BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019853
(335 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GZE|A Chain A, Structure Of The Clostridium Botulinum C3 Exoenzyme (L177c
Mutant)
pdb|1GZE|B Chain B, Structure Of The Clostridium Botulinum C3 Exoenzyme (L177c
Mutant)
pdb|1GZE|C Chain C, Structure Of The Clostridium Botulinum C3 Exoenzyme (L177c
Mutant)
pdb|1GZE|D Chain D, Structure Of The Clostridium Botulinum C3 Exoenzyme (L177c
Mutant)
Length = 211
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 171 SYADNANALKAQLDQQKNVVN----NLVSNTRLLESKIQEARSKKDTLKARAQS-AKTAT 225
SY +A+ + +L Q K V+N NL+ LL+ + ++ ++ + R A T
Sbjct: 38 SYTKSASEINGKLRQNKGVINGFPSNLIKQVELLDKSFNKMKTPENIMLFRGDDPAYLGT 97
Query: 226 KVSEMLGNVNTSSALSAFEKMEEKVL 251
+ L N N + +AFEK + K L
Sbjct: 98 EFQNTLLNSNGTINKTAFEKAKAKFL 123
>pdb|2A78|B Chain B, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|B Chain B, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 223
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 171 SYADNANALKAQLDQQKNVVN----NLVSNTRLLESKIQEARSKKDTLKARAQS-AKTAT 225
SY +A+ + +L Q K V+N NL+ LL+ + ++ ++ + R A T
Sbjct: 50 SYTKSASEINGKLRQNKGVINGFPSNLIKQVELLDKSFNKMKTPENIMLFRGDDPAYLGT 109
Query: 226 KVSEMLGNVNTSSALSAFEKMEEKVL 251
+ L N N + +AFEK + K L
Sbjct: 110 EFQNTLLNSNGTINKTAFEKAKAKFL 135
>pdb|1G24|A Chain A, The Crystal Structure Of Exoenzyme C3 From Clostridium
Botulinum
pdb|1G24|B Chain B, The Crystal Structure Of Exoenzyme C3 From Clostridium
Botulinum
pdb|1G24|C Chain C, The Crystal Structure Of Exoenzyme C3 From Clostridium
Botulinum
pdb|1G24|D Chain D, The Crystal Structure Of Exoenzyme C3 From Clostridium
Botulinum
pdb|1GZF|A Chain A, Structure Of The Clostridium Botulinum C3 Exoenzyme (Wild-
Type) In Complex With Nad
pdb|1GZF|B Chain B, Structure Of The Clostridium Botulinum C3 Exoenzyme (Wild-
Type) In Complex With Nad
pdb|1GZF|C Chain C, Structure Of The Clostridium Botulinum C3 Exoenzyme (Wild-
Type) In Complex With Nad
pdb|1GZF|D Chain D, Structure Of The Clostridium Botulinum C3 Exoenzyme (Wild-
Type) In Complex With Nad
pdb|1UZI|A Chain A, C3 Exoenzyme From Clostridium Botulinum, Tetragonal Form
pdb|1UZI|B Chain B, C3 Exoenzyme From Clostridium Botulinum, Tetragonal Form
pdb|2C89|A Chain A, Structure Of The Wild-Type C3bot1 Exoenzyme (Free State,
Crystal Form I)
pdb|2C89|B Chain B, Structure Of The Wild-Type C3bot1 Exoenzyme (Free State,
Crystal Form I)
pdb|2C89|C Chain C, Structure Of The Wild-Type C3bot1 Exoenzyme (Free State,
Crystal Form I)
pdb|2C89|D Chain D, Structure Of The Wild-Type C3bot1 Exoenzyme (Free State,
Crystal Form I)
pdb|2C8A|A Chain A, Structure Of The Wild-Type C3bot1 Exoenzyme (Nicotinamide-
Bound State, Crystal Form I)
pdb|2C8A|B Chain B, Structure Of The Wild-Type C3bot1 Exoenzyme (Nicotinamide-
Bound State, Crystal Form I)
pdb|2C8A|C Chain C, Structure Of The Wild-Type C3bot1 Exoenzyme (Nicotinamide-
Bound State, Crystal Form I)
pdb|2C8A|D Chain D, Structure Of The Wild-Type C3bot1 Exoenzyme (Nicotinamide-
Bound State, Crystal Form I)
Length = 211
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 171 SYADNANALKAQLDQQKNVVN----NLVSNTRLLESKIQEARSKKDTLKARAQS-AKTAT 225
SY +A+ + +L Q K V+N NL+ LL+ + ++ ++ + R A T
Sbjct: 38 SYTKSASEINGKLRQNKGVINGFPSNLIKQVELLDKSFNKMKTPENIMLFRGDDPAYLGT 97
Query: 226 KVSEMLGNVNTSSALSAFEKMEEKVL 251
+ L N N + +AFEK + K L
Sbjct: 98 EFQNTLLNSNGTINKTAFEKAKAKFL 123
>pdb|2BOV|B Chain B, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 251
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 171 SYADNANALKAQLDQQKNVVN----NLVSNTRLLESKIQEARSKKDTLKARA-QSAKTAT 225
SY +A+ + +L Q K V+N NL+ LL+ + ++ ++ + R A T
Sbjct: 78 SYTKSASEINGKLRQNKGVINGFPSNLIKQVELLDKSFNKMKTPENIMLFRGDDPAYLGT 137
Query: 226 KVSEMLGNVNTSSALSAFEKMEEKVL 251
+ L N N + +AFEK + K L
Sbjct: 138 EFQNTLLNSNGTINKTAFEKAKAKFL 163
>pdb|2C8B|X Chain X, Structure Of The Artt Motif Q212a Mutant C3bot1 Exoenzyme
( Free State, Crystal Form Ii)
pdb|2C8C|A Chain A, Structure Of The Artt Motif Q212a Mutant C3bot1 Exoenzyme
(Nad-Bound State, Crystal Form I)
pdb|2C8C|B Chain B, Structure Of The Artt Motif Q212a Mutant C3bot1 Exoenzyme
(Nad-Bound State, Crystal Form I)
pdb|2C8C|C Chain C, Structure Of The Artt Motif Q212a Mutant C3bot1 Exoenzyme
(Nad-Bound State, Crystal Form I)
pdb|2C8C|D Chain D, Structure Of The Artt Motif Q212a Mutant C3bot1 Exoenzyme
(Nad-Bound State, Crystal Form I)
pdb|2C8D|A Chain A, Structure Of The Artt Motif Q212a Mutant C3bot1 Exoenzyme
(Free State, Crystal Form I)
pdb|2C8D|B Chain B, Structure Of The Artt Motif Q212a Mutant C3bot1 Exoenzyme
(Free State, Crystal Form I)
pdb|2C8D|C Chain C, Structure Of The Artt Motif Q212a Mutant C3bot1 Exoenzyme
(Free State, Crystal Form I)
pdb|2C8D|D Chain D, Structure Of The Artt Motif Q212a Mutant C3bot1 Exoenzyme
(Free State, Crystal Form I)
Length = 211
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 171 SYADNANALKAQLDQQKNVVN----NLVSNTRLLESKIQEARSKKDTLKARAQS-AKTAT 225
SY +A+ + +L Q K V+N NL+ LL+ + ++ ++ + R A T
Sbjct: 38 SYTKSASEINGKLRQNKGVINGFPSNLIKQVELLDKSFNKMKTPENIMLFRGDDPAYLGT 97
Query: 226 KVSEMLGNVNTSSALSAFEKMEEKVL 251
+ L N N + +AFEK + K L
Sbjct: 98 EFQNTLLNSNGTINKTAFEKAKAKFL 123
>pdb|2C8G|A Chain A, Structure Of The Pn Loop Q182a Mutant C3bot1 Exoenzyme
(Free State, Crystal Form I)
pdb|2C8G|B Chain B, Structure Of The Pn Loop Q182a Mutant C3bot1 Exoenzyme
(Free State, Crystal Form I)
pdb|2C8G|C Chain C, Structure Of The Pn Loop Q182a Mutant C3bot1 Exoenzyme
(Free State, Crystal Form I)
pdb|2C8G|D Chain D, Structure Of The Pn Loop Q182a Mutant C3bot1 Exoenzyme
(Free State, Crystal Form I)
pdb|2C8H|A Chain A, Structure Of The Pn Loop Q182a Mutant C3bot1 Exoenzyme
(Nad- Bound State, Crystal Form I)
pdb|2C8H|B Chain B, Structure Of The Pn Loop Q182a Mutant C3bot1 Exoenzyme
(Nad- Bound State, Crystal Form I)
pdb|2C8H|C Chain C, Structure Of The Pn Loop Q182a Mutant C3bot1 Exoenzyme
(Nad- Bound State, Crystal Form I)
pdb|2C8H|D Chain D, Structure Of The Pn Loop Q182a Mutant C3bot1 Exoenzyme
(Nad- Bound State, Crystal Form I)
Length = 211
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 171 SYADNANALKAQLDQQKNVVN----NLVSNTRLLESKIQEARSKKDTLKARAQS-AKTAT 225
SY +A+ + +L Q K V+N NL+ LL+ + ++ ++ + R A T
Sbjct: 38 SYTKSASEINGKLRQNKGVINGFPSNLIKQVELLDKSFNKMKTPENIMLFRGDDPAYLGT 97
Query: 226 KVSEMLGNVNTSSALSAFEKMEEKVL 251
+ L N N + +AFEK + K L
Sbjct: 98 EFQNTLLNSNGTINKTAFEKAKAKFL 123
>pdb|2C8E|E Chain E, Structure Of The Artt Motif E214n Mutant C3bot1 Exoenzyme
(Free State, Crystal Form Iii)
pdb|2C8E|F Chain F, Structure Of The Artt Motif E214n Mutant C3bot1 Exoenzyme
(Free State, Crystal Form Iii)
pdb|2C8E|G Chain G, Structure Of The Artt Motif E214n Mutant C3bot1 Exoenzyme
(Free State, Crystal Form Iii)
pdb|2C8F|E Chain E, Structure Of The Artt Motif E214n Mutant C3bot1 Exoenzyme
(Nad-Bound State, Crystal Form Iii)
pdb|2C8F|F Chain F, Structure Of The Artt Motif E214n Mutant C3bot1 Exoenzyme
(Nad-Bound State, Crystal Form Iii)
pdb|2C8F|G Chain G, Structure Of The Artt Motif E214n Mutant C3bot1 Exoenzyme
(Nad-Bound State, Crystal Form Iii)
Length = 211
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 171 SYADNANALKAQLDQQKNVVN----NLVSNTRLLESKIQEARSKKDTLKARAQS-AKTAT 225
SY +A+ + +L Q K V+N NL+ LL+ + ++ ++ + R A T
Sbjct: 38 SYTKSASEINGKLRQNKGVINGFPSNLIKQVELLDKSFNKMKTPENIMLFRGDDPAYLGT 97
Query: 226 KVSEMLGNVNTSSALSAFEKMEEKVL 251
+ L N N + +AFEK + K L
Sbjct: 98 EFQNTLLNSNGTINKTAFEKAKAKFL 123
>pdb|4I4T|F Chain F, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I50|F Chain F, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4I55|F Chain F, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4IIJ|F Chain F, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
pdb|4IHJ|F Chain F, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
Length = 384
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 68/160 (42%), Gaps = 21/160 (13%)
Query: 148 RKAQLA-LQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKI-- 204
RKA L L K +L+ +SY LK + +N + +L++NTR E ++
Sbjct: 73 RKASLVKLIKTSPELSESCTWFPESYVIYPTNLKTPVAPAQNGIRHLINNTRTDEREVFL 132
Query: 205 ------QEARSK-----KDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTM 253
+E R K + A+ + +++ SE+L ++ + +K EK L +
Sbjct: 133 AAYNRRREGREGNVWIAKSSAGAKGEGILISSEASELLDFIDEQGQVHVIQKYLEKPLLL 192
Query: 254 ES---QADSLNQLTTDDLEGKF----ALLETSSVDDDLAN 286
E + D + + D L + +L TSS + AN
Sbjct: 193 EPGHRKFDIRSWVLVDHLYNIYLYREGVLRTSSEPYNSAN 232
>pdb|2Q9F|A Chain A, Crystal Structure Of Human Cytochrome P450 46a1 In Complex
With Cholesterol-3-Sulphate
pdb|2Q9G|A Chain A, Crystal Structure Of Human Cytochrome P450 46a1
pdb|3MDM|A Chain A, Thioperamide Complex Of Cytochrome P450 46a1
pdb|3MDR|A Chain A, Tranylcypromine Complex Of Cytochrome P450 46a1
pdb|3MDR|B Chain B, Tranylcypromine Complex Of Cytochrome P450 46a1
pdb|3MDT|A Chain A, Voriconazole Complex Of Cytochrome P450 46a1
pdb|3MDT|B Chain B, Voriconazole Complex Of Cytochrome P450 46a1
pdb|3MDV|A Chain A, Clotrimazole Complex Of Cytochrome P450 46a1
pdb|3MDV|B Chain B, Clotrimazole Complex Of Cytochrome P450 46a1
pdb|4ENH|A Chain A, Crystal Structure Of Human Cytochrome P450 Cyp46a1 With
Fluvoxamine Bound
pdb|4FIA|A Chain A, Crystal Structure Of Human Cyp46a1 P450 With Bicalutamide
Bound
Length = 456
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 7/86 (8%)
Query: 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKR----LENKCKAAEQASEDWYRKAQLALQK 156
+K L QAV M + + R A+ L +++ + + Q DW ++ + AL++
Sbjct: 160 QKPLSQAVKLMLEGITASRNTLAKFLPGKRKQLREVRESIRFLRQVGRDWVQRRREALKR 219
Query: 157 GEE---DLAREALKRRKSYADNANAL 179
GEE D+ + LK + D+ L
Sbjct: 220 GEEVPADILTQILKAEEGAQDDEGLL 245
>pdb|3VOF|A Chain A, Cellobiohydrolase Mutant, Cccel6c D102a, In The Closed
Form
Length = 395
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 244 EKMEEKVLTMESQADSLNQLTTDDLEG--KFALLETSSVDDDL 284
EK+EE + E+Q D LN T ++G FA + S+ D +
Sbjct: 29 EKLEETIAYFEAQGDELNAARTRTVQGIPTFAWISDSATIDTI 71
>pdb|3A64|A Chain A, Crystal Structure Of Cccel6c, A Glycoside Hydrolase Family
6 Enzyme, From Coprinopsis Cinerea
pdb|3A9B|A Chain A, Cccel6c, A Glycoside Hydrolase Family 6 Enzyme, Complexed
With Cellobiose
pdb|3ABX|A Chain A, Cccel6c, A Glycoside Hydrolase Family 6 Enzyme, Complexed
With P-Nitrophenyl Beta-D-Cellotrioside
Length = 395
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 244 EKMEEKVLTMESQADSLNQLTTDDLEG--KFALLETSSVDDDL 284
EK+EE + E+Q D LN T ++G FA + S+ D +
Sbjct: 29 EKLEETIAYFEAQGDELNAARTRTVQGIPTFAWISDSATIDTI 71
>pdb|1U6G|A Chain A, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
Length = 776
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 57 APSSRSHCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEM 111
P S+S + GGA + L+ RL +K+Y +L +D E +++++VL+
Sbjct: 67 VPPSKSKKGQTPGGAQFVGLELYKRLKEFLKNYLTNLL---KDGEDLMDESVLKF 118
>pdb|1LDJ|A Chain A, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 760
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 57 APSSRSHCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEM 111
P S+S + GGA + L+ RL +K+Y +L +D E +++++VL+
Sbjct: 51 VPPSKSKKGQTPGGAQFVGLELYKRLKEFLKNYLTNLL---KDGEDLMDESVLKF 102
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.124 0.329
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,118,871
Number of Sequences: 62578
Number of extensions: 225784
Number of successful extensions: 707
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 696
Number of HSP's gapped (non-prelim): 47
length of query: 335
length of database: 14,973,337
effective HSP length: 99
effective length of query: 236
effective length of database: 8,778,115
effective search space: 2071635140
effective search space used: 2071635140
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)