BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019850
         (335 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1EU1|A Chain A, The Crystal Structure Of Rhodobacter Sphaeroides
           Dimethylsulfoxide Reductase Reveals Two Distinct
           Molybdenum Coordination Environments
          Length = 780

 Score = 32.0 bits (71), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 7/63 (11%)

Query: 50  LEPLWWAGMVTMIVGEVANFVAYV-YAPAVLVTPLGALSIIISAVLAHFMLKERLQKMGI 108
            E  W  G+V   + E ANFV Y  +    L  PLG  S +I       +  + ++KMG 
Sbjct: 559 FEDFWSEGIVEFPITEGANFVRYADFREDPLFNPLGTPSGLIE------IYSKNIEKMGY 612

Query: 109 LGC 111
             C
Sbjct: 613 DDC 615


>pdb|1UJT|A Chain A, Solution Structure Of The Second Fibronectin Type Iii
           Domain Of Human Kiaa1568 Protein
          Length = 120

 Score = 30.0 bits (66), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 12/32 (37%), Positives = 19/32 (59%)

Query: 116 VGSVVIVIHAPQEHTPNSVQEIWALATQPDFL 147
           +G V++ +H P   TP +VQ  W +  QP F+
Sbjct: 14  LGDVLVRLHNPVVLTPTTVQVTWTVDRQPQFI 45


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.137    0.411 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,821,665
Number of Sequences: 62578
Number of extensions: 323223
Number of successful extensions: 641
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 640
Number of HSP's gapped (non-prelim): 3
length of query: 335
length of database: 14,973,337
effective HSP length: 99
effective length of query: 236
effective length of database: 8,778,115
effective search space: 2071635140
effective search space used: 2071635140
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)