCcceEEeeCCCCCchhhhhhhcCCcceee
Q 019849 139 YEVLYADHGSSLGVLVTDHFPLRLTNGS-LLGPRLIFGCGYNQRNPGPKPPPTAGVLGLGLGKASILSQLQSLGLTRNVL 217 (335)
Q Consensus 139 ~~~~Y~~Gs~~~G~~~~D~v~~~~~~g~-~~~~~~~Fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~g~i~~~F 217 (335)
|.+.|++|+.+.|.+++|+|+++..+++ ..+.++.|||++...+.+. ..+||||||+.+.||+.||..+ ..++|
T Consensus 71 y~~~y~~~s~~~G~l~~D~~~~~~~~~~~~~~~~~~FGC~~~~~g~~~---~~~GilGLg~~~~Sl~sQl~~~--~~~~F 145 (164)
T PF14543_consen 71 YSQSYGDGSSSSGFLASDTLTFGSSSGGSNSVPDFIFGCATSNSGLFY---GADGILGLGRGPLSLPSQLASS--SGNKF 145 (164)
T ss_dssp EEEEETTTEEEEEEEEEEEEEEEEESSSSEEEEEEEEEEE-GGGTSST---TEEEEEE-SSSTTSHHHHHHHH----SEE
T ss_pred ceeecCCCccccCceEEEEEEecCCCCCCceeeeEEEEeeeccccCCc---CCCcccccCCCcccHHHHHHHh--cCCeE
Confidence 9999999999999999999999865322 4567999999998876543 7999999999999999999888 68899
Q ss_pred eeeecc---CCCceEEeCC
Q 019849 218 GHCLSV---RGGGYLFLGH 233 (335)
Q Consensus 218 s~~L~~---~~~G~l~~G~ 233 (335)
|+||.+ ...|+|+||+
T Consensus 146 SyCL~~~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 146 SYCLPSSSPSSSGFLSFGD 164 (164)
T ss_dssp EEEB-S-SSSSEEEEEECS
T ss_pred EEECCCCCCCCCEEEEeCc
Confidence 999986 6789999995
No 25
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.90 E-value=3.1e-23 Score=163.77 Aligned_cols=108 Identities=28% Similarity=0.551 Sum_probs=89.8
Q ss_pred EEEEeCCCCcEEEEEEeCCCCceeEecCCCCCCCCCCCCCCC-CCCCCcccCCccccCCCCCCCCCCCCCCCCCeeEEEe
Q 019849 65 VTLKIGNPPKLYELDIDTGSDLTWVQCNAPCTGCTLPPESLY-HPKNNLVACNDPFCSAFHLPENIRCEANDQCDYEVLY 143 (335)
Q Consensus 65 ~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~c~~C~~~~~~~y-~p~~S~v~c~~~~C~~~~~~~~~~c~~~~~~~~~~~Y 143 (335)
++|.||||||++.|+|||||+++||+|. +|..|....++.| +|++|+ +.....|.|.+.|
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~-~c~~~~~~~~~~~~~~~~ss------------------t~~~~~~~~~~~Y 61 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSV-DCQSLAIYSHSSYDDPSASS------------------TYSDNGCTFSITY 61 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCC-CCCCcccccccccCCcCCCC------------------CCCCCCcEEEEEe
Confidence 4799999999999999999999999999 8988876666666 887763 1112568999999
Q ss_pred CCCCeEEEEEEEEEEEeeccCCCcCCCceEEEeeeecCCCCCCCCCcceEEee
Q 019849 144 ADHGSSLGVLVTDHFPLRLTNGSLLGPRLIFGCGYNQRNPGPKPPPTAGVLGL 196 (335)
Q Consensus 144 ~~Gs~~~G~~~~D~v~~~~~~g~~~~~~~~Fg~~~~~~~~~~~~~~~~GIlGL 196 (335)
++| .+.|.+++|+|+| ++..++++.|||++...+.+......+|||||
T Consensus 62 ~~g-~~~g~~~~D~v~i----g~~~~~~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 62 GTG-SLSGGLSTDTVSI----GDIEVVGQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred CCC-eEEEEEEEEEEEE----CCEEECCEEEEEEEecCCccccccccccccCC
Confidence 999 6889999999999 56678899999999887754334578999997
No 26
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.30 E-value=7.7e-12 Score=105.65 Aligned_cols=80 Identities=20% Similarity=0.366 Sum_probs=60.3
Q ss_pred ceEEeeeEEEeCcEEcccc---------CccEEEeccccceeeCHHHHHHHHHHHHHHhcCCCCCC-CcCCCCcCccccc
Q 019849 254 HYSSGPAELLFGGKSTGIK---------GLQIIFDSGSSYTYFNSQAYKTTLDLMRKDLKGKPLED-TAEEKALPVCWKG 323 (335)
Q Consensus 254 ~~~v~~~~i~v~g~~~~~~---------~~~~iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~-~~~~~~~~~C~~~ 323 (335)
+|.|++.+|+||++++.++ ...++|||||++++||+++|++|.++|.+++...+++| .....++++||+.
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~~~~~~~~Cy~~ 80 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQLSDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAPPFSGFDLCYNL 80 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCETTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE---TT-S-EEEG
T ss_pred CccEEEEEEEECCEEecCChHHhhccCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhcccccccccCCCCCceeec
Confidence 5899999999999988654 36799999999999999999999999999999776666 3356788999998
Q ss_pred Cc----------cceeeeee
Q 019849 324 TW----------KCLLGNFE 333 (335)
Q Consensus 324 ~~----------~~~~~~f~ 333 (335)
+. |.+.+||+
T Consensus 81 ~~~~~~~~~~~~P~i~l~F~ 100 (161)
T PF14541_consen 81 SSFGVNRDWAKFPTITLHFE 100 (161)
T ss_dssp GCS-EETTEESS--EEEEET
T ss_pred cccccccccccCCeEEEEEe
Confidence 65 77999994
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=98.17 E-value=8.9e-06 Score=61.72 Aligned_cols=94 Identities=17% Similarity=0.158 Sum_probs=65.9
Q ss_pred eeEEEEEEeCCCCcEEEEEEeCCCCceeEecCCCCCCCCCCCCCCCCCCCCcccCCccccCCCCCCCCCCCCCCCCCeeE
Q 019849 61 GYYSVTLKIGNPPKLYELDIDTGSDLTWVQCNAPCTGCTLPPESLYHPKNNLVACNDPFCSAFHLPENIRCEANDQCDYE 140 (335)
Q Consensus 61 ~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~c~~C~~~~~~~y~p~~S~v~c~~~~C~~~~~~~~~~c~~~~~~~~~ 140 (335)
+.|++++.|+ .+++.++||||++.+|+... ....+.. + ........
T Consensus 1 ~~~~v~v~i~--~~~~~~llDTGa~~s~i~~~-~~~~l~~-------~------------------------~~~~~~~~ 46 (96)
T cd05483 1 GHFVVPVTIN--GQPVRFLLDTGASTTVISEE-LAERLGL-------P------------------------LTLGGKVT 46 (96)
T ss_pred CcEEEEEEEC--CEEEEEEEECCCCcEEcCHH-HHHHcCC-------C------------------------ccCCCcEE
Confidence 3689999999 59999999999999999765 1111110 0 01223556
Q ss_pred EEeCCCCeEEEEEEEEEEEeeccCCCcCCCceEEEeeeecCCCCCCCCCcceEEeeCC
Q 019849 141 VLYADHGSSLGVLVTDHFPLRLTNGSLLGPRLIFGCGYNQRNPGPKPPPTAGVLGLGL 198 (335)
Q Consensus 141 ~~Y~~Gs~~~G~~~~D~v~~~~~~g~~~~~~~~Fg~~~~~~~~~~~~~~~~GIlGLg~ 198 (335)
+..++|.........+.+++ |+..+.++.+........ ..+||||+.+
T Consensus 47 ~~~~~G~~~~~~~~~~~i~i----g~~~~~~~~~~v~d~~~~------~~~gIlG~d~ 94 (96)
T cd05483 47 VQTANGRVRAARVRLDSLQI----GGITLRNVPAVVLPGDAL------GVDGLLGMDF 94 (96)
T ss_pred EEecCCCccceEEEcceEEE----CCcEEeccEEEEeCCccc------CCceEeChHH
Confidence 77788866666777889999 566777888877755332 4899999864
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=96.95 E-value=0.0075 Score=48.26 Aligned_cols=96 Identities=11% Similarity=0.087 Sum_probs=62.2
Q ss_pred CCeeEEEEEEeCCCCcEEEEEEeCCCCceeEecCCCCCCCCCCCCCCCCCCCCcccCCccccCCCCCCCCCCCCCCCCCe
Q 019849 59 PLGYYSVTLKIGNPPKLYELDIDTGSDLTWVQCNAPCTGCTLPPESLYHPKNNLVACNDPFCSAFHLPENIRCEANDQCD 138 (335)
Q Consensus 59 ~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~c~~C~~~~~~~y~p~~S~v~c~~~~C~~~~~~~~~~c~~~~~~~ 138 (335)
.+|+|++++.|.- +++.++||||++.+-+... --.... .++. .....
T Consensus 8 ~~g~~~v~~~InG--~~~~flVDTGAs~t~is~~-~A~~Lg------l~~~------------------------~~~~~ 54 (121)
T TIGR02281 8 GDGHFYATGRVNG--RNVRFLVDTGATSVALNEE-DAQRLG------LDLN------------------------RLGYT 54 (121)
T ss_pred CCCeEEEEEEECC--EEEEEEEECCCCcEEcCHH-HHHHcC------CCcc------------------------cCCce
Confidence 6789999999974 7999999999999888654 000000 0010 01113
Q ss_pred eEEEeCCCCeEEEEEEEEEEEeeccCCCcCCCceEEEeeeecCCCCCCCCCcceEEeeCC
Q 019849 139 YEVLYADHGSSLGVLVTDHFPLRLTNGSLLGPRLIFGCGYNQRNPGPKPPPTAGVLGLGL 198 (335)
Q Consensus 139 ~~~~Y~~Gs~~~G~~~~D~v~~~~~~g~~~~~~~~Fg~~~~~~~~~~~~~~~~GIlGLg~ 198 (335)
..+.=+.|......+.-|.+.+ |+....|+.+.+..... ..+|+||+.+
T Consensus 55 ~~~~ta~G~~~~~~~~l~~l~i----G~~~~~nv~~~v~~~~~-------~~~~LLGm~f 103 (121)
T TIGR02281 55 VTVSTANGQIKAARVTLDRVAI----GGIVVNDVDAMVAEGGA-------LSESLLGMSF 103 (121)
T ss_pred EEEEeCCCcEEEEEEEeCEEEE----CCEEEeCcEEEEeCCCc-------CCceEcCHHH
Confidence 3444455644445567889999 67788888877764321 1479999864
No 29
>PF13650 Asp_protease_2: Aspartyl protease
Probab=96.15 E-value=0.044 Score=40.57 Aligned_cols=89 Identities=19% Similarity=0.223 Sum_probs=52.8
Q ss_pred EEEEeCCCCcEEEEEEeCCCCceeEecCCCCCCCCCCCCCCCCCCCCcccCCccccCCCCCCCCCCCCCCCCCeeEEEeC
Q 019849 65 VTLKIGNPPKLYELDIDTGSDLTWVQCNAPCTGCTLPPESLYHPKNNLVACNDPFCSAFHLPENIRCEANDQCDYEVLYA 144 (335)
Q Consensus 65 ~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~c~~C~~~~~~~y~p~~S~v~c~~~~C~~~~~~~~~~c~~~~~~~~~~~Y~ 144 (335)
+++.|+- +++++++|||++.+.+... ...... ..+. .......+.-.
T Consensus 1 V~v~vng--~~~~~liDTGa~~~~i~~~-~~~~l~------~~~~------------------------~~~~~~~~~~~ 47 (90)
T PF13650_consen 1 VPVKVNG--KPVRFLIDTGASISVISRS-LAKKLG------LKPR------------------------PKSVPISVSGA 47 (90)
T ss_pred CEEEECC--EEEEEEEcCCCCcEEECHH-HHHHcC------CCCc------------------------CCceeEEEEeC
Confidence 3567764 8999999999998877654 111100 0000 01112344445
Q ss_pred CCCeEEEEEEEEEEEeeccCCCcCCCceEEEeeeecCCCCCCCCCcceEEeeC
Q 019849 145 DHGSSLGVLVTDHFPLRLTNGSLLGPRLIFGCGYNQRNPGPKPPPTAGVLGLG 197 (335)
Q Consensus 145 ~Gs~~~G~~~~D~v~~~~~~g~~~~~~~~Fg~~~~~~~~~~~~~~~~GIlGLg 197 (335)
+|........-+.+++ |+....++.|-.... ....+||||+-
T Consensus 48 ~g~~~~~~~~~~~i~i----g~~~~~~~~~~v~~~-------~~~~~~iLG~d 89 (90)
T PF13650_consen 48 GGSVTVYRGRVDSITI----GGITLKNVPFLVVDL-------GDPIDGILGMD 89 (90)
T ss_pred CCCEEEEEEEEEEEEE----CCEEEEeEEEEEECC-------CCCCEEEeCCc
Confidence 5654455566678888 566666777766651 23579999974
No 30
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=94.55 E-value=0.37 Score=38.52 Aligned_cols=32 Identities=13% Similarity=0.204 Sum_probs=27.0
Q ss_pred CCeeEEEEEEeCCCCcEEEEEEeCCCCceeEecC
Q 019849 59 PLGYYSVTLKIGNPPKLYELDIDTGSDLTWVQCN 92 (335)
Q Consensus 59 ~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~ 92 (335)
....+++++.|+. +++.+++|||++..++...
T Consensus 13 ~~~~~~v~~~Ing--~~~~~LvDTGAs~s~Is~~ 44 (124)
T cd05479 13 KVPMLYINVEING--VPVKAFVDSGAQMTIMSKA 44 (124)
T ss_pred eeeEEEEEEEECC--EEEEEEEeCCCceEEeCHH
Confidence 3457889999984 8899999999999998765
No 31
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=90.45 E-value=0.33 Score=36.35 Aligned_cols=28 Identities=32% Similarity=0.458 Sum_probs=24.5
Q ss_pred EEEEEEeCCCCcEEEEEEeCCCCceeEecC
Q 019849 63 YSVTLKIGNPPKLYELDIDTGSDLTWVQCN 92 (335)
Q Consensus 63 Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~ 92 (335)
|++++.|+- +++.+++||||+..++..+
T Consensus 1 ~~~~~~Ing--~~i~~lvDTGA~~svis~~ 28 (91)
T cd05484 1 KTVTLLVNG--KPLKFQLDTGSAITVISEK 28 (91)
T ss_pred CEEEEEECC--EEEEEEEcCCcceEEeCHH
Confidence 468889985 8999999999999999765
No 32
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=90.20 E-value=0.64 Score=37.06 Aligned_cols=35 Identities=14% Similarity=0.343 Sum_probs=28.3
Q ss_pred CceEEeeeEEEeCcEEccccCccEEEeccccceeeCHHHHHHH
Q 019849 253 KHYSSGPAELLFGGKSTGIKGLQIIFDSGSSYTYFNSQAYKTT 295 (335)
Q Consensus 253 ~~~~v~~~~i~v~g~~~~~~~~~~iiDSGTs~~~lp~~~~~~l 295 (335)
++|.+. +.+||+. ..++||||++.+.+++++.+++
T Consensus 10 g~~~v~---~~InG~~-----~~flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 10 GHFYAT---GRVNGRN-----VRFLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CeEEEE---EEECCEE-----EEEEEECCCCcEEcCHHHHHHc
Confidence 566554 5678874 3699999999999999998876
No 33
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=88.47 E-value=0.87 Score=32.61 Aligned_cols=32 Identities=22% Similarity=0.323 Sum_probs=28.3
Q ss_pred CCeeEEEEEEeCCCCcEEEEEEeCCCCceeEecC
Q 019849 59 PLGYYSVTLKIGNPPKLYELDIDTGSDLTWVQCN 92 (335)
Q Consensus 59 ~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~ 92 (335)
..+.+++++.||. +.+.+++|||++...|+..
T Consensus 5 ~~g~~~v~~~I~g--~~~~alvDtGat~~fis~~ 36 (72)
T PF13975_consen 5 DPGLMYVPVSIGG--VQVKALVDTGATHNFISES 36 (72)
T ss_pred cCCEEEEEEEECC--EEEEEEEeCCCcceecCHH
Confidence 4578999999996 9999999999999988765
No 34
>PF13650 Asp_protease_2: Aspartyl protease
Probab=88.20 E-value=0.71 Score=33.86 Aligned_cols=29 Identities=21% Similarity=0.381 Sum_probs=24.4
Q ss_pred EEeCcEEccccCccEEEeccccceeeCHHHHHHH
Q 019849 262 LLFGGKSTGIKGLQIIFDSGSSYTYFNSQAYKTT 295 (335)
Q Consensus 262 i~v~g~~~~~~~~~~iiDSGTs~~~lp~~~~~~l 295 (335)
+.+||+.+ .++||||++.+.+.++.++++
T Consensus 3 v~vng~~~-----~~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 3 VKVNGKPV-----RFLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEECCEEE-----EEEEcCCCCcEEECHHHHHHc
Confidence 56787743 599999999999999998876
No 35
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=86.38 E-value=1.1 Score=33.45 Aligned_cols=31 Identities=26% Similarity=0.454 Sum_probs=26.2
Q ss_pred EEEeCcEEccccCccEEEeccccceeeCHHHHHHHH
Q 019849 261 ELLFGGKSTGIKGLQIIFDSGSSYTYFNSQAYKTTL 296 (335)
Q Consensus 261 ~i~v~g~~~~~~~~~~iiDSGTs~~~lp~~~~~~l~ 296 (335)
.+.|||+.+ .++||||++.+.++++.+..+-
T Consensus 4 ~~~Ing~~i-----~~lvDTGA~~svis~~~~~~lg 34 (91)
T cd05484 4 TLLVNGKPL-----KFQLDTGSAITVISEKTWRKLG 34 (91)
T ss_pred EEEECCEEE-----EEEEcCCcceEEeCHHHHHHhC
Confidence 467888875 4899999999999999998764
No 36
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=85.22 E-value=1.5 Score=31.42 Aligned_cols=29 Identities=17% Similarity=0.408 Sum_probs=24.7
Q ss_pred EEeCcEEccccCccEEEeccccceeeCHHHHHHH
Q 019849 262 LLFGGKSTGIKGLQIIFDSGSSYTYFNSQAYKTT 295 (335)
Q Consensus 262 i~v~g~~~~~~~~~~iiDSGTs~~~lp~~~~~~l 295 (335)
+.++|+.+ .+++|||++..+++.+..+.+
T Consensus 13 ~~I~g~~~-----~alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 13 VSIGGVQV-----KALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEECCEEE-----EEEEeCCCcceecCHHHHHHh
Confidence 56777664 499999999999999999877
No 37
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=81.71 E-value=2.3 Score=32.11 Aligned_cols=27 Identities=30% Similarity=0.432 Sum_probs=22.6
Q ss_pred EEEEEeCCCCcEEEEEEeCCCCceeEecC
Q 019849 64 SVTLKIGNPPKLYELDIDTGSDLTWVQCN 92 (335)
Q Consensus 64 ~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~ 92 (335)
+.+|.|.. +++.+++||||+.+-++..
T Consensus 7 ~i~v~i~g--~~i~~LlDTGA~vsiI~~~ 33 (100)
T PF00077_consen 7 YITVKING--KKIKALLDTGADVSIISEK 33 (100)
T ss_dssp EEEEEETT--EEEEEEEETTBSSEEESSG
T ss_pred eEEEeECC--EEEEEEEecCCCcceeccc
Confidence 36777775 7999999999999888765
No 38
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=81.32 E-value=2.6 Score=31.08 Aligned_cols=30 Identities=17% Similarity=0.367 Sum_probs=23.9
Q ss_pred EEEeCcEEccccCccEEEeccccceeeCHHHHHHH
Q 019849 261 ELLFGGKSTGIKGLQIIFDSGSSYTYFNSQAYKTT 295 (335)
Q Consensus 261 ~i~v~g~~~~~~~~~~iiDSGTs~~~lp~~~~~~l 295 (335)
.+.+|++.+ .++||||++.+.++.+..+.+
T Consensus 6 ~v~i~~~~~-----~~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 6 PVTINGQPV-----RFLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEEECCEEE-----EEEEECCCCcEEcCHHHHHHc
Confidence 356776653 599999999999999887765
No 39
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=79.02 E-value=2.8 Score=31.01 Aligned_cols=29 Identities=14% Similarity=0.251 Sum_probs=24.3
Q ss_pred EEeCcEEccccCccEEEeccccceeeCHHHHHHH
Q 019849 262 LLFGGKSTGIKGLQIIFDSGSSYTYFNSQAYKTT 295 (335)
Q Consensus 262 i~v~g~~~~~~~~~~iiDSGTs~~~lp~~~~~~l 295 (335)
+.+||+.+ .+++|||.+.+.++++..+.+
T Consensus 3 v~InG~~~-----~fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 3 ITVEGVPI-----VFLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEECCEEE-----EEEEECCCCeEEECHHHhhhc
Confidence 56777764 489999999999999998875
No 40
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=74.91 E-value=4.4 Score=32.27 Aligned_cols=29 Identities=17% Similarity=0.294 Sum_probs=23.8
Q ss_pred EEeCcEEccccCccEEEeccccceeeCHHHHHHH
Q 019849 262 LLFGGKSTGIKGLQIIFDSGSSYTYFNSQAYKTT 295 (335)
Q Consensus 262 i~v~g~~~~~~~~~~iiDSGTs~~~lp~~~~~~l 295 (335)
+.+||+.+ .++||||++.+.++++..+++
T Consensus 21 ~~Ing~~~-----~~LvDTGAs~s~Is~~~a~~l 49 (124)
T cd05479 21 VEINGVPV-----KAFVDSGAQMTIMSKACAEKC 49 (124)
T ss_pred EEECCEEE-----EEEEeCCCceEEeCHHHHHHc
Confidence 45676653 589999999999999998875
No 41
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=74.05 E-value=4.4 Score=33.94 Aligned_cols=49 Identities=14% Similarity=0.191 Sum_probs=31.1
Q ss_pred cCCCceeeeeee-CCCCCeeEEEEEEeCCCCcEEEEEEeCCCCceeEecC
Q 019849 44 RFGSTAVFPITG-NVYPLGYYSVTLKIGNPPKLYELDIDTGSDLTWVQCN 92 (335)
Q Consensus 44 ~~~s~~~~pl~~-~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~ 92 (335)
+..+.-..|+-. .......=+..+.++.-..+++++|||||+...+...
T Consensus 13 ~~~~~~~~PIV~~~~~Pevg~T~~v~l~~~~t~i~vLfDSGSPTSfIr~d 62 (177)
T PF12384_consen 13 QKSSITTCPIVHYIAIPEVGKTAIVQLNCKGTPIKVLFDSGSPTSFIRSD 62 (177)
T ss_pred ccceeeeeeeEEEeeccccCcEEEEEEeecCcEEEEEEeCCCccceeehh
Confidence 334444666642 1112223345566666679999999999999888765
No 42
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=73.50 E-value=3.5 Score=31.13 Aligned_cols=28 Identities=18% Similarity=0.483 Sum_probs=22.1
Q ss_pred EEEeCcEEccccCccEEEeccccceeeCHHHHH
Q 019849 261 ELLFGGKSTGIKGLQIIFDSGSSYTYFNSQAYK 293 (335)
Q Consensus 261 ~i~v~g~~~~~~~~~~iiDSGTs~~~lp~~~~~ 293 (335)
.|.++|+.+ .++||||++.+.++++.+.
T Consensus 9 ~v~i~g~~i-----~~LlDTGA~vsiI~~~~~~ 36 (100)
T PF00077_consen 9 TVKINGKKI-----KALLDTGADVSIISEKDWK 36 (100)
T ss_dssp EEEETTEEE-----EEEEETTBSSEEESSGGSS
T ss_pred EEeECCEEE-----EEEEecCCCcceecccccc
Confidence 466777754 5999999999999987554
No 43
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=67.57 E-value=18 Score=31.56 Aligned_cols=86 Identities=10% Similarity=0.063 Sum_probs=56.2
Q ss_pred eeeeeeCCCCCeeEEEEEEeCCCCcEEEEEEeCCCCceeEecCCCCCCCCCCCCCCCCCCCCcccCCccccCCCCCCCCC
Q 019849 50 VFPITGNVYPLGYYSVTLKIGNPPKLYELDIDTGSDLTWVQCNAPCTGCTLPPESLYHPKNNLVACNDPFCSAFHLPENI 129 (335)
Q Consensus 50 ~~pl~~~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~c~~C~~~~~~~y~p~~S~v~c~~~~C~~~~~~~~~ 129 (335)
.+.|+. ..+|+|.++..|-- |++..++|||-+..-+..+ .- ..-.+++.+
T Consensus 95 ~v~Lak--~~~GHF~a~~~VNG--k~v~fLVDTGATsVal~~~-dA------~RlGid~~~------------------- 144 (215)
T COG3577 95 EVSLAK--SRDGHFEANGRVNG--KKVDFLVDTGATSVALNEE-DA------RRLGIDLNS------------------- 144 (215)
T ss_pred EEEEEe--cCCCcEEEEEEECC--EEEEEEEecCcceeecCHH-HH------HHhCCCccc-------------------
Confidence 444542 36799999999974 9999999999998888655 11 011222211
Q ss_pred CCCCCCCCeeEEEeCCCCeEEEEEEEEEEEeeccCCCcCCCceEE
Q 019849 130 RCEANDQCDYEVLYADHGSSLGVLVTDHFPLRLTNGSLLGPRLIF 174 (335)
Q Consensus 130 ~c~~~~~~~~~~~Y~~Gs~~~G~~~~D~v~~~~~~g~~~~~~~~F 174 (335)
.+.++.+.-+.|....-.+-.|.|.| |+..+.++.=
T Consensus 145 -----l~y~~~v~TANG~~~AA~V~Ld~v~I----G~I~~~nV~A 180 (215)
T COG3577 145 -----LDYTITVSTANGRARAAPVTLDRVQI----GGIRVKNVDA 180 (215)
T ss_pred -----cCCceEEEccCCccccceEEeeeEEE----ccEEEcCchh
Confidence 23455666677855556688899999 5555555443
No 44
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=65.87 E-value=6.9 Score=29.49 Aligned_cols=31 Identities=16% Similarity=0.340 Sum_probs=24.3
Q ss_pred EEeCcEEccccCccEEEeccccceeeCHHHHHHHH
Q 019849 262 LLFGGKSTGIKGLQIIFDSGSSYTYFNSQAYKTTL 296 (335)
Q Consensus 262 i~v~g~~~~~~~~~~iiDSGTs~~~lp~~~~~~l~ 296 (335)
+.++|+ ..-.+.+|||++...+|...|+.+.
T Consensus 3 ~~i~g~----~~v~~~vDtGA~vnllp~~~~~~l~ 33 (93)
T cd05481 3 MKINGK----QSVKFQLDTGATCNVLPLRWLKSLT 33 (93)
T ss_pred eEeCCc----eeEEEEEecCCEEEeccHHHHhhhc
Confidence 456663 1246899999999999999998775
No 45
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=64.60 E-value=14 Score=32.25 Aligned_cols=35 Identities=17% Similarity=0.356 Sum_probs=29.1
Q ss_pred CceEEeeeEEEeCcEEccccCccEEEeccccceeeCHHHHHHH
Q 019849 253 KHYSSGPAELLFGGKSTGIKGLQIIFDSGSSYTYFNSQAYKTT 295 (335)
Q Consensus 253 ~~~~v~~~~i~v~g~~~~~~~~~~iiDSGTs~~~lp~~~~~~l 295 (335)
+||.++ ..|||+.+. .+||||.|...++++.-+.+
T Consensus 104 GHF~a~---~~VNGk~v~-----fLVDTGATsVal~~~dA~Rl 138 (215)
T COG3577 104 GHFEAN---GRVNGKKVD-----FLVDTGATSVALNEEDARRL 138 (215)
T ss_pred CcEEEE---EEECCEEEE-----EEEecCcceeecCHHHHHHh
Confidence 788765 668998864 79999999999999887755
No 46
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=64.25 E-value=9.8 Score=28.42 Aligned_cols=25 Identities=44% Similarity=0.565 Sum_probs=21.0
Q ss_pred EEEeCCCCcEEEEEEeCCCCceeEecC
Q 019849 66 TLKIGNPPKLYELDIDTGSDLTWVQCN 92 (335)
Q Consensus 66 ~i~iGtP~q~~~v~~DTGSs~~Wv~~~ 92 (335)
++.|+ .|.+.+++|||+.++-+...
T Consensus 2 ~~~i~--g~~~~~llDTGAd~Tvi~~~ 26 (87)
T cd05482 2 TLYIN--GKLFEGLLDTGADVSIIAEN 26 (87)
T ss_pred EEEEC--CEEEEEEEccCCCCeEEccc
Confidence 45666 59999999999999999765
No 47
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=64.24 E-value=58 Score=31.03 Aligned_cols=54 Identities=13% Similarity=0.088 Sum_probs=31.8
Q ss_pred EEeCCCCeEEEEEEEEEEEeeccCCCcCCCceEEEeeeec-------------C-CCCCCCCCcceEEeeCCC
Q 019849 141 VLYADHGSSLGVLVTDHFPLRLTNGSLLGPRLIFGCGYNQ-------------R-NPGPKPPPTAGVLGLGLG 199 (335)
Q Consensus 141 ~~Y~~Gs~~~G~~~~D~v~~~~~~g~~~~~~~~Fg~~~~~-------------~-~~~~~~~~~~GIlGLg~~ 199 (335)
..|++| +.=|.+.+-+|+|+++ .-.++++.++.+. . ..-....++.||||+|.-
T Consensus 82 ~~F~sg-ytWGsVr~AdV~igge----~A~~iPiQvI~D~~~~~~P~sC~~~g~~~~t~~~lgaNGILGIg~~ 149 (370)
T PF11925_consen 82 AQFASG-YTWGSVRTADVTIGGE----TASSIPIQVIGDSAAPSVPSSCSNSGASMNTVADLGANGILGIGPF 149 (370)
T ss_pred hhccCc-ccccceEEEEEEEcCe----eccccCEEEEcCCCCCCCCchhhcCCCCCCCcccccCceEEeecCC
Confidence 456777 6778899999999643 3333333333221 0 011123568999999854
No 48
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=62.91 E-value=9.9 Score=27.99 Aligned_cols=25 Identities=16% Similarity=0.243 Sum_probs=20.1
Q ss_pred EEEeCCCCcEEEEEEeCCCCceeEecC
Q 019849 66 TLKIGNPPKLYELDIDTGSDLTWVQCN 92 (335)
Q Consensus 66 ~i~iGtP~q~~~v~~DTGSs~~Wv~~~ 92 (335)
.+.|. .+++++++|||++.+-+...
T Consensus 2 ~v~In--G~~~~fLvDTGA~~tii~~~ 26 (86)
T cd06095 2 TITVE--GVPIVFLVDTGATHSVLKSD 26 (86)
T ss_pred EEEEC--CEEEEEEEECCCCeEEECHH
Confidence 34554 48999999999999999765
No 49
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=62.30 E-value=6.3 Score=30.56 Aligned_cols=22 Identities=14% Similarity=0.147 Sum_probs=19.1
Q ss_pred ccEEEecccccee-eCHHHHHHH
Q 019849 274 LQIIFDSGSSYTY-FNSQAYKTT 295 (335)
Q Consensus 274 ~~~iiDSGTs~~~-lp~~~~~~l 295 (335)
-.++||||.+... +|.++++++
T Consensus 17 v~~LVDTGat~~~~l~~~~a~~l 39 (107)
T TIGR03698 17 VRALVDTGFSGFLLVPPDIVNKL 39 (107)
T ss_pred EEEEEECCCCeEEecCHHHHHHc
Confidence 5699999999886 999999875
No 50
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=58.88 E-value=12 Score=29.87 Aligned_cols=30 Identities=13% Similarity=0.239 Sum_probs=23.6
Q ss_pred EEEeCcEEccccCccEEEeccccceeeCHHHHHHH
Q 019849 261 ELLFGGKSTGIKGLQIIFDSGSSYTYFNSQAYKTT 295 (335)
Q Consensus 261 ~i~v~g~~~~~~~~~~iiDSGTs~~~lp~~~~~~l 295 (335)
.+.+||+.+ .|+||||+..+.++.+..+++
T Consensus 28 ~~~ing~~v-----kA~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 28 NCKINGVPV-----KAFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEEETTEEE-----EEEEETT-SS-EEEHHHHHHT
T ss_pred EEEECCEEE-----EEEEeCCCCccccCHHHHHHc
Confidence 466788875 499999999999999999984
No 51
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=56.99 E-value=8.3 Score=30.71 Aligned_cols=20 Identities=20% Similarity=0.336 Sum_probs=18.2
Q ss_pred EEEecccc-ceeeCHHHHHHH
Q 019849 276 IIFDSGSS-YTYFNSQAYKTT 295 (335)
Q Consensus 276 ~iiDSGTs-~~~lp~~~~~~l 295 (335)
.+||||-+ ++.+|+++++++
T Consensus 29 ~LiDTGFtg~lvlp~~vaek~ 49 (125)
T COG5550 29 ELIDTGFTGYLVLPPQVAEKL 49 (125)
T ss_pred eEEecCCceeEEeCHHHHHhc
Confidence 48999999 999999999976
No 52
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=50.65 E-value=10 Score=28.90 Aligned_cols=17 Identities=35% Similarity=0.278 Sum_probs=8.2
Q ss_pred ccchhHHHHHHHHHHHhc
Q 019849 3 EKGKRVMGLLVLLMFATF 20 (335)
Q Consensus 3 ~~~~~~~~l~~l~l~~~~ 20 (335)
|.+++ ++||.|+|+++|
T Consensus 1 MaSK~-~llL~l~LA~lL 17 (95)
T PF07172_consen 1 MASKA-FLLLGLLLAALL 17 (95)
T ss_pred CchhH-HHHHHHHHHHHH
Confidence 66555 444444443433
No 53
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=39.93 E-value=53 Score=26.28 Aligned_cols=36 Identities=19% Similarity=0.214 Sum_probs=24.6
Q ss_pred eeEEEEEEeCCCCcEEEEEEeCCCCceeEecCCCCCCCC
Q 019849 61 GYYSVTLKIGNPPKLYELDIDTGSDLTWVQCNAPCTGCT 99 (335)
Q Consensus 61 ~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~c~~C~ 99 (335)
..+|++++|+. ++.++.+|||...+-+... -+..|.
T Consensus 23 ~mLyI~~~ing--~~vkA~VDtGAQ~tims~~-~a~r~g 58 (124)
T PF09668_consen 23 SMLYINCKING--VPVKAFVDTGAQSTIMSKS-CAERCG 58 (124)
T ss_dssp ---EEEEEETT--EEEEEEEETT-SS-EEEHH-HHHHTT
T ss_pred ceEEEEEEECC--EEEEEEEeCCCCccccCHH-HHHHcC
Confidence 46789999996 9999999999999888765 223444
No 54
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=37.14 E-value=45 Score=25.69 Aligned_cols=27 Identities=22% Similarity=0.228 Sum_probs=20.1
Q ss_pred EEEEeCCCCc----EEEEEEeCCCCcee-Eec
Q 019849 65 VTLKIGNPPK----LYELDIDTGSDLTW-VQC 91 (335)
Q Consensus 65 ~~i~iGtP~q----~~~v~~DTGSs~~W-v~~ 91 (335)
+++.|..|.| ++.+++|||.+..- ++.
T Consensus 2 ~~v~~~~p~~~~~~~v~~LVDTGat~~~~l~~ 33 (107)
T TIGR03698 2 LDVELSNPKNPEFMEVRALVDTGFSGFLLVPP 33 (107)
T ss_pred EEEEEeCCCCCCceEEEEEEECCCCeEEecCH
Confidence 5778888733 67899999998664 543
No 55
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=36.79 E-value=67 Score=28.81 Aligned_cols=18 Identities=28% Similarity=0.268 Sum_probs=15.5
Q ss_pred EEEEEEeCCCCceeEecC
Q 019849 75 LYELDIDTGSDLTWVQCN 92 (335)
Q Consensus 75 ~~~v~~DTGSs~~Wv~~~ 92 (335)
...++||||++.+.+|..
T Consensus 176 ~~~ai~DTGTs~~~lp~~ 193 (265)
T cd05476 176 SGGTIIDSGTTLTYLPDP 193 (265)
T ss_pred CCcEEEeCCCcceEcCcc
Confidence 456899999999999876
No 56
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=36.55 E-value=30 Score=31.64 Aligned_cols=44 Identities=20% Similarity=0.283 Sum_probs=26.7
Q ss_pred eeeeeeeCCCCCeeEEEE---EEeCCCC--------cEEEEEEeCCCCceeEecC
Q 019849 49 AVFPITGNVYPLGYYSVT---LKIGNPP--------KLYELDIDTGSDLTWVQCN 92 (335)
Q Consensus 49 ~~~pl~~~~~~~~~Y~~~---i~iGtP~--------q~~~v~~DTGSs~~Wv~~~ 92 (335)
.-.|+..+......|.++ |+||... ....++||||++++.+|..
T Consensus 134 ~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTt~~~lp~~ 188 (299)
T cd05472 134 SFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRLPPS 188 (299)
T ss_pred eECCCccCCCCCCeEEEeeEEEEECCEECCCCccccCCCCeEEeCCCcceecCHH
Confidence 345654221123456544 5777421 2236899999999999865
No 57
>COG4246 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.95 E-value=1.3e+02 Score=27.50 Aligned_cols=25 Identities=16% Similarity=0.310 Sum_probs=18.8
Q ss_pred EEEEeCCCCcEEEEEEeCCCCceeEecC
Q 019849 65 VTLKIGNPPKLYELDIDTGSDLTWVQCN 92 (335)
Q Consensus 65 ~~i~iGtP~q~~~v~~DTGSs~~Wv~~~ 92 (335)
..|.++--.+.|..+.|||- |+..+
T Consensus 77 Sairf~~dG~~fiav~DtG~---wfeg~ 101 (340)
T COG4246 77 SAIRFLPDGSQFIAVTDTGH---WFEGK 101 (340)
T ss_pred heeEeccCCceeEEEeecCc---eEEEE
Confidence 34566666789999999997 76554
No 58
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=31.71 E-value=69 Score=25.88 Aligned_cols=30 Identities=17% Similarity=0.235 Sum_probs=25.1
Q ss_pred eeEEEEEEeCCCCcEEEEEEeCCCCceeEecC
Q 019849 61 GYYSVTLKIGNPPKLYELDIDTGSDLTWVQCN 92 (335)
Q Consensus 61 ~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~ 92 (335)
..-.+.+.|.+ ++..++||+|++...+...
T Consensus 20 ~vi~g~~~I~~--~~~~vLiDSGAThsFIs~~ 49 (135)
T PF08284_consen 20 DVITGTFLINS--IPASVLIDSGATHSFISSS 49 (135)
T ss_pred CeEEEEEEecc--EEEEEEEecCCCcEEccHH
Confidence 45668888887 9999999999999888654
No 59
>PF15240 Pro-rich: Proline-rich
Probab=31.61 E-value=22 Score=30.21 Aligned_cols=23 Identities=13% Similarity=0.140 Sum_probs=10.7
Q ss_pred HHHHHHHhcccccccccCCCCCC
Q 019849 12 LVLLMFATFQGCFSEANQPPSKK 34 (335)
Q Consensus 12 ~~l~l~~~~~~~~~~~~~~~~~~ 34 (335)
|++||.++|++..+|-.....+.
T Consensus 2 LlVLLSvALLALSSAQ~~dEdv~ 24 (179)
T PF15240_consen 2 LLVLLSVALLALSSAQSTDEDVS 24 (179)
T ss_pred hhHHHHHHHHHhhhccccccccc
Confidence 34444444444455544444443
No 60
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=30.06 E-value=58 Score=30.15 Aligned_cols=32 Identities=22% Similarity=0.290 Sum_probs=22.8
Q ss_pred eeEEEE---EEeCCC-----CcEEEEEEeCCCCceeEecC
Q 019849 61 GYYSVT---LKIGNP-----PKLYELDIDTGSDLTWVQCN 92 (335)
Q Consensus 61 ~~Y~~~---i~iGtP-----~q~~~v~~DTGSs~~Wv~~~ 92 (335)
++|.++ |.||.. .+...++||||++.+++|..
T Consensus 188 ~~w~v~l~~i~v~g~~~~~~~~~~~aivDTGTs~~~lP~~ 227 (317)
T cd06098 188 GYWQFEMGDVLIGGKSTGFCAGGCAAIADSGTSLLAGPTT 227 (317)
T ss_pred cEEEEEeCeEEECCEEeeecCCCcEEEEecCCcceeCCHH
Confidence 455554 577752 23467999999999999865
No 61
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=29.85 E-value=59 Score=29.35 Aligned_cols=32 Identities=28% Similarity=0.321 Sum_probs=23.1
Q ss_pred eeEEEE---EEeCC---CCcEEEEEEeCCCCceeEecC
Q 019849 61 GYYSVT---LKIGN---PPKLYELDIDTGSDLTWVQCN 92 (335)
Q Consensus 61 ~~Y~~~---i~iGt---P~q~~~v~~DTGSs~~Wv~~~ 92 (335)
..|.+. |+||. +.....++||||++.+.+|..
T Consensus 157 ~~y~v~l~~i~vg~~~~~~~~~~~ivDTGTt~t~lp~~ 194 (273)
T cd05475 157 KHYSPGPASLLFNGQPTGGKGLEVVFDSGSSYTYFNAQ 194 (273)
T ss_pred CeEEEeEeEEEECCEECcCCCceEEEECCCceEEcCCc
Confidence 456544 57774 223467999999999999876
No 62
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=26.27 E-value=65 Score=29.11 Aligned_cols=32 Identities=22% Similarity=0.402 Sum_probs=22.9
Q ss_pred eeEEEE---EEeCCC----CcEEEEEEeCCCCceeEecC
Q 019849 61 GYYSVT---LKIGNP----PKLYELDIDTGSDLTWVQCN 92 (335)
Q Consensus 61 ~~Y~~~---i~iGtP----~q~~~v~~DTGSs~~Wv~~~ 92 (335)
.+|.++ |.||.- .....++||||++.+++|..
T Consensus 177 ~~w~v~l~~i~v~~~~~~~~~~~~~iiDSGTs~~~lP~~ 215 (278)
T cd06097 177 GFWQFTSTSYTVGGDAPWSRSGFSAIADTGTTLILLPDA 215 (278)
T ss_pred cEEEEEEeeEEECCcceeecCCceEEeecCCchhcCCHH
Confidence 455544 466642 35678999999999999865
No 63
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=25.08 E-value=55 Score=26.44 Aligned_cols=22 Identities=23% Similarity=0.428 Sum_probs=18.4
Q ss_pred ccEEEeccccceeeCHHHHHHH
Q 019849 274 LQIIFDSGSSYTYFNSQAYKTT 295 (335)
Q Consensus 274 ~~~iiDSGTs~~~lp~~~~~~l 295 (335)
..++||||++-.++..+....+
T Consensus 33 ~~vLiDSGAThsFIs~~~a~~~ 54 (135)
T PF08284_consen 33 ASVLIDSGATHSFISSSFAKKL 54 (135)
T ss_pred EEEEEecCCCcEEccHHHHHhc
Confidence 4689999999999988876654
No 64
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=24.21 E-value=56 Score=27.51 Aligned_cols=23 Identities=26% Similarity=0.564 Sum_probs=19.8
Q ss_pred CccEEEeccccceeeCHHHHHHH
Q 019849 273 GLQIIFDSGSSYTYFNSQAYKTT 295 (335)
Q Consensus 273 ~~~~iiDSGTs~~~lp~~~~~~l 295 (335)
...+++|||+...+.-.++.+.|
T Consensus 45 ~i~vLfDSGSPTSfIr~di~~kL 67 (177)
T PF12384_consen 45 PIKVLFDSGSPTSFIRSDIVEKL 67 (177)
T ss_pred EEEEEEeCCCccceeehhhHHhh
Confidence 35799999999999999888766
No 65
>PLN03146 aspartyl protease family protein; Provisional
Probab=22.22 E-value=1.1e+02 Score=30.00 Aligned_cols=16 Identities=31% Similarity=0.582 Sum_probs=14.3
Q ss_pred EEEEeCCCCceeEecC
Q 019849 77 ELDIDTGSDLTWVQCN 92 (335)
Q Consensus 77 ~v~~DTGSs~~Wv~~~ 92 (335)
.++||||+++++++..
T Consensus 309 ~~iiDSGTt~t~Lp~~ 324 (431)
T PLN03146 309 NIIIDSGTTLTLLPSD 324 (431)
T ss_pred cEEEeCCccceecCHH
Confidence 5899999999999865
No 66
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=21.89 E-value=91 Score=29.69 Aligned_cols=16 Identities=13% Similarity=0.165 Sum_probs=14.1
Q ss_pred EEEEeCCCCceeEecC
Q 019849 77 ELDIDTGSDLTWVQCN 92 (335)
Q Consensus 77 ~v~~DTGSs~~Wv~~~ 92 (335)
.++||||++.+.++..
T Consensus 231 g~iiDSGTs~t~lp~~ 246 (362)
T cd05489 231 GVKLSTVVPYTVLRSD 246 (362)
T ss_pred cEEEecCCceEEECHH
Confidence 5999999999999865
No 67
>TIGR01165 cbiN cobalt transport protein. This model describes the cobalt transporter in bacteria and its equivalents in archaea. It principally functions in the ion uptake mechanism. It is a multisubunit transporter with two integral membrane proteins and two closely associated cytoplasmic subunits. This transporter belongs to the ABC transporter superfamily (ATP stands for ATP Binding Cassette). This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=21.67 E-value=81 Score=23.72 Aligned_cols=8 Identities=25% Similarity=-0.010 Sum_probs=5.6
Q ss_pred CcccchhH
Q 019849 1 MEEKGKRV 8 (335)
Q Consensus 1 ~~~~~~~~ 8 (335)
|+||....
T Consensus 1 m~~~~~~~ 8 (91)
T TIGR01165 1 MSMKKTIW 8 (91)
T ss_pred CCcchhHH
Confidence 77887653
No 68
>cd00303 retropepsin_like Retropepsins; pepsin-like aspartate proteases. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements, as well as eukaryotic dna-damage-inducible proteins (DDIs), and bacterial aspartate peptidases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples
Probab=21.36 E-value=71 Score=21.58 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=18.7
Q ss_pred ccEEEeccccceeeCHHHHHHH
Q 019849 274 LQIIFDSGSSYTYFNSQAYKTT 295 (335)
Q Consensus 274 ~~~iiDSGTs~~~lp~~~~~~l 295 (335)
..+++|||++...+..+.++..
T Consensus 10 ~~~liDtgs~~~~~~~~~~~~~ 31 (92)
T cd00303 10 VRALVDSGASVNFISESLAKKL 31 (92)
T ss_pred EEEEEcCCCcccccCHHHHHHc
Confidence 3689999999999999887754
No 69
>PF05585 DUF1758: Putative peptidase (DUF1758); InterPro: IPR008737 This is a family of nematode proteins of unknown function []. However, it seems likely that these proteins act as aspartic peptidases.
Probab=20.47 E-value=57 Score=27.04 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=18.8
Q ss_pred ccEEEeccccceeeCHHHHHHH
Q 019849 274 LQIIFDSGSSYTYFNSQAYKTT 295 (335)
Q Consensus 274 ~~~iiDSGTs~~~lp~~~~~~l 295 (335)
..++||||+..++.-+++.+.|
T Consensus 13 ~~~LlDsGSq~SfIt~~la~~L 34 (164)
T PF05585_consen 13 ARALLDSGSQRSFITESLANKL 34 (164)
T ss_pred EEEEEecCCchhHHhHHHHHHh
Confidence 5799999999999888877765
No 70
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=20.39 E-value=89 Score=29.03 Aligned_cols=28 Identities=25% Similarity=0.486 Sum_probs=20.2
Q ss_pred eEEEeCcEEccccCccEEEeccccceeeCHH
Q 019849 260 AELLFGGKSTGIKGLQIIFDSGSSYTYFNSQ 290 (335)
Q Consensus 260 ~~i~v~g~~~~~~~~~~iiDSGTs~~~lp~~ 290 (335)
..|.||.-. .+..++||||++.+++|-.
T Consensus 6 ~~i~vGtP~---Q~~~v~~DTGS~~~wv~~~ 33 (326)
T cd06096 6 IDIFIGNPP---QKQSLILDTGSSSLSFPCS 33 (326)
T ss_pred EEEEecCCC---eEEEEEEeCCCCceEEecC
Confidence 346677422 2357999999999999865
No 71
>PRK03719 ecotin; Provisional
Probab=20.29 E-value=4.1e+02 Score=22.43 Aligned_cols=12 Identities=42% Similarity=0.534 Sum_probs=9.8
Q ss_pred CeeEEEEEEeCC
Q 019849 60 LGYYSVTLKIGN 71 (335)
Q Consensus 60 ~~~Y~~~i~iGt 71 (335)
...|-++|-||-
T Consensus 60 e~~~kVEliiGk 71 (166)
T PRK03719 60 ESDYKVELLIGQ 71 (166)
T ss_pred hhHeeEEEecCC
Confidence 457999999994
Done!