Query 019850
Match_columns 335
No_of_seqs 144 out of 728
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 08:02:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019850.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019850hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 99.0 1.9E-09 6.7E-14 87.4 10.2 100 10-124 4-104 (110)
2 2i68_A Protein EMRE; transmemb 98.8 2.4E-09 8.1E-14 90.4 5.1 99 11-124 5-104 (137)
3 2i68_A Protein EMRE; transmemb 98.0 2.1E-05 7.2E-10 66.1 8.3 69 221-295 37-105 (137)
4 3b5d_A Multidrug transporter E 97.4 0.0024 8.4E-08 51.1 12.0 67 223-295 39-105 (110)
5 3hd6_A Ammonium transporter RH 23.1 5.5E+02 0.019 25.3 10.8 31 231-261 333-363 (490)
6 3rko_J NADH-quinone oxidoreduc 22.0 1.1E+02 0.0037 26.3 4.8 38 257-300 128-167 (184)
7 3b9w_A Ammonium transporter fa 14.4 7.8E+02 0.027 23.5 9.5 79 231-313 284-364 (407)
8 2zxe_G FXYD10, phospholemman-l 11.2 1.5E+02 0.0052 21.6 2.5 25 271-295 18-42 (74)
9 1pw4_A Glycerol-3-phosphate tr 10.6 8.4E+02 0.029 21.6 10.2 14 162-175 83-96 (451)
10 2jp3_A FXYD domain-containing 10.6 1.4E+02 0.0048 21.4 2.1 24 271-294 16-39 (67)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=99.00 E-value=1.9e-09 Score=87.44 Aligned_cols=100 Identities=13% Similarity=0.082 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhccCCCccCCcccccccchhHHHHHHHHHHHHHHHHHHHhhcchhhhhch-hhHHH
Q 019850 10 LILAVASSAFIGSSFILKKKGLKRAGASGTRAGVGGYTYLLEPLWWAGMVTMIVGEVANFVAYVYAPAVLVTPL-GALSI 88 (335)
Q Consensus 10 vllAl~sa~~~a~g~vlqk~~~~~~~~~~~~~~~~~~~~~~~p~w~~G~~l~~~g~~~~~~al~~~p~slv~Pl-~~~~l 88 (335)
-++-+++.++-+.|+.+.|++.. ..+.+.++.+.+++++++.+...++...|++.+.|+ .+++.
T Consensus 4 ~l~l~~a~~~e~~~~~~lK~s~~---------------~~~~~~~~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~ 68 (110)
T 3b5d_A 4 YIYLGGAILAEVIGTTLMKFSEG---------------FTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGI 68 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhccC---------------cchHHHHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHH
Confidence 35567788888999999998620 113456677888899999999999999999999999 89999
Q ss_pred HHHHHHHHHHhccccccchhHHHHHHhhheeeEEEe
Q 019850 89 IISAVLAHFMLKERLQKMGILGCITCIVGSVVIVIH 124 (335)
Q Consensus 89 v~~~~la~~~l~e~~~~~~~~g~~li~~G~~l~~~~ 124 (335)
+++.+++.+++||++|+.+++|+.+++.|++++...
T Consensus 69 v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 69 VLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999998877543
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.83 E-value=2.4e-09 Score=90.40 Aligned_cols=99 Identities=14% Similarity=0.074 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhccCCCccCCcccccccchhHHHHHHHHHHHHHHHHHHHhhcchhhhhch-hhHHHH
Q 019850 11 ILAVASSAFIGSSFILKKKGLKRAGASGTRAGVGGYTYLLEPLWWAGMVTMIVGEVANFVAYVYAPAVLVTPL-GALSII 89 (335)
Q Consensus 11 llAl~sa~~~a~g~vlqk~~~~~~~~~~~~~~~~~~~~~~~p~w~~G~~l~~~g~~~~~~al~~~p~slv~Pl-~~~~lv 89 (335)
++-+++.++-+.|+.+.|++. . . .+.+.++.|++++++++.++..++...|++.+.|+ .+++.+
T Consensus 5 l~Ll~ail~ev~~~~~lK~s~---g---------~---~~~~~~~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv 69 (137)
T 2i68_A 5 IYLGGAILAEVIGTTLMKFSE---G---------F---TRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIV 69 (137)
T ss_dssp HHHHHHHHHHHHHHHHC---------------------------CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc---c---------c---chHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Confidence 455677888899999999862 0 0 12355678889999999999999999999999999 899999
Q ss_pred HHHHHHHHHhccccccchhHHHHHHhhheeeEEEe
Q 019850 90 ISAVLAHFMLKERLQKMGILGCITCIVGSVVIVIH 124 (335)
Q Consensus 90 ~~~~la~~~l~e~~~~~~~~g~~li~~G~~l~~~~ 124 (335)
++.+++.+++||+++..+++|+++++.|++++...
T Consensus 70 ~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 70 LISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp HHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999998877543
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=97.98 E-value=2.1e-05 Score=66.11 Aligned_cols=69 Identities=16% Similarity=0.267 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHHhhhcccc
Q 019850 221 AVCVVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGTIILHATR 295 (335)
Q Consensus 221 ~~~~l~Q~~~ln~aL~~~~~~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~l~i~Gv~lLs~~~ 295 (335)
+++...-.+++++++++.|++..+|+.....++.+.+.|.++|+|... +. -.+|.++++.|++++.+.+
T Consensus 37 i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls--~~----~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLD--LP----AIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCC--HH----HHHHHHHHHHHHHHHhcCC
Confidence 334444566899999999999999998889999999999999999654 33 3578889999999997654
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=97.39 E-value=0.0024 Score=51.15 Aligned_cols=67 Identities=18% Similarity=0.289 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHHhhhcccc
Q 019850 223 CVVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGTIILHATR 295 (335)
Q Consensus 223 ~~l~Q~~~ln~aL~~~~~~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~l~i~Gv~lLs~~~ 295 (335)
+...-..+++.++|+.|...++|+.....++.+.+.|.++|+|.. ++.+ .+|..+++.|++++...+
T Consensus 39 ~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~--s~~~----~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 39 CYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRL--DLPA----IIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCC--CHHH----HHHHHHHHHHHHHHhcCC
Confidence 333445688899999999999999989999999999999999954 4443 578889999999997654
No 5
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens}
Probab=23.09 E-value=5.5e+02 Score=25.28 Aligned_cols=31 Identities=10% Similarity=0.004 Sum_probs=22.9
Q ss_pred HHHhhccccccccchhHHHHHHHHHHHHHHH
Q 019850 231 LNKALDTFNAAIVSPVYYVMFTTLTIIASAI 261 (335)
Q Consensus 231 ln~aL~~~~~~~v~P~~~v~~~~~~i~~G~i 261 (335)
+++-++.-|+.-+.|+--+.-...+++.|+.
T Consensus 333 l~~kl~iDD~lgv~~vHGv~Gi~G~l~~glf 363 (490)
T 3hd6_A 333 LESRLHIQDTCGINNLHGIPGIIGGIVGAVT 363 (490)
T ss_dssp HHHHHCCCCTTCHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHCCCCccccchHHhhHHHHHHHHHHHHH
Confidence 5566788889999998877777766666553
No 6
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=21.99 E-value=1.1e+02 Score=26.28 Aligned_cols=38 Identities=11% Similarity=0.177 Sum_probs=24.1
Q ss_pred HHHHHhhcccCCCChhHHHHHHHHH--HHHHHHHhhhccccCCcCC
Q 019850 257 IASAIMFKDWSGQDVSGIASEICGF--ITVLSGTIILHATREHEQT 300 (335)
Q Consensus 257 ~~G~i~f~E~~~~~~~~~~~~~~G~--~l~i~Gv~lLs~~~~~~~~ 300 (335)
..|..+|.|+ -+...+.++ ++..+|.+.|+|++..++.
T Consensus 128 ~iG~~Lft~Y------~lpFElaSvlLLvAmIGAIvLarr~~~~~~ 167 (184)
T 3rko_J 128 AVGITLFGPY------VLAVELASMLLLAGLVVAFHVGREERAGEV 167 (184)
T ss_dssp HHHHHHTTTS------HHHHHHHHHHHHHHHHHHHHHHCCCCCSSC
T ss_pred HHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 4588888774 333444443 4457788999988766543
No 7
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=14.41 E-value=7.8e+02 Score=23.50 Aligned_cols=79 Identities=11% Similarity=-0.071 Sum_probs=44.6
Q ss_pred HHHhhccccccccchhHHHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHHhhh--ccccCCcCCCCCCCccc
Q 019850 231 LNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGTIIL--HATREHEQTTAPVGTVT 308 (335)
Q Consensus 231 ln~aL~~~~~~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~l~i~Gv~lL--s~~~~~~~~~~~~~~~~ 308 (335)
+++-++.-|+.-+.|+--+.-...++..|. |... .+..|+......++..+.+.+++ --+...+++++-.|.++
T Consensus 284 l~~~l~iDD~l~a~~vHgv~Gi~G~l~~gl--fa~~--~~~~Ql~g~~~~~~~s~v~~~i~~~il~~r~~~e~e~~g~~~ 359 (407)
T 3b9w_A 284 LESKAKTIDTCGVHNLHGLPGLLGGFSAIL--IVPG--IAVAQLTGIGITLALALIGGVIAGALIKLTGTTKQAYEDSHE 359 (407)
T ss_dssp HHHHSCCCCTTCHHHHTTHHHHHHHHHHHH--HSTT--CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSTTCGGGT
T ss_pred HHhcCCCCCCCCCeecchHHHHHHHHHHHH--HccC--CcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHcCCccc
Confidence 344577788999999887777776666554 3221 12346655554433333333221 11223344555678888
Q ss_pred cccCC
Q 019850 309 WYVSG 313 (335)
Q Consensus 309 ~~~~~ 313 (335)
|.+|.
T Consensus 360 we~p~ 364 (407)
T 3b9w_A 360 FIHLA 364 (407)
T ss_dssp SSSCC
T ss_pred ccCcc
Confidence 88883
No 8
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=11.21 E-value=1.5e+02 Score=21.62 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=19.3
Q ss_pred hhHHHHHHHHHHHHHHHHhhhcccc
Q 019850 271 VSGIASEICGFITVLSGTIILHATR 295 (335)
Q Consensus 271 ~~~~~~~~~G~~l~i~Gv~lLs~~~ 295 (335)
.....+++++.++.+.|+.++-..+
T Consensus 18 tLRigGLifA~vLfi~GI~iilS~k 42 (74)
T 2zxe_G 18 RLRVVGLIVAAVLCVIGIIILLAGK 42 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HheeccchhHHHHHHHHHHHHHcCc
Confidence 4566888888899999998886543
No 9
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=10.64 E-value=8.4e+02 Score=21.63 Aligned_cols=14 Identities=14% Similarity=0.022 Sum_probs=8.2
Q ss_pred heecccCCCchhHH
Q 019850 162 LHFEPRCGQTNILV 175 (335)
Q Consensus 162 ~~~~~r~~~~~~~~ 175 (335)
.+...|+|+|+...
T Consensus 83 G~l~dr~g~r~~l~ 96 (451)
T 1pw4_A 83 GSVSDRSNPRVFLP 96 (451)
T ss_dssp HHHHHHSCHHHHHH
T ss_pred HHHHHhcCchHHHH
Confidence 34566777666544
No 10
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=10.56 E-value=1.4e+02 Score=21.39 Aligned_cols=24 Identities=13% Similarity=0.164 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHHHHHHHHhhhccc
Q 019850 271 VSGIASEICGFITVLSGTIILHAT 294 (335)
Q Consensus 271 ~~~~~~~~~G~~l~i~Gv~lLs~~ 294 (335)
.....+++++.++.+.|+.++-..
T Consensus 16 tLRigGLifA~vLfi~GI~iilS~ 39 (67)
T 2jp3_A 16 SLQLGGLIFGGLLCIAGIALALSG 39 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HheecchhhHHHHHHHHHHHHHcC
Confidence 456678888888899999888554
Done!