Query 019850
Match_columns 335
No_of_seqs 144 out of 728
Neff 6.6
Searched_HMMs 13730
Date Mon Mar 25 08:02:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019850.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019850hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 51.5 27 0.002 29.5 8.8 17 45-61 15-31 (447)
2 d2axtj1 f.23.32.1 (J:7-40) Pho 9.2 1.5E+02 0.011 16.8 3.0 11 50-60 1-11 (34)
3 d1jbja2 b.1.1.4 (A:1-100) CD3 8.4 46 0.0033 23.9 0.6 30 305-334 27-61 (100)
4 d1mtyg_ a.23.3.1 (G:) Methane 7.3 41 0.003 26.0 -0.2 6 327-332 139-144 (162)
5 d1mhyg_ a.23.3.1 (G:) Methane 7.1 42 0.0031 26.1 -0.2 8 326-333 141-148 (167)
6 d2axtl1 f.23.31.1 (L:1-37) Pho 4.9 3.2E+02 0.023 15.5 3.3 22 211-232 16-37 (37)
7 d1xiwa_ b.1.1.4 (A:) CD3 epsil 4.1 1.2E+02 0.0086 21.3 0.7 21 302-322 20-40 (91)
8 d2vika_ d.109.1.1 (A:) Villin, 4.0 1.6E+02 0.012 21.4 1.5 43 292-334 4-46 (126)
9 d2p7tc1 f.14.1.1 (C:86-119) Po 3.5 3.7E+02 0.027 14.6 2.4 20 78-97 10-29 (34)
10 d1weoa_ g.44.1.1 (A:) Cellulos 3.4 3.1E+02 0.022 18.9 2.4 23 304-326 64-87 (93)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=51.53 E-value=27 Score=29.51 Aligned_cols=17 Identities=6% Similarity=-0.181 Sum_probs=10.0
Q ss_pred ccccccchhHHHHHHHH
Q 019850 45 GYTYLLEPLWWAGMVTM 61 (335)
Q Consensus 45 ~~~~~~~p~w~~G~~l~ 61 (335)
..+..|+.+|..-..++
T Consensus 15 ~~~~~~~~~w~i~~~~~ 31 (447)
T d1pw4a_ 15 IDPTYRRLRWQIFLGIF 31 (447)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred hccchhhHHHHHHHHHH
Confidence 34566777787644443
No 2
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=9.22 E-value=1.5e+02 Score=16.80 Aligned_cols=11 Identities=36% Similarity=0.700 Sum_probs=8.3
Q ss_pred cchhHHHHHHH
Q 019850 50 LEPLWWAGMVT 60 (335)
Q Consensus 50 ~~p~w~~G~~l 60 (335)
|-|+|++|.+.
T Consensus 1 riPLWlv~tv~ 11 (34)
T d2axtj1 1 RIPLWIVATVA 11 (34)
T ss_dssp CCCHHHHHHHH
T ss_pred CCcEEEeeehh
Confidence 45899998854
No 3
>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}
Probab=8.38 E-value=46 Score=23.94 Aligned_cols=30 Identities=30% Similarity=0.737 Sum_probs=22.5
Q ss_pred CccccccCCCCCCCCCCcCcc-----ccccccccc
Q 019850 305 GTVTWYVSGDSLKGAEEEHLI-----TIHNSDYYV 334 (335)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 334 (335)
+.-+|.-|+..+.+.++++++ |.+||.||.
T Consensus 27 ~~I~Wkkn~~~i~g~~~~~L~L~~FSE~e~SGyY~ 61 (100)
T d1jbja2 27 ENLKWEKNGQELPQKHDKHLVLQDFSEVEDSGYYV 61 (100)
T ss_dssp TTCEEEETTEEECSCCCSEEEEESCCTTTSCEEEE
T ss_pred CceEEeeccccCCCCCCcEEEEccccccccCcceE
Confidence 668898888888887777544 447888884
No 4
>d1mtyg_ a.23.3.1 (G:) Methane monooxygenase hydrolase, gamma subunit {Methylococcus capsulatus [TaxId: 414]}
Probab=7.27 E-value=41 Score=26.02 Aligned_cols=6 Identities=33% Similarity=0.839 Sum_probs=2.1
Q ss_pred cccccc
Q 019850 327 IHNSDY 332 (335)
Q Consensus 327 ~~~~~~ 332 (335)
+||.||
T Consensus 139 LRn~~Y 144 (162)
T d1mtyg_ 139 LRNLNY 144 (162)
T ss_dssp HHTTTT
T ss_pred hhCCcc
Confidence 333333
No 5
>d1mhyg_ a.23.3.1 (G:) Methane monooxygenase hydrolase, gamma subunit {Methylosinus trichosporium [TaxId: 426]}
Probab=7.13 E-value=42 Score=26.07 Aligned_cols=8 Identities=63% Similarity=1.252 Sum_probs=3.1
Q ss_pred cccccccc
Q 019850 326 TIHNSDYY 333 (335)
Q Consensus 326 ~~~~~~~~ 333 (335)
|+||.|||
T Consensus 141 eLRn~~Yy 148 (167)
T d1mhyg_ 141 EIRNTDYY 148 (167)
T ss_dssp HHHTTTTT
T ss_pred HhhCCccc
Confidence 33344433
No 6
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.88 E-value=3.2e+02 Score=15.47 Aligned_cols=22 Identities=9% Similarity=0.138 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 019850 211 PQTWFFLTVAAVCVVTQLNYLN 232 (335)
Q Consensus 211 ~~~y~~l~~~~~~~l~Q~~~ln 232 (335)
-..|-++.+.+.+.++-.||.|
T Consensus 16 sLy~GlLlifvl~vLFssYfFN 37 (37)
T d2axtl1 16 SLYLGLLLILVLALLFSSYFFN 37 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHhcC
Confidence 3445566666666676666654
No 7
>d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.09 E-value=1.2e+02 Score=21.28 Aligned_cols=21 Identities=19% Similarity=0.542 Sum_probs=14.4
Q ss_pred CCCCccccccCCCCCCCCCCc
Q 019850 302 APVGTVTWYVSGDSLKGAEEE 322 (335)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~ 322 (335)
+..+...|.-++...++.||+
T Consensus 20 ~~~~~i~W~~n~~~~~~~~~~ 40 (91)
T d1xiwa_ 20 YPGSEILWQHNDKNIGGDEDD 40 (91)
T ss_dssp CTTSCEEEEETTEEESSSCSC
T ss_pred CCCCceeeeeccccccCCCcc
Confidence 344667888887777776663
No 8
>d2vika_ d.109.1.1 (A:) Villin, domain 1 (res. 1-126) {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=4.02 E-value=1.6e+02 Score=21.42 Aligned_cols=43 Identities=12% Similarity=0.183 Sum_probs=28.7
Q ss_pred ccccCCcCCCCCCCccccccCCCCCCCCCCcCccccccccccc
Q 019850 292 HATREHEQTTAPVGTVTWYVSGDSLKGAEEEHLITIHNSDYYV 334 (335)
Q Consensus 292 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (335)
++.-..+.....||=.-||+.++....=++|+-=+.++.|-|+
T Consensus 4 ~~~~~~~~~~~~~gl~VWrIe~~~~~~vp~~~~G~Fysgd~Yi 46 (126)
T d2vika_ 4 SKKVTGKLDKTTPGIQIWRIENMEMVPVPTKSYGNFYEGDCYV 46 (126)
T ss_dssp TTSSTTSSCSSCCEEEEEECGGGSCCEECTTTTTCCCSSSCEE
T ss_pred cccccCceeecCCCEEEEEEeCCEEEECChHHcCEEeCCCEEE
Confidence 4444455566778999999996665555555555677777664
No 9
>d2p7tc1 f.14.1.1 (C:86-119) Potassium channel protein {Streptomyces lividans [TaxId: 1916]}
Probab=3.53 E-value=3.7e+02 Score=14.62 Aligned_cols=20 Identities=20% Similarity=0.501 Sum_probs=12.0
Q ss_pred hhhhchhhHHHHHHHHHHHH
Q 019850 78 VLVTPLGALSIIISAVLAHF 97 (335)
Q Consensus 78 slv~Pl~~~~lv~~~~la~~ 97 (335)
..|+.+.+.+++++++...+
T Consensus 10 vmvagits~glv~aa~atwf 29 (34)
T d2p7tc1 10 VMVAGITSFGLVTAALATWF 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeccchhhhHHHHHHHHh
Confidence 44566667777777664333
No 10
>d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=3.40 E-value=3.1e+02 Score=18.86 Aligned_cols=23 Identities=22% Similarity=0.189 Sum_probs=15.1
Q ss_pred CCccccccC-CCCCCCCCCcCccc
Q 019850 304 VGTVTWYVS-GDSLKGAEEEHLIT 326 (335)
Q Consensus 304 ~~~~~~~~~-~~~~~~~~~~~~~~ 326 (335)
-++.|.|-. +....+.|+|+++.
T Consensus 64 Ckt~Ykr~kgsprv~gDe~e~~~d 87 (93)
T d1weoa_ 64 CKTRYKRLRGSPRVEGDEDEEDID 87 (93)
T ss_dssp TCCCCCCCTTCCCCTTSCCCCCSC
T ss_pred cCChhhhhcCCCCCCCCccccccc
Confidence 456677766 55566677777665
Done!