Query 019850
Match_columns 335
No_of_seqs 144 out of 728
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 05:02:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019850.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019850hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05653 Mg_trans_NIPA: Magnes 100.0 5.1E-63 1.1E-67 472.4 23.5 299 3-301 2-300 (300)
2 KOG2922 Uncharacterized conser 100.0 1.3E-63 2.8E-68 468.1 16.4 303 3-305 16-318 (335)
3 TIGR03340 phn_DUF6 phosphonate 99.3 1.6E-09 3.5E-14 102.3 22.3 252 9-291 2-281 (281)
4 PRK02971 4-amino-4-deoxy-L-ara 99.2 8.7E-11 1.9E-15 99.5 8.9 115 8-122 2-121 (129)
5 PF06027 DUF914: Eukaryotic pr 99.1 6.5E-08 1.4E-12 94.2 23.7 238 47-304 73-316 (334)
6 PRK11453 O-acetylserine/cystei 99.0 1.1E-07 2.4E-12 90.7 21.8 258 11-295 7-289 (299)
7 PRK15430 putative chlorampheni 98.9 1.3E-07 2.8E-12 90.2 19.0 121 1-122 1-144 (296)
8 PRK15051 4-amino-4-deoxy-L-ara 98.9 1.1E-08 2.3E-13 84.5 9.4 103 11-122 4-108 (111)
9 PLN00411 nodulin MtN21 family 98.9 1.1E-07 2.5E-12 93.5 18.3 221 64-301 91-336 (358)
10 TIGR00950 2A78 Carboxylate/Ami 98.8 6.4E-07 1.4E-11 82.8 20.0 205 55-288 51-259 (260)
11 TIGR00776 RhaT RhaT L-rhamnose 98.8 5.9E-07 1.3E-11 85.8 19.7 223 51-294 56-289 (290)
12 PRK11272 putative DMT superfam 98.8 8E-07 1.7E-11 84.5 19.5 212 56-296 74-288 (292)
13 PRK11689 aromatic amino acid e 98.8 4.4E-06 9.6E-11 79.6 24.6 263 9-293 5-287 (295)
14 PRK10532 threonine and homoser 98.8 3.5E-06 7.6E-11 80.2 23.6 264 5-303 9-291 (293)
15 TIGR00817 tpt Tpt phosphate/ph 98.7 1.3E-06 2.8E-11 83.3 19.1 225 54-301 69-301 (302)
16 PF10639 UPF0546: Uncharacteri 98.6 8.3E-08 1.8E-12 79.3 6.1 103 19-121 7-112 (113)
17 COG2510 Predicted membrane pro 98.6 3.8E-07 8.3E-12 76.5 10.0 113 10-122 5-138 (140)
18 COG0697 RhaT Permeases of the 98.5 2.5E-05 5.4E-10 72.3 21.8 212 55-294 74-288 (292)
19 PF13536 EmrE: Multidrug resis 98.4 8E-07 1.7E-11 73.0 8.0 66 57-123 41-106 (113)
20 PF06800 Sugar_transport: Suga 98.3 5.5E-05 1.2E-09 71.6 17.0 214 52-290 43-268 (269)
21 PTZ00343 triose or hexose phos 98.2 0.00016 3.4E-09 71.0 19.8 69 53-122 117-185 (350)
22 PF08449 UAA: UAA transporter 98.2 0.0017 3.8E-08 62.1 25.4 224 52-293 66-297 (303)
23 PRK10452 multidrug efflux syst 98.2 2.5E-05 5.3E-10 65.4 10.7 74 53-126 32-106 (120)
24 PRK09541 emrE multidrug efflux 98.0 5.1E-05 1.1E-09 62.6 10.3 96 14-125 8-105 (110)
25 PRK10532 threonine and homoser 98.0 2.4E-05 5.3E-10 74.4 9.3 124 7-130 147-288 (293)
26 TIGR00688 rarD rarD protein. T 98.0 0.00039 8.5E-09 64.5 16.2 62 61-122 80-141 (256)
27 PF00893 Multi_Drug_Res: Small 97.9 0.00011 2.4E-09 58.6 9.0 85 14-114 7-93 (93)
28 TIGR00950 2A78 Carboxylate/Ami 97.8 0.00029 6.2E-09 65.1 11.3 114 5-118 125-259 (260)
29 PF04142 Nuc_sug_transp: Nucle 97.7 0.001 2.3E-08 62.1 14.4 69 59-127 25-93 (244)
30 PRK13499 rhamnose-proton sympo 97.7 0.0024 5.2E-08 62.6 17.0 283 4-294 3-342 (345)
31 PLN00411 nodulin MtN21 family 97.7 0.00018 3.9E-09 70.9 9.2 123 5-128 186-333 (358)
32 PRK11689 aromatic amino acid e 97.6 0.00029 6.3E-09 67.1 8.8 115 7-122 155-286 (295)
33 PF00892 EamA: EamA-like trans 97.6 7.6E-05 1.6E-09 60.3 3.9 68 54-121 57-124 (126)
34 TIGR03340 phn_DUF6 phosphonate 97.5 0.00019 4E-09 67.9 6.8 113 8-120 144-280 (281)
35 PRK10650 multidrug efflux syst 97.5 0.0012 2.5E-08 54.5 10.5 73 49-121 32-106 (109)
36 PRK11272 putative DMT superfam 97.5 0.00077 1.7E-08 64.1 10.2 117 6-122 148-284 (292)
37 KOG4510 Permease of the drug/m 97.5 0.00036 7.7E-09 65.7 7.3 268 7-298 37-330 (346)
38 PRK11431 multidrug efflux syst 97.4 0.0015 3.3E-08 53.4 10.0 72 50-121 27-100 (105)
39 PRK11453 O-acetylserine/cystei 97.3 0.0018 4E-08 61.7 11.0 115 7-121 142-285 (299)
40 PRK15051 4-amino-4-deoxy-L-ara 97.3 0.007 1.5E-07 49.8 12.0 80 208-294 31-110 (111)
41 COG2076 EmrE Membrane transpor 97.2 0.003 6.6E-08 51.6 9.4 72 50-121 28-101 (106)
42 PRK10452 multidrug efflux syst 97.1 0.011 2.3E-07 49.6 11.9 66 226-297 42-107 (120)
43 COG2510 Predicted membrane pro 97.1 0.0038 8.2E-08 52.8 8.7 56 232-294 85-140 (140)
44 PRK09541 emrE multidrug efflux 97.0 0.015 3.2E-07 48.0 11.9 80 207-295 26-105 (110)
45 KOG2234 Predicted UDP-galactos 96.8 0.054 1.2E-06 53.0 15.4 75 54-128 95-169 (345)
46 COG0697 RhaT Permeases of the 96.8 0.0082 1.8E-07 55.4 9.2 115 7-122 153-286 (292)
47 PRK11431 multidrug efflux syst 96.7 0.039 8.4E-07 45.1 11.5 78 206-292 24-101 (105)
48 PRK02971 4-amino-4-deoxy-L-ara 96.5 0.11 2.4E-06 43.9 13.4 74 217-296 51-125 (129)
49 PRK10650 multidrug efflux syst 96.4 0.021 4.5E-07 47.1 8.3 77 206-291 30-106 (109)
50 COG2076 EmrE Membrane transpor 96.4 0.067 1.4E-06 43.8 10.9 78 207-293 26-103 (106)
51 COG2962 RarD Predicted permeas 96.3 0.68 1.5E-05 44.3 19.1 117 5-121 4-142 (293)
52 KOG2765 Predicted membrane pro 96.3 0.12 2.6E-06 51.0 14.2 62 69-130 177-238 (416)
53 PRK15430 putative chlorampheni 95.9 0.018 3.9E-07 54.8 6.4 61 62-122 224-284 (296)
54 PF06027 DUF914: Eukaryotic pr 95.9 0.078 1.7E-06 52.0 10.8 123 3-130 163-312 (334)
55 KOG3912 Predicted integral mem 95.8 0.87 1.9E-05 43.7 17.1 72 53-124 88-159 (372)
56 PF00893 Multi_Drug_Res: Small 95.7 0.089 1.9E-06 41.8 8.9 66 207-277 25-90 (93)
57 PF06800 Sugar_transport: Suga 95.2 0.14 3.1E-06 48.6 9.8 88 211-301 42-130 (269)
58 PF03151 TPT: Triose-phosphate 95.1 0.17 3.7E-06 42.7 9.1 112 9-120 1-150 (153)
59 PF13536 EmrE: Multidrug resis 95.0 0.59 1.3E-05 37.9 11.8 65 226-298 47-111 (113)
60 COG5006 rhtA Threonine/homoser 95.0 0.25 5.4E-06 46.6 10.4 124 5-128 145-287 (292)
61 TIGR00776 RhaT RhaT L-rhamnose 95.0 0.044 9.5E-07 52.3 5.7 114 7-122 151-287 (290)
62 KOG1583 UDP-N-acetylglucosamin 94.6 0.73 1.6E-05 44.0 12.4 79 52-130 65-144 (330)
63 TIGR00817 tpt Tpt phosphate/ph 94.3 0.058 1.2E-06 51.3 4.6 117 5-121 142-291 (302)
64 PF00892 EamA: EamA-like trans 93.5 0.2 4.4E-06 39.9 5.9 70 216-292 56-125 (126)
65 KOG2766 Predicted membrane pro 93.3 0.74 1.6E-05 43.6 9.7 62 69-130 96-157 (336)
66 TIGR00803 nst UDP-galactose tr 91.7 0.97 2.1E-05 41.0 8.4 115 5-119 82-220 (222)
67 COG5006 rhtA Threonine/homoser 91.3 14 0.0003 35.2 17.6 196 66-292 86-284 (292)
68 KOG4314 Predicted carbohydrate 90.0 12 0.00027 34.3 13.5 59 66-124 68-126 (290)
69 PF10639 UPF0546: Uncharacteri 89.9 1.2 2.6E-05 36.9 6.5 74 207-290 38-111 (113)
70 COG4975 GlcU Putative glucose 89.4 0.48 1E-05 44.5 4.2 221 48-294 53-286 (288)
71 KOG1441 Glucose-6-phosphate/ph 89.3 0.77 1.7E-05 44.7 5.8 72 51-123 84-155 (316)
72 KOG4831 Unnamed protein [Funct 88.6 0.76 1.6E-05 37.7 4.3 77 45-122 46-124 (125)
73 PF06379 RhaT: L-rhamnose-prot 88.1 14 0.00029 36.5 13.3 225 62-293 84-340 (344)
74 COG1742 Uncharacterized conser 87.4 3.7 8E-05 33.5 7.5 46 81-127 62-107 (109)
75 KOG1580 UDP-galactose transpor 87.4 19 0.00042 33.9 13.2 191 59-278 93-302 (337)
76 PRK02237 hypothetical protein; 85.1 3.7 8.1E-05 33.7 6.6 46 81-127 63-108 (109)
77 PRK13499 rhamnose-proton sympo 83.4 6.2 0.00013 39.0 8.6 61 233-293 92-153 (345)
78 PTZ00343 triose or hexose phos 79.4 4.1 8.8E-05 39.9 5.9 51 70-120 295-345 (350)
79 PF08449 UAA: UAA transporter 77.4 13 0.00028 35.4 8.6 115 6-120 152-294 (303)
80 COG4975 GlcU Putative glucose 76.6 2 4.4E-05 40.4 2.6 62 233-296 78-139 (288)
81 PF02694 UPF0060: Uncharacteri 73.3 4.1 9E-05 33.4 3.3 45 82-127 62-106 (107)
82 PF01306 LacY_symp: LacY proto 72.7 33 0.00072 34.7 10.4 75 80-154 143-230 (412)
83 PF05653 Mg_trans_NIPA: Magnes 71.3 26 0.00056 33.8 9.0 61 233-300 69-129 (300)
84 TIGR00803 nst UDP-galactose tr 70.1 59 0.0013 29.2 10.7 56 227-289 165-220 (222)
85 KOG2765 Predicted membrane pro 66.3 17 0.00036 36.4 6.4 120 4-123 243-390 (416)
86 PF15048 OSTbeta: Organic solu 66.2 7.5 0.00016 32.7 3.5 39 258-296 21-59 (125)
87 PF04142 Nuc_sug_transp: Nucle 64.2 69 0.0015 29.8 10.0 109 5-113 111-243 (244)
88 COG3169 Uncharacterized protei 64.0 6.6 0.00014 31.8 2.6 106 3-121 5-113 (116)
89 PF04657 DUF606: Protein of un 63.9 60 0.0013 27.5 8.8 39 81-119 95-137 (138)
90 PF07857 DUF1632: CEO family ( 61.9 29 0.00062 32.8 7.0 49 249-298 86-139 (254)
91 PF08173 YbgT_YccB: Membrane b 61.8 11 0.00023 23.5 2.7 23 1-23 1-23 (28)
92 TIGR02106 cyd_oper_ybgT cyd op 60.6 11 0.00024 23.8 2.7 24 1-24 1-24 (30)
93 PRK14749 hypothetical protein; 59.0 17 0.00037 22.9 3.2 24 1-24 1-24 (30)
94 COG2962 RarD Predicted permeas 58.4 62 0.0013 31.2 8.6 72 207-281 65-136 (293)
95 PF04342 DUF486: Protein of un 57.3 9.7 0.00021 31.2 2.5 93 9-120 3-105 (108)
96 TIGR00881 2A0104 phosphoglycer 52.6 1.8E+02 0.004 26.8 11.0 15 163-177 52-66 (379)
97 PF03605 DcuA_DcuB: Anaerobic 48.7 38 0.00083 33.7 5.7 49 78-126 167-242 (364)
98 PF08507 COPI_assoc: COPI asso 42.8 44 0.00095 28.1 4.5 29 256-291 75-103 (136)
99 PF11970 Git3_C: G protein-cou 42.3 48 0.001 25.4 4.2 50 240-289 13-62 (76)
100 PF04531 Phage_holin_1: Bacter 41.9 1.5E+02 0.0032 23.0 7.0 23 47-69 6-28 (84)
101 TIGR00688 rarD rarD protein. T 39.7 1.7E+02 0.0037 26.7 8.3 48 230-280 86-133 (256)
102 KOG4536 Predicted membrane pro 39.4 1.1E+02 0.0024 29.5 6.9 106 208-326 223-332 (347)
103 KOG1580 UDP-galactose transpor 38.5 24 0.00053 33.3 2.4 41 86-126 276-316 (337)
104 COG2271 UhpC Sugar phosphate p 38.3 4.6E+02 0.01 26.9 13.0 53 271-323 183-235 (448)
105 COG4890 Predicted outer membra 37.5 81 0.0018 20.6 3.9 24 1-24 1-24 (37)
106 PF06570 DUF1129: Protein of u 33.4 3E+02 0.0064 24.7 8.7 56 51-106 143-204 (206)
107 COG4858 Uncharacterized membra 31.2 3.9E+02 0.0085 24.4 8.7 58 50-107 157-220 (226)
108 KOG1581 UDP-galactose transpor 31.0 5.2E+02 0.011 25.4 19.2 68 61-128 93-160 (327)
109 PRK06638 NADH:ubiquinone oxido 30.2 4.1E+02 0.0088 23.9 9.0 35 258-298 135-171 (198)
110 KOG3030 Lipid phosphate phosph 26.6 6.1E+02 0.013 24.8 10.1 78 207-292 184-262 (317)
111 PF05084 GRA6: Granule antigen 25.4 43 0.00094 29.6 1.6 62 259-321 4-83 (215)
112 KOG1442 GDP-fucose transporter 25.1 36 0.00078 32.8 1.2 55 63-117 114-168 (347)
113 COG3238 Uncharacterized protei 24.7 92 0.002 27.1 3.5 39 80-118 99-141 (150)
114 KOG2533 Permease of the major 24.4 8E+02 0.017 25.4 13.6 42 227-268 388-430 (495)
115 PF11297 DUF3098: Protein of u 23.8 1.2E+02 0.0025 23.0 3.5 28 271-298 5-32 (69)
116 PF06966 DUF1295: Protein of u 23.4 5.8E+02 0.013 23.4 8.9 58 7-65 122-186 (235)
117 PF03601 Cons_hypoth698: Conse 23.0 6.9E+02 0.015 24.1 11.8 27 241-267 240-266 (305)
118 PF11022 DUF2611: Protein of u 22.2 64 0.0014 24.5 1.8 20 279-298 19-38 (71)
119 PF07457 DUF1516: Protein of u 21.6 4.5E+02 0.0098 21.5 8.0 44 255-298 46-90 (110)
120 KOG1443 Predicted integral mem 20.5 8.3E+02 0.018 24.1 14.3 59 65-123 98-156 (349)
No 1
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=100.00 E-value=5.1e-63 Score=472.44 Aligned_cols=299 Identities=46% Similarity=0.807 Sum_probs=284.6
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCccCCcccccccchhHHHHHHHHHHHHHHHHHHHhhcchhhhhc
Q 019850 3 LSENSKGLILAVASSAFIGSSFILKKKGLKRAGASGTRAGVGGYTYLLEPLWWAGMVTMIVGEVANFVAYVYAPAVLVTP 82 (335)
Q Consensus 3 ~~~~~iGvllAl~sa~~~a~g~vlqk~~~~~~~~~~~~~~~~~~~~~~~p~w~~G~~l~~~g~~~~~~al~~~p~slv~P 82 (335)
.+++++|+++|++||++++.|.++|||++.|.++++.|++.+.++|+|||+||.|+.++++|++++++||+++|+++|||
T Consensus 2 ~~~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~~~~~~~l~~~~W~~G~~~~~~g~~~~~~Al~~ap~slv~P 81 (300)
T PF05653_consen 2 NTDFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAGSGGRSYLRRPLWWIGLLLMVLGEILNFVALGFAPASLVAP 81 (300)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHhhHHHHHHHHHHhcchHHHHHHHHhhhHHHHHH
Confidence 36899999999999999999999999999998876555544567999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhccccccchhHHHHHHhhheeeEEEecCCCCCCCCHHHHHHHhcCchhhHHHHHHHHHHHHHhh
Q 019850 83 LGALSIIISAVLAHFMLKERLQKMGILGCITCIVGSVVIVIHAPQEHTPNSVQEIWALATQPDFLIYVAATVSVVLALVL 162 (335)
Q Consensus 83 l~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~l~~~~~~~~~~~~t~~el~~~~~~~~fl~y~~~~~~v~~~l~~ 162 (335)
++++++++|++++++++|||++++|++|+++++.|+++++.++|++++.+|++|+.+++++|.|+.|+++..++.+.+++
T Consensus 82 lg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~~~~~~~t~~~l~~~~~~~~fl~y~~~~~~~~~~L~~ 161 (300)
T PF05653_consen 82 LGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAPKEEPIHTLDELIALLSQPGFLVYFILVLVLILILIF 161 (300)
T ss_pred HHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCCCCCCcCCHHHHHHHhcCcceehhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988887777777
Q ss_pred eecccCCCchhHHHHHHHHhhhHHHHHHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 019850 163 HFEPRCGQTNILVYLGICSLMGSLTVVSIKAIGIAIKLTLDGISQIAYPQTWFFLTVAAVCVVTQLNYLNKALDTFNAAI 242 (335)
Q Consensus 163 ~~~~r~~~~~~~~~~~i~gllgg~svl~~K~v~~~l~~~~~g~~~f~~~~~y~~l~~~~~~~l~Q~~~ln~aL~~~~~~~ 242 (335)
+..+|+++++...|.++|+++|+++++++|++++.++++++|++||++|.+|++++.+++|++.|++|||+||++||++.
T Consensus 162 ~~~~r~g~~~i~vyi~i~sl~Gs~tvl~~K~i~~~i~~~~~g~~~f~~~~~y~l~~~~v~~~~~Q~~~LN~aL~~fd~~~ 241 (300)
T PF05653_consen 162 FIKPRYGRRNILVYISICSLIGSFTVLSAKAISILIKLTFSGDNQFTYPLTYLLLLVLVVTAVLQLYYLNKALKRFDTSL 241 (300)
T ss_pred hhcchhcccceEEEEEEeccccchhhhHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccceE
Confidence 78889899999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHHhhhccccCCcCCC
Q 019850 243 VSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGTIILHATREHEQTT 301 (335)
Q Consensus 243 v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~l~i~Gv~lLs~~~~~~~~~ 301 (335)
++|++|++||++++++|.++|||+.+++++++.++.+|+.+++.||++|++++|+++.|
T Consensus 242 V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL~~~~~~~~~~ 300 (300)
T PF05653_consen 242 VVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLLSSSKDKEISQ 300 (300)
T ss_pred EEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhheeeccCchhccC
Confidence 99999999999999999999999999999999999999999999999999999988754
No 2
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.3e-63 Score=468.10 Aligned_cols=303 Identities=66% Similarity=1.124 Sum_probs=293.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCccCCcccccccchhHHHHHHHHHHHHHHHHHHHhhcchhhhhc
Q 019850 3 LSENSKGLILAVASSAFIGSSFILKKKGLKRAGASGTRAGVGGYTYLLEPLWWAGMVTMIVGEVANFVAYVYAPAVLVTP 82 (335)
Q Consensus 3 ~~~~~iGvllAl~sa~~~a~g~vlqk~~~~~~~~~~~~~~~~~~~~~~~p~w~~G~~l~~~g~~~~~~al~~~p~slv~P 82 (335)
.+++++|+.+|+.|+++++.++++|||+++|....+.|++.+..+|++.|+||+|++.|++|+++||+||+|+|+++|+|
T Consensus 16 ~~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~~~~ra~~gg~~yl~~~~Ww~G~ltm~vGei~NFaAYaFAPasLVtP 95 (335)
T KOG2922|consen 16 SSDNIIGLVLAISSSIFIGSSFILKKKGLKRAGASGLRAGEGGYGYLKEPLWWAGMLTMIVGEIANFAAYAFAPASLVTP 95 (335)
T ss_pred ccCceeeeeehhhccEEEeeehhhhHHHHHHHhhhcccccCCCcchhhhHHHHHHHHHHHHHhHhhHHHHhhchHhhhcc
Confidence 46889999999999999999999999999998887778877789999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhccccccchhHHHHHHhhheeeEEEecCCCCCCCCHHHHHHHhcCchhhHHHHHHHHHHHHHhh
Q 019850 83 LGALSIIISAVLAHFMLKERLQKMGILGCITCIVGSVVIVIHAPQEHTPNSVQEIWALATQPDFLIYVAATVSVVLALVL 162 (335)
Q Consensus 83 l~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~l~~~~~~~~~~~~t~~el~~~~~~~~fl~y~~~~~~v~~~l~~ 162 (335)
|+++++++++++|++++||+++..+.+|++++++|.++++.++|++++..|++|+++++++|+|++|+++.+++++++++
T Consensus 96 LGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~i~t~~el~~~~~~~~Fliy~~~iil~~~il~~ 175 (335)
T KOG2922|consen 96 LGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQEIESVEEVWELATEPGFLVYVIIIILIVLILIF 175 (335)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcccccccHHHHHHHhcCccHHHHHHHHHHHHHHHhe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888889
Q ss_pred eecccCCCchhHHHHHHHHhhhHHHHHHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 019850 163 HFEPRCGQTNILVYLGICSLMGSLTVVSIKAIGIAIKLTLDGISQIAYPQTWFFLTVAAVCVVTQLNYLNKALDTFNAAI 242 (335)
Q Consensus 163 ~~~~r~~~~~~~~~~~i~gllgg~svl~~K~v~~~l~~~~~g~~~f~~~~~y~~l~~~~~~~l~Q~~~ln~aL~~~~~~~ 242 (335)
+..||++++++++|.++|+++|++|+++.|+++++++++++|++|+.+|.+|.++...+.|+..|++||||||+.||++.
T Consensus 176 ~~~p~~g~tnilvyi~i~s~iGS~tV~svKalg~aiklt~~g~~ql~~~~ty~~~l~~~~~~~~Q~~yLNkAL~~fntsl 255 (335)
T KOG2922|consen 176 FYAPRYGQTNILVYIGICSLIGSLTVMSVKALGIAIKLTFSGNNQLFYPLTWIFLLVVATCVSTQMNYLNKALDLFNTSI 255 (335)
T ss_pred eecccccccceeehhhHhhhhcceeeeeHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHHhhhccccCCcCCCCCCC
Q 019850 243 VSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGTIILHATREHEQTTAPVG 305 (335)
Q Consensus 243 v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~l~i~Gv~lLs~~~~~~~~~~~~~ 305 (335)
+.|++|++||+.++++|.|+|+||++.+..+...+++|+..++.|+++|.+.+|.+.......
T Consensus 256 V~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti~~G~flL~~~kd~~~~~~s~~ 318 (335)
T KOG2922|consen 256 VSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFVTIFLGIFLLHRTKDMEISLASYN 318 (335)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHhhheeeEeeeeccccccccccc
Confidence 999999999999999999999999999999999999999999999999999999987655533
No 3
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.25 E-value=1.6e-09 Score=102.35 Aligned_cols=252 Identities=18% Similarity=0.183 Sum_probs=145.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhccC-C-----------C----c-cCCcccccccchhH---HHHHHHHHHHHHHH
Q 019850 9 GLILAVASSAFIGSSFILKKKGLKRAGAS-G-----------T----R-AGVGGYTYLLEPLW---WAGMVTMIVGEVAN 68 (335)
Q Consensus 9 GvllAl~sa~~~a~g~vlqk~~~~~~~~~-~-----------~----~-~~~~~~~~~~~p~w---~~G~~l~~~g~~~~ 68 (335)
..++.+.++++.+...++.|+...+.+.- . + + .+. ..+..++..| ..+.........+.
T Consensus 2 ~~~~~~~aa~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (281)
T TIGR03340 2 ALTLVVFSALMHAGWNLMAKSHADKEPDFLWWALLAHSVLLTPYGLWYLAQV-GWSRLPATFWLLLAISAVANMVYFLGL 80 (281)
T ss_pred cHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhcccC-CCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 35788999999999999999765442210 0 0 0 000 0111122222 12333345666788
Q ss_pred HHHHhhcchhhhhchhhHHHHHHHHHHHHHhccccccchhHHHHHHhhheeeEEEecCCCCCCCCHHHHHHHhcCchhhH
Q 019850 69 FVAYVYAPAVLVTPLGALSIIISAVLAHFMLKERLQKMGILGCITCIVGSVVIVIHAPQEHTPNSVQEIWALATQPDFLI 148 (335)
Q Consensus 69 ~~al~~~p~slv~Pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~l~~~~~~~~~~~~t~~el~~~~~~~~fl~ 148 (335)
..++...|.+..+|+...+.+++.+++.+++|||+++++|.|+.++..|+.++.. ++.+. .+ +....
T Consensus 81 ~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~--~~~~~-~~----------~~g~~ 147 (281)
T TIGR03340 81 AQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGL--SRFAQ-HR----------RKAYA 147 (281)
T ss_pred HHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc--ccccc-cc----------hhHHH
Confidence 8899999999999999999999999999999999999999999999999876643 22211 11 11111
Q ss_pred HHHHHHHHHHHHhhe-ecccCCCc-----hhHHHHHHHHhhhHH-HHHHHHHHHHHHHHhhcCCCc-chhhHHHHHHHHH
Q 019850 149 YVAATVSVVLALVLH-FEPRCGQT-----NILVYLGICSLMGSL-TVVSIKAIGIAIKLTLDGISQ-IAYPQTWFFLTVA 220 (335)
Q Consensus 149 y~~~~~~v~~~l~~~-~~~r~~~~-----~~~~~~~i~gllgg~-svl~~K~v~~~l~~~~~g~~~-f~~~~~y~~l~~~ 220 (335)
+..+..+ +...+. ..+|..++ ....+...+..+++. ..... ..+ ++... ...+..+.++...
T Consensus 148 ~~l~aal--~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~---~~~~~~~~~~~~~~~~~~~ 217 (281)
T TIGR03340 148 WALAAAL--GTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLY-----LKR---HGRSMFPYARQILPSATLG 217 (281)
T ss_pred HHHHHHH--HHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHH-----HHH---hccchhhhHHHHHHHHHHH
Confidence 2221111 111121 22222111 111122222222211 11100 000 11111 1222223333334
Q ss_pred HHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHHhhh
Q 019850 221 AVCVVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGTIIL 291 (335)
Q Consensus 221 ~~~~l~Q~~~ln~aL~~~~~~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~l~i~Gv~lL 291 (335)
.++......+.++++++.+++.+.+..+. .|+++++.|.++++|..+ +. ...|.++++.|+++|
T Consensus 218 ~~~s~l~~~l~~~al~~~~a~~~~~~~~l-~pv~a~l~g~~~lgE~~~--~~----~~iG~~lil~Gv~l~ 281 (281)
T TIGR03340 218 GLMIGGAYALVLWAMTRLPVATVVALRNT-SIVFAVVLGIWFLNERWY--LT----RLMGVCIIVAGLVVL 281 (281)
T ss_pred HHHHHHHHHHHHHHHhhCCceEEEeeccc-HHHHHHHHHHHHhCCCcc--HH----HHHHHHHHHHhHHhC
Confidence 44444455678899999999888888766 589999999999999643 33 446777788888764
No 4
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=99.19 E-value=8.7e-11 Score=99.46 Aligned_cols=115 Identities=17% Similarity=0.165 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCccC-Ccccccccch--hHHHHHHHHHHHHHHHHHHHhhcchhhhhchh
Q 019850 8 KGLILAVASSAFIGSSFILKKKGLKRAGASGTRAG-VGGYTYLLEP--LWWAGMVTMIVGEVANFVAYVYAPAVLVTPLG 84 (335)
Q Consensus 8 iGvllAl~sa~~~a~g~vlqk~~~~~~~~~~~~~~-~~~~~~~~~p--~w~~G~~l~~~g~~~~~~al~~~p~slv~Pl~ 84 (335)
+|.++.+.+.++.+.||++.|+|+.+.++.+.... ........+| +-+.|+.++++++.+|..+++..|++...|+.
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~~~~~~~~~~~~~~p~~~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~ 81 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRLPLLSHAWDFIAALLAFGLALRAVLLGLAGYALSMLCWLKALRYLPLSRAYPLL 81 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCCccchhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 47788999999999999999999988664221110 0012335567 78899999999999999999999999999999
Q ss_pred hHHHHHHHHHHHH--HhccccccchhHHHHHHhhheeeEE
Q 019850 85 ALSIIISAVLAHF--MLKERLQKMGILGCITCIVGSVVIV 122 (335)
Q Consensus 85 ~~~lv~~~~la~~--~l~e~~~~~~~~g~~li~~G~~l~~ 122 (335)
+...++..+.+.. ++||++|.++++|+++|++|+.++.
T Consensus 82 sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~ 121 (129)
T PRK02971 82 SLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLIN 121 (129)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 9999888888885 7999999999999999999988764
No 5
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.06 E-value=6.5e-08 Score=94.16 Aligned_cols=238 Identities=20% Similarity=0.243 Sum_probs=135.6
Q ss_pred ccccchhHHHHH--HHHHHHHHHHHHHHhhcchhhhhchhhHHHHHHHHHHHHHhccccccchhHHHHHHhhheeeEEEe
Q 019850 47 TYLLEPLWWAGM--VTMIVGEVANFVAYVYAPAVLVTPLGALSIIISAVLAHFMLKERLQKMGILGCITCIVGSVVIVIH 124 (335)
Q Consensus 47 ~~~~~p~w~~G~--~l~~~g~~~~~~al~~~p~slv~Pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~l~~~~ 124 (335)
+..++|+|.-=+ ++++.++-+...|+.+.+.+-+|=+.+.+++++++++.+++|||.++.+++|++++++|+++++..
T Consensus 73 ~~~~~~~w~y~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~s 152 (334)
T PF06027_consen 73 KVLKRPWWKYFLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVS 152 (334)
T ss_pred hhcchhHHHHHHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeee
Confidence 345555554433 336788889999999999999999999999999999999999999999999999999998887655
Q ss_pred cCCCCCCC-CHHHHHHHhcCchhhHHHHHHHHHHHHHhh-eecc-cCCCchhHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 019850 125 APQEHTPN-SVQEIWALATQPDFLIYVAATVSVVLALVL-HFEP-RCGQTNILVYLGICSLMGSLTVVSIKAIGIAIKLT 201 (335)
Q Consensus 125 ~~~~~~~~-t~~el~~~~~~~~fl~y~~~~~~v~~~l~~-~~~~-r~~~~~~~~~~~i~gllgg~svl~~K~v~~~l~~~ 201 (335)
....++.. +.+ +|..--.+++... .+.-+. ...+ .-++.+...+.+--|++|..-.. ..... +.
T Consensus 153 D~~~~~~~~~~~-------~~i~GDll~l~~a-~lya~~nV~~E~~v~~~~~~~~lg~~Glfg~ii~~-iq~~i--le-- 219 (334)
T PF06027_consen 153 DVLSGSDSSSGS-------NPILGDLLALLGA-ILYAVSNVLEEKLVKKAPRVEFLGMLGLFGFIISG-IQLAI--LE-- 219 (334)
T ss_pred cccccccCCCCC-------ccchhHHHHHHHH-HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH-HHHHh--ee--
Confidence 43222111 111 1111111111111 111111 1111 11122233344444444432111 11111 10
Q ss_pred hcCCCcc-hhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHhhcccCCCChhHHHHHHHH
Q 019850 202 LDGISQI-AYPQTWFFLTVAAVCVVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICG 280 (335)
Q Consensus 202 ~~g~~~f-~~~~~y~~l~~~~~~~l~Q~~~ln~aL~~~~~~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G 280 (335)
.++-..+ -++....+++....+...=-...+-.++..+++.+.--+ ..-..-+++.++.+|++. .++ ++..|
T Consensus 220 ~~~i~~~~w~~~~~~~~v~~~~~lf~~y~l~p~~l~~ssAt~~nLsL-LTsd~~ali~~i~~f~~~--~~~----ly~~a 292 (334)
T PF06027_consen 220 RSGIESIHWTSQVIGLLVGYALCLFLFYSLVPIVLRMSSATFFNLSL-LTSDFYALIIDIFFFGYK--FSW----LYILA 292 (334)
T ss_pred hhhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHHHhCccceeehHH-HHhhHHHHHHHHHhcCcc--ccH----HHHHH
Confidence 0111111 134444444444444332222344567777776554443 444555888899999984 323 47788
Q ss_pred HHHHHHHHhhhccccCCcCCCCCC
Q 019850 281 FITVLSGTIILHATREHEQTTAPV 304 (335)
Q Consensus 281 ~~l~i~Gv~lLs~~~~~~~~~~~~ 304 (335)
+++++.|.++...+++++.+++..
T Consensus 293 f~lIiiG~vvy~~~~~~~~~~~~~ 316 (334)
T PF06027_consen 293 FALIIIGFVVYNLAESPEEEARRN 316 (334)
T ss_pred HHHHHHHhheEEccCCcccccchh
Confidence 899999999997666555444433
No 6
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.98 E-value=1.1e-07 Score=90.74 Aligned_cols=258 Identities=18% Similarity=0.207 Sum_probs=139.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhccC---CCccC---Ccccccc---cc---hhHHHHHHHHHHHHHHHHHHHhh-cch
Q 019850 11 ILAVASSAFIGSSFILKKKGLKRAGAS---GTRAG---VGGYTYL---LE---PLWWAGMVTMIVGEVANFVAYVY-APA 77 (335)
Q Consensus 11 llAl~sa~~~a~g~vlqk~~~~~~~~~---~~~~~---~~~~~~~---~~---p~w~~G~~l~~~g~~~~~~al~~-~p~ 77 (335)
++++.++++-+......|.+..+.+.. ..|-. .-..... |+ .....|+........+.+.++.. .|.
T Consensus 7 l~~l~~~~~Wg~~~~~~k~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a 86 (299)
T PRK11453 7 VLALLVVVVWGLNFVVIKVGLHNMPPLMLAGLRFMLVAFPAIFFVARPKVPLNLLLGYGLTISFGQFAFLFCAINFGMPA 86 (299)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 456777888888888888766543321 01110 0000000 11 11112332223333455666666 477
Q ss_pred hhhhchhhHHHHHHHHHHHHHhccccccchhHHHHHHhhheeeEEEecCCCCCCCCHHHHHHHhcCchhhHHHHHHHHHH
Q 019850 78 VLVTPLGALSIIISAVLAHFMLKERLQKMGILGCITCIVGSVVIVIHAPQEHTPNSVQEIWALATQPDFLIYVAATVSVV 157 (335)
Q Consensus 78 slv~Pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~l~~~~~~~~~~~~t~~el~~~~~~~~fl~y~~~~~~v~ 157 (335)
+...-+....-+++.+++++++|||+++++++|+++..+|+.++... ..++...+ . .-..+.....+ .
T Consensus 87 ~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~-~~~~~~~~---~-------~G~~l~l~aal-~ 154 (299)
T PRK11453 87 GLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIED-SLNGQHVA---M-------LGFMLTLAAAF-S 154 (299)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccc-cCCCcchh---H-------HHHHHHHHHHH-H
Confidence 77777888888999999999999999999999999999998776521 11111111 0 01111111111 1
Q ss_pred HHHhheecccCCC----chhHHHHHHHHhhhHHHHHHHHHHHHHHHHhhcCC-------CcchhhHH-HHHHHHHHHHHH
Q 019850 158 LALVLHFEPRCGQ----TNILVYLGICSLMGSLTVVSIKAIGIAIKLTLDGI-------SQIAYPQT-WFFLTVAAVCVV 225 (335)
Q Consensus 158 ~~l~~~~~~r~~~----~~~~~~~~i~gllgg~svl~~K~v~~~l~~~~~g~-------~~f~~~~~-y~~l~~~~~~~l 225 (335)
-.......+|..+ .....+......+++.-.. .... . .++. ... ++.. +.++..++.+..
T Consensus 155 ~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~---~~~~~~~~~~~~~~-~~~~~~~l~~l~i~~t~ 226 (299)
T PRK11453 155 WACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFF---VASL-I---LDGSATMIHSLVTI-DMTTILSLMYLAFVATI 226 (299)
T ss_pred HHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHH---HHHH-H---hcCchhhhhhhccC-CHHHHHHHHHHHHHHHH
Confidence 1110112222111 1111111111222211110 0000 0 1111 112 2333 334555566777
Q ss_pred HHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHHhhhcccc
Q 019850 226 TQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGTIILHATR 295 (335)
Q Consensus 226 ~Q~~~ln~aL~~~~~~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~l~i~Gv~lLs~~~ 295 (335)
.+....++++++.++..+.+. ...+|+++++.|.+++||.. ++. ..+|.+++++|+++....+
T Consensus 227 ~~~~l~~~~l~~~~a~~~s~~-~~l~Pv~a~~~~~l~lgE~~--~~~----~~iG~~lI~~gv~l~~~~~ 289 (299)
T PRK11453 227 VGYGIWGTLLGRYETWRVAPL-SLLVPVVGLASAALLLDERL--TGL----QFLGAVLIMAGLYINVFGL 289 (299)
T ss_pred HHHHHHHHHHHhCCHHHHHHH-HHHHHHHHHHHHHHHhCCCc--cHH----HHHHHHHHHHHHHHHhcch
Confidence 788889999999988776664 56889999999999999953 344 3567778888888765444
No 7
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.90 E-value=1.3e-07 Score=90.17 Aligned_cols=121 Identities=20% Similarity=0.109 Sum_probs=90.4
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCC---Cc---------------cC-CcccccccchhH----HHH
Q 019850 1 MGLSENSKGLILAVASSAFIGSSFILKKKGLKRAGASG---TR---------------AG-VGGYTYLLEPLW----WAG 57 (335)
Q Consensus 1 ~~~~~~~iGvllAl~sa~~~a~g~vlqk~~~~~~~~~~---~~---------------~~-~~~~~~~~~p~w----~~G 57 (335)
|.++++..|.++++.++++.+...+.-|.. .+.+... .| .+ ...++..+++++ ..|
T Consensus 1 ~~~~~~~~g~~~~l~a~~~wg~~~~~~k~~-~~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (296)
T PRK15430 1 MDAKQTRQGVLLALAAYFIWGIAPAYFKLI-YYVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVS 79 (296)
T ss_pred CCchhhhhHHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHHHH
Confidence 677888999999999999998888887753 2211100 00 00 000011122322 245
Q ss_pred HHHHHHHHHHHHHHHhhcchhhhhchhhHHHHHHHHHHHHHhccccccchhHHHHHHhhheeeEE
Q 019850 58 MVTMIVGEVANFVAYVYAPAVLVTPLGALSIIISAVLAHFMLKERLQKMGILGCITCIVGSVVIV 122 (335)
Q Consensus 58 ~~l~~~g~~~~~~al~~~p~slv~Pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~l~~ 122 (335)
......+..+.+.++...|.+...-+....-++..+++.+++|||+++++|.|+++...|++++.
T Consensus 80 ~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~ 144 (296)
T PRK15430 80 AVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL 144 (296)
T ss_pred HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 56677788899999999999999999999999999999999999999999999999999988764
No 8
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.88 E-value=1.1e-08 Score=84.46 Aligned_cols=103 Identities=15% Similarity=0.181 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhccCCCccCCcccccccchhHHHHH--HHHHHHHHHHHHHHhhcchhhhhchhhHHH
Q 019850 11 ILAVASSAFIGSSFILKKKGLKRAGASGTRAGVGGYTYLLEPLWWAGM--VTMIVGEVANFVAYVYAPAVLVTPLGALSI 88 (335)
Q Consensus 11 llAl~sa~~~a~g~vlqk~~~~~~~~~~~~~~~~~~~~~~~p~w~~G~--~l~~~g~~~~~~al~~~p~slv~Pl~~~~l 88 (335)
++-++|.++-..|+++.|++.++.+.. + -.+++..+.+. ..+.+++.++..++...|++..+|+.++++
T Consensus 4 ~~l~~ai~~ev~g~~~lK~s~~~~~~~--~-------~~~~~l~~~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~ 74 (111)
T PRK15051 4 LTLVFASLLSVAGQLCQKQATRPVAIG--K-------RRKHIVLWLGLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNF 74 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCcc--h-------hhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHH
Confidence 445667777888999999985433210 0 11123344544 557889999999999999999999999999
Q ss_pred HHHHHHHHHHhccccccchhHHHHHHhhheeeEE
Q 019850 89 IISAVLAHFMLKERLQKMGILGCITCIVGSVVIV 122 (335)
Q Consensus 89 v~~~~la~~~l~e~~~~~~~~g~~li~~G~~l~~ 122 (335)
+++.+++.+++|||+|.++++|+.+++.|++++.
T Consensus 75 v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 75 VWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999987654
No 9
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.88 E-value=1.1e-07 Score=93.45 Aligned_cols=221 Identities=14% Similarity=0.194 Sum_probs=120.5
Q ss_pred HHHHHHHHHhhcchhhhhchhhHHHHHHHHHHHHH------hccccccchhHHHHHHhhheeeEEEecCCC------CCC
Q 019850 64 GEVANFVAYVYAPAVLVTPLGALSIIISAVLAHFM------LKERLQKMGILGCITCIVGSVVIVIHAPQE------HTP 131 (335)
Q Consensus 64 g~~~~~~al~~~p~slv~Pl~~~~lv~~~~la~~~------l~e~~~~~~~~g~~li~~G~~l~~~~~~~~------~~~ 131 (335)
...+...++.+.|.+...=+..+.-+++++++.++ +|||+++++++|+++...|+.++...+... ++.
T Consensus 91 ~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~ 170 (358)
T PLN00411 91 YVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPY 170 (358)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCccccccccccc
Confidence 34467889999999999999999999999999999 699999999999999999987654321110 000
Q ss_pred CCHHHHH--HHhcCchhhHHHHHHH-HHHHHHhh-eecc----cCCCchhHHHHHHHHhhhHHHHHHHHHHHHHHHHhhc
Q 019850 132 NSVQEIW--ALATQPDFLIYVAATV-SVVLALVL-HFEP----RCGQTNILVYLGICSLMGSLTVVSIKAIGIAIKLTLD 203 (335)
Q Consensus 132 ~t~~el~--~~~~~~~fl~y~~~~~-~v~~~l~~-~~~~----r~~~~~~~~~~~i~gllgg~svl~~K~v~~~l~~~~~ 203 (335)
.+..+.. ....+..+..-..+.. ..++.-.+ ...+ +++.. ..+......+++.-... ... . .+
T Consensus 171 ~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~--~~~t~~~~~~~~~~~~~---~~l-~---~~ 241 (358)
T PLN00411 171 LNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAA--FTVSFLYTVCVSIVTSM---IGL-V---VE 241 (358)
T ss_pred ccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH--hHHHHHHHHHHHHHHHH---HHH-H---Hc
Confidence 0000000 0000000110011111 11110011 1122 22221 11122222222221111 011 1 11
Q ss_pred CC--C-cch--hhHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHhhcccCCCChhHHHHHH
Q 019850 204 GI--S-QIA--YPQTWFFLTVAAVCVVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEI 278 (335)
Q Consensus 204 g~--~-~f~--~~~~y~~l~~~~~~~l~Q~~~ln~aL~~~~~~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~ 278 (335)
+. . ... ++..+.++..++.+.+ -..+.|+++++-+++.+ .++.-..|+++++.|.++++|... +. .+
T Consensus 242 ~~~~~~~~~~~~~~~~~i~y~~i~t~l-ay~lw~~~v~~~ga~~a-s~~~~L~PV~a~llg~l~LgE~lt--~~----~~ 313 (358)
T PLN00411 242 KNNPSVWIIHFDITLITIVTMAIITSV-YYVIHSWTVRHKGPLYL-AIFKPLSILIAVVMGAIFLNDSLY--LG----CL 313 (358)
T ss_pred cCCcccceeccchHHHHHHHHHHHHHH-HHHHHHHHHhccCchHH-HHHHhHHHHHHHHHHHHHhCCCCc--HH----HH
Confidence 11 1 111 1222233322333333 34468899998887664 445678899999999999999543 44 34
Q ss_pred HHHHHHHHHHhhhccccCCcCCC
Q 019850 279 CGFITVLSGTIILHATREHEQTT 301 (335)
Q Consensus 279 ~G~~l~i~Gv~lLs~~~~~~~~~ 301 (335)
+|.++++.|+.+..+.+.+|.++
T Consensus 314 iG~~LIl~Gv~l~~~~~~~~~~~ 336 (358)
T PLN00411 314 IGGILITLGFYAVMWGKANEEKD 336 (358)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhh
Confidence 78889999999988766666443
No 10
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.82 E-value=6.4e-07 Score=82.81 Aligned_cols=205 Identities=19% Similarity=0.205 Sum_probs=120.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchhhhhchhhHHHHHHHHHHHHHhccccccchhHHHHHHhhheeeEEEecCCCCCCCCH
Q 019850 55 WAGMVTMIVGEVANFVAYVYAPAVLVTPLGALSIIISAVLAHFMLKERLQKMGILGCITCIVGSVVIVIHAPQEHTPNSV 134 (335)
Q Consensus 55 ~~G~~l~~~g~~~~~~al~~~p~slv~Pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~l~~~~~~~~~~~~t~ 134 (335)
..|.+...+...+.+.++...|.+...++..+.-+++.+++..++|||++++++.|+.+.++|+.++...+ +.+..
T Consensus 51 ~~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~--~~~~~-- 126 (260)
T TIGR00950 51 LLGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDG--NLSIN-- 126 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCC--ccccc--
Confidence 55556677888899999999999999999999999999999999999999999999999999988765321 11111
Q ss_pred HHHHHHhcCchhhHHHHHHHHHHHHHhheecccCCCc-h--hHHHHHHHHhhhHHHHHHHHHHHHHHHHhhcCCCcchhh
Q 019850 135 QEIWALATQPDFLIYVAATVSVVLALVLHFEPRCGQT-N--ILVYLGICSLMGSLTVVSIKAIGIAIKLTLDGISQIAYP 211 (335)
Q Consensus 135 ~el~~~~~~~~fl~y~~~~~~v~~~l~~~~~~r~~~~-~--~~~~~~i~gllgg~svl~~K~v~~~l~~~~~g~~~f~~~ 211 (335)
..-..+..+..+ .........++..++ + ..........+++.. +..- . . ..+.+...++
T Consensus 127 ---------~~G~~~~l~a~~-~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~-l~~~--~--~---~~~~~~~~~~ 188 (260)
T TIGR00950 127 ---------PAGLLLGLGSGI-SFALGTVLYKRLVKKEGPELLQFTGWVLLLGALL-LLPF--A--W---FLGPNPQALS 188 (260)
T ss_pred ---------HHHHHHHHHHHH-HHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHH-HHHH--H--H---hcCCCCCcch
Confidence 001111111111 111111112221111 1 111111111222111 1100 0 0 1222212244
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHH
Q 019850 212 QTWF-FLTVAAVCVVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGT 288 (335)
Q Consensus 212 ~~y~-~l~~~~~~~l~Q~~~ln~aL~~~~~~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~l~i~Gv 288 (335)
..|. ++..++.+........++++++.++..+..+. ...|+.+.+.+.++++|. .++.+ ..|.++++.|+
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~-~~~pv~~~ll~~~~~~E~--~~~~~----~~G~~li~~g~ 259 (260)
T TIGR00950 189 LQWGALLYLGLIGTALAYFLWNKGLTLVDPSAASILA-LAEPLVALLLGLLILGET--LSLPQ----LIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHH-HHHHHHHHHHHHHHhCCC--CCHHH----HHHHHHHHHhc
Confidence 4443 33344444445555678899998887766665 588999999999999994 44443 45555666654
No 11
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.80 E-value=5.9e-07 Score=85.75 Aligned_cols=223 Identities=9% Similarity=0.121 Sum_probs=141.3
Q ss_pred chhHHHHHHH---HHHHHHHHHHHHhhcchhhhhchhh-HHHHHHHHHHHHHhccccccch----hHHHHHHhhheeeEE
Q 019850 51 EPLWWAGMVT---MIVGEVANFVAYVYAPAVLVTPLGA-LSIIISAVLAHFMLKERLQKMG----ILGCITCIVGSVVIV 122 (335)
Q Consensus 51 ~p~w~~G~~l---~~~g~~~~~~al~~~p~slv~Pl~~-~~lv~~~~la~~~l~e~~~~~~----~~g~~li~~G~~l~~ 122 (335)
...|..|++. ...|++..+.|.....+++-.|+.. ++++++.+.+.+++||+.++++ +.|+++++.|+.++.
T Consensus 56 ~~~~~~g~l~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~ 135 (290)
T TIGR00776 56 LSIFLVGLLSGAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTS 135 (290)
T ss_pred cHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEE
Confidence 4455667776 8899999999999999999999999 9999999999999999999999 899999999988775
Q ss_pred EecCCCCCCCCHHHHHHHhcCchhhHHHHHHHHHHHHHhheeccc---CCCchhHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 019850 123 IHAPQEHTPNSVQEIWALATQPDFLIYVAATVSVVLALVLHFEPR---CGQTNILVYLGICSLMGSLTVVSIKAIGIAIK 199 (335)
Q Consensus 123 ~~~~~~~~~~t~~el~~~~~~~~fl~y~~~~~~v~~~l~~~~~~r---~~~~~~~~~~~i~gllgg~svl~~K~v~~~l~ 199 (335)
...+++.+ .++.. ..+.-+.+..+..+.. -.+...+| ++.......-..+-++++..... .- . +
T Consensus 136 ~~~~~~~~---~~~~~---~~~~Gi~~~l~sg~~y--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~---~-~ 202 (290)
T TIGR00776 136 RSKDKSAG---IKSEF---NFKKGILLLLMSTIGY--LVYVVVAKAFGVDGLSVLLPQAIGMVIGGIIFNL-GH---I-L 202 (290)
T ss_pred eccccccc---ccccc---chhhHHHHHHHHHHHH--HHHHHHHHHcCCCcceehhHHHHHHHHHHHHHHH-HH---h-c
Confidence 44322111 01100 0122333333322211 11212222 11112111122222233332221 11 0 1
Q ss_pred HhhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHhhcccCCCChhHHHHHHH
Q 019850 200 LTLDGISQIAYPQTWFFLTVAAVCVVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEIC 279 (335)
Q Consensus 200 ~~~~g~~~f~~~~~y~~l~~~~~~~l~Q~~~ln~aL~~~~~~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~ 279 (335)
. ..+.....+..+..++.. ..+..+...++++.......+.+...+++++.+.|+.+++|.. ++.++....+
T Consensus 203 ---~--~~~~~~~~~~~~~~Gi~~-~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~--~~~~~~~~~i 274 (290)
T TIGR00776 203 ---A--KPLKKYAILLNILPGLMW-GIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKK--TKREMIAISV 274 (290)
T ss_pred ---c--cchHHHHHHHHHHHHHHH-HHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCC--CcceeehhHH
Confidence 1 112333334444455553 5566667777875555566777778889999999999999965 4689999999
Q ss_pred HHHHHHHHHhhhccc
Q 019850 280 GFITVLSGTIILHAT 294 (335)
Q Consensus 280 G~~l~i~Gv~lLs~~ 294 (335)
|.++++.|+++.+-+
T Consensus 275 G~~lIi~~~~l~~~~ 289 (290)
T TIGR00776 275 GIILIIIAANILGIG 289 (290)
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999988654
No 12
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.77 E-value=8e-07 Score=84.54 Aligned_cols=212 Identities=10% Similarity=0.097 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHHHHHHH-hhcchhhhhchhhHHHHHHHHHHHHHhccccccchhHHHHHHhhheeeEEEecCCCCCCCCH
Q 019850 56 AGMVTMIVGEVANFVAY-VYAPAVLVTPLGALSIIISAVLAHFMLKERLQKMGILGCITCIVGSVVIVIHAPQEHTPNSV 134 (335)
Q Consensus 56 ~G~~l~~~g~~~~~~al-~~~p~slv~Pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~l~~~~~~~~~~~~t~ 134 (335)
.|.+....+..+...+. ...|.+...-+..+.-+++.+++.+ +|||+++++|.|.++.++|+.++.. +++.+....
T Consensus 74 ~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~--~~~~~~~~~ 150 (292)
T PRK11272 74 IGLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNS--GGNLSGNPW 150 (292)
T ss_pred HHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhc--CcccccchH
Confidence 44444445566667777 8888888888999999999999975 7999999999999999999776532 211111101
Q ss_pred HHHHHHhcCchhhHHHHHHHHHHHHHhheecccCCCchhHHHHHHHHhhhHHHHHHHHHHHHHHHHhhcC-CCcchhhHH
Q 019850 135 QEIWALATQPDFLIYVAATVSVVLALVLHFEPRCGQTNILVYLGICSLMGSLTVVSIKAIGIAIKLTLDG-ISQIAYPQT 213 (335)
Q Consensus 135 ~el~~~~~~~~fl~y~~~~~~v~~~l~~~~~~r~~~~~~~~~~~i~gllgg~svl~~K~v~~~l~~~~~g-~~~f~~~~~ 213 (335)
.+ .+...... +-.......+|..+++........-.+++..... ... . .++ .....++..
T Consensus 151 G~-----------l~~l~a~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~---~~~~~~~~~~~~~ 211 (292)
T PRK11272 151 GA-----------ILILIASA-SWAFGSVWSSRLPLPVGMMAGAAEMLAAGVVLLI---ASL-L---SGERLTALPTLSG 211 (292)
T ss_pred HH-----------HHHHHHHH-HHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHH---HHH-H---cCCcccccCCHHH
Confidence 11 11111111 1111111233333222111111111222111110 110 1 111 112223444
Q ss_pred HH-HHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHHhhhc
Q 019850 214 WF-FLTVAAVCVVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGTIILH 292 (335)
Q Consensus 214 y~-~l~~~~~~~l~Q~~~ln~aL~~~~~~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~l~i~Gv~lLs 292 (335)
|. ++..++.+......+.+.++++.+++.+... ...+|+.+++.|.++++|. .++. ...|.++++.|+++++
T Consensus 212 ~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~-~~l~Pi~a~i~~~~~l~E~--~t~~----~iiG~~lIi~gv~~~~ 284 (292)
T PRK11272 212 FLALGYLAVFGSIIAISAYMYLLRNVRPALATSY-AYVNPVVAVLLGTGLGGET--LSPI----EWLALGVIVFAVVLVT 284 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHH-HHHHHHHHHHHHHHHcCCC--CcHH----HHHHHHHHHHHHHHHH
Confidence 43 3333444555666788899998887665554 6789999999999999995 3344 4577888999999987
Q ss_pred cccC
Q 019850 293 ATRE 296 (335)
Q Consensus 293 ~~~~ 296 (335)
+++.
T Consensus 285 ~~~~ 288 (292)
T PRK11272 285 LGKY 288 (292)
T ss_pred HHHh
Confidence 6543
No 13
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.77 E-value=4.4e-06 Score=79.62 Aligned_cols=263 Identities=13% Similarity=0.091 Sum_probs=131.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhccC---CCccCC--------ccccccc---chhHHHHHHHHHHHHHHHHHHHhh
Q 019850 9 GLILAVASSAFIGSSFILKKKGLKRAGAS---GTRAGV--------GGYTYLL---EPLWWAGMVTMIVGEVANFVAYVY 74 (335)
Q Consensus 9 GvllAl~sa~~~a~g~vlqk~~~~~~~~~---~~~~~~--------~~~~~~~---~p~w~~G~~l~~~g~~~~~~al~~ 74 (335)
+.++++.+.++-+..+...|.+..+.+.- ..|-.. ..++-.| ++....|.+.+.....+.+.++.+
T Consensus 5 ~~l~~l~a~~~Wg~~~~~~k~~~~~~~P~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~ 84 (295)
T PRK11689 5 ATLIGLIAILLWSTMVGLIRGVSESLGPVGGAAMIYSVSGLLLLLTVGFPRLRQFPKRYLLAGGLLFVSYEICLALSLGY 84 (295)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34566777777777777777765544321 001000 0000111 112233333333444455556544
Q ss_pred c----chhhhhchhhHHHHHHHHHHHHHhccccccchhHHHHHHhhheeeEEEecCCCCCCCCHHHHHHHh-cCchhhHH
Q 019850 75 A----PAVLVTPLGALSIIISAVLAHFMLKERLQKMGILGCITCIVGSVVIVIHAPQEHTPNSVQEIWALA-TQPDFLIY 149 (335)
Q Consensus 75 ~----p~slv~Pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~l~~~~~~~~~~~~t~~el~~~~-~~~~fl~y 149 (335)
+ |.+...-+..+.-+++.+++..++|||+++++|.|+++...|++++...++ +. +.++..... .++.-..+
T Consensus 85 ~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~--~~--~~~~~~~~~~~~~~G~~~ 160 (295)
T PRK11689 85 ANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDN--GL--SLAELINNIASNPLSYGL 160 (295)
T ss_pred hhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCc--cc--hhhhhhhccccChHHHHH
Confidence 3 445556677788899999999999999999999999999999887753221 10 111100000 01101111
Q ss_pred HHHHHHHHHHHhheecccCCCc-hhHHHHHHHHhhhHHHHHHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHH
Q 019850 150 VAATVSVVLALVLHFEPRCGQT-NILVYLGICSLMGSLTVVSIKAIGIAIKLTLDGISQIAYPQTWFFLTVAAVCVVTQL 228 (335)
Q Consensus 150 ~~~~~~v~~~l~~~~~~r~~~~-~~~~~~~i~gllgg~svl~~K~v~~~l~~~~~g~~~f~~~~~y~~l~~~~~~~l~Q~ 228 (335)
.... .++-.......+|..++ +...+.. ..++.. +. ...... +....-.++..|..+.....+...-.
T Consensus 161 ~l~a-a~~~A~~~v~~k~~~~~~~~~~~~~---~~~~~~-l~---~~~~~~---~~~~~~~~~~~~~~l~~~~~~t~~~~ 229 (295)
T PRK11689 161 AFIG-AFIWAAYCNVTRKYARGKNGITLFF---ILTALA-LW---IKYFLS---PQPAMVFSLPAIIKLLLAAAAMGFGY 229 (295)
T ss_pred HHHH-HHHHHHHHHHHhhccCCCCchhHHH---HHHHHH-HH---HHHHHh---cCccccCCHHHHHHHHHHHHHHHHHH
Confidence 1111 11111111122332221 1111111 111111 10 000110 11111123333333222223344455
Q ss_pred HHHHHhhccccccccchhHHHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHHhhhcc
Q 019850 229 NYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGTIILHA 293 (335)
Q Consensus 229 ~~ln~aL~~~~~~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~l~i~Gv~lLs~ 293 (335)
.+.|+++|+.+++.+.+. .-.+|+++++.|.++++|.. ++. ..+|.++++.|+++...
T Consensus 230 ~l~~~al~~~~a~~~s~~-~~l~Pv~a~i~~~~~lgE~~--~~~----~~iG~~lI~~gv~~~~~ 287 (295)
T PRK11689 230 AAWNVGILHGNMTLLATA-SYFTPVLSAALAALLLSTPL--SFS----FWQGVAMVTAGSLLCWL 287 (295)
T ss_pred HHHHHHHHccCHHHHHHH-HHhHHHHHHHHHHHHhCCCC--cHH----HHHHHHHHHHhHHHHhh
Confidence 667999999988765544 57889999999999999954 343 44677778888766643
No 14
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.76 E-value=3.5e-06 Score=80.24 Aligned_cols=264 Identities=14% Similarity=0.065 Sum_probs=143.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCC---Ccc--C--------Ccccccccchh----HHHHHHHHHHHHHH
Q 019850 5 ENSKGLILAVASSAFIGSSFILKKKGLKRAGASG---TRA--G--------VGGYTYLLEPL----WWAGMVTMIVGEVA 67 (335)
Q Consensus 5 ~~~iGvllAl~sa~~~a~g~vlqk~~~~~~~~~~---~~~--~--------~~~~~~~~~p~----w~~G~~l~~~g~~~ 67 (335)
+...|+.+.+++.++.+.+.+.-|.+..+.+... .|- + ...+...+++. ++.|.. +.....+
T Consensus 9 ~~~~~~~~~~la~~~~~~~~~~~K~~~~~~~~~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~ 87 (293)
T PRK10532 9 PVWLPILLLLIAMASIQSGASLAKSLFPLVGAPGVTALRLALGTLILIAIFKPWRLRFAKEQRLPLLFYGVS-LGGMNYL 87 (293)
T ss_pred ccchHHHHHHHHHHHHHhhHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhHHhccCCHHHHHHHHHHHHH-HHHHHHH
Confidence 4467889999999999999999998765433210 010 0 00000112222 245543 4566677
Q ss_pred HHHHHhhcchhhhhchhhHHHHHHHHHHHHHhccccccchhHHHHHHhhheeeEEEecCCCCCCCCHHHHHHHhcCchhh
Q 019850 68 NFVAYVYAPAVLVTPLGALSIIISAVLAHFMLKERLQKMGILGCITCIVGSVVIVIHAPQEHTPNSVQEIWALATQPDFL 147 (335)
Q Consensus 68 ~~~al~~~p~slv~Pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~l~~~~~~~~~~~~t~~el~~~~~~~~fl 147 (335)
.+.++...|.+...-+....-++..++++ ||.+ ++.++.+.+.|+.++...+.+.+. .+ +.-.
T Consensus 88 ~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~--~~~~~~i~~~Gv~li~~~~~~~~~-~~----------~~G~ 150 (293)
T PRK10532 88 FYLSIQTVPLGIAVALEFTGPLAVALFSS----RRPV--DFVWVVLAVLGLWFLLPLGQDVSH-VD----------LTGA 150 (293)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHHhc----CChH--HHHHHHHHHHHHheeeecCCCccc-CC----------hHHH
Confidence 88889999999877677676777766653 5544 455666778887766532221111 11 1011
Q ss_pred HHHHHHHHHHHHHhhe-ecccCCCchhHHHHHHHHhhhHHHHHHHHHHHHHHHHhhcCCCcchhhHHHH-HHHHHHHHHH
Q 019850 148 IYVAATVSVVLALVLH-FEPRCGQTNILVYLGICSLMGSLTVVSIKAIGIAIKLTLDGISQIAYPQTWF-FLTVAAVCVV 225 (335)
Q Consensus 148 ~y~~~~~~v~~~l~~~-~~~r~~~~~~~~~~~i~gllgg~svl~~K~v~~~l~~~~~g~~~f~~~~~y~-~l~~~~~~~l 225 (335)
.+.... .++...+. ..++..++..........++++.- +.. ... ..+.....++..|. ++..+++++.
T Consensus 151 ll~l~a--a~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~-l~~--~~~-----~~~~~~~~~~~~~~~~l~lgv~~t~ 220 (293)
T PRK10532 151 ALALGA--GACWAIYILSGQRAGAEHGPATVAIGSLIAALI-FVP--IGA-----LQAGEALWHWSILPLGLAVAILSTA 220 (293)
T ss_pred HHHHHH--HHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH-HHH--HHH-----HccCcccCCHHHHHHHHHHHHHHHH
Confidence 111111 11111111 122221111111112222232211 110 111 11112223444443 2455566777
Q ss_pred HHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHHhhhccccCCcCCCCC
Q 019850 226 TQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGTIILHATREHEQTTAP 303 (335)
Q Consensus 226 ~Q~~~ln~aL~~~~~~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~l~i~Gv~lLs~~~~~~~~~~~ 303 (335)
.+....|.++++.+++.+.+. ...+|+++++.|.+++||. .++. ..+|.+++++|++..++.+.+|++-|.
T Consensus 221 ~~~~l~~~~~~~~~a~~as~~-~~l~Pv~a~l~~~l~lgE~--~~~~----~~iG~~lIl~~~~~~~~~~~~~~~~~~ 291 (293)
T PRK10532 221 LPYSLEMIALTRLPTRTFGTL-MSMEPALAAVSGMIFLGET--LTLI----QWLALGAIIAASMGSTLTIRREPKIKE 291 (293)
T ss_pred HHHHHHHHHHHhcChhHHHHH-HHhHHHHHHHHHHHHhCCC--CcHH----HHHHHHHHHHHHHHHHhcCCCCCCCCC
Confidence 788889999999988776555 5789999999999999995 3344 446677777888887777666555443
No 15
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.72 E-value=1.3e-06 Score=83.30 Aligned_cols=225 Identities=15% Similarity=0.144 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcchhhhhchhhHHHHHHHHHHHHHhccccccchhHHHHHHhhheeeEEEecCCCCCCCC
Q 019850 54 WWAGMVTMIVGEVANFVAYVYAPAVLVTPLGALSIIISAVLAHFMLKERLQKMGILGCITCIVGSVVIVIHAPQEHTPNS 133 (335)
Q Consensus 54 w~~G~~l~~~g~~~~~~al~~~p~slv~Pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~l~~~~~~~~~~~~t 133 (335)
...|+. ..+...++..++.+.+.+..+-+.+++.+++++++++++|||++++++.|.++++.|+.+.. ..+.+...
T Consensus 69 ~~~g~~-~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~---~~~~~~~~ 144 (302)
T TIGR00817 69 LPVAIV-HTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALAS---DTELSFNW 144 (302)
T ss_pred HHHHHH-HHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhc---CCcccccH
Confidence 344555 46777899999999999999999999999999999999999999999999999999986542 22211111
Q ss_pred HHHHHHHhcCchhhHHHHHHHHHHHHHhheeccc------CCCchhHHHHHHHHhhh-HHHHHHHHHHHHHHHHhhcCCC
Q 019850 134 VQEIWALATQPDFLIYVAATVSVVLALVLHFEPR------CGQTNILVYLGICSLMG-SLTVVSIKAIGIAIKLTLDGIS 206 (335)
Q Consensus 134 ~~el~~~~~~~~fl~y~~~~~~v~~~l~~~~~~r------~~~~~~~~~~~i~gllg-g~svl~~K~v~~~l~~~~~g~~ 206 (335)
..++ +..+. .++-.+-....+| .+..+...|....+.+. ..-............+..+...
T Consensus 145 ~G~~-----------~~l~a-~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~ 212 (302)
T TIGR00817 145 AGFL-----------SAMIS-NITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAIS 212 (302)
T ss_pred HHHH-----------HHHHH-HHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhc
Confidence 1111 11111 1111110111222 22223333333222111 0111100000000000000000
Q ss_pred cchhhHHHH-HHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHH
Q 019850 207 QIAYPQTWF-FLTVAAVCVVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVL 285 (335)
Q Consensus 207 ~f~~~~~y~-~l~~~~~~~l~Q~~~ln~aL~~~~~~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~l~i 285 (335)
.......|. .+.....+........+.++++-+++...-. ....++++++.|.++++|.. ++. ..+|.++++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~-~~l~pv~~~~~~~~~lge~l--t~~----~~~G~~lil 285 (302)
T TIGR00817 213 GVNVTKIYTVSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVG-NCMKRVVVIVVSILFFGTKI--SPQ----QVFGTGIAI 285 (302)
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHH-hhhhhhheeeeehhhcCCCC--chh----HHHHHHHHH
Confidence 001111232 2222222222222233357887776654444 67889999999999999953 444 346777899
Q ss_pred HHHhhhccccCCcCCC
Q 019850 286 SGTIILHATREHEQTT 301 (335)
Q Consensus 286 ~Gv~lLs~~~~~~~~~ 301 (335)
.|+++-++.+.++.++
T Consensus 286 ~Gv~l~~~~k~~~~~~ 301 (302)
T TIGR00817 286 AGVFLYSRVKAQKPKP 301 (302)
T ss_pred HHHHHHHHHhccCcCC
Confidence 9999988776544433
No 16
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=98.60 E-value=8.3e-08 Score=79.29 Aligned_cols=103 Identities=17% Similarity=0.213 Sum_probs=82.9
Q ss_pred HHHHHHHHHHhhhhhhccC-CC-ccCCcccccccchhHHHHHHHHHHHHHHHHHHHhhcchhhhhchh-hHHHHHHHHHH
Q 019850 19 FIGSSFILKKKGLKRAGAS-GT-RAGVGGYTYLLEPLWWAGMVTMIVGEVANFVAYVYAPAVLVTPLG-ALSIIISAVLA 95 (335)
Q Consensus 19 ~~a~g~vlqk~~~~~~~~~-~~-~~~~~~~~~~~~p~w~~G~~l~~~g~~~~~~al~~~p~slv~Pl~-~~~lv~~~~la 95 (335)
+-+...-+-|||.+..++. +. +.-.+.+.+++||.+++++++...|++..+..++-+|+|+..|+. +++++++++.+
T Consensus 7 ~WG~Tnpfik~g~~~~~~~~~~~~~~~~~~~Ll~n~~y~ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g 86 (113)
T PF10639_consen 7 LWGCTNPFIKRGSSGLEKVKASLQLLQEIKFLLLNPKYIIPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTG 86 (113)
T ss_pred HhcCchHHHHHHHhhcCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHH
Confidence 3345556678876554432 11 111234678999999999999999999999999999999999996 99999999999
Q ss_pred HHHhccccccchhHHHHHHhhheeeE
Q 019850 96 HFMLKERLQKMGILGCITCIVGSVVI 121 (335)
Q Consensus 96 ~~~l~e~~~~~~~~g~~li~~G~~l~ 121 (335)
.++.+|..+++.+.|+.+++.|+.+.
T Consensus 87 ~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 87 WLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred HHhcCcccchhHHHHHHHHHcCeeee
Confidence 87777777888899999999998765
No 17
>COG2510 Predicted membrane protein [Function unknown]
Probab=98.60 E-value=3.8e-07 Score=76.48 Aligned_cols=113 Identities=23% Similarity=0.320 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhccC---CCcc--------------CC-cccccccchhHHH---HHHHHHHHHHHH
Q 019850 10 LILAVASSAFIGSSFILKKKGLKRAGAS---GTRA--------------GV-GGYTYLLEPLWWA---GMVTMIVGEVAN 68 (335)
Q Consensus 10 vllAl~sa~~~a~g~vlqk~~~~~~~~~---~~~~--------------~~-~~~~~~~~p~w~~---G~~l~~~g~~~~ 68 (335)
.+.|+.||++.+...++-|-|.+..+.. -.|. +. +...-...+.|.. +-+.-+++-.+-
T Consensus 5 ~~~ALLsA~fa~L~~iF~KIGl~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glswl~Y 84 (140)
T COG2510 5 IIYALLSALFAGLTPIFAKIGLEGVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSWLLY 84 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHHHHHH
Confidence 5789999999999999999997744321 0000 00 0000112222321 113445677788
Q ss_pred HHHHhhcchhhhhchhhHHHHHHHHHHHHHhccccccchhHHHHHHhhheeeEE
Q 019850 69 FVAYVYAPAVLVTPLGALSIIISAVLAHFMLKERLQKMGILGCITCIVGSVVIV 122 (335)
Q Consensus 69 ~~al~~~p~slv~Pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~l~~ 122 (335)
+.|+..++.|.|.|+-.++.++..++|..++|||+|..+|+|+.+|+.|++++.
T Consensus 85 f~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 85 FRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 999999999999999999999999999999999999999999999999988775
No 18
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.54 E-value=2.5e-05 Score=72.29 Aligned_cols=212 Identities=16% Similarity=0.225 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchhhhhchhhHHHHHHHHHHH-HHhccccccchhHHHHHHhhheeeEEEecCCCCCCCC
Q 019850 55 WAGMVTMIVGEVANFVAYVYAPAVLVTPLGALSIIISAVLAH-FMLKERLQKMGILGCITCIVGSVVIVIHAPQEHTPNS 133 (335)
Q Consensus 55 ~~G~~l~~~g~~~~~~al~~~p~slv~Pl~~~~lv~~~~la~-~~l~e~~~~~~~~g~~li~~G~~l~~~~~~~~~~~~t 133 (335)
..|......+..+.+.++...|.+..+++.....+++.+++. +++|||+++++|.|..+...|+.++...+..+...
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~-- 151 (292)
T COG0697 74 LLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGIL-- 151 (292)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchhH--
Confidence 344455677888999999999999999999999999999997 66799999999999999999987775433222211
Q ss_pred HHHHHHHhcCchhhHHHHHHHHHHHHHhheecccCCCchhHHHHH-HHHhhhHHHHHHHHHHHHHHHHhhcCCCcchhhH
Q 019850 134 VQEIWALATQPDFLIYVAATVSVVLALVLHFEPRCGQTNILVYLG-ICSLMGSLTVVSIKAIGIAIKLTLDGISQIAYPQ 212 (335)
Q Consensus 134 ~~el~~~~~~~~fl~y~~~~~~v~~~l~~~~~~r~~~~~~~~~~~-i~gllgg~svl~~K~v~~~l~~~~~g~~~f~~~~ 212 (335)
.. .-..+...... ...+.....++..+........ .... + ..+ .... ......+....+.
T Consensus 152 --~~-------~g~~~~l~a~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~----~~~~--~~~~~~~~~~~~~ 212 (292)
T COG0697 152 --SL-------LGLLLALAAAL-LWALYTALVKRLSRLGPVTLALLLQLL-L--ALL----LLLL--FFLSGFGAPILSR 212 (292)
T ss_pred --HH-------HHHHHHHHHHH-HHHHHHHHHHHhcCCChHHHHHHHHHH-H--HHH----HHHH--HHhccccccCCHH
Confidence 00 01111111111 1111111122211111111111 1111 0 000 0000 0011111122222
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHHhhh
Q 019850 213 TWF-FLTVAAVCVVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGTIIL 291 (335)
Q Consensus 213 ~y~-~l~~~~~~~l~Q~~~ln~aL~~~~~~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~l~i~Gv~lL 291 (335)
.|. +...+..+........+.++++.++....|.. ...++.+++.+.++++|.-+ ..++ .|..+++.|+++.
T Consensus 213 ~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~l~~~e~~~--~~~~----~G~~li~~g~~l~ 285 (292)
T COG0697 213 AWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLS-LLEPVFAALLGVLLLGEPLS--PAQL----LGAALVVLGVLLA 285 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHH-HHHHHHHHHHHHHHhCCCCc--HHHH----HHHHHHHHHHHHH
Confidence 222 23333333435566778899988888777765 77888888899999999543 4433 4557888888888
Q ss_pred ccc
Q 019850 292 HAT 294 (335)
Q Consensus 292 s~~ 294 (335)
.++
T Consensus 286 ~~~ 288 (292)
T COG0697 286 SLR 288 (292)
T ss_pred hcc
Confidence 765
No 19
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.44 E-value=8e-07 Score=72.98 Aligned_cols=66 Identities=32% Similarity=0.483 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHhhcchhhhhchhhHHHHHHHHHHHHHhccccccchhHHHHHHhhheeeEEE
Q 019850 57 GMVTMIVGEVANFVAYVYAPAVLVTPLGALSIIISAVLAHFMLKERLQKMGILGCITCIVGSVVIVI 123 (335)
Q Consensus 57 G~~l~~~g~~~~~~al~~~p~slv~Pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~l~~~ 123 (335)
|.+....+..+...|+.+.| +.+.|+.+++.+++.+++..++|||+++++|.|++++.+|++++..
T Consensus 41 g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~ 106 (113)
T PF13536_consen 41 GLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAW 106 (113)
T ss_pred HHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhh
Confidence 44445578899999999999 6899999999999999999999999999999999999999887754
No 20
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=98.27 E-value=5.5e-05 Score=71.58 Aligned_cols=214 Identities=9% Similarity=0.191 Sum_probs=127.5
Q ss_pred hhHHHHHHH---HHHHHHHHHHHHhhcchhhhhchh-hHHHHHHHHHHHHHhccccccchhH----HHHHHhhheeeEEE
Q 019850 52 PLWWAGMVT---MIVGEVANFVAYVYAPAVLVTPLG-ALSIIISAVLAHFMLKERLQKMGIL----GCITCIVGSVVIVI 123 (335)
Q Consensus 52 p~w~~G~~l---~~~g~~~~~~al~~~p~slv~Pl~-~~~lv~~~~la~~~l~e~~~~~~~~----g~~li~~G~~l~~~ 123 (335)
..|+.+++. -.+|.++|+.++.....|.-.|+. +.+++.|.+.+.+++||--+..+++ +++++++|+.+...
T Consensus 43 ~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~ 122 (269)
T PF06800_consen 43 TSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSY 122 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcc
Confidence 456666654 468999999999999999999998 8999999999999999998888865 88899999887776
Q ss_pred ecCCCCCCCCHHHHHHHhcCchhhHHHHHHHHHHHHHhheecccCCCchhHH---HHHHHHhhhHHHHHHHHHHHHHHHH
Q 019850 124 HAPQEHTPNSVQEIWALATQPDFLIYVAATVSVVLALVLHFEPRCGQTNILV---YLGICSLMGSLTVVSIKAIGIAIKL 200 (335)
Q Consensus 124 ~~~~~~~~~t~~el~~~~~~~~fl~y~~~~~~v~~~l~~~~~~r~~~~~~~~---~~~i~gllgg~svl~~K~v~~~l~~ 200 (335)
..+++++..+..+..+ -+....+ -.+....|...||..+-+..- ==+++=++++.--..
T Consensus 123 ~~~~~~~~~~~~~~~k------gi~~Ll~--stigy~~Y~~~~~~~~~~~~~~~lPqaiGm~i~a~i~~~---------- 184 (269)
T PF06800_consen 123 QDKKSDKSSSKSNMKK------GILALLI--STIGYWIYSVIPKAFHVSGWSAFLPQAIGMLIGAFIFNL---------- 184 (269)
T ss_pred ccccccccccccchhh------HHHHHHH--HHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHHHHhh----------
Confidence 5555554333333322 1111111 122223344455553322111 011111222111110
Q ss_pred hhcCCCcchhhHHHHHHHHHHHHHHHH-HHHHHHhhccccccccchhHHHHHHHHHHHHHHHhhcccCCCChhHHHHHHH
Q 019850 201 TLDGISQIAYPQTWFFLTVAAVCVVTQ-LNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEIC 279 (335)
Q Consensus 201 ~~~g~~~f~~~~~y~~l~~~~~~~l~Q-~~~ln~aL~~~~~~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~ 279 (335)
+. .+.+.+..+|.=+..++.-.+.- .+++.. +.--.+...|.-|.. .+.+.++|..+++|.. +..++....+
T Consensus 185 -~~-~~~~~~k~~~~nil~G~~w~ignl~~~is~--~~~G~a~af~lSQ~~-vvIStlgGI~il~E~K--t~ke~~~~~~ 257 (269)
T PF06800_consen 185 -FS-KKPFFEKKSWKNILTGLIWGIGNLFYLISA--QKNGVATAFTLSQLG-VVISTLGGIFILKEKK--TKKEMIYTLI 257 (269)
T ss_pred -cc-cccccccchHHhhHHHHHHHHHHHHHHHhH--HhccchhhhhHHhHH-HHHHHhhhheEEEecC--chhhHHHHHH
Confidence 01 12222233333233332211111 112222 122234667777777 6678889999999976 3688999999
Q ss_pred HHHHHHHHHhh
Q 019850 280 GFITVLSGTII 290 (335)
Q Consensus 280 G~~l~i~Gv~l 290 (335)
|+++++.|.++
T Consensus 258 G~~Liv~G~il 268 (269)
T PF06800_consen 258 GLILIVIGAIL 268 (269)
T ss_pred HHHHHHHhhhc
Confidence 99999998875
No 21
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.23 E-value=0.00016 Score=70.98 Aligned_cols=69 Identities=14% Similarity=0.201 Sum_probs=58.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcchhhhhchhhHHHHHHHHHHHHHhccccccchhHHHHHHhhheeeEE
Q 019850 53 LWWAGMVTMIVGEVANFVAYVYAPAVLVTPLGALSIIISAVLAHFMLKERLQKMGILGCITCIVGSVVIV 122 (335)
Q Consensus 53 ~w~~G~~l~~~g~~~~~~al~~~p~slv~Pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~l~~ 122 (335)
....|+.-. .+..+...++...+.+..+=+-+++-+++++++++++|||++++++.+++++++|+.+..
T Consensus 117 llp~gl~~~-~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~ 185 (350)
T PTZ00343 117 FLPQGLCHL-FVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALAS 185 (350)
T ss_pred HHHHHHHHH-HHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHhee
Confidence 334444333 235556699999999999999999999999999999999999999999999999988765
No 22
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=98.17 E-value=0.0017 Score=62.09 Aligned_cols=224 Identities=14% Similarity=0.193 Sum_probs=128.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcchhhhhchhhHHHHHHHHHHHHHhccccccchhHHHHHHhhheeeEEEecCCCCCC
Q 019850 52 PLWWAGMVTMIVGEVANFVAYVYAPAVLVTPLGALSIIISAVLAHFMLKERLQKMGILGCITCIVGSVVIVIHAPQEHTP 131 (335)
Q Consensus 52 p~w~~G~~l~~~g~~~~~~al~~~p~slv~Pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~l~~~~~~~~~~~ 131 (335)
+++..+ +++.++..++-.||.+.|.+.-+=+-+..++++++++..++|+|.+++++.+++++++|+++......++++.
T Consensus 66 ~~~~~~-~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~ 144 (303)
T PF08449_consen 66 KYAILS-FLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSS 144 (303)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccc
Confidence 334444 5566777889999999999999999999999999999999999999999999999999999887766544443
Q ss_pred CCHHHHHHHhcCchhhHHHHHHHHHHH-HHhh----eecccCCCc--hhHHHHHHHHhh-hHHHHHHHHHHHHHHHHhhc
Q 019850 132 NSVQEIWALATQPDFLIYVAATVSVVL-ALVL----HFEPRCGQT--NILVYLGICSLM-GSLTVVSIKAIGIAIKLTLD 203 (335)
Q Consensus 132 ~t~~el~~~~~~~~fl~y~~~~~~v~~-~l~~----~~~~r~~~~--~~~~~~~i~gll-gg~svl~~K~v~~~l~~~~~ 203 (335)
.+.++. ++.. .++.+....++ .... +..++++.. ..+.|-..-++. ........+ -.+ .....
T Consensus 145 ~~~~~~-----~~~~-G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~-~~~-~~~~~- 215 (303)
T PF08449_consen 145 SNSSSF-----SSAL-GIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLP-TGE-FRSAI- 215 (303)
T ss_pred cccccc-----cchh-HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHH-hhH-hhHHH-
Confidence 222110 0000 11111111111 0000 111233222 233443333322 211211111 111 11100
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHH
Q 019850 204 GISQIAYPQTWFFLTVAAVCVVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFIT 283 (335)
Q Consensus 204 g~~~f~~~~~y~~l~~~~~~~l~Q~~~ln~aL~~~~~~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~l 283 (335)
.-...||..+..+.....+....+.+.+.-.+++++....-+ ...--..+++.+.++|++ +.++.+|. |.++
T Consensus 216 -~f~~~~p~~~~~l~~~s~~~~~g~~~i~~~~~~~~al~~t~v-~t~Rk~~sillS~~~f~~--~~~~~~~~----G~~l 287 (303)
T PF08449_consen 216 -RFISAHPSVLLYLLLFSLTGALGQFFIFYLIKKFSALTTTIV-TTLRKFLSILLSVIIFGH--PLSPLQWI----GIVL 287 (303)
T ss_pred -HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhH-HHHHHHHHHHHHHHhcCC--cCChHHHH----HHHH
Confidence 112467776665555555433333455666787777664444 445567788889999987 56667665 4445
Q ss_pred HHHHHhhhcc
Q 019850 284 VLSGTIILHA 293 (335)
Q Consensus 284 ~i~Gv~lLs~ 293 (335)
++.|+.+=+.
T Consensus 288 v~~g~~~~~~ 297 (303)
T PF08449_consen 288 VFAGIFLYSY 297 (303)
T ss_pred hHHHHHHHHH
Confidence 6666665443
No 23
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=98.15 E-value=2.5e-05 Score=65.42 Aligned_cols=74 Identities=18% Similarity=0.164 Sum_probs=65.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcchhhhhchh-hHHHHHHHHHHHHHhccccccchhHHHHHHhhheeeEEEecC
Q 019850 53 LWWAGMVTMIVGEVANFVAYVYAPAVLVTPLG-ALSIIISAVLAHFMLKERLQKMGILGCITCIVGSVVIVIHAP 126 (335)
Q Consensus 53 ~w~~G~~l~~~g~~~~~~al~~~p~slv~Pl~-~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~l~~~~~~ 126 (335)
.|+..++++++++.+...++...|+++.+|+- +++.+.+.+.+.+++||++|..+++|+.+++.|++.+-..++
T Consensus 32 ~~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~~ 106 (120)
T PRK10452 32 GFILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGTR 106 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCCC
Confidence 35667777889999999999999999999995 799999999999999999999999999999999887744443
No 24
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=98.04 E-value=5.1e-05 Score=62.60 Aligned_cols=96 Identities=15% Similarity=0.122 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccCCCccCCcccccccchhHH-HHHHHHHHHHHHHHHHHhhcchhhhhch-hhHHHHHH
Q 019850 14 VASSAFIGSSFILKKKGLKRAGASGTRAGVGGYTYLLEPLWW-AGMVTMIVGEVANFVAYVYAPAVLVTPL-GALSIIIS 91 (335)
Q Consensus 14 l~sa~~~a~g~vlqk~~~~~~~~~~~~~~~~~~~~~~~p~w~-~G~~l~~~g~~~~~~al~~~p~slv~Pl-~~~~lv~~ 91 (335)
+++.++-..|....|++. . +++|.|. ..++++++++.+...++...|+++.+|+ .+++.+.+
T Consensus 8 ~~a~~~Ev~~~~~lK~s~-------------g---f~~~~~~i~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~ 71 (110)
T PRK09541 8 GGAILAEVIGTTLMKFSE-------------G---FTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLI 71 (110)
T ss_pred HHHHHHHHHHHHHHHHhc-------------C---CCchhHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHH
Confidence 344555556666666651 0 2345554 4456688888889999999999999999 67999999
Q ss_pred HHHHHHHhccccccchhHHHHHHhhheeeEEEec
Q 019850 92 AVLAHFMLKERLQKMGILGCITCIVGSVVIVIHA 125 (335)
Q Consensus 92 ~~la~~~l~e~~~~~~~~g~~li~~G~~l~~~~~ 125 (335)
.+.+.+++||+++..+++|+.+++.|++++-..+
T Consensus 72 ~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~ 105 (110)
T PRK09541 72 SLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS 105 (110)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999988874433
No 25
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.02 E-value=2.4e-05 Score=74.45 Aligned_cols=124 Identities=15% Similarity=0.100 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCC---c----------cCCcccccccch-----hHHHHHHHHHHHHHHH
Q 019850 7 SKGLILAVASSAFIGSSFILKKKGLKRAGASGT---R----------AGVGGYTYLLEP-----LWWAGMVTMIVGEVAN 68 (335)
Q Consensus 7 ~iGvllAl~sa~~~a~g~vlqk~~~~~~~~~~~---~----------~~~~~~~~~~~p-----~w~~G~~l~~~g~~~~ 68 (335)
.+|.++++.++++.+...++.|+-.++.+.... . ..........++ .++.|++..++++.++
T Consensus 147 ~~G~ll~l~aa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lgv~~t~~~~~l~ 226 (293)
T PRK10532 147 LTGAALALGAGACWAIYILSGQRAGAEHGPATVAIGSLIAALIFVPIGALQAGEALWHWSILPLGLAVAILSTALPYSLE 226 (293)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHccCcccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 569999999999999999988775433221000 0 000000011121 2466777778889999
Q ss_pred HHHHhhcchhhhhchhhHHHHHHHHHHHHHhccccccchhHHHHHHhhheeeEEEecCCCCC
Q 019850 69 FVAYVYAPAVLVTPLGALSIIISAVLAHFMLKERLQKMGILGCITCIVGSVVIVIHAPQEHT 130 (335)
Q Consensus 69 ~~al~~~p~slv~Pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~l~~~~~~~~~~ 130 (335)
..++...|.+.+.++..++.+++.+++.+++||+++..+++|.++++.|+.......++|++
T Consensus 227 ~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~~~~ 288 (293)
T PRK10532 227 MIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRREPK 288 (293)
T ss_pred HHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 99999999999999999999999999999999999999999999999997766544455443
No 26
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=97.97 E-value=0.00039 Score=64.55 Aligned_cols=62 Identities=15% Similarity=0.159 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHhhcchhhhhchhhHHHHHHHHHHHHHhccccccchhHHHHHHhhheeeEE
Q 019850 61 MIVGEVANFVAYVYAPAVLVTPLGALSIIISAVLAHFMLKERLQKMGILGCITCIVGSVVIV 122 (335)
Q Consensus 61 ~~~g~~~~~~al~~~p~slv~Pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~l~~ 122 (335)
...+..+.+.++...|.+...-+....-+++++++++++|||+++++|.|+++..+|++++.
T Consensus 80 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~ 141 (256)
T TIGR00688 80 IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNI 141 (256)
T ss_pred HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 55677889999999999999999999999999999999999999999999999999987654
No 27
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=97.86 E-value=0.00011 Score=58.56 Aligned_cols=85 Identities=15% Similarity=-0.016 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccCCCccCCcccccccchhHHHHHH-HHHHHHHHHHHHHhhcchhhhhchh-hHHHHHH
Q 019850 14 VASSAFIGSSFILKKKGLKRAGASGTRAGVGGYTYLLEPLWWAGMV-TMIVGEVANFVAYVYAPAVLVTPLG-ALSIIIS 91 (335)
Q Consensus 14 l~sa~~~a~g~vlqk~~~~~~~~~~~~~~~~~~~~~~~p~w~~G~~-l~~~g~~~~~~al~~~p~slv~Pl~-~~~lv~~ 91 (335)
+.+.++-..++...|++. -.+++.|..+.+ ++++++.+...|+...|.++..|+- +++.+..
T Consensus 7 ~~a~~~ev~~~~~lK~s~----------------g~~~~~~~~~~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~ 70 (93)
T PF00893_consen 7 LLAILFEVVGTIALKASH----------------GFTQLIPTILAVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGV 70 (93)
T ss_dssp HHHHHHHHHHHHH------------------------------HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----------------hhcchhhHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 344555566777777631 133445555554 5888989999999999999999985 5999999
Q ss_pred HHHHHHHhccccccchhHHHHHH
Q 019850 92 AVLAHFMLKERLQKMGILGCITC 114 (335)
Q Consensus 92 ~~la~~~l~e~~~~~~~~g~~li 114 (335)
.+.+.+++||++|..++.|+.+|
T Consensus 71 ~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 71 TLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHhheeeC
Confidence 99999999999999999999875
No 28
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=97.75 E-value=0.00029 Score=65.06 Aligned_cols=114 Identities=18% Similarity=0.213 Sum_probs=85.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCC---Cc--c------------CCcccccccchhH--H--HHHHHHHH
Q 019850 5 ENSKGLILAVASSAFIGSSFILKKKGLKRAGASG---TR--A------------GVGGYTYLLEPLW--W--AGMVTMIV 63 (335)
Q Consensus 5 ~~~iGvllAl~sa~~~a~g~vlqk~~~~~~~~~~---~~--~------------~~~~~~~~~~p~w--~--~G~~l~~~ 63 (335)
....|..+++.++++.+...+++|+...+.+... .+ . ..+.......+.| . .|.+..+.
T Consensus 125 ~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (260)
T TIGR00950 125 INPAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNPQALSLQWGALLYLGLIGTAL 204 (260)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHH
Confidence 3457999999999999999999999754332100 00 0 0000011112223 2 34444567
Q ss_pred HHHHHHHHHhhcchhhhhchhhHHHHHHHHHHHHHhccccccchhHHHHHHhhhe
Q 019850 64 GEVANFVAYVYAPAVLVTPLGALSIIISAVLAHFMLKERLQKMGILGCITCIVGS 118 (335)
Q Consensus 64 g~~~~~~al~~~p~slv~Pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~ 118 (335)
++.+++.++...|.+.+..+..++.+++.+++.+++||+++++++.|+.+++.|+
T Consensus 205 ~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 205 AYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 8889999999999999999999999999999999999999999999999999985
No 29
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=97.71 E-value=0.001 Score=62.15 Aligned_cols=69 Identities=22% Similarity=0.357 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHhhcchhhhhchhhHHHHHHHHHHHHHhccccccchhHHHHHHhhheeeEEEecCC
Q 019850 59 VTMIVGEVANFVAYVYAPAVLVTPLGALSIIISAVLAHFMLKERLQKMGILGCITCIVGSVVIVIHAPQ 127 (335)
Q Consensus 59 ~l~~~g~~~~~~al~~~p~slv~Pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~l~~~~~~~ 127 (335)
++|.+.+.+++.++...|.+.-|=+....++++++++.+++|+|+++++|.+..+.+.|++++-..+..
T Consensus 25 ~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~ 93 (244)
T PF04142_consen 25 LLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQ 93 (244)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcc
Confidence 679999999999999999999999999999999999999999999999999999999998887544433
No 30
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.68 E-value=0.0024 Score=62.63 Aligned_cols=283 Identities=11% Similarity=0.073 Sum_probs=153.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc---------------------CCCccCCcccccc---cchhHHHHHH
Q 019850 4 SENSKGLILAVASSAFIGSSFILKKKGLKRAGA---------------------SGTRAGVGGYTYL---LEPLWWAGMV 59 (335)
Q Consensus 4 ~~~~iGvllAl~sa~~~a~g~vlqk~~~~~~~~---------------------~~~~~~~~~~~~~---~~p~w~~G~~ 59 (335)
.+..+|++..+++.+|.+.=.+=|||. +.=+- -..+ +...++ ....|..+++
T Consensus 3 ~~~~~G~~~~~i~~~~~GS~~~p~K~~-k~w~wE~~W~v~gi~~wl~~~~~~g~~~~~---~f~~~~~~~~~~~~~~~~l 78 (345)
T PRK13499 3 NAIILGIIWHLIGGASSGSFYAPFKKV-KKWSWETMWSVGGIFSWLILPWLIAALLLP---DFWAYYSSFSGSTLLPVFL 78 (345)
T ss_pred chhHHHHHHHHHHHHHhhccccccccc-CCCchhHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHHhcCHHHHHHHHH
Confidence 367789999999999988777778772 21110 0001 112222 2345555553
Q ss_pred ---HHHHHHHHHHHHHhhcchhhhhchh-hHHHHHHHHHHHHHhcccc---ccc----hhHHHHHHhhheeeEEEecCCC
Q 019850 60 ---TMIVGEVANFVAYVYAPAVLVTPLG-ALSIIISAVLAHFMLKERL---QKM----GILGCITCIVGSVVIVIHAPQE 128 (335)
Q Consensus 60 ---l~~~g~~~~~~al~~~p~slv~Pl~-~~~lv~~~~la~~~l~e~~---~~~----~~~g~~li~~G~~l~~~~~~~~ 128 (335)
+-.+|.+.++.+......|+-.|+. +++++.+.++...+++|=- +.. ..+|++++++|+++....+...
T Consensus 79 ~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~~k 158 (345)
T PRK13499 79 FGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQLK 158 (345)
T ss_pred HHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 3568999999999999999999996 6789999999999998633 333 3569999999988887644333
Q ss_pred CCCCCHHHHHHHhcCchhhHHHHHHHHHHHHHhhe-----eccc----CCCchhHHHHH---HHH-hhhHHHHHHHHHHH
Q 019850 129 HTPNSVQEIWALATQPDFLIYVAATVSVVLALVLH-----FEPR----CGQTNILVYLG---ICS-LMGSLTVVSIKAIG 195 (335)
Q Consensus 129 ~~~~t~~el~~~~~~~~fl~y~~~~~~v~~~l~~~-----~~~r----~~~~~~~~~~~---i~g-llgg~svl~~K~v~ 195 (335)
++..+.+|- +......-+..+++..+........ .-++ .+... .|.. .++ ++|++..-+.=+.-
T Consensus 159 ~~~~~~~~~-~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~--~~~~lp~~~~~~~G~~~~n~~~~~~ 235 (345)
T PRK13499 159 ERKMGIKKA-EEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDP--LYAALPSYVVIMGGGAITNLGFCFI 235 (345)
T ss_pred ccccccccc-cccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCc--hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222111100 0000111233333333322111000 0111 12111 1111 111 23333211100000
Q ss_pred HHHH-HhhcCCCcchh-----hHHHHHHHHHHHHHHHHHHHHHHhhcc-ccc--cccchhHHHHHHHHHHHHHHHhhccc
Q 019850 196 IAIK-LTLDGISQIAY-----PQTWFFLTVAAVCVVTQLNYLNKALDT-FNA--AIVSPVYYVMFTTLTIIASAIMFKDW 266 (335)
Q Consensus 196 ~~l~-~~~~g~~~f~~-----~~~y~~l~~~~~~~l~Q~~~ln~aL~~-~~~--~~v~P~~~v~~~~~~i~~G~i~f~E~ 266 (335)
.+-+ +..+....+.. +..|++....-+.-..|..+.-.+-+. +.+ ..+.++.+-...+++.+.|. +++|+
T Consensus 236 ~~~k~~~~~~~~~~~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~ 314 (345)
T PRK13499 236 RLAKNKDLSLKADFSLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEW 314 (345)
T ss_pred HHhhCCCcccchhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhc
Confidence 0001 11100112222 455666555555555564444433322 221 22344554555567777788 59999
Q ss_pred CCCChhHHHHHHHHHHHHHHHHhhhccc
Q 019850 267 SGQDVSGIASEICGFITVLSGTIILHAT 294 (335)
Q Consensus 267 ~~~~~~~~~~~~~G~~l~i~Gv~lLs~~ 294 (335)
...+..+.....+|+++++.|.+++.-.
T Consensus 315 K~a~~k~~~~l~~G~vliI~g~~lig~~ 342 (345)
T PRK13499 315 KGASRRPVRVLSLGCVVIILAANIVGLG 342 (345)
T ss_pred cCCCccchhHHHHHHHHHHHHHHHHhhc
Confidence 9998999999999999999999998644
No 31
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=97.68 E-value=0.00018 Score=70.91 Aligned_cols=123 Identities=20% Similarity=0.156 Sum_probs=87.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCC-c------------------cCCcccc--cccchhHHHHHHH---
Q 019850 5 ENSKGLILAVASSAFIGSSFILKKKGLKRAGASGT-R------------------AGVGGYT--YLLEPLWWAGMVT--- 60 (335)
Q Consensus 5 ~~~iGvllAl~sa~~~a~g~vlqk~~~~~~~~~~~-~------------------~~~~~~~--~~~~p~w~~G~~l--- 60 (335)
++.+|.++++.|+++.++..++||+-..+-+.... . .+.+... .-.++ ++..++.
T Consensus 186 ~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~i~y~~i 264 (358)
T PLN00411 186 DWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDI-TLITIVTMAI 264 (358)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccch-HHHHHHHHHH
Confidence 35779999999999999999999986544322100 0 0000000 00111 1112221
Q ss_pred -HHHHHHHHHHHHhhcchhhhhchhhHHHHHHHHHHHHHhccccccchhHHHHHHhhheeeEEEecCCC
Q 019850 61 -MIVGEVANFVAYVYAPAVLVTPLGALSIIISAVLAHFMLKERLQKMGILGCITCIVGSVVIVIHAPQE 128 (335)
Q Consensus 61 -~~~g~~~~~~al~~~p~slv~Pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~l~~~~~~~~ 128 (335)
..+++.+|..++...+.+.+..+.-+.-+++++++..+++|+++..+++|.++++.|+.+......+|
T Consensus 265 ~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~~~ 333 (358)
T PLN00411 265 ITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKANE 333 (358)
T ss_pred HHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 23467788889999999999999999999999999999999999999999999999987765433333
No 32
>PRK11689 aromatic amino acid exporter; Provisional
Probab=97.58 E-value=0.00029 Score=67.14 Aligned_cols=115 Identities=16% Similarity=0.059 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCcc---C---------Ccccccccch-hH----HHHHHHHHHHHHHHH
Q 019850 7 SKGLILAVASSAFIGSSFILKKKGLKRAGASGTRA---G---------VGGYTYLLEP-LW----WAGMVTMIVGEVANF 69 (335)
Q Consensus 7 ~iGvllAl~sa~~~a~g~vlqk~~~~~~~~~~~~~---~---------~~~~~~~~~p-~w----~~G~~l~~~g~~~~~ 69 (335)
..|.++++.|+++.+.+.++.||-.++.+...... + .+....-.++ .| +.| +..++++.++.
T Consensus 155 ~~G~~~~l~aa~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~-~~t~~~~~l~~ 233 (295)
T PRK11689 155 PLSYGLAFIGAFIWAAYCNVTRKYARGKNGITLFFILTALALWIKYFLSPQPAMVFSLPAIIKLLLAA-AAMGFGYAAWN 233 (295)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhcCccccCCHHHHHHHHHHH-HHHHHHHHHHH
Confidence 46999999999999999999998543222100000 0 0000001112 22 222 22456788899
Q ss_pred HHHhhcchhhhhchhhHHHHHHHHHHHHHhccccccchhHHHHHHhhheeeEE
Q 019850 70 VAYVYAPAVLVTPLGALSIIISAVLAHFMLKERLQKMGILGCITCIVGSVVIV 122 (335)
Q Consensus 70 ~al~~~p~slv~Pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~l~~ 122 (335)
.++...|.+.+.++..++-+++.+++..++||+++..+++|.++|+.|+.+..
T Consensus 234 ~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~ 286 (295)
T PRK11689 234 VGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCW 286 (295)
T ss_pred HHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHh
Confidence 99999999999999999999999999999999999999999999999976553
No 33
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=97.56 E-value=7.6e-05 Score=60.34 Aligned_cols=68 Identities=31% Similarity=0.446 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcchhhhhchhhHHHHHHHHHHHHHhccccccchhHHHHHHhhheeeE
Q 019850 54 WWAGMVTMIVGEVANFVAYVYAPAVLVTPLGALSIIISAVLAHFMLKERLQKMGILGCITCIVGSVVI 121 (335)
Q Consensus 54 w~~G~~l~~~g~~~~~~al~~~p~slv~Pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~l~ 121 (335)
...|.+....+..+...++...|.+.++++..++.+++.+++..++||+++++++.|+++++.|+.++
T Consensus 57 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~ 124 (126)
T PF00892_consen 57 LFLGLLGTALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI 124 (126)
T ss_pred hHhhccceehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 34555556788899999999999999999999999999999999999999999999999999997654
No 34
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=97.54 E-value=0.00019 Score=67.86 Aligned_cols=113 Identities=19% Similarity=0.120 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhccC-CCc---c-----C-C---------ccccc-ccchhH----HHHHHHHHH
Q 019850 8 KGLILAVASSAFIGSSFILKKKGLKRAGAS-GTR---A-----G-V---------GGYTY-LLEPLW----WAGMVTMIV 63 (335)
Q Consensus 8 iGvllAl~sa~~~a~g~vlqk~~~~~~~~~-~~~---~-----~-~---------~~~~~-~~~p~w----~~G~~l~~~ 63 (335)
-|..+++.++++.+.+.++.|+...+.+.. ..- . . . +.... ...+.| +.+.+..++
T Consensus 144 ~g~~~~l~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l 223 (281)
T TIGR03340 144 KAYAWALAAALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRSMFPYARQILPSATLGGLMIGG 223 (281)
T ss_pred hHHHHHHHHHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHH
Confidence 467789999999999998888753322210 000 0 0 0 00000 011111 233344567
Q ss_pred HHHHHHHHHhhcchhhhhchhhHHHHHHHHHHHHHhccccccchhHHHHHHhhheee
Q 019850 64 GEVANFVAYVYAPAVLVTPLGALSIIISAVLAHFMLKERLQKMGILGCITCIVGSVV 120 (335)
Q Consensus 64 g~~~~~~al~~~p~slv~Pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~l 120 (335)
++.+++.+++..|.+.+.++.-++.+++.+++.+++||+++..+++|..+++.|+.+
T Consensus 224 ~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 224 AYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 888999999999999999999999999999999999999999999999999999764
No 35
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.53 E-value=0.0012 Score=54.46 Aligned_cols=73 Identities=15% Similarity=0.171 Sum_probs=62.1
Q ss_pred ccchhHHHHHHH-HHHHHHHHHHHHhhcchhhhhchhh-HHHHHHHHHHHHHhccccccchhHHHHHHhhheeeE
Q 019850 49 LLEPLWWAGMVT-MIVGEVANFVAYVYAPAVLVTPLGA-LSIIISAVLAHFMLKERLQKMGILGCITCIVGSVVI 121 (335)
Q Consensus 49 ~~~p~w~~G~~l-~~~g~~~~~~al~~~p~slv~Pl~~-~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~l~ 121 (335)
+++|.|...+.. +++++.+-..|+...|.++..|+-+ ++.+.+.+.+.+++||+++..++.|+.+++.|++.+
T Consensus 32 f~~~~~~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 32 FRRKIYGILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 456666666644 6677778888899999999999865 899999999999999999999999999999997754
No 36
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=97.48 E-value=0.00077 Score=64.09 Aligned_cols=117 Identities=15% Similarity=0.072 Sum_probs=85.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCC----------------CccCCcccccccchhHH----HHHHHHHHHH
Q 019850 6 NSKGLILAVASSAFIGSSFILKKKGLKRAGASG----------------TRAGVGGYTYLLEPLWW----AGMVTMIVGE 65 (335)
Q Consensus 6 ~~iGvllAl~sa~~~a~g~vlqk~~~~~~~~~~----------------~~~~~~~~~~~~~p~w~----~G~~l~~~g~ 65 (335)
...|.++++.++++.+.+.+..||..++.+... .-.+...........|+ .|++..++++
T Consensus 148 ~~~G~l~~l~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~~~ 227 (292)
T PRK11272 148 NPWGAILILIASASWAFGSVWSSRLPLPVGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSIIAI 227 (292)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHHHH
Confidence 356999999999999999999888532211000 00000000000112232 3444456778
Q ss_pred HHHHHHHhhcchhhhhchhhHHHHHHHHHHHHHhccccccchhHHHHHHhhheeeEE
Q 019850 66 VANFVAYVYAPAVLVTPLGALSIIISAVLAHFMLKERLQKMGILGCITCIVGSVVIV 122 (335)
Q Consensus 66 ~~~~~al~~~p~slv~Pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~l~~ 122 (335)
.++..++...|.+.+..+..++-+++++++.+++||+++..+++|.++++.|+.+..
T Consensus 228 ~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~ 284 (292)
T PRK11272 228 SAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVT 284 (292)
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999977653
No 37
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=97.46 E-value=0.00036 Score=65.69 Aligned_cols=268 Identities=18% Similarity=0.310 Sum_probs=138.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhccC-C-Ccc-CCc-----ccccccch--------hH--HHHHHHHHHHHHHH
Q 019850 7 SKGLILAVASSAFIGSSFILKKKGLKRAGAS-G-TRA-GVG-----GYTYLLEP--------LW--WAGMVTMIVGEVAN 68 (335)
Q Consensus 7 ~iGvllAl~sa~~~a~g~vlqk~~~~~~~~~-~-~~~-~~~-----~~~~~~~p--------~w--~~G~~l~~~g~~~~ 68 (335)
.+|+++..+| .+.+...++-++...-.|++ . .|- ... ..-|.+.| .| +-|+.-. .|..+.
T Consensus 37 ~~gl~l~~vs-~ff~~~~vv~t~~~e~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R~~LiLRg~mG~-tgvmlm 114 (346)
T KOG4510|consen 37 NLGLLLLTVS-YFFNSCMVVSTKVLENDPMELASFRLLVRMLITYPCLIYYMQPVIGPEGKRKWLILRGFMGF-TGVMLM 114 (346)
T ss_pred ccCceehhhH-HHHhhHHHhhhhhhccChhHhhhhhhhhehhhhheEEEEEeeeeecCCCcEEEEEeehhhhh-hHHHHH
Confidence 3577788888 77777777777765443331 1 010 000 01111111 12 1222111 344577
Q ss_pred HHHHhhcchhhhhchhhHHHHHHHHHHHHHhccccccchhHHHHHHhhheeeEE----EecCCCCCCCCHHHHHHHhcCc
Q 019850 69 FVAYVYAPAVLVTPLGALSIIISAVLAHFMLKERLQKMGILGCITCIVGSVVIV----IHAPQEHTPNSVQEIWALATQP 144 (335)
Q Consensus 69 ~~al~~~p~slv~Pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~l~~----~~~~~~~~~~t~~el~~~~~~~ 144 (335)
..||...|++=..-+.-.+-+++.++|..+||||.|+.|-+|......|+++++ +|+.+++...+.. .-+..|
T Consensus 115 yya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~---~~~~~~ 191 (346)
T KOG4510|consen 115 YYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQ---VEYDIP 191 (346)
T ss_pred HHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCcccccccc---ccccCC
Confidence 777777777666566677889999999999999999999999999999999885 4444332211111 111233
Q ss_pred hhhHHHHHHHH-HHHHHhh-eecccCCCchhHHHHHHHHhhhHHHHHHHHHHHHHHHHhhcCCCcc-hhhHH-HHHHHHH
Q 019850 145 DFLIYVAATVS-VVLALVL-HFEPRCGQTNILVYLGICSLMGSLTVVSIKAIGIAIKLTLDGISQI-AYPQT-WFFLTVA 220 (335)
Q Consensus 145 ~fl~y~~~~~~-v~~~l~~-~~~~r~~~~~~~~~~~i~gllgg~svl~~K~v~~~l~~~~~g~~~f-~~~~~-y~~l~~~ 220 (335)
...+-+.-+.. .....+. +..++.+..-..-|.+.-++.- +.+-.-.+ |.-|+ ..+.= |+++..+
T Consensus 192 gt~aai~s~lf~asvyIilR~iGk~~h~~msvsyf~~i~lV~--s~I~~~~i---------g~~~lP~cgkdr~l~~~lG 260 (346)
T KOG4510|consen 192 GTVAAISSVLFGASVYIILRYIGKNAHAIMSVSYFSLITLVV--SLIGCASI---------GAVQLPHCGKDRWLFVNLG 260 (346)
T ss_pred chHHHHHhHhhhhhHHHHHHHhhccccEEEEehHHHHHHHHH--HHHHHhhc---------cceecCccccceEEEEEeh
Confidence 32211111111 1111111 1222211111122322222211 11100001 11111 11222 2333444
Q ss_pred HHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHHhhhccccCCc
Q 019850 221 AVCVVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGTIILHATREHE 298 (335)
Q Consensus 221 ~~~~l~Q~~~ln~aL~~~~~~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~l~i~Gv~lLs~~~~~~ 298 (335)
+.+.+.| .++.+++|+-.+-. +.++.+.+.+.+.+.-+++|+|+-. .|.|. |.+.++..++..+++|..+
T Consensus 261 vfgfigQ-IllTm~lQiErAGp-vaim~~~dvvfAf~wqv~ff~~~Pt--~ws~~----Ga~~vvsS~v~~a~~kwa~ 330 (346)
T KOG4510|consen 261 VFGFIGQ-ILLTMGLQIERAGP-VAIMTYTDVVFAFFWQVLFFGHWPT--IWSWV----GAVMVVSSTVWVALKKWAG 330 (346)
T ss_pred hhhhHHH-HHHHHHhhhhccCC-eehhhHHHHHHHHHHHHHHhcCCCh--HHHhh----ceeeeehhHHHHHHHHHhc
Confidence 5555554 58899998654433 5677888999999999999999743 45553 4444455555555555444
No 38
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.43 E-value=0.0015 Score=53.38 Aligned_cols=72 Identities=14% Similarity=0.017 Sum_probs=61.6
Q ss_pred cchhHHHHH-HHHHHHHHHHHHHHhhcchhhhhchhh-HHHHHHHHHHHHHhccccccchhHHHHHHhhheeeE
Q 019850 50 LEPLWWAGM-VTMIVGEVANFVAYVYAPAVLVTPLGA-LSIIISAVLAHFMLKERLQKMGILGCITCIVGSVVI 121 (335)
Q Consensus 50 ~~p~w~~G~-~l~~~g~~~~~~al~~~p~slv~Pl~~-~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~l~ 121 (335)
+++.|...+ .+++.++.+-..|+...|.++..++-+ ++.+.+.+.+.+++||+++..++.|+.+++.|++.+
T Consensus 27 ~~~~~~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l 100 (105)
T PRK11431 27 SRLTPSIITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGL 100 (105)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Confidence 355554444 457778888888899999999999866 999999999999999999999999999999998765
No 39
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=97.35 E-value=0.0018 Score=61.71 Aligned_cols=115 Identities=20% Similarity=0.213 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCcc---C---------------Ccccc------cccchh-HH----HH
Q 019850 7 SKGLILAVASSAFIGSSFILKKKGLKRAGASGTRA---G---------------VGGYT------YLLEPL-WW----AG 57 (335)
Q Consensus 7 ~iGvllAl~sa~~~a~g~vlqk~~~~~~~~~~~~~---~---------------~~~~~------~~~~p~-w~----~G 57 (335)
..|.++++.++++.+...+++|+-.++.+....-. . .+... .-.++. |+ .|
T Consensus 142 ~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 221 (299)
T PRK11453 142 MLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLA 221 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHH
Confidence 47999999999999999999998533221100000 0 00000 001222 22 24
Q ss_pred HHHHHHHHHHHHHHHhhcchhhhhchhhHHHHHHHHHHHHHhccccccchhHHHHHHhhheeeE
Q 019850 58 MVTMIVGEVANFVAYVYAPAVLVTPLGALSIIISAVLAHFMLKERLQKMGILGCITCIVGSVVI 121 (335)
Q Consensus 58 ~~l~~~g~~~~~~al~~~p~slv~Pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~l~ 121 (335)
++..++++.++..++...+..-+.++..++-+++.+++.+++||+++..+++|.++++.|+.+.
T Consensus 222 i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~ 285 (299)
T PRK11453 222 FVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYIN 285 (299)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHH
Confidence 4445677788888888889999999999999999999999999999999999999999997654
No 40
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=97.25 E-value=0.007 Score=49.81 Aligned_cols=80 Identities=16% Similarity=0.264 Sum_probs=60.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHH
Q 019850 208 IAYPQTWFFLTVAAVCVVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSG 287 (335)
Q Consensus 208 f~~~~~y~~l~~~~~~~l~Q~~~ln~aL~~~~~~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~l~i~G 287 (335)
+++|...........+...-..++..++++-|....+|+.+ .-++.+.+.|..+|+|.. ++.+ .+|..++++|
T Consensus 31 ~~~~~~l~~~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~-l~~v~~~~~~~l~f~E~l--s~~~----~~Gi~lii~G 103 (111)
T PRK15051 31 KRRKHIVLWLGLALACLGLAMVLWLLVLQNVPVGIAYPMLS-LNFVWVTLAAVKLWHEPV--SPRH----WCGVAFIIGG 103 (111)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHH-HHHHHHHHHHHHHhCCCC--CHHH----HHHHHHHHHH
Confidence 45554444444444444455678889999999999999998 788888999999999954 4443 4677888999
Q ss_pred Hhhhccc
Q 019850 288 TIILHAT 294 (335)
Q Consensus 288 v~lLs~~ 294 (335)
+++++++
T Consensus 104 v~~i~~~ 110 (111)
T PRK15051 104 IVILGST 110 (111)
T ss_pred HHHHhcc
Confidence 9998864
No 41
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.23 E-value=0.003 Score=51.63 Aligned_cols=72 Identities=14% Similarity=0.092 Sum_probs=61.8
Q ss_pred cchhHHHHH-HHHHHHHHHHHHHHhhcchhhhhch-hhHHHHHHHHHHHHHhccccccchhHHHHHHhhheeeE
Q 019850 50 LEPLWWAGM-VTMIVGEVANFVAYVYAPAVLVTPL-GALSIIISAVLAHFMLKERLQKMGILGCITCIVGSVVI 121 (335)
Q Consensus 50 ~~p~w~~G~-~l~~~g~~~~~~al~~~p~slv~Pl-~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~l~ 121 (335)
+|+.|.+.+ +.+++++.+-..|+...|+++.+++ .+++.+.+.+.+..++||+++..+++|..+++.|++.+
T Consensus 28 ~~~~~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~L 101 (106)
T COG2076 28 TRLWPSILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGL 101 (106)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHh
Confidence 455566655 4477888888889999999999987 67899999999999999999999999999999997755
No 42
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.11 E-value=0.011 Score=49.56 Aligned_cols=66 Identities=12% Similarity=0.286 Sum_probs=53.7
Q ss_pred HHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHHhhhccccCC
Q 019850 226 TQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGTIILHATREH 297 (335)
Q Consensus 226 ~Q~~~ln~aL~~~~~~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~l~i~Gv~lLs~~~~~ 297 (335)
.-.+++.+++|+-|..+.+|+..-.-.+...+.|..+|+|..+ .. -.+|..+++.|++.+....++
T Consensus 42 ~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s--~~----~~~gi~lIi~GVi~l~l~~~~ 107 (120)
T PRK10452 42 LSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLS--LM----KIAGLTTLVAGIVLIKSGTRK 107 (120)
T ss_pred HHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCC--HH----HHHHHHHHHHHHHHhhcCCCC
Confidence 3456899999999999999999888888889999999999654 33 447788899999999655543
No 43
>COG2510 Predicted membrane protein [Function unknown]
Probab=97.08 E-value=0.0038 Score=52.76 Aligned_cols=56 Identities=18% Similarity=0.264 Sum_probs=45.0
Q ss_pred HHhhccccccccchhHHHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHHhhhccc
Q 019850 232 NKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGTIILHAT 294 (335)
Q Consensus 232 n~aL~~~~~~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~l~i~Gv~lLs~~ 294 (335)
=+||+.++++.+.|+= -..+..+++.+.++++|..+. .+ ..|++++.+|+++++++
T Consensus 85 f~ALk~G~as~VvPld-k~svvl~~lls~lfL~E~ls~--~~----~iG~~LI~~Gailvs~~ 140 (140)
T COG2510 85 FRALKKGKASRVVPLD-KTSVVLAVLLSILFLGERLSL--PT----WIGIVLIVIGAILVSLR 140 (140)
T ss_pred HHHHhcCCcceEEEcc-cccHHHHHHHHHHHhcCCCCH--HH----HHHHHHHHhCeeeEecC
Confidence 3799999999999985 455667888999999996554 43 37888999999999864
No 44
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.03 E-value=0.015 Score=47.96 Aligned_cols=80 Identities=11% Similarity=0.112 Sum_probs=62.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHH
Q 019850 207 QIAYPQTWFFLTVAAVCVVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLS 286 (335)
Q Consensus 207 ~f~~~~~y~~l~~~~~~~l~Q~~~ln~aL~~~~~~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~l~i~ 286 (335)
.|++|.+....+.+.. .-.+++.+++++-|....+|+-.-.-+....+.|.++|+|..+ +. -..|..+++.
T Consensus 26 gf~~~~~~i~~~~~~~---~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~--~~----~~~gi~lIi~ 96 (110)
T PRK09541 26 GFTRLWPSVGTIICYC---ASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLD--LP----AIIGMMLICA 96 (110)
T ss_pred CCCchhHHHHHHHHHH---HHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCC--HH----HHHHHHHHHH
Confidence 4788887775544433 3345899999999999999999888889999999999999654 44 3467788999
Q ss_pred HHhhhcccc
Q 019850 287 GTIILHATR 295 (335)
Q Consensus 287 Gv~lLs~~~ 295 (335)
|++++....
T Consensus 97 GVi~l~l~~ 105 (110)
T PRK09541 97 GVLVINLLS 105 (110)
T ss_pred HHHHHhcCC
Confidence 999995443
No 45
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=96.80 E-value=0.054 Score=52.95 Aligned_cols=75 Identities=12% Similarity=0.191 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcchhhhhchhhHHHHHHHHHHHHHhccccccchhHHHHHHhhheeeEEEecCCC
Q 019850 54 WWAGMVTMIVGEVANFVAYVYAPAVLVTPLGALSIIISAVLAHFMLKERLQKMGILGCITCIVGSVVIVIHAPQE 128 (335)
Q Consensus 54 w~~G~~l~~~g~~~~~~al~~~p~slv~Pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~l~~~~~~~~ 128 (335)
|-+=-++|.+-+-++.++++-.|.+.=|....+-++.+++++..+|++|+++++|.+.++...|++++-+..+++
T Consensus 95 ~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~ 169 (345)
T KOG2234|consen 95 VSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSP 169 (345)
T ss_pred HHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCC
Confidence 344446788887899999999999999999999999999999999999999999999999999988875333333
No 46
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=96.75 E-value=0.0082 Score=55.36 Aligned_cols=115 Identities=24% Similarity=0.264 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhccCC-Cc------c----------CCcccccccchhHH--HHHHHHHHHHHH
Q 019850 7 SKGLILAVASSAFIGSSFILKKKGLKRAGASG-TR------A----------GVGGYTYLLEPLWW--AGMVTMIVGEVA 67 (335)
Q Consensus 7 ~iGvllAl~sa~~~a~g~vlqk~~~~~~~~~~-~~------~----------~~~~~~~~~~p~w~--~G~~l~~~g~~~ 67 (335)
..|+++++.++++.+...+.+|+-. +.+... .. . ..+.....+...+. .|++..+++..+
T Consensus 153 ~~g~~~~l~a~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~ 231 (292)
T COG0697 153 LLGLLLALAAALLWALYTALVKRLS-RLGPVTLALLLQLLLALLLLLLFFLSGFGAPILSRAWLLLLYLGVFSTGLAYLL 231 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999998644 211100 00 0 00000111112222 233333456788
Q ss_pred HHHHHhhcchhhhhchhhHHHHHHHHHHHHHhccccccchhHHHHHHhhheeeEE
Q 019850 68 NFVAYVYAPAVLVTPLGALSIIISAVLAHFMLKERLQKMGILGCITCIVGSVVIV 122 (335)
Q Consensus 68 ~~~al~~~p~slv~Pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~l~~ 122 (335)
+..++...|.+.+.++..+..+++.+++..+++|+++.+++.|+++++.|+.+..
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~ 286 (292)
T COG0697 232 WYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLAS 286 (292)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999999999999999999999999976553
No 47
>PRK11431 multidrug efflux system protein; Provisional
Probab=96.68 E-value=0.039 Score=45.14 Aligned_cols=78 Identities=10% Similarity=0.146 Sum_probs=62.0
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHH
Q 019850 206 SQIAYPQTWFFLTVAAVCVVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVL 285 (335)
Q Consensus 206 ~~f~~~~~y~~l~~~~~~~l~Q~~~ln~aL~~~~~~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~l~i 285 (335)
+.|++|.++++.+.+... -.+++.+++|+-|....+++-...-+....+.|.++|+|..+ +. -.+|..+++
T Consensus 24 ~gf~~~~~~~~~i~~~~~---sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~--~~----~~~gi~lIi 94 (105)
T PRK11431 24 HGFSRLTPSIITVTAMIV---SMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESAS--PA----RLLSLALIV 94 (105)
T ss_pred hCCccHHHHHHHHHHHHH---HHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCC--HH----HHHHHHHHH
Confidence 357888888766554433 345999999999999999999988899999999999999654 44 346778899
Q ss_pred HHHhhhc
Q 019850 286 SGTIILH 292 (335)
Q Consensus 286 ~Gv~lLs 292 (335)
.|++.|.
T Consensus 95 ~GVv~l~ 101 (105)
T PRK11431 95 AGIIGLK 101 (105)
T ss_pred HHHHhhh
Confidence 9999984
No 48
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=96.46 E-value=0.11 Score=43.91 Aligned_cols=74 Identities=11% Similarity=0.150 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHH-HhhcccCCCChhHHHHHHHHHHHHHHHHhhhcccc
Q 019850 217 LTVAAVCVVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASA-IMFKDWSGQDVSGIASEICGFITVLSGTIILHATR 295 (335)
Q Consensus 217 l~~~~~~~l~Q~~~ln~aL~~~~~~~v~P~~~v~~~~~~i~~G~-i~f~E~~~~~~~~~~~~~~G~~l~i~Gv~lLs~~~ 295 (335)
+..++++......+.+.+|++.|.+...|+.........+..-. ++|+|..+ +. ..+|.+++++|++++++++
T Consensus 51 i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls--~~----~~iGi~lIi~GV~lv~~~~ 124 (129)
T PRK02971 51 VLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFS--LK----KTLGVACIMLGVWLINLPT 124 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCC--HH----HHHHHHHHHHHHHHhccCC
Confidence 34445555566778999999999999999987776444444333 58999543 44 4578889999999998765
Q ss_pred C
Q 019850 296 E 296 (335)
Q Consensus 296 ~ 296 (335)
+
T Consensus 125 ~ 125 (129)
T PRK02971 125 T 125 (129)
T ss_pred C
Confidence 5
No 49
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=96.42 E-value=0.021 Score=47.08 Aligned_cols=77 Identities=13% Similarity=0.191 Sum_probs=61.0
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHH
Q 019850 206 SQIAYPQTWFFLTVAAVCVVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVL 285 (335)
Q Consensus 206 ~~f~~~~~y~~l~~~~~~~l~Q~~~ln~aL~~~~~~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~l~i 285 (335)
+.|++|.+.+..+.+.... .+++.+++|+-|....+|+-...-+....+.|.++|+|..+ +. -..|..+++
T Consensus 30 ~gf~~~~~~~~~~~~~~~s---f~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~--~~----~~~gi~lIi 100 (109)
T PRK10650 30 DGFRRKIYGILSLAAVLAA---FSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLN--RK----GWIGLVLLL 100 (109)
T ss_pred cCCcchHHHHHHHHHHHHH---HHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCC--HH----HHHHHHHHH
Confidence 3588888877665544333 35899999999999999999989999999999999999654 44 346777888
Q ss_pred HHHhhh
Q 019850 286 SGTIIL 291 (335)
Q Consensus 286 ~Gv~lL 291 (335)
.|++.|
T Consensus 101 ~GVi~l 106 (109)
T PRK10650 101 AGMVMI 106 (109)
T ss_pred HHHHHh
Confidence 999887
No 50
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=96.36 E-value=0.067 Score=43.81 Aligned_cols=78 Identities=15% Similarity=0.159 Sum_probs=61.2
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHH
Q 019850 207 QIAYPQTWFFLTVAAVCVVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLS 286 (335)
Q Consensus 207 ~f~~~~~y~~l~~~~~~~l~Q~~~ln~aL~~~~~~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~l~i~ 286 (335)
.|+++.+++..+.+.... .++|.+|+|+-|....+++-.-.-+....+.|.++|+|..+ +. -..|+.++++
T Consensus 26 gf~~~~~~il~~v~~~~s---f~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~--~~----~~~gl~Liia 96 (106)
T COG2076 26 GFTRLWPSILTIVGYGLS---FYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLS--LI----KLLGLALILA 96 (106)
T ss_pred cccccchHHHHHHHHHHH---HHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCC--HH----HHHHHHHHHH
Confidence 477777777555544433 34899999999999999999999999999999999999654 33 3467788999
Q ss_pred HHhhhcc
Q 019850 287 GTIILHA 293 (335)
Q Consensus 287 Gv~lLs~ 293 (335)
|++.|-.
T Consensus 97 Gvi~Lk~ 103 (106)
T COG2076 97 GVIGLKL 103 (106)
T ss_pred HHHHhhh
Confidence 9998854
No 51
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=96.33 E-value=0.68 Score=44.33 Aligned_cols=117 Identities=19% Similarity=0.191 Sum_probs=73.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh----hhhhhccC--------------CCccCCcccccccchhHHHHHHHHHHHHH
Q 019850 5 ENSKGLILAVASSAFIGSSFILKKK----GLKRAGAS--------------GTRAGVGGYTYLLEPLWWAGMVTMIVGEV 66 (335)
Q Consensus 5 ~~~iGvllAl~sa~~~a~g~vlqk~----~~~~~~~~--------------~~~~~~~~~~~~~~p~w~~G~~l~~~g~~ 66 (335)
+.--|+++++.+.+.-+.--...|. +..+.-.+ -.|.-.+.++..|+|+=+....+..+=..
T Consensus 4 ~~~~Gil~~l~Ay~lwG~lp~y~kll~~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li~ 83 (293)
T COG2962 4 DSRKGILLALLAYLLWGLLPLYFKLLEPLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALLIG 83 (293)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 3445888888888886654433333 21111000 00111124567888877777777666566
Q ss_pred HHHHHHhhcchh---hhhchhh-HHHHHHHHHHHHHhccccccchhHHHHHHhhheeeE
Q 019850 67 ANFVAYVYAPAV---LVTPLGA-LSIIISAVLAHFMLKERLQKMGILGCITCIVGSVVI 121 (335)
Q Consensus 67 ~~~~al~~~p~s---lv~Pl~~-~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~l~ 121 (335)
.|..-+-++|-+ +=+.+|= +.-++|.++++.++|||+++.+|+++.+..+|+...
T Consensus 84 ~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~ 142 (293)
T COG2962 84 LNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQ 142 (293)
T ss_pred HHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHH
Confidence 777777777655 1111211 233467889999999999999999999999997654
No 52
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=96.31 E-value=0.12 Score=51.04 Aligned_cols=62 Identities=18% Similarity=0.297 Sum_probs=54.8
Q ss_pred HHHHhhcchhhhhchhhHHHHHHHHHHHHHhccccccchhHHHHHHhhheeeEEEecCCCCC
Q 019850 69 FVAYVYAPAVLVTPLGALSIIISAVLAHFMLKERLQKMGILGCITCIVGSVVIVIHAPQEHT 130 (335)
Q Consensus 69 ~~al~~~p~slv~Pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~l~~~~~~~~~~ 130 (335)
=+||++-..+-..=+.+.+=+|++.++..+.+||+|..+.+++++.+.|++++...+.++..
T Consensus 177 naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~ 238 (416)
T KOG2765|consen 177 NAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNS 238 (416)
T ss_pred HHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccc
Confidence 35788888888888999999999999999999999999999999999999998877655443
No 53
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=95.88 E-value=0.018 Score=54.84 Aligned_cols=61 Identities=11% Similarity=-0.041 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHhhcchhhhhchhhHHHHHHHHHHHHHhccccccchhHHHHHHhhheeeEE
Q 019850 62 IVGEVANFVAYVYAPAVLVTPLGALSIIISAVLAHFMLKERLQKMGILGCITCIVGSVVIV 122 (335)
Q Consensus 62 ~~g~~~~~~al~~~p~slv~Pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~l~~ 122 (335)
.+++.++..+++..|.+.++++.-++.+++.+++.++++|+++..++.|+.+++.|+.++.
T Consensus 224 ~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~ 284 (296)
T PRK15430 224 TVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFV 284 (296)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 3678899999999999999999999999999999999999999999999999988877654
No 54
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=95.86 E-value=0.078 Score=51.96 Aligned_cols=123 Identities=21% Similarity=0.180 Sum_probs=78.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccC------C--------------CccCCcccccccchhHHHHHHHHH
Q 019850 3 LSENSKGLILAVASSAFIGSSFILKKKGLKRAGAS------G--------------TRAGVGGYTYLLEPLWWAGMVTMI 62 (335)
Q Consensus 3 ~~~~~iGvllAl~sa~~~a~g~vlqk~~~~~~~~~------~--------------~~~~~~~~~~~~~p~w~~G~~l~~ 62 (335)
.++.++|-++++.||+++|+..++|++-.++.+.. + .|. +..+.-.+ |-.+. +++
T Consensus 163 ~~~~i~GDll~l~~a~lya~~nV~~E~~v~~~~~~~~lg~~Glfg~ii~~iq~~ile~~--~i~~~~w~--~~~~~-~~v 237 (334)
T PF06027_consen 163 GSNPILGDLLALLGAILYAVSNVLEEKLVKKAPRVEFLGMLGLFGFIISGIQLAILERS--GIESIHWT--SQVIG-LLV 237 (334)
T ss_pred CCccchhHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHheehh--hhhccCCC--hhhHH-HHH
Confidence 35678999999999999999999999976654321 0 010 11222111 22111 122
Q ss_pred HHHHHHHHHHhhcchhh-------hhchhhHHHHHHHHHHHHHhccccccchhHHHHHHhhheeeEEEecCCCCC
Q 019850 63 VGEVANFVAYVYAPAVL-------VTPLGALSIIISAVLAHFMLKERLQKMGILGCITCIVGSVVIVIHAPQEHT 130 (335)
Q Consensus 63 ~g~~~~~~al~~~p~sl-------v~Pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~l~~~~~~~~~~ 130 (335)
...++.+.-+...|..+ +.-=...+-++++++..++.|+++++.-++|.+++++|.++.....+++++
T Consensus 238 ~~~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~~~ 312 (334)
T PF06027_consen 238 GYALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPEEE 312 (334)
T ss_pred HHHHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCcccc
Confidence 22234444444444432 333334567889999999999999999999999999998777655544433
No 55
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=95.84 E-value=0.87 Score=43.68 Aligned_cols=72 Identities=18% Similarity=0.240 Sum_probs=65.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcchhhhhchhhHHHHHHHHHHHHHhccccccchhHHHHHHhhheeeEEEe
Q 019850 53 LWWAGMVTMIVGEVANFVAYVYAPAVLVTPLGALSIIISAVLAHFMLKERLQKMGILGCITCIVGSVVIVIH 124 (335)
Q Consensus 53 ~w~~G~~l~~~g~~~~~~al~~~p~slv~Pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~l~~~~ 124 (335)
....=.++++.|..+..++|.....|--|-+=+.-++|+-+++..+||++++.++|.|+..+..|.+.+...
T Consensus 88 lfl~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~ 159 (372)
T KOG3912|consen 88 LFLPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSL 159 (372)
T ss_pred eecChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeee
Confidence 344456889999999999999999999999999999999999999999999999999999999998887655
No 56
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=95.75 E-value=0.089 Score=41.78 Aligned_cols=66 Identities=11% Similarity=0.046 Sum_probs=32.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHhhcccCCCChhHHHHH
Q 019850 207 QIAYPQTWFFLTVAAVCVVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASE 277 (335)
Q Consensus 207 ~f~~~~~y~~l~~~~~~~l~Q~~~ln~aL~~~~~~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~ 277 (335)
.++++.+....+. +...-.+++.+++|+-|....+|+..-.-+....+.|..+|+|..+ +.++.+.
T Consensus 25 g~~~~~~~~~~~~---~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s--~~~~~gi 90 (93)
T PF00893_consen 25 GFTQLIPTILAVV---GYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLS--LSKWLGI 90 (93)
T ss_dssp ---------HHHH---HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH----------HHHH
T ss_pred hhcchhhHHHHHH---HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCC--HHHHhhe
Confidence 4666665554333 3334456999999999999999999988889999999999999554 4555443
No 57
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=95.23 E-value=0.14 Score=48.62 Aligned_cols=88 Identities=10% Similarity=0.217 Sum_probs=62.8
Q ss_pred hHHHHH-HHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHHh
Q 019850 211 PQTWFF-LTVAAVCVVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGTI 289 (335)
Q Consensus 211 ~~~y~~-l~~~~~~~l~Q~~~ln~aL~~~~~~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~l~i~Gv~ 289 (335)
+..+.+ ++.++.=.+.|. .+-++.+.-..+...|+-+...-+.+.+.|+++|+||... .++..=.++++++++|++
T Consensus 42 ~~~~~~~~lsG~~W~iGq~-~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~--~~~~~G~~Al~liiiGv~ 118 (269)
T PF06800_consen 42 GTSFIVAFLSGAFWAIGQI-GQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTT--TQKIIGFLALVLIIIGVI 118 (269)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCc--chHHHHHHHHHHHHHHHH
Confidence 344433 333333344442 3335666666778899999999999999999999999864 566667778899999999
Q ss_pred hhccccCCcCCC
Q 019850 290 ILHATREHEQTT 301 (335)
Q Consensus 290 lLs~~~~~~~~~ 301 (335)
+-+.++++++++
T Consensus 119 lts~~~~~~~~~ 130 (269)
T PF06800_consen 119 LTSYQDKKSDKS 130 (269)
T ss_pred Hhcccccccccc
Confidence 887776666543
No 58
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=95.09 E-value=0.17 Score=42.65 Aligned_cols=112 Identities=21% Similarity=0.304 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhh----ccCC-------------------------CccCCccccccc-----chhH
Q 019850 9 GLILAVASSAFIGSSFILKKKGLKRA----GASG-------------------------TRAGVGGYTYLL-----EPLW 54 (335)
Q Consensus 9 GvllAl~sa~~~a~g~vlqk~~~~~~----~~~~-------------------------~~~~~~~~~~~~-----~p~w 54 (335)
|.++++.|+++.+.-.+++|+..++. ++.+ .+.........+ .+..
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 67889999999999999988876663 1100 000000001111 1122
Q ss_pred HHHHH-HHHHHH---HHHHHHHhhcchhhhhchhhHHHHHHHHHHHHHhccccccchhHHHHHHhhheee
Q 019850 55 WAGMV-TMIVGE---VANFVAYVYAPAVLVTPLGALSIIISAVLAHFMLKERLQKMGILGCITCIVGSVV 120 (335)
Q Consensus 55 ~~G~~-l~~~g~---~~~~~al~~~p~slv~Pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~l 120 (335)
+.-++ ..+.+. ..++..+...+..--+=++.+--+.+.+++..+++|++|.+++.|+.+++.|..+
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~ 150 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLL 150 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhe
Confidence 22222 122333 3445555666666677788888999999999999999999999999999999653
No 59
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=95.03 E-value=0.59 Score=37.94 Aligned_cols=65 Identities=17% Similarity=0.195 Sum_probs=47.0
Q ss_pred HHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHHhhhccccCCc
Q 019850 226 TQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGTIILHATREHE 298 (335)
Q Consensus 226 ~Q~~~ln~aL~~~~~~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~l~i~Gv~lLs~~~~~~ 298 (335)
.+......|++..+ ..+. ......++++.+.|.++|+|. .++.. ..|.+++.+|++++..++...
T Consensus 47 ~~~~~~~~a~~~~~-~~v~-~i~~~~pi~~~ll~~~~~~er--~~~~~----~~a~~l~~~Gv~li~~~~~~~ 111 (113)
T PF13536_consen 47 VAYLLFFYALSYAP-ALVA-AIFSLSPIFTALLSWLFFKER--LSPRR----WLAILLILIGVILIAWSDLTG 111 (113)
T ss_pred HHHHHHHHHHHhCc-HHHH-HHHHHHHHHHHHHHHHHhcCC--CCHHH----HHHHHHHHHHHHHHhhhhccc
Confidence 34556667888887 4555 445579999999999999994 44553 356678889999997665543
No 60
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=95.01 E-value=0.25 Score=46.58 Aligned_cols=124 Identities=18% Similarity=0.172 Sum_probs=87.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccC-C--------------CccCCcccccccchhHHHHHHHHH----HHH
Q 019850 5 ENSKGLILAVASSAFIGSSFILKKKGLKRAGAS-G--------------TRAGVGGYTYLLEPLWWAGMVTMI----VGE 65 (335)
Q Consensus 5 ~~~iGvllAl~sa~~~a~g~vlqk~~~~~~~~~-~--------------~~~~~~~~~~~~~p~w~~G~~l~~----~g~ 65 (335)
.-..|+.+|+.+..|-+.=.+.-||..+..+.. + ....+....++.-+.-..++..-+ +=+
T Consensus 145 lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~g~~g~a~gm~vAaviv~Pig~~~ag~~l~~p~ll~laLgvavlSSalPY 224 (292)
T COG5006 145 LDPVGVALALGAGACWALYIVLGQRAGRAEHGTAGVAVGMLVAALIVLPIGAAQAGPALFSPSLLPLALGVAVLSSALPY 224 (292)
T ss_pred CCHHHHHHHHHHhHHHHHHHHHcchhcccCCCchHHHHHHHHHHHHHhhhhhhhcchhhcChHHHHHHHHHHHHhcccch
Confidence 345799999999999887777766643211110 0 000111223333333344444433 345
Q ss_pred HHHHHHHhhcchhhhhchhhHHHHHHHHHHHHHhccccccchhHHHHHHhhheeeEEEecCCC
Q 019850 66 VANFVAYVYAPAVLVTPLGALSIIISAVLAHFMLKERLQKMGILGCITCIVGSVVIVIHAPQE 128 (335)
Q Consensus 66 ~~~~~al~~~p~slv~Pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~l~~~~~~~~ 128 (335)
.+..+||+-.|...-.-+.+++-.+..+.+..++||++|..||.|+.+++.++.-.....+++
T Consensus 225 sLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~~~~ 287 (292)
T COG5006 225 SLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTLTARKP 287 (292)
T ss_pred HHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccccccCCC
Confidence 689999999999999999999999999999999999999999999999999977665444443
No 61
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=95.00 E-value=0.044 Score=52.31 Aligned_cols=114 Identities=21% Similarity=0.212 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCC--cc-----CC---c-cc---ccccchhHH----HHHHHHHHHHHHH
Q 019850 7 SKGLILAVASSAFIGSSFILKKKGLKRAGASGT--RA-----GV---G-GY---TYLLEPLWW----AGMVTMIVGEVAN 68 (335)
Q Consensus 7 ~iGvllAl~sa~~~a~g~vlqk~~~~~~~~~~~--~~-----~~---~-~~---~~~~~p~w~----~G~~l~~~g~~~~ 68 (335)
..|++.++.|+++++.-.+.-|+. ...+.... .. +. . .. +-.+++.+| .|++ ..+++.+.
T Consensus 151 ~~Gi~~~l~sg~~y~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~-~~ia~~~y 228 (290)
T TIGR00776 151 KKGILLLLMSTIGYLVYVVVAKAF-GVDGLSVLLPQAIGMVIGGIIFNLGHILAKPLKKYAILLNILPGLM-WGIGNFFY 228 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHc-CCCcceehhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH-HHHHHHHH
Confidence 569999999999998888777653 11111000 00 00 0 00 111122333 4444 46777788
Q ss_pred HHHHh-hcchhhhhchhhHHHHHHHHHHHHHhccccccchh----HHHHHHhhheeeEE
Q 019850 69 FVAYV-YAPAVLVTPLGALSIIISAVLAHFMLKERLQKMGI----LGCITCIVGSVVIV 122 (335)
Q Consensus 69 ~~al~-~~p~slv~Pl~~~~lv~~~~la~~~l~e~~~~~~~----~g~~li~~G~~l~~ 122 (335)
+.++. ..+.+...++...+.+.+.+.+.+++||+.+++++ +|.++++.|+.++.
T Consensus 229 ~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~ 287 (290)
T TIGR00776 229 LFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILG 287 (290)
T ss_pred HHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHh
Confidence 88888 89999999999999999999999999999999999 99999999987664
No 62
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=94.56 E-value=0.73 Score=44.02 Aligned_cols=79 Identities=13% Similarity=0.209 Sum_probs=60.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhc-chhhhhchhhHHHHHHHHHHHHHhccccccchhHHHHHHhhheeeEEEecCCCCC
Q 019850 52 PLWWAGMVTMIVGEVANFVAYVYA-PAVLVTPLGALSIIISAVLAHFMLKERLQKMGILGCITCIVGSVVIVIHAPQEHT 130 (335)
Q Consensus 52 p~w~~G~~l~~~g~~~~~~al~~~-p~slv~Pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~l~~~~~~~~~~ 130 (335)
+.|..=..++-.-++.|=.|+.|. |.-+=-=+=+.+++.|+.++..++|+|-+.+++..++++.+|+++...++.++..
T Consensus 65 k~Y~i~V~mFF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~ 144 (330)
T KOG1583|consen 65 KDYAITVAMFFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGR 144 (330)
T ss_pred hhhheehheeeeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchh
Confidence 445555555555667777777774 3333333567889999999999999999999999999999999888777766554
No 63
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=94.29 E-value=0.058 Score=51.32 Aligned_cols=117 Identities=15% Similarity=0.201 Sum_probs=76.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhh--hhccCCCcc-----CC----------ccccccc------------chhHH
Q 019850 5 ENSKGLILAVASSAFIGSSFILKKKGLK--RAGASGTRA-----GV----------GGYTYLL------------EPLWW 55 (335)
Q Consensus 5 ~~~iGvllAl~sa~~~a~g~vlqk~~~~--~~~~~~~~~-----~~----------~~~~~~~------------~p~w~ 55 (335)
....|.++++.|+++.+...++.||-.. +.+...... +. +...... ...|.
T Consensus 142 ~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (302)
T TIGR00817 142 FNWAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYT 221 (302)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHH
Confidence 3467999999999999999999888544 111100000 00 0000000 01122
Q ss_pred HHHHH----HHHHHHHHHHHHhhcchhhhhchhhHHHHHHHHHHHHHhccccccchhHHHHHHhhheeeE
Q 019850 56 AGMVT----MIVGEVANFVAYVYAPAVLVTPLGALSIIISAVLAHFMLKERLQKMGILGCITCIVGSVVI 121 (335)
Q Consensus 56 ~G~~l----~~~g~~~~~~al~~~p~slv~Pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~l~ 121 (335)
.+... +...+..++.++...+.+...-.+.+.-+++.+++..+++|+++..+++|..+++.|+.+.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~ 291 (302)
T TIGR00817 222 VSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLY 291 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHH
Confidence 12211 1112234456777888888888888899999999999999999999999999999997654
No 64
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=93.53 E-value=0.2 Score=39.94 Aligned_cols=70 Identities=19% Similarity=0.290 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHHhhhc
Q 019850 216 FLTVAAVCVVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGTIILH 292 (335)
Q Consensus 216 ~l~~~~~~~l~Q~~~ln~aL~~~~~~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~l~i~Gv~lLs 292 (335)
.+..+..+........+.++++.++..+.+..+ ..|+.+.+.|.++++|.. ++. ...|.++++.|++++.
T Consensus 56 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~pv~~~i~~~~~~~e~~--~~~----~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 56 LLFLGLLGTALAYLLYFYALKYISASIVSILQY-LSPVFAAILGWLFLGERP--SWR----QIIGIILIIIGVVLIS 125 (126)
T ss_pred hhHhhccceehHHHHHHHHHHhcchhHHHHHHH-HHHHHHHHHHHHHcCCCC--CHH----HHHHHHHHHHHHHHHH
Confidence 333344433445567888999999988888776 799999999999999954 344 4456667777777653
No 65
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=93.27 E-value=0.74 Score=43.61 Aligned_cols=62 Identities=32% Similarity=0.499 Sum_probs=52.2
Q ss_pred HHHHhhcchhhhhchhhHHHHHHHHHHHHHhccccccchhHHHHHHhhheeeEEEecCCCCC
Q 019850 69 FVAYVYAPAVLVTPLGALSIIISAVLAHFMLKERLQKMGILGCITCIVGSVVIVIHAPQEHT 130 (335)
Q Consensus 69 ~~al~~~p~slv~Pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~l~~~~~~~~~~ 130 (335)
.-|+...+..-++-+-+-+.+.-++++.++||-|-+..++.|++.|++|+++++...-+.++
T Consensus 96 V~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd 157 (336)
T KOG2766|consen 96 VKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGD 157 (336)
T ss_pred eeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeecccc
Confidence 45667777778888889999999999999999999999999999999999988765544443
No 66
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=91.66 E-value=0.97 Score=40.98 Aligned_cols=115 Identities=17% Similarity=0.170 Sum_probs=77.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccC------C--------------CccCC--cccc-ccc-chhHHHHHHH
Q 019850 5 ENSKGLILAVASSAFIGSSFILKKKGLKRAGAS------G--------------TRAGV--GGYT-YLL-EPLWWAGMVT 60 (335)
Q Consensus 5 ~~~iGvllAl~sa~~~a~g~vlqk~~~~~~~~~------~--------------~~~~~--~~~~-~~~-~p~w~~G~~l 60 (335)
+...|+.+.+.+.++.+...+.|+++.++.+.. + .+++. .... ... .+.+|.=.++
T Consensus 82 ~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (222)
T TIGR00803 82 NPVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVWIVGLL 161 (222)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHHHHHHHH
Confidence 445677777777777788888998875432110 0 00000 0011 111 2233333344
Q ss_pred HHHHHHHHHHHHhhcchhhhhchhhHHHHHHHHHHHHHhccccccchhHHHHHHhhhee
Q 019850 61 MIVGEVANFVAYVYAPAVLVTPLGALSIIISAVLAHFMLKERLQKMGILGCITCIVGSV 119 (335)
Q Consensus 61 ~~~g~~~~~~al~~~p~slv~Pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~ 119 (335)
...+..+-...+...+.....=...++.+++.+++.++++|+++...|.|+.++..|+.
T Consensus 162 ~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~ 220 (222)
T TIGR00803 162 NVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATF 220 (222)
T ss_pred HHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeE
Confidence 55666666667788888888899999999999999999999999999999999998864
No 67
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=91.30 E-value=14 Score=35.19 Aligned_cols=196 Identities=12% Similarity=0.087 Sum_probs=96.9
Q ss_pred HHHHHHHhhcchhhhhchhhHHHHHHHHHHHHHhccccccchhHHHHHHhhheeeEEEecCCCCCCCCHHHHHHHhcCch
Q 019850 66 VANFVAYVYAPAVLVTPLGALSIIISAVLAHFMLKERLQKMGILGCITCIVGSVVIVIHAPQEHTPNSVQEIWALATQPD 145 (335)
Q Consensus 66 ~~~~~al~~~p~slv~Pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~l~~~~~~~~~~~~t~~el~~~~~~~~ 145 (335)
.+-..++...|+.+...+--.+-+.-..++.. +.+|.+.+.+.+.|..++...++..++. +|-
T Consensus 86 l~FY~si~riPlGiAVAiEF~GPL~vA~~~sR------r~~d~vwvaLAvlGi~lL~p~~~~~~~l-----------Dp~ 148 (292)
T COG5006 86 LLFYLSIERIPLGIAVAIEFTGPLAVALLSSR------RLRDFVWVALAVLGIWLLLPLGQSVWSL-----------DPV 148 (292)
T ss_pred HHHHHHHHhccchhhhhhhhccHHHHHHHhcc------chhhHHHHHHHHHHHHhheeccCCcCcC-----------CHH
Confidence 34456777788877654444443333332222 4567677778888988776555444432 222
Q ss_pred hhHHHHHHHHHHHHHhhe-ecccCCC-chhHHHHHHHHhhhHHHHHHHHHHHHHHHHhhcCCCcchhhHHHHH-HHHHHH
Q 019850 146 FLIYVAATVSVVLALVLH-FEPRCGQ-TNILVYLGICSLMGSLTVVSIKAIGIAIKLTLDGISQIAYPQTWFF-LTVAAV 222 (335)
Q Consensus 146 fl~y~~~~~~v~~~l~~~-~~~r~~~-~~~~~~~~i~gllgg~svl~~K~v~~~l~~~~~g~~~f~~~~~y~~-l~~~~~ 222 (335)
-..|.....+.... |. ..+|-++ .+..--.+++-..++.-++ - ++. .+....+.+|..-.. +.+++.
T Consensus 149 Gv~~Al~AG~~Wa~--YIv~G~r~g~~~~g~~g~a~gm~vAaviv~-P--ig~-----~~ag~~l~~p~ll~laLgvavl 218 (292)
T COG5006 149 GVALALGAGACWAL--YIVLGQRAGRAEHGTAGVAVGMLVAALIVL-P--IGA-----AQAGPALFSPSLLPLALGVAVL 218 (292)
T ss_pred HHHHHHHHhHHHHH--HHHHcchhcccCCCchHHHHHHHHHHHHHh-h--hhh-----hhcchhhcChHHHHHHHHHHHH
Confidence 33343333332211 22 2333331 1110001111122221111 0 111 022334556655433 334444
Q ss_pred HHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHHhhhc
Q 019850 223 CVVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGTIILH 292 (335)
Q Consensus 223 ~~l~Q~~~ln~aL~~~~~~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~l~i~Gv~lLs 292 (335)
+...--..-.-+|++-++.. .-++.+.+|..+.+.|.++++|.. ++.||....+= +....|+.+=.
T Consensus 219 SSalPYsLEmiAL~rlp~~~-F~~LlSLePa~aAl~G~i~L~e~l--s~~qwlaI~~V-iaAsaG~~lt~ 284 (292)
T COG5006 219 SSALPYSLEMIALRRLPART-FGTLLSLEPALAALSGLIFLGETL--TLIQWLAIAAV-IAASAGSTLTA 284 (292)
T ss_pred hcccchHHHHHHHhhCChhH-HHHHHHhhHHHHHHHHHHHhcCCC--CHHHHHHHHHH-HHHHhcccccc
Confidence 44433334445888877654 456678999999999999999954 56777655432 23444444433
No 68
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=89.98 E-value=12 Score=34.26 Aligned_cols=59 Identities=24% Similarity=0.222 Sum_probs=53.7
Q ss_pred HHHHHHHhhcchhhhhchhhHHHHHHHHHHHHHhccccccchhHHHHHHhhheeeEEEe
Q 019850 66 VANFVAYVYAPAVLVTPLGALSIIISAVLAHFMLKERLQKMGILGCITCIVGSVVIVIH 124 (335)
Q Consensus 66 ~~~~~al~~~p~slv~Pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~l~~~~ 124 (335)
-....||...+.+.+..+.+..-.|.-+++...+|+|+...+++++++.+.|++++...
T Consensus 68 Y~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~ 126 (290)
T KOG4314|consen 68 YLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYA 126 (290)
T ss_pred cHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEec
Confidence 45677899999999999999999999999999999999999999999999998888653
No 69
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=89.89 E-value=1.2 Score=36.94 Aligned_cols=74 Identities=11% Similarity=0.159 Sum_probs=52.2
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHH
Q 019850 207 QIAYPQTWFFLTVAAVCVVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLS 286 (335)
Q Consensus 207 ~f~~~~~y~~l~~~~~~~l~Q~~~ln~aL~~~~~~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~l~i~ 286 (335)
.+++|...+-+..-..+.+ ...-.|.+.|.+..+|+.+..--+++++.|..+.+|...- . -.+|..++++
T Consensus 38 Ll~n~~y~ipf~lNq~GSv----~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~--~----~~~G~~Li~~ 107 (113)
T PF10639_consen 38 LLLNPKYIIPFLLNQSGSV----LFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISR--R----TWLGMALILA 107 (113)
T ss_pred HHHhHHHHHHHHHHHHHHH----HHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccch--h----HHHHHHHHHc
Confidence 3556665554444444444 4556788899999999999888888999997777765332 2 3578888888
Q ss_pred HHhh
Q 019850 287 GTII 290 (335)
Q Consensus 287 Gv~l 290 (335)
|+.+
T Consensus 108 Gv~L 111 (113)
T PF10639_consen 108 GVAL 111 (113)
T ss_pred Ceee
Confidence 8765
No 70
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=89.36 E-value=0.48 Score=44.52 Aligned_cols=221 Identities=14% Similarity=0.183 Sum_probs=126.9
Q ss_pred cccchhHHHHHHH---HHHHHHHHHHHHhhcchhhhhchh-hHHHHHHHHHHHHHhccccccchhH----HHHHHhhhee
Q 019850 48 YLLEPLWWAGMVT---MIVGEVANFVAYVYAPAVLVTPLG-ALSIIISAVLAHFMLKERLQKMGIL----GCITCIVGSV 119 (335)
Q Consensus 48 ~~~~p~w~~G~~l---~~~g~~~~~~al~~~p~slv~Pl~-~~~lv~~~~la~~~l~e~~~~~~~~----g~~li~~G~~ 119 (335)
.+.-..|..|++. -.+|...|+-|...-..|.-.|+. +.+++-+.+++.+.+||=-+..+.+ +.++++.|..
T Consensus 53 ~~T~~~~iv~~isG~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~ 132 (288)
T COG4975 53 ELTLTIFIVGFISGAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIY 132 (288)
T ss_pred ccchhhHHHHHHhhhHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhhe
Confidence 3444567777755 346788899999999999999996 5789999999999999998887753 7788899988
Q ss_pred eEEEecCCCCCCCCHHHHHHHhcCchhhHHHHHHHHH--HHHHhheecccCCCchhHHHHHHHHhhhHHHHHHHHHHHHH
Q 019850 120 VIVIHAPQEHTPNSVQEIWALATQPDFLIYVAATVSV--VLALVLHFEPRCGQTNILVYLGICSLMGSLTVVSIKAIGIA 197 (335)
Q Consensus 120 l~~~~~~~~~~~~t~~el~~~~~~~~fl~y~~~~~~v--~~~l~~~~~~r~~~~~~~~~~~i~gllgg~svl~~K~v~~~ 197 (335)
+-....+.+.+..+++.+.+-. ..+.+ .-...|.+.+|.-. +.+.++++-++++-.
T Consensus 133 lTs~~~~~nk~~~~~~n~kkgi----------~~L~iSt~GYv~yvvl~~~f~------------v~g~saiLPqAiGMv 190 (288)
T COG4975 133 LTSKQDRNNKEEENPSNLKKGI----------VILLISTLGYVGYVVLFQLFD------------VDGLSAILPQAIGMV 190 (288)
T ss_pred EeeeeccccccccChHhhhhhe----------eeeeeeccceeeeEeeecccc------------ccchhhhhHHHHHHH
Confidence 8776666555545555554311 11000 00111222222110 223333333332221
Q ss_pred HH---HhhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHhhcccCCCChhHH
Q 019850 198 IK---LTLDGISQIAYPQTWFFLTVAAVCVVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGI 274 (335)
Q Consensus 198 l~---~~~~g~~~f~~~~~y~~l~~~~~~~l~Q~~~ln~aL~~~~~~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~ 274 (335)
+- ....+.+-..+-.+|.-+..++.=+..-+.++-.+=+.+-++ ....-|..- +.+.++|..+++|.. +..++
T Consensus 191 ~~ali~~~~~~~~~~~K~t~~nii~G~~Wa~GNl~ml~a~~~~GvAt-~FSlSQlgV-iisTiGGIl~L~ekK--tkkEm 266 (288)
T COG4975 191 IGALILGFFKMEKRFNKYTWLNIIPGLIWAIGNLFMLLAAQKVGVAT-SFSLSQLGV-IISTIGGILFLGEKK--TKKEM 266 (288)
T ss_pred HHHHHHhhcccccchHHHHHHHHhhHHHHHhhHHHHHHhhhhhceee-eeeHhhhee-eeeecceEEEEeccC--chhhh
Confidence 11 111122344455566655554433222222222111222222 111222221 235668999999965 47999
Q ss_pred HHHHHHHHHHHHHHhhhccc
Q 019850 275 ASEICGFITVLSGTIILHAT 294 (335)
Q Consensus 275 ~~~~~G~~l~i~Gv~lLs~~ 294 (335)
.....|.++++.|.++|+--
T Consensus 267 ~~v~iGiilivvgai~lg~~ 286 (288)
T COG4975 267 VYVIIGIILIVVGAILLGIA 286 (288)
T ss_pred hhhhhhHHHHHHHhhhhhee
Confidence 99999999999999998654
No 71
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=89.33 E-value=0.77 Score=44.69 Aligned_cols=72 Identities=19% Similarity=0.334 Sum_probs=59.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhcchhhhhchhhHHHHHHHHHHHHHhccccccchhHHHHHHhhheeeEEE
Q 019850 51 EPLWWAGMVTMIVGEVANFVAYVYAPAVLVTPLGALSIIISAVLAHFMLKERLQKMGILGCITCIVGSVVIVI 123 (335)
Q Consensus 51 ~p~w~~G~~l~~~g~~~~~~al~~~p~slv~Pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~l~~~ 123 (335)
++.-..|.. ..+|-++.-.++..-|.+..|-+-++..++++++++++.+|+.++..+...+.++.|+.+-..
T Consensus 84 ~~llpl~~~-~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~ 155 (316)
T KOG1441|consen 84 RTLLPLGLV-FCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASV 155 (316)
T ss_pred HHHHHHHHH-HHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeee
Confidence 333334433 346777888899999999999999999999999999999999999999998888888766544
No 72
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=88.56 E-value=0.76 Score=37.69 Aligned_cols=77 Identities=18% Similarity=0.298 Sum_probs=64.6
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHhhcchhhhhchh-hHHHHHHHHHHHHHhcccccc-chhHHHHHHhhheeeEE
Q 019850 45 GYTYLLEPLWWAGMVTMIVGEVANFVAYVYAPAVLVTPLG-ALSIIISAVLAHFMLKERLQK-MGILGCITCIVGSVVIV 122 (335)
Q Consensus 45 ~~~~~~~p~w~~G~~l~~~g~~~~~~al~~~p~slv~Pl~-~~~lv~~~~la~~~l~e~~~~-~~~~g~~li~~G~~l~~ 122 (335)
.+.++.|+..++=+++.--|+.+.+.-|+-+|.++..|+. ++++.|+.+++..+ +|+... +-..|+.+++.|+.+.+
T Consensus 46 ~~tl~l~w~Y~iPFllNqcgSaly~~tLa~a~islavpv~nsltfafta~~G~~L-GE~~~g~~a~lGt~liv~Gi~Lci 124 (125)
T KOG4831|consen 46 MKTLFLNWEYLIPFLLNQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKAL-GEETQGGLALLGTSLIVFGIWLCI 124 (125)
T ss_pred HHHHHHhHHHHHHHHHHHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHh-ccccccceeehhhhHHhhhhhhee
Confidence 4677888999999999989999999999999999999985 67899999998775 666554 45779999999976643
No 73
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=88.06 E-value=14 Score=36.48 Aligned_cols=225 Identities=14% Similarity=0.213 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHhhcchhhhhch-hhHHHHHHHHHHHHHhcc-------ccccchhHHHHHHhhheeeEEEecCCCCCCC-
Q 019850 62 IVGEVANFVAYVYAPAVLVTPL-GALSIIISAVLAHFMLKE-------RLQKMGILGCITCIVGSVVIVIHAPQEHTPN- 132 (335)
Q Consensus 62 ~~g~~~~~~al~~~p~slv~Pl-~~~~lv~~~~la~~~l~e-------~~~~~~~~g~~li~~G~~l~~~~~~~~~~~~- 132 (335)
.+|.+..-.+.++.-.|+-+.+ ..++.++..++-+.+.++ +-.+...+|++++.+|++++...+...+++.
T Consensus 84 GIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~Ke~~~~ 163 (344)
T PF06379_consen 84 GIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSMKEKELG 163 (344)
T ss_pred hcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHhhhhhhc
Confidence 3444444555566666666554 244555555555555432 2233456799999999998876654333222
Q ss_pred -CHHHHHHHhcCchhhHHHHHHHHHHHHHhhee---cc------cCCCchhHHHHHHHH----hhhHHHHHHHHHHHHHH
Q 019850 133 -SVQEIWALATQPDFLIYVAATVSVVLALVLHF---EP------RCGQTNILVYLGICS----LMGSLTVVSIKAIGIAI 198 (335)
Q Consensus 133 -t~~el~~~~~~~~fl~y~~~~~~v~~~l~~~~---~~------r~~~~~~~~~~~i~g----llgg~svl~~K~v~~~l 198 (335)
+.+|. -+ ..-+.-+++..+.....-+-. .| ..|.. ..|...-+ +.||+..=+.=++-...
T Consensus 164 ~~~~ef--n~--~kGl~iAv~sGv~Sa~fn~g~~ag~pi~~~a~a~G~~--~l~~~l~~~vvv~~GGf~tN~~yc~~~l~ 237 (344)
T PF06379_consen 164 EEAKEF--NF--KKGLIIAVLSGVMSACFNFGLDAGKPIHEAAVAAGVN--PLYANLPVYVVVLWGGFITNLIYCLILLA 237 (344)
T ss_pred cchhhh--hh--hhhHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHcCCC--cHHHhCchhhhhhhhHHHHHHHHHHHHHh
Confidence 22331 11 111222222222222211100 11 11211 12222211 34554443333332222
Q ss_pred H-Hhhc--CCCcchhh---HHHHHHHHHHHHHHHHHHHHHHhhcc-cc--ccccchhHHHHHHHHHHHHHHHhhcccCCC
Q 019850 199 K-LTLD--GISQIAYP---QTWFFLTVAAVCVVTQLNYLNKALDT-FN--AAIVSPVYYVMFTTLTIIASAIMFKDWSGQ 269 (335)
Q Consensus 199 ~-~~~~--g~~~f~~~---~~y~~l~~~~~~~l~Q~~~ln~aL~~-~~--~~~v~P~~~v~~~~~~i~~G~i~f~E~~~~ 269 (335)
+ .+.+ +|.....+ .-|++...+-+.=..|..+...+-.+ ++ ....-++...+..+++-+.|. .++||.+.
T Consensus 238 ~~k~~s~~~d~~~~~~~~~~N~~~~aLaG~lWy~qfffYg~G~s~lg~~~~~~sW~i~ma~~vl~snvwGl-~lkEWKg~ 316 (344)
T PF06379_consen 238 KNKNWSWKGDYSVAKPPLLKNYLFCALAGVLWYSQFFFYGMGESKLGASGPFSSWAIHMALIVLFSNVWGL-ILKEWKGA 316 (344)
T ss_pred hcCCCccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHH-HHHHhccC
Confidence 2 1111 12112222 23666666666778899888876644 32 256778888888888888775 67999999
Q ss_pred ChhHHHHHHHHHHHHHHHHhhhcc
Q 019850 270 DVSGIASEICGFITVLSGTIILHA 293 (335)
Q Consensus 270 ~~~~~~~~~~G~~l~i~Gv~lLs~ 293 (335)
+......+.+|+++++.+++++.-
T Consensus 317 s~kt~~vl~~G~~vlI~s~~ivG~ 340 (344)
T PF06379_consen 317 SKKTIRVLVLGIAVLILSVVIVGY 340 (344)
T ss_pred CcccHHHHHHHHHHHHHHHHHHhc
Confidence 988888899999999998887753
No 74
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=87.36 E-value=3.7 Score=33.52 Aligned_cols=46 Identities=22% Similarity=0.406 Sum_probs=37.2
Q ss_pred hchhhHHHHHHHHHHHHHhccccccchhHHHHHHhhheeeEEEecCC
Q 019850 81 TPLGALSIIISAVLAHFMLKERLQKMGILGCITCIVGSVVIVIHAPQ 127 (335)
Q Consensus 81 ~Pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~l~~~~~~~ 127 (335)
+.-+++-++.++.-....-|.|+++.||+|...|..|+.++ .++|.
T Consensus 62 AAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vi-l~~pR 107 (109)
T COG1742 62 AAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVI-LFGPR 107 (109)
T ss_pred HHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeee-EeCCC
Confidence 44567777788888899999999999999999999995544 45654
No 75
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=87.35 E-value=19 Score=33.93 Aligned_cols=191 Identities=13% Similarity=0.169 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHHHhhcchhhhhchhhHH----HHHHHHHHHHHhccccccchhHHHHHHhhheeeEEEecCCC----CC
Q 019850 59 VTMIVGEVANFVAYVYAPAVLVTPLGALS----IIISAVLAHFMLKERLQKMGILGCITCIVGSVVIVIHAPQE----HT 130 (335)
Q Consensus 59 ~l~~~g~~~~~~al~~~p~slv~Pl~~~~----lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~l~~~~~~~~----~~ 130 (335)
..+.+..+..=-|+.+.|. |-.+++ -+=.++++..+.|.+-++++..-+++|++|++++..--.+- ++
T Consensus 93 ~sYLlAMVssN~Alq~vpY----PTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g~e~~ 168 (337)
T KOG1580|consen 93 ASYLLAMVSSNQALQYVPY----PTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGGAEDK 168 (337)
T ss_pred HHHHHHHHhccchhcccCC----cHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccccCCCccc
Confidence 3454555555555666553 322222 12235678888899999999999999999999886542221 12
Q ss_pred CCCHHHHHHHhcCchhhHHHHHHHHHHHHH---hh----ee--cccCCCchhHHHHHH-HHhhhHHHHHHHHHHHHHHHH
Q 019850 131 PNSVQEIWALATQPDFLIYVAATVSVVLAL---VL----HF--EPRCGQTNILVYLGI-CSLMGSLTVVSIKAIGIAIKL 200 (335)
Q Consensus 131 ~~t~~el~~~~~~~~fl~y~~~~~~v~~~l---~~----~~--~~r~~~~~~~~~~~i-~gllgg~svl~~K~v~~~l~~ 200 (335)
+.-..|+.. +..+.+ -. ++ +-+.+..++..|.-. +.+.-|...+++-..=+.+.
T Consensus 169 t~g~GElLL---------------~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~y- 232 (337)
T KOG1580|consen 169 TFGFGELLL---------------ILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFY- 232 (337)
T ss_pred ccchHHHHH---------------HHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHHHHH-
Confidence 222233211 111111 00 01 112223344444332 33333333333221111111
Q ss_pred hhcCCCcchhhHHHH-HHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHhhcccCCCChhHHHHHH
Q 019850 201 TLDGISQIAYPQTWF-FLTVAAVCVVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEI 278 (335)
Q Consensus 201 ~~~g~~~f~~~~~y~-~l~~~~~~~l~Q~~~ln~aL~~~~~~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~ 278 (335)
-.-.||..|- +...++.+++.| .|.=+....|.+.. ..+.+..--++++++++++|+. ..++.||++-.
T Consensus 233 -----F~~RhP~~~~~l~l~ai~s~LGQ-~fIF~tv~~FgPLt-CSivTTTRKfFTil~SVllf~n--pls~rQwlgtv 302 (337)
T KOG1580|consen 233 -----FVQRHPYVFWDLTLLAIASCLGQ-WFIFKTVEEFGPLT-CSIVTTTRKFFTILISVLLFNN--PLSGRQWLGTV 302 (337)
T ss_pred -----HHHhccHHHHHHHHHHHHHHhhh-HHHHHHHHHhCCee-EEEEeehHHHHHHHHHHHHhcC--cCcHHHHHHHH
Confidence 0124666544 445555556666 34444455554432 3344556677889999999998 45677775443
No 76
>PRK02237 hypothetical protein; Provisional
Probab=85.07 E-value=3.7 Score=33.72 Aligned_cols=46 Identities=24% Similarity=0.390 Sum_probs=37.3
Q ss_pred hchhhHHHHHHHHHHHHHhccccccchhHHHHHHhhheeeEEEecCC
Q 019850 81 TPLGALSIIISAVLAHFMLKERLQKMGILGCITCIVGSVVIVIHAPQ 127 (335)
Q Consensus 81 ~Pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~l~~~~~~~ 127 (335)
+.-+++-++.+++-....-|+|+++.|++|..++.+|+.++. ++|.
T Consensus 63 AAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~-~~pR 108 (109)
T PRK02237 63 AAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIM-YAPR 108 (109)
T ss_pred HHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHhe-ecCC
Confidence 344667777788889999999999999999999999976654 5554
No 77
>PRK13499 rhamnose-proton symporter; Provisional
Probab=83.42 E-value=6.2 Score=38.97 Aligned_cols=61 Identities=10% Similarity=0.129 Sum_probs=49.8
Q ss_pred HhhccccccccchhHHHHHHHHHHHHHHHhhcccCCC-ChhHHHHHHHHHHHHHHHHhhhcc
Q 019850 233 KALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQ-DVSGIASEICGFITVLSGTIILHA 293 (335)
Q Consensus 233 ~aL~~~~~~~v~P~~~v~~~~~~i~~G~i~f~E~~~~-~~~~~~~~~~G~~l~i~Gv~lLs~ 293 (335)
++.|.--.+.-.|+..-.-.+.+.+.+.++++||... +..+......|++++++|+.+-++
T Consensus 92 ~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~ 153 (345)
T PRK13499 92 LTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGR 153 (345)
T ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 4556656667799999999999999999999999722 335556688999999999999988
No 78
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=79.36 E-value=4.1 Score=39.92 Aligned_cols=51 Identities=16% Similarity=0.266 Sum_probs=42.1
Q ss_pred HHHhhcchhhhhchhhHHHHHHHHHHHHHhccccccchhHHHHHHhhheee
Q 019850 70 VAYVYAPAVLVTPLGALSIIISAVLAHFMLKERLQKMGILGCITCIVGSVV 120 (335)
Q Consensus 70 ~al~~~p~slv~Pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~l 120 (335)
..+...+..-..=.+.+.-++..+++..++||+++..+++|.++++.|+.+
T Consensus 295 ~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~l 345 (350)
T PTZ00343 295 YCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALL 345 (350)
T ss_pred HHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHH
Confidence 355556666666667777888999999999999999999999999999764
No 79
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=77.41 E-value=13 Score=35.40 Aligned_cols=115 Identities=17% Similarity=0.216 Sum_probs=72.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCc---------------------cCC---cccccccchhHHHHHHH-
Q 019850 6 NSKGLILAVASSAFIGSSFILKKKGLKRAGASGTR---------------------AGV---GGYTYLLEPLWWAGMVT- 60 (335)
Q Consensus 6 ~~iGvllAl~sa~~~a~g~vlqk~~~~~~~~~~~~---------------------~~~---~~~~~~~~p~w~~G~~l- 60 (335)
+..|+++.+++-++.+.-.+.|++-.++-+.+..+ .++ ...-..+.|..+.-+++
T Consensus 152 ~~~G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~ 231 (303)
T PF08449_consen 152 SALGIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLF 231 (303)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHH
Confidence 34599999999999999999999876544332100 000 00111233444333333
Q ss_pred HHHHHHHHHHHH---hhcchhhhhchhhHHHHHHHHHHHHHhccccccchhHHHHHHhhheee
Q 019850 61 MIVGEVANFVAY---VYAPAVLVTPLGALSIIISAVLAHFMLKERLQKMGILGCITCIVGSVV 120 (335)
Q Consensus 61 ~~~g~~~~~~al---~~~p~slv~Pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~l 120 (335)
...+.+++.... ..-......-+..+--.++.+++.++.+++++..+|.|+.++..|..+
T Consensus 232 s~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~ 294 (303)
T PF08449_consen 232 SLTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFL 294 (303)
T ss_pred HHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHH
Confidence 344455443332 222233344556666778899999999999999999999999999654
No 80
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=76.56 E-value=2 Score=40.44 Aligned_cols=62 Identities=16% Similarity=0.276 Sum_probs=50.5
Q ss_pred HhhccccccccchhHHHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHHhhhccccC
Q 019850 233 KALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGTIILHATRE 296 (335)
Q Consensus 233 ~aL~~~~~~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~l~i~Gv~lLs~~~~ 296 (335)
+|.+.-..+...|+-+-..-+.+.+.|++.|+||.+. .+.+.=..++++++.|+++=+.+++
T Consensus 78 ka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~--~~~IlG~iAliliviG~~lTs~~~~ 139 (288)
T COG4975 78 KAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTP--TQIILGFIALILIVIGIYLTSKQDR 139 (288)
T ss_pred hheeeeeeeccccccchhhHhhceeeeEEEEeccCcc--hhHHHHHHHHHHHHHhheEeeeecc
Confidence 4777777788899999999999999999999999864 6777777778889999887665543
No 81
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=73.35 E-value=4.1 Score=33.36 Aligned_cols=45 Identities=24% Similarity=0.494 Sum_probs=36.9
Q ss_pred chhhHHHHHHHHHHHHHhccccccchhHHHHHHhhheeeEEEecCC
Q 019850 82 PLGALSIIISAVLAHFMLKERLQKMGILGCITCIVGSVVIVIHAPQ 127 (335)
Q Consensus 82 Pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~l~~~~~~~ 127 (335)
.-+++-++.+++-...+-|+|+++.|++|..+|.+|+.++. ++|.
T Consensus 62 AYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~-~~PR 106 (107)
T PF02694_consen 62 AYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIIL-FAPR 106 (107)
T ss_pred HhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheE-ecCC
Confidence 34667777888889999999999999999999999976654 4553
No 82
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=72.74 E-value=33 Score=34.68 Aligned_cols=75 Identities=13% Similarity=0.299 Sum_probs=41.1
Q ss_pred hhchhhHHHHHHHHHHHHHhccccccchhHHHHHHhhheeeEEEecC---C-----C-----CCCCCHHHHHHHhcCchh
Q 019850 80 VTPLGALSIIISAVLAHFMLKERLQKMGILGCITCIVGSVVIVIHAP---Q-----E-----HTPNSVQEIWALATQPDF 146 (335)
Q Consensus 80 v~Pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~l~~~~~~---~-----~-----~~~~t~~el~~~~~~~~f 146 (335)
+.--|+++......++=++.....+..-|++....++=..++....| + + .+..+.+|+.++++.+.|
T Consensus 143 ~R~wGSig~ai~s~~~G~L~~i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~k~~~f 222 (412)
T PF01306_consen 143 ARMWGSIGFAIASLLAGILFNINPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADALGAKKDKVSLKDVLSLFKMRNF 222 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTTSSS------HHHHHHHTTSHHH
T ss_pred HHHHhhHHHHHHHHHhheeeeeCccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhcccccCCCCCcHHHHHHHhcchhH
Confidence 34467888888888777777766666667655432222222211221 1 1 112345677899999988
Q ss_pred hHHHHHHH
Q 019850 147 LIYVAATV 154 (335)
Q Consensus 147 l~y~~~~~ 154 (335)
..+.+.+.
T Consensus 223 w~~~l~v~ 230 (412)
T PF01306_consen 223 WFFVLFVI 230 (412)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76655433
No 83
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=71.33 E-value=26 Score=33.76 Aligned_cols=61 Identities=15% Similarity=0.249 Sum_probs=42.7
Q ss_pred HhhccccccccchhHHHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHHhhhccccCCcCC
Q 019850 233 KALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGTIILHATREHEQT 300 (335)
Q Consensus 233 ~aL~~~~~~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~l~i~Gv~lLs~~~~~~~~ 300 (335)
.|+..-|++.+.|+-- .--+.+.+.+-.+++|..+. .+ ..|.++++.|+.++.-..+++++
T Consensus 69 ~Al~~ap~slv~Plg~-~~lv~~~~~a~~~l~e~~~~--~~----~~G~~l~i~G~~liv~~~~~~~~ 129 (300)
T PF05653_consen 69 VALGFAPASLVAPLGA-LSLVFNAVLARFFLGEKLTR--RD----IVGCALIILGSVLIVIFAPKEEP 129 (300)
T ss_pred HHHHhhhHHHHHHHHh-hhhhhHHHHhHHHhcccchH--hH----HhhHHHHHhhheeeEEeCCCCCC
Confidence 4777788889999864 44556777788889996553 32 46778888898887655544433
No 84
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=70.12 E-value=59 Score=29.19 Aligned_cols=56 Identities=14% Similarity=0.074 Sum_probs=37.4
Q ss_pred HHHHHHHhhccccccccchhHHHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHHh
Q 019850 227 QLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGTI 289 (335)
Q Consensus 227 Q~~~ln~aL~~~~~~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~l~i~Gv~ 289 (335)
|..+.+..+++.|++ ..-.......+.+.+.+..+|+|. .++.+ ..|..+++.|++
T Consensus 165 ~~~~v~~vlk~~~~~-~~~~~~~~~~~~s~lls~~~f~~~--ls~~~----~~g~~lV~~~~~ 220 (222)
T TIGR00803 165 GGLCIGGVVRYADNT-TKSFVTALSIILSTLASVRLFDAK--ISSTF----YLGAILVFLATF 220 (222)
T ss_pred cCceeeehhHHhHHH-HHHHHHHHHHHHHHHHHHHHhcCC--ccHHH----HHHHHHHHeeeE
Confidence 444577778877776 455666788888888999999984 33443 345555555543
No 85
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=66.34 E-value=17 Score=36.37 Aligned_cols=120 Identities=18% Similarity=0.226 Sum_probs=82.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhhhhc-cCCCcc-----------------------CCcccccccc----hhHH
Q 019850 4 SENSKGLILAVASSAFIGSSFILKKKGLKRAG-ASGTRA-----------------------GVGGYTYLLE----PLWW 55 (335)
Q Consensus 4 ~~~~iGvllAl~sa~~~a~g~vlqk~~~~~~~-~~~~~~-----------------------~~~~~~~~~~----p~w~ 55 (335)
+...+|.++|+.||+++|+=.++-||-..+.. +-+.+. +.+...+-.+ -.-.
T Consensus 243 ~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~ 322 (416)
T KOG2765|consen 243 SRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVF 322 (416)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeH
Confidence 34589999999999999999999888654442 111000 0000011111 1123
Q ss_pred HHHHHHHHHHHHHHHHHhhcchhhhhchhhHHHHHHHHHHHHHhccccccchhHHHHHHhhheeeEEE
Q 019850 56 AGMVTMIVGEVANFVAYVYAPAVLVTPLGALSIIISAVLAHFMLKERLQKMGILGCITCIVGSVVIVI 123 (335)
Q Consensus 56 ~G~~l~~~g~~~~~~al~~~p~slv~Pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~l~~~ 123 (335)
.|++.-++.--+|..|...-+..++.--.++++..+++.=..+-+.+++...++|.+.|.+|-+++-.
T Consensus 323 ~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~ 390 (416)
T KOG2765|consen 323 NNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNI 390 (416)
T ss_pred hhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheec
Confidence 45555566667888888888777787778888888888777777999999999999999999666543
No 86
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=66.16 E-value=7.5 Score=32.70 Aligned_cols=39 Identities=8% Similarity=0.071 Sum_probs=29.9
Q ss_pred HHHHhhcccCCCChhHHHHHHHHHHHHHHHHhhhccccC
Q 019850 258 ASAIMFKDWSGQDVSGIASEICGFITVLSGTIILHATRE 296 (335)
Q Consensus 258 ~G~i~f~E~~~~~~~~~~~~~~G~~l~i~Gv~lLs~~~~ 296 (335)
--+++|=-..+-++|++.++++.++++++|+++|.|+-.
T Consensus 21 EemlW~fR~ED~tpWNysiL~Ls~vvlvi~~~LLgrsi~ 59 (125)
T PF15048_consen 21 EEMLWFFRVEDATPWNYSILALSFVVLVISFFLLGRSIQ 59 (125)
T ss_pred HHHHHheecCCCCCcchHHHHHHHHHHHHHHHHHHHHhH
Confidence 344533334456799999999999999999999988733
No 87
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=64.22 E-value=69 Score=29.83 Aligned_cols=109 Identities=20% Similarity=0.205 Sum_probs=66.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccC--------------------CCccCC--cccccccc--hhHHHHHHH
Q 019850 5 ENSKGLILAVASSAFIGSSFILKKKGLKRAGAS--------------------GTRAGV--GGYTYLLE--PLWWAGMVT 60 (335)
Q Consensus 5 ~~~iGvllAl~sa~~~a~g~vlqk~~~~~~~~~--------------------~~~~~~--~~~~~~~~--p~w~~G~~l 60 (335)
+..+|+++.++++++.+.+.+...|-.++.+.. -.+++. .....+.. ++-|.=+++
T Consensus 111 ~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f~G~~~~~~~~i~~ 190 (244)
T PF04142_consen 111 NPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISESGFFHGYSWWVWIVIFL 190 (244)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCchhhcchHHHHHHHH
Confidence 457899999999999999998887766543210 000000 00112222 222222233
Q ss_pred HHHHHHHHHHHHhhcchhhhhchhhHHHHHHHHHHHHHhccccccchhHHHHH
Q 019850 61 MIVGEVANFVAYVYAPAVLVTPLGALSIIISAVLAHFMLKERLQKMGILGCIT 113 (335)
Q Consensus 61 ~~~g~~~~~~al~~~p~slv~Pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~l 113 (335)
..+|-++-...+.+++-.+=.=-.+.+++.+.+++..+++.+++..-.+|+.+
T Consensus 191 ~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~ 243 (244)
T PF04142_consen 191 QAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAAL 243 (244)
T ss_pred HHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheec
Confidence 44444555555666665544445678888999999999999999887777654
No 88
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.99 E-value=6.6 Score=31.83 Aligned_cols=106 Identities=16% Similarity=0.200 Sum_probs=59.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCccCCcccccccchhHHHHHHHHHHHHHHH---HHHHhhcchhh
Q 019850 3 LSENSKGLILAVASSAFIGSSFILKKKGLKRAGASGTRAGVGGYTYLLEPLWWAGMVTMIVGEVAN---FVAYVYAPAVL 79 (335)
Q Consensus 3 ~~~~~iGvllAl~sa~~~a~g~vlqk~~~~~~~~~~~~~~~~~~~~~~~p~w~~G~~l~~~g~~~~---~~al~~~p~sl 79 (335)
++.....++|-+.|+.++..+- +|+.+...+ + .-..---.|-+.++=+.+..-.| -..++-+.+-.
T Consensus 5 ~~~~l~~vlLL~~SNvFMTFAW----YghLk~~~~---p----l~~~i~~SWGIA~fEY~LqvPaNRiG~~v~s~~QLK~ 73 (116)
T COG3169 5 MSVYLYPVLLLIGSNVFMTFAW----YGHLKFTNK---P----LVIVILASWGIAFFEYLLQVPANRIGHQVYSAAQLKT 73 (116)
T ss_pred CchHHHHHHHHHhhHHHHHHHH----HHHHhccCC---c----hhHHHHHHhhHHHHHHHHhCccchhhhhhccHHHHHH
Confidence 3556678888888888876552 454432211 0 01111123333332232211111 12233333344
Q ss_pred hhchhhHHHHHHHHHHHHHhccccccchhHHHHHHhhheeeE
Q 019850 80 VTPLGALSIIISAVLAHFMLKERLQKMGILGCITCIVGSVVI 121 (335)
Q Consensus 80 v~Pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~l~ 121 (335)
.|- ++++..=.++|.+++||+++...+.|..++..|+.++
T Consensus 74 mQE--VItL~iFv~Fsvfyl~epl~~~~l~a~~~i~gav~fi 113 (116)
T COG3169 74 MQE--VITLAIFVPFSVFYLKEPLRWNYLWAFLLILGAVYFI 113 (116)
T ss_pred HHH--HHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHh
Confidence 443 3566667789999999999999999998888776543
No 89
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=63.90 E-value=60 Score=27.53 Aligned_cols=39 Identities=28% Similarity=0.335 Sum_probs=29.6
Q ss_pred hchhhHHHHHHHHHHHH----HhccccccchhHHHHHHhhhee
Q 019850 81 TPLGALSIIISAVLAHF----MLKERLQKMGILGCITCIVGSV 119 (335)
Q Consensus 81 ~Pl~~~~lv~~~~la~~----~l~e~~~~~~~~g~~li~~G~~ 119 (335)
.-...-+++.++++-++ .-|+|++.++..|+.++++|+.
T Consensus 95 ~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~ 137 (138)
T PF04657_consen 95 ILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVI 137 (138)
T ss_pred HHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHh
Confidence 33444556666777775 4679999999999999999965
No 90
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=61.90 E-value=29 Score=32.83 Aligned_cols=49 Identities=16% Similarity=0.152 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHH-----hhcccCCCChhHHHHHHHHHHHHHHHHhhhccccCCc
Q 019850 249 VMFTTLTIIASAI-----MFKDWSGQDVSGIASEICGFITVLSGTIILHATREHE 298 (335)
Q Consensus 249 v~~~~~~i~~G~i-----~f~E~~~~~~~~~~~~~~G~~l~i~Gv~lLs~~~~~~ 298 (335)
..|..++++.|.. +|++..+. +..-.+=.+|++++++|.++.+.-|+++
T Consensus 86 liW~s~n~l~Gw~~grfGlFg~~~~~-~~~~~Ln~~G~~l~~~~~~~f~fik~~~ 139 (254)
T PF07857_consen 86 LIWGSVNCLTGWASGRFGLFGLDPQV-PSSPWLNYIGVALVLVSGIIFSFIKSEE 139 (254)
T ss_pred HHHHHHHHHHHHHHhhceeccccccc-cchhHHHHHHHHHHHHHHHheeeecCCC
Confidence 4677777777776 57765553 5566666778778888887776544444
No 91
>PF08173 YbgT_YccB: Membrane bound YbgT-like protein; InterPro: IPR012994 This family contains a set of membrane proteins, typically 33 amino acids long. The family has no known function, but the protein is found in the operon CydAB in Escherichia coli. Members have a consensus motif (MWYFXW), which is rich in aromatic residues. The protein forms a single membrane-spanning helix. This family seems to be restricted to proteobacteria [].
Probab=61.83 E-value=11 Score=23.55 Aligned_cols=23 Identities=22% Similarity=0.028 Sum_probs=20.6
Q ss_pred CCCchhHHHHHHHHHHHHHHHHH
Q 019850 1 MGLSENSKGLILAVASSAFIGSS 23 (335)
Q Consensus 1 ~~~~~~~iGvllAl~sa~~~a~g 23 (335)
||+-.|++|+.+|..-++.++..
T Consensus 1 MWYfaWilG~~lA~~~~i~~a~w 23 (28)
T PF08173_consen 1 MWYFAWILGVLLACAFGILNAMW 23 (28)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999999988765
No 92
>TIGR02106 cyd_oper_ybgT cyd operon protein YbgT. This model describes a very small (as short as 33 amino acids) protein of unknown function, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It begins with an aromatic motif MWYFXW and appears to contain a membrane-spanning helix. This protein appears to be restricted to the Proteobacteria and exist in a single copy only. We suggest it may be a membrane subunit of the terminal oxidase. The family is named after the E. coli member YbgT. This model excludes the apparently related protein YccB.
Probab=60.60 E-value=11 Score=23.80 Aligned_cols=24 Identities=21% Similarity=0.025 Sum_probs=21.1
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHH
Q 019850 1 MGLSENSKGLILAVASSAFIGSSF 24 (335)
Q Consensus 1 ~~~~~~~iGvllAl~sa~~~a~g~ 24 (335)
||+-.|++|+.+|+.-++.+++-.
T Consensus 1 MWYfaWilG~~lA~~~~v~~a~w~ 24 (30)
T TIGR02106 1 MWYFAWILGTLLACAFGVLNAMWL 24 (30)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999999999887754
No 93
>PRK14749 hypothetical protein; Provisional
Probab=59.03 E-value=17 Score=22.91 Aligned_cols=24 Identities=17% Similarity=0.044 Sum_probs=20.9
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHH
Q 019850 1 MGLSENSKGLILAVASSAFIGSSF 24 (335)
Q Consensus 1 ~~~~~~~iGvllAl~sa~~~a~g~ 24 (335)
||+-.|++|+.+|..-++.++.-.
T Consensus 1 MWYfaWiLG~~lAc~f~ilna~w~ 24 (30)
T PRK14749 1 MWYLLWFVGILLMCSLSTLVLVWL 24 (30)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999998887654
No 94
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=58.39 E-value=62 Score=31.22 Aligned_cols=72 Identities=10% Similarity=0.088 Sum_probs=42.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHH
Q 019850 207 QIAYPQTWFFLTVAAVCVVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGF 281 (335)
Q Consensus 207 ~f~~~~~y~~l~~~~~~~l~Q~~~ln~aL~~~~~~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~ 281 (335)
..++|..+..+.....-.-.|-.-.=.|..++.... ...=|-..|+++++.|.++|+|+ .++.|++...++.
T Consensus 65 ~~~~p~~~~~~~l~a~li~~nW~lfiWAvn~g~~le-aSLGY~InPL~~VllG~lflkEr--ls~~Q~iAV~lA~ 136 (293)
T COG2962 65 LLKQPKTLLMLALTALLIGLNWWLFIWAVNNGHVLE-ASLGYFINPLVNVLLGRLFLKER--LSRLQWIAVGLAA 136 (293)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHhheecCCCchhH-HHhHHHHHHHHHHHHHHHHHHhh--ccHHHHHHHHHHH
Confidence 356676666655555444445333333444433322 22334567888999999999995 4567776555443
No 95
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=57.25 E-value=9.7 Score=31.21 Aligned_cols=93 Identities=15% Similarity=0.246 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhccCCCccCCcccccccchhHHHHHHHH---HHHHHHHHHHHhhc-------chh
Q 019850 9 GLILAVASSAFIGSSFILKKKGLKRAGASGTRAGVGGYTYLLEPLWWAGMVTM---IVGEVANFVAYVYA-------PAV 78 (335)
Q Consensus 9 GvllAl~sa~~~a~g~vlqk~~~~~~~~~~~~~~~~~~~~~~~p~w~~G~~l~---~~g~~~~~~al~~~-------p~s 78 (335)
.++|-++|++++..+- +|+.|... .+|+|.+=++.- ...+.+|.=|-+.+ .+-
T Consensus 3 ti~LL~~SN~FMTfAW----YGHLK~~~-------------~~pl~~ail~SWgIAffEY~l~VPANRiG~~~~s~~QLK 65 (108)
T PF04342_consen 3 TILLLILSNIFMTFAW----YGHLKFKS-------------SKPLWIAILISWGIAFFEYCLQVPANRIGYQTFSLAQLK 65 (108)
T ss_pred hhHHHHHHHHHHHHHH----HHHhhccc-------------cCcHHHHHHHHHHHHHHHHHHhCcchhhhccccCHHHHH
Confidence 3567778888877653 45554321 135555444332 23334554443332 233
Q ss_pred hhhchhhHHHHHHHHHHHHHhccccccchhHHHHHHhhheee
Q 019850 79 LVTPLGALSIIISAVLAHFMLKERLQKMGILGCITCIVGSVV 120 (335)
Q Consensus 79 lv~Pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~l 120 (335)
..|- ++++..=.+++.+++||+++.....|-++++.++.+
T Consensus 66 i~QE--vitL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~f 105 (108)
T PF04342_consen 66 IIQE--VITLVVFAPFSVFYLGEPLKWNYLWAFLCILGAVYF 105 (108)
T ss_pred HHHH--HHhhheeHHHHHHHhCCCccHHHHHHHHHHHHhhhe
Confidence 3332 234444467899999999999999999888776543
No 96
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=52.58 E-value=1.8e+02 Score=26.83 Aligned_cols=15 Identities=13% Similarity=0.005 Sum_probs=9.0
Q ss_pred eecccCCCchhHHHH
Q 019850 163 HFEPRCGQTNILVYL 177 (335)
Q Consensus 163 ~~~~r~~~~~~~~~~ 177 (335)
+...|+++|+.....
T Consensus 52 ~l~dr~g~r~~~~~~ 66 (379)
T TIGR00881 52 SVSDRSNPRVFLPIG 66 (379)
T ss_pred HHHHhhCCeehhHHH
Confidence 455677777655543
No 97
>PF03605 DcuA_DcuB: Anaerobic c4-dicarboxylate membrane transporter; InterPro: IPR004668 These proteins are members of the C4-Dicarboxylate Uptake (Dcu) family. Most proteins in this family are predicted to have 12 GES predicted transmembrane regions; however the one member whose membrane topology has been experimentally determined has 10 transmembrane regions, with both the N- and C-termini localized to the periplasm []. The DcuA and DcuB proteins are involved in the transport of aspartate, malate, fumarate and succinate in many species [, , ], and are thought to function as antiporters with any two of these substrates. Since DcuA is encoded in an operon with the gene for aspartase, and DcuB is encoded in an operon with the gene for fumarase, their physiological functions may be to catalyze aspartate:fumarate and fumarate:malate exchange during the anaerobic utilization of aspartate and fumarate, respectively []. The Escherichia coli DcuA and DcuB proteins have very different expression patterns []. DcuA is constitutively expressed; DcuB is strongly induced anaerobically by FNR and C4-dicarboxylates, while it is repressed by nitrate and subject to CRP-mediated catabolite repression.; GO: 0015556 C4-dicarboxylate transmembrane transporter activity, 0015740 C4-dicarboxylate transport, 0016021 integral to membrane
Probab=48.70 E-value=38 Score=33.66 Aligned_cols=49 Identities=18% Similarity=0.338 Sum_probs=29.2
Q ss_pred hhhhchhhHHHHHHHHHHHHHhcc---------------------------ccccchhHHHHHHhhheeeEEEecC
Q 019850 78 VLVTPLGALSIIISAVLAHFMLKE---------------------------RLQKMGILGCITCIVGSVVIVIHAP 126 (335)
Q Consensus 78 slv~Pl~~~~lv~~~~la~~~l~e---------------------------~~~~~~~~g~~li~~G~~l~~~~~~ 126 (335)
.+.-|-.-++.+.+++.+.+.=|| +++++-+.++.+-..|++.++.++.
T Consensus 167 ~V~iPat~ig~~~~a~~~~~~GkeL~~Dp~yq~rl~~g~~~~~~~~~~~~~~~~~~Ak~SV~iFl~gv~~VV~~g~ 242 (364)
T PF03605_consen 167 AVTIPATLIGVLVAAFVSSRRGKELDDDPEYQERLADGLVKPPIKEESTEKELPPSAKLSVLIFLLGVVAVVLYGS 242 (364)
T ss_pred HhhHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHhccccccccccccccccCChhhHHHHHHHHHHHHHHHHHHH
Confidence 444566666777777766654221 3444556677777777666655543
No 98
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=42.77 E-value=44 Score=28.15 Aligned_cols=29 Identities=28% Similarity=0.461 Sum_probs=15.9
Q ss_pred HHHHHHhhcccCCCChhHHHHHHHHHHHHHHHHhhh
Q 019850 256 IIASAIMFKDWSGQDVSGIASEICGFITVLSGTIIL 291 (335)
Q Consensus 256 i~~G~i~f~E~~~~~~~~~~~~~~G~~l~i~Gv~lL 291 (335)
+..|.+.+++ .+...+.|..+.+.|++.+
T Consensus 75 if~G~l~~~~-------~~~~~i~g~~~~~~G~~~i 103 (136)
T PF08507_consen 75 IFLGTLCLGQ-------SILSIIIGLLLFLVGVIYI 103 (136)
T ss_pred HHHHHHHHhh-------HHHHHHHHHHHHHHHHHHH
Confidence 3355555555 4455556666666665544
No 99
>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This family is the conserved C-terminal domain of the member proteins.
Probab=42.34 E-value=48 Score=25.38 Aligned_cols=50 Identities=18% Similarity=0.265 Sum_probs=38.2
Q ss_pred ccccchhHHHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHHh
Q 019850 240 AAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGTI 289 (335)
Q Consensus 240 ~~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~l~i~Gv~ 289 (335)
...++|+.|++-.++..+.+..-+.+..+.+|..+...+.++...+.|.+
T Consensus 13 ~mfiYP~~Yi~lwlfP~~~~~~~~~~~~~~~p~~~l~~i~~~~~~~~G~V 62 (76)
T PF11970_consen 13 SMFIYPLVYIVLWLFPFAAHRMQYMYEIGHGPSFWLFCIAGFMQPSQGFV 62 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHccCHH
Confidence 45788999999888888888888875555556677777777777777654
No 100
>PF04531 Phage_holin_1: Bacteriophage holin; InterPro: IPR006485 Phage proteins for bacterial lysis typically include a membrane-disrupting protein, or holin, and one or more cell wall degrading enzymes that reach the cell wall because of holin action. Holins are found in a large number of mutually non-homologous families. This entry is represented by the Bacteriophage phi-LC3, holin. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=41.89 E-value=1.5e+02 Score=23.04 Aligned_cols=23 Identities=13% Similarity=0.362 Sum_probs=16.4
Q ss_pred ccccchhHHHHHHHHHHHHHHHH
Q 019850 47 TYLLEPLWWAGMVTMIVGEVANF 69 (335)
Q Consensus 47 ~~~~~p~w~~G~~l~~~g~~~~~ 69 (335)
.-+|+|.||++++..++-.+.++
T Consensus 6 vR~kN~~~w~ali~~i~l~vq~~ 28 (84)
T PF04531_consen 6 VRFKNKAFWVALISAILLLVQQV 28 (84)
T ss_pred hcccCHHHHHHHHHHHHHHHHHH
Confidence 34799999999987665444444
No 101
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=39.73 E-value=1.7e+02 Score=26.70 Aligned_cols=48 Identities=13% Similarity=0.086 Sum_probs=28.4
Q ss_pred HHHHhhccccccccchhHHHHHHHHHHHHHHHhhcccCCCChhHHHHHHHH
Q 019850 230 YLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICG 280 (335)
Q Consensus 230 ~ln~aL~~~~~~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G 280 (335)
+...|+++-+.....-+ +...|+...+.+..+++|. .+..++....+|
T Consensus 86 ~~~~a~~~~~~~~a~~l-~~~~Pi~~~lla~~~l~Ek--~~~~~~l~~~~~ 133 (256)
T TIGR00688 86 LFIWAVNNGSSLEVSLG-YLINPLVMVALGRVFLKER--ISRFQFIAVIIA 133 (256)
T ss_pred HHHHHHHcchHHHHHHH-HHHHHHHHHHHHHHHHhcC--CCHHHHHHHHHH
Confidence 45556665544433333 3457777888888888884 445555444443
No 102
>KOG4536 consensus Predicted membrane protein [Function unknown]
Probab=39.38 E-value=1.1e+02 Score=29.47 Aligned_cols=106 Identities=15% Similarity=0.188 Sum_probs=60.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhcccccc----ccchhHHHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHH
Q 019850 208 IAYPQTWFFLTVAAVCVVTQLNYLNKALDTFNAA----IVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFIT 283 (335)
Q Consensus 208 f~~~~~y~~l~~~~~~~l~Q~~~ln~aL~~~~~~----~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~l 283 (335)
-..|.+|.-+..++.-=.+| .+..+|-.+++. .+--..+|.+.+..=+.-+.+++++.+.+|.+.-..-+
T Consensus 223 Psr~sFy~Y~~im~~Ln~Lq--~~gsal~~f~~~~Glc~vgitt~~Yf~fy~PliYvtFLr~ff~~ep~nl~~~~~---- 296 (347)
T KOG4536|consen 223 PSRPSFYVYIGIMAALNLLQ--LLGSALTAFDAHFGLCLVGITTVCYFAFYLPLIYVTFLRDFFQEEPLNLENVYC---- 296 (347)
T ss_pred CCcchHHHHHHHHHHHHHHH--HHHHHHHhcccccceEEechhHHHHHHHHHHHHHHHHHHHHhcCCCccchhhhh----
Confidence 34556666555555443434 334455444432 22222333444444445666667766666665544333
Q ss_pred HHHHHhhhccccCCcCCCCCCCccccccCCCCCCCCCCcCccc
Q 019850 284 VLSGTIILHATREHEQTTAPVGTVTWYVSGDSLKGAEEEHLIT 326 (335)
Q Consensus 284 ~i~Gv~lLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (335)
-...+++.....-+.++++|+++||-.+-++-||+.
T Consensus 297 -------yre~kd~aGa~~~~da~y~~~~~~sa~~~~~l~d~~ 332 (347)
T KOG4536|consen 297 -------YREMKDAAGAAGFFDADYESTQFDSAGGVAYLDDIA 332 (347)
T ss_pred -------HHhhhhhccCCCCccccCcccccCCCCchhhhhhhh
Confidence 333333344555788999999999988888877764
No 103
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=38.50 E-value=24 Score=33.27 Aligned_cols=41 Identities=10% Similarity=0.184 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHhccccccchhHHHHHHhhheeeEEEecC
Q 019850 86 LSIIISAVLAHFMLKERLQKMGILGCITCIVGSVVIVIHAP 126 (335)
Q Consensus 86 ~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~l~~~~~~ 126 (335)
.-=.|+.+.+..+++.+++.++|+|++++..+...-+..+.
T Consensus 276 TRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~~GK 316 (337)
T KOG1580|consen 276 TRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVVDGK 316 (337)
T ss_pred hHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhhcCC
Confidence 34568899999999999999999999999999776555554
No 104
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=38.35 E-value=4.6e+02 Score=26.95 Aligned_cols=53 Identities=17% Similarity=0.117 Sum_probs=38.4
Q ss_pred hhHHHHHHHHHHHHHHHHhhhccccCCcCCCCCCCccccccCCCCCCCCCCcC
Q 019850 271 VSGIASEICGFITVLSGTIILHATREHEQTTAPVGTVTWYVSGDSLKGAEEEH 323 (335)
Q Consensus 271 ~~~~~~~~~G~~l~i~Gv~lLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (335)
.|+...+.-|++.+++|++++-+-++.|.+..=|....||=+....+..|+|+
T Consensus 183 ~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~d~~e~~~~~~~~ 235 (448)
T COG2271 183 GWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDPLEIYEEEKEN 235 (448)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhcCchhhhhhhccC
Confidence 57888888999999999999988888887777777666665533333333343
No 105
>COG4890 Predicted outer membrane lipoprotein [Function unknown]
Probab=37.47 E-value=81 Score=20.60 Aligned_cols=24 Identities=25% Similarity=0.062 Sum_probs=19.1
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHH
Q 019850 1 MGLSENSKGLILAVASSAFIGSSF 24 (335)
Q Consensus 1 ~~~~~~~iGvllAl~sa~~~a~g~ 24 (335)
||+-.|++|++||-.-++.++.-.
T Consensus 1 MWYFaWiLG~lLAcAFgiinAlwl 24 (37)
T COG4890 1 MWYFAWILGLLLACAFGIINALWL 24 (37)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999877777766553
No 106
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=33.42 E-value=3e+02 Score=24.73 Aligned_cols=56 Identities=23% Similarity=0.445 Sum_probs=30.8
Q ss_pred chhHHHHHHHHHHHHHHHHHH---Hhhcchhh---hhchhhHHHHHHHHHHHHHhccccccc
Q 019850 51 EPLWWAGMVTMIVGEVANFVA---YVYAPAVL---VTPLGALSIIISAVLAHFMLKERLQKM 106 (335)
Q Consensus 51 ~p~w~~G~~l~~~g~~~~~~a---l~~~p~sl---v~Pl~~~~lv~~~~la~~~l~e~~~~~ 106 (335)
++.||-.++..++..+.++.. .++.|..+ +.|...+-+-..+...++++|.|.+.+
T Consensus 143 r~~~~k~~~~~~~~~~~w~~~~~~~~~lp~~inp~l~~~~~iiig~i~~~~~~~lkkk~~i~ 204 (206)
T PF06570_consen 143 RPSWWKYILISVLAMVLWIVIFVLTSFLPPVINPVLPPWVYIIIGVIAFALRFYLKKKYNIT 204 (206)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHccccCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 345555555544444444433 23344442 445555544455667888888887654
No 107
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=31.23 E-value=3.9e+02 Score=24.39 Aligned_cols=58 Identities=26% Similarity=0.383 Sum_probs=38.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHH---hhcchhh--hhchhhHHHHHHHHHH-HHHhccccccch
Q 019850 50 LEPLWWAGMVTMIVGEVANFVAY---VYAPAVL--VTPLGALSIIISAVLA-HFMLKERLQKMG 107 (335)
Q Consensus 50 ~~p~w~~G~~l~~~g~~~~~~al---~~~p~sl--v~Pl~~~~lv~~~~la-~~~l~e~~~~~~ 107 (335)
+||.||=+++...+...+|+.-+ +|.|.|+ .-|-.++.++-...++ +|++|+|.+.+.
T Consensus 157 qr~~~~K~~lv~~~sm~lWi~v~i~t~~lPtslN~~L~pi~l~IiGav~lalRfylkkk~NIqs 220 (226)
T COG4858 157 QRPGTWKYLLVAVLSMLLWIAVMIATVFLPTSLNPQLPPIALTIIGAVILALRFYLKKKKNIQS 220 (226)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHhhCCCcCCcCCchHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 47888999888877777775544 5667664 3444555555555544 677788877653
No 108
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=30.96 E-value=5.2e+02 Score=25.35 Aligned_cols=68 Identities=9% Similarity=0.132 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHhhcchhhhhchhhHHHHHHHHHHHHHhccccccchhHHHHHHhhheeeEEEecCCC
Q 019850 61 MIVGEVANFVAYVYAPAVLVTPLGALSIIISAVLAHFMLKERLQKMGILGCITCIVGSVVIVIHAPQE 128 (335)
Q Consensus 61 ~~~g~~~~~~al~~~p~slv~Pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~l~~~~~~~~ 128 (335)
..++.-++..||.+.+--...=-=+.-++=.++++.++-|+|.+..|.+-..+|..|+.++..+..++
T Consensus 93 n~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~ 160 (327)
T KOG1581|consen 93 NTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSD 160 (327)
T ss_pred hhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCC
Confidence 35667788888887654433323344566678889999999999999999999999999988876555
No 109
>PRK06638 NADH:ubiquinone oxidoreductase subunit J; Provisional
Probab=30.19 E-value=4.1e+02 Score=23.91 Aligned_cols=35 Identities=17% Similarity=0.451 Sum_probs=23.0
Q ss_pred HHHHhhcccCCCChhHHHHHHHH--HHHHHHHHhhhccccCCc
Q 019850 258 ASAIMFKDWSGQDVSGIASEICG--FITVLSGTIILHATREHE 298 (335)
Q Consensus 258 ~G~i~f~E~~~~~~~~~~~~~~G--~~l~i~Gv~lLs~~~~~~ 298 (335)
.|..+|.|+ ....++.| +++...|.+.|++++...
T Consensus 135 iG~~L~t~y------~l~fe~~silLLvAmIGAI~La~~~~~~ 171 (198)
T PRK06638 135 IGILLFTDY------LLPFELASVLLLVAMVGAIVLARRERAR 171 (198)
T ss_pred HHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhhhcccCC
Confidence 478888773 34444555 455678999999876543
No 110
>KOG3030 consensus Lipid phosphate phosphatase and related enzymes of the PAP2 family [Lipid transport and metabolism]
Probab=26.65 E-value=6.1e+02 Score=24.78 Aligned_cols=78 Identities=13% Similarity=0.097 Sum_probs=53.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccccchhHHHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHH
Q 019850 207 QIAYPQTWFFLTVAAVCVVTQLNYLNKALDTFN-AAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVL 285 (335)
Q Consensus 207 ~f~~~~~y~~l~~~~~~~l~Q~~~ln~aL~~~~-~~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~l~i 285 (335)
.-+++.+|.+.+..+ |+++-+.... .-..-|+.+......+...|+-=-.|..+---.-+++.++|..+..
T Consensus 184 GHsS~s~y~~~flal--------yl~~~~~~~~~~rllr~~l~f~~l~~A~~v~lSRV~DYkHHwsDV~aG~liG~~~A~ 255 (317)
T KOG3030|consen 184 GHSSFSFYAMGFLAL--------YLQARLFWFGRGRLLRPLLQFLPLMLALLVGLSRVSDYKHHWSDVLAGALIGAFVAY 255 (317)
T ss_pred ccHHHHHHHHHHHHH--------HHHHHHhcCCCchhHHHHHHHHHHHHHHHHeeehhcccccccHHHHHHHHHHHHHHH
Confidence 456777777766655 7777776665 7788999999888888888886666665542334477777766555
Q ss_pred HHHhhhc
Q 019850 286 SGTIILH 292 (335)
Q Consensus 286 ~Gv~lLs 292 (335)
+-..-..
T Consensus 256 ~~~~~v~ 262 (317)
T KOG3030|consen 256 FLYRYVF 262 (317)
T ss_pred HHHhhhc
Confidence 5444443
No 111
>PF05084 GRA6: Granule antigen protein (GRA6); InterPro: IPR008119 Toxoplasma gondii is an obligate intracellular apicomplexan protozoan parasite, with a complex lifestyle involving varied hosts []. It has two phases of growth: an intestinal phase in feline hosts, and an extra-intestinal phase in other mammals. Oocysts from infected cats develop into tachyzoites, and eventually, bradyzoites and zoitocysts in the extraintestinal host []. Transmission of the parasite occurs through contact with infected cats or raw/undercooked meat; in immunocompromised individuals, it can cause severe and often lethal toxoplasmosis. Acute infection in healthy humans can sometimes also cause tissue damage []. The protozoan utilises a variety of secretory and antigenic proteins to invade a host and gain access to the intracellular environment []. These originate from distinct organelles in the T. gondii cell termed micronemes, rhoptries, and dense granules. They are released at specific times during invasion to ensure the proteins are allocated to their correct target destinations []. Dense granule antigens (GRAs) are released from the T. gondii tachyzoite while still encapsulated in a host vacuole. Gra6, one of these moieties, is associated with the parasitophorous vacuole []. It possesses a hydrophobic central region flanked by two hydrophilic domains, and is present as a single copy gene in the Toxoplasma gondii genome []. Gra6 shares a similar function with Gra2, in that it is rapidly targeted to a network of membranous tubules that connect with the vacuolar membrane []. Indeed, these two proteins, together with Gra4, form a multimeric complex that stabilises the parasite within the vacuole.
Probab=25.36 E-value=43 Score=29.61 Aligned_cols=62 Identities=16% Similarity=0.224 Sum_probs=37.3
Q ss_pred HHHhhcccCCCChhHHHHHHHHHHHHHHHHhhhcccc------------------CCcCCCCCCCccccccCCCCCCCCC
Q 019850 259 SAIMFKDWSGQDVSGIASEICGFITVLSGTIILHATR------------------EHEQTTAPVGTVTWYVSGDSLKGAE 320 (335)
Q Consensus 259 G~i~f~E~~~~~~~~~~~~~~G~~l~i~Gv~lLs~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (335)
+-+..+....+.|....+...-+ +++.|+.+=+... +...++..||++.+|||+..+.++.
T Consensus 4 ~~~~~R~kR~F~PLTV~~~AV~~-V~FMGV~~~S~G~~~~A~~~~~Vq~~~~~~~S~G~~~~AVGTtEdYVNSS~m~G~~ 82 (215)
T PF05084_consen 4 GGIHLRQKRNFCPLTVSTVAVVF-VVFMGVLVNSLGGVAVAADSGGVQQTPSETGSSGGQQEAVGTTEDYVNSSAMGGGQ 82 (215)
T ss_pred cchhhhhhcccCCceehhhHHHH-HHhhcceeccccceeeccCccccccCccccCCCCCCcccccchHhhhhhhhhcCCC
Confidence 34455566666666665554443 4566665543321 1124677899999999977666654
Q ss_pred C
Q 019850 321 E 321 (335)
Q Consensus 321 ~ 321 (335)
|
T Consensus 83 ~ 83 (215)
T PF05084_consen 83 G 83 (215)
T ss_pred C
Confidence 4
No 112
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.12 E-value=36 Score=32.84 Aligned_cols=55 Identities=16% Similarity=0.248 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhhcchhhhhchhhHHHHHHHHHHHHHhccccccchhHHHHHHhhh
Q 019850 63 VGEVANFVAYVYAPAVLVTPLGALSIIISAVLAHFMLKERLQKMGILGCITCIVG 117 (335)
Q Consensus 63 ~g~~~~~~al~~~p~slv~Pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G 117 (335)
++-..|-..|++.|.+.=+-==++..+||.+++..++|+|-+..-..+|.+|+.|
T Consensus 114 ~mI~fnnlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~G 168 (347)
T KOG1442|consen 114 LMISFNNLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILG 168 (347)
T ss_pred eehhccceehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheeh
Confidence 3334566667777777666667889999999999999999999988899988888
No 113
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.67 E-value=92 Score=27.12 Aligned_cols=39 Identities=26% Similarity=0.370 Sum_probs=26.3
Q ss_pred hhchhhHHHHHHHHHHHHHh----ccccccchhHHHHHHhhhe
Q 019850 80 VTPLGALSIIISAVLAHFML----KERLQKMGILGCITCIVGS 118 (335)
Q Consensus 80 v~Pl~~~~lv~~~~la~~~l----~e~~~~~~~~g~~li~~G~ 118 (335)
+.-..+-+++.++++=++=. +++++..++.|++++.+|+
T Consensus 99 ~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gi 141 (150)
T COG3238 99 IALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGI 141 (150)
T ss_pred HHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHH
Confidence 33334445555555555544 3888999999999999993
No 114
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=24.35 E-value=8e+02 Score=25.36 Aligned_cols=42 Identities=10% Similarity=-0.051 Sum_probs=25.7
Q ss_pred HHHHHHHhhcc-ccccccchhHHHHHHHHHHHHHHHhhcccCC
Q 019850 227 QLNYLNKALDT-FNAAIVSPVYYVMFTTLTIIASAIMFKDWSG 268 (335)
Q Consensus 227 Q~~~ln~aL~~-~~~~~v~P~~~v~~~~~~i~~G~i~f~E~~~ 268 (335)
=....|..++- .......-+........+.+.+-++.....+
T Consensus 388 ~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap 430 (495)
T KOG2533|consen 388 ALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDAP 430 (495)
T ss_pred HHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccCc
Confidence 34456666643 2245556666667777777777777766544
No 115
>PF11297 DUF3098: Protein of unknown function (DUF3098); InterPro: IPR021448 This bacterial family of proteins has no known function.
Probab=23.82 E-value=1.2e+02 Score=23.04 Aligned_cols=28 Identities=11% Similarity=0.200 Sum_probs=23.7
Q ss_pred hhHHHHHHHHHHHHHHHHhhhccccCCc
Q 019850 271 VSGIASEICGFITVLSGTIILHATREHE 298 (335)
Q Consensus 271 ~~~~~~~~~G~~l~i~Gv~lLs~~~~~~ 298 (335)
-.+..++.+|+++++.|-++++..++.+
T Consensus 5 k~Nyill~iG~~vIilGfilMsg~~s~d 32 (69)
T PF11297_consen 5 KKNYILLAIGIAVIILGFILMSGGGSDD 32 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHheeCCCCCC
Confidence 3578899999999999999999766554
No 116
>PF06966 DUF1295: Protein of unknown function (DUF1295); InterPro: IPR010721 This family contains a number of bacterial and eukaryotic proteins of unknown function that are approximately 300 residues long.
Probab=23.43 E-value=5.8e+02 Score=23.39 Aligned_cols=58 Identities=19% Similarity=0.272 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCc-cCCccc------ccccchhHHHHHHHHHHHH
Q 019850 7 SKGLILAVASSAFIGSSFILKKKGLKRAGASGTR-AGVGGY------TYLLEPLWWAGMVTMIVGE 65 (335)
Q Consensus 7 ~iGvllAl~sa~~~a~g~vlqk~~~~~~~~~~~~-~~~~~~------~~~~~p~w~~G~~l~~~g~ 65 (335)
++|+.+.+++-.+-++++ .||+-.++.++.+.+ -..+.. .|+-+-.+|.|+.+++.+.
T Consensus 122 ~~g~~l~~~g~~~E~~AD-~Q~~~fk~~~~n~g~~~~~GLw~~sRHPNYfGE~l~W~g~~~~a~~~ 186 (235)
T PF06966_consen 122 ILGIALFLIGFLLETVAD-QQKYRFKKDPANKGKFCTTGLWRYSRHPNYFGEILFWWGIYLAAISS 186 (235)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHhhCcccCCccccCCeeeeeeCchHHHHHHHHHHHHHHHHhh
Confidence 567788888887778888 566656655542111 011233 4555667788887776655
No 117
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=23.02 E-value=6.9e+02 Score=24.12 Aligned_cols=27 Identities=11% Similarity=0.173 Sum_probs=22.8
Q ss_pred cccchhHHHHHHHHHHHHHHHhhcccC
Q 019850 241 AIVSPVYYVMFTTLTIIASAIMFKDWS 267 (335)
Q Consensus 241 ~~v~P~~~v~~~~~~i~~G~i~f~E~~ 267 (335)
....|-+-..|-..+++.+...+.+..
T Consensus 240 ~~~~P~FvlgFl~~~~l~s~~~~~~~~ 266 (305)
T PF03601_consen 240 KVSFPWFVLGFLAASLLNSLGLLPAAV 266 (305)
T ss_pred ccCcCHHHHHHHHHHHHHHHhhhHHHH
Confidence 467999999999999999998887543
No 118
>PF11022 DUF2611: Protein of unknown function (DUF2611); InterPro: IPR021278 This family is conserved in the Dikarya of Fungi. The function is not known.
Probab=22.23 E-value=64 Score=24.55 Aligned_cols=20 Identities=10% Similarity=0.204 Sum_probs=9.1
Q ss_pred HHHHHHHHHHhhhccccCCc
Q 019850 279 CGFITVLSGTIILHATREHE 298 (335)
Q Consensus 279 ~G~~l~i~Gv~lLs~~~~~~ 298 (335)
+|.+...+|.+.++.+....
T Consensus 19 i~tLg~~~~~~~~~~~g~k~ 38 (71)
T PF11022_consen 19 IATLGTVFGGVYLATSGSKK 38 (71)
T ss_pred HHHHHHHHHHheeccCCCCC
Confidence 34444444455554444433
No 119
>PF07457 DUF1516: Protein of unknown function (DUF1516); InterPro: IPR010899 This family contains a number of hypothetical bacterial proteins of unknown function approximately 120 residues long.
Probab=21.62 E-value=4.5e+02 Score=21.49 Aligned_cols=44 Identities=18% Similarity=0.287 Sum_probs=27.8
Q ss_pred HHHHHHHhhcc-cCCCChhHHHHHHHHHHHHHHHHhhhccccCCc
Q 019850 255 TIIASAIMFKD-WSGQDVSGIASEICGFITVLSGTIILHATREHE 298 (335)
Q Consensus 255 ~i~~G~i~f~E-~~~~~~~~~~~~~~G~~l~i~Gv~lLs~~~~~~ 298 (335)
.++.|...+-+ +.+.+.....-..+|+.++..-=..++|+++.+
T Consensus 46 iiisG~~L~~~~~~~~~~l~~iK~l~gl~vI~lmEm~l~rkkk~k 90 (110)
T PF07457_consen 46 IIISGVWLFIRTFAGNPMLYIIKMLLGLIVIGLMEMALARKKKGK 90 (110)
T ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 44455554443 666666777778888776666566667666644
No 120
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=20.52 E-value=8.3e+02 Score=24.11 Aligned_cols=59 Identities=15% Similarity=0.084 Sum_probs=50.6
Q ss_pred HHHHHHHHhhcchhhhhchhhHHHHHHHHHHHHHhccccccchhHHHHHHhhheeeEEE
Q 019850 65 EVANFVAYVYAPAVLVTPLGALSIIISAVLAHFMLKERLQKMGILGCITCIVGSVVIVI 123 (335)
Q Consensus 65 ~~~~~~al~~~p~slv~Pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~l~~~ 123 (335)
-.++=+++.+.|+|+=+-.=+.+++|-++++..+==|+++..-..=+.+|.+|+.+...
T Consensus 98 IGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~ 156 (349)
T KOG1443|consen 98 IGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTY 156 (349)
T ss_pred cccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEe
Confidence 34667889999999998899999999999999998899988877788888888777764
Done!