Query 019853
Match_columns 335
No_of_seqs 160 out of 814
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 05:03:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019853.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019853hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10698 phage shock protein P 100.0 3.7E-47 8.1E-52 350.8 31.7 219 76-294 1-220 (222)
2 TIGR02977 phageshock_pspA phag 100.0 1.9E-45 4.1E-50 338.7 31.4 218 76-293 1-219 (219)
3 COG1842 PspA Phage shock prote 100.0 1.3E-42 2.8E-47 320.3 31.3 218 76-293 1-222 (225)
4 PF04012 PspA_IM30: PspA/IM30 100.0 2E-42 4.2E-47 317.9 31.0 216 77-292 1-220 (221)
5 PTZ00446 vacuolar sorting prot 98.7 4.4E-06 9.5E-11 75.9 19.8 146 125-284 32-182 (191)
6 KOG1656 Protein involved in gl 98.4 0.00015 3.2E-09 66.0 21.0 113 158-284 59-178 (221)
7 PF03357 Snf7: Snf7; InterPro 98.2 7.2E-05 1.6E-09 65.4 15.2 156 121-295 2-157 (171)
8 PTZ00464 SNF-7-like protein; P 98.2 0.00076 1.6E-08 62.4 22.3 114 159-293 60-175 (211)
9 KOG2911 Uncharacterized conser 98.0 0.00071 1.5E-08 67.8 19.8 191 115-331 228-422 (439)
10 TIGR02977 phageshock_pspA phag 97.8 0.0073 1.6E-07 55.9 21.4 182 110-333 28-218 (219)
11 KOG3230 Vacuolar assembly/sort 97.6 0.038 8.2E-07 50.3 21.5 200 95-330 5-223 (224)
12 COG1842 PspA Phage shock prote 97.4 0.12 2.6E-06 48.4 23.5 170 109-289 27-205 (225)
13 PRK10698 phage shock protein P 97.3 0.06 1.3E-06 50.1 20.7 120 177-333 95-218 (222)
14 PF04012 PspA_IM30: PspA/IM30 97.3 0.044 9.5E-07 50.3 19.0 122 109-235 26-152 (221)
15 KOG2910 Uncharacterized conser 97.1 0.19 4.1E-06 45.7 21.3 74 120-193 16-89 (209)
16 KOG0996 Structural maintenance 97.0 0.14 2.9E-06 57.3 22.3 146 104-262 804-963 (1293)
17 PRK04863 mukB cell division pr 96.7 0.52 1.1E-05 54.9 24.7 135 78-215 258-396 (1486)
18 TIGR00606 rad50 rad50. This fa 96.3 0.94 2E-05 52.3 23.5 57 165-221 879-935 (1311)
19 PF08317 Spc7: Spc7 kinetochor 96.2 0.55 1.2E-05 46.0 18.3 139 104-257 154-292 (325)
20 PRK09039 hypothetical protein; 96.1 1 2.3E-05 44.5 19.9 46 176-221 139-184 (343)
21 PF00261 Tropomyosin: Tropomyo 96.0 0.46 1E-05 44.4 16.3 36 103-138 19-54 (237)
22 PRK09039 hypothetical protein; 95.9 1.5 3.3E-05 43.4 20.0 53 167-219 116-168 (343)
23 TIGR02169 SMC_prok_A chromosom 95.8 1.3 2.7E-05 49.6 21.4 18 317-334 952-969 (1164)
24 COG1196 Smc Chromosome segrega 95.6 4.2 9.1E-05 46.5 24.9 28 122-149 795-822 (1163)
25 PRK02224 chromosome segregatio 95.5 5.1 0.00011 44.0 25.2 93 119-217 529-621 (880)
26 PRK04863 mukB cell division pr 95.5 3.4 7.3E-05 48.4 23.4 94 125-219 291-386 (1486)
27 TIGR02169 SMC_prok_A chromosom 95.4 4.1 8.8E-05 45.6 23.7 11 104-114 270-280 (1164)
28 PF00261 Tropomyosin: Tropomyo 95.3 2.6 5.6E-05 39.4 20.9 120 94-218 45-164 (237)
29 PF09726 Macoilin: Transmembra 95.1 2.1 4.5E-05 46.4 19.3 59 235-293 588-654 (697)
30 PF08317 Spc7: Spc7 kinetochor 95.1 2.4 5.3E-05 41.5 18.3 47 102-148 145-191 (325)
31 KOG0250 DNA repair protein RAD 95.1 7.6 0.00016 43.7 25.8 108 101-212 677-786 (1074)
32 COG4372 Uncharacterized protei 95.0 4.5 9.8E-05 40.8 23.1 26 239-264 264-289 (499)
33 KOG0994 Extracellular matrix g 95.0 8.6 0.00019 43.8 26.1 128 72-211 1502-1635(1758)
34 COG1196 Smc Chromosome segrega 95.0 8.9 0.00019 43.9 25.3 14 320-333 946-959 (1163)
35 KOG0994 Extracellular matrix g 94.9 2.7 5.9E-05 47.5 19.3 81 101-193 1565-1645(1758)
36 KOG0971 Microtubule-associated 94.9 7.8 0.00017 43.0 25.9 160 74-257 225-384 (1243)
37 KOG3232 Vacuolar assembly/sort 94.6 3.3 7.2E-05 37.3 21.6 117 121-262 10-137 (203)
38 KOG1655 Protein involved in va 94.6 2.4 5.3E-05 38.8 15.3 23 161-183 64-86 (218)
39 PRK02224 chromosome segregatio 94.5 6.8 0.00015 43.0 21.7 11 77-87 468-478 (880)
40 KOG3231 Predicted assembly/vac 94.4 3.5 7.7E-05 36.9 18.6 192 106-329 11-207 (208)
41 PRK11637 AmiB activator; Provi 94.4 6.4 0.00014 39.8 22.4 41 104-144 80-120 (428)
42 KOG0161 Myosin class II heavy 94.3 8 0.00017 46.3 22.6 50 104-153 962-1011(1930)
43 PF12128 DUF3584: Protein of u 94.3 10 0.00022 43.6 23.3 16 104-119 605-620 (1201)
44 PF12128 DUF3584: Protein of u 94.2 13 0.00029 42.7 23.8 59 101-159 623-681 (1201)
45 PRK11637 AmiB activator; Provi 94.1 5.2 0.00011 40.5 18.6 34 176-209 91-124 (428)
46 smart00787 Spc7 Spc7 kinetocho 93.9 6.3 0.00014 38.6 18.0 137 104-255 149-285 (312)
47 KOG0161 Myosin class II heavy 93.8 8.4 0.00018 46.2 21.3 15 279-293 1129-1143(1930)
48 PHA02562 46 endonuclease subun 93.7 7.5 0.00016 40.2 19.2 22 240-261 298-319 (562)
49 KOG3229 Vacuolar sorting prote 93.6 6 0.00013 36.6 19.9 72 128-199 26-97 (227)
50 PF06160 EzrA: Septation ring 93.5 4.2 9E-05 42.9 17.0 193 122-334 55-263 (560)
51 PF12718 Tropomyosin_1: Tropom 93.4 5 0.00011 34.9 18.7 105 99-212 14-118 (143)
52 PRK04778 septation ring format 93.3 13 0.00027 39.3 23.0 52 98-149 281-332 (569)
53 KOG0971 Microtubule-associated 93.2 17 0.00036 40.5 23.0 117 68-187 359-475 (1243)
54 smart00787 Spc7 Spc7 kinetocho 92.9 10 0.00022 37.2 17.7 21 165-185 177-197 (312)
55 PTZ00464 SNF-7-like protein; P 92.8 8.1 0.00018 35.8 19.0 18 315-332 156-173 (211)
56 KOG0996 Structural maintenance 92.8 18 0.00039 41.2 20.9 51 104-154 375-425 (1293)
57 PF10168 Nup88: Nuclear pore c 92.6 15 0.00032 40.1 19.9 146 77-223 504-667 (717)
58 KOG0963 Transcription factor/C 92.6 16 0.00035 38.8 19.8 104 107-210 122-225 (629)
59 COG1382 GimC Prefoldin, chaper 92.6 5.8 0.00013 33.6 13.6 101 107-214 7-110 (119)
60 PF11180 DUF2968: Protein of u 92.6 8.2 0.00018 35.3 15.7 112 80-203 72-183 (192)
61 TIGR03319 YmdA_YtgF conserved 92.5 4.6 0.0001 42.2 15.5 48 101-148 35-83 (514)
62 PRK04778 septation ring format 92.4 16 0.00035 38.5 25.6 14 280-293 453-466 (569)
63 PF06008 Laminin_I: Laminin Do 92.2 11 0.00023 35.7 17.8 46 104-149 92-142 (264)
64 PF12718 Tropomyosin_1: Tropom 92.1 7.5 0.00016 33.7 16.1 18 130-147 24-41 (143)
65 PRK12704 phosphodiesterase; Pr 92.0 7.6 0.00016 40.7 16.4 48 101-148 41-89 (520)
66 PRK10884 SH3 domain-containing 92.0 5.7 0.00012 36.7 13.8 56 179-234 123-178 (206)
67 KOG0977 Nuclear envelope prote 91.8 19 0.00042 37.9 23.6 97 114-210 93-191 (546)
68 PHA02562 46 endonuclease subun 91.7 18 0.00039 37.4 22.7 22 191-212 302-323 (562)
69 PF09730 BicD: Microtubule-ass 91.5 24 0.00053 38.5 20.1 118 94-216 274-394 (717)
70 KOG0804 Cytoplasmic Zn-finger 91.5 11 0.00025 38.6 16.2 44 98-141 331-375 (493)
71 TIGR02231 conserved hypothetic 91.2 2.4 5.2E-05 44.0 11.8 100 107-214 72-171 (525)
72 PF09726 Macoilin: Transmembra 91.2 26 0.00056 38.2 20.4 38 94-131 448-485 (697)
73 PRK03918 chromosome segregatio 91.0 28 0.0006 38.2 24.0 18 77-94 124-141 (880)
74 TIGR01843 type_I_hlyD type I s 90.7 18 0.00039 35.6 18.0 15 43-57 51-65 (423)
75 PF10498 IFT57: Intra-flagella 90.7 20 0.00042 36.0 17.4 134 116-259 216-353 (359)
76 PF00769 ERM: Ezrin/radixin/mo 90.5 16 0.00034 34.6 16.3 54 102-155 8-61 (246)
77 PF00038 Filament: Intermediat 90.4 17 0.00037 34.8 17.6 105 85-208 29-137 (312)
78 PF10174 Cast: RIM-binding pro 90.4 32 0.0007 37.9 20.8 122 91-221 230-355 (775)
79 KOG0250 DNA repair protein RAD 90.2 38 0.00082 38.4 20.6 105 106-214 337-441 (1074)
80 TIGR03007 pepcterm_ChnLen poly 90.1 24 0.00053 36.1 21.0 53 165-217 202-269 (498)
81 PF10168 Nup88: Nuclear pore c 90.0 8.3 0.00018 42.0 14.8 75 78-152 540-618 (717)
82 KOG0804 Cytoplasmic Zn-finger 89.7 13 0.00029 38.1 14.9 48 104-151 352-399 (493)
83 TIGR01005 eps_transp_fam exopo 89.3 18 0.0004 39.1 17.0 113 106-226 288-407 (754)
84 TIGR01843 type_I_hlyD type I s 89.3 23 0.00051 34.8 19.2 9 281-289 318-326 (423)
85 COG1579 Zn-ribbon protein, pos 89.0 21 0.00045 33.8 19.6 114 89-215 14-130 (239)
86 KOG0977 Nuclear envelope prote 88.9 28 0.00062 36.7 17.1 17 279-295 374-390 (546)
87 PF13166 AAA_13: AAA domain 88.9 29 0.00064 37.1 18.0 63 172-234 408-471 (712)
88 KOG0979 Structural maintenance 88.8 36 0.00078 38.3 18.4 143 109-258 184-328 (1072)
89 PRK15422 septal ring assembly 88.7 10 0.00022 29.8 10.5 61 96-156 15-75 (79)
90 PF06160 EzrA: Septation ring 88.5 36 0.00079 35.9 19.4 154 102-258 104-295 (560)
91 TIGR00606 rad50 rad50. This fa 88.2 58 0.0013 37.9 25.7 45 173-217 976-1020(1311)
92 PF03357 Snf7: Snf7; InterPro 88.2 4.1 9E-05 35.1 9.2 147 178-332 5-153 (171)
93 KOG0018 Structural maintenance 88.1 53 0.0011 37.3 23.6 271 42-334 618-940 (1141)
94 PF13514 AAA_27: AAA domain 88.0 55 0.0012 37.4 22.3 42 114-155 674-715 (1111)
95 KOG0249 LAR-interacting protei 87.9 12 0.00025 40.7 13.6 45 164-208 213-257 (916)
96 KOG1029 Endocytic adaptor prot 87.8 42 0.0009 37.0 17.6 31 186-216 428-458 (1118)
97 TIGR03752 conj_TIGR03752 integ 87.7 7.8 0.00017 40.0 12.0 52 107-158 60-111 (472)
98 PF11932 DUF3450: Protein of u 87.4 19 0.0004 33.8 13.7 38 172-209 61-98 (251)
99 KOG0980 Actin-binding protein 87.2 54 0.0012 36.5 22.1 10 281-290 539-548 (980)
100 PRK03918 chromosome segregatio 87.0 52 0.0011 36.1 20.6 29 173-201 672-700 (880)
101 TIGR03017 EpsF chain length de 86.9 34 0.00073 34.4 16.1 27 197-223 344-370 (444)
102 PF13851 GAS: Growth-arrest sp 86.3 27 0.00058 32.0 24.0 127 79-221 7-133 (201)
103 COG1579 Zn-ribbon protein, pos 86.2 31 0.00067 32.7 19.2 106 104-212 36-141 (239)
104 PF12325 TMF_TATA_bd: TATA ele 86.0 20 0.00044 30.3 15.0 43 104-146 21-63 (120)
105 COG4372 Uncharacterized protei 85.8 43 0.00094 34.0 20.1 51 169-219 160-210 (499)
106 KOG0982 Centrosomal protein Nu 85.7 46 0.00099 34.2 22.2 96 122-217 245-347 (502)
107 PRK10869 recombination and rep 85.6 52 0.0011 34.7 20.1 80 104-186 155-234 (553)
108 PRK09343 prefoldin subunit bet 85.5 21 0.00045 30.0 13.2 105 104-215 5-112 (121)
109 TIGR00634 recN DNA repair prot 85.5 52 0.0011 34.6 21.3 76 104-182 159-234 (563)
110 PF13514 AAA_27: AAA domain 84.7 80 0.0017 36.1 24.3 93 124-216 740-836 (1111)
111 PF10481 CENP-F_N: Cenp-F N-te 84.5 31 0.00068 33.4 13.4 118 159-295 10-129 (307)
112 COG3074 Uncharacterized protei 84.2 17 0.00037 28.0 10.2 61 96-156 15-75 (79)
113 PF08614 ATG16: Autophagy prot 84.1 19 0.00042 32.5 11.7 49 169-217 132-180 (194)
114 COG1566 EmrA Multidrug resista 83.9 36 0.00077 34.1 14.3 39 110-148 88-126 (352)
115 TIGR03185 DNA_S_dndD DNA sulfu 83.8 66 0.0014 34.5 18.9 80 131-213 395-474 (650)
116 PF10046 BLOC1_2: Biogenesis o 83.8 22 0.00047 28.8 13.2 95 78-206 4-98 (99)
117 PRK11281 hypothetical protein; 83.1 32 0.00069 39.5 15.1 31 101-131 58-88 (1113)
118 PF06785 UPF0242: Uncharacteri 82.8 30 0.00065 34.4 12.8 56 161-216 167-222 (401)
119 PF03194 LUC7: LUC7 N_terminus 82.7 15 0.00032 35.0 10.7 82 100-181 84-170 (254)
120 TIGR01010 BexC_CtrB_KpsE polys 82.4 53 0.0011 32.3 17.6 71 81-153 113-196 (362)
121 PF05701 WEMBL: Weak chloropla 82.2 69 0.0015 33.5 19.6 42 180-221 392-433 (522)
122 PF03148 Tektin: Tektin family 82.1 59 0.0013 32.7 17.8 128 79-206 224-363 (384)
123 PF05384 DegS: Sensor protein 82.0 36 0.00079 30.2 17.8 94 104-201 25-118 (159)
124 KOG2911 Uncharacterized conser 82.0 65 0.0014 33.1 15.5 48 279-331 338-385 (439)
125 KOG2685 Cystoskeletal protein 81.7 65 0.0014 32.9 15.6 127 78-204 250-388 (421)
126 PF05816 TelA: Toxic anion res 81.6 56 0.0012 32.1 16.3 49 77-125 73-121 (333)
127 PF06637 PV-1: PV-1 protein (P 81.1 48 0.001 33.5 13.7 21 118-138 290-310 (442)
128 PRK07720 fliJ flagellar biosyn 80.8 34 0.00075 29.2 16.6 95 112-212 15-109 (146)
129 KOG0976 Rho/Rac1-interacting s 80.6 1E+02 0.0022 34.4 23.4 23 199-221 414-436 (1265)
130 PF06120 Phage_HK97_TLTM: Tail 80.4 61 0.0013 31.8 20.6 104 111-215 72-175 (301)
131 COG2433 Uncharacterized conser 80.4 71 0.0015 34.2 15.3 102 118-221 343-462 (652)
132 TIGR03007 pepcterm_ChnLen poly 80.4 73 0.0016 32.6 15.9 24 103-126 208-231 (498)
133 PF04111 APG6: Autophagy prote 80.1 61 0.0013 31.7 14.2 44 178-221 82-125 (314)
134 PRK00409 recombination and DNA 80.1 63 0.0014 35.7 15.7 46 104-149 518-563 (782)
135 PRK05689 fliJ flagellar biosyn 79.8 37 0.0008 28.9 16.4 97 110-212 13-109 (147)
136 smart00685 DM14 Repeats in fly 79.8 9.3 0.0002 28.5 6.4 44 137-180 2-45 (59)
137 PLN02718 Probable galacturonos 79.8 9.7 0.00021 40.5 9.0 108 99-210 158-265 (603)
138 KOG0933 Structural maintenance 79.3 1.2E+02 0.0026 34.5 19.2 20 238-257 962-981 (1174)
139 PRK10476 multidrug resistance 78.3 69 0.0015 31.1 15.1 17 107-123 87-103 (346)
140 CHL00118 atpG ATP synthase CF0 78.2 45 0.00098 29.0 14.3 55 99-153 45-100 (156)
141 TIGR03545 conserved hypothetic 78.2 30 0.00065 36.7 12.1 58 94-152 145-202 (555)
142 TIGR01005 eps_transp_fam exopo 78.2 1.1E+02 0.0023 33.3 18.7 27 101-127 196-222 (754)
143 COG3883 Uncharacterized protei 78.1 67 0.0015 30.9 20.4 60 99-158 52-115 (265)
144 PRK13729 conjugal transfer pil 77.9 9.2 0.0002 39.6 8.0 49 172-220 74-122 (475)
145 KOG0978 E3 ubiquitin ligase in 77.8 1.1E+02 0.0024 33.3 24.7 138 161-299 483-625 (698)
146 PRK00846 hypothetical protein; 77.6 24 0.00051 27.7 8.4 52 170-221 9-60 (77)
147 PF07926 TPR_MLP1_2: TPR/MLP1/ 77.2 44 0.00096 28.3 16.7 17 200-216 103-119 (132)
148 KOG0964 Structural maintenance 77.2 81 0.0018 35.7 15.1 32 175-206 343-374 (1200)
149 PRK08476 F0F1 ATP synthase sub 76.8 47 0.001 28.5 14.2 47 102-148 34-80 (141)
150 KOG1003 Actin filament-coating 76.7 63 0.0014 29.8 14.2 47 104-150 107-153 (205)
151 PF07888 CALCOCO1: Calcium bin 76.5 1.1E+02 0.0024 32.5 21.4 32 173-204 205-236 (546)
152 PF04102 SlyX: SlyX; InterPro 76.4 20 0.00042 27.2 7.6 48 173-220 3-50 (69)
153 PRK04406 hypothetical protein; 75.8 31 0.00067 26.8 8.7 49 171-219 8-56 (75)
154 COG3206 GumC Uncharacterized p 75.7 97 0.0021 31.5 16.0 118 104-225 283-403 (458)
155 PF06810 Phage_GP20: Phage min 75.7 35 0.00076 30.0 10.1 53 173-225 26-81 (155)
156 COG4942 Membrane-bound metallo 75.6 1E+02 0.0022 31.7 20.6 111 94-212 136-248 (420)
157 PRK00736 hypothetical protein; 75.3 25 0.00055 26.7 7.9 48 173-220 4-51 (68)
158 PF04156 IncA: IncA protein; 75.1 60 0.0013 28.8 15.1 6 179-184 135-140 (191)
159 KOG0978 E3 ubiquitin ligase in 75.0 1.3E+02 0.0029 32.8 16.5 49 102-150 492-540 (698)
160 PRK00295 hypothetical protein; 75.0 26 0.00057 26.6 7.9 47 173-219 4-50 (68)
161 PF04102 SlyX: SlyX; InterPro 75.0 18 0.00039 27.4 7.1 48 168-215 5-52 (69)
162 PF07888 CALCOCO1: Calcium bin 75.0 1.2E+02 0.0026 32.2 18.9 13 282-294 445-457 (546)
163 smart00502 BBC B-Box C-termina 74.7 42 0.00091 26.9 14.8 58 104-161 5-62 (127)
164 PRK06975 bifunctional uroporph 74.6 88 0.0019 33.8 14.7 84 161-254 372-458 (656)
165 PF06120 Phage_HK97_TLTM: Tail 74.6 90 0.002 30.6 14.7 41 102-142 70-110 (301)
166 cd00632 Prefoldin_beta Prefold 74.2 45 0.00098 27.0 13.0 95 113-214 6-103 (105)
167 PRK10884 SH3 domain-containing 74.2 73 0.0016 29.4 13.1 18 108-125 95-112 (206)
168 PRK03947 prefoldin subunit alp 74.1 54 0.0012 27.8 13.9 43 105-147 5-47 (140)
169 PF10191 COG7: Golgi complex c 74.0 1.5E+02 0.0032 32.8 19.3 32 115-146 65-96 (766)
170 TIGR03017 EpsF chain length de 73.9 1E+02 0.0022 31.0 14.3 28 101-128 249-276 (444)
171 PRK00295 hypothetical protein; 73.9 34 0.00075 25.9 8.3 47 168-214 6-52 (68)
172 PF05103 DivIVA: DivIVA protei 73.8 1.1 2.3E-05 37.5 0.1 50 104-153 23-72 (131)
173 PF10186 Atg14: UV radiation r 73.7 79 0.0017 29.6 16.5 38 172-209 68-105 (302)
174 PRK02793 phi X174 lysis protei 73.7 28 0.00061 26.7 7.9 47 172-218 6-52 (72)
175 PF05103 DivIVA: DivIVA protei 73.7 2.2 4.7E-05 35.6 1.9 65 88-152 21-85 (131)
176 PRK04325 hypothetical protein; 73.6 35 0.00076 26.3 8.5 49 172-220 7-55 (74)
177 PRK13454 F0F1 ATP synthase sub 73.3 69 0.0015 28.7 14.3 56 99-154 54-110 (181)
178 TIGR01000 bacteriocin_acc bact 73.0 1.1E+02 0.0025 31.1 17.8 28 124-151 169-196 (457)
179 PF04111 APG6: Autophagy prote 72.6 1E+02 0.0022 30.2 14.8 38 178-215 96-133 (314)
180 PF05667 DUF812: Protein of un 72.3 1.4E+02 0.0031 31.9 19.1 43 104-146 326-368 (594)
181 PLN02829 Probable galacturonos 72.3 20 0.00044 38.3 9.0 106 101-210 178-283 (639)
182 TIGR02971 heterocyst_DevB ABC 72.2 94 0.002 29.8 15.5 19 40-58 21-39 (327)
183 COG3883 Uncharacterized protei 72.1 67 0.0015 30.9 11.7 14 210-223 99-112 (265)
184 PRK04406 hypothetical protein; 72.0 32 0.00068 26.7 7.9 49 167-215 11-59 (75)
185 PF15619 Lebercilin: Ciliary p 71.9 80 0.0017 28.8 21.3 112 82-197 37-148 (194)
186 PRK02793 phi X174 lysis protei 71.8 40 0.00086 25.9 8.3 49 167-215 8-56 (72)
187 TIGR02231 conserved hypothetic 71.7 47 0.001 34.5 11.6 100 111-218 69-168 (525)
188 PLN02742 Probable galacturonos 71.5 40 0.00086 35.5 10.7 105 104-210 72-176 (534)
189 COG4942 Membrane-bound metallo 71.5 1.3E+02 0.0028 31.0 22.6 49 99-147 59-107 (420)
190 PF14662 CCDC155: Coiled-coil 71.4 84 0.0018 28.9 15.8 44 172-215 93-136 (193)
191 PF01576 Myosin_tail_1: Myosin 71.4 1.3 2.8E-05 49.1 0.0 138 77-218 232-372 (859)
192 PRK00736 hypothetical protein; 71.2 36 0.00078 25.8 7.9 47 168-214 6-52 (68)
193 PRK02119 hypothetical protein; 70.9 35 0.00076 26.3 7.9 48 171-218 6-53 (73)
194 PF08826 DMPK_coil: DMPK coile 70.9 42 0.0009 25.1 8.6 46 170-215 14-59 (61)
195 PRK02119 hypothetical protein; 70.9 46 0.00099 25.6 8.5 48 167-214 9-56 (73)
196 PRK09174 F0F1 ATP synthase sub 70.8 86 0.0019 28.8 14.4 106 78-185 74-182 (204)
197 PF02841 GBP_C: Guanylate-bind 70.6 1E+02 0.0022 29.6 19.9 44 62-110 141-184 (297)
198 PF09304 Cortex-I_coil: Cortex 70.3 63 0.0014 27.0 14.5 54 166-219 36-89 (107)
199 PRK15136 multidrug efflux syst 70.1 1.2E+02 0.0027 30.2 14.8 14 160-173 137-150 (390)
200 PF10234 Cluap1: Clusterin-ass 70.1 1.1E+02 0.0023 29.6 15.6 58 101-159 164-221 (267)
201 PRK04325 hypothetical protein; 69.6 39 0.00085 26.0 7.9 47 168-214 10-56 (74)
202 KOG4643 Uncharacterized coiled 69.4 1.7E+02 0.0038 33.3 15.3 50 165-214 276-327 (1195)
203 PF09731 Mitofilin: Mitochondr 69.3 1.5E+02 0.0033 31.1 22.2 25 103-127 248-272 (582)
204 TIGR02338 gimC_beta prefoldin, 69.3 62 0.0013 26.5 13.9 100 108-214 5-107 (110)
205 KOG0946 ER-Golgi vesicle-tethe 69.3 1.6E+02 0.0036 32.7 14.9 148 112-259 736-887 (970)
206 TIGR02132 phaR_Bmeg polyhydrox 69.1 91 0.002 28.4 18.3 119 95-214 4-133 (189)
207 KOG4674 Uncharacterized conser 68.6 2.8E+02 0.006 33.8 20.4 48 109-156 1246-1300(1822)
208 PRK09841 cryptic autophosphory 68.4 1.8E+02 0.004 31.6 17.3 56 130-185 270-329 (726)
209 TIGR02680 conserved hypothetic 68.1 2.5E+02 0.0055 33.1 25.0 43 174-216 340-382 (1353)
210 PF05529 Bap31: B-cell recepto 68.1 61 0.0013 29.0 10.2 33 170-202 157-189 (192)
211 KOG2391 Vacuolar sorting prote 68.0 1.4E+02 0.003 29.9 19.0 109 32-157 169-283 (365)
212 PF09789 DUF2353: Uncharacteri 67.9 1.3E+02 0.0028 29.8 12.9 118 102-235 68-185 (319)
213 PF00038 Filament: Intermediat 67.5 1.2E+02 0.0025 29.0 19.6 48 99-146 188-235 (312)
214 PRK11281 hypothetical protein; 67.2 2.4E+02 0.0053 32.6 18.7 41 102-142 124-164 (1113)
215 TIGR00998 8a0101 efflux pump m 67.2 1.2E+02 0.0026 29.0 16.3 11 110-120 84-94 (334)
216 COG4477 EzrA Negative regulato 67.1 1.8E+02 0.0038 30.9 16.8 59 235-293 191-266 (570)
217 PRK00846 hypothetical protein; 67.0 48 0.001 26.0 7.9 49 167-215 13-61 (77)
218 PF15254 CCDC14: Coiled-coil d 66.6 2.1E+02 0.0046 31.7 16.5 19 82-100 338-356 (861)
219 KOG0796 Spliceosome subunit [R 66.4 1.3E+02 0.0029 29.6 12.6 75 100-174 84-162 (319)
220 PF01576 Myosin_tail_1: Myosin 66.3 2.5 5.3E-05 46.9 0.8 143 75-217 603-765 (859)
221 TIGR02473 flagell_FliJ flagell 66.1 76 0.0017 26.3 20.1 99 108-212 8-106 (141)
222 PTZ00446 vacuolar sorting prot 65.9 1.1E+02 0.0024 28.1 14.9 36 216-251 105-140 (191)
223 PF15619 Lebercilin: Ciliary p 65.8 1.1E+02 0.0023 28.0 14.4 33 174-206 157-189 (194)
224 PLN02910 polygalacturonate 4-a 65.8 38 0.00082 36.4 9.3 106 101-210 192-297 (657)
225 PF08614 ATG16: Autophagy prot 65.5 76 0.0017 28.6 10.3 38 110-147 71-108 (194)
226 PF13094 CENP-Q: CENP-Q, a CEN 65.3 73 0.0016 27.7 9.8 47 112-158 47-93 (160)
227 COG2433 Uncharacterized conser 65.3 2E+02 0.0044 31.0 14.3 30 192-221 478-507 (652)
228 TIGR01069 mutS2 MutS2 family p 65.0 1.7E+02 0.0037 32.3 14.6 8 78-85 498-505 (771)
229 PF10883 DUF2681: Protein of u 64.8 49 0.0011 26.6 7.7 49 190-238 25-73 (87)
230 cd07664 BAR_SNX2 The Bin/Amphi 64.3 1.3E+02 0.0028 28.3 22.7 65 78-146 2-69 (234)
231 COG1561 Uncharacterized stress 64.1 1.5E+02 0.0032 29.0 17.6 72 173-253 211-289 (290)
232 PRK10803 tol-pal system protei 63.6 31 0.00066 32.9 7.6 37 178-214 58-94 (263)
233 COG0497 RecN ATPase involved i 63.4 2.1E+02 0.0046 30.5 22.5 65 92-159 143-207 (557)
234 PF06156 DUF972: Protein of un 63.3 32 0.00069 28.5 6.7 63 102-164 11-81 (107)
235 TIGR00293 prefoldin, archaeal 63.0 86 0.0019 25.9 9.6 9 131-139 24-32 (126)
236 PRK13169 DNA replication intia 62.7 37 0.00081 28.4 7.0 44 103-146 12-55 (110)
237 PF06008 Laminin_I: Laminin Do 62.5 1.4E+02 0.003 28.1 20.0 25 200-224 183-207 (264)
238 KOG4673 Transcription factor T 62.4 2.5E+02 0.0053 30.9 17.1 138 77-215 474-632 (961)
239 PF10174 Cast: RIM-binding pro 62.3 2.6E+02 0.0056 31.1 20.7 52 168-219 372-423 (775)
240 PF05010 TACC: Transforming ac 62.0 1.3E+02 0.0029 27.8 21.4 59 165-223 81-139 (207)
241 PF09730 BicD: Microtubule-ass 61.9 2.5E+02 0.0055 30.9 19.9 100 92-196 20-119 (717)
242 PRK08476 F0F1 ATP synthase sub 61.5 1E+02 0.0023 26.3 16.0 44 78-121 28-74 (141)
243 PF05377 FlaC_arch: Flagella a 61.4 37 0.0008 25.0 5.9 35 170-204 3-37 (55)
244 PF15070 GOLGA2L5: Putative go 61.3 2.4E+02 0.0052 30.4 19.1 45 100-144 23-67 (617)
245 PF05478 Prominin: Prominin; 61.1 2.7E+02 0.0058 30.9 19.2 117 98-217 172-289 (806)
246 PRK10929 putative mechanosensi 61.0 3.2E+02 0.0068 31.7 22.2 20 104-123 107-126 (1109)
247 PF11365 DUF3166: Protein of u 60.6 9.3 0.0002 31.2 3.0 64 268-334 20-87 (96)
248 KOG4302 Microtubule-associated 60.5 2.3E+02 0.005 30.8 14.1 69 90-158 23-92 (660)
249 PF13949 ALIX_LYPXL_bnd: ALIX 60.0 1.5E+02 0.0033 27.8 17.6 140 73-220 6-169 (296)
250 KOG0964 Structural maintenance 60.0 3.1E+02 0.0068 31.4 20.8 18 53-70 630-647 (1200)
251 PF07889 DUF1664: Protein of u 60.0 1.1E+02 0.0024 26.2 10.6 31 176-206 91-121 (126)
252 PF05335 DUF745: Protein of un 59.6 1.4E+02 0.0031 27.2 15.7 47 102-148 70-116 (188)
253 KOG1103 Predicted coiled-coil 59.5 2E+02 0.0044 29.0 15.8 97 99-210 86-182 (561)
254 PRK07352 F0F1 ATP synthase sub 59.4 1.3E+02 0.0027 26.6 19.4 82 68-158 11-95 (174)
255 PRK00409 recombination and DNA 59.1 2.9E+02 0.0062 30.6 16.9 35 100-134 500-534 (782)
256 PRK10803 tol-pal system protei 59.0 51 0.0011 31.3 8.3 46 170-215 57-102 (263)
257 PF05622 HOOK: HOOK protein; 58.8 3.2 6.9E-05 44.9 0.0 82 104-185 244-326 (713)
258 PF09789 DUF2353: Uncharacteri 58.8 1.9E+02 0.0042 28.6 12.3 22 238-259 130-151 (319)
259 PF09486 HrpB7: Bacterial type 58.5 1.3E+02 0.0029 26.6 18.5 105 104-212 13-117 (158)
260 TIGR00998 8a0101 efflux pump m 58.3 1.7E+02 0.0038 27.9 14.2 6 46-51 53-58 (334)
261 PF12777 MT: Microtubule-bindi 58.2 1.5E+02 0.0033 29.2 11.7 34 161-194 69-102 (344)
262 PF10805 DUF2730: Protein of u 58.1 1E+02 0.0022 25.2 9.0 23 194-216 64-86 (106)
263 PRK11519 tyrosine kinase; Prov 58.0 2.8E+02 0.0061 30.2 16.7 24 162-185 306-329 (719)
264 PF13094 CENP-Q: CENP-Q, a CEN 58.0 96 0.0021 26.9 9.2 52 163-214 23-74 (160)
265 PF02403 Seryl_tRNA_N: Seryl-t 57.7 99 0.0021 24.9 9.4 32 126-157 35-66 (108)
266 PF02183 HALZ: Homeobox associ 57.6 48 0.001 23.2 5.8 36 173-208 4-39 (45)
267 PF08172 CASP_C: CASP C termin 57.2 1.2E+02 0.0026 28.8 10.3 45 173-217 78-122 (248)
268 KOG4593 Mitotic checkpoint pro 56.9 3E+02 0.0065 30.1 22.1 44 71-114 354-399 (716)
269 KOG1029 Endocytic adaptor prot 56.8 3.2E+02 0.007 30.5 17.5 28 99-126 451-478 (1118)
270 PF14915 CCDC144C: CCDC144C pr 56.7 2E+02 0.0044 28.2 16.5 101 111-215 4-104 (305)
271 TIGR02449 conserved hypothetic 56.2 87 0.0019 23.8 8.6 48 177-224 3-50 (65)
272 PF05335 DUF745: Protein of un 56.2 1.6E+02 0.0035 26.8 18.1 42 174-215 116-157 (188)
273 KOG0995 Centromere-associated 56.2 2.8E+02 0.0061 29.6 22.0 71 92-163 249-322 (581)
274 PRK14475 F0F1 ATP synthase sub 55.6 1.4E+02 0.0031 26.1 14.4 53 99-151 33-86 (167)
275 COG1340 Uncharacterized archae 55.4 2.1E+02 0.0046 28.0 20.2 142 74-224 108-257 (294)
276 PF06476 DUF1090: Protein of u 55.4 1.2E+02 0.0027 25.3 9.8 52 158-211 61-112 (115)
277 KOG4403 Cell surface glycoprot 55.3 2E+02 0.0044 29.8 11.9 58 81-139 235-292 (575)
278 PF12761 End3: Actin cytoskele 55.1 1.7E+02 0.0038 26.9 12.2 24 101-124 98-121 (195)
279 PF05010 TACC: Transforming ac 55.0 1.8E+02 0.0039 27.0 20.4 52 169-220 64-115 (207)
280 COG2882 FliJ Flagellar biosynt 55.0 1.5E+02 0.0032 26.1 19.2 98 112-215 15-112 (148)
281 PF10146 zf-C4H2: Zinc finger- 54.9 1.9E+02 0.0041 27.2 16.0 40 173-212 38-77 (230)
282 COG1730 GIM5 Predicted prefold 54.8 88 0.0019 27.4 8.3 51 170-220 90-140 (145)
283 KOG3091 Nuclear pore complex, 54.8 2.2E+02 0.0048 29.9 12.3 52 166-217 340-391 (508)
284 COG4477 EzrA Negative regulato 54.5 2.9E+02 0.0064 29.3 18.2 57 100-158 249-305 (570)
285 KOG1853 LIS1-interacting prote 54.1 2.1E+02 0.0046 27.6 18.8 46 99-147 20-65 (333)
286 PF07794 DUF1633: Protein of u 53.9 2.9E+02 0.0063 29.2 12.9 59 101-163 599-657 (790)
287 PF05667 DUF812: Protein of un 53.8 3.1E+02 0.0068 29.4 19.5 48 101-148 330-377 (594)
288 PRK01156 chromosome segregatio 53.8 3.5E+02 0.0076 30.0 20.4 40 172-211 686-725 (895)
289 KOG2751 Beclin-like protein [S 53.5 2.7E+02 0.0059 28.7 13.1 66 154-219 202-270 (447)
290 PF09325 Vps5: Vps5 C terminal 53.1 1.8E+02 0.0038 26.3 20.0 68 76-147 2-72 (236)
291 PRK03947 prefoldin subunit alp 53.1 1.4E+02 0.003 25.2 12.0 43 173-215 5-47 (140)
292 KOG4196 bZIP transcription fac 52.9 75 0.0016 27.4 7.3 33 191-223 84-116 (135)
293 PF12325 TMF_TATA_bd: TATA ele 52.9 1.4E+02 0.0031 25.2 15.7 44 107-150 17-60 (120)
294 cd07655 F-BAR_PACSIN The F-BAR 52.8 2.1E+02 0.0044 27.0 18.3 17 76-92 59-75 (258)
295 PRK13729 conjugal transfer pil 52.7 71 0.0015 33.3 8.5 44 172-215 81-124 (475)
296 PF15397 DUF4618: Domain of un 52.2 2.2E+02 0.0048 27.3 15.6 51 78-128 60-110 (258)
297 PF09755 DUF2046: Uncharacteri 52.1 2.5E+02 0.0053 27.7 17.6 134 70-216 11-163 (310)
298 cd07666 BAR_SNX7 The Bin/Amphi 52.0 2.2E+02 0.0047 27.1 21.8 71 77-147 30-102 (243)
299 PLN02939 transferase, transfer 52.0 3.7E+02 0.008 30.7 14.4 77 101-186 266-343 (977)
300 TIGR01144 ATP_synt_b ATP synth 52.0 1.5E+02 0.0032 25.1 14.3 10 112-121 32-41 (147)
301 PRK13428 F0F1 ATP synthase sub 51.9 2.9E+02 0.0062 28.4 14.3 10 280-289 292-301 (445)
302 TIGR03752 conj_TIGR03752 integ 51.9 2E+02 0.0044 29.9 11.6 48 102-149 62-109 (472)
303 PF04728 LPP: Lipoprotein leuc 51.5 97 0.0021 22.9 7.7 12 217-228 37-48 (56)
304 PRK09841 cryptic autophosphory 51.5 3.6E+02 0.0077 29.4 15.1 23 126-148 273-295 (726)
305 PF05659 RPW8: Arabidopsis bro 51.4 1.7E+02 0.0036 25.6 11.8 47 168-214 95-143 (147)
306 PLN02769 Probable galacturonos 51.4 1.1E+02 0.0023 33.1 9.7 112 98-212 173-284 (629)
307 PF04849 HAP1_N: HAP1 N-termin 51.2 2.5E+02 0.0055 27.6 17.3 105 102-221 163-267 (306)
308 PF07743 HSCB_C: HSCB C-termin 51.0 1.1E+02 0.0023 23.2 9.1 75 98-179 2-76 (78)
309 PF07889 DUF1664: Protein of u 50.8 1.6E+02 0.0035 25.2 12.5 94 79-201 30-123 (126)
310 cd07665 BAR_SNX1 The Bin/Amphi 50.8 2.2E+02 0.0048 26.8 23.7 64 78-145 2-68 (234)
311 KOG1003 Actin filament-coating 50.7 2.1E+02 0.0045 26.5 19.3 22 101-122 27-48 (205)
312 COG1566 EmrA Multidrug resista 50.7 2.7E+02 0.0059 27.9 13.3 15 139-153 129-143 (352)
313 PRK14127 cell division protein 50.6 38 0.00082 28.3 5.1 33 180-212 36-68 (109)
314 PF03962 Mnd1: Mnd1 family; I 50.6 1.9E+02 0.0042 26.1 13.3 11 82-92 32-42 (188)
315 PRK11578 macrolide transporter 50.6 2.5E+02 0.0055 27.5 12.0 13 108-120 101-113 (370)
316 PF07106 TBPIP: Tat binding pr 50.4 1.1E+02 0.0023 26.9 8.4 24 238-261 113-136 (169)
317 TIGR02302 aProt_lowcomp conser 50.4 4.1E+02 0.009 29.9 22.1 37 143-179 570-606 (851)
318 TIGR02894 DNA_bind_RsfA transc 50.1 1.9E+02 0.0041 25.9 10.9 44 178-221 108-151 (161)
319 KOG0979 Structural maintenance 49.7 4.5E+02 0.0098 30.1 17.5 135 99-235 159-300 (1072)
320 CHL00118 atpG ATP synthase CF0 49.6 1.7E+02 0.0038 25.3 16.1 12 78-89 43-54 (156)
321 PF13851 GAS: Growth-arrest sp 49.5 2.1E+02 0.0045 26.2 17.9 25 193-217 91-115 (201)
322 TIGR00255 conserved hypothetic 49.5 2.6E+02 0.0056 27.2 13.8 136 102-253 131-290 (291)
323 PF10211 Ax_dynein_light: Axon 49.4 2E+02 0.0044 26.0 14.9 10 17-26 23-32 (189)
324 PF10212 TTKRSYEDQ: Predicted 49.1 3.5E+02 0.0075 28.6 15.5 89 108-208 422-514 (518)
325 PF01920 Prefoldin_2: Prefoldi 48.9 76 0.0016 25.0 6.6 39 174-212 62-100 (106)
326 TIGR03185 DNA_S_dndD DNA sulfu 48.8 3.7E+02 0.008 28.8 26.5 29 165-193 260-288 (650)
327 PF14282 FlxA: FlxA-like prote 48.6 1.5E+02 0.0032 24.3 8.5 18 170-187 22-39 (106)
328 PRK13428 F0F1 ATP synthase sub 48.4 3.2E+02 0.007 28.0 15.2 17 104-120 30-46 (445)
329 KOG0980 Actin-binding protein 48.1 4.5E+02 0.0098 29.7 23.6 10 102-111 333-342 (980)
330 PF00769 ERM: Ezrin/radixin/mo 48.1 2.4E+02 0.0053 26.5 16.5 24 270-293 176-200 (246)
331 PF00015 MCPsignal: Methyl-acc 47.7 1.9E+02 0.0042 25.2 12.8 12 103-114 79-90 (213)
332 TIGR02894 DNA_bind_RsfA transc 47.6 1.6E+02 0.0034 26.4 8.8 56 163-218 86-141 (161)
333 PRK14473 F0F1 ATP synthase sub 46.8 1.9E+02 0.0042 25.0 14.4 56 99-154 31-87 (164)
334 PRK11020 hypothetical protein; 46.7 1.8E+02 0.0039 24.6 9.7 51 132-182 3-53 (118)
335 PRK05035 electron transport co 46.5 1.1E+02 0.0023 33.6 9.1 48 102-149 425-472 (695)
336 PF12777 MT: Microtubule-bindi 46.5 2E+02 0.0044 28.3 10.5 25 125-149 198-222 (344)
337 PF05055 DUF677: Protein of un 46.4 3.1E+02 0.0067 27.3 13.8 52 109-160 239-290 (336)
338 PRK00888 ftsB cell division pr 46.1 87 0.0019 25.7 6.6 32 178-209 31-62 (105)
339 PRK00888 ftsB cell division pr 46.0 93 0.002 25.5 6.8 46 107-152 28-73 (105)
340 PRK13461 F0F1 ATP synthase sub 45.9 2E+02 0.0043 24.8 14.3 51 102-152 32-82 (159)
341 PF05701 WEMBL: Weak chloropla 45.8 3.8E+02 0.0082 28.1 21.2 10 280-289 430-439 (522)
342 PF02050 FliJ: Flagellar FliJ 45.7 1.4E+02 0.0031 23.2 17.5 90 117-213 2-91 (123)
343 PRK06231 F0F1 ATP synthase sub 45.3 2.4E+02 0.0053 25.7 14.4 54 99-152 71-125 (205)
344 cd07673 F-BAR_FCHO2 The F-BAR 45.2 2.8E+02 0.0061 26.4 22.9 42 74-119 60-101 (269)
345 KOG4438 Centromere-associated 45.0 3.7E+02 0.008 27.8 16.1 58 102-159 148-205 (446)
346 PF02183 HALZ: Homeobox associ 44.9 1.1E+02 0.0023 21.5 6.0 38 179-216 3-40 (45)
347 PRK14472 F0F1 ATP synthase sub 44.9 2.2E+02 0.0047 25.1 14.5 115 78-192 39-172 (175)
348 PRK06569 F0F1 ATP synthase sub 44.4 2.3E+02 0.0049 25.1 14.1 77 110-193 45-122 (155)
349 PF05008 V-SNARE: Vesicle tran 44.4 1.4E+02 0.0029 22.5 9.1 71 79-149 1-76 (79)
350 KOG0933 Structural maintenance 44.3 5.5E+02 0.012 29.6 22.9 69 99-167 244-312 (1174)
351 PRK11519 tyrosine kinase; Prov 44.2 4.6E+02 0.0099 28.6 20.0 19 99-117 238-259 (719)
352 KOG0018 Structural maintenance 44.1 5.6E+02 0.012 29.6 17.5 125 110-234 321-474 (1141)
353 PF14942 Muted: Organelle biog 43.7 2.2E+02 0.0048 24.8 16.6 76 77-155 7-94 (145)
354 PRK14471 F0F1 ATP synthase sub 43.7 2.2E+02 0.0047 24.7 14.3 50 102-151 35-84 (164)
355 cd07643 I-BAR_IMD_MIM Inverse 43.5 2.9E+02 0.0063 26.1 11.7 51 102-152 93-147 (231)
356 COG2900 SlyX Uncharacterized p 43.3 1.2E+02 0.0025 23.6 6.3 45 172-216 6-50 (72)
357 TIGR00414 serS seryl-tRNA synt 43.0 3.8E+02 0.0082 27.3 12.1 13 135-147 45-57 (418)
358 PRK10929 putative mechanosensi 42.9 6E+02 0.013 29.5 19.4 59 86-149 28-87 (1109)
359 PF15112 DUF4559: Domain of un 42.8 3.4E+02 0.0074 26.7 13.0 129 78-211 164-304 (307)
360 TIGR03825 FliH_bacil flagellar 42.8 2.9E+02 0.0063 25.9 21.6 52 109-160 40-92 (255)
361 COG3096 MukB Uncharacterized p 42.1 5.5E+02 0.012 28.9 22.7 182 101-293 495-683 (1480)
362 COG2900 SlyX Uncharacterized p 42.1 1.6E+02 0.0035 22.8 8.1 36 172-207 20-55 (72)
363 PRK15136 multidrug efflux syst 41.9 3.7E+02 0.008 26.8 13.9 14 107-120 100-113 (390)
364 PF00170 bZIP_1: bZIP transcri 41.9 1.4E+02 0.003 21.9 6.6 32 177-208 29-60 (64)
365 PF04156 IncA: IncA protein; 41.9 2.4E+02 0.0053 24.8 16.6 14 110-123 92-105 (191)
366 PF10234 Cluap1: Clusterin-ass 41.8 3.3E+02 0.0072 26.3 12.8 72 172-254 167-238 (267)
367 PF10498 IFT57: Intra-flagella 41.5 3.8E+02 0.0082 26.9 18.4 51 171-221 242-292 (359)
368 PF13763 DUF4167: Domain of un 41.5 1.5E+02 0.0032 23.5 6.9 43 139-181 35-77 (80)
369 PF08172 CASP_C: CASP C termin 41.4 90 0.002 29.6 6.8 106 110-215 3-134 (248)
370 PRK11578 macrolide transporter 41.2 2.9E+02 0.0064 27.0 10.8 18 110-127 96-113 (370)
371 TIGR01010 BexC_CtrB_KpsE polys 41.2 3.5E+02 0.0077 26.4 18.9 23 102-124 173-195 (362)
372 PRK10920 putative uroporphyrin 41.2 4E+02 0.0087 27.1 13.9 82 170-254 88-173 (390)
373 KOG4196 bZIP transcription fac 41.0 1.3E+02 0.0029 25.9 7.0 42 166-207 73-114 (135)
374 PF04380 BMFP: Membrane fusoge 41.0 1.7E+02 0.0037 22.7 9.1 29 181-209 50-78 (79)
375 PRK07737 fliD flagellar cappin 41.0 2.1E+02 0.0047 29.8 10.1 24 172-195 471-494 (501)
376 PF14662 CCDC155: Coiled-coil 40.6 3E+02 0.0064 25.4 17.9 115 88-211 25-139 (193)
377 PF14193 DUF4315: Domain of un 40.4 1.9E+02 0.004 23.0 7.8 39 190-228 3-41 (83)
378 PF14282 FlxA: FlxA-like prote 40.4 2E+02 0.0044 23.5 8.1 17 177-193 22-38 (106)
379 PRK15396 murein lipoprotein; P 40.1 1.8E+02 0.0039 22.8 7.5 51 182-234 26-76 (78)
380 PRK15030 multidrug efflux syst 40.1 1.9E+02 0.0042 28.8 9.4 14 112-125 102-115 (397)
381 cd07595 BAR_RhoGAP_Rich-like T 40.1 3.3E+02 0.0071 25.7 15.1 32 79-110 90-122 (244)
382 PF02994 Transposase_22: L1 tr 40.0 1.2E+02 0.0026 30.4 7.8 43 167-209 144-186 (370)
383 PF04849 HAP1_N: HAP1 N-termin 40.0 3.8E+02 0.0082 26.4 16.9 115 85-221 178-295 (306)
384 KOG1916 Nuclear protein, conta 39.9 2.8E+02 0.006 31.6 10.8 82 102-183 872-955 (1283)
385 COG4026 Uncharacterized protei 39.9 3.4E+02 0.0073 25.8 14.2 121 78-215 74-204 (290)
386 PRK10807 paraquat-inducible pr 39.6 3.5E+02 0.0075 28.7 11.5 46 71-123 407-453 (547)
387 PF12329 TMF_DNA_bd: TATA elem 39.6 1.7E+02 0.0038 22.4 9.3 43 173-215 11-53 (74)
388 PF06810 Phage_GP20: Phage min 39.5 2.6E+02 0.0057 24.5 10.8 13 279-291 120-132 (155)
389 KOG2264 Exostosin EXT1L [Signa 39.4 1.1E+02 0.0025 32.7 7.5 18 25-42 13-32 (907)
390 PF09738 DUF2051: Double stran 39.3 3.8E+02 0.0083 26.3 15.8 28 265-292 214-243 (302)
391 PF04108 APG17: Autophagy prot 39.2 4.3E+02 0.0092 26.8 19.9 34 122-155 194-227 (412)
392 PF06785 UPF0242: Uncharacteri 39.1 4.2E+02 0.009 26.7 17.3 35 159-193 133-167 (401)
393 PRK06569 F0F1 ATP synthase sub 39.0 2.8E+02 0.006 24.6 13.3 85 78-165 31-119 (155)
394 KOG1937 Uncharacterized conser 38.9 4.8E+02 0.01 27.3 16.2 66 128-195 263-328 (521)
395 PF07445 priB_priC: Primosomal 38.9 2.8E+02 0.0062 24.7 12.3 46 102-147 40-90 (173)
396 COG1345 FliD Flagellar capping 38.7 1.9E+02 0.0041 30.2 9.2 77 72-151 395-471 (483)
397 PF07851 TMPIT: TMPIT-like pro 38.6 4E+02 0.0087 26.5 11.0 48 168-215 5-52 (330)
398 PF13863 DUF4200: Domain of un 38.5 2.2E+02 0.0048 23.3 17.3 103 109-212 10-112 (126)
399 PRK12472 hypothetical protein; 38.3 5E+02 0.011 27.3 15.6 96 116-215 214-310 (508)
400 PF09849 DUF2076: Uncharacteri 38.3 85 0.0018 29.9 6.1 59 77-143 11-71 (247)
401 PF15456 Uds1: Up-regulated Du 38.2 2.5E+02 0.0054 23.8 9.8 93 161-256 5-110 (124)
402 PF13949 ALIX_LYPXL_bnd: ALIX 38.0 3.5E+02 0.0075 25.4 10.5 25 130-154 147-171 (296)
403 PRK05431 seryl-tRNA synthetase 37.5 3.6E+02 0.0079 27.5 10.9 32 125-156 33-64 (425)
404 PRK07352 F0F1 ATP synthase sub 37.1 2.9E+02 0.0063 24.2 13.0 18 104-121 55-72 (174)
405 PF04201 TPD52: Tumour protein 37.1 3.1E+02 0.0067 24.6 10.7 40 173-212 28-67 (162)
406 PRK01773 hscB co-chaperone Hsc 36.6 3.1E+02 0.0068 24.5 11.1 46 134-179 118-163 (173)
407 COG0419 SbcC ATPase involved i 36.6 6.5E+02 0.014 28.2 19.5 10 242-251 482-491 (908)
408 PF05615 THOC7: Tho complex su 36.6 2.6E+02 0.0057 23.6 12.6 63 160-222 46-108 (139)
409 PF07195 FliD_C: Flagellar hoo 36.4 2.2E+02 0.0049 26.3 8.6 67 77-146 171-237 (239)
410 PF06632 XRCC4: DNA double-str 36.0 4.5E+02 0.0099 26.2 14.3 49 94-142 118-166 (342)
411 COG4026 Uncharacterized protei 35.8 3.9E+02 0.0085 25.4 10.7 78 110-206 132-209 (290)
412 KOG0612 Rho-associated, coiled 35.7 7.9E+02 0.017 28.9 24.2 9 12-20 353-361 (1317)
413 COG0172 SerS Seryl-tRNA synthe 35.7 3.4E+02 0.0074 28.0 10.3 52 128-180 37-88 (429)
414 PF05557 MAD: Mitotic checkpoi 35.7 12 0.00027 40.5 0.0 10 32-41 26-35 (722)
415 cd07674 F-BAR_FCHO1 The F-BAR 35.6 3.8E+02 0.0083 25.2 16.9 42 73-118 52-93 (261)
416 PF15035 Rootletin: Ciliary ro 35.6 3.4E+02 0.0073 24.5 13.1 94 115-212 7-119 (182)
417 PF13874 Nup54: Nucleoporin co 35.6 2.8E+02 0.0061 23.7 9.4 58 167-224 37-94 (141)
418 PRK08032 fliD flagellar cappin 35.5 4.9E+02 0.011 26.8 11.6 48 168-215 407-458 (462)
419 PRK08032 fliD flagellar cappin 35.5 2.2E+02 0.0048 29.3 9.1 54 128-196 407-460 (462)
420 TIGR03321 alt_F1F0_F0_B altern 35.4 3.7E+02 0.0081 25.0 19.9 21 313-333 226-246 (246)
421 PF06818 Fez1: Fez1; InterPro 35.4 3.7E+02 0.0079 24.9 16.3 95 101-214 12-106 (202)
422 PRK08453 fliD flagellar cappin 35.1 2.1E+02 0.0045 31.2 9.1 70 77-149 599-668 (673)
423 PRK13454 F0F1 ATP synthase sub 35.0 3.3E+02 0.0071 24.3 17.7 41 116-156 65-105 (181)
424 PF05278 PEARLI-4: Arabidopsis 34.7 4.3E+02 0.0094 25.6 13.0 91 84-193 169-261 (269)
425 KOG1962 B-cell receptor-associ 34.4 3.9E+02 0.0085 25.0 12.7 6 11-16 19-24 (216)
426 KOG2629 Peroxisomal membrane a 34.3 4.6E+02 0.0099 25.7 10.9 53 76-134 98-150 (300)
427 KOG0288 WD40 repeat protein Ti 34.2 5.4E+02 0.012 26.6 16.8 22 106-127 13-34 (459)
428 PRK00286 xseA exodeoxyribonucl 34.0 5.1E+02 0.011 26.2 15.1 58 234-303 343-400 (438)
429 PF08946 Osmo_CC: Osmosensory 33.4 97 0.0021 21.9 4.1 32 179-217 10-41 (46)
430 KOG4673 Transcription factor T 33.4 7E+02 0.015 27.6 22.2 45 179-223 578-626 (961)
431 KOG2662 Magnesium transporters 33.0 5.6E+02 0.012 26.3 15.2 127 79-212 178-335 (414)
432 cd07651 F-BAR_PombeCdc15_like 32.9 3.9E+02 0.0085 24.5 17.9 138 111-249 58-204 (236)
433 PF15070 GOLGA2L5: Putative go 32.9 6.6E+02 0.014 27.1 19.0 84 133-217 121-217 (617)
434 TIGR03321 alt_F1F0_F0_B altern 32.8 4.1E+02 0.0089 24.7 13.5 13 279-291 233-245 (246)
435 PF08898 DUF1843: Domain of un 32.7 1.1E+02 0.0023 22.4 4.4 45 151-202 8-52 (53)
436 COG1730 GIM5 Predicted prefold 32.7 3.1E+02 0.0068 24.0 8.3 42 178-219 91-132 (145)
437 PF14346 DUF4398: Domain of un 32.7 2.5E+02 0.0055 22.3 11.0 29 141-169 43-71 (103)
438 PF05377 FlaC_arch: Flagella a 32.6 2E+02 0.0044 21.1 7.3 45 176-220 2-46 (55)
439 KOG0837 Transcriptional activa 32.6 3.6E+02 0.0079 26.1 9.2 42 165-206 225-266 (279)
440 PF04977 DivIC: Septum formati 32.4 1.8E+02 0.0039 21.5 6.1 45 175-219 18-62 (80)
441 PRK15362 pathogenicity island 32.2 2.2E+02 0.0047 29.5 8.1 82 77-158 61-151 (473)
442 PF10805 DUF2730: Protein of u 32.2 2.4E+02 0.0052 23.1 7.1 35 180-214 64-98 (106)
443 PF15466 DUF4635: Domain of un 32.2 81 0.0018 26.8 4.3 40 78-117 84-123 (135)
444 TIGR00293 prefoldin, archaeal 32.1 1.5E+02 0.0032 24.5 6.0 37 178-214 3-39 (126)
445 PF12761 End3: Actin cytoskele 32.1 4.1E+02 0.0089 24.5 10.2 25 129-153 98-122 (195)
446 PF08946 Osmo_CC: Osmosensory 32.0 1.1E+02 0.0023 21.8 4.1 12 173-184 18-29 (46)
447 PF12958 DUF3847: Protein of u 32.0 2.7E+02 0.0058 22.3 7.1 33 184-216 4-36 (86)
448 PRK13453 F0F1 ATP synthase sub 31.9 3.6E+02 0.0077 23.7 14.4 106 78-185 39-147 (173)
449 KOG1656 Protein involved in gl 31.9 4.3E+02 0.0093 24.7 10.4 16 316-331 157-172 (221)
450 PF13815 Dzip-like_N: Iguana/D 31.8 2.6E+02 0.0057 23.1 7.5 38 172-209 78-115 (118)
451 PRK14127 cell division protein 31.6 1.7E+02 0.0037 24.4 6.2 40 182-221 31-70 (109)
452 PF06216 RTBV_P46: Rice tungro 31.6 1.7E+02 0.0036 28.3 6.8 19 78-96 30-48 (389)
453 PF05266 DUF724: Protein of un 31.5 4E+02 0.0087 24.2 18.0 14 96-109 63-76 (190)
454 PF09325 Vps5: Vps5 C terminal 31.5 3.9E+02 0.0084 24.0 16.8 65 122-186 123-189 (236)
455 PRK12704 phosphodiesterase; Pr 31.4 6.4E+02 0.014 26.5 19.6 8 315-322 281-288 (520)
456 cd07598 BAR_FAM92 The Bin/Amph 31.4 4.2E+02 0.0091 24.4 20.0 65 98-162 3-67 (211)
457 PF12240 Angiomotin_C: Angiomo 30.9 4.4E+02 0.0095 24.5 18.7 117 174-305 57-183 (205)
458 PF07851 TMPIT: TMPIT-like pro 30.8 5.5E+02 0.012 25.6 11.2 18 131-148 8-25 (330)
459 PF10779 XhlA: Haemolysin XhlA 30.5 2.4E+02 0.0051 21.2 7.8 42 174-215 6-47 (71)
460 COG1340 Uncharacterized archae 30.4 5.3E+02 0.012 25.3 19.4 42 163-204 175-216 (294)
461 KOG0288 WD40 repeat protein Ti 30.4 6.3E+02 0.014 26.1 16.2 27 237-263 110-136 (459)
462 KOG1937 Uncharacterized conser 30.2 6.6E+02 0.014 26.3 13.5 33 91-123 282-324 (521)
463 PRK09973 putative outer membra 30.1 2.4E+02 0.0052 22.6 6.4 24 192-215 28-51 (85)
464 CHL00019 atpF ATP synthase CF0 30.0 3.9E+02 0.0085 23.7 14.3 106 78-185 45-153 (184)
465 KOG4643 Uncharacterized coiled 29.9 9.2E+02 0.02 27.9 17.8 48 101-148 410-457 (1195)
466 PRK07353 F0F1 ATP synthase sub 29.9 3.3E+02 0.0071 22.7 14.4 50 102-151 32-81 (140)
467 PRK15178 Vi polysaccharide exp 29.8 6.4E+02 0.014 26.0 13.2 106 96-214 273-388 (434)
468 cd07623 BAR_SNX1_2 The Bin/Amp 29.8 4.4E+02 0.0096 24.2 18.4 123 78-214 78-201 (224)
469 PF15294 Leu_zip: Leucine zipp 29.7 5.3E+02 0.012 25.1 13.7 97 101-210 127-230 (278)
470 PRK15422 septal ring assembly 29.6 2.8E+02 0.0062 21.9 9.8 43 175-217 26-68 (79)
471 PF00170 bZIP_1: bZIP transcri 29.3 2.3E+02 0.0049 20.6 8.1 34 181-214 26-59 (64)
472 cd00890 Prefoldin Prefoldin is 29.2 2.5E+02 0.0053 22.8 6.9 44 171-214 84-127 (129)
473 PF12709 Kinetocho_Slk19: Cent 29.1 3.1E+02 0.0066 22.1 11.5 33 182-214 50-82 (87)
474 cd07620 BAR_SH3BP1 The Bin/Amp 29.0 5.3E+02 0.011 24.8 13.3 87 62-151 63-149 (257)
475 PRK10246 exonuclease subunit S 29.0 9.2E+02 0.02 27.6 19.8 158 104-262 608-791 (1047)
476 PF12329 TMF_DNA_bd: TATA elem 28.5 2.7E+02 0.0059 21.3 9.6 43 172-214 17-59 (74)
477 PF10392 COG5: Golgi transport 28.3 3.6E+02 0.0078 22.7 13.8 74 134-215 33-106 (132)
478 PF04394 DUF536: Protein of un 28.1 2.2E+02 0.0047 20.0 6.4 36 172-207 8-43 (45)
479 PRK07353 F0F1 ATP synthase sub 28.0 3.6E+02 0.0077 22.5 14.8 46 120-165 43-88 (140)
480 KOG2072 Translation initiation 27.9 9.2E+02 0.02 27.3 15.7 44 99-142 536-583 (988)
481 PRK09973 putative outer membra 27.9 3.2E+02 0.0069 21.9 7.0 34 182-215 25-58 (85)
482 PRK06664 fliD flagellar hook-a 27.9 3.8E+02 0.0081 29.2 9.6 24 129-152 602-625 (661)
483 TIGR02338 gimC_beta prefoldin, 27.8 3.3E+02 0.0072 22.1 11.3 95 106-200 13-107 (110)
484 PHA01750 hypothetical protein 27.7 2.1E+02 0.0045 22.0 5.4 36 177-212 38-73 (75)
485 PRK13453 F0F1 ATP synthase sub 27.7 4.2E+02 0.0092 23.3 18.5 142 69-232 11-155 (173)
486 PF14992 TMCO5: TMCO5 family 27.7 5.8E+02 0.013 24.8 13.1 129 94-224 44-180 (280)
487 cd07619 BAR_Rich2 The Bin/Amph 27.5 5.5E+02 0.012 24.5 15.8 127 79-205 90-233 (248)
488 PF13942 Lipoprotein_20: YfhG 27.5 4E+02 0.0086 24.2 8.1 52 163-214 105-156 (179)
489 PF10079 DUF2317: Uncharacteri 27.5 5.8E+02 0.013 27.0 10.7 113 84-204 383-497 (542)
490 COG5185 HEC1 Protein involved 27.3 7.6E+02 0.017 26.1 13.1 110 101-212 297-406 (622)
491 KOG4182 Uncharacterized conser 27.2 7.8E+02 0.017 26.2 11.2 147 137-333 34-188 (828)
492 PF08702 Fib_alpha: Fibrinogen 27.1 4.2E+02 0.0091 23.0 15.7 104 103-209 26-132 (146)
493 PRK01203 prefoldin subunit alp 27.1 2.2E+02 0.0048 24.5 6.3 41 162-202 2-42 (130)
494 PF03962 Mnd1: Mnd1 family; I 26.9 4.7E+02 0.01 23.6 14.3 98 106-216 62-163 (188)
495 KOG4460 Nuclear pore complex, 26.9 8.3E+02 0.018 26.4 18.9 139 105-253 573-728 (741)
496 KOG4360 Uncharacterized coiled 26.9 7.9E+02 0.017 26.1 13.4 101 103-203 202-304 (596)
497 PF07200 Mod_r: Modifier of ru 26.9 3.9E+02 0.0085 22.6 9.8 69 164-232 38-106 (150)
498 PF10481 CENP-F_N: Cenp-F N-te 26.9 6.1E+02 0.013 24.8 15.7 106 106-222 18-129 (307)
499 cd00632 Prefoldin_beta Prefold 26.9 3.3E+02 0.0073 21.8 12.1 96 106-201 9-104 (105)
500 PF01763 Herpes_UL6: Herpesvir 26.8 6.3E+02 0.014 27.0 10.7 82 51-142 325-406 (557)
No 1
>PRK10698 phage shock protein PspA; Provisional
Probab=100.00 E-value=3.7e-47 Score=350.77 Aligned_cols=219 Identities=31% Similarity=0.498 Sum_probs=213.4
Q ss_pred CchHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019853 76 MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQ 155 (335)
Q Consensus 76 Msif~Rl~~lira~in~~ldk~EDPe~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~ 155 (335)
||||+||+++|+|++|+++|++|||++||+|+|++|++++.++++++|++++.++++++++.+++..+.+|+.+|..||.
T Consensus 1 M~if~Rl~~ii~a~in~~ldkaEDP~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~ 80 (222)
T PRK10698 1 MGIFSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALR 80 (222)
T ss_pred CCHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 019853 156 KGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVN 235 (335)
Q Consensus 156 ~G~EdLAreAL~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~~~AkAq~~v~~~~~~~~ 235 (335)
+|+|||||+||.+|..++.++..|+.+++.+...+++|+.++..|+.+|.+++.++++|++|+++|+++.++++.+++++
T Consensus 81 ~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~ 160 (222)
T PRK10698 81 KEKEDLARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGK 160 (222)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHhhcccCCChhHHHhhhccC-CHHHHHHHHHHHcCCC
Q 019853 236 TSSALSAFEKMEEKVLTMESQADSLNQLTTDDLEGKFALLETS-SVDDDLANLKKELSGS 294 (335)
Q Consensus 236 ~~~a~~~feRmEeki~~~EA~AeA~~eL~~~~Le~k~a~le~~-~vddeLa~LKa~l~~~ 294 (335)
+++++..|+|||+||+++|++++|+..+.+++|+.+|+.|+.+ .||++|++||++|+..
T Consensus 161 ~~~a~~~f~rmE~ki~~~Ea~aea~~~~~~~~l~~e~~~le~~~~ve~ELa~LK~~~~~~ 220 (222)
T PRK10698 161 LDEAMARFESFERRIDQMEAEAESHGFGKQKSLDQQFAELKADDEISEQLAALKAKMKQD 220 (222)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhHhhccCCCCHHHHHHHhhccchHHHHHHHHHHHhccc
Confidence 9999999999999999999999999776567899999999864 6999999999999654
No 2
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=100.00 E-value=1.9e-45 Score=338.73 Aligned_cols=218 Identities=35% Similarity=0.539 Sum_probs=212.4
Q ss_pred CchHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019853 76 MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQ 155 (335)
Q Consensus 76 Msif~Rl~~lira~in~~ldk~EDPe~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~ 155 (335)
||||+||+++|+|++|+++|++|||++||+|+||||+++|.++++++|++++.+++++++++++...+.+|+++|..||+
T Consensus 1 M~if~Rl~~iv~a~~n~~~dk~EDP~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~ 80 (219)
T TIGR02977 1 MGIFSRFADIVNSNLNALLDKAEDPEKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALS 80 (219)
T ss_pred CcHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 019853 156 KGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVN 235 (335)
Q Consensus 156 ~G~EdLAreAL~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~~~AkAq~~v~~~~~~~~ 235 (335)
+|+||||++||.++..++.++..|+.+++.+...+.+|+..+..|+.+|.+++.++.+|++|.+.|+++.+++..+++++
T Consensus 81 ~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~~~~~ 160 (219)
T TIGR02977 81 KGREDLARAALIEKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQLDSGR 160 (219)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHhhcccCCChhHHHhhhcc-CCHHHHHHHHHHHcCC
Q 019853 236 TSSALSAFEKMEEKVLTMESQADSLNQLTTDDLEGKFALLET-SSVDDDLANLKKELSG 293 (335)
Q Consensus 236 ~~~a~~~feRmEeki~~~EA~AeA~~eL~~~~Le~k~a~le~-~~vddeLa~LKa~l~~ 293 (335)
.+++...|+|||+||..+|+.++++...++++|+.+|+.++. ++||++|++||++|++
T Consensus 161 ~~~a~~~fer~e~ki~~~ea~aea~~~~~~~~l~~~l~~l~~~~~vd~eLa~LK~~~~~ 219 (219)
T TIGR02977 161 SDEAMARFEQYERRVDELEAQAESYDLGRKPSLEDEFAELEADDEIERELAALKAKMKK 219 (219)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHhcCCChHHHHHHHHHhhhCC
Confidence 999999999999999999999999976557889999999985 4799999999999864
No 3
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-42 Score=320.35 Aligned_cols=218 Identities=47% Similarity=0.637 Sum_probs=213.3
Q ss_pred CchHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019853 76 MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQ 155 (335)
Q Consensus 76 Msif~Rl~~lira~in~~ldk~EDPe~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~ 155 (335)
||||+||+++|++++|+++|++|||.+||+|+||||+.+|.++++.+|++++.+++++++|+++...+.+|+.+|+.||.
T Consensus 1 M~i~~r~~~~~~a~~~~~~dk~EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~ 80 (225)
T COG1842 1 MGIFSRLKDLVKANINELLDKAEDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQ 80 (225)
T ss_pred CchHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 019853 156 KGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVN 235 (335)
Q Consensus 156 ~G~EdLAreAL~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~~~AkAq~~v~~~~~~~~ 235 (335)
+|+|+||+++|.+++.|++.+..++.++.++...+.+|+.++..|+.||.+++.++..+++|..+++|+.+|++.+++++
T Consensus 81 ~g~E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~~~v~~~~~~~s 160 (225)
T COG1842 81 AGNEDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQEKVNRSLGGGS 160 (225)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHhhcc---cCCChhHHHhhhcc-CCHHHHHHHHHHHcCC
Q 019853 236 TSSALSAFEKMEEKVLTMESQADSLNQL---TTDDLEGKFALLET-SSVDDDLANLKKELSG 293 (335)
Q Consensus 236 ~~~a~~~feRmEeki~~~EA~AeA~~eL---~~~~Le~k~a~le~-~~vddeLa~LKa~l~~ 293 (335)
++++...|+||++||+.+|++++++.+| .+++++.+|+.++. ..|+++|++||+++..
T Consensus 161 ~~sa~~~fer~e~kiee~ea~a~~~~el~~~~~~dl~~e~a~~~~~~~v~~~La~lka~~~~ 222 (225)
T COG1842 161 SSSAMAAFERMEEKIEEREARAEAAAELAEGSGDDLDKEFAQAGAQSAVDSRLAALKARMKG 222 (225)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHhHHhhccCcccHHHHHHHhcccccHHHHHHHHHHhhcc
Confidence 9999999999999999999999999975 46899999999984 6899999999999876
No 4
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=100.00 E-value=2e-42 Score=317.93 Aligned_cols=216 Identities=46% Similarity=0.670 Sum_probs=210.6
Q ss_pred chHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019853 77 NLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQK 156 (335)
Q Consensus 77 sif~Rl~~lira~in~~ldk~EDPe~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~ 156 (335)
|||+||+++|+|++|+++|++|||++||+|+||||++.|.+++++++.+++.+++++++++++...+.+|+.+|..||.+
T Consensus 1 ~lf~Rl~~~~~a~~~~~ld~~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~ 80 (221)
T PF04012_consen 1 GLFKRLKTLVKANINELLDKAEDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAA 80 (221)
T ss_pred CHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 019853 157 GEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNT 236 (335)
Q Consensus 157 G~EdLAreAL~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~~~AkAq~~v~~~~~~~~~ 236 (335)
|+||||+.||.++..++.++..|+.+++.+...+.+|+.++..++.+|.++++++.+|++|.++|+++.+++..+++++.
T Consensus 81 g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~~~~~~~~~ 160 (221)
T PF04012_consen 81 GREDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKKVNEALASFSV 160 (221)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHhHHHHHHHhhccc--CCChhHHHhhhcc-CCH-HHHHHHHHHHcC
Q 019853 237 SSALSAFEKMEEKVLTMESQADSLNQLT--TDDLEGKFALLET-SSV-DDDLANLKKELS 292 (335)
Q Consensus 237 ~~a~~~feRmEeki~~~EA~AeA~~eL~--~~~Le~k~a~le~-~~v-ddeLa~LKa~l~ 292 (335)
+++...|+||++||..++++++|+.++. ..+++.+|+.++. ..+ +++|++||++.+
T Consensus 161 ~~a~~~~er~e~ki~~~ea~a~a~~el~~~~~~~e~~l~~~~~~~~~~~~~La~LK~~~~ 220 (221)
T PF04012_consen 161 SSAMDSFERMEEKIEEMEARAEASAELADSDQDLEAELEELERDSSVSEDELAALKAKQG 220 (221)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHhcCCCcchHHHHHHHHhHcc
Confidence 9999999999999999999999999997 3579999999985 578 999999999875
No 5
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=98.67 E-value=4.4e-06 Score=75.89 Aligned_cols=146 Identities=18% Similarity=0.236 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 125 VLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKI 204 (335)
Q Consensus 125 v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki 204 (335)
+......|+++...++..+++....|+..+..|+-+-|..+|.+|+.|+.++..+..++..++..+..+
T Consensus 32 Lk~~~~~L~krq~~Le~kIe~e~~~Ak~~~~~~kk~~Al~~LkrKK~~E~ql~q~~~ql~nLEq~~~~i----------- 100 (191)
T PTZ00446 32 NREAIDALEKKQVQVEKKIKQLEIEAKQKVEQNQMSNAKILLKRKKLYEQEIENILNNRLTLEDNMINL----------- 100 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 333444556666667777777777888899999999999999999999999999999888777777655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhHHHHHHHhhcc-----cCCChhHHHhhhccCC
Q 019853 205 QEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMESQADSLNQL-----TTDDLEGKFALLETSS 279 (335)
Q Consensus 205 ~e~k~kr~~LkAr~~~AkAq~~v~~~~~~~~~~~a~~~feRmEeki~~~EA~AeA~~eL-----~~~~Le~k~a~le~~~ 279 (335)
+.++....++.+-...+++.++++. .++.+.....++.|++.++..+.-.++++.- +.++|+.+|..|+...
T Consensus 101 E~a~~~~ev~~aLk~g~~aLK~~~k---~~~idkVd~lmDei~E~~e~~~EIseaLs~~~~~~~DEdELe~ELe~Le~e~ 177 (191)
T PTZ00446 101 ENMHLHKIAVNALSYAANTHKKLNN---EINTQKVEKIIDTIQENKDIQEEINQALSFNLLNNVDDDEIDKELDLLKEQT 177 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHH
Confidence 6677788888888888888888876 5567788888899998888888777777642 2346777888777666
Q ss_pred HHHHH
Q 019853 280 VDDDL 284 (335)
Q Consensus 280 vddeL 284 (335)
++..|
T Consensus 178 l~~~l 182 (191)
T PTZ00446 178 MEEKL 182 (191)
T ss_pred HHHHH
Confidence 66655
No 6
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.36 E-value=0.00015 Score=66.03 Aligned_cols=113 Identities=20% Similarity=0.337 Sum_probs=86.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 019853 158 EEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTS 237 (335)
Q Consensus 158 ~EdLAreAL~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~~~AkAq~~v~~~~~~~~~~ 237 (335)
+--.|..||.||+.||.++..+...+...+.+...| +.+..--++|.+....|+|.+.++. +++.+
T Consensus 59 NKR~AlqaLkrKK~~E~qL~qidG~l~tie~Qr~al-----------EnA~~n~Evl~~m~~~A~AmK~~h~---~mDiD 124 (221)
T KOG1656|consen 59 NKRMALQALKRKKRYEKQLAQIDGTLSTIEFQREAL-----------ENANTNTEVLDAMGSAAKAMKAAHK---NMDID 124 (221)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-----------HcccccHHHHHHHHHHHHHHHHHHh---ccChh
Confidence 556899999999999999988888877766666555 4556666778888888888877776 66778
Q ss_pred cHHHHHHHHHHHHHhHHHHHHHhhcc-------cCCChhHHHhhhccCCHHHHH
Q 019853 238 SALSAFEKMEEKVLTMESQADSLNQL-------TTDDLEGKFALLETSSVDDDL 284 (335)
Q Consensus 238 ~a~~~feRmEeki~~~EA~AeA~~eL-------~~~~Le~k~a~le~~~vddeL 284 (335)
.....++.|.+.++-.+--.+|++-. +.|+|..+|.+|++...|.+|
T Consensus 125 kVdd~MdeI~eQqe~a~eIseAiS~Pvg~~a~~DEDEL~~ELdeLeqeeld~~l 178 (221)
T KOG1656|consen 125 KVDDLMDEIAEQQEVAEEISEAISAPVGFGADFDEDELMAELDELEQEELDKEL 178 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCccccccccCHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999888887653 235666777777655455444
No 7
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=98.20 E-value=7.2e-05 Score=65.35 Aligned_cols=156 Identities=22% Similarity=0.338 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 121 ATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLL 200 (335)
Q Consensus 121 ~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~L 200 (335)
++..+.....++++++..++..+.+...+|..+++.|+.+.|+..|.+++.++.++..+...+. ++..+
T Consensus 2 ai~~Lk~~~~~L~~~~~~le~~i~~~~~~~k~~~~~~~~~~A~~~lk~~k~~~k~~~~~~~~~~-----------~l~~~ 70 (171)
T PF03357_consen 2 AILKLKKTIRRLEKQIKRLEKKIKKLEKKAKKAIKKGNKERAKIYLKRKKRLEKQLEKLLNQLS-----------NLESV 70 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHH
Confidence 3455666788899999999999999999999999999999999999999999988777765544 44444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhHHHHHHHhhcccCCChhHHHhhhccCCH
Q 019853 201 ESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMESQADSLNQLTTDDLEGKFALLETSSV 280 (335)
Q Consensus 201 e~ki~e~k~kr~~LkAr~~~AkAq~~v~~~~~~~~~~~a~~~feRmEeki~~~EA~AeA~~eL~~~~Le~k~a~le~~~v 280 (335)
..+|+.+......+.+-..+..+-++++. .++.+.....++.|++.++.++.-.+++....... .......+
T Consensus 71 ~~~ie~a~~~~~v~~al~~~~~~Lk~~~~---~i~~~~v~~~~d~~~e~~e~~~ei~~~l~~~~~~~-----~~~dd~el 142 (171)
T PF03357_consen 71 LLQIETAQSNQQVVKALKQSSKALKKINK---QINLDKVEKLMDDFQEEMEDQDEISEALSDSMDQV-----DDVDDEEL 142 (171)
T ss_dssp HHHHHHHHHHHHHSSS----SHHHHHHHH---STTSCCHHHHHHHHHHHHHHHTS---------------------TTST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhhhhHHHHHHHHHHHHHHHHHHHHHHHccccCC-----CCCCHHHH
Confidence 55556777777777777777777766655 55667777888888888777665555444321100 11223468
Q ss_pred HHHHHHHHHHcCCCC
Q 019853 281 DDDLANLKKELSGSS 295 (335)
Q Consensus 281 ddeLa~LKa~l~~~~ 295 (335)
+++|..|-.+.....
T Consensus 143 e~eL~~l~~e~~~~~ 157 (171)
T PF03357_consen 143 EEELEQLEDEIEEEE 157 (171)
T ss_dssp TCHHHHHHHCCCTTS
T ss_pred HHHHHHHHHHHhhhh
Confidence 889999999887654
No 8
>PTZ00464 SNF-7-like protein; Provisional
Probab=98.19 E-value=0.00076 Score=62.36 Aligned_cols=114 Identities=14% Similarity=0.197 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Q 019853 159 EDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSS 238 (335)
Q Consensus 159 EdLAreAL~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~~~AkAq~~v~~~~~~~~~~~ 238 (335)
-.-|..+|.+|+.||.++..+..++..+.+.+. .|+.++....++.+-...+++-+.++.. ++.+.
T Consensus 60 K~~Al~~LK~KK~~E~ql~~l~~q~~nleq~~~-----------~ie~a~~~~~vv~amk~g~kaLK~~~k~---i~id~ 125 (211)
T PTZ00464 60 KQRAMQLLQQKRMYQNQQDMMMQQQFNMDQLQF-----------TTESVKDTKVQVDAMKQAAKTLKKQFKK---LNVDK 125 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCHHH
Confidence 457888999999999998888888765555544 4467777788888888888888888764 56677
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhhccc--CCChhHHHhhhccCCHHHHHHHHHHHcCC
Q 019853 239 ALSAFEKMEEKVLTMESQADSLNQLT--TDDLEGKFALLETSSVDDDLANLKKELSG 293 (335)
Q Consensus 239 a~~~feRmEeki~~~EA~AeA~~eL~--~~~Le~k~a~le~~~vddeLa~LKa~l~~ 293 (335)
....++.|++.++..+.-.++++.-. .+++|+ +++++||+.|-.++..
T Consensus 126 Vd~l~Dei~E~~e~~~EI~e~Ls~~~~~~~~~DE-------dELe~ELe~Le~e~~~ 175 (211)
T PTZ00464 126 VEDLQDELADLYEDTQEIQEIMGRAYDVPDDIDE-------DEMLGELDALDFDMEK 175 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCH-------HHHHHHHHHHHHHHhc
Confidence 78888888888888777777766421 122222 2577777777777643
No 9
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=0.00071 Score=67.80 Aligned_cols=191 Identities=18% Similarity=0.277 Sum_probs=135.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 115 LVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLV 194 (335)
Q Consensus 115 L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~le~qle~~~~~v~~Lk 194 (335)
+.+.-.+++.++-....+.++++.+++++++...+++.|++.|.-.+|..-|.+++.++..++..-..+.++
T Consensus 228 it~~D~~V~~L~~~~~~L~kqie~L~qeie~~~~~~r~~~k~g~K~iA~~ylr~rk~~eK~~er~~~~l~~l-------- 299 (439)
T KOG2911|consen 228 ITEIDGSVADLIQARAKLAKQIEFLEQEIEKSKEKLRQALKEGKKQIAITYLRARKLLEKDLERKVSSLNNL-------- 299 (439)
T ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhHHHHHHHHHHH--------
Confidence 455667788888888899999999999999999999999999999999999999999999888776665544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhHHHHHHHhhccc--CCChhHHH
Q 019853 195 SNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMESQADSLNQLT--TDDLEGKF 272 (335)
Q Consensus 195 ~~l~~Le~ki~e~k~kr~~LkAr~~~AkAq~~v~~~~~~~~~~~a~~~feRmEeki~~~EA~AeA~~eL~--~~~Le~k~ 272 (335)
..+-++|...++-+..+.|-.....|-+.+... +.+++.+.+.++.+++-+++.+---++++.-. ..+++++
T Consensus 300 ---~~vl~~Id~s~~nkvvl~AyksGs~alK~il~~--~~s~ekVed~Ldev~et~d~~~EV~~~la~~~~~~~d~~de- 373 (439)
T KOG2911|consen 300 ---ETVLSQIDNSQTNKVVLQAYKSGSEALKAILAQ--GGSTEKVEDVLDEVNETLDRQEEVEDALASYNVNNIDFEDE- 373 (439)
T ss_pred ---HHHHHHHHhhcccHHHHHHHHHhHHHHHHHHhc--cCChhhHHHHHHHHHHHHhhHHHHHHHHhcCCCCCCccchH-
Confidence 344456677778888888877777777777655 34456678888888888887776666665432 2344433
Q ss_pred hhhccCCHHHHHHHHHHHcCCCCCCCCCCCCCCcCCCCCCCCC--CChhhHHHHHHHHHHh
Q 019853 273 ALLETSSVDDDLANLKKELSGSSKKGELPPGRAAASSTNTAFP--FRDAEIEKELNELRQR 331 (335)
Q Consensus 273 a~le~~~vddeLa~LKa~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 331 (335)
+++.||..|-....+.. .-.+|.+ +.+-.++ |.|.++..+++.|...
T Consensus 374 ------~lEkEL~~L~~D~~k~e-~~~lp~~-----~~sr~~~~r~sd~el~~~~~~le~~ 422 (439)
T KOG2911|consen 374 ------DLEKELEDLEADEKKNE-DLVLPLN-----SVSRDFLKRLSDLELLTNEDSLEKT 422 (439)
T ss_pred ------HHHHHHHHHHhccccCC-ccCCCCC-----CchHHHhhhcchhhhccccchhhhh
Confidence 57788887766543321 1112222 1222233 7777777776666543
No 10
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=97.81 E-value=0.0073 Score=55.90 Aligned_cols=182 Identities=16% Similarity=0.173 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Q 019853 110 EMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRR-----KSYADNANALKAQLD 184 (335)
Q Consensus 110 eme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk-----~~~e~q~~~le~qle 184 (335)
-++.-+.+++..+..+...--........++.++......+.. .+.=|+.||..= ...-.....++.++.
T Consensus 28 ~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~-----~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~ 102 (219)
T TIGR02977 28 MIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVAD-----WQEKAELALSKGREDLARAALIEKQKAQELAE 102 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 3444455555566655555555555555555555555555443 234455555421 112235668889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CCCcHHHHHHHHHHHHHhHHHHHHHh
Q 019853 185 QQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNV----NTSSALSAFEKMEEKVLTMESQADSL 260 (335)
Q Consensus 185 ~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~~~AkAq~~v~~~~~~~----~~~~a~~~feRmEeki~~~EA~AeA~ 260 (335)
.+..+++.++..+.+|+.+|.+++.++..++++...-.++.+.......+ +..+...+++.++. ++....+.+|.
T Consensus 103 ~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~~~~~~~~a~~~fer-~e~ki~~~ea~ 181 (219)
T TIGR02977 103 ALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQLDSGRSDEAMARFEQ-YERRVDELEAQ 181 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHH-HHHHHHHHHHH
Confidence 99999999999999999999999999999999999887777655544333 33455566665543 33334444444
Q ss_pred hcccCCChhHHHhhhccCCHHHHHHHHHHHcCCCCCCCCCCCCCCcCCCCCCCCCCChhhHHHHHHHHHHhhh
Q 019853 261 NQLTTDDLEGKFALLETSSVDDDLANLKKELSGSSKKGELPPGRAAASSTNTAFPFRDAEIEKELNELRQRAK 333 (335)
Q Consensus 261 ~eL~~~~Le~k~a~le~~~vddeLa~LKa~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (335)
.++.. ...+++++++|+.|-. +++|+.||..|+.+++
T Consensus 182 aea~~--------~~~~~~l~~~l~~l~~----------------------------~~~vd~eLa~LK~~~~ 218 (219)
T TIGR02977 182 AESYD--------LGRKPSLEDEFAELEA----------------------------DDEIERELAALKAKMK 218 (219)
T ss_pred HHHhh--------ccCCCCHHHHHHHhcC----------------------------CChHHHHHHHHHhhhC
Confidence 43321 1124568888887731 1359999999998864
No 11
>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.57 E-value=0.038 Score=50.32 Aligned_cols=200 Identities=16% Similarity=0.262 Sum_probs=103.8
Q ss_pred hccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Q 019853 95 SSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYAD 174 (335)
Q Consensus 95 dk~EDPe~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~ 174 (335)
-+.-.|..+|.+.-|.|......+.+....+-.++|.+-..+ +.--+.|+++.++--+.......+
T Consensus 5 gk~~tp~e~Lr~nqRal~~a~ReleRer~~le~qeKklvaeI--------------Kk~AK~gq~~A~KimAkdLvRtR~ 70 (224)
T KOG3230|consen 5 GKKKTPAELLRENQRALNKATRELERERQKLELQEKKLVAEI--------------KKTAKQGQMDAVKIMAKDLVRTRR 70 (224)
T ss_pred cCCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHcccHHHHHHHHHHHHHHHH
Confidence 345579988888888888777776665554444443332222 233456887766554332222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHH----HHHHH
Q 019853 175 NANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEK----MEEKV 250 (335)
Q Consensus 175 q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~~~AkAq~~v~~~~~~~~~~~a~~~feR----mEeki 250 (335)
++ .++..++++|+-.-.+..+|++....+++.+-+...++++|-.-....+.+ +|..-
T Consensus 71 ~i------------------~kf~~~kaqiqaVSl~iQtlkss~sma~aMkGaTkam~~MNrqmnlpq~qkIm~eFekQs 132 (224)
T KOG3230|consen 71 YI------------------KKFQNMKAQIQAVSLRIQTLKSSTSMAQAMKGATKAMAGMNRQMNLPQIQKIMQEFEKQS 132 (224)
T ss_pred HH------------------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHH
Confidence 21 223344555556666666777777777777777777766653322333333 33333
Q ss_pred HhHHHHHHHhhcccCCChhHHHhhhcc----C-CHHHHHHHHHHHcC----CCCC-CCCCCCCCC--cCCCCCCCC---C
Q 019853 251 LTMESQADSLNQLTTDDLEGKFALLET----S-SVDDDLANLKKELS----GSSK-KGELPPGRA--AASSTNTAF---P 315 (335)
Q Consensus 251 ~~~EA~AeA~~eL~~~~Le~k~a~le~----~-~vddeLa~LKa~l~----~~~~-~~~~~~~~~--~~~~~~~~~---~ 315 (335)
+.|+-+.+-++ +.+|+-+..-+. + =|+.+|..|=-.++ .-++ .|.+|-|.. ......++. -
T Consensus 133 e~Mdm~~Emm~----daIDdal~~~edEEEtd~lvnqVLDEiGvdl~~qL~~~P~~~~~~~~a~~ig~~~a~~~gs~~~~ 208 (224)
T KOG3230|consen 133 EIMDMKEEMMD----DAIDDALGDDEDEEETDDLVNQVLDEIGVDLASQLSSLPSAAGSLPIAKTIGGKKAEAAGSEFHS 208 (224)
T ss_pred HHHHHHHHHHH----HHHHHhhcccchhHHHHHHHHHHHHHHcccHHHHhccCcccccccchhhccCCccccccccccCC
Confidence 44444444433 334444432221 1 25666666544443 2222 355544431 011122222 2
Q ss_pred CChhhHHHHHHHHHH
Q 019853 316 FRDAEIEKELNELRQ 330 (335)
Q Consensus 316 ~~~~~~~~~~~~~~~ 330 (335)
=-|++|++-|+.||+
T Consensus 209 ~~dddLqaRL~~Lrk 223 (224)
T KOG3230|consen 209 DADDDLQARLDNLRK 223 (224)
T ss_pred CchhHHHHHHHHHhc
Confidence 237899999999986
No 12
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=97.39 E-value=0.12 Score=48.36 Aligned_cols=170 Identities=15% Similarity=0.162 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH-----HHHHHHHHHHHHHH
Q 019853 109 LEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRR-----KSYADNANALKAQL 183 (335)
Q Consensus 109 reme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk-----~~~e~q~~~le~ql 183 (335)
.=+++.|.+++..++.+...--++-.....++.+..+...++..= +.-|+.||..= ...-.....|+.++
T Consensus 27 ~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~-----e~~A~~Al~~g~E~LAr~al~~~~~le~~~ 101 (225)
T COG1842 27 KMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKL-----EEKAELALQAGNEDLAREALEEKQSLEDLA 101 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555444444444444444444444444332 33444444321 22445667899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----CCcHHHHHHHHHHHHHhHHHHHHH
Q 019853 184 DQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVN----TSSALSAFEKMEEKVLTMESQADS 259 (335)
Q Consensus 184 e~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~~~AkAq~~v~~~~~~~~----~~~a~~~feRmEeki~~~EA~AeA 259 (335)
......+..+...+.+|+..+..++.+...++++....++......+...++ ..+..++...+ ++|...-.+.++
T Consensus 102 ~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~~~v~~~~~~~s~~sa~~~f-er~e~kiee~ea 180 (225)
T COG1842 102 KALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQEKVNRSLGGGSSSSAMAAF-ERMEEKIEEREA 180 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHH-HHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988877766554433 34554444444 345555555555
Q ss_pred hhcccCCChhHHHhhhccCCHHHHHHHHHH
Q 019853 260 LNQLTTDDLEGKFALLETSSVDDDLANLKK 289 (335)
Q Consensus 260 ~~eL~~~~Le~k~a~le~~~vddeLa~LKa 289 (335)
..+ ...++......+++++++.+..
T Consensus 181 ~a~-----~~~el~~~~~~dl~~e~a~~~~ 205 (225)
T COG1842 181 RAE-----AAAELAEGSGDDLDKEFAQAGA 205 (225)
T ss_pred HHH-----HhHHhhccCcccHHHHHHHhcc
Confidence 443 2333333334578888887655
No 13
>PRK10698 phage shock protein PspA; Provisional
Probab=97.34 E-value=0.06 Score=50.13 Aligned_cols=120 Identities=19% Similarity=0.230 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----CCcHHHHHHHHHHHHHh
Q 019853 177 NALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVN----TSSALSAFEKMEEKVLT 252 (335)
Q Consensus 177 ~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~~~AkAq~~v~~~~~~~~----~~~a~~~feRmEeki~~ 252 (335)
..+..++..++.+++.....+.+|+.++..++.++..++++...-.++.+.......++ +.+..++|.+++. ++.
T Consensus 95 ~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~~~~a~~~f~r-mE~ 173 (222)
T PRK10698 95 QKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGKLDEAMARFES-FER 173 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHH-HHH
Confidence 35788899999999999999999999999999999999999998888877766655443 4556666665543 222
Q ss_pred HHHHHHHhhcccCCChhHHHhhhccCCHHHHHHHHHHHcCCCCCCCCCCCCCCcCCCCCCCCCCChhhHHHHHHHHHHhh
Q 019853 253 MESQADSLNQLTTDDLEGKFALLETSSVDDDLANLKKELSGSSKKGELPPGRAAASSTNTAFPFRDAEIEKELNELRQRA 332 (335)
Q Consensus 253 ~EA~AeA~~eL~~~~Le~k~a~le~~~vddeLa~LKa~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (335)
.-.+.+|..+.. ......+++++++.|.. +++|+.||..|+.++
T Consensus 174 ki~~~Ea~aea~--------~~~~~~~l~~e~~~le~----------------------------~~~ve~ELa~LK~~~ 217 (222)
T PRK10698 174 RIDQMEAEAESH--------GFGKQKSLDQQFAELKA----------------------------DDEISEQLAALKAKM 217 (222)
T ss_pred HHHHHHHHHhHh--------hccCCCCHHHHHHHhhc----------------------------cchHHHHHHHHHHHh
Confidence 223333333221 01122357777776631 245999999999876
Q ss_pred h
Q 019853 333 K 333 (335)
Q Consensus 333 ~ 333 (335)
.
T Consensus 218 ~ 218 (222)
T PRK10698 218 K 218 (222)
T ss_pred c
Confidence 4
No 14
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=97.28 E-value=0.044 Score=50.35 Aligned_cols=122 Identities=16% Similarity=0.188 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH-----HHHHHHHHHHHHHH
Q 019853 109 LEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRR-----KSYADNANALKAQL 183 (335)
Q Consensus 109 reme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk-----~~~e~q~~~le~ql 183 (335)
.-+++.|.++...+..+...-.........++.++......+.. .++-|+.||..= ..+-.....++.++
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~-----~~~~A~~Al~~g~edLAr~al~~k~~~e~~~ 100 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEK-----WEKQAELALAAGREDLAREALQRKADLEEQA 100 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555544444555555555555444443 244455555441 23455667888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 019853 184 DQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVN 235 (335)
Q Consensus 184 e~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~~~AkAq~~v~~~~~~~~ 235 (335)
+.+..+++.+...+..|+..|.+++.++..++.+.....++..+......++
T Consensus 101 ~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~ 152 (221)
T PF04012_consen 101 ERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKKVN 152 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999998888887766665543
No 15
>KOG2910 consensus Uncharacterized conserved protein predicted to be involved in protein sorting [General function prediction only]
Probab=97.14 E-value=0.19 Score=45.69 Aligned_cols=74 Identities=19% Similarity=0.201 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 120 QATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNL 193 (335)
Q Consensus 120 ~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~le~qle~~~~~v~~L 193 (335)
+++-.+..++..+.+-..+++..+..-...|+..++.|+.|-|+-+|.+|..++.-+.....++-..++.+..+
T Consensus 16 rAIL~lK~QRdkl~qyqkR~e~~le~Er~~Ar~lird~rKdrAlllLKkKryQE~Ll~qt~~qL~nlEqmvsdi 89 (209)
T KOG2910|consen 16 RAILSLKTQRDKLKQYQKRLEKQLEAERQLARDLIRDGRKDRALLLLKKKRYQEELLTQTDNQLINLEQMVSDI 89 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444455555555566666667889999999999999999999999988877777776666655554
No 16
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.04 E-value=0.14 Score=57.27 Aligned_cols=146 Identities=20% Similarity=0.294 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQL 183 (335)
Q Consensus 104 LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~le~ql 183 (335)
+++.++++...+..++-.+-.+.+.-+++...++.+..++...+..+ +..-.+ ..+....+++++.++.++
T Consensus 804 ~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~---~k~~~d------~~~l~~~~~~ie~l~kE~ 874 (1293)
T KOG0996|consen 804 LEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAAV---LKKVVD------KKRLKELEEQIEELKKEV 874 (1293)
T ss_pred HHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhccCc------HHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555666666666666666666666665551 111111 123344455566666666
Q ss_pred HHHH------HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Q 019853 184 DQQK------NVVNNLVSNTRLL--------ESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEK 249 (335)
Q Consensus 184 e~~~------~~v~~Lk~~l~~L--------e~ki~e~k~kr~~LkAr~~~AkAq~~v~~~~~~~~~~~a~~~feRmEek 249 (335)
+++. +++.+|+..+..+ +++++....+++.+.+..+...+..+. ++.+...+...+.+++..
T Consensus 875 e~~qe~~~Kk~~i~~lq~~i~~i~~e~~q~qk~kv~~~~~~~~~l~~~i~k~~~~i~~----s~~~i~k~q~~l~~le~~ 950 (1293)
T KOG0996|consen 875 EELQEKAAKKARIKELQNKIDEIGGEKVQAQKDKVEKINEQLDKLEADIAKLTVAIKT----SDRNIAKAQKKLSELERE 950 (1293)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhhchhhHHhHHHHHHHHHHHHHHHHHHHHhHHHHhc----CcccHHHHHHHHHHHHHH
Confidence 6652 4444444444332 555566666666665544433333222 233333455566666666
Q ss_pred HHhHHHHHHHhhc
Q 019853 250 VLTMESQADSLNQ 262 (335)
Q Consensus 250 i~~~EA~AeA~~e 262 (335)
+..++.+.+.+.+
T Consensus 951 ~~~~e~e~~~L~e 963 (1293)
T KOG0996|consen 951 IEDTEKELDDLTE 963 (1293)
T ss_pred HHHHHHHHHHHHH
Confidence 7666666665543
No 17
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.69 E-value=0.52 Score=54.93 Aligned_cols=135 Identities=21% Similarity=0.234 Sum_probs=83.7
Q ss_pred hHHHHHHHHHHHHHHHhhccCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 78 LFDRLARVVKSYANAILSSFEDP---EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLAL 154 (335)
Q Consensus 78 if~Rl~~lira~in~~ldk~EDP---e~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL 154 (335)
+|+.|-+...+++-.-. +-.| ..+|+.+ -.......+++..+...-....++...+.++..++.+++.++..|.
T Consensus 258 lFk~lI~~~~~~~aad~--~r~~eERR~liEEA-ag~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~ 334 (1486)
T PRK04863 258 LFKHLITESTNYVAADY--MRHANERRVHLEEA-LELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAAS 334 (1486)
T ss_pred HHHHHhhhhhhhhHHHH--hhCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555544443322 2344 4777776 4577888888888888888888888888888888888888888876
Q ss_pred hcCcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 155 QKGEEDLA-REALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (335)
Q Consensus 155 ~~G~EdLA-reAL~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~Lk 215 (335)
+.-...-- .....++..+...+..+...++.+...+..++..+..++.++..++.+...++
T Consensus 335 kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLq 396 (1486)
T PRK04863 335 DHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELK 396 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65332211 12244455555666666666666666666555555555555554444444443
No 18
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.26 E-value=0.94 Score=52.29 Aligned_cols=57 Identities=14% Similarity=0.315 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 165 ALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSA 221 (335)
Q Consensus 165 AL~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~~~A 221 (335)
.+.++..++.++..+...++++...+..++..+..+..++..+..+++.++.+.+..
T Consensus 879 ~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 935 (1311)
T TIGR00606 879 NLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETS 935 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 777889999999999999999999999999999999999999988888877664433
No 19
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.17 E-value=0.55 Score=46.01 Aligned_cols=139 Identities=17% Similarity=0.223 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQL 183 (335)
Q Consensus 104 LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~le~ql 183 (335)
|+..+..|+.+...+...+..+-...-.+..+++.+..++..+...+.. +...+ -.+...+...+..+...+
T Consensus 154 L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e-~~~~D-------~~eL~~lr~eL~~~~~~i 225 (325)
T PF08317_consen 154 LEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEE-IESCD-------QEELEALRQELAEQKEEI 225 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhcC-------HHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444455555555544444333 22222 223333445555666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhHHHHH
Q 019853 184 DQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMESQA 257 (335)
Q Consensus 184 e~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~~~AkAq~~v~~~~~~~~~~~a~~~feRmEeki~~~EA~A 257 (335)
+..+..+..++..+..++.+|++...++..+.+..+.++-... ...++ ....+.+++.++..++...
T Consensus 226 ~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~---~~r~~----t~~Ev~~Lk~~~~~Le~~~ 292 (325)
T PF08317_consen 226 EAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIRE---ECRGW----TRSEVKRLKAKVDALEKLT 292 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCC----CHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666667766666666665554432221 12232 2345667777766665443
No 20
>PRK09039 hypothetical protein; Validated
Probab=96.07 E-value=1 Score=44.53 Aligned_cols=46 Identities=20% Similarity=0.209 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 176 ANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSA 221 (335)
Q Consensus 176 ~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~~~A 221 (335)
+..|..+++.++.++..|...|..++.+..+.+.+++.|..+.+.+
T Consensus 139 V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 139 VELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444444444444444333333
No 21
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.01 E-value=0.46 Score=44.40 Aligned_cols=36 Identities=17% Similarity=0.118 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 103 ILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKA 138 (335)
Q Consensus 103 ~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~ 138 (335)
.+...+.+....+.++...++.+...-..++..+..
T Consensus 19 ~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~ 54 (237)
T PF00261_consen 19 EAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELER 54 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444444444444444444444333333
No 22
>PRK09039 hypothetical protein; Validated
Probab=95.85 E-value=1.5 Score=43.35 Aligned_cols=53 Identities=15% Similarity=0.126 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 167 KRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQ 219 (335)
Q Consensus 167 ~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~~ 219 (335)
.+...+.+.+...+..+.+....|..|+.++..|+.++..+...++....+..
T Consensus 116 ~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~ 168 (343)
T PRK09039 116 GRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDR 168 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556666666666666677777777777777776666666666666553
No 23
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=95.82 E-value=1.3 Score=49.61 Aligned_cols=18 Identities=11% Similarity=0.326 Sum_probs=14.1
Q ss_pred ChhhHHHHHHHHHHhhhc
Q 019853 317 RDAEIEKELNELRQRAKD 334 (335)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~ 334 (335)
...++..+++++..+++.
T Consensus 952 ~~~~l~~~l~~l~~~i~~ 969 (1164)
T TIGR02169 952 SLEDVQAELQRVEEEIRA 969 (1164)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 456888899999888764
No 24
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=95.64 E-value=4.2 Score=46.51 Aligned_cols=28 Identities=14% Similarity=0.158 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 122 TAQVLASQKRLENKCKAAEQASEDWYRK 149 (335)
Q Consensus 122 lA~v~A~~k~le~kl~~~~~~~~~~e~r 149 (335)
+..+......++.++..+..++..|..+
T Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 822 (1163)
T COG1196 795 LEELEEELEEAERRLDALERELESLEQR 822 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333344444444444443
No 25
>PRK02224 chromosome segregation protein; Provisional
Probab=95.47 E-value=5.1 Score=44.03 Aligned_cols=93 Identities=18% Similarity=0.247 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 119 RQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTR 198 (335)
Q Consensus 119 r~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~ 198 (335)
...+.........++.++..++..+.+|.+.+..+...-.+ +..+...+..++..+...+.... .+..+...+.
T Consensus 529 ~e~le~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~le-~~~~~~~~i~ 602 (880)
T PRK02224 529 RETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEE-----AREEVAELNSKLAELKERIESLE-RIRTLLAAIA 602 (880)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-----HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 33344444445555566666666666666555554433332 22344455555555555555555 3555555555
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 019853 199 LLESKIQEARSKKDTLKAR 217 (335)
Q Consensus 199 ~Le~ki~e~k~kr~~LkAr 217 (335)
.++..+.+++.++..+..+
T Consensus 603 ~~~~~~~~~~~~~~~l~~~ 621 (880)
T PRK02224 603 DAEDEIERLREKREALAEL 621 (880)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555555555555444443
No 26
>PRK04863 mukB cell division protein MukB; Provisional
Probab=95.45 E-value=3.4 Score=48.45 Aligned_cols=94 Identities=14% Similarity=0.158 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 125 VLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREAL--KRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLES 202 (335)
Q Consensus 125 v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL--~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ 202 (335)
....++...+++...+....+..+.. .-+...-..|.+++- .+...+...+..+...+......+..+...+...+.
T Consensus 291 ~r~rk~eA~kkLe~tE~nL~rI~diL-~ELe~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~ee 369 (1486)
T PRK04863 291 LRRELYTSRRQLAAEQYRLVEMAREL-AELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNE 369 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555554444 223333333333322 222222222223344455555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019853 203 KIQEARSKKDTLKARAQ 219 (335)
Q Consensus 203 ki~e~k~kr~~LkAr~~ 219 (335)
++++.+.+...+..+..
T Consensus 370 eLeeleeeleeleeEle 386 (1486)
T PRK04863 370 VVEEADEQQEENEARAE 386 (1486)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555555555554443
No 27
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=95.44 E-value=4.1 Score=45.61 Aligned_cols=11 Identities=36% Similarity=0.549 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 019853 104 LEQAVLEMNDD 114 (335)
Q Consensus 104 LdQ~Ireme~~ 114 (335)
+++.+.+++..
T Consensus 270 ~~~~~~~~~~~ 280 (1164)
T TIGR02169 270 IEQLLEELNKK 280 (1164)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 28
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=95.27 E-value=2.6 Score=39.40 Aligned_cols=120 Identities=18% Similarity=0.251 Sum_probs=73.5
Q ss_pred hhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Q 019853 94 LSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYA 173 (335)
Q Consensus 94 ldk~EDPe~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e 173 (335)
+..+|+-....+.-+......|..+.+..-..-...+.++.+.......+..++.+...|-.. |..+-.+.....
T Consensus 45 i~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~-----~ee~e~k~~E~~ 119 (237)
T PF00261_consen 45 IQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQSDEERIEELEQQLKEAKRR-----AEEAERKYEEVE 119 (237)
T ss_dssp HHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH-----HHHHHHHHHHCH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHH
Confidence 333343333444445556666666666666666677777777777777777777777776543 334555555556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 174 DNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARA 218 (335)
Q Consensus 174 ~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~ 218 (335)
..+..++..++.....++.+...+..|+..|..+.+.+..|-+..
T Consensus 120 rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~ 164 (237)
T PF00261_consen 120 RKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASE 164 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhh
Confidence 666666666666666666666666666666666655555554443
No 29
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=95.13 E-value=2.1 Score=46.40 Aligned_cols=59 Identities=17% Similarity=0.340 Sum_probs=34.4
Q ss_pred CCCcHHHHHHHHHHHHHhHHHHHHHhhcc-----c-CCChhHHHhhhcc--CCHHHHHHHHHHHcCC
Q 019853 235 NTSSALSAFEKMEEKVLTMESQADSLNQL-----T-TDDLEGKFALLET--SSVDDDLANLKKELSG 293 (335)
Q Consensus 235 ~~~~a~~~feRmEeki~~~EA~AeA~~eL-----~-~~~Le~k~a~le~--~~vddeLa~LKa~l~~ 293 (335)
+....+.+|.-|.||-.++|.-..|-.-+ + -.+--.++..+.+ -.-|.|+..||+++..
T Consensus 588 ~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~ 654 (697)
T PF09726_consen 588 DTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQ 654 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567889999999999888655442111 0 0012223333222 1358888889987744
No 30
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.10 E-value=2.4 Score=41.49 Aligned_cols=47 Identities=11% Similarity=0.162 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYR 148 (335)
Q Consensus 102 ~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~ 148 (335)
.+++..+..+.+.+..++...+.+......+..-+..+......+..
T Consensus 145 ~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~ 191 (325)
T PF08317_consen 145 QLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEE 191 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555444444444444444444443333333
No 31
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=95.07 E-value=7.6 Score=43.68 Aligned_cols=108 Identities=18% Similarity=0.205 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcC-cHHHHHHHHHHHHHHHHHHHH
Q 019853 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKA-QLALQKG-EEDLAREALKRRKSYADNANA 178 (335)
Q Consensus 101 e~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA-~~AL~~G-~EdLAreAL~rk~~~e~q~~~ 178 (335)
..-+.+..++.+..|.+.+.-+-++.....++++++.....++.++..-| ..++.-+ -+||+++ +...+..++.
T Consensus 677 ~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n~~e~~~~~~~~~~~l~~e----i~~~~~eIe~ 752 (1074)
T KOG0250|consen 677 ILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKNTAEEKQVDISKLEDLARE----IKKKEKEIEE 752 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHHH----HHHHHHHHHH
Confidence 34555566666666666666666666666666666666666666655531 1111111 1334333 3344445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 179 LKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKD 212 (335)
Q Consensus 179 le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~ 212 (335)
++..++++...+..+......++..+...+.+..
T Consensus 753 ~~~~~e~l~~e~e~~~~e~~e~~~~~~~~~~~l~ 786 (1074)
T KOG0250|consen 753 KEAPLEKLKEELEHIELEAQELEEYYAAGREKLQ 786 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555444444444444333
No 32
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=95.00 E-value=4.5 Score=40.75 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhhccc
Q 019853 239 ALSAFEKMEEKVLTMESQADSLNQLT 264 (335)
Q Consensus 239 a~~~feRmEeki~~~EA~AeA~~eL~ 264 (335)
.....+++|..+.++|+...++.+|.
T Consensus 264 lEt~q~~leqeva~le~yyQ~y~~lr 289 (499)
T COG4372 264 LETAQARLEQEVAQLEAYYQAYVRLR 289 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777888888887777664
No 33
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=94.97 E-value=8.6 Score=43.75 Aligned_cols=128 Identities=14% Similarity=0.194 Sum_probs=63.7
Q ss_pred ccccCchHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHH
Q 019853 72 LNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENK------CKAAEQASED 145 (335)
Q Consensus 72 ~~~~Msif~Rl~~lira~in~~ldk~EDPe~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~k------l~~~~~~~~~ 145 (335)
|+..|.+-----.-+.+.|++.+.++-|=+.||. ....++..+......+....++.+.- +.+.-++++.
T Consensus 1502 L~l~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL~----~T~~di~ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~ 1577 (1758)
T KOG0994|consen 1502 LALELPLTPEQIQQLTGEIQERVASLPNVDAILS----RTKGDIARAENLQSEAERARSRAEDVKGQAEDVVEALEEADV 1577 (1758)
T ss_pred HhccCCCCHHHHHHHHHHHHHHHHhcccHHHHHH----hhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344443333333455777777888888555555 44455555555555555444444332 2233344555
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 146 WYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKK 211 (335)
Q Consensus 146 ~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr 211 (335)
-+..|+.|++.-+.++ ...++.+..+++.....+..+.....++.+|+.+++++|.+.
T Consensus 1578 Aq~~a~~ai~~a~~~~--------~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~ 1635 (1758)
T KOG0994|consen 1578 AQGEAQDAIQGADRDI--------RLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKA 1635 (1758)
T ss_pred HHHHHHHHHHhhHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666665544332 222333444444444444444444455555555555554443
No 34
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=94.95 E-value=8.9 Score=43.89 Aligned_cols=14 Identities=29% Similarity=0.650 Sum_probs=9.0
Q ss_pred hHHHHHHHHHHhhh
Q 019853 320 EIEKELNELRQRAK 333 (335)
Q Consensus 320 ~~~~~~~~~~~~~~ 333 (335)
+++.++..+..++.
T Consensus 946 ~~~~~i~~le~~i~ 959 (1163)
T COG1196 946 ELEREIERLEEEIE 959 (1163)
T ss_pred HHHHHHHHHHHHHH
Confidence 66777766666644
No 35
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=94.91 E-value=2.7 Score=47.49 Aligned_cols=81 Identities=11% Similarity=0.041 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Q 019853 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALK 180 (335)
Q Consensus 101 e~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~le 180 (335)
..++...+++.+....+++.++-.+-+.....++.+...+++..--+. +|-.|-++..+++..++.|+
T Consensus 1565 ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~------------~~~~a~q~~~eL~~~~e~lk 1632 (1758)
T KOG0994|consen 1565 AEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEK------------LATSATQQLGELETRMEELK 1632 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666666666666655555555555554443333 33344455555555555555
Q ss_pred HHHHHHHHHHHHH
Q 019853 181 AQLDQQKNVVNNL 193 (335)
Q Consensus 181 ~qle~~~~~v~~L 193 (335)
..+.+......+.
T Consensus 1633 ~~~~qns~~A~~a 1645 (1758)
T KOG0994|consen 1633 HKAAQNSAEAKQA 1645 (1758)
T ss_pred HHHHhccHHHHHH
Confidence 5554443333333
No 36
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=94.91 E-value=7.8 Score=42.97 Aligned_cols=160 Identities=18% Similarity=0.278 Sum_probs=68.7
Q ss_pred ccCchHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 74 TRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA 153 (335)
Q Consensus 74 ~~Msif~Rl~~lira~in~~ldk~EDPe~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~A 153 (335)
+.|++-..|+++..--=.--+.+.||-.++.+ +..|.=++.++..=-.++|..+-.|++++.+.+.+..+ |..|
T Consensus 225 te~eLr~QvrdLtEkLetlR~kR~EDk~Kl~E--lekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~ke----aqe~ 298 (1243)
T KOG0971|consen 225 TEEELRAQVRDLTEKLETLRLKRAEDKAKLKE--LEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKE----AQEA 298 (1243)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH
Confidence 45553333333332222222334567666654 33444444444444455556666666666655444322 1112
Q ss_pred HhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019853 154 LQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGN 233 (335)
Q Consensus 154 L~~G~EdLAreAL~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~~~AkAq~~v~~~~~~ 233 (335)
-....+++|- +.+.++-+.-.-+-++...+.|...+..++.+++++...++.|++.+.-- |+
T Consensus 299 ke~~k~emad--------~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeek----------G~ 360 (1243)
T KOG0971|consen 299 KERYKEEMAD--------TADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEK----------GS 360 (1243)
T ss_pred HHHHHHHHHH--------HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CC
Confidence 2222222221 11111111111122334444555555555555555555555555433221 22
Q ss_pred CCCCcHHHHHHHHHHHHHhHHHHH
Q 019853 234 VNTSSALSAFEKMEEKVLTMESQA 257 (335)
Q Consensus 234 ~~~~~a~~~feRmEeki~~~EA~A 257 (335)
-......-.|-++|+.-.++-...
T Consensus 361 ~~~~~ss~qfkqlEqqN~rLKdal 384 (1243)
T KOG0971|consen 361 DGQAASSYQFKQLEQQNARLKDAL 384 (1243)
T ss_pred CCcccchHHHHHHHHHHHHHHHHH
Confidence 222223356777777665554433
No 37
>KOG3232 consensus Vacuolar assembly/sorting protein DID2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.61 E-value=3.3 Score=37.33 Aligned_cols=117 Identities=24% Similarity=0.296 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 121 ATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLL 200 (335)
Q Consensus 121 ~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~L 200 (335)
.+=.+.-..++|+++-..+..+-..-..++..|+++|+.|.||--++--..-.++ .+ ++
T Consensus 10 ~lf~LkF~sk~L~r~a~kceKeEK~Ek~K~kkAi~kgN~dvArIyAeNAIRkkne-------------~~-----n~--- 68 (203)
T KOG3232|consen 10 HLFDLKFTSKQLQRQAKKCEKEEKAEKAKLKKAIQKGNMDVARIYAENAIRKKNE-------------AV-----NY--- 68 (203)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH-------------HH-----HH---
Confidence 3444445567777777777777777778899999999999998653321111111 11 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----------CCCcHHHHHHHHHHHHHhHHHHHHHhhc
Q 019853 201 ESKIQEARSKKDTLKARAQSAKTATKVSEMLGNV-----------NTSSALSAFEKMEEKVLTMESQADSLNQ 262 (335)
Q Consensus 201 e~ki~e~k~kr~~LkAr~~~AkAq~~v~~~~~~~-----------~~~~a~~~feRmEeki~~~EA~AeA~~e 262 (335)
=.+-.+.+.+.+|.+.|-+..++...++|+ |..-....++++|...+.++-..+.+..
T Consensus 69 ----LrlssRvDAVaaRvqTavtmr~Vt~sM~gVvK~md~alktmNLekis~~MDkFE~qFedldvqt~~me~ 137 (203)
T KOG3232|consen 69 ----LRLSSRVDAVAARVQTAVTMRKVTKSMAGVVKSMDSALKTMNLEKISQLMDKFEKQFEDLDVQTEVMEK 137 (203)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 123445666677777777766666655543 3334456677778888877777776654
No 38
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.59 E-value=2.4 Score=38.84 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019853 161 LAREALKRRKSYADNANALKAQL 183 (335)
Q Consensus 161 LAreAL~rk~~~e~q~~~le~ql 183 (335)
-|-..|..|+.||.+...|.+|-
T Consensus 64 rAlrVLkQKK~yE~q~d~L~~Qs 86 (218)
T KOG1655|consen 64 RALRVLKQKKMYENQKDSLDQQS 86 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 45667888888888877776663
No 39
>PRK02224 chromosome segregation protein; Provisional
Probab=94.46 E-value=6.8 Score=43.05 Aligned_cols=11 Identities=9% Similarity=0.066 Sum_probs=5.2
Q ss_pred chHHHHHHHHH
Q 019853 77 NLFDRLARVVK 87 (335)
Q Consensus 77 sif~Rl~~lir 87 (335)
.+++.+...+.
T Consensus 468 ~~~~~~~~~~~ 478 (880)
T PRK02224 468 ETIEEDRERVE 478 (880)
T ss_pred hhHHHHHHHHH
Confidence 45554444433
No 40
>KOG3231 consensus Predicted assembly/vacuolar sorting protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.43 E-value=3.5 Score=36.90 Aligned_cols=192 Identities=19% Similarity=0.247 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 106 QAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQ 185 (335)
Q Consensus 106 Q~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~le~qle~ 185 (335)
..+|+-...|.+..+.+- ..+..++++-.+++.+|.+ --..|+.|.+|..+.+.-++..|-..
T Consensus 11 e~~ren~ReLRkt~Rdie---rdRr~me~~Ek~LElEIkk-------~Aa~GnndAcr~LAKQLV~lRkQKtr------- 73 (208)
T KOG3231|consen 11 EVIRENNRELRKTQRDIE---RDRRAMEKQEKQLELEIKK-------MAAIGNNDACRVLAKQLVHLRKQKTR------- 73 (208)
T ss_pred HHHHHhHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHH-------HHHccCcHHHHHHHHHHHHHHHhhhh-------
Confidence 344455555555554433 3445555555555555544 34678888888765433333322111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhHHHHHHHhhcccC
Q 019853 186 QKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMESQADSLNQLTT 265 (335)
Q Consensus 186 ~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~~~AkAq~~v~~~~~~~~~~~a~~~feRmEeki~~~EA~AeA~~eL~~ 265 (335)
.-..-..+.-+..+-.-+.....+--|.-..+++.+.+|..+.--.....+..|... ...|+-.-+-+ .
T Consensus 74 ----t~a~s~ki~s~~~QnK~M~s~~km~~AMgTTaKTM~amNk~M~pek~~~tmr~FQ~a---nmKMemTeEMi----N 142 (208)
T KOG3231|consen 74 ----TFAVSSKITSMSTQNKVMNSQMKMAGAMGTTAKTMQAMNKKMDPEKTLQTMRNFQKA---NMKMEMTEEMI----N 142 (208)
T ss_pred ----hhhhhhhhhhhHHHHHHHHHHHHHHHHhchHHHHHHHHHccCCHHHHHHHHHHHHHH---HHHhhhHHHHH----H
Confidence 111111111111111113333333333334455555555544322222233333333 33344333333 3
Q ss_pred CChhHHHhhhcc-----CCHHHHHHHHHHHcCCCCCCCCCCCCCCcCCCCCCCCCCChhhHHHHHHHHH
Q 019853 266 DDLEGKFALLET-----SSVDDDLANLKKELSGSSKKGELPPGRAAASSTNTAFPFRDAEIEKELNELR 329 (335)
Q Consensus 266 ~~Le~k~a~le~-----~~vddeLa~LKa~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (335)
|.||+=|..-+. .-|+.+|..+=-++++. ....|+.++..+++ ..|-..++||..|-.||
T Consensus 143 DTLDdild~sgDeeEs~aiVNqVLDEIGIEisgK--ma~~P~a~s~~~~s--t~kat~~Die~QLa~Lr 207 (208)
T KOG3231|consen 143 DTLDDILDGSGDEEESQAIVNQVLDEIGIEISGK--MAKAPSARSLPSAS--TSKATISDIERQLAALR 207 (208)
T ss_pred hhHHHHhcCCCcHHHHHHHHHHHHHHhhhhhcch--hccCCccCCCCccc--cCCCcHHHHHHHHHHhc
Confidence 566666654442 13788888887777553 33345443321222 22335566999888776
No 41
>PRK11637 AmiB activator; Provisional
Probab=94.41 E-value=6.4 Score=39.83 Aligned_cols=41 Identities=17% Similarity=0.174 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASE 144 (335)
Q Consensus 104 LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~ 144 (335)
++..|.+....|......+..+-..-..++.++..++.++.
T Consensus 80 l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~ 120 (428)
T PRK11637 80 QEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQA 120 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444333
No 42
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=94.34 E-value=8 Score=46.34 Aligned_cols=50 Identities=12% Similarity=0.229 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA 153 (335)
Q Consensus 104 LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~A 153 (335)
++..|..+++.+...+..++.+...++.++..+.++...+...++++..+
T Consensus 962 ~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l 1011 (1930)
T KOG0161|consen 962 AENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSL 1011 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555555555555555555555555443
No 43
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=94.30 E-value=10 Score=43.61 Aligned_cols=16 Identities=19% Similarity=0.300 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 019853 104 LEQAVLEMNDDLVKMR 119 (335)
Q Consensus 104 LdQ~Ireme~~L~kar 119 (335)
|.+.+..++..|..+.
T Consensus 605 L~~~l~~~~~~l~~~~ 620 (1201)
T PF12128_consen 605 LRERLEQAEDQLQSAE 620 (1201)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 44
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=94.17 E-value=13 Score=42.70 Aligned_cols=59 Identities=15% Similarity=0.245 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcH
Q 019853 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEE 159 (335)
Q Consensus 101 e~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~E 159 (335)
..-++..+-.....+..++..+.......++.+.++..+......|..+...++..-..
T Consensus 623 ~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 681 (1201)
T PF12128_consen 623 QEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKE 681 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666667778888888888888888888888888888888888888887766443
No 45
>PRK11637 AmiB activator; Provisional
Probab=94.14 E-value=5.2 Score=40.47 Aligned_cols=34 Identities=15% Similarity=0.201 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 176 ANALKAQLDQQKNVVNNLVSNTRLLESKIQEARS 209 (335)
Q Consensus 176 ~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~ 209 (335)
+..++.++...+..+..++..+..++.+|...+.
T Consensus 91 i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~ 124 (428)
T PRK11637 91 LRETQNTLNQLNKQIDELNASIAKLEQQQAAQER 124 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444444443333
No 46
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=93.93 E-value=6.3 Score=38.65 Aligned_cols=137 Identities=15% Similarity=0.193 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQL 183 (335)
Q Consensus 104 LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~le~ql 183 (335)
|+..+..|+.+...+...+..+-.-.-.+..++..+..++..+.+.....=... .+....+ .+.+.....++
T Consensus 149 L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d-~~eL~~l-------k~~l~~~~~ei 220 (312)
T smart00787 149 LDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCD-PTELDRA-------KEKLKKLLQEI 220 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCC-HHHHHHH-------HHHHHHHHHHH
Confidence 333334444444444444443333334444444444444444333333322222 2222222 23444444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhHHH
Q 019853 184 DQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMES 255 (335)
Q Consensus 184 e~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~~~AkAq~~v~~~~~~~~~~~a~~~feRmEeki~~~EA 255 (335)
......+..++.++..++.+|++...++..+....+.|+.... ...+++ ...+.++++++..++.
T Consensus 221 ~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~---~~r~~t----~~Ei~~Lk~~~~~Le~ 285 (312)
T smart00787 221 MIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLE---QCRGFT----FKEIEKLKEQLKLLQS 285 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCCC----HHHHHHHHHHHHHHHH
Confidence 5555555555555555566666666666555554444433211 122332 2455566666655543
No 47
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=93.77 E-value=8.4 Score=46.20 Aligned_cols=15 Identities=33% Similarity=0.634 Sum_probs=9.9
Q ss_pred CHHHHHHHHHHHcCC
Q 019853 279 SVDDDLANLKKELSG 293 (335)
Q Consensus 279 ~vddeLa~LKa~l~~ 293 (335)
+...+|+.|+.++..
T Consensus 1129 dL~~ele~l~~~Lee 1143 (1930)
T KOG0161|consen 1129 DLSEELEELKEELEE 1143 (1930)
T ss_pred HHHHHHHHHHHHHHH
Confidence 466677777777644
No 48
>PHA02562 46 endonuclease subunit; Provisional
Probab=93.66 E-value=7.5 Score=40.24 Aligned_cols=22 Identities=14% Similarity=0.353 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHhh
Q 019853 240 LSAFEKMEEKVLTMESQADSLN 261 (335)
Q Consensus 240 ~~~feRmEeki~~~EA~AeA~~ 261 (335)
...+..+++.+...+.+.+.+.
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~ 319 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLD 319 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777776666544
No 49
>KOG3229 consensus Vacuolar sorting protein VPS24 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.60 E-value=6 Score=36.61 Aligned_cols=72 Identities=15% Similarity=0.152 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 128 SQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRL 199 (335)
Q Consensus 128 ~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~ 199 (335)
+..++.+++-.++..-.+.+...+.|.++||-+-++..+.+.......+..+-..-+++....-+|.+++.-
T Consensus 26 e~r~ldrqir~iqree~kv~~~iK~aAKknD~~t~~iLAKEiv~srk~v~Rly~sKAqlnSv~M~l~eqla~ 97 (227)
T KOG3229|consen 26 EGRQLDRQIRDIQREEEKVQKSIKQAAKKNDKDTCRILAKEIVQSRKAVKRLYESKAQLNSVSMQLKEQLAT 97 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHHHHHHHH
Confidence 345566777777777778888888899999999998888887777777777776666666666666655543
No 50
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=93.46 E-value=4.2 Score=42.90 Aligned_cols=193 Identities=16% Similarity=0.254 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHH---HHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 122 TAQVLASQKRLENKCKAAE-QASEDWYRK---AQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNT 197 (335)
Q Consensus 122 lA~v~A~~k~le~kl~~~~-~~~~~~e~r---A~~AL~~G~EdLAreAL~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l 197 (335)
..+....-...+.++.++. ....+.+.. |..++...+---|+..+. ..+..+..++.++......+..|...-
T Consensus 55 ~Gqt~~~fe~w~~~w~~i~~~~~~~ie~~L~~ae~~~~~~rf~ka~~~i~---~~~~~l~~~e~~i~~i~~~l~~L~~~e 131 (560)
T PF06160_consen 55 TGQTEEKFEEWRQKWDEIVTKQLPEIEEQLFEAEEYADKYRFKKAKQAIK---EIEEQLDEIEEDIKEILDELDELLESE 131 (560)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcccHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555566666666655 333444433 455555666555555433 333344444444444444444443333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhHHHHHHHhhccc--CCChhHHHhhh
Q 019853 198 RLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMESQADSLNQLT--TDDLEGKFALL 275 (335)
Q Consensus 198 ~~Le~ki~e~k~kr~~LkAr~~~AkAq~~v~~~~~~~~~~~a~~~feRmEeki~~~EA~AeA~~eL~--~~~Le~k~a~l 275 (335)
.+-+..+.+ ++-+++..+-. +......+ +.+++.+++++...+....-+.++. ||-++++ ..+
T Consensus 132 ~~nr~~i~~-------l~~~y~~lrk~--ll~~~~~~-----G~a~~~Le~~L~~ie~~F~~f~~lt~~GD~~~A~-eil 196 (560)
T PF06160_consen 132 EKNREEIEE-------LKEKYRELRKE--LLAHSFSY-----GPAIEELEKQLENIEEEFSEFEELTENGDYLEAR-EIL 196 (560)
T ss_pred HHHHHHHHH-------HHHHHHHHHHH--HHHhhhhh-----chhHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-HHH
Confidence 333333333 33333332221 22212222 2466777777777777777666663 3322221 000
Q ss_pred ccCCHHHHHHHHHHHcCCCCC-----CCCCCCCCCc-----CCCCCCCCCCChhhHHHHHHHHHHhhhc
Q 019853 276 ETSSVDDDLANLKKELSGSSK-----KGELPPGRAA-----ASSTNTAFPFRDAEIEKELNELRQRAKD 334 (335)
Q Consensus 276 e~~~vddeLa~LKa~l~~~~~-----~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (335)
..++.++..|+..|..=++ .+.+|.-=.. ..=...+|.|...+|+.+|++++.++++
T Consensus 197 --~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~~gy~l~~~~i~~~i~~i~~~l~~ 263 (560)
T PF06160_consen 197 --EKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYREMEEEGYYLEHLDIEEEIEQIEEQLEE 263 (560)
T ss_pred --HHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
Confidence 0123333333333222111 1111111000 0013345889999999999999888753
No 51
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=93.35 E-value=5 Score=34.88 Aligned_cols=105 Identities=15% Similarity=0.200 Sum_probs=57.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Q 019853 99 DPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANA 178 (335)
Q Consensus 99 DPe~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~ 178 (335)
|+...++..+.++++...+....+..+-..-..++.+++.++..+......+...-..+-. + + .+...+..
T Consensus 14 ~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~--~-E------~l~rriq~ 84 (143)
T PF12718_consen 14 DRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSN--A-E------QLNRRIQL 84 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh--H-H------HHHhhHHH
Confidence 4444577777777777777777777776666667777777776666665555443222110 0 1 33444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 179 LKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKD 212 (335)
Q Consensus 179 le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~ 212 (335)
|+.+++.....+......++....+..++.++..
T Consensus 85 LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~ 118 (143)
T PF12718_consen 85 LEEELEEAEKKLKETTEKLREADVKAEHFERKVK 118 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4444444444444444444444444444444433
No 52
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=93.27 E-value=13 Score=39.32 Aligned_cols=52 Identities=13% Similarity=0.180 Sum_probs=26.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 98 EDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRK 149 (335)
Q Consensus 98 EDPe~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~r 149 (335)
++...-|...|..|-+.+.+-..+-..+.-....+...+..+..+.......
T Consensus 281 ~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~E 332 (569)
T PRK04778 281 EEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEE 332 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555555555555444444333
No 53
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=93.18 E-value=17 Score=40.50 Aligned_cols=117 Identities=15% Similarity=0.239 Sum_probs=89.0
Q ss_pred CCCcccccCchHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 68 GGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWY 147 (335)
Q Consensus 68 ~~~~~~~~Msif~Rl~~lira~in~~ldk~EDPe~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e 147 (335)
|||+-+..-+=|++|-. -...+.+.|=++-|-..--.|.+..+.+.+..-+..+..+...+.+|.++++.++..+.++.
T Consensus 359 G~~~~~~ss~qfkqlEq-qN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlk 437 (1243)
T KOG0971|consen 359 GSDGQAASSYQFKQLEQ-QNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLK 437 (1243)
T ss_pred CCCCcccchHHHHHHHH-HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45543444456777753 34566666667777655666777788889999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 148 RKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQK 187 (335)
Q Consensus 148 ~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~le~qle~~~ 187 (335)
++.-.|| |-|+..-....++-.+|+.+..|+..+.+++
T Consensus 438 EQVDAAl--GAE~MV~qLtdknlnlEekVklLeetv~dlE 475 (1243)
T KOG0971|consen 438 EQVDAAL--GAEEMVEQLTDKNLNLEEKVKLLEETVGDLE 475 (1243)
T ss_pred HHHHHhh--cHHHHHHHHHhhccCHHHHHHHHHHHHHHHH
Confidence 9999987 5566777777777777777777776665543
No 54
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=92.92 E-value=10 Score=37.23 Aligned_cols=21 Identities=19% Similarity=0.281 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019853 165 ALKRRKSYADNANALKAQLDQ 185 (335)
Q Consensus 165 AL~rk~~~e~q~~~le~qle~ 185 (335)
...+...+...+..+++..+.
T Consensus 177 l~~~~~~L~~e~~~L~~~~~e 197 (312)
T smart00787 177 LRDRKDALEEELRQLKQLEDE 197 (312)
T ss_pred HHHHHHHHHHHHHHHHHhHHH
Confidence 334444444444444444333
No 55
>PTZ00464 SNF-7-like protein; Provisional
Probab=92.79 E-value=8.1 Score=35.82 Aligned_cols=18 Identities=22% Similarity=0.270 Sum_probs=14.9
Q ss_pred CCChhhHHHHHHHHHHhh
Q 019853 315 PFRDAEIEKELNELRQRA 332 (335)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~ 332 (335)
.|+++||+.||++|-...
T Consensus 156 ~~DEdELe~ELe~Le~e~ 173 (211)
T PTZ00464 156 DIDEDEMLGELDALDFDM 173 (211)
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 488999999999987754
No 56
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.79 E-value=18 Score=41.23 Aligned_cols=51 Identities=10% Similarity=0.154 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLAL 154 (335)
Q Consensus 104 LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL 154 (335)
++-....+......++.....+-+.....+..++.+...+.+++...+.+.
T Consensus 375 ~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~ 425 (1293)
T KOG0996|consen 375 IKERAKELKNKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKAR 425 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344444444444444555555555555555555544443
No 57
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.61 E-value=15 Score=40.11 Aligned_cols=146 Identities=12% Similarity=0.213 Sum_probs=74.9
Q ss_pred chHHHHHHHHHHHHH-----HHhhccCCH-----HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 77 NLFDRLARVVKSYAN-----AILSSFEDP-----EKILEQAVLEMNDD-LVKMRQATAQVLASQKRLENKCKAAEQASED 145 (335)
Q Consensus 77 sif~Rl~~lira~in-----~~ldk~EDP-----e~~LdQ~Ireme~~-L~kar~~lA~v~A~~k~le~kl~~~~~~~~~ 145 (335)
++-..+..++....+ ...++...| -.+|-+++.-+.++ +.+....-..+...-+.++.++++...++.+
T Consensus 504 sF~~~Ik~lL~r~~~qPill~s~~k~~~p~~~E~l~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~ 583 (717)
T PF10168_consen 504 SFEKHIKSLLQRSSSQPILLKSSDKSSSPSPQECLELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQE 583 (717)
T ss_pred hHHHHHHHHhcCCCCCCeecCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556777766533 123555543 26666776666666 2333333333333334444444444444444
Q ss_pred HHHHHHHHHhcCcHHHHH---HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 146 WYRKAQLALQKGEEDLAR---EALKRRKSYADNANALKAQLDQ----QKNVVNNLVSNTRLLESKIQEARSKKDTLKARA 218 (335)
Q Consensus 146 ~e~rA~~AL~~G~EdLAr---eAL~rk~~~e~q~~~le~qle~----~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~ 218 (335)
.++. +..++...+.||. .+..+...+...++.+-..+.. ......+++..++.++.++..++...+.++.+.
T Consensus 584 l~e~-~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~ 662 (717)
T PF10168_consen 584 LQEE-RKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQLQDLKASIEQLKKKL 662 (717)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443 2223333333442 2333444444444444343332 334456667777777777777777777777766
Q ss_pred HHHHH
Q 019853 219 QSAKT 223 (335)
Q Consensus 219 ~~AkA 223 (335)
+..+.
T Consensus 663 ~~Q~~ 667 (717)
T PF10168_consen 663 DYQQR 667 (717)
T ss_pred HHHHH
Confidence 65443
No 58
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=92.60 E-value=16 Score=38.83 Aligned_cols=104 Identities=18% Similarity=0.205 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 107 AVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQ 186 (335)
Q Consensus 107 ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~le~qle~~ 186 (335)
.++++...+.+....++.....+-.+.+-.+...+.-......++.++.--.+.+.+..+.+.+.+.+.-..+..++..+
T Consensus 122 e~~~lk~~lee~~~el~~~k~qq~~v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~~~q~~~l 201 (629)
T KOG0963|consen 122 ENEELKEELEEVNNELADLKTQQVTVRNLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREAGLKDEEQNLQEQLEEL 201 (629)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888888888888888887777777777777777788888877777888899999888888888888888888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 187 KNVVNNLVSNTRLLESKIQEARSK 210 (335)
Q Consensus 187 ~~~v~~Lk~~l~~Le~ki~e~k~k 210 (335)
+..+..|...+..-..++-+++++
T Consensus 202 e~ki~~lq~a~~~t~~el~~~~s~ 225 (629)
T KOG0963|consen 202 EKKISSLQSAIEDTQNELFDLKSK 225 (629)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHh
Confidence 777777777666666666666655
No 59
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=92.58 E-value=5.8 Score=33.63 Aligned_cols=101 Identities=19% Similarity=0.256 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 107 AVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWY---RKAQLALQKGEEDLAREALKRRKSYADNANALKAQL 183 (335)
Q Consensus 107 ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e---~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~le~ql 183 (335)
.+...-.++.++...+..++..+..++.++.+...-..+++ +.+.....-|+ .|.+. +.+.-...++...
T Consensus 7 ~~q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~------llvk~-~k~~~~~eL~er~ 79 (119)
T COG1382 7 EVQAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGN------LLVKV-SKEEAVDELEERK 79 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhh------HHhhh-hHHHHHHHHHHHH
Confidence 45566677888889999999999999999998766555544 33444444454 44444 6666777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 184 DQQKNVVNNLVSNTRLLESKIQEARSKKDTL 214 (335)
Q Consensus 184 e~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~L 214 (335)
+.++-.+..|+.+-..++.++++++.++..+
T Consensus 80 E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~ 110 (119)
T COG1382 80 ETLELRIKTLEKQEEKLQERLEELQSEIQKA 110 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777777776665543
No 60
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=92.57 E-value=8.2 Score=35.30 Aligned_cols=112 Identities=21% Similarity=0.232 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcH
Q 019853 80 DRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEE 159 (335)
Q Consensus 80 ~Rl~~lira~in~~ldk~EDPe~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~E 159 (335)
+.||++|+.. .....+.+.....+ --..|....-.-+++-|.+..+++.+...+..+..+......+-....
T Consensus 72 k~fWRViKt~------d~~~AE~~Y~~F~~-Qt~~LA~~eirR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~- 143 (192)
T PF11180_consen 72 KAFWRVIKTQ------DEARAEAIYRDFAQ-QTARLADVEIRRAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQ- 143 (192)
T ss_pred CceeEeeecC------ChhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 4567777543 11112333333322 223444455555555566666666666666666655554444332211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 160 DLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESK 203 (335)
Q Consensus 160 dLAreAL~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~k 203 (335)
.+..+......++..|+.+......++.+|..+++.|+.+
T Consensus 144 ----~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q 183 (192)
T PF11180_consen 144 ----QVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQ 183 (192)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2334444445555555555555555555555555555443
No 61
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=92.55 E-value=4.6 Score=42.23 Aligned_cols=48 Identities=19% Similarity=0.155 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 101 EKILEQAVLEMNDDLVKMRQAT-AQVLASQKRLENKCKAAEQASEDWYR 148 (335)
Q Consensus 101 e~~LdQ~Ireme~~L~kar~~l-A~v~A~~k~le~kl~~~~~~~~~~e~ 148 (335)
..++++...+.++...+++... ..+...+..+++++++.+.++.++++
T Consensus 35 e~i~keA~~eAke~~ke~~~EaeeE~~~~R~Ele~el~~~e~rL~qrE~ 83 (514)
T TIGR03319 35 KRIIEEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNELQRLER 83 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555554444443 22223333333333333444444433
No 62
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=92.44 E-value=16 Score=38.48 Aligned_cols=14 Identities=36% Similarity=0.610 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHcCC
Q 019853 280 VDDDLANLKKELSG 293 (335)
Q Consensus 280 vddeLa~LKa~l~~ 293 (335)
+.+++..|+.++..
T Consensus 453 ~~~~i~~l~~~L~~ 466 (569)
T PRK04778 453 VSDEIEALAEELEE 466 (569)
T ss_pred HHHHHHHHHHHhcc
Confidence 56666666666644
No 63
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=92.17 E-value=11 Score=35.70 Aligned_cols=46 Identities=15% Similarity=0.299 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Q 019853 104 LEQAVLEMNDDLVKMRQATAQVLA-----SQKRLENKCKAAEQASEDWYRK 149 (335)
Q Consensus 104 LdQ~Ireme~~L~kar~~lA~v~A-----~~k~le~kl~~~~~~~~~~e~r 149 (335)
|...|..+...|..+-..+..+-. ....+.+.+++++........+
T Consensus 92 L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~l~ea~~mL~emr~r 142 (264)
T PF06008_consen 92 LEQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQRALAEAQRMLEEMRKR 142 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 444444444444444444333322 3344444555555555444444
No 64
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=92.07 E-value=7.5 Score=33.75 Aligned_cols=18 Identities=28% Similarity=0.289 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019853 130 KRLENKCKAAEQASEDWY 147 (335)
Q Consensus 130 k~le~kl~~~~~~~~~~e 147 (335)
+.++.+..+.+.+|..+.
T Consensus 24 K~le~~~~~~E~EI~sL~ 41 (143)
T PF12718_consen 24 KQLEQENEQKEQEITSLQ 41 (143)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 65
>PRK12704 phosphodiesterase; Provisional
Probab=92.00 E-value=7.6 Score=40.70 Aligned_cols=48 Identities=13% Similarity=0.147 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 101 EKILEQAVLEMNDDLVKMRQAT-AQVLASQKRLENKCKAAEQASEDWYR 148 (335)
Q Consensus 101 e~~LdQ~Ireme~~L~kar~~l-A~v~A~~k~le~kl~~~~~~~~~~e~ 148 (335)
..+++++..+.++...+++... ..+...+..+++.+.+.+.++.+.++
T Consensus 41 e~I~keA~~eAke~~ke~~leaeeE~~~~R~Ele~e~~~~e~~L~qrE~ 89 (520)
T PRK12704 41 KRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEK 89 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666655555444443 33333333344444333444444433
No 66
>PRK10884 SH3 domain-containing protein; Provisional
Probab=91.97 E-value=5.7 Score=36.68 Aligned_cols=56 Identities=14% Similarity=0.220 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 019853 179 LKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNV 234 (335)
Q Consensus 179 le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~~~AkAq~~v~~~~~~~ 234 (335)
+++.+++..+.+.+|+.+..+|+.+++.++.+.+.+.+.....+-...++..+.|.
T Consensus 123 l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~~wf~~Gg 178 (206)
T PRK10884 123 MQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIMQWFMYGG 178 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHch
Confidence 33344444444555666666666666777777777766666666666677777653
No 67
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=91.78 E-value=19 Score=37.92 Aligned_cols=97 Identities=16% Similarity=0.270 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 114 DLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA--LQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVN 191 (335)
Q Consensus 114 ~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~A--L~~G~EdLAreAL~rk~~~e~q~~~le~qle~~~~~v~ 191 (335)
.|..++..|..+-.....++.++..+..+++++..+-..+ ...|...-.+..+.+...++..+..++..+..++..+.
T Consensus 93 El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~ 172 (546)
T KOG0977|consen 93 ELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELK 172 (546)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 4455555555555556666666666666666665555555 33444444444555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 019853 192 NLVSNTRLLESKIQEARSK 210 (335)
Q Consensus 192 ~Lk~~l~~Le~ki~e~k~k 210 (335)
.|+.+...|...|..++..
T Consensus 173 ~Lk~en~rl~~~l~~~r~~ 191 (546)
T KOG0977|consen 173 RLKAENSRLREELARARKQ 191 (546)
T ss_pred HHHHHhhhhHHHHHHHHHH
Confidence 5555555555555544443
No 68
>PHA02562 46 endonuclease subunit; Provisional
Probab=91.68 E-value=18 Score=37.38 Aligned_cols=22 Identities=9% Similarity=0.241 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019853 191 NNLVSNTRLLESKIQEARSKKD 212 (335)
Q Consensus 191 ~~Lk~~l~~Le~ki~e~k~kr~ 212 (335)
..|.+++..++.++..+...+.
T Consensus 302 ~~l~d~i~~l~~~l~~l~~~i~ 323 (562)
T PHA02562 302 TKIKDKLKELQHSLEKLDTAID 323 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444443
No 69
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=91.49 E-value=24 Score=38.46 Aligned_cols=118 Identities=18% Similarity=0.179 Sum_probs=60.4
Q ss_pred hhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Q 019853 94 LSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYA 173 (335)
Q Consensus 94 ldk~EDPe~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e 173 (335)
|-.+|.--..|-..+++.+.+|..++.++......-.+|..++..+...-...+.....--.+++. .. .....|+
T Consensus 274 L~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~l~~~ke~~~~~d~~~~~~--s~---~d~~~ye 348 (717)
T PF09730_consen 274 LLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRKLQEDKEQQSAEDSEKERD--SH---EDGDYYE 348 (717)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhcccccc--cc---cccchhh
Confidence 344554456666677777777777777777666666666666665555222222221111111110 00 0011222
Q ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 174 DN---ANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKA 216 (335)
Q Consensus 174 ~q---~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkA 216 (335)
-. ...|+..|..+...+..|+..|..|+.++..++.+...-+.
T Consensus 349 ~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~ 394 (717)
T PF09730_consen 349 VDINGLEILECKYKVAVSEVIQLKAELKALKSKYNELEERYKQEKD 394 (717)
T ss_pred hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 23455666666666666666666666666666554444333
No 70
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=91.48 E-value=11 Score=38.56 Aligned_cols=44 Identities=20% Similarity=0.261 Sum_probs=22.9
Q ss_pred CCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 98 EDPEKILEQAVLEMND-DLVKMRQATAQVLASQKRLENKCKAAEQ 141 (335)
Q Consensus 98 EDPe~~LdQ~Ireme~-~L~kar~~lA~v~A~~k~le~kl~~~~~ 141 (335)
++-.+..+|.+-+|++ +|...++.....+...+.++......+.
T Consensus 331 eSqr~y~e~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~ 375 (493)
T KOG0804|consen 331 ESQRKYYEQIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEA 375 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 3445666666666666 5555555554444444444444443333
No 71
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=91.22 E-value=2.4 Score=44.04 Aligned_cols=100 Identities=13% Similarity=0.168 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 107 AVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQ 186 (335)
Q Consensus 107 ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~le~qle~~ 186 (335)
.|++++++|.+++..++.+.+....++.+++-++.....+......++..+..+++ ...+....+..++..+
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~ 143 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLK--------EWFQAFDFNGSEIERL 143 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHH--------HHHHHHHHHHHHHHHH
Confidence 55566666666666666666655555555544433322221111111111222233 2333444445555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 187 KNVVNNLVSNTRLLESKIQEARSKKDTL 214 (335)
Q Consensus 187 ~~~v~~Lk~~l~~Le~ki~e~k~kr~~L 214 (335)
......+...+++++.+|+.+++++..+
T Consensus 144 ~~~~~~~~~~~~~~~~~l~~l~~~l~~l 171 (525)
T TIGR02231 144 LTEDREAERRIRELEKQLSELQNELNAL 171 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5555555555555555555555554433
No 72
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=91.15 E-value=26 Score=38.16 Aligned_cols=38 Identities=11% Similarity=0.333 Sum_probs=23.1
Q ss_pred hhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 94 LSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKR 131 (335)
Q Consensus 94 ldk~EDPe~~LdQ~Ireme~~L~kar~~lA~v~A~~k~ 131 (335)
+......++.+...|..++.+..+++.-+..+...+.+
T Consensus 448 is~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~ 485 (697)
T PF09726_consen 448 ISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQ 485 (697)
T ss_pred HhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345556666777777777766666666655555443
No 73
>PRK03918 chromosome segregation protein; Provisional
Probab=91.03 E-value=28 Score=38.23 Aligned_cols=18 Identities=22% Similarity=0.272 Sum_probs=10.3
Q ss_pred chHHHHHHHHHHHHHHHh
Q 019853 77 NLFDRLARVVKSYANAIL 94 (335)
Q Consensus 77 sif~Rl~~lira~in~~l 94 (335)
++|....-+-.|.+..++
T Consensus 124 ~~f~~~~~~~Qg~~~~~~ 141 (880)
T PRK03918 124 HVFLNAIYIRQGEIDAIL 141 (880)
T ss_pred HHhceeEEEeccchHHHh
Confidence 355554445566666665
No 74
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=90.71 E-value=18 Score=35.59 Aligned_cols=15 Identities=20% Similarity=0.051 Sum_probs=7.3
Q ss_pred cCccceeeeeccccc
Q 019853 43 NGGVGALKVTRLRIA 57 (335)
Q Consensus 43 ~~~~~~~~~~~~~~~ 57 (335)
+|-+..+.|..-...
T Consensus 51 ~G~v~~i~V~eG~~V 65 (423)
T TIGR01843 51 GGIVREILVREGDRV 65 (423)
T ss_pred CcEEEEEEeCCCCEe
Confidence 344555555544433
No 75
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=90.70 E-value=20 Score=35.95 Aligned_cols=134 Identities=11% Similarity=0.167 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 116 VKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVS 195 (335)
Q Consensus 116 ~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~le~qle~~~~~v~~Lk~ 195 (335)
...|..+.+.....+.++..+........+........|.+ .-.|-+.+-++++.+-++|........+++.
T Consensus 216 kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lek--------I~sREk~iN~qle~l~~eYr~~~~~ls~~~~ 287 (359)
T PF10498_consen 216 KDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEK--------IESREKYINNQLEPLIQEYRSAQDELSEVQE 287 (359)
T ss_pred chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666666666666666555555544443 2233333444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc----HHHHHHHHHHHHHhHHHHHHH
Q 019853 196 NTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSS----ALSAFEKMEEKVLTMESQADS 259 (335)
Q Consensus 196 ~l~~Le~ki~e~k~kr~~LkAr~~~AkAq~~v~~~~~~~~~~~----a~~~feRmEeki~~~EA~AeA 259 (335)
.+..+..-+.++...+..+.-..... ++.|.+...+++.++ .-.++.+|+..|..|+-+.-.
T Consensus 288 ~y~~~s~~V~~~t~~L~~IseeLe~v--K~emeerg~~mtD~sPlv~IKqAl~kLk~EI~qMdvrIGV 353 (359)
T PF10498_consen 288 KYKQASEGVSERTRELAEISEELEQV--KQEMEERGSSMTDGSPLVKIKQALTKLKQEIKQMDVRIGV 353 (359)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHH--HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhe
Confidence 44444444444444444443333222 333445444554333 356778888888877766543
No 76
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=90.55 E-value=16 Score=34.58 Aligned_cols=54 Identities=26% Similarity=0.356 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019853 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQ 155 (335)
Q Consensus 102 ~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~ 155 (335)
.-|..-+..++++..+++..+.........|+.+...++.....++.++..|..
T Consensus 8 ~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee 61 (246)
T PF00769_consen 8 QELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEE 61 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457778889999999999999999999999999999999999998888776643
No 77
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=90.44 E-value=17 Score=34.81 Aligned_cols=105 Identities=18% Similarity=0.274 Sum_probs=53.7
Q ss_pred HHHHHHHHHhhccCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHH
Q 019853 85 VVKSYANAILSSFEDP----EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEED 160 (335)
Q Consensus 85 lira~in~~ldk~EDP----e~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~Ed 160 (335)
.+...++.+-.+.-.+ ..+++..|+++...|..+...-+ +++-+++.+...+.++..+....
T Consensus 29 ~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka-------~l~~e~~~l~~e~~~~r~k~e~e------- 94 (312)
T PF00038_consen 29 RLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKA-------RLELEIDNLKEELEDLRRKYEEE------- 94 (312)
T ss_dssp HHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred hhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhh-------HHhhhhhhHHHHHHHHHHHHHHH-------
Confidence 3455555555553222 34555555555555555555444 44555555555555555444443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 161 LAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEAR 208 (335)
Q Consensus 161 LAreAL~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k 208 (335)
......++..+..+...++........|...+..|+..|.-++
T Consensus 95 -----~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~ 137 (312)
T PF00038_consen 95 -----LAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLK 137 (312)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666666666666655555554443
No 78
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=90.37 E-value=32 Score=37.91 Aligned_cols=122 Identities=17% Similarity=0.243 Sum_probs=68.6
Q ss_pred HHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 019853 91 NAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRK 170 (335)
Q Consensus 91 n~~ldk~EDPe~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~ 170 (335)
+.+|+.-+.-+.-|+-.|+++++.|..++..+....+....+...+............+ -|-++-=|.++.
T Consensus 230 q~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k---------~d~~~~eL~rk~ 300 (775)
T PF10174_consen 230 QTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSK---------MDRLKLELSRKK 300 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHH---------HHHHHHHHHHHH
Confidence 33444444445556666666666666666666655666555555555544444333322 222222222222
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 171 ----SYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSA 221 (335)
Q Consensus 171 ----~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~~~A 221 (335)
.+...+..+..+...+..+++.|+.++...+.....+....+.|..+...+
T Consensus 301 ~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k 355 (775)
T PF10174_consen 301 SELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEK 355 (775)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 344455555566666677777777777777777777777777776665554
No 79
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=90.18 E-value=38 Score=38.42 Aligned_cols=105 Identities=13% Similarity=0.226 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 106 QAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQ 185 (335)
Q Consensus 106 Q~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~le~qle~ 185 (335)
-.|.++.+.+..+++.+-.+-......++.+.+.....+.++.+...+-..- =...=.++...++.+..|+.+++.
T Consensus 337 ~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~----~~~~~~~~~e~e~k~~~L~~evek 412 (1074)
T KOG0250|consen 337 EEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQT----NNELGSELEERENKLEQLKKEVEK 412 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhhhhhHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555555555555544432221 122223334445555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 186 QKNVVNNLVSNTRLLESKIQEARSKKDTL 214 (335)
Q Consensus 186 ~~~~v~~Lk~~l~~Le~ki~e~k~kr~~L 214 (335)
++.++..|+..+..+..++...+-++...
T Consensus 413 ~e~~~~~L~~e~~~~~~~~~~~~ee~~~i 441 (1074)
T KOG0250|consen 413 LEEQINSLREELNEVKEKAKEEEEEKEHI 441 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 55555555555555555555555555444
No 80
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=90.09 E-value=24 Score=36.09 Aligned_cols=53 Identities=15% Similarity=0.207 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHH
Q 019853 165 ALKRRKSYADNANALKAQLDQQKNVVNNLVSNTR---------------LLESKIQEARSKKDTLKAR 217 (335)
Q Consensus 165 AL~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~---------------~Le~ki~e~k~kr~~LkAr 217 (335)
...+...+..++...+.++...+.....++..+. .+..+|.+++.++..+..+
T Consensus 202 ~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~l~~~ 269 (498)
T TIGR03007 202 YYSEISEAQEELEAARLELNEAIAQRDALKRQLGGEEPVLLAGSSVANSELDGRIEALEKQLDALRLR 269 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCcccccCCCchHHHHHHHHHHHHHHHHH
Confidence 4456666777777777777777766666665433 4555666666666665543
No 81
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=90.05 E-value=8.3 Score=42.04 Aligned_cols=75 Identities=13% Similarity=0.256 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHH-HHH---HhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 78 LFDRLARVVKSY-ANA---ILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL 152 (335)
Q Consensus 78 if~Rl~~lira~-in~---~ldk~EDPe~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~ 152 (335)
+|.+-..+++-. +.. +-+.++--...|...+..--+.|.+++.....+-...+.|..+|+++...-+.+.+|+..
T Consensus 540 lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~ 618 (717)
T PF10168_consen 540 LLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDR 618 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666543 221 112222233445544444445555555555555555555666666666665555555554
No 82
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=89.72 E-value=13 Score=38.11 Aligned_cols=48 Identities=13% Similarity=0.124 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQ 151 (335)
Q Consensus 104 LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~ 151 (335)
.++++.+.-......++..-.+.+.++-+++++.+.+..+.+|..+-.
T Consensus 352 ~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~ 399 (493)
T KOG0804|consen 352 QKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELK 399 (493)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777888888899999999999999999999988754
No 83
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=89.33 E-value=18 Score=39.15 Aligned_cols=113 Identities=13% Similarity=0.126 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Q 019853 106 QAVLEMNDDLVKMRQATAQVLASQ-------KRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANA 178 (335)
Q Consensus 106 Q~Ireme~~L~kar~~lA~v~A~~-------k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~ 178 (335)
..|.+++.++.+++..++.+.... ..++.++++++.++..--.+....+. .-...+..+...++.++..
T Consensus 288 ~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~~e~~~~~~~~~----~~~~~a~~~~~~L~~~l~~ 363 (754)
T TIGR01005 288 DLIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQIRSELQKITKSLL----MQADAAQARESQLVSDVNQ 363 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 678888888888888777766643 34445555555544433333222221 1112233333344444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 179 LKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATK 226 (335)
Q Consensus 179 le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~~~AkAq~~ 226 (335)
++.++.+.- .....+..|+...+-.+.-.+.+..|.+.++.+..
T Consensus 364 ~~~~~~~~~----~~~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~~~~~ 407 (754)
T TIGR01005 364 LKAASAQAG----EQQVDLDALQRDAAAKRQLYESYLTNYRQAASRQN 407 (754)
T ss_pred HHHHHHhCc----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 443333222 22445566666667777777777777766665543
No 84
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=89.32 E-value=23 Score=34.80 Aligned_cols=9 Identities=11% Similarity=0.202 Sum_probs=4.8
Q ss_pred HHHHHHHHH
Q 019853 281 DDDLANLKK 289 (335)
Q Consensus 281 ddeLa~LKa 289 (335)
+..+..+|.
T Consensus 318 ~~~~~~i~~ 326 (423)
T TIGR01843 318 PKDIGFVHV 326 (423)
T ss_pred hhhhhhhCC
Confidence 455555554
No 85
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=89.03 E-value=21 Score=33.83 Aligned_cols=114 Identities=17% Similarity=0.198 Sum_probs=59.4
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcCcHHHHHHH
Q 019853 89 YANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL---ALQKGEEDLAREA 165 (335)
Q Consensus 89 ~in~~ldk~EDPe~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~---AL~~G~EdLAreA 165 (335)
.+..-+++++--..-..-++..++..+..++..+...--....++.++.+.+..+.+...+... .+...-+
T Consensus 14 ~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~------ 87 (239)
T COG1579 14 KLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKD------ 87 (239)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc------
Confidence 4444444444323344555566677777777777766666666777777766666665555433 2322222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 166 LKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (335)
Q Consensus 166 L~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~Lk 215 (335)
+.++..|...++.++.....|...+..+..++..++.++..++
T Consensus 88 -------~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~ 130 (239)
T COG1579 88 -------ERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLK 130 (239)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444443
No 86
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=88.92 E-value=28 Score=36.73 Aligned_cols=17 Identities=35% Similarity=0.595 Sum_probs=12.3
Q ss_pred CHHHHHHHHHHHcCCCC
Q 019853 279 SVDDDLANLKKELSGSS 295 (335)
Q Consensus 279 ~vddeLa~LKa~l~~~~ 295 (335)
..|.|++..++=|.+..
T Consensus 374 ~Ld~EI~~YRkLLegee 390 (546)
T KOG0977|consen 374 SLDAEIAAYRKLLEGEE 390 (546)
T ss_pred HHHhHHHHHHHHhcccc
Confidence 57888888888776643
No 87
>PF13166 AAA_13: AAA domain
Probab=88.85 E-value=29 Score=37.09 Aligned_cols=63 Identities=13% Similarity=0.292 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCC
Q 019853 172 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQ-SAKTATKVSEMLGNV 234 (335)
Q Consensus 172 ~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~~-~AkAq~~v~~~~~~~ 234 (335)
+...+..+...+......+..+...+..++..+...+.+...|.+... ...+...+|..+..+
T Consensus 408 ~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~iN~~L~~~ 471 (712)
T PF13166_consen 408 LKEDIEEYQKEIKELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQLKNTEPAADRINEELKRL 471 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 334444555555555556666666666666666666666666665544 455566666655544
No 88
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=88.79 E-value=36 Score=38.35 Aligned_cols=143 Identities=17% Similarity=0.271 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 019853 109 LEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAR--EALKRRKSYADNANALKAQLDQQ 186 (335)
Q Consensus 109 reme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAr--eAL~rk~~~e~q~~~le~qle~~ 186 (335)
.+++.....+.+.+..-...-.+|++.++.+...++.+.++-.. ++.-++=. .=......+......+....+.+
T Consensus 184 ~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~---~~~Ie~l~~k~~~v~y~~~~~ey~~~k~~~~r~ 260 (1072)
T KOG0979|consen 184 MDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERK---KSKIELLEKKKKWVEYKKHDREYNAYKQAKDRA 260 (1072)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhccccchHhhhHHHHHHHHHHHHH
Confidence 34444444444555554445555555555555555555443221 12222221 11233455677778888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhHHHHHH
Q 019853 187 KNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMESQAD 258 (335)
Q Consensus 187 ~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~~~AkAq~~v~~~~~~~~~~~a~~~feRmEeki~~~EA~Ae 258 (335)
+..+..+...+..++.++.+++.++..+-.+..... ..+++..... -..++-|+++++++.......+
T Consensus 261 k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~--~~~~e~~~k~--~~~~ek~~~~~~~v~~~~~~le 328 (1072)
T KOG0979|consen 261 KKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQ--RELNEALAKV--QEKFEKLKEIEDEVEEKKNKLE 328 (1072)
T ss_pred HHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHH--HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888887777666554432 2233322221 1234455555555554444443
No 89
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=88.67 E-value=10 Score=29.83 Aligned_cols=61 Identities=15% Similarity=0.262 Sum_probs=54.2
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019853 96 SFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQK 156 (335)
Q Consensus 96 k~EDPe~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~ 156 (335)
.+.|.+.+|...|.++++.=..+.+.+..+...+..|.++..+++.+...|+++...-|.+
T Consensus 15 qAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGk 75 (79)
T PRK15422 15 QAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGR 75 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3347789999999999999999999999999999999999999999999999998876543
No 90
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=88.49 E-value=36 Score=35.92 Aligned_cols=154 Identities=15% Similarity=0.249 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHH
Q 019853 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAE----------------------------QASEDWYRKAQLA 153 (335)
Q Consensus 102 ~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~----------------------------~~~~~~e~rA~~A 153 (335)
.-+++.|.++++++..+...+..+......-...+.++. ..++.........
T Consensus 104 ~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f~~l 183 (560)
T PF06160_consen 104 KEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEFSEFEEL 183 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555554444333333322 3334444455566
Q ss_pred HhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 019853 154 LQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVN----NLVSNTRLLESKIQEARSKK---DTLKARAQSAKTATK 226 (335)
Q Consensus 154 L~~G~EdLAreAL~rk~~~e~q~~~le~qle~~~~~v~----~Lk~~l~~Le~ki~e~k~kr---~~LkAr~~~AkAq~~ 226 (335)
...||-.-|++.|......- ..++..++..=.-+. .+-.++.+|+.-+.+|..+- ..+.--........+
T Consensus 184 t~~GD~~~A~eil~~l~~~~---~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~~gy~l~~~~i~~~i~~i~~~ 260 (560)
T PF06160_consen 184 TENGDYLEAREILEKLKEET---DELEEIMEDIPKLYKELQKEFPDQLEELKEGYREMEEEGYYLEHLDIEEEIEQIEEQ 260 (560)
T ss_pred HHCCCHHHHHHHHHHHHHHH---HHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
Confidence 67788888887776554433 333333333222222 33344555555555554431 111112223333333
Q ss_pred HHH---HhcCCCCCcHHHHHHHHHHHHHhHHHHHH
Q 019853 227 VSE---MLGNVNTSSALSAFEKMEEKVLTMESQAD 258 (335)
Q Consensus 227 v~~---~~~~~~~~~a~~~feRmEeki~~~EA~Ae 258 (335)
+.. .+..++.+.+...++.+.++|+.+....+
T Consensus 261 l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~le 295 (560)
T PF06160_consen 261 LEEALALLKNLELDEVEEENEEIEERIDQLYDILE 295 (560)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 33455567788888888888877665443
No 91
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=88.19 E-value=58 Score=37.93 Aligned_cols=45 Identities=18% Similarity=0.319 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 173 ADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 217 (335)
Q Consensus 173 e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr 217 (335)
+..+..+...++.+...+..+...+..++.+|......+..+.-.
T Consensus 976 e~el~~~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dn 1020 (1311)
T TIGR00606 976 ETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDN 1020 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444444444444444433
No 92
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=88.15 E-value=4.1 Score=35.15 Aligned_cols=147 Identities=18% Similarity=0.255 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhHHHHH
Q 019853 178 ALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMESQA 257 (335)
Q Consensus 178 ~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~~~AkAq~~v~~~~~~~~~~~a~~~feRmEeki~~~EA~A 257 (335)
.++.....+...+..|...+..+..++..+..+-+.-.|+... +-.......+.. .......++.+.-+++......
T Consensus 5 ~Lk~~~~~L~~~~~~le~~i~~~~~~~k~~~~~~~~~~A~~~l-k~~k~~~k~~~~--~~~~~~~l~~~~~~ie~a~~~~ 81 (171)
T PF03357_consen 5 KLKKTIRRLEKQIKRLEKKIKKLEKKAKKAIKKGNKERAKIYL-KRKKRLEKQLEK--LLNQLSNLESVLLQIETAQSNQ 81 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCTT-HHHHHHHH-HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHH-HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555555544333322222111 111111111111 1233456666666666666666
Q ss_pred HHhhcccC-C-ChhHHHhhhccCCHHHHHHHHHHHcCCCCCCCCCCCCCCcCCCCCCCCCCChhhHHHHHHHHHHhh
Q 019853 258 DSLNQLTT-D-DLEGKFALLETSSVDDDLANLKKELSGSSKKGELPPGRAAASSTNTAFPFRDAEIEKELNELRQRA 332 (335)
Q Consensus 258 eA~~eL~~-~-~Le~k~a~le~~~vddeLa~LKa~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (335)
..+..|.. . -|..-...+.-+.|++-+..+...+....--++.-.+. .+....++|.||+.||++|-...
T Consensus 82 ~v~~al~~~~~~Lk~~~~~i~~~~v~~~~d~~~e~~e~~~ei~~~l~~~-----~~~~~~~dd~ele~eL~~l~~e~ 153 (171)
T PF03357_consen 82 QVVKALKQSSKALKKINKQINLDKVEKLMDDFQEEMEDQDEISEALSDS-----MDQVDDVDDEELEEELEQLEDEI 153 (171)
T ss_dssp HHSSS----SHHHHHHHHSTTSCCHHHHHHHHHHHHHHHTS---------------------TTSTTCHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHcc-----ccCCCCCCHHHHHHHHHHHHHHH
Confidence 65555531 1 22222223333567777777776654432211111110 11115688999999999987654
No 93
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=88.08 E-value=53 Score=37.32 Aligned_cols=271 Identities=17% Similarity=0.254 Sum_probs=127.9
Q ss_pred ccCc--cceeeeeccccccCCCCcccccCCCcccccCchHHHHHHHHHHHHHHHhhc-------------cCCHHHHHHH
Q 019853 42 FNGG--VGALKVTRLRIAPSSRSHCYRQGGGALNTRMNLFDRLARVVKSYANAILSS-------------FEDPEKILEQ 106 (335)
Q Consensus 42 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Msif~Rl~~lira~in~~ldk-------------~EDPe~~LdQ 106 (335)
|||+ ..++.+-|+-+-.+. --.||.-|.. +=..-.+-++..=+.++.. ++.-..-|++
T Consensus 618 y~~~~r~k~valdGtl~~ksG-----lmsGG~s~~~--wdek~~~~L~~~k~rl~eel~ei~~~~~e~~~v~~~i~~le~ 690 (1141)
T KOG0018|consen 618 YGGEIRFKVVALDGTLIHKSG-----LMSGGSSGAK--WDEKEVDQLKEKKERLLEELKEIQKRRKEVSSVESKIHGLEM 690 (1141)
T ss_pred hcccccceEEEeeeeEEeccc-----eecCCccCCC--cCHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4455 567777777766665 2456665643 3233444444443333332 2333455666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHhc---------
Q 019853 107 AVLEMNDDLVKMRQATAQVLASQKRLENK---------------------CKAAEQASEDWYRKAQLALQK--------- 156 (335)
Q Consensus 107 ~Ireme~~L~kar~~lA~v~A~~k~le~k---------------------l~~~~~~~~~~e~rA~~AL~~--------- 156 (335)
-|.-+..++...+.++.+..-+....+.. +++++.++.+.+++.-.-.-.
T Consensus 691 ~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~~igv~ir~Y 770 (1141)
T KOG0018|consen 691 RLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEISEIKRKLQNREGEMKELEERMNKVEDRIFKGFCRRIGVRIREY 770 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCeeeehH
Confidence 66666666666666655544333333322 223333333333333221110
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 019853 157 GEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNT 236 (335)
Q Consensus 157 G~EdLAreAL~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~~~AkAq~~v~~~~~~~~~ 236 (335)
-+..+.++-..+..+++++...++.+++=.++ ......++.++..++......+-++-+..++..- +++. ..+..
T Consensus 771 ee~~~~~~~a~k~~ef~~q~~~l~~~l~fe~~--~d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~--i~e~-~~~e~ 845 (1141)
T KOG0018|consen 771 EERELQQEFAKKRLEFENQKAKLENQLDFEKQ--KDTQRRVERWERSVEDLEKEIEGLKKDEEAAEKI--IAEI-EELEK 845 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhheec--ccHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHH--HhhH-HHHHH
Confidence 12345777778888888888888888874333 4444455555555555555555444433322111 1100 00000
Q ss_pred CcHHHHHHHHHHHHHhHHHHHHHhhcccCCChhHHHhhhcc--CCHHHHHHHHHHHcCC---CCC--CCCCCCCCCcCCC
Q 019853 237 SSALSAFEKMEEKVLTMESQADSLNQLTTDDLEGKFALLET--SSVDDDLANLKKELSG---SSK--KGELPPGRAAASS 309 (335)
Q Consensus 237 ~~a~~~feRmEeki~~~EA~AeA~~eL~~~~Le~k~a~le~--~~vddeLa~LKa~l~~---~~~--~~~~~~~~~~~~~ 309 (335)
-+ ...|+.++..+....-.+. .+-..|-.|++ ..++..++++.-+... .-+ .=.+|--+...++
T Consensus 846 k~-k~~~~~~~~e~~e~~k~~~--------~~~~~~tkl~~~i~~~es~ie~~~~er~~lL~~ckl~~I~vPl~~gs~~d 916 (1141)
T KOG0018|consen 846 KN-KSKFEKKEDEINEVKKILR--------RLVKELTKLDKEITSIESKIERKESERHNLLSKCKLEDIEVPLSSGSMDD 916 (1141)
T ss_pred HH-HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhhccccccccCCCccc
Confidence 00 3344444444433332222 22223333332 2344444444433211 001 1222333222345
Q ss_pred CCCCCCCChhhHHHHHHHHHHhhhc
Q 019853 310 TNTAFPFRDAEIEKELNELRQRAKD 334 (335)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (335)
....+.|+-++|+.++. |++++.+
T Consensus 917 ~~~~ieidy~~L~~~y~-L~~kl~e 940 (1141)
T KOG0018|consen 917 IVIGIEIDYSGLPREYK-LQQKLEE 940 (1141)
T ss_pred cceecccccccccHHHH-HHHHHHH
Confidence 55677888888888877 7777754
No 94
>PF13514 AAA_27: AAA domain
Probab=87.97 E-value=55 Score=37.39 Aligned_cols=42 Identities=21% Similarity=0.276 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019853 114 DLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQ 155 (335)
Q Consensus 114 ~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~ 155 (335)
....+...+..+.......+.++..++.....|...=..++.
T Consensus 674 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~ 715 (1111)
T PF13514_consen 674 RREQLEEELQQLEQELEEAEAELQEAQEALEEWQEEWQEALA 715 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555566666666777777778888888877665553
No 95
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=87.93 E-value=12 Score=40.69 Aligned_cols=45 Identities=18% Similarity=0.347 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 164 EALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEAR 208 (335)
Q Consensus 164 eAL~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k 208 (335)
.||+++..+..++..+++++++....-++|...+..|...+.+++
T Consensus 213 aAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 213 AALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 466666666666666666666666666666666666665555555
No 96
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.77 E-value=42 Score=37.02 Aligned_cols=31 Identities=13% Similarity=0.220 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 186 QKNVVNNLVSNTRLLESKIQEARSKKDTLKA 216 (335)
Q Consensus 186 ~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkA 216 (335)
.+..+-.++.....|+-.++.+.-++..|--
T Consensus 428 eqe~iv~~nak~~ql~~eletLn~k~qqls~ 458 (1118)
T KOG1029|consen 428 EQEWIVYLNAKKKQLQQELETLNFKLQQLSG 458 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333444444444444444444444444433
No 97
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=87.72 E-value=7.8 Score=40.02 Aligned_cols=52 Identities=12% Similarity=0.233 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 019853 107 AVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGE 158 (335)
Q Consensus 107 ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~ 158 (335)
.||.+--++.++|..+..++.+-+.+..+-+++++.-.....+...||...+
T Consensus 60 TlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~ 111 (472)
T TIGR03752 60 TLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSET 111 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh
Confidence 4557777777888888888888888888888888888888899988887754
No 98
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=87.42 E-value=19 Score=33.82 Aligned_cols=38 Identities=16% Similarity=0.168 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 172 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARS 209 (335)
Q Consensus 172 ~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~ 209 (335)
+..+++.++...++++..+...+..+..|+.+|+++..
T Consensus 61 l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~ 98 (251)
T PF11932_consen 61 LEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEE 98 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444444444444444444443333
No 99
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=87.22 E-value=54 Score=36.51 Aligned_cols=10 Identities=30% Similarity=0.162 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 019853 281 DDDLANLKKE 290 (335)
Q Consensus 281 ddeLa~LKa~ 290 (335)
|.+++.++.+
T Consensus 539 D~~~~~~~~~ 548 (980)
T KOG0980|consen 539 DRLAAELVAR 548 (980)
T ss_pred HHHHHHHHHH
Confidence 3344444443
No 100
>PRK03918 chromosome segregation protein; Provisional
Probab=86.96 E-value=52 Score=36.07 Aligned_cols=29 Identities=14% Similarity=0.255 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 173 ADNANALKAQLDQQKNVVNNLVSNTRLLE 201 (335)
Q Consensus 173 e~q~~~le~qle~~~~~v~~Lk~~l~~Le 201 (335)
+..+..+...+......+..++..+..++
T Consensus 672 ~~~l~~l~~~~~~l~~~i~~l~~~i~~~~ 700 (880)
T PRK03918 672 SRELAGLRAELEELEKRREEIKKTLEKLK 700 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444433333
No 101
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=86.87 E-value=34 Score=34.40 Aligned_cols=27 Identities=15% Similarity=0.271 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 197 TRLLESKIQEARSKKDTLKARAQSAKT 223 (335)
Q Consensus 197 l~~Le~ki~e~k~kr~~LkAr~~~AkA 223 (335)
+..|+..++-.+...+.|..|...++.
T Consensus 344 ~~~L~r~~~~~~~~y~~ll~r~~e~~l 370 (444)
T TIGR03017 344 MSVLQRDVENAQRAYDAAMQRYTQTRI 370 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555544433
No 102
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=86.27 E-value=27 Score=32.02 Aligned_cols=127 Identities=22% Similarity=0.282 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 019853 79 FDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGE 158 (335)
Q Consensus 79 f~Rl~~lira~in~~ldk~EDPe~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~ 158 (335)
-.+.+.=++.+-|++...-=+=++-|...|.+|+......++.+..+...-+++..-+..++.++..+..+...-- +
T Consensus 7 He~af~~iK~YYndIT~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~-k-- 83 (201)
T PF13851_consen 7 HEKAFQEIKNYYNDITLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYE-K-- 83 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-H--
Confidence 3455556667777776665566888999999999999999999999999999999999999999999887765421 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 159 EDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSA 221 (335)
Q Consensus 159 EdLAreAL~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~~~A 221 (335)
-...+..++..+...+..+..|+-....|+.++..+...++.|..+-..+
T Consensus 84 -------------dK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~ 133 (201)
T PF13851_consen 84 -------------DKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESA 133 (201)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12233344455555555666666666666666666666666666665543
No 103
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=86.15 E-value=31 Score=32.68 Aligned_cols=106 Identities=12% Similarity=0.112 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQL 183 (335)
Q Consensus 104 LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~le~ql 183 (335)
+.-.+..+.+.+......+..+-.+..+++..+....+++.+.+.+- .++..-++--| .-.+...+..+...++.++
T Consensus 36 ~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl-~~v~~~~e~~a--L~~E~~~ak~r~~~le~el 112 (239)
T COG1579 36 AKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL-SAVKDERELRA--LNIEIQIAKERINSLEDEL 112 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 33344455555555555555555555555555555555555555554 44444444211 2223333344444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 184 DQQKNVVNNLVSNTRLLESKIQEARSKKD 212 (335)
Q Consensus 184 e~~~~~v~~Lk~~l~~Le~ki~e~k~kr~ 212 (335)
..+...+..+...+..+..++..++....
T Consensus 113 ~~l~~~~~~l~~~i~~l~~~~~~~e~~~~ 141 (239)
T COG1579 113 AELMEEIEKLEKEIEDLKERLERLEKNLA 141 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444433333
No 104
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=85.99 E-value=20 Score=30.35 Aligned_cols=43 Identities=14% Similarity=0.291 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDW 146 (335)
Q Consensus 104 LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~ 146 (335)
|...||..+-++..++..++++.+.+..+...+-.+-...+.+
T Consensus 21 L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~ 63 (120)
T PF12325_consen 21 LQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL 63 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345667777777888888877777777777776666555554
No 105
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=85.82 E-value=43 Score=34.01 Aligned_cols=51 Identities=22% Similarity=0.265 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 169 RKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQ 219 (335)
Q Consensus 169 k~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~~ 219 (335)
...++.+...+..+-.++...+.+|+.....|..+-+....+-..|..|.+
T Consensus 160 r~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~~ieQ~~~~la~r~~ 210 (499)
T COG4372 160 RRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATRAN 210 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444555555555554444444444444433333
No 106
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=85.68 E-value=46 Score=34.18 Aligned_cols=96 Identities=15% Similarity=0.175 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----cHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 122 TAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKG----EED---LAREALKRRKSYADNANALKAQLDQQKNVVNNLV 194 (335)
Q Consensus 122 lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G----~Ed---LAreAL~rk~~~e~q~~~le~qle~~~~~v~~Lk 194 (335)
..+.+.+--+|..+|..++++..+-+-+|..+|.-- +|- ++|++-..+..++-.+..++.........+..|+
T Consensus 245 ~SrlkqEnlqLvhR~h~LEEq~reqElraeE~l~Ee~rrhrEil~k~eReasle~Enlqmr~qqleeentelRs~~arlk 324 (502)
T KOG0982|consen 245 SSRLKQENLQLVHRYHMLEEQRREQELRAEESLSEEERRHREILIKKEREASLEKENLQMRDQQLEEENTELRSLIARLK 324 (502)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666777777777777777777777776532 222 3455555555555555555555555555555565
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019853 195 SNTRLLESKIQEARSKKDTLKAR 217 (335)
Q Consensus 195 ~~l~~Le~ki~e~k~kr~~LkAr 217 (335)
....+|....+.+...++.+.-|
T Consensus 325 sl~dklaee~qr~sd~LE~lrlq 347 (502)
T KOG0982|consen 325 SLADKLAEEDQRSSDLLEALRLQ 347 (502)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHH
Confidence 55555555555455555544433
No 107
>PRK10869 recombination and repair protein; Provisional
Probab=85.58 E-value=52 Score=34.72 Aligned_cols=80 Identities=15% Similarity=0.024 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQL 183 (335)
Q Consensus 104 LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~le~ql 183 (335)
+-+.+++.=..+.++++.+..+...+....++++-++-++++++.- .++.|+++-=..-..+....+.-.+.+...+
T Consensus 155 ~~~~~~~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~~~---~l~~gE~eeL~~e~~~L~n~e~i~~~~~~~~ 231 (553)
T PRK10869 155 LLQEMRAAYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKELNEF---APQPGEFEQIDEEYKRLANSGQLLTTSQNAL 231 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhC---CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666677777777777777777777777777766643 3567776544444455555555555555554
Q ss_pred HHH
Q 019853 184 DQQ 186 (335)
Q Consensus 184 e~~ 186 (335)
+.+
T Consensus 232 ~~L 234 (553)
T PRK10869 232 QLL 234 (553)
T ss_pred HHh
Confidence 444
No 108
>PRK09343 prefoldin subunit beta; Provisional
Probab=85.45 E-value=21 Score=30.04 Aligned_cols=105 Identities=14% Similarity=0.200 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Q 019853 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYR---KAQLALQKGEEDLAREALKRRKSYADNANALK 180 (335)
Q Consensus 104 LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~---rA~~AL~~G~EdLAreAL~rk~~~e~q~~~le 180 (335)
|-..+...-..+..+++.+..+......++.++.+.+.-..++.. .+..=-.-|. .+.+. ...+-...++
T Consensus 5 ~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~------vlv~q-d~~e~~~~l~ 77 (121)
T PRK09343 5 IPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGN------LLVKV-DKTKVEKELK 77 (121)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhH------HHhhc-cHHHHHHHHH
Confidence 445566667777888888888888888888888876655554443 2222222222 23222 3344444445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 181 AQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (335)
Q Consensus 181 ~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~Lk 215 (335)
..++..+..+..|..+...++.++.+++.+...+.
T Consensus 78 ~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll 112 (121)
T PRK09343 78 ERKELLELRSRTLEKQEKKLREKLKELQAKINEML 112 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555555555443
No 109
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=85.45 E-value=52 Score=34.61 Aligned_cols=76 Identities=16% Similarity=0.147 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQ 182 (335)
Q Consensus 104 LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~le~q 182 (335)
+.+.+++.-..+.++++.+.+....+...+++++.++.++++.+.- .++.|+++-=..-..+....+.-.+.+...
T Consensus 159 ~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~---~l~~~E~e~L~~e~~~L~n~e~i~~~~~~~ 234 (563)
T TIGR00634 159 KVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEEA---DLQPGEDEALEAEQQRLSNLEKLRELSQNA 234 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhC---CcCCCcHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 4445555566666666666666666666666666666666555432 244555543333333333333333333333
No 110
>PF13514 AAA_27: AAA domain
Probab=84.72 E-value=80 Score=36.12 Aligned_cols=93 Identities=15% Similarity=0.217 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 124 QVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAR----EALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRL 199 (335)
Q Consensus 124 ~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAr----eAL~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~ 199 (335)
........++.++..++..+..|+.++..-+..-..++.. ..+......-.........++.+...+..++..+..
T Consensus 740 ~~~~~~~~~~~ri~~~~~~~~~f~~~~~~L~~~l~~~~~~~~~~~~~~~L~~~l~~a~~~~~~~~~l~~~~~~~~~~~~~ 819 (1111)
T PF13514_consen 740 EALAEIRELRRRIEQMEADLAAFEEQVAALAERLGPDLPEDPAEEALEALRARLEEAREAQEERERLQEQLEELEEELEQ 819 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334555666777777888888887776655443321111 344444444444444455555555556666666666
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019853 200 LESKIQEARSKKDTLKA 216 (335)
Q Consensus 200 Le~ki~e~k~kr~~LkA 216 (335)
++.++..++.++..|..
T Consensus 820 ~~~~l~~~~~~l~~L~~ 836 (1111)
T PF13514_consen 820 AEEELEELEAELAELLE 836 (1111)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666666555555543
No 111
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=84.55 E-value=31 Score=33.35 Aligned_cols=118 Identities=22% Similarity=0.289 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Q 019853 159 EDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSS 238 (335)
Q Consensus 159 EdLAreAL~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~~~AkAq~~v~~~~~~~~~~~ 238 (335)
+.|--.||.+++.+|.+++.|+..-.+-.=+++.|+..+.+-+.|.++-+.+...|+-..+. ...
T Consensus 10 eGL~~~aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~---------------l~e 74 (307)
T PF10481_consen 10 EGLPTRALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQS---------------LME 74 (307)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh---------------HHH
Confidence 34566799999999999999999998888888999888888888888877776666532111 123
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhhcccCCChhHHHhhhcc--CCHHHHHHHHHHHcCCCC
Q 019853 239 ALSAFEKMEEKVLTMESQADSLNQLTTDDLEGKFALLET--SSVDDDLANLKKELSGSS 295 (335)
Q Consensus 239 a~~~feRmEeki~~~EA~AeA~~eL~~~~Le~k~a~le~--~~vddeLa~LKa~l~~~~ 295 (335)
.-..+++-++|+..--.--+.. ..-|+.++..... ...+.+|-++|.+|..+.
T Consensus 75 ~c~~lek~rqKlshdlq~Ke~q----v~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ 129 (307)
T PF10481_consen 75 SCENLEKTRQKLSHDLQVKESQ----VNFLEGQLNSCKKQIEKLEQELKRCKSELERSQ 129 (307)
T ss_pred HHHHHHHHHHHhhHHHhhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555554322111110 1234555443321 245677777777775543
No 112
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.20 E-value=17 Score=28.03 Aligned_cols=61 Identities=15% Similarity=0.260 Sum_probs=52.0
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019853 96 SFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQK 156 (335)
Q Consensus 96 k~EDPe~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~ 156 (335)
.+.|.+.+|.-.|.++++.-..+.+.+..+......+++.-+++..+..-|+++.+.-|-+
T Consensus 15 qAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLGk 75 (79)
T COG3074 15 QAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLGK 75 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4447788999999999999888888888888888889999999999999999998876544
No 113
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=84.13 E-value=19 Score=32.46 Aligned_cols=49 Identities=14% Similarity=0.207 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 169 RKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 217 (335)
Q Consensus 169 k~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr 217 (335)
...++..+......++.+......|.-.+..++.++..++.+-..|.-|
T Consensus 132 ~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~R 180 (194)
T PF08614_consen 132 IKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVER 180 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555555555555555555566666666665555554
No 114
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=83.91 E-value=36 Score=34.06 Aligned_cols=39 Identities=15% Similarity=0.084 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 110 EMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYR 148 (335)
Q Consensus 110 eme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~ 148 (335)
+.+..+.+++..++...+....++.++..++..++..+.
T Consensus 88 ~y~~al~qAea~la~a~~~~~~~~a~~~~~~A~i~~a~a 126 (352)
T COG1566 88 DYRAALEQAEAALAAAEAQLRNLRAQLASAQALIAQAEA 126 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555555555555544443
No 115
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=83.82 E-value=66 Score=34.46 Aligned_cols=80 Identities=13% Similarity=0.130 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 131 RLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSK 210 (335)
Q Consensus 131 ~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~k 210 (335)
.+..++..++.+++....+...+- .++-......++..++..+..++..+......+..++..+..++.++..+..+
T Consensus 395 ~~~~~~~~~e~el~~l~~~l~~~~---~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 471 (650)
T TIGR03185 395 QLLKELRELEEELAEVDKKISTIP---SEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEKTKQ 471 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC---ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433221 22334455566666677777777777777777777777766666666555444
Q ss_pred HHH
Q 019853 211 KDT 213 (335)
Q Consensus 211 r~~ 213 (335)
...
T Consensus 472 ~~~ 474 (650)
T TIGR03185 472 KIN 474 (650)
T ss_pred HHh
Confidence 433
No 116
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=83.76 E-value=22 Score=28.83 Aligned_cols=95 Identities=20% Similarity=0.317 Sum_probs=57.5
Q ss_pred hHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019853 78 LFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKG 157 (335)
Q Consensus 78 if~Rl~~lira~in~~ldk~EDPe~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G 157 (335)
.|..+..+|.+.+......+ .+|+..=+.....+.++...++.+-..-..+..++..+
T Consensus 4 ~f~~~~~~v~~el~~t~~d~----~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l------------------ 61 (99)
T PF10046_consen 4 MFSKVSKYVESELEATNEDY----NLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEEL------------------ 61 (99)
T ss_pred HHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------
Confidence 57777888877766655443 34444444444444555554444444444444443332
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 158 EEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQE 206 (335)
Q Consensus 158 ~EdLAreAL~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e 206 (335)
..+-+++..++.++..++..+..|..-...||.|+..
T Consensus 62 ------------~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k~k~ 98 (99)
T PF10046_consen 62 ------------QPYLQQIDQIEEQVTELEQTVYELDEYSKELESKFKK 98 (99)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3345566777777777888888888888888887754
No 117
>PRK11281 hypothetical protein; Provisional
Probab=83.12 E-value=32 Score=39.49 Aligned_cols=31 Identities=13% Similarity=0.178 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKR 131 (335)
Q Consensus 101 e~~LdQ~Ireme~~L~kar~~lA~v~A~~k~ 131 (335)
.+.+-|.+++.-+-+.++.....+.-+.+++
T Consensus 58 ~k~~~~~l~~tL~~L~qi~~~~~~~~~L~k~ 88 (1113)
T PRK11281 58 DKLVQQDLEQTLALLDKIDRQKEETEQLKQQ 88 (1113)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666677777777777777666654444333
No 118
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=82.84 E-value=30 Score=34.42 Aligned_cols=56 Identities=20% Similarity=0.185 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 161 LAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKA 216 (335)
Q Consensus 161 LAreAL~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkA 216 (335)
|-|++.+.......-.+.|+....++..-+++=...+.+|++|++++--+...|..
T Consensus 167 LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsKVqDLm~EirnLLQ 222 (401)
T PF06785_consen 167 LNRELAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLESKVQDLMYEIRNLLQ 222 (401)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555666777777778888888888888889988887776666553
No 119
>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes. LUC7 has been shown to be a U1 snRNA associated protein [] with a role in splice site recognition []. The entry contains human and mouse LUC7 like (LUC7L) proteins [] and human cisplatin resistance-associated overexpressed protein (CROP) [].
Probab=82.66 E-value=15 Score=34.96 Aligned_cols=82 Identities=11% Similarity=0.198 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Q 019853 100 PEKILEQAVLEMNDDLVKMRQATAQVLASQ-----KRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYAD 174 (335)
Q Consensus 100 Pe~~LdQ~Ireme~~L~kar~~lA~v~A~~-----k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~ 174 (335)
-...|..+|+|+...|.+++.-|+...... .....++..+..+|.+.-.+|+.+=..|+-|-|...+.+...+..
T Consensus 84 ~~~~L~~~i~d~drrI~~~k~RL~~~~~~~~~~~~~~~~~~i~~l~~~I~~ll~~aE~LGeeG~VdeA~~~~~~~e~Lk~ 163 (254)
T PF03194_consen 84 FLRYLQRLIRDCDRRIERAKERLEQTQEEQAKEADEEKAEKIDELDEKIGELLKEAEELGEEGDVDEAQKLMEEVEKLKE 163 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 357889999999999999988877633221 112678999999999999999999999999999888665555555
Q ss_pred HHHHHHH
Q 019853 175 NANALKA 181 (335)
Q Consensus 175 q~~~le~ 181 (335)
....++.
T Consensus 164 ek~~le~ 170 (254)
T PF03194_consen 164 EKEELEK 170 (254)
T ss_pred HHHHHHh
Confidence 4444444
No 120
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=82.42 E-value=53 Score=32.30 Aligned_cols=71 Identities=20% Similarity=0.077 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHhhcc----------CCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 81 RLARVVKSYANAILSSF----------EDPE---KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWY 147 (335)
Q Consensus 81 Rl~~lira~in~~ldk~----------EDPe---~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e 147 (335)
.+.+.++.++.--.+.- .||+ .+.+-.+..++.-+...+... ......-++.++.+++.+..+.+
T Consensus 113 ~~~~~~~~~v~v~~~~~s~ii~I~~~~~dP~~A~~ian~l~~~~~~~i~~~~~~~--~~~a~~fl~~ql~~~~~~l~~ae 190 (362)
T TIGR01010 113 AFYRYYKKRLSVDVDSVSGILTLNVTAFDAEEAQKINQRLLKEGERLINRLNERA--RKDTIAFAENEVKEAEQRLNATK 190 (362)
T ss_pred HHHHHHHhceEEeecCCCCeEEEEEEecCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555554444431 3784 666666555555555433222 12233445556666666555555
Q ss_pred HHHHHH
Q 019853 148 RKAQLA 153 (335)
Q Consensus 148 ~rA~~A 153 (335)
.+...-
T Consensus 191 ~~l~~f 196 (362)
T TIGR01010 191 AELLKY 196 (362)
T ss_pred HHHHHH
Confidence 554443
No 121
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=82.24 E-value=69 Score=33.55 Aligned_cols=42 Identities=17% Similarity=0.253 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 180 KAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSA 221 (335)
Q Consensus 180 e~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~~~A 221 (335)
+..+..+...+++.+..+..++.+|..+....+..++-...|
T Consensus 392 ~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKasEa~A 433 (522)
T PF05701_consen 392 KEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKASEALA 433 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444444444433333
No 122
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=82.14 E-value=59 Score=32.67 Aligned_cols=128 Identities=16% Similarity=0.207 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q 019853 79 FDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA----- 153 (335)
Q Consensus 79 f~Rl~~lira~in~~ldk~EDPe~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~A----- 153 (335)
-.-+..++.-..+++-....--...|.+-|.++++...++.-.+..++.+-..+++.+..++..+.+-..-.+.|
T Consensus 224 R~~i~~~l~~~~~dl~~Q~~~vn~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~ 303 (384)
T PF03148_consen 224 REDIDSILEQTANDLRAQADAVNAALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLE 303 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 333334444444444444433456677777777777777777777777777777777777777766666554433
Q ss_pred HhcCc------HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 154 LQKGE------EDLAREAL-KRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQE 206 (335)
Q Consensus 154 L~~G~------EdLAreAL-~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e 206 (335)
....+ -|-|...| .+...+...+..|+..+...+.....|......|+..|.-
T Consensus 304 ~R~~RP~vElcrD~~q~~L~~Ev~~l~~~i~~L~~~L~~a~~~l~~L~~~~~~Le~di~~ 363 (384)
T PF03148_consen 304 NRTQRPNVELCRDPPQYGLIEEVKELRESIEALQEKLDEAEASLQKLERTRLRLEEDIAV 363 (384)
T ss_pred hHhcCCchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 25555555 4677777777777777777777777777777777665544
No 123
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=82.04 E-value=36 Score=30.21 Aligned_cols=94 Identities=18% Similarity=0.249 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQL 183 (335)
Q Consensus 104 LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~le~ql 183 (335)
..+.+..+...|.+++..++.++..--.++.+...+......... -...-.|+--+.|-..-..+.-.+..++..-
T Consensus 25 ~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~----~f~~ysE~dik~AYe~A~~lQ~~L~~~re~E 100 (159)
T PF05384_consen 25 ARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSR----NFDRYSEEDIKEAYEEAHELQVRLAMLRERE 100 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhcccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677888888888888888888888887777766655544332 2334456666666555555554444444444
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019853 184 DQQKNVVNNLVSNTRLLE 201 (335)
Q Consensus 184 e~~~~~v~~Lk~~l~~Le 201 (335)
.++...-+.|+..+..++
T Consensus 101 ~qLr~rRD~LErrl~~l~ 118 (159)
T PF05384_consen 101 KQLRERRDELERRLRNLE 118 (159)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444443333
No 124
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.01 E-value=65 Score=33.07 Aligned_cols=48 Identities=27% Similarity=0.412 Sum_probs=28.2
Q ss_pred CHHHHHHHHHHHcCCCCCCCCCCCCCCcCCCCCCCCCCChhhHHHHHHHHHHh
Q 019853 279 SVDDDLANLKKELSGSSKKGELPPGRAAASSTNTAFPFRDAEIEKELNELRQR 331 (335)
Q Consensus 279 ~vddeLa~LKa~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (335)
.|++.|+.++.-+....--..+- .+.-.....|.|.+||.||++|-..
T Consensus 338 kVed~Ldev~et~d~~~EV~~~l-----a~~~~~~~d~~de~lEkEL~~L~~D 385 (439)
T KOG2911|consen 338 KVEDVLDEVNETLDRQEEVEDAL-----ASYNVNNIDFEDEDLEKELEDLEAD 385 (439)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHH-----hcCCCCCCccchHHHHHHHHHHHhc
Confidence 47777777777654321100000 1112234569999999999998643
No 125
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=81.70 E-value=65 Score=32.88 Aligned_cols=127 Identities=25% Similarity=0.277 Sum_probs=80.5
Q ss_pred hHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019853 78 LFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKG 157 (335)
Q Consensus 78 if~Rl~~lira~in~~ldk~EDPe~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G 157 (335)
|=.-+..+++-..|++-..+..-+..+.--|+++++...++.-.++..+-+-...+..+..++..+..-+.-.+.|..-=
T Consensus 250 LR~~l~~~l~~tan~lr~Q~~~ve~af~~ri~etqdar~kL~~ql~k~leEi~~~e~~I~~le~airdK~~pLKVAqTRl 329 (421)
T KOG2685|consen 250 LREALDQTLRETANDLRTQADAVELAFKKRIRETQDARNKLEWQLAKTLEEIADAENNIEALERAIRDKEGPLKVAQTRL 329 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccccHHHHHHHH
Confidence 44455566666667776677777788888888888888888888888888888888888888888777777666665432
Q ss_pred c-----------HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 158 E-----------EDLAREAL-KRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKI 204 (335)
Q Consensus 158 ~-----------EdLAreAL-~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki 204 (335)
+ -|.|...| .+...+...+..|+..+++++.....|......|+..|
T Consensus 330 e~Rt~RPnvELCrD~AQ~~L~~EV~~l~~t~~~L~~kL~eA~~~l~~L~~~~~rLe~di 388 (421)
T KOG2685|consen 330 ENRTYRPNVELCRDQAQYRLVDEVHELDDTVAALKEKLDEAEDSLKLLVNHRARLERDI 388 (421)
T ss_pred HHcccCCchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 24444433 23344444444444444444444444444444444433
No 126
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=81.58 E-value=56 Score=32.09 Aligned_cols=49 Identities=8% Similarity=0.231 Sum_probs=33.2
Q ss_pred chHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 77 NLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQV 125 (335)
Q Consensus 77 sif~Rl~~lira~in~~ldk~EDPe~~LdQ~Ireme~~L~kar~~lA~v 125 (335)
|||+||+.=++..+..++.+++.-...+|..+.+++..-..+.+..+.+
T Consensus 73 ~~l~klf~k~~~~~~~~~~ky~sv~~qId~I~~~L~~~~~~L~~d~~~L 121 (333)
T PF05816_consen 73 GFLGKLFGKAKNSLERYFAKYQSVQSQIDKIIAELESGQDELLRDNAML 121 (333)
T ss_pred hHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777766655667777777887777777777777666666666665543
No 127
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=81.10 E-value=48 Score=33.54 Aligned_cols=21 Identities=14% Similarity=0.218 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019853 118 MRQATAQVLASQKRLENKCKA 138 (335)
Q Consensus 118 ar~~lA~v~A~~k~le~kl~~ 138 (335)
+|..+.+|..+-..|+++-.+
T Consensus 290 Lr~~I~~VarENs~LqrQKle 310 (442)
T PF06637_consen 290 LRAGIERVARENSDLQRQKLE 310 (442)
T ss_pred HhhhHHHHHHhhhHHHHHHHH
Confidence 344444444444444444333
No 128
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=80.85 E-value=34 Score=29.16 Aligned_cols=95 Identities=13% Similarity=0.152 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 112 NDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVN 191 (335)
Q Consensus 112 e~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~le~qle~~~~~v~ 191 (335)
+.....+...++.+.......+.++..+.....++..+...-...|-. +.....+..-+..|...+.++...+.
T Consensus 15 ~~~ee~a~~~L~~a~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~g~~------~~~l~~~~~fl~~L~~~i~~q~~~v~ 88 (146)
T PRK07720 15 ENEKEKALGEYEEAVSRFEQVAEKLYELLKQKEDLEQAKEEKLQSGLS------IQEIRHYQQFVTNLERTIDHYQLLVM 88 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566777888888888888888888888888888888776666642 33345566666777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019853 192 NLVSNTRLLESKIQEARSKKD 212 (335)
Q Consensus 192 ~Lk~~l~~Le~ki~e~k~kr~ 212 (335)
.++..+..-...+.+...++.
T Consensus 89 ~~~~~ve~~r~~~~ea~~~~k 109 (146)
T PRK07720 89 QAREQMNRKQQDLTEKNIEVK 109 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 776666665555555544443
No 129
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=80.64 E-value=1e+02 Score=34.38 Aligned_cols=23 Identities=26% Similarity=0.260 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019853 199 LLESKIQEARSKKDTLKARAQSA 221 (335)
Q Consensus 199 ~Le~ki~e~k~kr~~LkAr~~~A 221 (335)
..+..++++..+.+.|.+....+
T Consensus 414 ~~kneL~~a~ekld~mgthl~ma 436 (1265)
T KOG0976|consen 414 AAKNELQEALEKLDLMGTHLSMA 436 (1265)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHH
Confidence 33444555555655555544444
No 130
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=80.42 E-value=61 Score=31.76 Aligned_cols=104 Identities=9% Similarity=0.124 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 111 MNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVV 190 (335)
Q Consensus 111 me~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~le~qle~~~~~v 190 (335)
+...+.+++.++......-..++++++.++..+..+...... -..+...-....+....++.+....+..++...+..+
T Consensus 72 l~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~-~~~~~~~~~~n~~~~~~~~t~~la~~t~~L~~~~~~l 150 (301)
T PF06120_consen 72 LRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAE-KGITENGYIINHLMSQADATRKLAEATRELAVAQERL 150 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555444444445555566666555554432111 1111111222333445566666666666777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 191 NNLVSNTRLLESKIQEARSKKDTLK 215 (335)
Q Consensus 191 ~~Lk~~l~~Le~ki~e~k~kr~~Lk 215 (335)
.++..........+.....++-.+.
T Consensus 151 ~q~~~k~~~~q~~l~~~~~~~~~~i 175 (301)
T PF06120_consen 151 EQMQSKASETQATLNDLTEQRIDLI 175 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777766666554
No 131
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=80.41 E-value=71 Score=34.23 Aligned_cols=102 Identities=17% Similarity=0.229 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhcCcHHHHHHHHHHHHH-------------HHHHHHHH
Q 019853 118 MRQATAQVLASQKRLENKCKAAEQASEDW-----YRKAQLALQKGEEDLAREALKRRKS-------------YADNANAL 179 (335)
Q Consensus 118 ar~~lA~v~A~~k~le~kl~~~~~~~~~~-----e~rA~~AL~~G~EdLAreAL~rk~~-------------~e~q~~~l 179 (335)
-|.++|.+.-....++.++...+..+... .+++..-+=.|.- |+ +|+..... ....+..+
T Consensus 343 ~RDALAAA~kAY~~yk~kl~~vEr~~~~~g~~~d~~rika~VIrG~~-l~-eal~~~~e~~~p~e~~~~~~~e~~ei~~~ 420 (652)
T COG2433 343 ERDALAAAYKAYLAYKPKLEKVERKLPELGIWKDVERIKALVIRGYP-LA-EALSKVKEEERPREKEGTEEEERREITVY 420 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHeecCCc-HH-HHHHHHHhhhccccccccccccccchhHH
Confidence 45667777777777777888777776655 4555555555552 11 11111111 11122334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 180 KAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSA 221 (335)
Q Consensus 180 e~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~~~A 221 (335)
...+......++.|+.....|+..+.+++.....|.++...+
T Consensus 421 ~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~ 462 (652)
T COG2433 421 EKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERF 462 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555555555555555555555555444444
No 132
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=80.40 E-value=73 Score=32.61 Aligned_cols=24 Identities=4% Similarity=-0.062 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 103 ILEQAVLEMNDDLVKMRQATAQVL 126 (335)
Q Consensus 103 ~LdQ~Ireme~~L~kar~~lA~v~ 126 (335)
-+++.+.+++.++..++..+..+.
T Consensus 208 ~l~~~l~~~~~~l~~~~a~~~~l~ 231 (498)
T TIGR03007 208 EAQEELEAARLELNEAIAQRDALK 231 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666665554443
No 133
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=80.08 E-value=61 Score=31.75 Aligned_cols=44 Identities=18% Similarity=0.259 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 178 ALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSA 221 (335)
Q Consensus 178 ~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~~~A 221 (335)
.++.+...+.....+.-.....++..+.++..+++.+.++...+
T Consensus 82 ~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~ 125 (314)
T PF04111_consen 82 ELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYA 125 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444445555555555544444
No 134
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=80.05 E-value=63 Score=35.67 Aligned_cols=46 Identities=15% Similarity=0.149 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRK 149 (335)
Q Consensus 104 LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~r 149 (335)
++..|.+++++..++++....+......+++..++++.+.++++++
T Consensus 518 ~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~ 563 (782)
T PRK00409 518 LNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEE 563 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444333333333333333333333333333333
No 135
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated
Probab=79.84 E-value=37 Score=28.90 Aligned_cols=97 Identities=11% Similarity=0.069 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 110 EMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNV 189 (335)
Q Consensus 110 eme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~le~qle~~~~~ 189 (335)
=.+.....+...++.+.......+.++..+......|..+.......|=. ......+..-+..|...+..+...
T Consensus 13 l~~~~ee~a~~~la~a~~~~~~~~~~L~~L~~y~~~y~~~~~~~~~~g~~------~~~l~~~~~fi~~L~~~I~~q~~~ 86 (147)
T PRK05689 13 LAEKAEEQAALQLGQARQELQQAEQQLKMLEDYRLEYRQQLNDRGSAGMT------SSWWINYQQFLQQLEKAITQQRQQ 86 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcC------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455667778888888888888888998888888888877665444432 223445555666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019853 190 VNNLVSNTRLLESKIQEARSKKD 212 (335)
Q Consensus 190 v~~Lk~~l~~Le~ki~e~k~kr~ 212 (335)
+..++..+......+-+...++.
T Consensus 87 v~~~~~~ve~~r~~~~~a~~~~k 109 (147)
T PRK05689 87 LTQWTQKVDNARKYWQEKKQRLE 109 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666555555555444433
No 136
>smart00685 DM14 Repeats in fly CG4713, worm Y37H9A.3 and human FLJ20241.
Probab=79.83 E-value=9.3 Score=28.46 Aligned_cols=44 Identities=27% Similarity=0.379 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Q 019853 137 KAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALK 180 (335)
Q Consensus 137 ~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~le 180 (335)
+.+++...+|..-|..|-+.||.+-||..+.--+.++..+...+
T Consensus 2 ~~L~~R~~~yk~Aa~~AK~~gd~~kAr~~~R~~K~~~~~I~~~~ 45 (59)
T smart00685 2 ALLQQRQEQYKQAALQAKRAGDEEKARRHLRIAKQFDDAIKAAR 45 (59)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhHHHHHHHHH
Confidence 45677788889999999999999999999888888887776554
No 137
>PLN02718 Probable galacturonosyltransferase
Probab=79.82 E-value=9.7 Score=40.52 Aligned_cols=108 Identities=18% Similarity=0.228 Sum_probs=85.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Q 019853 99 DPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANA 178 (335)
Q Consensus 99 DPe~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~ 178 (335)
+|..+-|-.|+.|+++|..||.-+ .+|..+.-.+-..++...+.+.+.-.-.| ..+-||=..+..+....+..+..
T Consensus 158 ~~~~~~d~~v~~~~dql~~ak~y~--~~a~~~~~~~~~~el~~~i~e~~~~l~~~--~~d~~lp~~~~~~~~~m~~~~~~ 233 (603)
T PLN02718 158 QPRRATDEKVKEIRDKIIQAKAYL--NLAPPGSNSQLVKELRLRTKELERAVGDA--TKDKDLSKSALQRMKSMEVTLYK 233 (603)
T ss_pred CcccCcHHHHHHHHHHHHHHHHHH--HHhccCCcHHHHHHHHHHHHHHHHHHhcc--cCCCCCCHhHHHHHHHHHHHHHH
Confidence 567889999999999999999887 66766666667777777887777766666 55566999998888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 179 LKAQLDQQKNVVNNLVSNTRLLESKIQEARSK 210 (335)
Q Consensus 179 le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~k 210 (335)
-+.........+.+|+.-+..+|.++...+.+
T Consensus 234 a~~~~~d~~~~~~klr~~~~~~e~~~~~~~~q 265 (603)
T PLN02718 234 ASRVFPNCPAIATKLRAMTYNTEEQVRAQKNQ 265 (603)
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888777665544
No 138
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=79.29 E-value=1.2e+02 Score=34.49 Aligned_cols=20 Identities=25% Similarity=0.343 Sum_probs=10.8
Q ss_pred cHHHHHHHHHHHHHhHHHHH
Q 019853 238 SALSAFEKMEEKVLTMESQA 257 (335)
Q Consensus 238 ~a~~~feRmEeki~~~EA~A 257 (335)
.+...+.++.+++..++-..
T Consensus 962 ~are~l~~Lq~k~~~l~k~v 981 (1174)
T KOG0933|consen 962 EAREELKKLQEKKEKLEKTV 981 (1174)
T ss_pred HHHHHHHHhhHHHHHHHhhc
Confidence 34555666666655555443
No 139
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=78.28 E-value=69 Score=31.15 Aligned_cols=17 Identities=18% Similarity=0.163 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019853 107 AVLEMNDDLVKMRQATA 123 (335)
Q Consensus 107 ~Ireme~~L~kar~~lA 123 (335)
.+.+.+.++..++..+.
T Consensus 87 ~l~~a~a~l~~a~a~l~ 103 (346)
T PRK10476 87 TVAQAQADLALADAQIM 103 (346)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444555544444443
No 140
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=78.21 E-value=45 Score=28.97 Aligned_cols=55 Identities=18% Similarity=0.196 Sum_probs=31.5
Q ss_pred CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 99 DP-EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA 153 (335)
Q Consensus 99 DP-e~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~A 153 (335)
.| ..++++--.....++.++......+-......+.++...+.++.+.-+.|...
T Consensus 45 ~Pi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~A~~ea~~ii~~A~~~ 100 (156)
T CHL00118 45 KPLLKVLDERKEYIRKNLTKASEILAKANELTKQYEQELSKARKEAQLEITQSQKE 100 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45 35666666666666666666655555555555555555555555555444443
No 141
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=78.20 E-value=30 Score=36.68 Aligned_cols=58 Identities=14% Similarity=0.224 Sum_probs=32.3
Q ss_pred hhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 94 LSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL 152 (335)
Q Consensus 94 ldk~EDPe~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~ 152 (335)
-..+-||..+|++.=..-.....++++.+-......+....++. -..+++.+.++...
T Consensus 145 ~~~lp~~~eil~~~~L~T~~~~~~~~~~~k~~~~~w~~~~~~Lp-~~~~~~~yk~~v~~ 202 (555)
T TIGR03545 145 DSQLPDPRALLKGEDLKTVETAEEIEKSLKAMQQKWKKRKKDLP-NKQDLEEYKKRLEA 202 (555)
T ss_pred cccCCCHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcC-CchhHHHHHHHHHH
Confidence 34455899998877655555666666555544444443333332 15555555555554
No 142
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=78.18 E-value=1.1e+02 Score=33.30 Aligned_cols=27 Identities=11% Similarity=0.153 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 101 EKILEQAVLEMNDDLVKMRQATAQVLA 127 (335)
Q Consensus 101 e~~LdQ~Ireme~~L~kar~~lA~v~A 127 (335)
..-|+..|.++++++.++...+.....
T Consensus 196 ~~~L~~ql~~l~~~l~~aE~~l~~fk~ 222 (754)
T TIGR01005 196 ADFLAPEIADLSKQSRDAEAEVAAYRA 222 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666555543
No 143
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.11 E-value=67 Score=30.92 Aligned_cols=60 Identities=13% Similarity=0.231 Sum_probs=45.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhcCc
Q 019853 99 DPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASED----WYRKAQLALQKGE 158 (335)
Q Consensus 99 DPe~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~----~e~rA~~AL~~G~ 158 (335)
.-..-|+-.|.+....+...+..+.+.-+.-+.++.+++.+.+.|.+ +..||+.+-..|-
T Consensus 52 ~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~nG~ 115 (265)
T COG3883 52 NEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQVNGT 115 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 33455777777888888888888888888888888888887777765 4567777777776
No 144
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=77.87 E-value=9.2 Score=39.57 Aligned_cols=49 Identities=10% Similarity=0.159 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 172 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQS 220 (335)
Q Consensus 172 ~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~~~ 220 (335)
.+..+.+|+++++.+++..+.+......++.+|++++.+...|+.+...
T Consensus 74 qQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a 122 (475)
T PRK13729 74 MQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKA 122 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 3445666677777777777777777777788888888888888777643
No 145
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=77.84 E-value=1.1e+02 Score=33.34 Aligned_cols=138 Identities=14% Similarity=0.185 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhcCCCCC
Q 019853 161 LAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKV---SEMLGNVNTS 237 (335)
Q Consensus 161 LAreAL~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~~~AkAq~~v---~~~~~~~~~~ 237 (335)
-.-.....+...-.....+...+..+..++.++......+..+|..++.+..-+-.....-...... .-.+.+...-
T Consensus 483 ~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~ 562 (698)
T KOG0978|consen 483 KNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQ 562 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555555555555555555555555555555555444433322221111 0000111122
Q ss_pred cHHHHHHHHHHHHHhHHHHHHHhhcccCCChhHHHhhhcc--CCHHHHHHHHHHHcCCCCCCCC
Q 019853 238 SALSAFEKMEEKVLTMESQADSLNQLTTDDLEGKFALLET--SSVDDDLANLKKELSGSSKKGE 299 (335)
Q Consensus 238 ~a~~~feRmEeki~~~EA~AeA~~eL~~~~Le~k~a~le~--~~vddeLa~LKa~l~~~~~~~~ 299 (335)
++...++.+..+.+.-++..+=+.... .++..++..... ..+++++++|+.++....+...
T Consensus 563 e~~~~~~~Lq~~~ek~~~~le~i~~~~-~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~~~ 625 (698)
T KOG0978|consen 563 EAKQSLEDLQIELEKSEAKLEQIQEQY-AELELELEIEKFKRKRLEEELERLKRKLERLKKEES 625 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 334445555555554444444222110 112222222221 3589999999999866544433
No 146
>PRK00846 hypothetical protein; Provisional
Probab=77.56 E-value=24 Score=27.71 Aligned_cols=52 Identities=10% Similarity=0.005 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 170 KSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSA 221 (335)
Q Consensus 170 ~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~~~A 221 (335)
...++.+..|+..+.-++..++.|...+......|..++.+...|.-|....
T Consensus 9 ~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~ 60 (77)
T PRK00846 9 QALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 60 (77)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456677777777777777777777777777777777777777776665554
No 147
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=77.18 E-value=44 Score=28.30 Aligned_cols=17 Identities=24% Similarity=0.452 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019853 200 LESKIQEARSKKDTLKA 216 (335)
Q Consensus 200 Le~ki~e~k~kr~~LkA 216 (335)
|+..|.+++.+.+.|..
T Consensus 103 le~e~~~~~~r~~dL~~ 119 (132)
T PF07926_consen 103 LEKELSELEQRIEDLNE 119 (132)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 148
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=77.16 E-value=81 Score=35.70 Aligned_cols=32 Identities=13% Similarity=0.175 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 175 NANALKAQLDQQKNVVNNLVSNTRLLESKIQE 206 (335)
Q Consensus 175 q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e 206 (335)
.+..++..|..+......++..|..|+.+...
T Consensus 343 EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~ 374 (1200)
T KOG0964|consen 343 ELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRD 374 (1200)
T ss_pred HHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444443333
No 149
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=76.82 E-value=47 Score=28.47 Aligned_cols=47 Identities=17% Similarity=0.306 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYR 148 (335)
Q Consensus 102 ~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~ 148 (335)
.+|++-=..+.+.+..+...-..+.......+..+..+..++....+
T Consensus 34 ~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~Ar~eA~~~~~ 80 (141)
T PRK08476 34 KFMDNRNASIKNDLEKVKTNSSDVSEIEHEIETILKNAREEANKIRQ 80 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45554444555555555555444444555555555555555555433
No 150
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=76.73 E-value=63 Score=29.83 Aligned_cols=47 Identities=21% Similarity=0.251 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKA 150 (335)
Q Consensus 104 LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA 150 (335)
-+-.+.++..++..+...+-.+.+....+.++.+.+..++.....+-
T Consensus 107 ~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKL 153 (205)
T KOG1003|consen 107 AESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKL 153 (205)
T ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555555555555555555533
No 151
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=76.45 E-value=1.1e+02 Score=32.48 Aligned_cols=32 Identities=22% Similarity=0.369 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 173 ADNANALKAQLDQQKNVVNNLVSNTRLLESKI 204 (335)
Q Consensus 173 e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki 204 (335)
......+..+++.+...+.+|+..+..+..+.
T Consensus 205 ~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~ 236 (546)
T PF07888_consen 205 KEERESLKEQLAEARQRIRELEEDIKTLTQKE 236 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555555555554444444
No 152
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=76.40 E-value=20 Score=27.20 Aligned_cols=48 Identities=15% Similarity=0.243 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 173 ADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQS 220 (335)
Q Consensus 173 e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~~~ 220 (335)
++.+..|+..+.-+...+++|..-+.....+|..++.+...|..+...
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 50 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRE 50 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555555555555555544443
No 153
>PRK04406 hypothetical protein; Provisional
Probab=75.81 E-value=31 Score=26.75 Aligned_cols=49 Identities=14% Similarity=0.205 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 171 SYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQ 219 (335)
Q Consensus 171 ~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~~ 219 (335)
..+..+..|+..+.-++..++.|..-+-.....|..++.+...|.-|..
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~ 56 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVK 56 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566667777777777777777777777777777777777666655443
No 154
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=75.72 E-value=97 Score=31.54 Aligned_cols=118 Identities=19% Similarity=0.163 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQL 183 (335)
Q Consensus 104 LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~le~ql 183 (335)
-...|.+++.++..++..++.+...-.-..-++...+.++.........-+..=-. ........++.+...+...+
T Consensus 283 ~s~~i~~Lr~~~~~~~~~~~~l~~~~~~~~p~~~~~~~q~~~~~~~~~~e~~~~~~----~~~~~~~~l~~~~~~L~~~~ 358 (458)
T COG3206 283 ESPTIQDLRQQYAQVRQQIADLSTELGAKHPQLVALEAQLAELRQQIAAELRQILA----SLPNELALLEQQEAALEKEL 358 (458)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhcccChHHHhHHHHHHHHHHHHHHHHHHHHH----hchhHHHHHHHHHHHHHHHH
Confidence 33356666666666666666655554444444444444444444333322211000 00000112333333333333
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 184 DQQKNVVN---NLVSNTRLLESKIQEARSKKDTLKARAQSAKTAT 225 (335)
Q Consensus 184 e~~~~~v~---~Lk~~l~~Le~ki~e~k~kr~~LkAr~~~AkAq~ 225 (335)
...+.... ++..++.+|+.+++..+.-.++|..|++....++
T Consensus 359 ~~l~~~~~~~~~~~~~l~~L~Re~~~~r~~ye~lL~r~qe~~~~~ 403 (458)
T COG3206 359 AQLKGRLSKLPKLQVQLRELEREAEAARSLYETLLQRYQELSIQE 403 (458)
T ss_pred HHHHHHHhhchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333332 3344566777777777777777777777766654
No 155
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=75.65 E-value=35 Score=30.03 Aligned_cols=53 Identities=21% Similarity=0.344 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 173 ADNANALKAQLDQQKNVVNNLVS---NTRLLESKIQEARSKKDTLKARAQSAKTAT 225 (335)
Q Consensus 173 e~q~~~le~qle~~~~~v~~Lk~---~l~~Le~ki~e~k~kr~~LkAr~~~AkAq~ 225 (335)
..++..++.++.....++..|+. ....|+.+|++++.+.......+...-+..
T Consensus 26 ~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~ 81 (155)
T PF06810_consen 26 KEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLAQM 81 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677777777777777777777 677777777777777775554444443333
No 156
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=75.58 E-value=1e+02 Score=31.66 Aligned_cols=111 Identities=18% Similarity=0.157 Sum_probs=55.4
Q ss_pred hhccCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 019853 94 LSSFEDPE--KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKS 171 (335)
Q Consensus 94 ldk~EDPe--~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~ 171 (335)
+..-+||. .-+-.|++.|...+.+.-.++......-...+..+...+.+... +..........|++.-.++++
T Consensus 136 l~~~eda~~~~R~ai~~~~l~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~----~~~eq~~q~~kl~~~~~E~kk- 210 (420)
T COG4942 136 LVSPEDAQRSVRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTT----LLSEQRAQQAKLAQLLEERKK- 210 (420)
T ss_pred hcChhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH-
Confidence 44456664 45556666666655555555555554444444444444433332 222233333445544433333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 172 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKD 212 (335)
Q Consensus 172 ~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~ 212 (335)
....+..++....+...+|..+-..|+..|..+.....
T Consensus 211 ---~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~aA 248 (420)
T COG4942 211 ---TLAQLNSELSADQKKLEELRANESRLKNEIASAEAAAA 248 (420)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 23345555555556666666666666666665554433
No 157
>PRK00736 hypothetical protein; Provisional
Probab=75.32 E-value=25 Score=26.66 Aligned_cols=48 Identities=19% Similarity=0.272 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 173 ADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQS 220 (335)
Q Consensus 173 e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~~~ 220 (335)
++.+..|+..+.-++..++.|..-+-+-...|..++.+...|.-|...
T Consensus 4 e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 4 EERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666666666666666666666555433
No 158
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=75.07 E-value=60 Score=28.77 Aligned_cols=6 Identities=17% Similarity=0.445 Sum_probs=2.1
Q ss_pred HHHHHH
Q 019853 179 LKAQLD 184 (335)
Q Consensus 179 le~qle 184 (335)
++..+.
T Consensus 135 l~~~~~ 140 (191)
T PF04156_consen 135 LDESIK 140 (191)
T ss_pred HHHHHH
Confidence 333333
No 159
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=75.01 E-value=1.3e+02 Score=32.79 Aligned_cols=49 Identities=16% Similarity=0.112 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKA 150 (335)
Q Consensus 102 ~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA 150 (335)
....|.+.-+......+...+.++.+....++..+..++.+........
T Consensus 492 ~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~ 540 (698)
T KOG0978|consen 492 IKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNE 540 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh
Confidence 3455666666666666666666666666666666666666555544443
No 160
>PRK00295 hypothetical protein; Provisional
Probab=75.01 E-value=26 Score=26.56 Aligned_cols=47 Identities=13% Similarity=0.147 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 173 ADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQ 219 (335)
Q Consensus 173 e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~~ 219 (335)
++.+..|+..+.-++..++.|..-+-+....|..++.+...|.-|..
T Consensus 4 e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~ 50 (68)
T PRK00295 4 EERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQE 50 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555666655555555555655555555544433
No 161
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=75.00 E-value=18 Score=27.39 Aligned_cols=48 Identities=13% Similarity=0.175 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 168 RRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (335)
Q Consensus 168 rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~Lk 215 (335)
|...+|..+.-.+..++++...|......+..|+..+..+..+...+.
T Consensus 5 Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 5 RIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444555555555555555555555555555555555555555555554
No 162
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=75.00 E-value=1.2e+02 Score=32.21 Aligned_cols=13 Identities=15% Similarity=0.322 Sum_probs=6.8
Q ss_pred HHHHHHHHHcCCC
Q 019853 282 DDLANLKKELSGS 294 (335)
Q Consensus 282 deLa~LKa~l~~~ 294 (335)
+...+|..+++..
T Consensus 445 ~yi~~Le~r~~~~ 457 (546)
T PF07888_consen 445 EYIERLEQRLDKV 457 (546)
T ss_pred HHHHHHHHHHHHh
Confidence 3445566666553
No 163
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=74.71 E-value=42 Score=26.86 Aligned_cols=58 Identities=17% Similarity=0.295 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHH
Q 019853 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDL 161 (335)
Q Consensus 104 LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdL 161 (335)
|...+..+...+..+...+..+-.....++.+.......+....+....+|..-.+.|
T Consensus 5 L~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~l 62 (127)
T smart00502 5 LEELLTKLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQL 62 (127)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666666666666666667777777777777777777777766544433
No 164
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=74.63 E-value=88 Score=33.78 Aligned_cols=84 Identities=15% Similarity=0.208 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH--HHHHHHHHHHHhcCCCCC
Q 019853 161 LAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKD-TLKARAQ--SAKTATKVSEMLGNVNTS 237 (335)
Q Consensus 161 LAreAL~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~-~LkAr~~--~AkAq~~v~~~~~~~~~~ 237 (335)
+++.+.........++..++.++.+...+...| +..++++.+.++ .+.+... .--|.+++. -.-|..
T Consensus 372 ~~~~~~~~~~~~~~~l~~le~~l~~~~~~~~~L-------~~~~~~l~~~r~dW~laEae~Ll~lA~q~L~---l~~dv~ 441 (656)
T PRK06975 372 KTEQAQASVHQLDSQFAQLDGKLADAQSAQQAL-------EQQYQDLSRNRDDWMIAEVEQMLSSASQQLQ---LTGNVQ 441 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhcChhhhHHHHHHHHHHHHHHHHH---HhCCHH
Confidence 444444444444555555555544444444444 444444433333 3333222 112232221 122456
Q ss_pred cHHHHHHHHHHHHHhHH
Q 019853 238 SALSAFEKMEEKVLTME 254 (335)
Q Consensus 238 ~a~~~feRmEeki~~~E 254 (335)
.|...|+-..+++.++.
T Consensus 442 ~A~~~L~~AD~~La~~~ 458 (656)
T PRK06975 442 LALIALQNADARLATSD 458 (656)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 67777777777765544
No 165
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=74.59 E-value=90 Score=30.61 Aligned_cols=41 Identities=12% Similarity=0.229 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQA 142 (335)
Q Consensus 102 ~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~ 142 (335)
..|.-.|.++++.|...++.+..+...-..++..+..+...
T Consensus 70 ~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~ 110 (301)
T PF06120_consen 70 TQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQ 110 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555555555544443
No 166
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=74.24 E-value=45 Score=26.99 Aligned_cols=95 Identities=17% Similarity=0.268 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 113 DDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYR---KAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNV 189 (335)
Q Consensus 113 ~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~---rA~~AL~~G~EdLAreAL~rk~~~e~q~~~le~qle~~~~~ 189 (335)
..+.+.+..+..+......++.++.+...-...+.. -...=..=|. ++.+ .....-...++..++.....
T Consensus 6 ~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~------vfv~-~~~~ea~~~Le~~~e~le~~ 78 (105)
T cd00632 6 AQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVGN------VLVK-QEKEEARTELKERLETIELR 78 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhh------HHhh-ccHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555566665555444433331 1111111222 3332 34445555566666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 190 VNNLVSNTRLLESKIQEARSKKDTL 214 (335)
Q Consensus 190 v~~Lk~~l~~Le~ki~e~k~kr~~L 214 (335)
+..+..++..++.++.+++.++..+
T Consensus 79 i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 79 IKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666655543
No 167
>PRK10884 SH3 domain-containing protein; Provisional
Probab=74.22 E-value=73 Score=29.40 Aligned_cols=18 Identities=6% Similarity=0.300 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019853 108 VLEMNDDLVKMRQATAQV 125 (335)
Q Consensus 108 Ireme~~L~kar~~lA~v 125 (335)
+-+++.++.+++..++.+
T Consensus 95 lp~le~el~~l~~~l~~~ 112 (206)
T PRK10884 95 VPDLENQVKTLTDKLNNI 112 (206)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345556666665555543
No 168
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=74.08 E-value=54 Score=27.79 Aligned_cols=43 Identities=16% Similarity=0.210 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 105 EQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWY 147 (335)
Q Consensus 105 dQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e 147 (335)
++.++++...+.+.+..+..+......+...+.++..-++..+
T Consensus 5 ~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~ 47 (140)
T PRK03947 5 EQELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLE 47 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666677777777777777666666666666655554443
No 169
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=73.98 E-value=1.5e+02 Score=32.76 Aligned_cols=32 Identities=3% Similarity=0.122 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 115 LVKMRQATAQVLASQKRLENKCKAAEQASEDW 146 (335)
Q Consensus 115 L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~ 146 (335)
+-++-+.+..+..+...|+.++....+.+...
T Consensus 65 ~Pr~~~ev~~l~~ea~~L~~~~~~v~~~~~~~ 96 (766)
T PF10191_consen 65 VPRVLREVDRLRQEAASLQEQMASVQEEIKAV 96 (766)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33344444444444444444444444444433
No 170
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=73.92 E-value=1e+02 Score=30.97 Aligned_cols=28 Identities=14% Similarity=0.270 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 101 EKILEQAVLEMNDDLVKMRQATAQVLAS 128 (335)
Q Consensus 101 e~~LdQ~Ireme~~L~kar~~lA~v~A~ 128 (335)
...-+..|.++..++.+++..++.....
T Consensus 249 ~~~~~~~i~~l~~~l~~le~~l~~l~~~ 276 (444)
T TIGR03017 249 EVIANPIIQNLKTDIARAESKLAELSQR 276 (444)
T ss_pred hhhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333445566666666666666655443
No 171
>PRK00295 hypothetical protein; Provisional
Probab=73.91 E-value=34 Score=25.92 Aligned_cols=47 Identities=6% Similarity=0.102 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 168 RRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 214 (335)
Q Consensus 168 rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~L 214 (335)
|..++|.++.-.+..++.+...+.+....+..|+.++..+..+...+
T Consensus 6 Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 6 RVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555666666666666666666666666666666666665555544
No 172
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=73.82 E-value=1.1 Score=37.46 Aligned_cols=50 Identities=14% Similarity=0.259 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA 153 (335)
Q Consensus 104 LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~A 153 (335)
+|.+|..+..++..+....+.+...-..++.++..+......+.+....|
T Consensus 23 VD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~a 72 (131)
T PF05103_consen 23 VDDFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQA 72 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhhh
Confidence 46666677777777766666666666666666666655555555444333
No 173
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=73.72 E-value=79 Score=29.56 Aligned_cols=38 Identities=11% Similarity=0.275 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 172 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARS 209 (335)
Q Consensus 172 ~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~ 209 (335)
.+.++..++..++.+...+...+..+.+++..++..+.
T Consensus 68 ~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~ 105 (302)
T PF10186_consen 68 LRERLERLRERIERLRKRIEQKRERLEELRESLEQRRS 105 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444333
No 174
>PRK02793 phi X174 lysis protein; Provisional
Probab=73.71 E-value=28 Score=26.71 Aligned_cols=47 Identities=15% Similarity=0.178 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 172 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARA 218 (335)
Q Consensus 172 ~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~ 218 (335)
.++.+..|+..+.-++..++.|..-+-+....|..++.+...|.-|.
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl 52 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKL 52 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666666666666666666666666655555443
No 175
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=73.70 E-value=2.2 Score=35.58 Aligned_cols=65 Identities=9% Similarity=0.226 Sum_probs=23.5
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 88 SYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL 152 (335)
Q Consensus 88 a~in~~ldk~EDPe~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~ 152 (335)
.-|++.|+.+.+-...|...+.++...+..+...+...-.....+.+.+..++..+.+....|..
T Consensus 21 ~eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~aq~~a~~~~~~A~~ 85 (131)
T PF05103_consen 21 DEVDDFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQAQETADEIKAEAEE 85 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT-------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence 34666666666666667777777777777777777776666666666666666665555554443
No 176
>PRK04325 hypothetical protein; Provisional
Probab=73.64 E-value=35 Score=26.31 Aligned_cols=49 Identities=14% Similarity=0.219 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 172 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQS 220 (335)
Q Consensus 172 ~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~~~ 220 (335)
.++.+..|+..+.-++..++.|..-+-+....|..++.+...|.-|...
T Consensus 7 ~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 7 MEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666666666666666666666666554433
No 177
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=73.34 E-value=69 Score=28.68 Aligned_cols=56 Identities=9% Similarity=0.166 Sum_probs=33.7
Q ss_pred CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 99 DP-EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLAL 154 (335)
Q Consensus 99 DP-e~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL 154 (335)
.| ..+|+.=-..+..++.++......+-......+.++...+.+....-+.|....
T Consensus 54 ~PI~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~EA~~ii~~A~~ea 110 (181)
T PRK13454 54 PRIGAVLAERQGTITNDLAAAEELKQKAVEAEKAYNKALADARAEAQRIVAETRAEI 110 (181)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45 366666666666666666666666555666666666666666666555554433
No 178
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=73.00 E-value=1.1e+02 Score=31.07 Aligned_cols=28 Identities=11% Similarity=0.219 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 124 QVLASQKRLENKCKAAEQASEDWYRKAQ 151 (335)
Q Consensus 124 ~v~A~~k~le~kl~~~~~~~~~~e~rA~ 151 (335)
..-+....+..++..++.++..++....
T Consensus 169 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 196 (457)
T TIGR01000 169 AAEKTKAQLDQQISKTDQKLQDYQALKN 196 (457)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555666666666666555444
No 179
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=72.61 E-value=1e+02 Score=30.24 Aligned_cols=38 Identities=11% Similarity=0.134 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 178 ALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (335)
Q Consensus 178 ~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~Lk 215 (335)
.+...+..+......+......++.++.....+++.|+
T Consensus 96 ~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ 133 (314)
T PF04111_consen 96 EYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLR 133 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444555555555555555555555443
No 180
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=72.34 E-value=1.4e+02 Score=31.94 Aligned_cols=43 Identities=23% Similarity=0.271 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDW 146 (335)
Q Consensus 104 LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~ 146 (335)
-.+.+.+++++|.+++..+..+.+.-+.+...+.++..+....
T Consensus 326 ~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~ 368 (594)
T PF05667_consen 326 QEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEK 368 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777777777777777777777776666655543
No 181
>PLN02829 Probable galacturonosyltransferase
Probab=72.25 E-value=20 Score=38.30 Aligned_cols=106 Identities=17% Similarity=0.157 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Q 019853 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALK 180 (335)
Q Consensus 101 e~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~le 180 (335)
+.+-|-.++.|+++|..||.-+ .+|..+.-.+-..++...+.+.+.-.-.|-. +-||=..+..+.+..+.-+...+
T Consensus 178 ~~~~d~~v~~lkDql~~AkaY~--~iak~~~~~~l~~el~~~i~e~~r~l~~a~~--d~~lp~~~~~~~~~m~~~i~~ak 253 (639)
T PLN02829 178 TVMPDARVRQLRDQLIKAKVYL--SLPATKANPHFTRELRLRIKEVQRVLGDASK--DSDLPKNANEKLKAMEQTLAKGK 253 (639)
T ss_pred ccCchHHHHHHHHHHHHHHHHH--HHhccCCcHHHHHHHHHHHHHHHHHHhhccC--CCCCChhHHHHHHHHHHHHHHHH
Confidence 4678899999999999999874 6666666666677777777777555544444 67788888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 181 AQLDQQKNVVNNLVSNTRLLESKIQEARSK 210 (335)
Q Consensus 181 ~qle~~~~~v~~Lk~~l~~Le~ki~e~k~k 210 (335)
.........+.+|+.-+..+|.++.-.+.+
T Consensus 254 ~~~~d~~~~~~KLr~~l~~~Ee~~~~~~~q 283 (639)
T PLN02829 254 QMQDDCSIVVKKLRAMLHSAEEQLRVHKKQ 283 (639)
T ss_pred hcccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887778888888888888888777665443
No 182
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=72.17 E-value=94 Score=29.77 Aligned_cols=19 Identities=16% Similarity=-0.136 Sum_probs=9.6
Q ss_pred ccccCccceeeeecccccc
Q 019853 40 SFFNGGVGALKVTRLRIAP 58 (335)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~ 58 (335)
++|+|-+..+-|..-...+
T Consensus 21 ~~~~G~V~~i~V~eG~~V~ 39 (327)
T TIGR02971 21 SGGTDRIKKLLVAEGDRVQ 39 (327)
T ss_pred CCCCcEEEEEEccCCCEec
Confidence 4444556666655444333
No 183
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.11 E-value=67 Score=30.93 Aligned_cols=14 Identities=29% Similarity=0.546 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHH
Q 019853 210 KKDTLKARAQSAKT 223 (335)
Q Consensus 210 kr~~LkAr~~~AkA 223 (335)
+.+.|+.|+++...
T Consensus 99 r~~~l~~raRAmq~ 112 (265)
T COG3883 99 RQELLKKRARAMQV 112 (265)
T ss_pred HHHHHHHHHHHHHH
Confidence 44556666666543
No 184
>PRK04406 hypothetical protein; Provisional
Probab=72.03 E-value=32 Score=26.71 Aligned_cols=49 Identities=4% Similarity=0.077 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 167 KRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (335)
Q Consensus 167 ~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~Lk 215 (335)
.|...+|.++.-.+..++.+...+......+..|+.++..+..+...+.
T Consensus 11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 11 ERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3555666666666666666666666666666666666666665555443
No 185
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=71.93 E-value=80 Score=28.85 Aligned_cols=112 Identities=17% Similarity=0.240 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHH
Q 019853 82 LARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDL 161 (335)
Q Consensus 82 l~~lira~in~~ldk~EDPe~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdL 161 (335)
+-.-+...-..+|+++||++.-|-|.|.-+.+++.-++..+-......+.+++++...+.++.+..+.... |.+= .
T Consensus 37 ~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~-L~~L---~ 112 (194)
T PF15619_consen 37 TLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKH-LKKL---S 112 (194)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH---H
Confidence 33444555667899999999999999999999999999999999999999999999999988876666553 2220 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 162 AREALKRRKSYADNANALKAQLDQQKNVVNNLVSNT 197 (335)
Q Consensus 162 AreAL~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l 197 (335)
.-.-|.+...+..++..++..++.....+..|..++
T Consensus 113 ~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~l 148 (194)
T PF15619_consen 113 EDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQL 148 (194)
T ss_pred HcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001122233344444444444444444444444433
No 186
>PRK02793 phi X174 lysis protein; Provisional
Probab=71.80 E-value=40 Score=25.87 Aligned_cols=49 Identities=8% Similarity=0.039 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 167 KRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (335)
Q Consensus 167 ~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~Lk 215 (335)
.|...+|.++.-.+..++.+...+.+....+..|+.++..+..+...+.
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4666777777777777777777777777777777777777766666553
No 187
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=71.74 E-value=47 Score=34.53 Aligned_cols=100 Identities=14% Similarity=0.157 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 111 MNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVV 190 (335)
Q Consensus 111 me~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~le~qle~~~~~v 190 (335)
..+.+.+++..+..+......++.+++.++..+.-|+.....+...+.+++ ..-...+..+.+.++.+..+.
T Consensus 69 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~ 140 (525)
T TIGR02231 69 DPERLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSA--------KRNEPDLKEWFQAFDFNGSEI 140 (525)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccc--------ccCCCCHHHHHHHHHHHHHHH
Confidence 344455555555555544444555444444444444333322211111111 001123445555555566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 191 NNLVSNTRLLESKIQEARSKKDTLKARA 218 (335)
Q Consensus 191 ~~Lk~~l~~Le~ki~e~k~kr~~LkAr~ 218 (335)
..+...+..++.++++++.++..|..+.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~l~~l~~~l 168 (525)
T TIGR02231 141 ERLLTEDREAERRIRELEKQLSELQNEL 168 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666666554443
No 188
>PLN02742 Probable galacturonosyltransferase
Probab=71.48 E-value=40 Score=35.55 Aligned_cols=105 Identities=12% Similarity=0.048 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQL 183 (335)
Q Consensus 104 LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~le~ql 183 (335)
.|-.++.|+++|.-||.-+ .+|..+.-.+-..++...|.+.+.-.-.|..-++.=.-..+..+.+..+.-+..-+...
T Consensus 72 ~~~~~~~l~dql~~Ak~y~--~ia~~~~~~~l~~el~~~i~e~~~~l~~a~~d~~~~~~~~~~~~~~~m~~~i~~ak~~~ 149 (534)
T PLN02742 72 ATSFSRQLADQITLAKAYV--VIAKEHNNLQLAWELSAQIRNCQLLLSKAATRGEPITVEEAEPIIRDLAALIYQAQDLH 149 (534)
T ss_pred hHHHHHHHHHHHHHHHHHH--HHhccCCcHHHHHHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHhcc
Confidence 3566778999999999876 67766666666677777777776655555443332113677777777777777777766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 184 DQQKNVVNNLVSNTRLLESKIQEARSK 210 (335)
Q Consensus 184 e~~~~~v~~Lk~~l~~Le~ki~e~k~k 210 (335)
......+.+|+..+..+|.++.-.+.+
T Consensus 150 ~d~~~~~~klr~~l~~~e~~~~~~~~q 176 (534)
T PLN02742 150 YDSATTIMTLKAHIQALEERANAATVQ 176 (534)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777778888877777766655443
No 189
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=71.46 E-value=1.3e+02 Score=30.96 Aligned_cols=49 Identities=10% Similarity=0.173 Sum_probs=27.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 99 DPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWY 147 (335)
Q Consensus 99 DPe~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e 147 (335)
|-..-|+..|-+.+.++..++..+.+.....+.++++++.....+..++
T Consensus 59 ~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~ 107 (420)
T COG4942 59 DQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALE 107 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHH
Confidence 3344555555555555555555555555555555665555555444443
No 190
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=71.43 E-value=84 Score=28.87 Aligned_cols=44 Identities=18% Similarity=0.296 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 172 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (335)
Q Consensus 172 ~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~Lk 215 (335)
.+.....|...++.+...-.++......++.++.++-.+...|+
T Consensus 93 lEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq 136 (193)
T PF14662_consen 93 LEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQ 136 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHH
Confidence 33344444444444444444444444444444444444444443
No 191
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=71.38 E-value=1.3 Score=49.05 Aligned_cols=138 Identities=17% Similarity=0.301 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHhhccCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 77 NLFDRLARVVKSYANAILSSFEDP---EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA 153 (335)
Q Consensus 77 sif~Rl~~lira~in~~ldk~EDP---e~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~A 153 (335)
+-+.|....+.+.+.++=..+++- -..|...++.++.++..++..+-.-......+++++..+..++..|..+...-
T Consensus 232 ~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e 311 (859)
T PF01576_consen 232 SQLQREKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEE 311 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 445666666666666666666543 35666777788888888888887777777888888888888888888887765
Q ss_pred HhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 154 LQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARA 218 (335)
Q Consensus 154 L~~G~EdLAreAL~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~ 218 (335)
....-+. .=.-+..+...+..++.+++.....+..|......|...+.++...++...+..
T Consensus 312 ~~~~~Ee----lEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~ 372 (859)
T PF01576_consen 312 AEQRTEE----LEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAA 372 (859)
T ss_dssp -----------------------------------------------------------------
T ss_pred hhhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443322 122345556677777777777777777777777777777777776666554443
No 192
>PRK00736 hypothetical protein; Provisional
Probab=71.21 E-value=36 Score=25.80 Aligned_cols=47 Identities=6% Similarity=0.089 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 168 RRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 214 (335)
Q Consensus 168 rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~L 214 (335)
|...+|.++.-.+..++.+...+.+-...|..|+.++..+..+...+
T Consensus 6 Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00736 6 RLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSL 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555555555555555555555555555555555443
No 193
>PRK02119 hypothetical protein; Provisional
Probab=70.94 E-value=35 Score=26.28 Aligned_cols=48 Identities=10% Similarity=0.133 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 171 SYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARA 218 (335)
Q Consensus 171 ~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~ 218 (335)
..++.+..|+..+.-++..++.|..-+-+....|..++.+...|.-|.
T Consensus 6 ~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl 53 (73)
T PRK02119 6 NLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKL 53 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666777777777766666666666666666665444
No 194
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=70.88 E-value=42 Score=25.14 Aligned_cols=46 Identities=13% Similarity=0.216 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 170 KSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (335)
Q Consensus 170 ~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~Lk 215 (335)
+.+...+...+...-.++..+.........|..+|..++.+.+.+.
T Consensus 14 Q~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 14 QAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444444444444444444444445555555555555444443
No 195
>PRK02119 hypothetical protein; Provisional
Probab=70.87 E-value=46 Score=25.63 Aligned_cols=48 Identities=6% Similarity=0.022 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 167 KRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 214 (335)
Q Consensus 167 ~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~L 214 (335)
.|...+|.++.-.+..++.+...+..-...+..|+.++..+..+...+
T Consensus 9 ~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~ 56 (73)
T PRK02119 9 NRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDM 56 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 355666666666666666666666666666666666666666655554
No 196
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=70.83 E-value=86 Score=28.77 Aligned_cols=106 Identities=14% Similarity=0.187 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHhhccCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 78 LFDRLARVVKSYANAILSSFEDPE---KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLAL 154 (335)
Q Consensus 78 if~Rl~~lira~in~~ldk~EDPe---~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL 154 (335)
+|.+|..++..+-+.+.+.+++-+ .-.+..+.+.+..|.++|.....++... -+.--...+....+.+..+..-+
T Consensus 74 ~~~pI~~vLe~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~~A--r~ea~~~~e~~~~~a~~ea~~~l 151 (204)
T PRK09174 74 ILPRIGGIIETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARAKAHSIAQAA--REAAKAKAEAERAAIEASLEKKL 151 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 155 QKGEEDLAREALKRRKSYADNANALKAQLDQ 185 (335)
Q Consensus 155 ~~G~EdLAreAL~rk~~~e~q~~~le~qle~ 185 (335)
...+.+++++--.-..++...+..+-..+.+
T Consensus 152 ~~Ae~~I~~ek~~A~~el~~~a~e~A~~I~~ 182 (204)
T PRK09174 152 KEAEARIAAIKAKAMADVGSIAEETAAAIVE 182 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 197
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=70.57 E-value=1e+02 Score=29.58 Aligned_cols=44 Identities=18% Similarity=0.263 Sum_probs=20.4
Q ss_pred CcccccCCCcccccCchHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHH
Q 019853 62 SHCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLE 110 (335)
Q Consensus 62 ~~~~~~~~~~~~~~Msif~Rl~~lira~in~~ldk~EDPe~~LdQ~Ire 110 (335)
..||...||. ..|-...+-|...-+..-.+-.-...+|.+++..
T Consensus 141 ~~~~~~~gg~-----~~~~~~~~~~~~~Y~~~p~Kg~ka~evL~~fl~~ 184 (297)
T PF02841_consen 141 QGCYSKPGGY-----QLFLKELDELEKEYEQEPGKGVKAEEVLQEFLQS 184 (297)
T ss_dssp CTTTSSTTHH-----HHHHHHHHHHHHHHHHSS---TTHHHHHHHHHHH
T ss_pred cCCCCCCCCH-----HHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHH
Confidence 3456666664 2344444433333333323323335677777666
No 198
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=70.32 E-value=63 Score=26.95 Aligned_cols=54 Identities=15% Similarity=0.239 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 166 LKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQ 219 (335)
Q Consensus 166 L~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~~ 219 (335)
...+..++..+..|+++.+...+.+..|+.++..+...++..|.-+..|..|..
T Consensus 36 ~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak~~l~~r~~ 89 (107)
T PF09304_consen 36 AKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQAKLELESRLL 89 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555677777777777777777777777777777777766665555554433
No 199
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=70.11 E-value=1.2e+02 Score=30.25 Aligned_cols=14 Identities=29% Similarity=0.366 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q 019853 160 DLAREALKRRKSYA 173 (335)
Q Consensus 160 dLAreAL~rk~~~e 173 (335)
++|+.-+.|...+-
T Consensus 137 ~~a~~~~~R~~~L~ 150 (390)
T PRK15136 137 AQAQSDLNRRVPLG 150 (390)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 200
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=70.07 E-value=1.1e+02 Score=29.57 Aligned_cols=58 Identities=24% Similarity=0.280 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcH
Q 019853 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEE 159 (335)
Q Consensus 101 e~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~E 159 (335)
++.|...|..+.+++.+.++.+..+-+.+..|+.+++.-..+.+.-+.|-.. |+.=+.
T Consensus 164 E~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~s-Lq~vRP 221 (267)
T PF10234_consen 164 EKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQS-LQSVRP 221 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCh
Confidence 5888899999999999999999999999999999999999888887777554 554443
No 201
>PRK04325 hypothetical protein; Provisional
Probab=69.58 E-value=39 Score=26.05 Aligned_cols=47 Identities=11% Similarity=0.058 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 168 RRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 214 (335)
Q Consensus 168 rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~L 214 (335)
|...+|.++.-.+..++.+...+.+-...+..|+.++..+..+...+
T Consensus 10 Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~ 56 (74)
T PRK04325 10 RITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDA 56 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555555555555566655555555555555555555555555444
No 202
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=69.36 E-value=1.7e+02 Score=33.28 Aligned_cols=50 Identities=16% Similarity=0.228 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 165 ALKRRKSYADNANALKAQL--DQQKNVVNNLVSNTRLLESKIQEARSKKDTL 214 (335)
Q Consensus 165 AL~rk~~~e~q~~~le~ql--e~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~L 214 (335)
.++.|.-+++++..|..+- ..++.++-+++.++..|+.....-+.+...|
T Consensus 276 LleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL 327 (1195)
T KOG4643|consen 276 LLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEEL 327 (1195)
T ss_pred HHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 4555666666666665555 3344444455544444444444444444443
No 203
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=69.34 E-value=1.5e+02 Score=31.06 Aligned_cols=25 Identities=8% Similarity=0.171 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 103 ILEQAVLEMNDDLVKMRQATAQVLA 127 (335)
Q Consensus 103 ~LdQ~Ireme~~L~kar~~lA~v~A 127 (335)
.++-.|..+...+..+...++.+..
T Consensus 248 ~~~~~i~~a~~~i~~L~~~l~~l~~ 272 (582)
T PF09731_consen 248 DLNSLIAHAKERIDALQKELAELKE 272 (582)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566666666665555444
No 204
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=69.29 E-value=62 Score=26.49 Aligned_cols=100 Identities=20% Similarity=0.247 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 108 VLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYR---KAQLALQKGEEDLAREALKRRKSYADNANALKAQLD 184 (335)
Q Consensus 108 Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~---rA~~AL~~G~EdLAreAL~rk~~~e~q~~~le~qle 184 (335)
+.+.-..+...+..+..+......++.++.++..-.+.+.. .+..-..=|. .+.+ ...++-...++..++
T Consensus 5 ~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~------vlv~-~~~~e~~~~l~~r~e 77 (110)
T TIGR02338 5 VQNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGN------LLVK-TDKEEAIQELKEKKE 77 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhch------hhhe-ecHHHHHHHHHHHHH
Confidence 44555566667777777777777777777776655555443 1222122222 3333 335555566666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 185 QQKNVVNNLVSNTRLLESKIQEARSKKDTL 214 (335)
Q Consensus 185 ~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~L 214 (335)
..+..+..+..++..++.++.+++.+...+
T Consensus 78 ~ie~~i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 78 TLELRVKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666666665544
No 205
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.27 E-value=1.6e+02 Score=32.72 Aligned_cols=148 Identities=16% Similarity=0.198 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 112 NDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA-LQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVV 190 (335)
Q Consensus 112 e~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~A-L~~G~EdLAreAL~rk~~~e~q~~~le~qle~~~~~v 190 (335)
.+.+..++...-.....+..+..++....+.+..|...++.| +.+|-+--+-.--+...+.-........++.++....
T Consensus 736 ~eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~~~~a~~~~~~~~~~~~~qeqv~El~~~l~e~~~~l~~~q~e~ 815 (970)
T KOG0946|consen 736 NEELNAALSENKKLENDQELLTKELNKKNADIESFKATQRSAELSQGSLNDNLGDQEQVIELLKNLSEESTRLQELQSEL 815 (970)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchhhhhhhhHHHHHHHHHhhhhhhhHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCC--CCcHHHHHHHHHHHHHhHHHHHHH
Q 019853 191 NNLVSNTRLLESKIQEARSKKDTLKAR-AQSAKTATKVSEMLGNVN--TSSALSAFEKMEEKVLTMESQADS 259 (335)
Q Consensus 191 ~~Lk~~l~~Le~ki~e~k~kr~~LkAr-~~~AkAq~~v~~~~~~~~--~~~a~~~feRmEeki~~~EA~AeA 259 (335)
.++++++..+-.++...-.-++.+... .+-|.....+..-++.+. ......-+...-|++...++++++
T Consensus 816 ~~~keq~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~~~nli~~ltEk~~sl~~qads 887 (970)
T KOG0946|consen 816 TQLKEQIQTLLERTSAAADSLESMGSTEKNLANELKLIEQKLSNLQEKIKFGNNLIKELTEKISSLEAQADS 887 (970)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHhhccccchhhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHhhcc
No 206
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=69.10 E-value=91 Score=28.36 Aligned_cols=119 Identities=13% Similarity=0.073 Sum_probs=57.6
Q ss_pred hccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CcHHHHHHHHHHHH
Q 019853 95 SSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQK----GEEDLAREALKRRK 170 (335)
Q Consensus 95 dk~EDPe~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~----G~EdLAreAL~rk~ 170 (335)
++..||...+...+-.++..+.++-......-.=.+.+-.-++.+-.--.-..+....=|.. -++|+|+-| ....
T Consensus 4 qK~fDP~qaWKdmy~aTE~~wak~~~q~m~TEEFSa~IG~vLd~yL~yQKafnE~MekYLe~lNlPSr~DiarvA-~lvi 82 (189)
T TIGR02132 4 QKVFDPFQAWKDAYDKTESFWGKAIGDNIKREEFSALMGNVLDLNLFYQKALNDTTGNYLEQVNVPTKEDIANVA-SLVI 82 (189)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH-HHHH
Confidence 35568887777777777777776654432111111111111111111001111111222333 347777655 5666
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 171 SYADNANALKAQLDQQKNVV-------NNLVSNTRLLESKIQEARSKKDTL 214 (335)
Q Consensus 171 ~~e~q~~~le~qle~~~~~v-------~~Lk~~l~~Le~ki~e~k~kr~~L 214 (335)
.+|..+..++.+++..-... -.++..+..++.+|..+..|.+.+
T Consensus 83 nlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~ 133 (189)
T TIGR02132 83 NLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKI 133 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHH
Confidence 77777777777766632222 244455555555555555555443
No 207
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=68.63 E-value=2.8e+02 Score=33.76 Aligned_cols=48 Identities=21% Similarity=0.318 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019853 109 LEMNDDLVKMRQAT-------AQVLASQKRLENKCKAAEQASEDWYRKAQLALQK 156 (335)
Q Consensus 109 reme~~L~kar~~l-------A~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~ 156 (335)
++|.+.+.+++..+ ...-+.-......+.-++....+|..|...-+.+
T Consensus 1246 qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k 1300 (1822)
T KOG4674|consen 1246 QELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEK 1300 (1822)
T ss_pred HHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555554444 4444444445555666788888999998887776
No 208
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=68.45 E-value=1.8e+02 Score=31.61 Aligned_cols=56 Identities=13% Similarity=0.089 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCc----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 130 KRLENKCKAAEQASEDWYRKAQLALQKGE----EDLAREALKRRKSYADNANALKAQLDQ 185 (335)
Q Consensus 130 k~le~kl~~~~~~~~~~e~rA~~AL~~G~----EdLAreAL~rk~~~e~q~~~le~qle~ 185 (335)
.-++.++.+++.+....+.+...-.++.+ +.-|...+.+..+++.++..++.+...
T Consensus 270 ~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l~~~~~~ 329 (726)
T PRK09841 270 EFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFREAE 329 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555544444443333321 112344555555555555555444433
No 209
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=68.13 E-value=2.5e+02 Score=33.08 Aligned_cols=43 Identities=16% Similarity=0.234 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 174 DNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKA 216 (335)
Q Consensus 174 ~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkA 216 (335)
+++..+....+.....+..-+..+.+++.++.+...+......
T Consensus 340 ~ql~~~~~~a~~~~~~~~~a~~~~e~~~~~~~~~~~r~~~~~~ 382 (1353)
T TIGR02680 340 ADAEALQAAAADARQAIREAESRLEEERRRLDEEAGRLDDAER 382 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444433
No 210
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=68.09 E-value=61 Score=28.98 Aligned_cols=33 Identities=18% Similarity=0.366 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 170 KSYADNANALKAQLDQQKNVVNNLVSNTRLLES 202 (335)
Q Consensus 170 ~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ 202 (335)
.....+++.++.+++..+..++.|+.+...+..
T Consensus 157 ~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334555556666666655555555555555543
No 211
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=67.99 E-value=1.4e+02 Score=29.95 Aligned_cols=109 Identities=17% Similarity=0.189 Sum_probs=62.1
Q ss_pred ccccccccccccCccceeeeecccc-ccCCCCcccccCCCcccccCchHHHHHHHHHHHHHHHhhccCCH--HHHHH---
Q 019853 32 MVKKPLTTSFFNGGVGALKVTRLRI-APSSRSHCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDP--EKILE--- 105 (335)
Q Consensus 32 ~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~Msif~Rl~~lira~in~~ldk~EDP--e~~Ld--- 105 (335)
..++|+.++.-.||+-.+..-...- ..++.. |. |.++ |++.++++++.--+- ++.++
T Consensus 169 ~~~~p~p~p~~~~gas~~~~~~~d~~~~yp~n----~~-~~~~------------irasvisa~~eklR~r~eeeme~~~ 231 (365)
T KOG2391|consen 169 AYKPPLPPPPPPGGASALPYMTDDNAEPYPPN----AS-GKLV------------IRASVISAVREKLRRRREEEMERLQ 231 (365)
T ss_pred CcCCCCCCCCCCCccccCcccCCCCCCcCCCC----cc-cccc------------hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6678899999999977443322222 122211 21 2223 444444433322111 12222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019853 106 QAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKG 157 (335)
Q Consensus 106 Q~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G 157 (335)
-.+.+++.--++++.....+.+....||+++..++..++=+..+.+.|+.+-
T Consensus 232 aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~ 283 (365)
T KOG2391|consen 232 AEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKA 283 (365)
T ss_pred HHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence 2233444444555566667777888889999999998888888888876653
No 212
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=67.89 E-value=1.3e+02 Score=29.79 Aligned_cols=118 Identities=19% Similarity=0.203 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKA 181 (335)
Q Consensus 102 ~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~le~ 181 (335)
.-|-+.+.+.++........ -..+.+++.+++..+.-+..+...--..+..--++....++ +.+=.
T Consensus 68 ~~La~lL~~sre~Nk~L~~E-------v~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~er-------e~lV~ 133 (319)
T PF09789_consen 68 KNLAQLLSESREQNKKLKEE-------VEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHER-------EDLVE 133 (319)
T ss_pred hhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHH-------HHHHH
Confidence 44555555555555554444 34455555555555555544333321111122234443333 34444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 019853 182 QLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVN 235 (335)
Q Consensus 182 qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~~~AkAq~~v~~~~~~~~ 235 (335)
+++.+..+..+|..+++.+-...+++..+++.++-... +....++..++|-.
T Consensus 134 qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~--RLN~ELn~~L~g~~ 185 (319)
T PF09789_consen 134 QLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAH--RLNHELNYILNGDE 185 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhCCCC
Confidence 55666666777777777777888888888888775443 34566777777643
No 213
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=67.51 E-value=1.2e+02 Score=29.00 Aligned_cols=48 Identities=13% Similarity=0.142 Sum_probs=23.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 99 DPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDW 146 (335)
Q Consensus 99 DPe~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~ 146 (335)
+++......|.++..........+..+...-+.+..++..+..++..+
T Consensus 188 e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l 235 (312)
T PF00038_consen 188 ELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESL 235 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhcc
Confidence 344445555555555555555555544444444455554444444443
No 214
>PRK11281 hypothetical protein; Provisional
Probab=67.21 E-value=2.4e+02 Score=32.59 Aligned_cols=41 Identities=20% Similarity=0.203 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQA 142 (335)
Q Consensus 102 ~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~ 142 (335)
..|++.+.+.++++.+.+..++..-+.--.++.+.++++..
T Consensus 124 ~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~ 164 (1113)
T PRK11281 124 RQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAA 164 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHH
Confidence 55888888888888888888777755555555544444444
No 215
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=67.16 E-value=1.2e+02 Score=28.99 Aligned_cols=11 Identities=9% Similarity=0.283 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 019853 110 EMNDDLVKMRQ 120 (335)
Q Consensus 110 eme~~L~kar~ 120 (335)
.++.++..++.
T Consensus 84 ~a~a~l~~~~~ 94 (334)
T TIGR00998 84 KAEANLAALVR 94 (334)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 216
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=67.08 E-value=1.8e+02 Score=30.90 Aligned_cols=59 Identities=24% Similarity=0.395 Sum_probs=37.3
Q ss_pred CCCcHHHHHHHHHHHHHhHHHHHHHhhccc---CCChhHHHhhhc--------------cCCHHHHHHHHHHHcCC
Q 019853 235 NTSSALSAFEKMEEKVLTMESQADSLNQLT---TDDLEGKFALLE--------------TSSVDDDLANLKKELSG 293 (335)
Q Consensus 235 ~~~~a~~~feRmEeki~~~EA~AeA~~eL~---~~~Le~k~a~le--------------~~~vddeLa~LKa~l~~ 293 (335)
+.-.|..-++..++.+..+++..+-+-.|- ..++-++|.+|. .-.+|.+|.+|+.++..
T Consensus 191 d~ieA~evl~~~ee~~~~L~~~~e~IP~L~~e~~~~lP~ql~~Lk~Gyr~m~~~gY~l~~~~id~~~~~L~~~l~~ 266 (570)
T COG4477 191 DYIEAREVLEEAEEHMIALRSIMERIPSLLAELQTELPGQLQDLKAGYRDMKEEGYHLEHVNIDSRLERLKEQLVE 266 (570)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHccCCcccccHHHHHHHHHHHHHH
Confidence 445667777777777777777666444331 234444444433 12689999999998854
No 217
>PRK00846 hypothetical protein; Provisional
Probab=67.03 E-value=48 Score=25.97 Aligned_cols=49 Identities=6% Similarity=-0.007 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 167 KRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (335)
Q Consensus 167 ~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~Lk 215 (335)
.|...+|..+.-.+..++.+...+......+..|+.++.-+..+...+.
T Consensus 13 ~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 13 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555556666666666666666666666666666666666655555544
No 218
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=66.57 E-value=2.1e+02 Score=31.67 Aligned_cols=19 Identities=16% Similarity=0.186 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHhhccCCH
Q 019853 82 LARVVKSYANAILSSFEDP 100 (335)
Q Consensus 82 l~~lira~in~~ldk~EDP 100 (335)
...++-+-+..++-..+|+
T Consensus 338 t~KYLLgELkaLVaeq~Ds 356 (861)
T PF15254_consen 338 TLKYLLGELKALVAEQEDS 356 (861)
T ss_pred HHHHHHHHHHHHHhccchH
Confidence 3345566666666665554
No 219
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=66.39 E-value=1.3e+02 Score=29.63 Aligned_cols=75 Identities=20% Similarity=0.240 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Q 019853 100 PEKILEQAVLEMNDDLVKMRQATAQV----LASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYAD 174 (335)
Q Consensus 100 Pe~~LdQ~Ireme~~L~kar~~lA~v----~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~ 174 (335)
--..|...+.|....+.+++.-++.. +.....-+.++..+...|.+.-++|...=..|+-+-|..++.+...+..
T Consensus 84 ~~~~l~~~v~d~~rri~~~kerL~e~~ee~~~e~~~k~~~v~~l~e~I~~~l~~~E~LG~eG~Veeaq~~~~e~E~lk~ 162 (319)
T KOG0796|consen 84 ALEILERFVADVDRRIEKAKERLAETVEERSEEAARKAEKVHELEEKIGKLLEKAEELGEEGNVEEAQKAMKEVEELKA 162 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Confidence 34667777777777777776666655 2222222678899999999999999999999999999888765554443
No 220
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=66.35 E-value=2.5 Score=46.92 Aligned_cols=143 Identities=17% Similarity=0.281 Sum_probs=0.0
Q ss_pred cCchHHHHHHHHHHHHHHHhhccCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 75 RMNLFDRLARVVKSYANAILSSFED---PEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQ 151 (335)
Q Consensus 75 ~Msif~Rl~~lira~in~~ldk~ED---Pe~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~ 151 (335)
.+.+..|=...+.+-+.++-...+. -.+.+++.+.++.+.+..+......+....++++.++..++..+++-..-+.
T Consensus 603 ~~~~~e~r~~~l~~elee~~~~~~~a~r~rk~aE~el~e~~~~~~~l~~~~~~l~~~kr~le~~i~~l~~eleE~~~~~~ 682 (859)
T PF01576_consen 603 QLAVSERRLRALQAELEELREALEQAERARKQAESELDELQERLNELTSQNSSLSEEKRKLEAEIQQLEEELEEEQSEAE 682 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555444433333 3577888888888888888777777777888888888777777766666665
Q ss_pred HHHhcCcH----------HH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 019853 152 LALQKGEE----------DL------AREALKRRKSYADNANALKAQLDQQKNVVNN-LVSNTRLLESKIQEARSKKDTL 214 (335)
Q Consensus 152 ~AL~~G~E----------dL------AreAL~rk~~~e~q~~~le~qle~~~~~v~~-Lk~~l~~Le~ki~e~k~kr~~L 214 (335)
.|..+.+- +| ....-..+..++.++..|+..++.+...... -+..+..|+.+|.++..+++.=
T Consensus 683 ~~~ek~kka~~~~~~l~~eL~~Eq~~~~~le~~k~~LE~q~keLq~rl~e~E~~~~~~~k~~i~kLE~ri~eLE~~Le~E 762 (859)
T PF01576_consen 683 AAEEKAKKAQAQAAQLAEELRQEQDHNQHLEKEKKALERQVKELQARLEEAEQSALKGGKKQIAKLEARIRELEEELESE 762 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHhHHHHHHHHHHHHH
Confidence 55544431 11 1223345666777777777777777665543 3567778888888887777765
Q ss_pred HHH
Q 019853 215 KAR 217 (335)
Q Consensus 215 kAr 217 (335)
.-+
T Consensus 763 ~r~ 765 (859)
T PF01576_consen 763 QRR 765 (859)
T ss_dssp ---
T ss_pred HHH
Confidence 444
No 221
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=66.06 E-value=76 Score=26.34 Aligned_cols=99 Identities=16% Similarity=0.170 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 108 VLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQK 187 (335)
Q Consensus 108 Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~le~qle~~~ 187 (335)
+.=-+.....++..++.+.......+.++..+......+......-...|-. ......+..-+..+...+..+.
T Consensus 8 l~lr~~~ed~a~~~la~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~g~~------~~~l~~~~~f~~~l~~~i~~q~ 81 (141)
T TIGR02473 8 LDLREKEEEQAKLELAKAQAEFERLETQLQQLIKYREEYEQQALEKVGAGTS------ALELSNYQRFIRQLDQRIQQQQ 81 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556778888999999999999999999999999988877665666621 1122344555556666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 188 NVVNNLVSNTRLLESKIQEARSKKD 212 (335)
Q Consensus 188 ~~v~~Lk~~l~~Le~ki~e~k~kr~ 212 (335)
..+..++..+......+.+...++.
T Consensus 82 ~~l~~~~~~~e~~r~~l~~a~~~~k 106 (141)
T TIGR02473 82 QELALLQQEVEAKRERLLEARRELK 106 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666555555555544433
No 222
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=65.93 E-value=1.1e+02 Score=28.05 Aligned_cols=36 Identities=8% Similarity=0.103 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Q 019853 216 ARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVL 251 (335)
Q Consensus 216 Ar~~~AkAq~~v~~~~~~~~~~~a~~~feRmEeki~ 251 (335)
....+-.+.+..+.++..++..-..+..+++.+.+.
T Consensus 105 ~~~ev~~aLk~g~~aLK~~~k~~~idkVd~lmDei~ 140 (191)
T PTZ00446 105 LHKIAVNALSYAANTHKKLNNEINTQKVEKIIDTIQ 140 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 333344444444444444433332333333333333
No 223
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=65.82 E-value=1.1e+02 Score=27.99 Aligned_cols=33 Identities=18% Similarity=0.261 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 174 DNANALKAQLDQQKNVVNNLVSNTRLLESKIQE 206 (335)
Q Consensus 174 ~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e 206 (335)
.++.....-...+...+..|...+..|..+|.+
T Consensus 157 rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkE 189 (194)
T PF15619_consen 157 RQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKE 189 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444444444444444444433
No 224
>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase
Probab=65.76 E-value=38 Score=36.42 Aligned_cols=106 Identities=16% Similarity=0.152 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Q 019853 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALK 180 (335)
Q Consensus 101 e~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~le 180 (335)
+.+-|-.++.|+++|.-||.- -.+|..+.-.+-..++...+.+.+.-.-.|. .+.||=..++.+.+..+..+...+
T Consensus 192 ~~~~d~~vk~lkDQl~~AkaY--~~iak~~~~~~l~~eL~~~i~e~~r~ls~a~--~d~dlp~~~~~k~~~M~~~l~~ak 267 (657)
T PLN02910 192 SPNSDSILKLMRDQIIMAKAY--ANIAKSNNVTNLYVSLMKQFRENKRAIGEAT--SDAELHSSALDQAKAMGHVLSIAK 267 (657)
T ss_pred ccCcHHHHHHHHHHHHHHHHH--HHHhccCCcHHHHHHHHHHHHHHHHHHhhcc--cccccCchHHHHHHHHHHHHHHHH
Confidence 456788899999999998876 3445544445555566666666555444433 677888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 181 AQLDQQKNVVNNLVSNTRLLESKIQEARSK 210 (335)
Q Consensus 181 ~qle~~~~~v~~Lk~~l~~Le~ki~e~k~k 210 (335)
.........+.+|+.-+..+|.++...+.+
T Consensus 268 ~~~~d~~~~~~KLraml~~~Ee~~~~~k~q 297 (657)
T PLN02910 268 DQLYDCHTMARKLRAMLQSTERKVDALKKK 297 (657)
T ss_pred hcccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888777665544
No 225
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=65.51 E-value=76 Score=28.57 Aligned_cols=38 Identities=13% Similarity=0.248 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 110 EMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWY 147 (335)
Q Consensus 110 eme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e 147 (335)
+++..+.+.+..++.+.-.+-.+..++.....++.+.+
T Consensus 71 ~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~ 108 (194)
T PF08614_consen 71 SLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELE 108 (194)
T ss_dssp --------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccchhh
Confidence 33334444444444444444444555555544444443
No 226
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=65.33 E-value=73 Score=27.71 Aligned_cols=47 Identities=26% Similarity=0.282 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 019853 112 NDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGE 158 (335)
Q Consensus 112 e~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~ 158 (335)
+..+.+....+..-...-+.++........+..+...++.--+..++
T Consensus 47 q~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~~~vL~~~~ 93 (160)
T PF13094_consen 47 QEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKAHPVLQLDD 93 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcccc
Confidence 33333333333333334444444444444444444444444444443
No 227
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=65.28 E-value=2e+02 Score=30.98 Aligned_cols=30 Identities=13% Similarity=0.226 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 192 NLVSNTRLLESKIQEARSKKDTLKARAQSA 221 (335)
Q Consensus 192 ~Lk~~l~~Le~ki~e~k~kr~~LkAr~~~A 221 (335)
.+...+..|+.+|.+-+.+.++|+.+.+..
T Consensus 478 ~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l 507 (652)
T COG2433 478 ARDRRIERLEKELEEKKKRVEELERKLAEL 507 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444443
No 228
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=64.99 E-value=1.7e+02 Score=32.27 Aligned_cols=8 Identities=0% Similarity=0.264 Sum_probs=3.2
Q ss_pred hHHHHHHH
Q 019853 78 LFDRLARV 85 (335)
Q Consensus 78 if~Rl~~l 85 (335)
|..|-..+
T Consensus 498 ii~~A~~~ 505 (771)
T TIGR01069 498 IIEQAKTF 505 (771)
T ss_pred HHHHHHHH
Confidence 44444333
No 229
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=64.78 E-value=49 Score=26.55 Aligned_cols=49 Identities=16% Similarity=0.211 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Q 019853 190 VNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSS 238 (335)
Q Consensus 190 v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~~~AkAq~~v~~~~~~~~~~~ 238 (335)
+.+++....+|....+.++.++....+....++.+++-.+...+++.++
T Consensus 25 ~~ka~~~~~kL~~en~qlk~Ek~~~~~qvkn~~vrqknee~~~~~sr~~ 73 (87)
T PF10883_consen 25 VKKAKKQNAKLQKENEQLKTEKAVAETQVKNAKVRQKNEENTRRLSRDS 73 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccCCHHH
Confidence 3445555666666777777777777777777777777777666665444
No 230
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=64.27 E-value=1.3e+02 Score=28.30 Aligned_cols=65 Identities=12% Similarity=0.217 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHHHHHHhhccCC--HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 78 LFDRLARVVKSYANAILSSFED--PE-KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDW 146 (335)
Q Consensus 78 if~Rl~~lira~in~~ldk~ED--Pe-~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~ 146 (335)
||+++.+.|.+ +--++++ |. .-..+||.+++.+|.++-..+-.+...++.+-.-+.+.-.-+..+
T Consensus 2 ~~~~~~~~~~~----~~~k~~E~D~~F~~~k~yi~~Le~~Lk~l~k~~~~lv~~rkela~~~~efa~s~~~L 69 (234)
T cd07664 2 MVNKAADAVNK----MTIKMNESDAWFEEKQQQFENLDQQLRKLHASVESLVCHRKELSANTAAFAKSAAML 69 (234)
T ss_pred hhhHHHHHHHh----ccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666665544 3345554 42 667889999999999999999999888887776666655544433
No 231
>COG1561 Uncharacterized stress-induced protein [Function unknown]
Probab=64.06 E-value=1.5e+02 Score=28.97 Aligned_cols=72 Identities=22% Similarity=0.291 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHH
Q 019853 173 ADNANALKAQLDQQKNVVNNLVSNT-------RLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEK 245 (335)
Q Consensus 173 e~q~~~le~qle~~~~~v~~Lk~~l-------~~Le~ki~e~k~kr~~LkAr~~~AkAq~~v~~~~~~~~~~~a~~~feR 245 (335)
-.+-..+.++++.++.++.+.+.-+ ++|.-=.+++-++-+++-.....+.....+= ..-..++.
T Consensus 211 ~a~K~DI~EEldRL~sHv~~~~~iL~~~g~vGRkLDFl~QE~nREaNTl~SKS~~~~it~~~v---------ElK~~IEq 281 (290)
T COG1561 211 LAQKADIAEELDRLKSHVKEFRNILEKGGPVGRKLDFLMQEFNREANTLGSKSNAAEITAAVV---------ELKVLIEQ 281 (290)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHhHHHHhhhhccchHHHHHHHH---------HHHHHHHH
Confidence 3444455566666666666666666 4677778888888888877666554332211 22457888
Q ss_pred HHHHHHhH
Q 019853 246 MEEKVLTM 253 (335)
Q Consensus 246 mEeki~~~ 253 (335)
|+|+|...
T Consensus 282 mREQVQNi 289 (290)
T COG1561 282 MREQVQNI 289 (290)
T ss_pred HHHHHhcC
Confidence 88888654
No 232
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=63.56 E-value=31 Score=32.87 Aligned_cols=37 Identities=11% Similarity=0.273 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 178 ALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 214 (335)
Q Consensus 178 ~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~L 214 (335)
++..+++.++..|.+|+.+++.+..+|++++.+...+
T Consensus 58 ~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~ 94 (263)
T PRK10803 58 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQI 94 (263)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555554444443
No 233
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=63.38 E-value=2.1e+02 Score=30.49 Aligned_cols=65 Identities=18% Similarity=0.291 Sum_probs=39.8
Q ss_pred HHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcH
Q 019853 92 AILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEE 159 (335)
Q Consensus 92 ~~ldk~EDPe~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~E 159 (335)
.+||.+.+......+.++..=+...++++.+.......+...++.+-++-++++++. ..++-|++
T Consensus 143 ~lLD~f~~~~~~~~~~~~~~y~~w~~~~~~l~~~~~~~~e~~~~~d~L~fq~~Ele~---~~l~~gE~ 207 (557)
T COG0497 143 QLLDAFAGLEELAQEAYQEAYQAWKQARRELEDLQEKERERAQRADLLQFQLEELEE---LNLQPGED 207 (557)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCCchH
Confidence 355666554433334466666666777777777777777777777766666666553 34566654
No 234
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=63.31 E-value=32 Score=28.53 Aligned_cols=63 Identities=22% Similarity=0.348 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhcCcHHHHHH
Q 019853 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYR--------KAQLALQKGEEDLARE 164 (335)
Q Consensus 102 ~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~--------rA~~AL~~G~EdLAre 164 (335)
.-+++.|..+-+++..++..+..++-+-..|+..-..++..+.+.+. ....-+..|.+-||+-
T Consensus 11 ~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~~~~~~~~~~~~~~~~~g~~NL~~L 81 (107)
T PF06156_consen 11 DQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQEEEEKEEKKTKKKLGEGRDNLARL 81 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccchHHHHHHH
Confidence 34889999999999999999999999999999999999999888765 3333456677777753
No 235
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=63.01 E-value=86 Score=25.90 Aligned_cols=9 Identities=11% Similarity=-0.045 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 019853 131 RLENKCKAA 139 (335)
Q Consensus 131 ~le~kl~~~ 139 (335)
.+...+.++
T Consensus 24 ~l~~~i~e~ 32 (126)
T TIGR00293 24 ALRALIAEL 32 (126)
T ss_pred HHHHHHHHH
Confidence 333333333
No 236
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=62.71 E-value=37 Score=28.35 Aligned_cols=44 Identities=18% Similarity=0.195 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 103 ILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDW 146 (335)
Q Consensus 103 ~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~ 146 (335)
-|++.|..+-.++..++..++.++-+-..|+..-..++..+.+.
T Consensus 12 ~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 12 DLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 38889999999999999999999999999988888888888765
No 237
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=62.48 E-value=1.4e+02 Score=28.10 Aligned_cols=25 Identities=12% Similarity=0.262 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 200 LESKIQEARSKKDTLKARAQSAKTA 224 (335)
Q Consensus 200 Le~ki~e~k~kr~~LkAr~~~AkAq 224 (335)
+...|.++..++..|..-.+-|...
T Consensus 183 i~~~L~~~~~kL~Dl~~~l~eA~~~ 207 (264)
T PF06008_consen 183 IRDDLNDYNAKLQDLRDLLNEAQNK 207 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444333
No 238
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=62.44 E-value=2.5e+02 Score=30.94 Aligned_cols=138 Identities=14% Similarity=0.213 Sum_probs=85.4
Q ss_pred chHHHHHHHHH------HHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 77 NLFDRLARVVK------SYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKA 150 (335)
Q Consensus 77 sif~Rl~~lir------a~in~~ldk~EDPe~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA 150 (335)
+|.++|..-++ ...++.|.+++.-..-|.+.+++-++--...+..+-+..+..++-+..|...+..++.++.++
T Consensus 474 ~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~ 553 (961)
T KOG4673|consen 474 AIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQA 553 (961)
T ss_pred HHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 45555553332 334455556666666677777777776667777788888888888888888888899888887
Q ss_pred HHHHhcCcH----HH-----HH--HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 151 QLALQKGEE----DL-----AR--EALKRRKSYADNANALKAQLDQQK----NVVNNLVSNTRLLESKIQEARSKKDTLK 215 (335)
Q Consensus 151 ~~AL~~G~E----dL-----Ar--eAL~rk~~~e~q~~~le~qle~~~----~~v~~Lk~~l~~Le~ki~e~k~kr~~Lk 215 (335)
.. +++-.+ || ++ +|=++...|-.++..|...+...+ ...+.++..+..|..+++.+.++-+.|.
T Consensus 554 ~a-~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~ 632 (961)
T KOG4673|consen 554 LA-EQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCEELI 632 (961)
T ss_pred HH-HHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54 333222 22 11 233344455555665555554333 3345666677777777777766655543
No 239
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=62.30 E-value=2.6e+02 Score=31.11 Aligned_cols=52 Identities=21% Similarity=0.321 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 168 RRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQ 219 (335)
Q Consensus 168 rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~~ 219 (335)
.+..+...+..+...++.....+..|...|..|+..+.+-..+...++.|..
T Consensus 372 E~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~ 423 (775)
T PF10174_consen 372 EKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLS 423 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444455555555555555555555555555555554444444444444
No 240
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=62.01 E-value=1.3e+02 Score=27.78 Aligned_cols=59 Identities=22% Similarity=0.264 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 165 ALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKT 223 (335)
Q Consensus 165 AL~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~~~AkA 223 (335)
+.....+.+.....+-..|+.++..+..++.+-..|+..++++..+....-.|+.+-++
T Consensus 81 ~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~ 139 (207)
T PF05010_consen 81 AYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKA 139 (207)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445566667777777777777777777777777777777777766666666655433
No 241
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=61.89 E-value=2.5e+02 Score=30.88 Aligned_cols=100 Identities=21% Similarity=0.250 Sum_probs=69.7
Q ss_pred HHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 019853 92 AILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKS 171 (335)
Q Consensus 92 ~~ldk~EDPe~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~ 171 (335)
.+|..-.+-+.-+.+-|.+++.++..+|..+..+.++..++.....++....+.++.+-..- ++ =-+++=.|-..
T Consensus 20 ~Ll~esa~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~l----r~-e~ke~K~rE~r 94 (717)
T PF09730_consen 20 SLLQESASKEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRL----RE-EIKEYKFREAR 94 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH-HHHHHHHHHHH
Confidence 34455556678899999999999999999999999999999999998888877766554332 11 22444445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 172 YADNANALKAQLDQQKNVVNNLVSN 196 (335)
Q Consensus 172 ~e~q~~~le~qle~~~~~v~~Lk~~ 196 (335)
+-.....|+..--.+.++|..|+.+
T Consensus 95 ll~dyselEeENislQKqvs~Lk~s 119 (717)
T PF09730_consen 95 LLQDYSELEEENISLQKQVSVLKQS 119 (717)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 5555555555555555555555543
No 242
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=61.47 E-value=1e+02 Score=26.33 Aligned_cols=44 Identities=14% Similarity=0.223 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHHHHhhcc---CCHHHHHHHHHHHHHHHHHHHHHH
Q 019853 78 LFDRLARVVKSYANAILSSF---EDPEKILEQAVLEMNDDLVKMRQA 121 (335)
Q Consensus 78 if~Rl~~lira~in~~ldk~---EDPe~~LdQ~Ireme~~L~kar~~ 121 (335)
+|+.+..++..+-..+-+.+ +.-..-++....+.+..+.+++..
T Consensus 28 l~kPi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~Ar~e 74 (141)
T PRK08476 28 LYKPLLKFMDNRNASIKNDLEKVKTNSSDVSEIEHEIETILKNAREE 74 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555554433333332 323344445555555555555554
No 243
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=61.41 E-value=37 Score=24.99 Aligned_cols=35 Identities=6% Similarity=0.224 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 170 KSYADNANALKAQLDQQKNVVNNLVSNTRLLESKI 204 (335)
Q Consensus 170 ~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki 204 (335)
.++|+.+..++..+..++.+...++..+..++..+
T Consensus 3 ~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 3 DELENELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666665555555555555555555444
No 244
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=61.34 E-value=2.4e+02 Score=30.44 Aligned_cols=45 Identities=9% Similarity=0.210 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 100 PEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASE 144 (335)
Q Consensus 100 Pe~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~ 144 (335)
-..++.|.++.|.+.+..++...-..+.....|++.+..+..++.
T Consensus 23 e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~ 67 (617)
T PF15070_consen 23 ESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMA 67 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 356778888888888887777777666666666666666655544
No 245
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=61.06 E-value=2.7e+02 Score=30.88 Aligned_cols=117 Identities=11% Similarity=0.094 Sum_probs=81.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Q 019853 98 EDPEKILEQAVLEMNDDLVKMRQATAQVLAS-QKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNA 176 (335)
Q Consensus 98 EDPe~~LdQ~Ireme~~L~kar~~lA~v~A~-~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~ 176 (335)
++....++..++|+..=+......+-.++.. -..++.++...-..+. ...-.-+...-+.-+-.+|.........+
T Consensus 172 ~~~~~~~~~~~~Dl~~~l~~~~~qi~~l~~~ny~~~~~~v~~~L~~~~---~~lg~~i~~~l~~~~~~~L~~i~~l~~~~ 248 (806)
T PF05478_consen 172 DDTPNTVNSTLDDLRTFLNDTPQQIDHLLVQNYSELKDHVSSDLDNIG---SLLGGDIQDQLGSNVYPALDSILDLAQAM 248 (806)
T ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcc---chhhHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 3445778888888888888888877777666 4444444433322222 22233333333455667777777777788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 177 NALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 217 (335)
Q Consensus 177 ~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr 217 (335)
...+..+......+..|+....+|+..+.+.|+........
T Consensus 249 ~~~~~~L~~v~~~~~~L~~~~~qL~~~L~~vK~~L~~~l~~ 289 (806)
T PF05478_consen 249 QETKELLQNVNSSLKDLQEYQSQLRDGLRGVKRDLNNTLQD 289 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888899899999999999989998888888888877765
No 246
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=60.97 E-value=3.2e+02 Score=31.71 Aligned_cols=20 Identities=25% Similarity=0.503 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019853 104 LEQAVLEMNDDLVKMRQATA 123 (335)
Q Consensus 104 LdQ~Ireme~~L~kar~~lA 123 (335)
|+|.+.....++.+++..++
T Consensus 107 Leq~l~~~~~~L~~~q~~l~ 126 (1109)
T PRK10929 107 LEQEILQVSSQLLEKSRQAQ 126 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 247
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=60.64 E-value=9.3 Score=31.22 Aligned_cols=64 Identities=17% Similarity=0.288 Sum_probs=37.6
Q ss_pred hhHHHhhhcc--CCHHHHHHHHHHHcCCCCCCCCCCCCCCcCCCCCCCCCCC--hhhHHHHHHHHHHhhhc
Q 019853 268 LEGKFALLET--SSVDDDLANLKKELSGSSKKGELPPGRAAASSTNTAFPFR--DAEIEKELNELRQRAKD 334 (335)
Q Consensus 268 Le~k~a~le~--~~vddeLa~LKa~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 334 (335)
+-.++.+++. .....+|.++|-+.+..++.+.+|+|.++.+. ..|.. ---.+.++|+|..|+.+
T Consensus 20 lRRkl~ele~eN~~l~~EL~kyk~~~g~~d~~~~~~~g~~~~~~---~~~l~~eLk~a~~qi~~Ls~kv~e 87 (96)
T PF11365_consen 20 LRRKLSELEDENKQLTEELNKYKSKYGDLDSLAKLSEGGSPSGR---EAELQEELKLAREQINELSGKVME 87 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCccc---cHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3445555553 24778999999998766554555666543221 11221 11244688889888754
No 248
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=60.48 E-value=2.3e+02 Score=30.82 Aligned_cols=69 Identities=14% Similarity=0.190 Sum_probs=45.5
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 019853 90 ANAILSSFEDPEKILEQAVLEMNDDLVKMR-QATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGE 158 (335)
Q Consensus 90 in~~ldk~EDPe~~LdQ~Ireme~~L~kar-~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~ 158 (335)
++.+.|.+-.|..-.++.+.++++...++= +-+..+-..+.+|.+.+..++.++..+....-....-|.
T Consensus 23 L~~IW~~igE~~~e~d~~l~~le~e~~~~y~~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~ 92 (660)
T KOG4302|consen 23 LQKIWDEIGESETERDKKLLRLEQECLEIYKRKVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGE 92 (660)
T ss_pred HHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccc
Confidence 566666776665555555555555554443 334555556777888999999998888777666655555
No 249
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=60.04 E-value=1.5e+02 Score=27.83 Aligned_cols=140 Identities=14% Similarity=0.221 Sum_probs=74.6
Q ss_pred cccCchHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHH
Q 019853 73 NTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKC-------------KAA 139 (335)
Q Consensus 73 ~~~Msif~Rl~~lira~in~~ldk~EDPe~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl-------------~~~ 139 (335)
|.+-+|+.++..+-.. ..++.+++-..-|.+...+....|.+++..+..-...-..+..+| ..+
T Consensus 6 ~lP~~l~~~~~~v~~~---~g~~~l~~~l~~l~~~~~~~~~~L~e~~~~L~~E~~ed~~~r~~~g~~W~r~~S~~~~~~l 82 (296)
T PF13949_consen 6 GLPPSLLEKSEEVRSE---GGIEKLEESLQELPELSQEVRSILDEIEEMLDEEEREDEQLRAKYGERWTRPPSSELNASL 82 (296)
T ss_dssp S--HHHHHHHHHHHHT---TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTCGSS-HHHHCHHH
T ss_pred CCChHHHHHHHHHHhC---CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcHhhHHHH
Confidence 5555677777776644 234444444455666666677777777777766666666666665 356
Q ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHH
Q 019853 140 EQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVV-----------NNLVSNTRLLESKIQEAR 208 (335)
Q Consensus 140 ~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~le~qle~~~~~v-----------~~Lk~~l~~Le~ki~e~k 208 (335)
...+.++......|-..... .+..+ ......+..|..-.+.+...+ ...-..++.+-.++.+++
T Consensus 83 ~~~l~~~~~~L~~A~~sD~~--~~~~~---~~~~~~l~~L~~~~~~L~~~lp~~~~~~~~~~~~~i~~L~~ll~~l~~l~ 157 (296)
T PF13949_consen 83 RKELQKYREYLEQASESDSQ--LRSKL---ESIEENLELLSGPIEELEASLPSSSPSDSPQVSEVIRQLRELLNKLEELK 157 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHHH---HHHHHHHHHHTSSHHHHHHHS--B---SSGSS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHH--HHHHH---HHHHHHHHHHcCChhhHHhhCCCCCcccccchhHHHHHHHHHHHHHHHHH
Confidence 66666666666655444321 12222 222333333322222221111 233355566667777788
Q ss_pred HHHHHHHHHHHH
Q 019853 209 SKKDTLKARAQS 220 (335)
Q Consensus 209 ~kr~~LkAr~~~ 220 (335)
.+|..+......
T Consensus 158 ~eR~~~~~~lk~ 169 (296)
T PF13949_consen 158 KEREELLEQLKE 169 (296)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888877766665
No 250
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=60.03 E-value=3.1e+02 Score=31.35 Aligned_cols=18 Identities=28% Similarity=0.523 Sum_probs=12.6
Q ss_pred ccccccCCCCcccccCCC
Q 019853 53 RLRIAPSSRSHCYRQGGG 70 (335)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~ 70 (335)
+.++++....+|+.-.|-
T Consensus 630 a~~~ak~~~ln~ITl~GD 647 (1200)
T KOG0964|consen 630 ALRLAKKHELNCITLSGD 647 (1200)
T ss_pred HHHHHHhcCCCeEEeccc
Confidence 456777888888866553
No 251
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=59.96 E-value=1.1e+02 Score=26.15 Aligned_cols=31 Identities=23% Similarity=0.301 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 176 ANALKAQLDQQKNVVNNLVSNTRLLESKIQE 206 (335)
Q Consensus 176 ~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e 206 (335)
+..+...+++....+..+..-+..|+.||.+
T Consensus 91 V~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ 121 (126)
T PF07889_consen 91 VTEVREDVSQIGDDVDSVQQMVEGLEGKIDE 121 (126)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333
No 252
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=59.58 E-value=1.4e+02 Score=27.22 Aligned_cols=47 Identities=21% Similarity=0.180 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYR 148 (335)
Q Consensus 102 ~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~ 148 (335)
..|++.|+|.+..+.+...+|...-.+-.....-......++..+..
T Consensus 70 eqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~ 116 (188)
T PF05335_consen 70 EQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKA 116 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777777666666665555555555555555444433
No 253
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=59.52 E-value=2e+02 Score=29.02 Aligned_cols=97 Identities=16% Similarity=0.205 Sum_probs=42.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Q 019853 99 DPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANA 178 (335)
Q Consensus 99 DPe~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~ 178 (335)
.|.-+|+-.+..++.--..+-..++.+-.... +-+..+ -.+++..|+.|- .|++ |-- .+|...+.
T Consensus 86 spl~iL~~mM~qcKnmQe~~~s~LaAaE~khr---Kli~dL---E~dRe~haqdaa-eGDD-lt~-------~LEKEReq 150 (561)
T KOG1103|consen 86 SPLDILDKMMAQCKNMQENAASLLAAAEKKHR---KLIKDL---EADREAHAQDAA-EGDD-LTA-------HLEKEREQ 150 (561)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH---HHHHHHHhhhhh-ccch-HHH-------HHHHHHHH
Confidence 46667776655555444444333333222222 222222 233444444432 3433 322 33445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 179 LKAQLDQQKNVVNNLVSNTRLLESKIQEARSK 210 (335)
Q Consensus 179 le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~k 210 (335)
|++|++=...++.+.+-.-.+|+.++++-+.+
T Consensus 151 L~QQiEFe~~e~kK~E~~k~Kl~~qLeeEk~R 182 (561)
T KOG1103|consen 151 LQQQIEFEIEEKKKAEIAKDKLEMQLEEEKKR 182 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555544444444444444555555544433
No 254
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=59.37 E-value=1.3e+02 Score=26.58 Aligned_cols=82 Identities=18% Similarity=0.184 Sum_probs=40.1
Q ss_pred CCCcccccCchH-HHHHHHHHHHHHHHhhccC-CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 68 GGGALNTRMNLF-DRLARVVKSYANAILSSFE-DP-EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASE 144 (335)
Q Consensus 68 ~~~~~~~~Msif-~Rl~~lira~in~~ldk~E-DP-e~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~ 144 (335)
|||.+|...++| ..+.+++--. -+|..+- .| ..+|+.-=..+...|..+...... .+..+.+++..+.
T Consensus 11 ~~~~~~~~~~~~~~~iinflIl~--~lL~~fl~kpI~~~l~~R~~~I~~~l~~A~~~~~e-------a~~~~~~~~~~L~ 81 (174)
T PRK07352 11 AEGGFGLNLNLLETNLINLAIVI--GLLYYFGRGFLGKILEERREAILQALKEAEERLRQ-------AAQALAEAQQKLA 81 (174)
T ss_pred ccCCCCCchhHHHHHHHHHHHHH--HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 455557766655 3343332111 1233333 56 356665555555555555555444 4444455555555
Q ss_pred HHHHHHHHHHhcCc
Q 019853 145 DWYRKAQLALQKGE 158 (335)
Q Consensus 145 ~~e~rA~~AL~~G~ 158 (335)
++...|..-+...+
T Consensus 82 ~a~~ea~~ii~~a~ 95 (174)
T PRK07352 82 QAQQEAERIRADAK 95 (174)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555444433
No 255
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=59.14 E-value=2.9e+02 Score=30.64 Aligned_cols=35 Identities=29% Similarity=0.430 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 100 PEKILEQAVLEMNDDLVKMRQATAQVLASQKRLEN 134 (335)
Q Consensus 100 Pe~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~ 134 (335)
|..+++.+-.-+.++-.++...+..+...++.++.
T Consensus 500 p~~ii~~A~~~~~~~~~~~~~li~~l~~~~~~~e~ 534 (782)
T PRK00409 500 PENIIEEAKKLIGEDKEKLNELIASLEELERELEQ 534 (782)
T ss_pred CHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 44444443333333333333333333333333333
No 256
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=59.01 E-value=51 Score=31.34 Aligned_cols=46 Identities=7% Similarity=0.109 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 170 KSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (335)
Q Consensus 170 ~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~Lk 215 (335)
.++..+++.++.++..+..+++.+.-++.+++.+-.++...++.+.
T Consensus 57 ~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~ 102 (263)
T PRK10803 57 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLS 102 (263)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777777777777777777777777777654
No 257
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=58.79 E-value=3.2 Score=44.95 Aligned_cols=82 Identities=18% Similarity=0.287 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcH-HHHHHHHHHHHHHHHHHHHHHHH
Q 019853 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEE-DLAREALKRRKSYADNANALKAQ 182 (335)
Q Consensus 104 LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~E-dLAreAL~rk~~~e~q~~~le~q 182 (335)
+...++.+++.+.+...........-..++..+..++.+...|...|..|-.--|| |..|+-..+...++..++.|+.-
T Consensus 244 l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ve~YKkK 323 (713)
T PF05622_consen 244 LRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAEAREARALRDELDELREKADRADKLENEVEKYKKK 323 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666665555555555555677788888888899999999888776665 88899988888888888888877
Q ss_pred HHH
Q 019853 183 LDQ 185 (335)
Q Consensus 183 le~ 185 (335)
++.
T Consensus 324 Led 326 (713)
T PF05622_consen 324 LED 326 (713)
T ss_dssp ---
T ss_pred HHH
Confidence 665
No 258
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=58.78 E-value=1.9e+02 Score=28.58 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=12.2
Q ss_pred cHHHHHHHHHHHHHhHHHHHHH
Q 019853 238 SALSAFEKMEEKVLTMESQADS 259 (335)
Q Consensus 238 ~a~~~feRmEeki~~~EA~AeA 259 (335)
.....|+.+..++..++-...+
T Consensus 130 ~lV~qLEk~~~q~~qLe~d~qs 151 (319)
T PF09789_consen 130 DLVEQLEKLREQIEQLERDLQS 151 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666655544443
No 259
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=58.47 E-value=1.3e+02 Score=26.64 Aligned_cols=105 Identities=14% Similarity=0.118 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQL 183 (335)
Q Consensus 104 LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~le~ql 183 (335)
-.+..+.|+..|...+..+....+.-..-..+.......+..+..+...-...|.--. +.....+..-...+...+
T Consensus 13 r~R~~~rL~~~L~~~r~al~~~~a~~~~~~a~v~~~~~~l~~~~~ri~~m~~gg~~f~----i~~~~~~~~~r~~l~~~~ 88 (158)
T PF09486_consen 13 RRRRERRLRARLAAQRRALAAAEAELAEQQAEVEAARQRLRAHDARIDAMMTGGAPFS----IDEYLALRRYRDVLEERV 88 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCcc----HHHHHHHHHHHHHHHHHH
Confidence 3455667888888888888888888888788888888888777777776666555432 444555666666777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 184 DQQKNVVNNLVSNTRLLESKIQEARSKKD 212 (335)
Q Consensus 184 e~~~~~v~~Lk~~l~~Le~ki~e~k~kr~ 212 (335)
...+.++..+...+.....+|..+.+.+.
T Consensus 89 ~~~e~~~a~l~~~l~~~~~~ia~~~raIa 117 (158)
T PF09486_consen 89 RAAEAELAALRQALRAAEDEIAATRRAIA 117 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777666666666555444
No 260
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=58.25 E-value=1.7e+02 Score=27.87 Aligned_cols=6 Identities=33% Similarity=0.274 Sum_probs=2.3
Q ss_pred cceeee
Q 019853 46 VGALKV 51 (335)
Q Consensus 46 ~~~~~~ 51 (335)
+..+.|
T Consensus 53 V~~i~v 58 (334)
T TIGR00998 53 VIEVNV 58 (334)
T ss_pred EEEEEe
Confidence 443333
No 261
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=58.16 E-value=1.5e+02 Score=29.17 Aligned_cols=34 Identities=12% Similarity=0.215 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 161 LAREALKRRKSYADNANALKAQLDQQKNVVNNLV 194 (335)
Q Consensus 161 LAreAL~rk~~~e~q~~~le~qle~~~~~v~~Lk 194 (335)
.+.++-..+..++..+......++.+...+..|+
T Consensus 69 ~~~ei~~~~~~a~~~L~~a~P~L~~A~~al~~l~ 102 (344)
T PF12777_consen 69 QAKEIEEIKEEAEEELAEAEPALEEAQEALKSLD 102 (344)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCS-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3445556667777777777778777777777764
No 262
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=58.11 E-value=1e+02 Score=25.22 Aligned_cols=23 Identities=22% Similarity=0.266 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019853 194 VSNTRLLESKIQEARSKKDTLKA 216 (335)
Q Consensus 194 k~~l~~Le~ki~e~k~kr~~LkA 216 (335)
...+..|+-.|.+++-+...+.+
T Consensus 64 ~~dv~~L~l~l~el~G~~~~l~~ 86 (106)
T PF10805_consen 64 RDDVHDLQLELAELRGELKELSA 86 (106)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHH
Confidence 33333333334444333333333
No 263
>PRK11519 tyrosine kinase; Provisional
Probab=57.98 E-value=2.8e+02 Score=30.17 Aligned_cols=24 Identities=17% Similarity=0.153 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 162 AREALKRRKSYADNANALKAQLDQ 185 (335)
Q Consensus 162 AreAL~rk~~~e~q~~~le~qle~ 185 (335)
|+..+.....++.++..++.++.+
T Consensus 306 a~~~l~~~~~l~~ql~~l~~~~~~ 329 (719)
T PRK11519 306 AKAVLDSMVNIDAQLNELTFKEAE 329 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555444433
No 264
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=57.98 E-value=96 Score=26.95 Aligned_cols=52 Identities=15% Similarity=0.142 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 163 REALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 214 (335)
Q Consensus 163 reAL~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~L 214 (335)
-.++.++..++.++.....+++.++..+.+....+......|++++.....+
T Consensus 23 e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~ 74 (160)
T PF13094_consen 23 EQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKAL 74 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666776666666665555555555555555555555554444433
No 265
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=57.66 E-value=99 Score=24.85 Aligned_cols=32 Identities=6% Similarity=0.128 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019853 126 LASQKRLENKCKAAEQASEDWYRKAQLALQKG 157 (335)
Q Consensus 126 ~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G 157 (335)
-..++.+..+++.++.+..........+...|
T Consensus 35 d~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~ 66 (108)
T PF02403_consen 35 DQERRELQQELEELRAERNELSKEIGKLKKAG 66 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTT
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCc
Confidence 33455566666666666666666666666666
No 266
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=57.58 E-value=48 Score=23.21 Aligned_cols=36 Identities=28% Similarity=0.373 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 173 ADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEAR 208 (335)
Q Consensus 173 e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k 208 (335)
|.....|+..++.+...-+.|......|.+.+..++
T Consensus 4 E~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~ 39 (45)
T PF02183_consen 4 ERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELK 39 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555444444444444444444444433
No 267
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=57.23 E-value=1.2e+02 Score=28.84 Aligned_cols=45 Identities=18% Similarity=0.209 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 173 ADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 217 (335)
Q Consensus 173 e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr 217 (335)
..-+.-+..|.|.++....+|+.+++++...+..++++.+.|++-
T Consensus 78 ~siLpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~D 122 (248)
T PF08172_consen 78 SSILPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRAD 122 (248)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777788888888888888888888888887777777653
No 268
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=56.87 E-value=3e+02 Score=30.13 Aligned_cols=44 Identities=11% Similarity=0.115 Sum_probs=30.5
Q ss_pred cccccCchHHHHHHHHHHHHHHHhhccC--CHHHHHHHHHHHHHHH
Q 019853 71 ALNTRMNLFDRLARVVKSYANAILSSFE--DPEKILEQAVLEMNDD 114 (335)
Q Consensus 71 ~~~~~Msif~Rl~~lira~in~~ldk~E--DPe~~LdQ~Ireme~~ 114 (335)
.+..+|++..|+...++..+-++....+ +-.+.+.-.|+...+.
T Consensus 354 t~~s~~~~~~r~~q~lke~~k~~~~ite~~tklk~l~etl~~~~~~ 399 (716)
T KOG4593|consen 354 TVTSPARGLERARQLLKEELKQVAGITEEETKLKELHETLARRLQK 399 (716)
T ss_pred cccCcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 4567889999999999999888776654 3345555555544443
No 269
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=56.79 E-value=3.2e+02 Score=30.52 Aligned_cols=28 Identities=11% Similarity=0.108 Sum_probs=15.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 99 DPEKILEQAVLEMNDDLVKMRQATAQVL 126 (335)
Q Consensus 99 DPe~~LdQ~Ireme~~L~kar~~lA~v~ 126 (335)
+-...|++-|.|.+-.+...+..+..+-
T Consensus 451 ~k~qqls~kl~Dvr~~~tt~kt~ie~~~ 478 (1118)
T KOG1029|consen 451 FKLQQLSGKLQDVRVDITTQKTEIEEVT 478 (1118)
T ss_pred HHHHHHhhhhhhheeccchHHHHHHHhh
Confidence 3445556666666555555555555443
No 270
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=56.74 E-value=2e+02 Score=28.19 Aligned_cols=101 Identities=20% Similarity=0.251 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 111 MNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVV 190 (335)
Q Consensus 111 me~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~le~qle~~~~~v 190 (335)
++++|.-+|..+..+...-..-+.+|-+-.+-+.+--+..+.+++-+.|.|.+.+. .|-.++..|...-..+....
T Consensus 4 Lq~eia~LrlEidtik~q~qekE~ky~ediei~Kekn~~Lqk~lKLneE~ltkTi~----qy~~QLn~L~aENt~L~SkL 79 (305)
T PF14915_consen 4 LQDEIAMLRLEIDTIKNQNQEKEKKYLEDIEILKEKNDDLQKSLKLNEETLTKTIF----QYNGQLNVLKAENTMLNSKL 79 (305)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH----HHhhhHHHHHHHHHHHhHHH
Confidence 46778888888888888877788888887777888888888899999988887663 46677777777766666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 191 NNLVSNTRLLESKIQEARSKKDTLK 215 (335)
Q Consensus 191 ~~Lk~~l~~Le~ki~e~k~kr~~Lk 215 (335)
+.=+.+-..|++.|+.++.++....
T Consensus 80 e~EKq~kerLEtEiES~rsRLaaAi 104 (305)
T PF14915_consen 80 EKEKQNKERLETEIESYRSRLAAAI 104 (305)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666777777777766665544
No 271
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=56.25 E-value=87 Score=23.78 Aligned_cols=48 Identities=25% Similarity=0.367 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 177 NALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTA 224 (335)
Q Consensus 177 ~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~~~AkAq 224 (335)
..++..++++=....+|+..-..|..++..+...+..|+.+...|+.+
T Consensus 3 ~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~r 50 (65)
T TIGR02449 3 QALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQK 50 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666666666666666777777777777777766666443
No 272
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=56.18 E-value=1.6e+02 Score=26.85 Aligned_cols=42 Identities=14% Similarity=0.191 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 174 DNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (335)
Q Consensus 174 ~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~Lk 215 (335)
..+...+..+......+......+.+-..-++..+.+.+.|.
T Consensus 116 ~~l~~a~~nl~~a~~~a~~AQ~el~eK~qLLeaAk~Rve~L~ 157 (188)
T PF05335_consen 116 AALKAAQANLANAEQVAEGAQQELAEKTQLLEAAKRRVEELQ 157 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333344444333
No 273
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=56.16 E-value=2.8e+02 Score=29.62 Aligned_cols=71 Identities=23% Similarity=0.376 Sum_probs=56.9
Q ss_pred HHhhccC-CH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Q 019853 92 AILSSFE-DP--EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAR 163 (335)
Q Consensus 92 ~~ldk~E-DP--e~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAr 163 (335)
+.+..++ +| +..|+-.++.+++++.+.+..+.............++.+..+++.-+...+. |++.+++|=.
T Consensus 249 e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~-lq~~~d~Lk~ 322 (581)
T KOG0995|consen 249 EMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEK-LQKENDELKK 322 (581)
T ss_pred HHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 3343333 55 6888889999999999999999998888888999999999999988888765 7777776653
No 274
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=55.62 E-value=1.4e+02 Score=26.10 Aligned_cols=53 Identities=11% Similarity=0.148 Sum_probs=24.9
Q ss_pred CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 99 DP-EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQ 151 (335)
Q Consensus 99 DP-e~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~ 151 (335)
.| ..+|+.=-.....+|..+...-..+.......+.++..++.++.+.-..|.
T Consensus 33 ~pi~~~le~R~~~I~~~l~~Ae~~k~eAe~~~~~~e~~L~~A~~ea~~Ii~~A~ 86 (167)
T PRK14475 33 KALAGALDAYAAKIQAELDEAQRLREEAQALLADVKAEREEAERQAAAMLAAAK 86 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 355555555555555555555444444444444444444444444433333
No 275
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=55.45 E-value=2.1e+02 Score=27.99 Aligned_cols=142 Identities=20% Similarity=0.318 Sum_probs=78.7
Q ss_pred ccCchHHHHHHHHHHHHHHHhhccCCH--HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 74 TRMNLFDRLARVVKSYANAILSSFEDP--EKILEQAVLEMNDDLVKMRQA------TAQVLASQKRLENKCKAAEQASED 145 (335)
Q Consensus 74 ~~Msif~Rl~~lira~in~~ldk~EDP--e~~LdQ~Ireme~~L~kar~~------lA~v~A~~k~le~kl~~~~~~~~~ 145 (335)
..++|=..+.++-.-.-+..+ +| +.-|-|.|-+++..|..++.. +..+.+....+..+...+...+..
T Consensus 108 ~~~~ler~i~~Le~~~~T~~L----~~e~E~~lvq~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~~~~e~~eki~~ 183 (294)
T COG1340 108 SIKSLEREIERLEKKQQTSVL----TPEEERELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQE 183 (294)
T ss_pred CHHHHHHHHHHHHHHHHhcCC----ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555554444433333 45 466677777777777777644 333334444444444444444444
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 146 WYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTA 224 (335)
Q Consensus 146 ~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~~~AkAq 224 (335)
+.++|..- -+++. .+..+.-.+...+..|-..+......++.+...+..++..|.++...+..|.+.....+..
T Consensus 184 la~eaqe~----he~m~-k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~l~~~~~~~~~~ 257 (294)
T COG1340 184 LANEAQEY----HEEMI-KLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKALRAKEKAAKRR 257 (294)
T ss_pred HHHHHHHH----HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444211 11222 2444455556666667777777777777777777777777777777777666655554433
No 276
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=55.41 E-value=1.2e+02 Score=25.32 Aligned_cols=52 Identities=15% Similarity=0.209 Sum_probs=29.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 158 EEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKK 211 (335)
Q Consensus 158 ~EdLAreAL~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr 211 (335)
++.|-.+...++...+..+...+..|.++...-+. +.|.+-+.||.+.+.++
T Consensus 61 d~~l~~e~q~ki~~~~~kV~ere~eL~eA~~~G~~--~KI~K~~~KL~ea~~eL 112 (115)
T PF06476_consen 61 DEGLKAERQQKIAEKQQKVAEREAELKEAQAKGDS--DKIAKRQKKLAEAKAEL 112 (115)
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHH
Confidence 34555556666666666666666666665555443 45555555555555444
No 277
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=55.28 E-value=2e+02 Score=29.78 Aligned_cols=58 Identities=24% Similarity=0.308 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 81 RLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAA 139 (335)
Q Consensus 81 Rl~~lira~in~~ldk~EDPe~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~ 139 (335)
|=...-+-.+|.+..++|- -.-.+|.+.||++-|.+++..--.|..++..|++++.++
T Consensus 235 ~Qnk~akehv~km~kdle~-Lq~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea 292 (575)
T KOG4403|consen 235 RQNKKAKEHVNKMMKDLEG-LQRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEA 292 (575)
T ss_pred hhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhh
Confidence 3444556667777666654 344688889999999999888777777888888888743
No 278
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=55.09 E-value=1.7e+02 Score=26.89 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 101 EKILEQAVLEMNDDLVKMRQATAQ 124 (335)
Q Consensus 101 e~~LdQ~Ireme~~L~kar~~lA~ 124 (335)
+..|.-.+.+++..|.++......
T Consensus 98 evrLkrELa~Le~~l~~~~~~~~~ 121 (195)
T PF12761_consen 98 EVRLKRELAELEEKLSKVEQAAES 121 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 577888888888888888887665
No 279
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=55.03 E-value=1.8e+02 Score=26.98 Aligned_cols=52 Identities=13% Similarity=0.145 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 169 RKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQS 220 (335)
Q Consensus 169 k~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~~~ 220 (335)
+......+..+....+++...+..+...+..|-.+++.++.-...++.....
T Consensus 64 ~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~ 115 (207)
T PF05010_consen 64 KELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEET 115 (207)
T ss_pred HHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 4444555666666666666666666666666666666666666655554433
No 280
>COG2882 FliJ Flagellar biosynthesis chaperone [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=54.95 E-value=1.5e+02 Score=26.09 Aligned_cols=98 Identities=13% Similarity=0.192 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 112 NDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVN 191 (335)
Q Consensus 112 e~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~le~qle~~~~~v~ 191 (335)
+....++...+..++......+.++..+...-.++..+...=+..|= ...+...|+..+..|+..++++...+.
T Consensus 15 ~k~~e~a~~el~k~~~~~~~~~~qL~~l~~y~~ey~q~~~~k~~~G~------s~~q~~nyq~fI~~Le~~I~q~~~~~~ 88 (148)
T COG2882 15 KKEEEEAAIELSKIRSEKENAEEQLKMLSGYRNEYEQNLNEKLKSGV------SAAQWQNYQQFISQLEVAIDQQQSQLS 88 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666777777777888888888888888888888777777764 455667888889999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 192 NLVSNTRLLESKIQEARSKKDTLK 215 (335)
Q Consensus 192 ~Lk~~l~~Le~ki~e~k~kr~~Lk 215 (335)
.+...+......+.+.+.++..+.
T Consensus 89 ~~~~~ve~~r~~w~ek~~~~k~~e 112 (148)
T COG2882 89 KLRKQVEQKREIWQEKQIELKALE 112 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888887777777766666543
No 281
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=54.86 E-value=1.9e+02 Score=27.22 Aligned_cols=40 Identities=15% Similarity=0.222 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 173 ADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKD 212 (335)
Q Consensus 173 e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~ 212 (335)
....+.|..+.......+..+..++..|+.-|.+.+..++
T Consensus 38 ~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~ 77 (230)
T PF10146_consen 38 RKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERN 77 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444444444444444444444444444
No 282
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=54.85 E-value=88 Score=27.41 Aligned_cols=51 Identities=16% Similarity=0.300 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 170 KSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQS 220 (335)
Q Consensus 170 ~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~~~ 220 (335)
.++++-++.|+..++.+.....++...+.+|..++..+..+...+..+...
T Consensus 90 ~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~~~ 140 (145)
T COG1730 90 KSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQAA 140 (145)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777777777777777777777777777666665544433
No 283
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=54.81 E-value=2.2e+02 Score=29.86 Aligned_cols=52 Identities=19% Similarity=0.227 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 166 LKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 217 (335)
Q Consensus 166 L~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr 217 (335)
..|.+-..+++..+..-+......+.+|...-...-.||+++|+|...|--|
T Consensus 340 ~~R~K~Q~q~~~~~r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~R 391 (508)
T KOG3091|consen 340 RQRLKVQDQEVKQHRIRINAIGERVTELQKHHADAVAKIEEAKNRHVELSHR 391 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555566666555555556666666666666555
No 284
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=54.46 E-value=2.9e+02 Score=29.33 Aligned_cols=57 Identities=11% Similarity=0.149 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 019853 100 PEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGE 158 (335)
Q Consensus 100 Pe~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~ 158 (335)
|..-||-.+..+.+++.+....+.++- -...+..+..++..++.+++.-..=+.+++
T Consensus 249 ~~~~id~~~~~L~~~l~~~~~~l~~Le--ld~aeeel~~I~e~ie~lYd~lE~EveA~~ 305 (570)
T COG4477 249 EHVNIDSRLERLKEQLVENSELLTQLE--LDEAEEELGLIQEKIESLYDLLEREVEAKN 305 (570)
T ss_pred ccccHHHHHHHHHHHHHHHHhHHHHhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777777776666655443 234455666777777777776665554444
No 285
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=54.07 E-value=2.1e+02 Score=27.60 Aligned_cols=46 Identities=17% Similarity=0.258 Sum_probs=31.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 99 DPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWY 147 (335)
Q Consensus 99 DPe~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e 147 (335)
+|..-+.|...+|++.+.+....-+.+- +.++.++.+++....+++
T Consensus 20 ~l~~~ykq~f~~~reEl~EFQegSrE~E---aelesqL~q~etrnrdl~ 65 (333)
T KOG1853|consen 20 LLHHEYKQHFLQMREELNEFQEGSREIE---AELESQLDQLETRNRDLE 65 (333)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhhHHHH---HHHHHHHHHHHHHHHHHH
Confidence 5667788999999999999888766543 345555555555444443
No 286
>PF07794 DUF1633: Protein of unknown function (DUF1633); InterPro: IPR012436 This family contains sequences derived from a group of hypothetical proteins expressed by Arabidopsis thaliana (Mouse-ear cress). These sequences are highly similar and the region concerned is about 100 residues long.
Probab=53.87 E-value=2.9e+02 Score=29.23 Aligned_cols=59 Identities=14% Similarity=0.198 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Q 019853 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAR 163 (335)
Q Consensus 101 e~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAr 163 (335)
+.++++.|+-++-+++-++..+..+-+.++.+++++-++-.-+ +-++.|+.-|.-+||-
T Consensus 599 i~~me~Ei~glq~DkQ~ar~qIh~Le~~Reelsk~V~DLtssa----QgakKAVhdaK~ElA~ 657 (790)
T PF07794_consen 599 IGFMEMEIGGLQADKQTARNQIHRLEQRREELSKRVMDLTSSA----QGAKKAVHDAKVELAA 657 (790)
T ss_pred hhhhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhhHHHHHHHHHHHHH
Confidence 3567778888888887777777766666666665555544333 2344577777777774
No 287
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=53.81 E-value=3.1e+02 Score=29.44 Aligned_cols=48 Identities=17% Similarity=0.246 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYR 148 (335)
Q Consensus 101 e~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~ 148 (335)
..-|...|.++..++.++...+.......+++...+.+........+.
T Consensus 330 l~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~ 377 (594)
T PF05667_consen 330 LEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEE 377 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555566666666666666555555555555555555444444433
No 288
>PRK01156 chromosome segregation protein; Provisional
Probab=53.77 E-value=3.5e+02 Score=29.99 Aligned_cols=40 Identities=13% Similarity=0.147 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 172 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKK 211 (335)
Q Consensus 172 ~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr 211 (335)
+...+..+...+......+..+..++..++.++..++...
T Consensus 686 l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel~~~~~~~ 725 (895)
T PRK01156 686 SRKALDDAKANRARLESTIEILRTRINELSDRINDINETL 725 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444444433333
No 289
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=53.49 E-value=2.7e+02 Score=28.70 Aligned_cols=66 Identities=14% Similarity=0.204 Sum_probs=39.2
Q ss_pred HhcCcHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 154 LQKGEEDLAREAL---KRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQ 219 (335)
Q Consensus 154 L~~G~EdLAreAL---~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~~ 219 (335)
+.+.+++++-... .++..+.++-..|...+-....++-.....++.++.+++=...+++.|.....
T Consensus 202 le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey~~~~~q~~~~~del~Sle~q~~~s~~qldkL~ktNv 270 (447)
T KOG2751|consen 202 LEKEEAELDHQLKELEFKAERLNEEEDQYWREYNNFQRQLIEHQDELDSLEAQIEYSQAQLDKLRKTNV 270 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4555666664332 23344555555666666666666666677777777777766666666655433
No 290
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=53.12 E-value=1.8e+02 Score=26.35 Aligned_cols=68 Identities=13% Similarity=0.187 Sum_probs=53.4
Q ss_pred CchHHHHHHHHHHHHHHHhhccC--CHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 76 MNLFDRLARVVKSYANAILSSFE--DPE-KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWY 147 (335)
Q Consensus 76 Msif~Rl~~lira~in~~ldk~E--DPe-~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e 147 (335)
+|+|+.+...+... .-++. ||. .-..+++..++.+|..+.+.+..++...+.+-.-+.++-.....|-
T Consensus 2 ~~~~~~~~~s~~~~----~~~~~e~D~~F~~~~~~~~~le~~Lk~l~~~~~~l~~~~~~l~~~~~e~~~~~~~la 72 (236)
T PF09325_consen 2 KGLFGKLFDSVSNS----SPKMKEPDEWFEEIKDYVDKLEEQLKKLYKSLERLVKRRQELASALAEFGSSFSQLA 72 (236)
T ss_pred hhHHHHHHHHHHcc----CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 36777777776665 33444 553 7788999999999999999999999998888888888877777665
No 291
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=53.07 E-value=1.4e+02 Score=25.20 Aligned_cols=43 Identities=26% Similarity=0.349 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 173 ADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (335)
Q Consensus 173 e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~Lk 215 (335)
+.++..+..++.++...+..|..++..+...+.+++.-++.+.
T Consensus 5 ~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~ 47 (140)
T PRK03947 5 EQELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLE 47 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777777777777777766666655
No 292
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=52.87 E-value=75 Score=27.43 Aligned_cols=33 Identities=15% Similarity=0.232 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 191 NNLVSNTRLLESKIQEARSKKDTLKARAQSAKT 223 (335)
Q Consensus 191 ~~Lk~~l~~Le~ki~e~k~kr~~LkAr~~~AkA 223 (335)
..|..++.+|...+..++.+++.|+.+...+..
T Consensus 84 ~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~ 116 (135)
T KOG4196|consen 84 AELQQQVEKLKEENSRLRRELDAYKSKYEALQN 116 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444555555566677777777777666533
No 293
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=52.87 E-value=1.4e+02 Score=25.22 Aligned_cols=44 Identities=14% Similarity=0.160 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 107 AVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKA 150 (335)
Q Consensus 107 ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA 150 (335)
.|..|...|......++.+.-.-.+++...+.+..++-++....
T Consensus 17 ~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~ 60 (120)
T PF12325_consen 17 LVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEEN 60 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666555555555555555555555544443
No 294
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=52.76 E-value=2.1e+02 Score=27.03 Aligned_cols=17 Identities=12% Similarity=0.001 Sum_probs=10.6
Q ss_pred CchHHHHHHHHHHHHHH
Q 019853 76 MNLFDRLARVVKSYANA 92 (335)
Q Consensus 76 Msif~Rl~~lira~in~ 92 (335)
.|-|...|+.+...+..
T Consensus 59 ~gsl~~aw~~~~~e~e~ 75 (258)
T cd07655 59 YGTLETAWKGLLSEAER 75 (258)
T ss_pred CChHHHHHHHHHHHHHH
Confidence 45666777766666555
No 295
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=52.73 E-value=71 Score=33.26 Aligned_cols=44 Identities=9% Similarity=0.062 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 172 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (335)
Q Consensus 172 ~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~Lk 215 (335)
+|.+++.++.+++........++..|.+++..++.++.+.+.+.
T Consensus 81 LEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~ 124 (475)
T PRK13729 81 MQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALG 124 (475)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34455555555555555555555555555555555555554333
No 296
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=52.23 E-value=2.2e+02 Score=27.30 Aligned_cols=51 Identities=10% Similarity=0.017 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 78 LFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLAS 128 (335)
Q Consensus 78 if~Rl~~lira~in~~ldk~EDPe~~LdQ~Ireme~~L~kar~~lA~v~A~ 128 (335)
.|..-..-.++.++++-++.+.-..-|.|.+.+++..|.++...|.-+.+.
T Consensus 60 ~~~~~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TY 110 (258)
T PF15397_consen 60 SNHKQLQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTY 110 (258)
T ss_pred cChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445666777777777777778888888888888888877655443
No 297
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=52.06 E-value=2.5e+02 Score=27.75 Aligned_cols=134 Identities=19% Similarity=0.188 Sum_probs=0.0
Q ss_pred CcccccCchHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 70 GALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRK 149 (335)
Q Consensus 70 ~~~~~~Msif~Rl~~lira~in~~ldk~EDPe~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~r 149 (335)
|+.|+.-|.+++ +.+-++..-|.|.-+-++..+.-.+.-...+...-+.+...--.+...++.-+..
T Consensus 11 ~~~~~~~S~~t~-------------~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~ 77 (310)
T PF09755_consen 11 GAGMTSSSSATR-------------EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEF 77 (310)
T ss_pred CCCCCCCCCCch-------------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HH-------HHHhcCcHHHHHHHHH-----------HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 150 AQ-------LALQKGEEDLAREALK-----------RRKSYADNANALKAQLDQ-QKNVVNNLVSNTRLLESKIQEARSK 210 (335)
Q Consensus 150 A~-------~AL~~G~EdLAreAL~-----------rk~~~e~q~~~le~qle~-~~~~v~~Lk~~l~~Le~ki~e~k~k 210 (335)
.- .+|++..++||...-. +...+...-..++..+++ +.-.|.+|...+..|+.........
T Consensus 78 isN~LlKkl~~l~keKe~L~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~ 157 (310)
T PF09755_consen 78 ISNTLLKKLQQLKKEKETLALKYEQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEE 157 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHH
Q ss_pred HHHHHH
Q 019853 211 KDTLKA 216 (335)
Q Consensus 211 r~~LkA 216 (335)
++.|..
T Consensus 158 le~Lr~ 163 (310)
T PF09755_consen 158 LERLRR 163 (310)
T ss_pred HHHHHH
No 298
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=52.03 E-value=2.2e+02 Score=27.06 Aligned_cols=71 Identities=14% Similarity=0.234 Sum_probs=47.5
Q ss_pred chHHHHHHHHHHHHHHHhh-ccCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 77 NLFDRLARVVKSYANAILS-SFEDPE-KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWY 147 (335)
Q Consensus 77 sif~Rl~~lira~in~~ld-k~EDPe-~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e 147 (335)
|+++++.+-+++-++.+-- +--|++ .-+..++..+++.|..+.+-++++.-....+...+.++..-...|.
T Consensus 30 g~~~~~~d~~~~~~s~~~~v~~~~~eF~Emkey~d~L~~~L~~ieki~~Rl~kr~~ey~~~~~~fgk~~~lws 102 (243)
T cd07666 30 GLLSRMGQTVKAVASSVRGVKNRPEEFTEMNEYVEAFSQKINVLDKISQRIYKEQREYFEELKEYGPIYTLWS 102 (243)
T ss_pred hhhhhhHHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 4667777777766666411 323444 6677788888888888888888887777666666666666665553
No 299
>PLN02939 transferase, transferring glycosyl groups
Probab=51.99 E-value=3.7e+02 Score=30.72 Aligned_cols=77 Identities=13% Similarity=0.217 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Q 019853 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKR-LENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANAL 179 (335)
Q Consensus 101 e~~LdQ~Ireme~~L~kar~~lA~v~A~~k~-le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~l 179 (335)
...|+-++++++..+..+...+..+...+.. +=.+++.++...+...+++..| -..|.+-+++.+++..+
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~ 336 (977)
T PLN02939 266 RSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLDRATNQVEKA---------ALVLDQNQDLRDKVDKL 336 (977)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHhccchHHHHHHHHH
Confidence 3678888888888888877777766554332 3334444444444444444443 33455555556666666
Q ss_pred HHHHHHH
Q 019853 180 KAQLDQQ 186 (335)
Q Consensus 180 e~qle~~ 186 (335)
+..++..
T Consensus 337 ~~~~~~~ 343 (977)
T PLN02939 337 EASLKEA 343 (977)
T ss_pred HHHHHHh
Confidence 6665543
No 300
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=51.95 E-value=1.5e+02 Score=25.12 Aligned_cols=10 Identities=30% Similarity=0.411 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 019853 112 NDDLVKMRQA 121 (335)
Q Consensus 112 e~~L~kar~~ 121 (335)
...+.++...
T Consensus 32 ~~~l~~A~~~ 41 (147)
T TIGR01144 32 ADGLASAERA 41 (147)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 301
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=51.87 E-value=2.9e+02 Score=28.42 Aligned_cols=10 Identities=30% Similarity=0.617 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 019853 280 VDDDLANLKK 289 (335)
Q Consensus 280 vddeLa~LKa 289 (335)
+.++|..+..
T Consensus 292 v~~eL~~~~~ 301 (445)
T PRK13428 292 VEDQLFRFSR 301 (445)
T ss_pred HHHHHHHHHH
Confidence 3344444433
No 302
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=51.86 E-value=2e+02 Score=29.95 Aligned_cols=48 Identities=19% Similarity=0.281 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRK 149 (335)
Q Consensus 102 ~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~r 149 (335)
+.|=-.+++++..+..+...=..+.++-.+|+++......+|...-+.
T Consensus 62 rTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~ 109 (472)
T TIGR03752 62 RTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQS 109 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 333334444444444444444444444444444444444444333333
No 303
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=51.52 E-value=97 Score=22.89 Aligned_cols=12 Identities=8% Similarity=0.443 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHH
Q 019853 217 RAQSAKTATKVS 228 (335)
Q Consensus 217 r~~~AkAq~~v~ 228 (335)
...+++|-+++.
T Consensus 37 k~EAaRAN~RlD 48 (56)
T PF04728_consen 37 KEEAARANQRLD 48 (56)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334445554443
No 304
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=51.51 E-value=3.6e+02 Score=29.42 Aligned_cols=23 Identities=9% Similarity=0.094 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019853 126 LASQKRLENKCKAAEQASEDWYR 148 (335)
Q Consensus 126 ~A~~k~le~kl~~~~~~~~~~e~ 148 (335)
-.+-..++.+++..+..++++..
T Consensus 273 ~~qL~~l~~~L~~aE~~l~~fr~ 295 (726)
T PRK09841 273 QRQLPEVRSELDQAEEKLNVYRQ 295 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444333
No 305
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=51.45 E-value=1.7e+02 Score=25.55 Aligned_cols=47 Identities=23% Similarity=0.347 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Q 019853 168 RRKSYADNANALKAQLDQQKNVVNNL--VSNTRLLESKIQEARSKKDTL 214 (335)
Q Consensus 168 rk~~~e~q~~~le~qle~~~~~v~~L--k~~l~~Le~ki~e~k~kr~~L 214 (335)
++-.|...+..++..+..+-+..-++ -.++.++...+.++..+++..
T Consensus 95 kk~~y~~Ki~~le~~l~~f~~v~~q~~~~~D~~~l~~~~~e~~~kl~~i 143 (147)
T PF05659_consen 95 KKPRYARKIEELEESLRRFIQVDLQLHQLRDIKELLAKMSEMNTKLDDI 143 (147)
T ss_pred hhHhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567888888888877765543333 345666677777777666644
No 306
>PLN02769 Probable galacturonosyltransferase
Probab=51.38 E-value=1.1e+02 Score=33.14 Aligned_cols=112 Identities=16% Similarity=0.102 Sum_probs=73.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Q 019853 98 EDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNAN 177 (335)
Q Consensus 98 EDPe~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~ 177 (335)
|.-+.|-|-.++.|+++|.-||.-++.+ |..+.-.+-..++...|.+.+.-.-. ...+.||=..+..+....+..+.
T Consensus 173 e~~~~~~d~~~~~l~Dql~~Ak~y~~~i-ak~~~~~~l~~el~~~i~e~~~~l~~--~~~d~dlp~~~~~~~~~m~~~~~ 249 (629)
T PLN02769 173 EHKEVMKDSIVKRLKDQLFVARAYYPSI-AKLPGQEKLTRELKQNIQEHERVLSE--SITDADLPPFIQKKLEKMEQTIA 249 (629)
T ss_pred cccccCcHHHHHHHHHHHHHHHHHHHhh-cccCCcHHHHHHHHHHHHHHHHHHhh--ccccccCChhHHHHHHHHHHHHH
Confidence 4445677888999999999999865332 22222233334444445444443333 23477888888888888888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 178 ALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKD 212 (335)
Q Consensus 178 ~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~ 212 (335)
..+.........+.+|+.-+..+|.+..-.+.+-.
T Consensus 250 ~ak~~~~dc~~~~~klr~~l~~~E~~~~~~~kq~~ 284 (629)
T PLN02769 250 RAKSCPVDCNNVDRKLRQILDMTEDEAHFHMKQSA 284 (629)
T ss_pred HHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777778888888888877764444333
No 307
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=51.18 E-value=2.5e+02 Score=27.62 Aligned_cols=105 Identities=14% Similarity=0.232 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKA 181 (335)
Q Consensus 102 ~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~le~ 181 (335)
..|..-++.+++.-..+|.....+...-..++.+-..+ +.+|-++-. .|=.+...+.+.+..-..
T Consensus 163 e~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqL---v~dcv~QL~------------~An~qia~LseELa~k~E 227 (306)
T PF04849_consen 163 EALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQL---VLDCVKQLS------------EANQQIASLSEELARKTE 227 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHH---HHHHHHHhh------------hcchhHHHHHHHHHHHHH
Confidence 67888888888888888887777666655555543333 333322221 122333444455555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 182 QLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSA 221 (335)
Q Consensus 182 qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~~~A 221 (335)
....+...|..|..++..++.++..+-...+.|......+
T Consensus 228 e~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~s 267 (306)
T PF04849_consen 228 ENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQAS 267 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 5566667777777777777777777777777776665555
No 308
>PF07743 HSCB_C: HSCB C-terminal oligomerisation domain; InterPro: IPR009073 This entry represents the C-terminal oligomerisation domain found in HscB (heat shock cognate protein B), which is also known as HSC20 (20K heat shock cognate protein). HscB acts as a co-chaperone to regulate the ATPase activity and peptide-binding specificity of the molecular chaperone HscA, also known as HSC66 (HSP70 class). HscB proteins contain two domains, an N-terminal J-domain, which is involved in interactions with HscA, connected by a short loop to the C-terminal oligomerisation domain; the two domains make contact through a hydrophobic interface. The core of the oligomerisation domain is thought to bind and target proteins to HscA and consists of an open, three-helical bundle []. HscB, along with HscA, has been shown to play a role in the biogenesis of iron-sulphur proteins.; GO: 0006457 protein folding; PDB: 1FPO_C 3BVO_B 3HHO_A 3UO2_B 3UO3_B.
Probab=51.00 E-value=1.1e+02 Score=23.20 Aligned_cols=75 Identities=23% Similarity=0.332 Sum_probs=44.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Q 019853 98 EDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNAN 177 (335)
Q Consensus 98 EDPe~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~ 177 (335)
.||+-+.+|. ++.+.|..+... .....+..-..+....+..+......++..++-+-|+..+.+..-+..-..
T Consensus 2 ~d~eFLme~m--E~rE~le~~~~~-----~~~~~L~~l~~~~~~~~~~~~~~l~~~f~~~d~~~A~~~~~kLky~~kl~~ 74 (78)
T PF07743_consen 2 MDPEFLMEQM--ELREELEEAQNS-----DDEAELEELKKEIEERIKELIKELAEAFDAKDWEEAKEALRKLKYLQKLLE 74 (78)
T ss_dssp S-HHHHHHHH--HHHHHHHHHCCC-----TSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHH--HHHHHHHHhhcC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHH
Confidence 3676555543 566666666321 011223334445555566666666777789999999999988877766554
Q ss_pred HH
Q 019853 178 AL 179 (335)
Q Consensus 178 ~l 179 (335)
.+
T Consensus 75 ~i 76 (78)
T PF07743_consen 75 EI 76 (78)
T ss_dssp HH
T ss_pred Hh
Confidence 44
No 309
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=50.83 E-value=1.6e+02 Score=25.20 Aligned_cols=94 Identities=11% Similarity=0.239 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 019853 79 FDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGE 158 (335)
Q Consensus 79 f~Rl~~lira~in~~ldk~EDPe~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~ 158 (335)
|+-|.-+.|-++++++.. +-..+...-+.|..+|+ .|.++++.....+++-.+-
T Consensus 30 ~sD~M~vTrr~m~~A~~~-------v~kql~~vs~~l~~tKk----------hLsqRId~vd~klDe~~ei--------- 83 (126)
T PF07889_consen 30 FSDLMFVTRRSMSDAVAS-------VSKQLEQVSESLSSTKK----------HLSQRIDRVDDKLDEQKEI--------- 83 (126)
T ss_pred hhHHHHHHHHhHHHHHHH-------HHHHHHHHHHHHHHHHH----------HHHHHHHHHHhhHHHHHHH---------
Confidence 566666666665555443 33333334444444433 3445555555444432211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 159 EDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLE 201 (335)
Q Consensus 159 EdLAreAL~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le 201 (335)
...--.+.......+..+...++.....+..|...+..++
T Consensus 84 ---~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 84 ---SKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIE 123 (126)
T ss_pred ---HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1112222233445555556666666666666666665554
No 310
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=50.79 E-value=2.2e+02 Score=26.81 Aligned_cols=64 Identities=14% Similarity=0.123 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHHHHHhhccC--CHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 78 LFDRLARVVKSYANAILSSFE--DPE-KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASED 145 (335)
Q Consensus 78 if~Rl~~lira~in~~ldk~E--DPe-~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~ 145 (335)
||+++.+.|.+ +--+++ ||- .--.+||.+++.+|.++-.++-.++..++.+-.-+.+.-.-+..
T Consensus 2 ~~~~~~d~~~~----~~~k~~E~D~wF~~k~~~ie~LE~qLk~L~k~~~~lv~~r~eLa~~~~eFa~s~~~ 68 (234)
T cd07665 2 MFNKATDAVSK----MTIKMNESDVWFEEKLQEVECEEQRLRKLHAVVETLVNHRKELALNTALFAKSLAM 68 (234)
T ss_pred hhhHHHHHHhc----cccCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666665544 333444 442 56778999999999999999999998888887777766554443
No 311
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=50.74 E-value=2.1e+02 Score=26.51 Aligned_cols=22 Identities=9% Similarity=-0.067 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019853 101 EKILEQAVLEMNDDLVKMRQAT 122 (335)
Q Consensus 101 e~~LdQ~Ireme~~L~kar~~l 122 (335)
-..+-+.+.+.++.-.+..+..
T Consensus 27 l~~a~~KL~Eaeq~~dE~er~~ 48 (205)
T KOG1003|consen 27 LATALQKLEEAEQAADESERGM 48 (205)
T ss_pred HHHHHHHHHHHhhcccHHHHHH
Confidence 3444444444444444444443
No 312
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=50.72 E-value=2.7e+02 Score=27.85 Aligned_cols=15 Identities=40% Similarity=0.554 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHH
Q 019853 139 AEQASEDWYRKAQLA 153 (335)
Q Consensus 139 ~~~~~~~~e~rA~~A 153 (335)
+.....+|.++..++
T Consensus 129 l~~a~~~~~R~~~L~ 143 (352)
T COG1566 129 LDQAQNELERRAELA 143 (352)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444455555555554
No 313
>PRK14127 cell division protein GpsB; Provisional
Probab=50.64 E-value=38 Score=28.27 Aligned_cols=33 Identities=9% Similarity=0.197 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 180 KAQLDQQKNVVNNLVSNTRLLESKIQEARSKKD 212 (335)
Q Consensus 180 e~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~ 212 (335)
-..|+.+...+..|+..+..|+.++.+++.+..
T Consensus 36 ~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 36 IKDYEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334444555555555555555555555555444
No 314
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=50.60 E-value=1.9e+02 Score=26.11 Aligned_cols=11 Identities=18% Similarity=0.365 Sum_probs=6.8
Q ss_pred HHHHHHHHHHH
Q 019853 82 LARVVKSYANA 92 (335)
Q Consensus 82 l~~lira~in~ 92 (335)
|++++.+-+++
T Consensus 32 VKdvlq~LvDD 42 (188)
T PF03962_consen 32 VKDVLQSLVDD 42 (188)
T ss_pred HHHHHHHHhcc
Confidence 56666666653
No 315
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=50.57 E-value=2.5e+02 Score=27.47 Aligned_cols=13 Identities=23% Similarity=0.537 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 019853 108 VLEMNDDLVKMRQ 120 (335)
Q Consensus 108 Ireme~~L~kar~ 120 (335)
+..++.++.+++.
T Consensus 101 ~~~~~a~l~~~~~ 113 (370)
T PRK11578 101 IKEVEATLMELRA 113 (370)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 316
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=50.45 E-value=1.1e+02 Score=26.86 Aligned_cols=24 Identities=21% Similarity=0.393 Sum_probs=12.1
Q ss_pred cHHHHHHHHHHHHHhHHHHHHHhh
Q 019853 238 SALSAFEKMEEKVLTMESQADSLN 261 (335)
Q Consensus 238 ~a~~~feRmEeki~~~EA~AeA~~ 261 (335)
.....+..++..+..++.+.+.+.
T Consensus 113 el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 113 ELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555443
No 317
>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302. Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.
Probab=50.39 E-value=4.1e+02 Score=29.86 Aligned_cols=37 Identities=14% Similarity=0.199 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Q 019853 143 SEDWYRKAQLALQKGEEDLAREALKRRKSYADNANAL 179 (335)
Q Consensus 143 ~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~l 179 (335)
.++.-++.+...+.|+-+-|+++|.+....-+.+..-
T Consensus 570 Lq~Mmd~ieela~~G~~~~A~qlL~qlq~mmenlq~~ 606 (851)
T TIGR02302 570 LQNMMDQIENLARSGDRDQAKQLLSQLQQMMNNLQMG 606 (851)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcc
Confidence 5666677788888899999999998877776666543
No 318
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=50.06 E-value=1.9e+02 Score=25.85 Aligned_cols=44 Identities=18% Similarity=0.159 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 178 ALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSA 221 (335)
Q Consensus 178 ~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~~~A 221 (335)
.++.++..+...+..|...+..|+.++..++....+|..-+..|
T Consensus 108 ~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RA 151 (161)
T TIGR02894 108 RLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRA 151 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444455555444443333
No 319
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=49.72 E-value=4.5e+02 Score=30.10 Aligned_cols=135 Identities=15% Similarity=0.202 Sum_probs=92.4
Q ss_pred CHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcCcHHHHHHHHHHHHHHHH
Q 019853 99 DPEKILEQAVLEMNDD-LVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL---ALQKGEEDLAREALKRRKSYAD 174 (335)
Q Consensus 99 DPe~~LdQ~Ireme~~-L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~---AL~~G~EdLAreAL~rk~~~e~ 174 (335)
+|..+|...++-.... |-+.-..|-..-...++|+...+...+.+..+++.... =+..=++.....-..+......
T Consensus 159 ~pi~LL~eTekAig~~~ll~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~~k~ 238 (1072)
T KOG0979|consen 159 SPIELLVETEKAIGAEELLQYHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERKKSKIELLEKKK 238 (1072)
T ss_pred ChHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7889999888888777 88888888888888889988888777777766655433 1222222222221111111111
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 019853 175 ---NANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVN 235 (335)
Q Consensus 175 ---q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~~~AkAq~~v~~~~~~~~ 235 (335)
....+...+.......+.++.+++.+...+.....++..|.. ....+..++......++
T Consensus 239 ~~v~y~~~~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~--~~~et~~~~s~~~~~~~ 300 (1072)
T KOG0979|consen 239 KWVEYKKHDREYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELES--EKKETRSKISQKQRELN 300 (1072)
T ss_pred cccchHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHh--HHHhHHHHHHHHHHHHH
Confidence 234567788889999999999999999999999999999987 55566666665554443
No 320
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=49.57 E-value=1.7e+02 Score=25.26 Aligned_cols=12 Identities=25% Similarity=0.509 Sum_probs=5.2
Q ss_pred hHHHHHHHHHHH
Q 019853 78 LFDRLARVVKSY 89 (335)
Q Consensus 78 if~Rl~~lira~ 89 (335)
+|..+..++..+
T Consensus 43 l~~Pi~~~l~~R 54 (156)
T CHL00118 43 LYKPLLKVLDER 54 (156)
T ss_pred HHHHHHHHHHHH
Confidence 344444444433
No 321
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=49.48 E-value=2.1e+02 Score=26.16 Aligned_cols=25 Identities=20% Similarity=0.409 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 193 LVSNTRLLESKIQEARSKKDTLKAR 217 (335)
Q Consensus 193 Lk~~l~~Le~ki~e~k~kr~~LkAr 217 (335)
++..+..++.+|..++-+-+.|..+
T Consensus 91 ~k~rl~~~ek~l~~Lk~e~evL~qr 115 (201)
T PF13851_consen 91 LKARLKELEKELKDLKWEHEVLEQR 115 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444433
No 322
>TIGR00255 conserved hypothetical protein TIGR00255. The apparent ortholog from Aquifex aeolicus as reported is split into two consecutive reading frames.
Probab=49.47 E-value=2.6e+02 Score=27.21 Aligned_cols=136 Identities=18% Similarity=0.208 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-----------------HHHHHH
Q 019853 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGE-----------------EDLARE 164 (335)
Q Consensus 102 ~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~-----------------EdLAre 164 (335)
..+.+.+.++-+.+.++|..=...+ +.-+..++..++..+.+.+..+-..+..-+ +-|+++
T Consensus 131 ~~l~~al~~AL~~l~~mR~~EG~~L--~~dl~~rl~~i~~~v~~i~~~~p~~~~~~~~rL~~rl~el~~~~id~~Rl~qE 208 (291)
T TIGR00255 131 ALILGALEEALLDFINMREFEGENL--KSDIVQRLDLIEREVKKVRSAMPDILQWQRERLKARIEDLAQEFLDLNRLEQE 208 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 5677777777777777777654433 223344444444443333333322222222 224433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 019853 165 ALKRRKSYADNANALKAQLDQQKNVVNNLVSNTR-------LLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTS 237 (335)
Q Consensus 165 AL~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~-------~Le~ki~e~k~kr~~LkAr~~~AkAq~~v~~~~~~~~~~ 237 (335)
++ +-..-..+.+++..+..++.+++.-+. +|.-=++|+-++.+++-+..+.+....-+ =
T Consensus 209 va-----l~adK~DI~EEl~RL~sHl~~f~~~L~~~~~vGrkLDFL~QEmnRE~NTigSKs~d~~is~~v---------V 274 (291)
T TIGR00255 209 AA-----LLAQRIDIAEEIDRLDSHVKEFYNILKKGEAVGRKLDFMMQELNRESNTLASKAIDADITNLA---------V 274 (291)
T ss_pred HH-----HHHHhcchHHHHHHHHHHHHHHHHHHhcCCCcCcchhHHHHHHhHHHHHHHHccCcHHHHHHH---------H
Confidence 32 112222334444444444444444443 56666778888888777665555333221 1
Q ss_pred cHHHHHHHHHHHHHhH
Q 019853 238 SALSAFEKMEEKVLTM 253 (335)
Q Consensus 238 ~a~~~feRmEeki~~~ 253 (335)
..-..+++|+|+|...
T Consensus 275 e~K~eiEkiREQVQNI 290 (291)
T TIGR00255 275 EMKVLIEKIKEQIQNI 290 (291)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 2456889999988653
No 323
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=49.41 E-value=2e+02 Score=25.98 Aligned_cols=10 Identities=20% Similarity=0.135 Sum_probs=5.6
Q ss_pred CCCCCCCCCC
Q 019853 17 PAPSSSSSSS 26 (335)
Q Consensus 17 ~~~~~~~~~~ 26 (335)
.++|+.|+|+
T Consensus 23 q~vS~~p~tR 32 (189)
T PF10211_consen 23 QFVSSAPATR 32 (189)
T ss_pred eeeCCCCCCH
Confidence 5666555544
No 324
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=49.09 E-value=3.5e+02 Score=28.61 Aligned_cols=89 Identities=13% Similarity=0.168 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH----HHHHHHHHHHH
Q 019853 108 VLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSY----ADNANALKAQL 183 (335)
Q Consensus 108 Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~----e~q~~~le~ql 183 (335)
|.++-.++..+..-.....++-..+..++...+++-.........+ ..+...+ +..-..|+.|+
T Consensus 422 I~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a------------~~~i~~LqDEL~TTr~NYE~QL 489 (518)
T PF10212_consen 422 IEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEA------------NQNISRLQDELETTRRNYEEQL 489 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHhhHHHHH
Confidence 3344444444444444444444445555554444433333332222 2233333 33334455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 184 DQQKNVVNNLVSNTRLLESKIQEAR 208 (335)
Q Consensus 184 e~~~~~v~~Lk~~l~~Le~ki~e~k 208 (335)
..+..++..|.+++.+-+..|+.+|
T Consensus 490 s~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 490 SMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5566666666666665555555554
No 325
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=48.86 E-value=76 Score=25.00 Aligned_cols=39 Identities=18% Similarity=0.364 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 174 DNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKD 212 (335)
Q Consensus 174 ~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~ 212 (335)
.-...++..++.....+..|+..+..++.++.+++..+.
T Consensus 62 ~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 62 EAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLY 100 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555666666666666666666555443
No 326
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=48.78 E-value=3.7e+02 Score=28.81 Aligned_cols=29 Identities=10% Similarity=0.248 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 165 ALKRRKSYADNANALKAQLDQQKNVVNNL 193 (335)
Q Consensus 165 AL~rk~~~e~q~~~le~qle~~~~~v~~L 193 (335)
.+.++..++.++..++.++.+....+.++
T Consensus 260 ~~~~r~~Le~ei~~le~e~~e~~~~l~~l 288 (650)
T TIGR03185 260 LFEEREQLERQLKEIEAARKANRAQLREL 288 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445666666666666666655555444
No 327
>PF14282 FlxA: FlxA-like protein
Probab=48.63 E-value=1.5e+02 Score=24.26 Aligned_cols=18 Identities=17% Similarity=0.289 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019853 170 KSYADNANALKAQLDQQK 187 (335)
Q Consensus 170 ~~~e~q~~~le~qle~~~ 187 (335)
..+..++..|+.++..+.
T Consensus 22 ~~L~~Qi~~Lq~ql~~l~ 39 (106)
T PF14282_consen 22 EQLQKQIKQLQEQLQELS 39 (106)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444333
No 328
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=48.39 E-value=3.2e+02 Score=28.03 Aligned_cols=17 Identities=6% Similarity=0.069 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019853 104 LEQAVLEMNDDLVKMRQ 120 (335)
Q Consensus 104 LdQ~Ireme~~L~kar~ 120 (335)
|++--..+.++|.++..
T Consensus 30 l~~R~~~I~~~L~eAe~ 46 (445)
T PRK13428 30 MAARQDTVRQQLAESAT 46 (445)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333344444443
No 329
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=48.10 E-value=4.5e+02 Score=29.67 Aligned_cols=10 Identities=30% Similarity=0.199 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 019853 102 KILEQAVLEM 111 (335)
Q Consensus 102 ~~LdQ~Irem 111 (335)
..+.|..|+.
T Consensus 333 ~~~~~~~~e~ 342 (980)
T KOG0980|consen 333 LQIEQLSREV 342 (980)
T ss_pred HHHHHHHHHH
Confidence 3444444433
No 330
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=48.10 E-value=2.4e+02 Score=26.54 Aligned_cols=24 Identities=25% Similarity=0.428 Sum_probs=15.0
Q ss_pred HHHhhhccC-CHHHHHHHHHHHcCC
Q 019853 270 GKFALLETS-SVDDDLANLKKELSG 293 (335)
Q Consensus 270 ~k~a~le~~-~vddeLa~LKa~l~~ 293 (335)
.+...++++ .+.+.|..|+.+|..
T Consensus 176 eR~t~~EKnk~lq~QL~~L~~EL~~ 200 (246)
T PF00769_consen 176 ERVTYAEKNKRLQEQLKELKSELEQ 200 (246)
T ss_dssp C---HHHH-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 344445555 588999999998854
No 331
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=47.72 E-value=1.9e+02 Score=25.24 Aligned_cols=12 Identities=0% Similarity=0.390 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 019853 103 ILEQAVLEMNDD 114 (335)
Q Consensus 103 ~LdQ~Ireme~~ 114 (335)
++-..||.+-++
T Consensus 79 vvA~eir~LA~~ 90 (213)
T PF00015_consen 79 VVADEIRKLAEQ 90 (213)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhhhh
Confidence 333333333333
No 332
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=47.61 E-value=1.6e+02 Score=26.37 Aligned_cols=56 Identities=20% Similarity=0.243 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 163 REALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARA 218 (335)
Q Consensus 163 reAL~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~ 218 (335)
...|+...........++.+....+....+|...+..|+.++..+..+..++.--+
T Consensus 86 I~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY 141 (161)
T TIGR02894 86 ISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDY 141 (161)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444455555555555555555555555555555555555444333
No 333
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=46.77 E-value=1.9e+02 Score=25.02 Aligned_cols=56 Identities=16% Similarity=0.230 Sum_probs=34.7
Q ss_pred CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 99 DP-EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLAL 154 (335)
Q Consensus 99 DP-e~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL 154 (335)
.| ..+|+.--..+..++..+...-..+.......+.++..++.++...-+.|....
T Consensus 31 kpi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~A~~~a 87 (164)
T PRK14473 31 RPVLNLLNERTRRIEESLRDAEKVREQLANAKRDYEAELAKARQEAAKIVAQAQERA 87 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45 356666666666666666666666666666666666666666666666655533
No 334
>PRK11020 hypothetical protein; Provisional
Probab=46.70 E-value=1.8e+02 Score=24.59 Aligned_cols=51 Identities=16% Similarity=0.128 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 132 LENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQ 182 (335)
Q Consensus 132 le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~le~q 182 (335)
+++++..+....+....+--.|...|+.++-.+...++..++.+++.++..
T Consensus 3 ~K~Eiq~L~drLD~~~~Klaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~ 53 (118)
T PRK11020 3 EKNEIKRLSDRLDAIRHKLAAASLRGDAEKYAQFEKEKATLEAEIARLKEV 53 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777788888888889999888777777666666666666554
No 335
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=46.51 E-value=1.1e+02 Score=33.57 Aligned_cols=48 Identities=13% Similarity=0.115 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRK 149 (335)
Q Consensus 102 ~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~r 149 (335)
.-|-++||..+..|...+..-.+.-..+.+.+.+..+++.+-.+.+.+
T Consensus 425 Iplv~~~r~aK~~i~~~~~~~~~a~~ar~r~e~r~~R~~r~~~~~~~~ 472 (695)
T PRK05035 425 IPLVQYYRQAKAEIRAIEQEKKKAEEAKARFEARQARLEREKAAREAR 472 (695)
T ss_pred CcHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557789999998887776666666666667777666666555444433
No 336
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=46.51 E-value=2e+02 Score=28.26 Aligned_cols=25 Identities=20% Similarity=0.041 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 125 VLASQKRLENKCKAAEQASEDWYRK 149 (335)
Q Consensus 125 v~A~~k~le~kl~~~~~~~~~~e~r 149 (335)
-+..+-..--.|-.....+.=...+
T Consensus 198 ~Lc~WV~A~~~Y~~v~~~V~P~~~~ 222 (344)
T PF12777_consen 198 SLCKWVRAMVKYYEVNKEVEPKRQK 222 (344)
T ss_dssp HHHHHHHHHHHHHHHCCCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3334444444555544444443333
No 337
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=46.40 E-value=3.1e+02 Score=27.27 Aligned_cols=52 Identities=13% Similarity=0.218 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHH
Q 019853 109 LEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEED 160 (335)
Q Consensus 109 reme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~Ed 160 (335)
+...+.+..+.+.+--++-.-.-+.+-++++..+++-+-.-+..|+..|++.
T Consensus 239 ~~~~~~l~~aakGtyI~~~DldTIsrLV~RL~deIE~~~~~v~fave~~~d~ 290 (336)
T PF05055_consen 239 KKQKEQLDAAAKGTYILIKDLDTISRLVDRLEDEIEHMKALVDFAVERGEDE 290 (336)
T ss_pred HHHHHHHHHHHhccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 3444555555555555566666677888888889999999999999999854
No 338
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=46.08 E-value=87 Score=25.71 Aligned_cols=32 Identities=16% Similarity=0.242 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 178 ALKAQLDQQKNVVNNLVSNTRLLESKIQEARS 209 (335)
Q Consensus 178 ~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~ 209 (335)
.+++++++++....+++..-..|+.+|..+++
T Consensus 31 ~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 31 RVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34444444444444444444444444444444
No 339
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=46.03 E-value=93 Score=25.53 Aligned_cols=46 Identities=17% Similarity=0.192 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 107 AVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL 152 (335)
Q Consensus 107 ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~ 152 (335)
.+++++.++...++.++.+.+....|+.+++.++...+-.++.|+.
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR~ 73 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERARN 73 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHH
Confidence 4567777777777777777777777777777776644444444443
No 340
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=45.91 E-value=2e+02 Score=24.84 Aligned_cols=51 Identities=10% Similarity=0.169 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL 152 (335)
Q Consensus 102 ~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~ 152 (335)
.+|+.-=.....++.++......+.......+.++..++.++...-+.|+.
T Consensus 32 ~~l~~R~~~I~~~l~~A~~~~~eA~~~~~e~~~~l~~a~~ea~~ii~~a~~ 82 (159)
T PRK13461 32 AVIDSRQSEIDNKIEKADEDQKKARELKLKNERELKNAKEEGKKIVEEYKS 82 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455544445555555555554444444444555555555554444444443
No 341
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=45.83 E-value=3.8e+02 Score=28.10 Aligned_cols=10 Identities=30% Similarity=0.215 Sum_probs=5.9
Q ss_pred HHHHHHHHHH
Q 019853 280 VDDDLANLKK 289 (335)
Q Consensus 280 vddeLa~LKa 289 (335)
-.--|+.||+
T Consensus 430 Ea~Ala~ik~ 439 (522)
T PF05701_consen 430 EALALAEIKA 439 (522)
T ss_pred HHHHHHHHHH
Confidence 3445666766
No 342
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=45.71 E-value=1.4e+02 Score=23.24 Aligned_cols=90 Identities=17% Similarity=0.289 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 117 KMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSN 196 (335)
Q Consensus 117 kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~le~qle~~~~~v~~Lk~~ 196 (335)
+++..++.+.......+.++..+......+........ .|- .......+..-+..+...+..+...+..++..
T Consensus 2 ~a~~~l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~-~~~------s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~ 74 (123)
T PF02050_consen 2 QAEQELAEAQQELQEAEEQLEQLQQERQEYQEQLSESQ-QGV------SVAQLRNYQRYISALEQAIQQQQQELERLEQE 74 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------SGG------GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888888888888888888888888866666555 332 22333445555666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019853 197 TRLLESKIQEARSKKDT 213 (335)
Q Consensus 197 l~~Le~ki~e~k~kr~~ 213 (335)
+......+.+...+...
T Consensus 75 ~~~~r~~l~~a~~~~k~ 91 (123)
T PF02050_consen 75 VEQAREELQEARRERKK 91 (123)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66655555555444443
No 343
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=45.27 E-value=2.4e+02 Score=25.73 Aligned_cols=54 Identities=9% Similarity=0.173 Sum_probs=29.5
Q ss_pred CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 99 DP-EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL 152 (335)
Q Consensus 99 DP-e~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~ 152 (335)
.| ..+|++--......+.++......+.......+.++.+++.++...-+.|..
T Consensus 71 kPi~~~L~~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~~A~~eA~~Ii~~A~~ 125 (205)
T PRK06231 71 KPTQRFLNKRKELIEAEINQANELKQQAQQLLENAKQRHENALAQAKEIIDQANY 125 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45 3555555555666666666655555555555555555555555554444443
No 344
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=45.23 E-value=2.8e+02 Score=26.41 Aligned_cols=42 Identities=14% Similarity=0.199 Sum_probs=25.1
Q ss_pred ccCchHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHH
Q 019853 74 TRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMR 119 (335)
Q Consensus 74 ~~Msif~Rl~~lira~in~~ldk~EDPe~~LdQ~Ireme~~L~kar 119 (335)
..+|-|...|+.|+..+..+. +-...|-+.|.++-..|.+..
T Consensus 60 ~~~Gt~~~~~~~~~~e~e~~a----~~H~~la~~L~~~~~~l~~~~ 101 (269)
T cd07673 60 SQLGTFAPVWDVFKTSTEKLA----NCHLELVRKLQELIKEVQKYG 101 (269)
T ss_pred CCcChHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 577889999999988754443 334445555544444444333
No 345
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=45.05 E-value=3.7e+02 Score=27.75 Aligned_cols=58 Identities=14% Similarity=0.126 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcH
Q 019853 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEE 159 (335)
Q Consensus 102 ~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~E 159 (335)
..+|-++.++..++.........-...-++++..+.++....-+...+=..++..+++
T Consensus 148 ~q~da~~qq~~~ele~~d~~~~~d~ee~kqlEe~ieeL~qsl~kd~~~~~~l~~e~n~ 205 (446)
T KOG4438|consen 148 KQLDAKYQQALKELERFDEDVEEDEEEVKQLEENIEELNQSLLKDFNQQMSLLAEYNK 205 (446)
T ss_pred HHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666666666666777778888887777777777777777766664
No 346
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=44.93 E-value=1.1e+02 Score=21.46 Aligned_cols=38 Identities=21% Similarity=0.274 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 179 LKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKA 216 (335)
Q Consensus 179 le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkA 216 (335)
++..++.++..-+.|+.+...|....+.++.+...|..
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~ 40 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKE 40 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555544443
No 347
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=44.91 E-value=2.2e+02 Score=25.07 Aligned_cols=115 Identities=15% Similarity=0.155 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHhhccCCHH---HHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHH
Q 019853 78 LFDRLARVVKSYANAILSSFEDPE---KILEQAVLEMNDDLVKMRQATAQVL----------------ASQKRLENKCKA 138 (335)
Q Consensus 78 if~Rl~~lira~in~~ldk~EDPe---~~LdQ~Ireme~~L~kar~~lA~v~----------------A~~k~le~kl~~ 138 (335)
+|+.+..++..+-..+.+.+++-+ .-.++.+.+.+..+.+++.....++ ..+...++.++.
T Consensus 39 l~kpi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~ 118 (175)
T PRK14472 39 AWGPILSALEEREKGIQSSIDRAHSAKDEAEAILRKNRELLAKADAEADKIIREGKEYAEKLRAEITEKAHTEAKKMIAS 118 (175)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 139 AEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNN 192 (335)
Q Consensus 139 ~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~le~qle~~~~~v~~ 192 (335)
.+..+..-.++|...|+.-=-++|-....+...-.-.......-++.+=..+..
T Consensus 119 a~~~I~~e~~~a~~~l~~~i~~lA~~~a~kil~~~l~~~~~~~li~~~i~~l~~ 172 (175)
T PRK14472 119 AKEEIEQEKRRALDVLRNEVADLAVKGAEKIIRTSLDADKQKKVVDSMIQDLST 172 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHhhh
No 348
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=44.39 E-value=2.3e+02 Score=25.12 Aligned_cols=77 Identities=10% Similarity=0.226 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 019853 110 EMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANA-LKAQLDQQKN 188 (335)
Q Consensus 110 eme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~-le~qle~~~~ 188 (335)
...+++..+...-..+-......+.++..+..++......+. +.++-+++.+++..+..+.. +.+.+.....
T Consensus 45 ~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~-------~~~~a~~~~~~~~~ea~L~~~~~~~~~~~~~ 117 (155)
T PRK06569 45 NIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKEKI-------DSLESEFLIKKKNLEQDLKNSINQNIEDINL 117 (155)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555444444455555555555555554444433 34445566666665555433 2333333333
Q ss_pred HHHHH
Q 019853 189 VVNNL 193 (335)
Q Consensus 189 ~v~~L 193 (335)
.++++
T Consensus 118 ~~~~~ 122 (155)
T PRK06569 118 AAKQF 122 (155)
T ss_pred HHHHH
Confidence 33333
No 349
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=44.35 E-value=1.4e+02 Score=22.55 Aligned_cols=71 Identities=14% Similarity=0.178 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHhhccCCH----HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 019853 79 FDRLARVVKSYANAILSSFEDP----EKILEQAVLEMNDDLVKMRQATAQVL-ASQKRLENKCKAAEQASEDWYRK 149 (335)
Q Consensus 79 f~Rl~~lira~in~~ldk~EDP----e~~LdQ~Ireme~~L~kar~~lA~v~-A~~k~le~kl~~~~~~~~~~e~r 149 (335)
|.-+..-|...++.+-....+. ...++..|.++++-|.++.-.+-.+= ..+..+..++..+.....++...
T Consensus 1 f~~l~~~i~~~l~~~~~~~~~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~ 76 (79)
T PF05008_consen 1 FQALTAEIKSKLERIKNLSGEQRKSLIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKE 76 (79)
T ss_dssp HHHHHHHHHHHHHHGGGS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555554322211 24455555555555555555544332 44555666666666666665554
No 350
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=44.33 E-value=5.5e+02 Score=29.56 Aligned_cols=69 Identities=20% Similarity=0.236 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Q 019853 99 DPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALK 167 (335)
Q Consensus 99 DPe~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~ 167 (335)
+-.+-+.-.|.+|+.-+..+...+.....+-..++.+++++..+.+.-..-...+|...-..+......
T Consensus 244 ~~~~~~~~~i~e~~~~i~~l~e~~~k~~~ei~~le~~ikei~~~rd~em~~~~~~L~~~~~~~~~~~tr 312 (1174)
T KOG0933|consen 244 EKRKNSAHEIEEMKDKIAKLDESLGKTDKEIESLEKEIKEIEQQRDAEMGGEVKALEDKLDSLQNEITR 312 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHH
Confidence 334445556667777777777777777777777777777766666655555555555544444444433
No 351
>PRK11519 tyrosine kinase; Provisional
Probab=44.19 E-value=4.6e+02 Score=28.56 Aligned_cols=19 Identities=21% Similarity=0.293 Sum_probs=8.2
Q ss_pred CHH---HHHHHHHHHHHHHHHH
Q 019853 99 DPE---KILEQAVLEMNDDLVK 117 (335)
Q Consensus 99 DPe---~~LdQ~Ireme~~L~k 117 (335)
||+ .+++......-+...+
T Consensus 238 dP~~Aa~iaN~l~~~Yi~~~~~ 259 (719)
T PRK11519 238 DREQIRDILNSITRNYLEQNIE 259 (719)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 673 3444444443333333
No 352
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=44.13 E-value=5.6e+02 Score=29.59 Aligned_cols=125 Identities=17% Similarity=0.298 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHhcCcHHHH-------------HHH
Q 019853 110 EMNDDLVKMRQATAQVLASQKRLENKCKAA-----------EQASEDWYRKAQLALQKGEEDLA-------------REA 165 (335)
Q Consensus 110 eme~~L~kar~~lA~v~A~~k~le~kl~~~-----------~~~~~~~e~rA~~AL~~G~EdLA-------------reA 165 (335)
.....+.+.+..+..+-..+..++.++... ...+.+|+.-=..|...+.++|. ...
T Consensus 321 ~~~~~ie~~ek~l~av~~~~~~fekei~~~~q~rg~~lnl~d~~~~ey~rlk~ea~~~~~~el~~ln~~~r~~~~~ld~~ 400 (1141)
T KOG0018|consen 321 ALKETIERLEKELKAVEGAKEEFEKEIEERSQERGSELNLKDDQVEEYERLKEEACKEALEELEVLNRNMRSDQDTLDHE 400 (1141)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhH
Confidence 334444444444444444444444444432 23444555545555555555554 344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhcCC
Q 019853 166 LKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQS-----AKTATKVSEMLGNV 234 (335)
Q Consensus 166 L~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~~~-----AkAq~~v~~~~~~~ 234 (335)
+.+..++++.+..++.++.........|...+..++.-+.+.+...+.+.-.... +.....+.+.+..+
T Consensus 401 ~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~~e~n~eL~~~~~ql 474 (1141)
T KOG0018|consen 401 LERRAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEEPYELNEELVEVLDQL 474 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 5667777888888888887777777777777777777777766666665544333 33444444444433
No 353
>PF14942 Muted: Organelle biogenesis, Muted-like protein
Probab=43.74 E-value=2.2e+02 Score=24.83 Aligned_cols=76 Identities=21% Similarity=0.287 Sum_probs=45.3
Q ss_pred chHHHHHH---HHHHHHHHHhhccC----CHH----HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 77 NLFDRLAR---VVKSYANAILSSFE----DPE----KILEQAVLEMNDDL-VKMRQATAQVLASQKRLENKCKAAEQASE 144 (335)
Q Consensus 77 sif~Rl~~---lira~in~~ldk~E----DPe----~~LdQ~Ireme~~L-~kar~~lA~v~A~~k~le~kl~~~~~~~~ 144 (335)
.|++||.+ +|.|-|+-+|+.+| |-+ .-+...|.++.+.+ .+....... .-..+..++..+...+.
T Consensus 7 ~I~sRLfDHrpvIqgEI~~FvkEFE~KRgdRE~~~L~~~~~~~~e~~e~~lp~~~~~~~~---~L~~l~~~l~~a~~~~~ 83 (145)
T PF14942_consen 7 EIHSRLFDHRPVIQGEIRYFVKEFEEKRGDREVRVLENLTEMISETNEHILPRCIELMQQ---NLEQLLERLQAANSMCS 83 (145)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 37888865 89999999999999 443 22333344444333 333333332 22335666677777777
Q ss_pred HHHHHHHHHHh
Q 019853 145 DWYRKAQLALQ 155 (335)
Q Consensus 145 ~~e~rA~~AL~ 155 (335)
....+....-.
T Consensus 84 ~l~~~e~~~~~ 94 (145)
T PF14942_consen 84 RLQQKEQEKQK 94 (145)
T ss_pred HHHHHHHHHhh
Confidence 77666666554
No 354
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=43.71 E-value=2.2e+02 Score=24.71 Aligned_cols=50 Identities=14% Similarity=0.147 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQ 151 (335)
Q Consensus 102 ~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~ 151 (335)
.+|+.-=.....++..++..-..+.......+.++..++.++...-..|+
T Consensus 35 ~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~A~ 84 (164)
T PRK14471 35 GAVKEREDSIKNALASAEEARKEMQNLQADNERLLKEARAERDAILKEAR 84 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555444444444444455554444444444433
No 355
>cd07643 I-BAR_IMD_MIM Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Missing In Metastasis. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. Members of this subfamily include missing in metastasis (MIM) or metastasis suppressor 1 (MTSS1), metastasis suppressor 1-like (MTSSL) or ABBA (Actin-Bundling protein with BAIAP2 homology), and similar proteins. They contain an N-terminal IMD and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. MIM was originally identified as a missing transcript from metastatic bladder and prostate cancer cells. It is a scaffold protein that functions in a signaling pathway between the PDGF receptor, Src kinases, and actin assembly. It may also function as a cofactor of the Sonic hedgehog (Shh) transcriptional pathway and may participate in tumor development and progression via this pathway. ABBA regulate
Probab=43.48 E-value=2.9e+02 Score=26.11 Aligned_cols=51 Identities=12% Similarity=0.183 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 102 KILEQAVLEMNDDLVKMRQATAQVLAS----QKRLENKCKAAEQASEDWYRKAQL 152 (335)
Q Consensus 102 ~~LdQ~Ireme~~L~kar~~lA~v~A~----~k~le~kl~~~~~~~~~~e~rA~~ 152 (335)
.+++..|-.+++.+...++.++++--. .++...++...-...-+|+.+++.
T Consensus 93 ~L~~~lI~pLe~k~E~wkk~~~~ldKd~~k~~kk~R~elKk~~~dt~klqkk~rK 147 (231)
T cd07643 93 ALMDCLVNPLQEKIEEWKKVANQLDKDHAKEYKKARQEIKKKSSDTIRLQKKARK 147 (231)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhc
Confidence 556777777777777777777665433 344444444455555566666665
No 356
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.32 E-value=1.2e+02 Score=23.62 Aligned_cols=45 Identities=13% Similarity=0.120 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 172 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKA 216 (335)
Q Consensus 172 ~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkA 216 (335)
+++.+..|+-.++-+++.++.|...+.+...-|..++.+.+.|.-
T Consensus 6 lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~ 50 (72)
T COG2900 6 LEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTE 50 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555555555555555555444443
No 357
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=42.97 E-value=3.8e+02 Score=27.27 Aligned_cols=13 Identities=0% Similarity=0.054 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 019853 135 KCKAAEQASEDWY 147 (335)
Q Consensus 135 kl~~~~~~~~~~e 147 (335)
+++.++.+.....
T Consensus 45 ~~~~l~~erN~~s 57 (418)
T TIGR00414 45 EIEELQAKRNELS 57 (418)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 358
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=42.86 E-value=6e+02 Score=29.55 Aligned_cols=59 Identities=8% Similarity=0.081 Sum_probs=27.3
Q ss_pred HHHHHHHHhhccCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 86 VKSYANAILSSFEDP-EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRK 149 (335)
Q Consensus 86 ira~in~~ldk~EDP-e~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~r 149 (335)
++..++.+- +-+.| .+.+-|.+++.-.-+.+.+..-.+ .+.+++.++.+-++..+..++
T Consensus 28 iq~~l~~~~-~~~~~~~k~~~~~l~~tl~~l~~~~~~~~~----~~~~~~~i~~ap~~~~~~~~~ 87 (1109)
T PRK10929 28 ITQELEQAK-AAKTPAQAEIVEALQSALNWLEERKGSLER----AKQYQQVIDNFPKLSAELRQQ 87 (1109)
T ss_pred HHHHHHHhh-cCCChhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhHHHHHHHHHH
Confidence 444444432 23445 355555555555555555544433 333444444444444444433
No 359
>PF15112 DUF4559: Domain of unknown function (DUF4559)
Probab=42.82 E-value=3.4e+02 Score=26.73 Aligned_cols=129 Identities=19% Similarity=0.221 Sum_probs=71.4
Q ss_pred hHHHHHHHHHHHHHHHhhccCCHH-HHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 78 LFDRLARVVKSYANAILSSFEDPE-KILEQAVLEMN-----------DDLVKMRQATAQVLASQKRLENKCKAAEQASED 145 (335)
Q Consensus 78 if~Rl~~lira~in~~ldk~EDPe-~~LdQ~Ireme-----------~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~ 145 (335)
-|.++...|...++. -.-+|+ ....+.|.++. ++....+..+-........++...+.+++.+.+
T Consensus 164 wm~~~~~~i~nll~~---f~~ipe~~~a~~~Ie~ll~~d~~v~~~~~d~~Dg~~~~~~~~~~~~~i~e~e~e~Lke~lqe 240 (307)
T PF15112_consen 164 WMRDFQMKIQNLLNE---FRNIPEIVAAGSRIEQLLTSDWAVHIPEEDQRDGCESETDVYLSESQILEIEMELLKEKLQE 240 (307)
T ss_pred HHHHHHHHHHHHHHH---hccChHHHHHHHHHHHHHhhhhhhcCchhhccchhhhccchhhhHHHHHHHHHHHHHHHHHH
Confidence 344444444444441 223674 55566666665 455555555666666677788888888888888
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 146 WYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKK 211 (335)
Q Consensus 146 ~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr 211 (335)
...+|..-...+++++ ..+.-...+-..=..|...+...-+.++.|..++.+++..|.+++.+.
T Consensus 241 l~~~~e~~~~~~ee~~--~~l~~~~~fL~~NkDL~~~l~~e~qkL~~l~~k~~~~~~~v~~~~~~~ 304 (307)
T PF15112_consen 241 LYLQAEEQEVLPEEDS--KRLEVLKEFLRNNKDLRSNLQEELQKLDSLQTKHQKLESDVKELKSQM 304 (307)
T ss_pred HHHHHhhccccchhhh--HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHhhc
Confidence 8777766544443322 223333333333344444444444555556666666666666655543
No 360
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=42.78 E-value=2.9e+02 Score=25.91 Aligned_cols=52 Identities=17% Similarity=0.297 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCcHH
Q 019853 109 LEMNDDLVKMRQATAQVLASQKRLENKC-KAAEQASEDWYRKAQLALQKGEED 160 (335)
Q Consensus 109 reme~~L~kar~~lA~v~A~~k~le~kl-~~~~~~~~~~e~rA~~AL~~G~Ed 160 (335)
.+.+..|.+++...+.+++..+.-..++ .++..+...|...+..-+..++.+
T Consensus 40 ~~~~~~l~~Ar~eA~~Ii~~A~~~a~~~~~~~~~~~~~~~~e~e~~~e~A~~e 92 (255)
T TIGR03825 40 QEFEQILEKAEAEAAQIIEQAEAQAAAIREQIEQERAQWEEERERLIQEAKQE 92 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666777777666666655533333 455556677777766666655554
No 361
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=42.13 E-value=5.5e+02 Score=28.88 Aligned_cols=182 Identities=15% Similarity=0.173 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Q 019853 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAE---QASEDWYRKAQLALQKGEEDLAREALKRRKSYADNAN 177 (335)
Q Consensus 101 e~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~---~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~ 177 (335)
-....+.||+.-.+-..+. .+....+....++++|.+.+ ....++..++...+.+ .+.-.....++..++
T Consensus 495 ~~~A~~llR~~p~q~~~aq-~~~~lr~~l~eLEqr~~qQqsa~~Ll~~f~kr~~~~l~a------e~lE~~~~e~eal~E 567 (1480)
T COG3096 495 WDVARELLREGPDQRHLAE-QVQPLRMRLSELEQRLRQQQSAERLLADFCKRQGKNLDA------EELEALHQELEALIE 567 (1480)
T ss_pred HHHHHHHHHhChhhHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCH------HHHHHHHHHHHHHHH
Confidence 3566777777776655543 35666677777888877644 4455666666666652 222223455677788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhHHHHH
Q 019853 178 ALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMESQA 257 (335)
Q Consensus 178 ~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~~~AkAq~~v~~~~~~~~~~~a~~~feRmEeki~~~EA~A 257 (335)
.+...+..+..+-..|+.....|..+|+++..+--.+.+-. .|-.++.+..+. ...+..+-++-|.......-...
T Consensus 568 ~ls~~~s~~~EqR~~lRq~~e~L~~~~~~~~~~AP~Wl~Aq---~ALe~L~eQSGe-~~~dSq~V~~~MQ~~L~~Ere~t 643 (1480)
T COG3096 568 SLSDSVSNAREQRMALRQEQEQLQSRIQSLMQRAPVWLAAQ---NALEQLSEQSGE-EFTDSQDVTEYMQQLLEREREAT 643 (1480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHH---HHHHHHHHhhhh-hhcchHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888777665554321 222333333322 12233344444444333222222
Q ss_pred HHhhccc--CCChhHHHhhhccC--CHHHHHHHHHHHcCC
Q 019853 258 DSLNQLT--TDDLEGKFALLETS--SVDDDLANLKKELSG 293 (335)
Q Consensus 258 eA~~eL~--~~~Le~k~a~le~~--~vddeLa~LKa~l~~ 293 (335)
-.-++|. ...||.++.-|.++ +-|..|..|-...|+
T Consensus 644 ~~rD~l~~~r~~ld~qI~RLsqP~GseD~RL~~LAerfGG 683 (1480)
T COG3096 644 VERDELGARKNALDEEIERLSQPGGSEDQRLNALAERFGG 683 (1480)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcc
Confidence 2222332 23567777766643 467778877777766
No 362
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.05 E-value=1.6e+02 Score=22.81 Aligned_cols=36 Identities=25% Similarity=0.418 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 172 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEA 207 (335)
Q Consensus 172 ~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~ 207 (335)
.+..++.|...+.++...++++..+++-|-.|+.++
T Consensus 20 QE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~ 55 (72)
T COG2900 20 QEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDL 55 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455566666666666666666666666666666554
No 363
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=41.94 E-value=3.7e+02 Score=26.84 Aligned_cols=14 Identities=14% Similarity=0.090 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q 019853 107 AVLEMNDDLVKMRQ 120 (335)
Q Consensus 107 ~Ireme~~L~kar~ 120 (335)
.+...+.++..++.
T Consensus 100 ~l~~A~a~l~~a~~ 113 (390)
T PRK15136 100 AFEKAKTALANSVR 113 (390)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444333
No 364
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=41.92 E-value=1.4e+02 Score=21.86 Aligned_cols=32 Identities=16% Similarity=0.290 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 177 NALKAQLDQQKNVVNNLVSNTRLLESKIQEAR 208 (335)
Q Consensus 177 ~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k 208 (335)
..|+..+..+......|...+..|+..+..++
T Consensus 29 ~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~ 60 (64)
T PF00170_consen 29 EELEEKVEELESENEELKKELEQLKKEIQSLK 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444443
No 365
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=41.86 E-value=2.4e+02 Score=24.78 Aligned_cols=14 Identities=7% Similarity=0.425 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q 019853 110 EMNDDLVKMRQATA 123 (335)
Q Consensus 110 eme~~L~kar~~lA 123 (335)
++.+++.+....+.
T Consensus 92 ~l~~el~~l~~~~~ 105 (191)
T PF04156_consen 92 QLQEELDQLQERIQ 105 (191)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 366
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=41.80 E-value=3.3e+02 Score=26.27 Aligned_cols=72 Identities=28% Similarity=0.430 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Q 019853 172 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVL 251 (335)
Q Consensus 172 ~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~~~AkAq~~v~~~~~~~~~~~a~~~feRmEeki~ 251 (335)
....+..+..++++.+..+..+..+-..|+.||+.-+..++-..-|..+-+ ++.+ --++.++++|+...
T Consensus 167 l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq----------~vRP-AfmdEyEklE~EL~ 235 (267)
T PF10234_consen 167 LKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQ----------SVRP-AFMDEYEKLEEELQ 235 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hcCh-HHHHHHHHHHHHHH
Confidence 344556666667777777777777777777777777776665555544432 1211 12577888887766
Q ss_pred hHH
Q 019853 252 TME 254 (335)
Q Consensus 252 ~~E 254 (335)
.+.
T Consensus 236 ~lY 238 (267)
T PF10234_consen 236 KLY 238 (267)
T ss_pred HHH
Confidence 544
No 367
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=41.55 E-value=3.8e+02 Score=26.89 Aligned_cols=51 Identities=8% Similarity=0.123 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 171 SYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSA 221 (335)
Q Consensus 171 ~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~~~A 221 (335)
.+..-...+...++........+..++..+-..+...+.++..+..+++.+
T Consensus 242 ~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~ 292 (359)
T PF10498_consen 242 QLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQA 292 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555566666666666666666666666666666666555555544
No 368
>PF13763 DUF4167: Domain of unknown function (DUF4167)
Probab=41.48 E-value=1.5e+02 Score=23.48 Aligned_cols=43 Identities=28% Similarity=0.279 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 139 AEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKA 181 (335)
Q Consensus 139 ~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~le~ 181 (335)
++..++||..-|..|+..||--+|.-.++--..|-.-+...+.
T Consensus 35 A~ql~EKY~~LArDA~ssGDrV~aEny~QHAeHY~Ril~~~~~ 77 (80)
T PF13763_consen 35 AQQLIEKYNQLARDAQSSGDRVLAENYLQHAEHYFRILAAAQA 77 (80)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999999999999998888887777665544
No 369
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=41.36 E-value=90 Score=29.65 Aligned_cols=106 Identities=15% Similarity=0.212 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHH-------------hcCcHHHHH
Q 019853 110 EMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWY-------------RKAQLAL-------------QKGEEDLAR 163 (335)
Q Consensus 110 eme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e-------------~rA~~AL-------------~~G~EdLAr 163 (335)
+++.++..+...+.+....-.+||..+...+.....-. ....... ..++..+--
T Consensus 3 ~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~~~~~siLp 82 (248)
T PF08172_consen 3 ELQKELSELEAKLEEQKELNAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGGGGDSSILP 82 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCCCCCCccCCCCCCcccHHH
Confidence 45556666666666555555666666666654411110 0000000 024445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 164 EALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (335)
Q Consensus 164 eAL~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~Lk 215 (335)
-.-.++-.+.....+|++++..+.+.+..|+..+..|++.=-.+.-|..-|.
T Consensus 83 IVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylq 134 (248)
T PF08172_consen 83 IVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQ 134 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5666777777788888888888888888887777777776666666665543
No 370
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=41.24 E-value=2.9e+02 Score=27.01 Aligned_cols=18 Identities=6% Similarity=0.213 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019853 110 EMNDDLVKMRQATAQVLA 127 (335)
Q Consensus 110 eme~~L~kar~~lA~v~A 127 (335)
+.+.++.+++..+.++.+
T Consensus 96 ~~~~~~~~~~a~l~~~~~ 113 (370)
T PRK11578 96 QAENQIKEVEATLMELRA 113 (370)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 355555555544443333
No 371
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=41.19 E-value=3.5e+02 Score=26.44 Aligned_cols=23 Identities=17% Similarity=0.172 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019853 102 KILEQAVLEMNDDLVKMRQATAQ 124 (335)
Q Consensus 102 ~~LdQ~Ireme~~L~kar~~lA~ 124 (335)
.-+++.+.+++..+.+++..+..
T Consensus 173 ~fl~~ql~~~~~~l~~ae~~l~~ 195 (362)
T TIGR01010 173 AFAENEVKEAEQRLNATKAELLK 195 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433
No 372
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=41.17 E-value=4e+02 Score=27.07 Aligned_cols=82 Identities=16% Similarity=0.187 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH--HHHHHHHHHHHhcCCCCCcHHHHHHH
Q 019853 170 KSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSK--KDTLKARAQ--SAKTATKVSEMLGNVNTSSALSAFEK 245 (335)
Q Consensus 170 ~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~k--r~~LkAr~~--~AkAq~~v~~~~~~~~~~~a~~~feR 245 (335)
..++.+...+...+.+.+....++..++..|+.++.++... .+.+.+... .--|..++ .-.-+...|...|+-
T Consensus 88 ~~l~~~~~~~~~~l~~~e~~~~~l~~q~~~Lq~~~~~ls~~~~~dWlLaEaeyLlrlA~qkL---~l~~Dv~tA~alLks 164 (390)
T PRK10920 88 QELEGILKQQAKALDQANRQQAALAKQLDELQQKVATISGSDAKTWLLAQADFLVKLAGRKL---WSDQDVTTAAALLKS 164 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHH---HHcCCHHHHHHHHHH
Confidence 44555666666666667777777777777788888777633 344443322 22222222 112245667777777
Q ss_pred HHHHHHhHH
Q 019853 246 MEEKVLTME 254 (335)
Q Consensus 246 mEeki~~~E 254 (335)
..+++.++.
T Consensus 165 AD~rLa~~~ 173 (390)
T PRK10920 165 ADASLADMN 173 (390)
T ss_pred HHHHHHhcC
Confidence 777766543
No 373
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=41.04 E-value=1.3e+02 Score=25.95 Aligned_cols=42 Identities=14% Similarity=0.231 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 166 LKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEA 207 (335)
Q Consensus 166 L~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~ 207 (335)
+..+..+|.+-..|.++++.+...+..+...+..++.|++.+
T Consensus 73 v~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l 114 (135)
T KOG4196|consen 73 VQQKHELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEAL 114 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666666666666666555555555544
No 374
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=41.00 E-value=1.7e+02 Score=22.70 Aligned_cols=29 Identities=21% Similarity=0.334 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 181 AQLDQQKNVVNNLVSNTRLLESKIQEARS 209 (335)
Q Consensus 181 ~qle~~~~~v~~Lk~~l~~Le~ki~e~k~ 209 (335)
.+.+-+...+.+++..+..|+.++..++.
T Consensus 50 EEFd~q~~~L~~~r~kl~~LEarl~~LE~ 78 (79)
T PF04380_consen 50 EEFDAQKAVLARTREKLEALEARLAALEA 78 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44455566666666777777777766653
No 375
>PRK07737 fliD flagellar capping protein; Validated
Probab=40.95 E-value=2.1e+02 Score=29.80 Aligned_cols=24 Identities=13% Similarity=0.257 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 172 YADNANALKAQLDQQKNVVNNLVS 195 (335)
Q Consensus 172 ~e~q~~~le~qle~~~~~v~~Lk~ 195 (335)
|..|...++..+.++..+-.-|..
T Consensus 471 y~~qf~ale~~~s~mnsq~s~L~~ 494 (501)
T PRK07737 471 YYKKFSAMEKAIQKANEQSMYLMN 494 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555444433
No 376
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=40.61 E-value=3e+02 Score=25.37 Aligned_cols=115 Identities=14% Similarity=0.186 Sum_probs=74.4
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Q 019853 88 SYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALK 167 (335)
Q Consensus 88 a~in~~ldk~EDPe~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~ 167 (335)
+.+...++.+||--.-|--.|.++..++.-..+++- ..|-++..++.+...+..++......+.. ++..=.
T Consensus 25 ~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~----~aK~l~eEledLk~~~~~lEE~~~~L~aq-----~rqlEk 95 (193)
T PF14662_consen 25 AKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQ----KAKALEEELEDLKTLAKSLEEENRSLLAQ-----ARQLEK 95 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHH
Confidence 345566677777766677777777777766654444 45556666667777777666666654443 344555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 168 RRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKK 211 (335)
Q Consensus 168 rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr 211 (335)
+.+.+...+..|+.+-.......+.++.....|-.+...++.+.
T Consensus 96 E~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql 139 (193)
T PF14662_consen 96 EQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQL 139 (193)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHH
Confidence 56666777777777777777777777777777766666666666
No 377
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=40.42 E-value=1.9e+02 Score=22.99 Aligned_cols=39 Identities=18% Similarity=0.261 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 190 VNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVS 228 (335)
Q Consensus 190 v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~~~AkAq~~v~ 228 (335)
++++...+.+.+.||.+++.++..|.++..-+.-..-+.
T Consensus 3 leKi~~eieK~k~Kiae~Q~rlK~Le~qk~E~EN~EIv~ 41 (83)
T PF14193_consen 3 LEKIRAEIEKTKEKIAELQARLKELEAQKTEAENLEIVQ 41 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777777777777766665554443
No 378
>PF14282 FlxA: FlxA-like protein
Probab=40.40 E-value=2e+02 Score=23.45 Aligned_cols=17 Identities=24% Similarity=0.417 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019853 177 NALKAQLDQQKNVVNNL 193 (335)
Q Consensus 177 ~~le~qle~~~~~v~~L 193 (335)
..|+.++..+...+..|
T Consensus 22 ~~L~~Qi~~Lq~ql~~l 38 (106)
T PF14282_consen 22 EQLQKQIKQLQEQLQEL 38 (106)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 379
>PRK15396 murein lipoprotein; Provisional
Probab=40.12 E-value=1.8e+02 Score=22.80 Aligned_cols=51 Identities=18% Similarity=0.296 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 019853 182 QLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNV 234 (335)
Q Consensus 182 qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~~~AkAq~~v~~~~~~~ 234 (335)
+++++..+|..|..++.++...+..++..... +....++|-+++.....++
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~--a~~eA~raN~RlDn~~~sy 76 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQA--AKDDAARANQRLDNQATKY 76 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhc
No 380
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=40.11 E-value=1.9e+02 Score=28.77 Aligned_cols=14 Identities=7% Similarity=0.026 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q 019853 112 NDDLVKMRQATAQV 125 (335)
Q Consensus 112 e~~L~kar~~lA~v 125 (335)
+.++.+++..++.+
T Consensus 102 ~~~l~~a~A~l~~A 115 (397)
T PRK15030 102 QATYDSAKGDLAKA 115 (397)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444433
No 381
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=40.09 E-value=3.3e+02 Score=25.72 Aligned_cols=32 Identities=22% Similarity=0.264 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHhhccCCH-HHHHHHHHHH
Q 019853 79 FDRLARVVKSYANAILSSFEDP-EKILEQAVLE 110 (335)
Q Consensus 79 f~Rl~~lira~in~~ldk~EDP-e~~LdQ~Ire 110 (335)
..||..+-......+-..+-+| ...|+..|.+
T Consensus 90 ~~~ia~~~~~~d~~i~~~fl~pL~~~le~dik~ 122 (244)
T cd07595 90 QNTLARELVDHEMNVEEDVLSPLQNILEVEIPN 122 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555566 2455444333
No 382
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=40.05 E-value=1.2e+02 Score=30.43 Aligned_cols=43 Identities=14% Similarity=0.350 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 167 KRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARS 209 (335)
Q Consensus 167 ~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~ 209 (335)
.|...+++.+..++..+....+.+..+...+..++.++.++.+
T Consensus 144 ~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEn 186 (370)
T PF02994_consen 144 SRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLEN 186 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 4555566666666666665555555555555555555554433
No 383
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=40.01 E-value=3.8e+02 Score=26.43 Aligned_cols=115 Identities=18% Similarity=0.235 Sum_probs=55.2
Q ss_pred HHHHHHHHHh---hccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHH
Q 019853 85 VVKSYANAIL---SSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDL 161 (335)
Q Consensus 85 lira~in~~l---dk~EDPe~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdL 161 (335)
.++.-++.+. +.+|+++.+| |.|+-.++..+...++.+--.--+-.......+++|..+
T Consensus 178 ~LR~Ea~~L~~et~~~EekEqqL---v~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~L--------------- 239 (306)
T PF04849_consen 178 QLRSEASQLKTETDTYEEKEQQL---VLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSL--------------- 239 (306)
T ss_pred HHHHHHHHhhHHHhhccHHHHHH---HHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHH---------------
Confidence 4555555554 2445555444 777777777777766554322222222222333333332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 162 AREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSA 221 (335)
Q Consensus 162 AreAL~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~~~A 221 (335)
+.+...++.....+-..-+.+...+...+..-..|...+.+++.|.....+...-+
T Consensus 240 ----lsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~Ea 295 (306)
T PF04849_consen 240 ----LSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEA 295 (306)
T ss_pred ----HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333334444444444444444555555555555555555555555555444333
No 384
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=39.92 E-value=2.8e+02 Score=31.62 Aligned_cols=82 Identities=17% Similarity=0.200 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Q 019853 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQA--SEDWYRKAQLALQKGEEDLAREALKRRKSYADNANAL 179 (335)
Q Consensus 102 ~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~--~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~l 179 (335)
..|+--+.|.--+|.+....+|++++.++.+++++-..-.- --.+.+-.+.+++...+.+=+..-+....-|.+...+
T Consensus 872 ~qln~p~ed~~~~l~~qQe~~a~l~~sQ~el~~~l~~ql~g~le~~l~~~iEk~lks~~d~~~~rl~e~la~~e~~~r~~ 951 (1283)
T KOG1916|consen 872 QQLNHPMEDLLPQLLAQQETMAQLMASQKELQRQLSNQLTGPLEVALGRMIEKSLKSNADALWARLQEELAKNEKALRDL 951 (1283)
T ss_pred hhhcCChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhHH
Confidence 33333344455556666777888888888888876532211 1223334444555555444433333333333333334
Q ss_pred HHHH
Q 019853 180 KAQL 183 (335)
Q Consensus 180 e~ql 183 (335)
++++
T Consensus 952 ~~qi 955 (1283)
T KOG1916|consen 952 QQQI 955 (1283)
T ss_pred HHHH
Confidence 3333
No 385
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=39.85 E-value=3.4e+02 Score=25.81 Aligned_cols=121 Identities=16% Similarity=0.237 Sum_probs=63.2
Q ss_pred hHHHHHHHHHHHHHHHhhccC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 78 LFDRLARVVKSYANAILSSFE----------DPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWY 147 (335)
Q Consensus 78 if~Rl~~lira~in~~ldk~E----------DPe~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e 147 (335)
+-+||+.-+++.+..+ +++- ||+.+= .+++..|..+--..-+-+-....++..+.++..+.+...
T Consensus 74 LA~kf~eeLrg~VGhi-ERmK~PiGHDvEhiD~elvr----kEl~nAlvRAGLktL~~v~~~~d~ke~~ee~kekl~E~~ 148 (290)
T COG4026 74 LAEKFFEELRGMVGHI-ERMKIPIGHDVEHIDVELVR----KELKNALVRAGLKTLQRVPEYMDLKEDYEELKEKLEELQ 148 (290)
T ss_pred HHHHHHHHHHHhhhhh-heeccCCCCCccccCHHHHH----HHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHH
Confidence 6777777777766543 3332 443322 244555554443333333344445555555555444332
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 148 RKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (335)
Q Consensus 148 ~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~Lk 215 (335)
. -+++ .+.+...++..++..+..+..+......|...+..+..++..++.+.+.|-
T Consensus 149 ~--------Ekee----L~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe 204 (290)
T COG4026 149 K--------EKEE----LLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELE 204 (290)
T ss_pred H--------HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhc
Confidence 1 1221 233344455556666666666666666666666666666666666655543
No 386
>PRK10807 paraquat-inducible protein B; Provisional
Probab=39.63 E-value=3.5e+02 Score=28.68 Aligned_cols=46 Identities=11% Similarity=0.174 Sum_probs=28.0
Q ss_pred cccccCchHHHHHHHHHHHHHHHhhccCC-HHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 71 ALNTRMNLFDRLARVVKSYANAILSSFED-PEKILEQAVLEMNDDLVKMRQATA 123 (335)
Q Consensus 71 ~~~~~Msif~Rl~~lira~in~~ldk~ED-Pe~~LdQ~Ireme~~L~kar~~lA 123 (335)
.+-+..|-|..+. ..++.++++++. | |++.+.++...|..++..+.
T Consensus 407 vIPt~ps~l~~l~----~~~~~il~kin~lp---le~i~~~l~~tL~~~~~tl~ 453 (547)
T PRK10807 407 IIPTVSGGLAQIQ----QKLMEALDKINNLP---LNPMIEQATSTLSESQRTMR 453 (547)
T ss_pred eeecCCCCHHHHH----HHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHHHH
Confidence 3446667777664 577778888774 4 55555555555555555443
No 387
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=39.58 E-value=1.7e+02 Score=22.40 Aligned_cols=43 Identities=19% Similarity=0.209 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 173 ADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (335)
Q Consensus 173 e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~Lk 215 (335)
..++..|...-+.+.....++...+.+|..++.+.......+.
T Consensus 11 De~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~ 53 (74)
T PF12329_consen 11 DEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELK 53 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444555555555555555444444444
No 388
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=39.47 E-value=2.6e+02 Score=24.47 Aligned_cols=13 Identities=23% Similarity=0.442 Sum_probs=10.4
Q ss_pred CHHHHHHHHHHHc
Q 019853 279 SVDDDLANLKKEL 291 (335)
Q Consensus 279 ~vddeLa~LKa~l 291 (335)
.+++.|..||..-
T Consensus 120 Gldeqi~~lkes~ 132 (155)
T PF06810_consen 120 GLDEQIKALKESD 132 (155)
T ss_pred cHHHHHHHHHhcC
Confidence 5899999999754
No 389
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=39.39 E-value=1.1e+02 Score=32.71 Aligned_cols=18 Identities=17% Similarity=0.170 Sum_probs=10.6
Q ss_pred CCCccccccc--cccccccc
Q 019853 25 SSSSSLCMVK--KPLTTSFF 42 (335)
Q Consensus 25 ~~~~~~~~~~--~~l~~~~~ 42 (335)
++.+.+|+++ .-+..+||
T Consensus 13 gn~s~~~~lR~S~~~r~~w~ 32 (907)
T KOG2264|consen 13 GNGSFVPSLRVSAFLRFIWF 32 (907)
T ss_pred CCCCcCeeeeehhhHHHHHH
Confidence 3446667776 22666666
No 390
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=39.25 E-value=3.8e+02 Score=26.26 Aligned_cols=28 Identities=18% Similarity=0.299 Sum_probs=22.2
Q ss_pred CCChhHHHhhhcc--CCHHHHHHHHHHHcC
Q 019853 265 TDDLEGKFALLET--SSVDDDLANLKKELS 292 (335)
Q Consensus 265 ~~~Le~k~a~le~--~~vddeLa~LKa~l~ 292 (335)
..+||.++..+.. ....+++..||.+|.
T Consensus 214 ~g~LDvRLkKl~~eke~L~~qv~klk~qLe 243 (302)
T PF09738_consen 214 DGSLDVRLKKLADEKEELLEQVRKLKLQLE 243 (302)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999998864 467888899998884
No 391
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=39.20 E-value=4.3e+02 Score=26.80 Aligned_cols=34 Identities=12% Similarity=0.229 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019853 122 TAQVLASQKRLENKCKAAEQASEDWYRKAQLALQ 155 (335)
Q Consensus 122 lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~ 155 (335)
+..+...-..++..+..+-+....+.++-..|+.
T Consensus 194 ~~~i~~~l~~le~ema~lL~sLt~HfDqC~~a~~ 227 (412)
T PF04108_consen 194 MSTILKELHSLEQEMASLLESLTNHFDQCVTAVR 227 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677788999999999999999999999999
No 392
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=39.07 E-value=4.2e+02 Score=26.65 Aligned_cols=35 Identities=17% Similarity=0.242 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 159 EDLAREALKRRKSYADNANALKAQLDQQKNVVNNL 193 (335)
Q Consensus 159 EdLAreAL~rk~~~e~q~~~le~qle~~~~~v~~L 193 (335)
|.+-+.+=++...++-+++.+..+.-+-+....+|
T Consensus 133 E~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~L 167 (401)
T PF06785_consen 133 EGLIRHLREENQCLQLQLDALQQECGEKEEESQTL 167 (401)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHH
Confidence 34444444444444444444444443333333333
No 393
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=38.99 E-value=2.8e+02 Score=24.58 Aligned_cols=85 Identities=11% Similarity=0.107 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHHHHHHhhccCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 78 LFDRLARVVKSYANAILSSFED---PEKILEQAVLEMNDDLVKMRQATAQVLAS-QKRLENKCKAAEQASEDWYRKAQLA 153 (335)
Q Consensus 78 if~Rl~~lira~in~~ldk~ED---Pe~~LdQ~Ireme~~L~kar~~lA~v~A~-~k~le~kl~~~~~~~~~~e~rA~~A 153 (335)
+|.++.+++..+-..+-+.++. -..-.+....+.++.|.+++....++..+ ...+. .+...+....+......
T Consensus 31 ~~ppI~~iLe~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~---a~~~~~~~~~ea~L~~~ 107 (155)
T PRK06569 31 ITPKAEEIFNNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLE---SEFLIKKKNLEQDLKNS 107 (155)
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 5777777776655444444433 23445555555666666666555554443 22222 23333444445555555
Q ss_pred HhcCcHHHHHHH
Q 019853 154 LQKGEEDLAREA 165 (335)
Q Consensus 154 L~~G~EdLAreA 165 (335)
|..+..+.=..+
T Consensus 108 ~~~~~~~~~~~~ 119 (155)
T PRK06569 108 INQNIEDINLAA 119 (155)
T ss_pred HHHHHHHHHHHH
Confidence 555555554444
No 394
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.94 E-value=4.8e+02 Score=27.28 Aligned_cols=66 Identities=15% Similarity=0.140 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 128 SQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVS 195 (335)
Q Consensus 128 ~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~le~qle~~~~~v~~Lk~ 195 (335)
...+++-...+++ ...++..++..+|.-|..-||+-- ........++..+.++|+....-..+=+.
T Consensus 263 ~~sq~~e~~selE-~llklkerl~e~l~dgeayLaKL~-~~l~~~~~~~~~ltqqwed~R~pll~kkl 328 (521)
T KOG1937|consen 263 KRSQFEEQNSELE-KLLKLKERLIEALDDGEAYLAKLM-GKLAELNKQMEELTQQWEDTRQPLLQKKL 328 (521)
T ss_pred hhHHHHHHHHHHH-HHHHhHHHHHHhcCChHhHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3334444444444 677788889999999999998643 44566667777888888876655544333
No 395
>PF07445 priB_priC: Primosomal replication protein priB and priC; InterPro: IPR010890 This family contains the bacterial primosomal replication proteins priB and priC (approximately 180 residues long). In Escherichia coli, these function in the assembly of the primosome [].
Probab=38.89 E-value=2.8e+02 Score=24.67 Aligned_cols=46 Identities=15% Similarity=0.163 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Q 019853 102 KILEQAVLEMNDDLVKMRQATAQV-----LASQKRLENKCKAAEQASEDWY 147 (335)
Q Consensus 102 ~~LdQ~Ireme~~L~kar~~lA~v-----~A~~k~le~kl~~~~~~~~~~e 147 (335)
..|--||.|++..+..+.+.+..- .-.-.++-.++..+...+..|.
T Consensus 40 ~~L~~yl~Ei~~~l~~L~~~~~~~~~~~~~~laEkL~~Q~~AL~r~l~t~~ 90 (173)
T PF07445_consen 40 QRLSDYLQEIEQTLAQLQQQVEQNRLQQVAFLAEKLVAQIEALQRELATQS 90 (173)
T ss_pred chHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345566667777777766665432 2233345555666666665554
No 396
>COG1345 FliD Flagellar capping protein [Cell motility and secretion]
Probab=38.66 E-value=1.9e+02 Score=30.21 Aligned_cols=77 Identities=6% Similarity=0.126 Sum_probs=53.6
Q ss_pred ccccCchHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 72 LNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQ 151 (335)
Q Consensus 72 ~~~~Msif~Rl~~lira~in~~ldk~EDPe~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~ 151 (335)
.+..+||=+++...+...++..+.-+.+-..-|+-.|..+..++..+.+.+.. .+.++..++..++..+.++..+..
T Consensus 395 d~~~~Gia~~l~~~l~s~~~~t~g~i~~~~~~l~~~i~~l~~~i~~~~~rl~~---~e~~~~~qf~~m~~~~~~m~sq~~ 471 (483)
T COG1345 395 DGKDTGIAKTLGEGLNSLLAVTGGIITGRTDSLNKQIKSLDKDIKSLDKRLEA---AEERYKTQFNTLDDMMTQMNSQSS 471 (483)
T ss_pred CccccchHHHHhhhhHHHHhhccceeeccccchhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888899988888888877666666666777777777776666665543 455666677777766666665554
No 397
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=38.55 E-value=4e+02 Score=26.52 Aligned_cols=48 Identities=15% Similarity=0.151 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 168 RRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (335)
Q Consensus 168 rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~Lk 215 (335)
+-.+++++..++++......+..+++......--+.|..-+.+...++
T Consensus 5 EW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~ 52 (330)
T PF07851_consen 5 EWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELK 52 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444443333333333
No 398
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=38.45 E-value=2.2e+02 Score=23.28 Aligned_cols=103 Identities=20% Similarity=0.181 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 109 LEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKN 188 (335)
Q Consensus 109 reme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~le~qle~~~~ 188 (335)
..++..|..-+..+...+..-..-+..+...+..+..--.+-...|..++. -...|+.+...-..........+..+..
T Consensus 10 ~~~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~-k~~rA~k~a~~e~k~~~~k~~ei~~l~~ 88 (126)
T PF13863_consen 10 FLVQLALDTKREEIERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEA-KRERAEKRAEEEKKKKEEKEAEIKKLKA 88 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433333334444444443333333444444433 2233545555555555556666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 189 VVNNLVSNTRLLESKIQEARSKKD 212 (335)
Q Consensus 189 ~v~~Lk~~l~~Le~ki~e~k~kr~ 212 (335)
.+..|+..+..++.++..++-=.+
T Consensus 89 ~l~~l~~~~~k~e~~l~~~~~Y~~ 112 (126)
T PF13863_consen 89 ELEELKSEISKLEEKLEEYKKYEE 112 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666544333
No 399
>PRK12472 hypothetical protein; Provisional
Probab=38.33 E-value=5e+02 Score=27.34 Aligned_cols=96 Identities=21% Similarity=0.206 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 116 VKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKG-EEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLV 194 (335)
Q Consensus 116 ~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G-~EdLAreAL~rk~~~e~q~~~le~qle~~~~~v~~Lk 194 (335)
....+.++.+.+.-..+|+...+...+.. .|..+|.+- .++--..|..+++..+.++.....+++..+...+.-.
T Consensus 214 ~~~~~~~~~~~~~l~~~e~~~~~a~~~l~----~adk~l~~a~~d~~~~~a~~~~~~~~~~~~~a~~~~~~a~~~~~~~~ 289 (508)
T PRK12472 214 AAAAREAAPLKASLRKLERAKARADAELK----RADKALAAAKTDEAKARAEERQQKAAQQAAEAATQLDTAKADAEAKR 289 (508)
T ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHHHH----HHHHHHHhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 33333444444444444444444444333 333333333 2333334556888889999888888888888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019853 195 SNTRLLESKIQEARSKKDTLK 215 (335)
Q Consensus 195 ~~l~~Le~ki~e~k~kr~~Lk 215 (335)
......+.....+..++.+..
T Consensus 290 ~~~~~~~~a~~~a~~~~~~~~ 310 (508)
T PRK12472 290 AAAAATKEAAKAAAAKKAETA 310 (508)
T ss_pred HHHHHHHHHHHHHHHhhhHHH
Confidence 777776666666666665543
No 400
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=38.28 E-value=85 Score=29.88 Aligned_cols=59 Identities=22% Similarity=0.273 Sum_probs=29.0
Q ss_pred chHHHHHHHHHHHHHHHhhccCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 77 NLFDRLARVVKSYANAILSSFEDP--EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQAS 143 (335)
Q Consensus 77 sif~Rl~~lira~in~~ldk~EDP--e~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~ 143 (335)
+||.||+.+=.. --|| +.+|.+.|+.-=+..--+-+.+--.-..-++++.++++++.++
T Consensus 11 ~lf~RL~~ae~~--------prD~eAe~lI~~~~~~qP~A~Y~laQ~vlvQE~AL~~a~~ri~eLe~ql 71 (247)
T PF09849_consen 11 DLFSRLKQAEAQ--------PRDPEAEALIAQALARQPDAPYYLAQTVLVQEQALKQAQARIQELEAQL 71 (247)
T ss_pred HHHHHHHhccCC--------CCCHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666642211 2377 4777777666555554444444333333344444444444443
No 401
>PF15456 Uds1: Up-regulated During Septation
Probab=38.18 E-value=2.5e+02 Score=23.84 Aligned_cols=93 Identities=22% Similarity=0.289 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHH
Q 019853 161 LAREALKRRKSYA----DNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQ---------SAKTATKV 227 (335)
Q Consensus 161 LAreAL~rk~~~e----~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~~---------~AkAq~~v 227 (335)
|+..|+..-..|+ ++++.++.++..+...++.++.++. ++.|+.++-..+..+-.... ..++...+
T Consensus 5 L~~tAl~ds~~feiLs~eEVe~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~sl~~l~~~~~~~~~~~~~~~~~~eeel 83 (124)
T PF15456_consen 5 LTETALGDSKEFEILSFEEVEELKKELRSLDSRLEYLRRKLA-LESKIRDAAHSLSRLYSSSSRRARFSRESSLKAEEEL 83 (124)
T ss_pred HHHHHHHHHHcCcccCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHH
Q ss_pred HHHhcCCCCCcHHHHHHHHHHHHHhHHHH
Q 019853 228 SEMLGNVNTSSALSAFEKMEEKVLTMESQ 256 (335)
Q Consensus 228 ~~~~~~~~~~~a~~~feRmEeki~~~EA~ 256 (335)
......+ +.....|.++|.+.....-+
T Consensus 84 ~~~~rk~--ee~~~eL~~le~R~~~~~~r 110 (124)
T PF15456_consen 84 AESDRKC--EELAQELWKLENRLAEVRQR 110 (124)
T ss_pred HHHHhhH--HHHHHHHHHHHHHHHHHHHH
No 402
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=37.98 E-value=3.5e+02 Score=25.41 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 130 KRLENKCKAAEQASEDWYRKAQLAL 154 (335)
Q Consensus 130 k~le~kl~~~~~~~~~~e~rA~~AL 154 (335)
+.+-.+++.+..+-..+..+.+.++
T Consensus 147 ~~ll~~l~~l~~eR~~~~~~lk~~~ 171 (296)
T PF13949_consen 147 RELLNKLEELKKEREELLEQLKEKL 171 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555433
No 403
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=37.51 E-value=3.6e+02 Score=27.46 Aligned_cols=32 Identities=9% Similarity=0.141 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019853 125 VLASQKRLENKCKAAEQASEDWYRKAQLALQK 156 (335)
Q Consensus 125 v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~ 156 (335)
+-..++.+..+++.++.+.....+....+...
T Consensus 33 ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~ 64 (425)
T PRK05431 33 LDEERRELQTELEELQAERNALSKEIGQAKRK 64 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33345555555666666665555555443333
No 404
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=37.06 E-value=2.9e+02 Score=24.24 Aligned_cols=18 Identities=33% Similarity=0.340 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019853 104 LEQAVLEMNDDLVKMRQA 121 (335)
Q Consensus 104 LdQ~Ireme~~L~kar~~ 121 (335)
+...+.++++...++...
T Consensus 55 I~~~l~~A~~~~~ea~~~ 72 (174)
T PRK07352 55 ILQALKEAEERLRQAAQA 72 (174)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 405
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=37.06 E-value=3.1e+02 Score=24.56 Aligned_cols=40 Identities=15% Similarity=0.212 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 173 ADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKD 212 (335)
Q Consensus 173 e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~ 212 (335)
|++.+.++.+|.+.+..|..|+.-|..-+....++|+++.
T Consensus 28 EeE~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkLG 67 (162)
T PF04201_consen 28 EEEREELRSELAKVEEEIQTLRQVLAAKERHCAELKRKLG 67 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHC
Confidence 4455667777777777777887777777777777777764
No 406
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=36.65 E-value=3.1e+02 Score=24.49 Aligned_cols=46 Identities=13% Similarity=0.023 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Q 019853 134 NKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANAL 179 (335)
Q Consensus 134 ~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~l 179 (335)
.-..+....+..+......|+..++-+-|...+.+..-+..-...+
T Consensus 118 ~l~~~v~~~~~~~~~~l~~~~~~~d~~~A~~~~~rL~y~~kl~~ei 163 (173)
T PRK01773 118 AFSKEIKQEQQAILTELSTALNSQQWQQASQINDRLRFIKKLIIEI 163 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3334555566666666777888888888888877766665444433
No 407
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=36.63 E-value=6.5e+02 Score=28.16 Aligned_cols=10 Identities=30% Similarity=0.591 Sum_probs=5.3
Q ss_pred HHHHHHHHHH
Q 019853 242 AFEKMEEKVL 251 (335)
Q Consensus 242 ~feRmEeki~ 251 (335)
.++++++++.
T Consensus 482 el~~l~~~i~ 491 (908)
T COG0419 482 ELEELEEELS 491 (908)
T ss_pred HHHHHHHHHH
Confidence 4455555555
No 408
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=36.56 E-value=2.6e+02 Score=23.57 Aligned_cols=63 Identities=21% Similarity=0.191 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 160 DLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAK 222 (335)
Q Consensus 160 dLAreAL~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~~~Ak 222 (335)
.+....+.....++-.+..++..++.-..+..........++..|+.++.....|+.+...|+
T Consensus 46 ~~~e~~l~~l~~~e~~~~k~q~~~~~n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak 108 (139)
T PF05615_consen 46 FLYERLLKELAQFEFSILKSQLILEMNKRERENYEQLNEEIEQEIEQAKKEIEELKEELEEAK 108 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444555555554444444444444444444455555555555555554444443
No 409
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=36.44 E-value=2.2e+02 Score=26.30 Aligned_cols=67 Identities=15% Similarity=0.260 Sum_probs=33.9
Q ss_pred chHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 77 NLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDW 146 (335)
Q Consensus 77 sif~Rl~~lira~in~~ldk~EDPe~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~ 146 (335)
||..+|..++...++.--.-+..-...|+..|..+++++..+...+.. .+.++..++..++..+.++
T Consensus 171 Gi~~~l~~~l~~~~~~~~G~i~~~~~~l~~~~~~~~~~i~~~~~rl~~---~~~~l~~qf~~me~~i~~l 237 (239)
T PF07195_consen 171 GIATRLNDYLDSYTGSSTGSITSRIDSLNSQIKSLDKQIEDLEERLES---KEERLRKQFSAMESLISQL 237 (239)
T ss_pred cHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHh
Confidence 677777777666553221222222345555555555555555544332 3444555555555555443
No 410
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=36.01 E-value=4.5e+02 Score=26.19 Aligned_cols=49 Identities=12% Similarity=0.248 Sum_probs=27.1
Q ss_pred hhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 94 LSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQA 142 (335)
Q Consensus 94 ldk~EDPe~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~ 142 (335)
|..+.+|..+|..+|.-+-+.+..+......+...-.+|+....++..+
T Consensus 118 L~~~~~p~e~i~el~d~~l~~~~~l~~~~~~L~~enerL~~e~~~~~~q 166 (342)
T PF06632_consen 118 LKQVDNPAEVIRELFDWCLDANSRLQAENEHLQKENERLESEANKLLKQ 166 (342)
T ss_dssp -EE-S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677899877777776666666666666555444444444444333333
No 411
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=35.80 E-value=3.9e+02 Score=25.39 Aligned_cols=78 Identities=14% Similarity=0.199 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 110 EMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNV 189 (335)
Q Consensus 110 eme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~le~qle~~~~~ 189 (335)
||++.+.+++.-+-..+..+..|-..+.+++.+.+...++ .+.++.....|+..+...-..
T Consensus 132 d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~er-------------------lk~le~E~s~LeE~~~~l~~e 192 (290)
T COG4026 132 DLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQER-------------------LKRLEVENSRLEEMLKKLPGE 192 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHhchhH
Confidence 7777777777777777777777777777766665544433 334455555666666655556
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019853 190 VNNLVSNTRLLESKIQE 206 (335)
Q Consensus 190 v~~Lk~~l~~Le~ki~e 206 (335)
+..|+..+..|+.+++-
T Consensus 193 v~~L~~r~~ELe~~~El 209 (290)
T COG4026 193 VYDLKKRWDELEPGVEL 209 (290)
T ss_pred HHHHHHHHHHhcccccc
Confidence 66666666666555443
No 412
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=35.68 E-value=7.9e+02 Score=28.89 Aligned_cols=9 Identities=33% Similarity=0.549 Sum_probs=5.6
Q ss_pred CCCCCCCCC
Q 019853 12 TMPMTPAPS 20 (335)
Q Consensus 12 ~~~~~~~~~ 20 (335)
+||.-|..|
T Consensus 353 ~pP~vPevs 361 (1317)
T KOG0612|consen 353 VPPVVPEVS 361 (1317)
T ss_pred CCCCCCcCC
Confidence 466667664
No 413
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=35.68 E-value=3.4e+02 Score=27.98 Aligned_cols=52 Identities=17% Similarity=0.305 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Q 019853 128 SQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALK 180 (335)
Q Consensus 128 ~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~le 180 (335)
..+.+..+.+.++.+........-.++.+|.+ -+...+.+...+..++..++
T Consensus 37 ~~r~~~~~~e~l~~~rn~~sk~ig~~~~~~~~-~~~~l~~e~~~l~~~l~~~e 88 (429)
T COG0172 37 ERRKLLRELEELQAERNELSKEIGRALKRGED-DAEELIAEVKELKEKLKELE 88 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccch-hHHHHHHHHHHHHHHHHhcc
Confidence 34445555555555555555555566666665 33334333333333333333
No 414
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=35.65 E-value=12 Score=40.52 Aligned_cols=10 Identities=30% Similarity=0.315 Sum_probs=0.0
Q ss_pred cccccccccc
Q 019853 32 MVKKPLTTSF 41 (335)
Q Consensus 32 ~~~~~l~~~~ 41 (335)
..+.||.+||
T Consensus 26 ~~~~~~~~s~ 35 (722)
T PF05557_consen 26 FIFQRLSTSS 35 (722)
T ss_dssp ----------
T ss_pred cccccccccc
Confidence 4456677777
No 415
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=35.65 E-value=3.8e+02 Score=25.21 Aligned_cols=42 Identities=10% Similarity=0.148 Sum_probs=28.8
Q ss_pred cccCchHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHH
Q 019853 73 NTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKM 118 (335)
Q Consensus 73 ~~~Msif~Rl~~lira~in~~ldk~EDPe~~LdQ~Ireme~~L~ka 118 (335)
|.++|.|...|..|+..+. ++-+-...|-+.|.++-..+.+.
T Consensus 52 ~~e~Gtl~~~w~~~~~~~E----~~a~~H~~l~~~L~~~~~~i~~~ 93 (261)
T cd07674 52 GSPLGTFAPMWEVFRVSSD----KLALCHLELMRKLNDLIKDINRY 93 (261)
T ss_pred CCccchHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788899999999988754 34445556666666655666654
No 416
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=35.57 E-value=3.4e+02 Score=24.54 Aligned_cols=94 Identities=21% Similarity=0.301 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H-hcCc----HHHHHHHHHHHHHHHHHHHH----
Q 019853 115 LVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA-------L-QKGE----EDLAREALKRRKSYADNANA---- 178 (335)
Q Consensus 115 L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~A-------L-~~G~----EdLAreAL~rk~~~e~q~~~---- 178 (335)
..+..+..|.++ ..|+.++.++...+.+++.+...- . ...+ .|| ..++.+..+-......
T Consensus 7 ~qe~Qq~qa~Lv---~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dL-e~~l~rLeEEqqR~~~L~qv 82 (182)
T PF15035_consen 7 YQEEQQRQAQLV---QRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDL-EEALIRLEEEQQRSEELAQV 82 (182)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccH-HHHHHHHHHHHHhHHHHHHH
Confidence 344444445444 346777888888888887776211 0 0001 111 1244444443334444
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 179 ---LKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKD 212 (335)
Q Consensus 179 ---le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~ 212 (335)
|..++++....-+.|...+.++......++.++.
T Consensus 83 N~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~ 119 (182)
T PF15035_consen 83 NALLREQLEQARKANEALQEDLQKLTQDWERLRDELE 119 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888888888888888877777655544
No 417
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=35.57 E-value=2.8e+02 Score=23.67 Aligned_cols=58 Identities=16% Similarity=0.251 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 167 KRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTA 224 (335)
Q Consensus 167 ~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~~~AkAq 224 (335)
.|....++.+..+...+......+..|...-.....+|++++++-..|.-|.-.--..
T Consensus 37 ~R~~~Q~~~~~~~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~v~~~ 94 (141)
T PF13874_consen 37 KRVEAQEEEIAQHRERLKEINDKLEELQKHDLETSARLEEARRRHQELSHRLLRVLRK 94 (141)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666677777777777777777676777788888888887777665443333
No 418
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=35.46 E-value=4.9e+02 Score=26.80 Aligned_cols=48 Identities=10% Similarity=0.131 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 019853 168 RRKSYADNANALKAQLDQQKNVVNNL----VSNTRLLESKIQEARSKKDTLK 215 (335)
Q Consensus 168 rk~~~e~q~~~le~qle~~~~~v~~L----k~~l~~Le~ki~e~k~kr~~Lk 215 (335)
+...+..++..++.+++.++..++++ ..++-.|+.-|..|......|.
T Consensus 407 ~~~~l~~~i~~l~~~i~~~~~rl~~~e~rl~~qF~ame~~~s~mns~~s~L~ 458 (462)
T PRK08032 407 ATDGVNKTLKKLTKQYNAVSDSIDATIARYKAQFTQLDKLMTSLNSTSSYLT 458 (462)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777777777666555554 4444455555555555555443
No 419
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=35.45 E-value=2.2e+02 Score=29.33 Aligned_cols=54 Identities=7% Similarity=0.064 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 128 SQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSN 196 (335)
Q Consensus 128 ~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~le~qle~~~~~v~~Lk~~ 196 (335)
....+..++..++.+++.|+.|... +...|..|...++..+.++..+-.-|..+
T Consensus 407 ~~~~l~~~i~~l~~~i~~~~~rl~~---------------~e~rl~~qF~ame~~~s~mns~~s~L~~q 460 (462)
T PRK08032 407 ATDGVNKTLKKLTKQYNAVSDSIDA---------------TIARYKAQFTQLDKLMTSLNSTSSYLTQQ 460 (462)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345666666666666666666655 23345556666666666666666655444
No 420
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=35.41 E-value=3.7e+02 Score=25.03 Aligned_cols=21 Identities=10% Similarity=0.004 Sum_probs=15.5
Q ss_pred CCCCChhhHHHHHHHHHHhhh
Q 019853 313 AFPFRDAEIEKELNELRQRAK 333 (335)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~ 333 (335)
+.-.=|..|...|++|+.+++
T Consensus 226 g~~~id~Si~~~L~~l~~~~~ 246 (246)
T TIGR03321 226 GGHKLAWSVDDYLESLEEDVD 246 (246)
T ss_pred CCEEEechHHHHHHHHHhhcC
Confidence 444556779999999988753
No 421
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=35.39 E-value=3.7e+02 Score=24.93 Aligned_cols=95 Identities=15% Similarity=0.166 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Q 019853 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALK 180 (335)
Q Consensus 101 e~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~le 180 (335)
+.+|.|.++|...++..=-..+..+.+.-+.+..++...+..+......... -...++..+
T Consensus 12 IsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~-------------------K~~ELE~ce 72 (202)
T PF06818_consen 12 ISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRT-------------------KQLELEVCE 72 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-------------------hhHhHHHhH
Confidence 5778888888888887777777766666665555555555555544332211 122334555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 181 AQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 214 (335)
Q Consensus 181 ~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~L 214 (335)
.++......+.-|+..+..++..+..++.....+
T Consensus 73 ~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 73 NELQRKKNEAELLREKLGQLEAELAELREELACA 106 (202)
T ss_pred HHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence 5555566666666666666666666666666554
No 422
>PRK08453 fliD flagellar capping protein; Validated
Probab=35.10 E-value=2.1e+02 Score=31.25 Aligned_cols=70 Identities=10% Similarity=0.143 Sum_probs=39.8
Q ss_pred chHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 77 NLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRK 149 (335)
Q Consensus 77 sif~Rl~~lira~in~~ldk~EDPe~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~r 149 (335)
|||.||..++...+...-..+..-..-|...+..+++++.+....+. ....++..++..++..+.++..+
T Consensus 599 Gi~~rl~~~L~~~i~g~~G~l~~~~~sL~~q~k~L~~q~~~~e~rL~---~ry~rl~~qFsAmDs~IsqmNsq 668 (673)
T PRK08453 599 GIFSKFNQVIANLIDGGNAKLKIYEDSLTRDAKSLTKDKENAQELLK---TRYDIMAERFAAYDSQISKANQK 668 (673)
T ss_pred cHHHHHHHHHHHHhcCCCceehhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhh
Confidence 68888888887776431112223344566666666666655554443 34455566666666666655543
No 423
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=35.03 E-value=3.3e+02 Score=24.27 Aligned_cols=41 Identities=17% Similarity=0.056 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019853 116 VKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQK 156 (335)
Q Consensus 116 ~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~ 156 (335)
..+...+..+...+...+....+++..+.++...|..-+..
T Consensus 65 ~~I~~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~EA~~ii~~ 105 (181)
T PRK13454 65 GTITNDLAAAEELKQKAVEAEKAYNKALADARAEAQRIVAE 105 (181)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444555555555555555554444433
No 424
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=34.69 E-value=4.3e+02 Score=25.55 Aligned_cols=91 Identities=15% Similarity=0.162 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhccC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHH
Q 019853 84 RVVKSYANAILSSFE--DPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDL 161 (335)
Q Consensus 84 ~lira~in~~ldk~E--DPe~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdL 161 (335)
..++..++++++..+ |-..+.......+...+...+..+......-++.+.++.++...+.++..+
T Consensus 169 ~WLR~~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~r------------ 236 (269)
T PF05278_consen 169 DWLRSKLEEILEAKEIYDQHETREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGR------------ 236 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 162 AREALKRRKSYADNANALKAQLDQQKNVVNNL 193 (335)
Q Consensus 162 AreAL~rk~~~e~q~~~le~qle~~~~~v~~L 193 (335)
...++.....+...+.-+...|.++
T Consensus 237 -------l~~l~~~~~~l~k~~~~~~sKV~kf 261 (269)
T PF05278_consen 237 -------LGELEMESTRLSKTIKSIKSKVEKF 261 (269)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHh
No 425
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=34.39 E-value=3.9e+02 Score=24.99 Aligned_cols=6 Identities=17% Similarity=0.761 Sum_probs=3.1
Q ss_pred CCCCCC
Q 019853 11 FTMPMT 16 (335)
Q Consensus 11 ~~~~~~ 16 (335)
|.+|.|
T Consensus 19 L~Lpip 24 (216)
T KOG1962|consen 19 LLLPIP 24 (216)
T ss_pred HHcCCC
Confidence 345763
No 426
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.26 E-value=4.6e+02 Score=25.72 Aligned_cols=53 Identities=13% Similarity=0.174 Sum_probs=24.4
Q ss_pred CchHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 76 MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLEN 134 (335)
Q Consensus 76 Msif~Rl~~lira~in~~ldk~EDPe~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~ 134 (335)
-+.+.+++.+|--++ ++.-.| -++-..+.+.++..++...+-.++.+..++.+
T Consensus 98 y~~y~~~K~YV~P~~---l~~~~~---k~e~~k~~Ld~~~~~~~~~~~~l~~~va~v~q 150 (300)
T KOG2629|consen 98 YAAYRFVKSYVLPRF---LGESKD---KLEADKRQLDDQFDKAAKSLNALMDEVAQVSQ 150 (300)
T ss_pred HHHHHHHHHHHHHHh---hCccch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666665554442 333333 34444445555555555444444444333333
No 427
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=34.25 E-value=5.4e+02 Score=26.56 Aligned_cols=22 Identities=23% Similarity=0.492 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019853 106 QAVLEMNDDLVKMRQATAQVLA 127 (335)
Q Consensus 106 Q~Ireme~~L~kar~~lA~v~A 127 (335)
|-+.+++..+.+..+....+.+
T Consensus 13 qr~~~~~~~laq~~k~~s~~~a 34 (459)
T KOG0288|consen 13 QRLIDLNTELAQCEKAQSRLSA 34 (459)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444333333
No 428
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=33.99 E-value=5.1e+02 Score=26.17 Aligned_cols=58 Identities=14% Similarity=0.249 Sum_probs=34.6
Q ss_pred CCCCcHHHHHHHHHHHHHhHHHHHHHhhcccCCChhHHHhhhccCCHHHHHHHHHHHcCCCCCCCCCCCC
Q 019853 234 VNTSSALSAFEKMEEKVLTMESQADSLNQLTTDDLEGKFALLETSSVDDDLANLKKELSGSSKKGELPPG 303 (335)
Q Consensus 234 ~~~~~a~~~feRmEeki~~~EA~AeA~~eL~~~~Le~k~a~le~~~vddeLa~LKa~l~~~~~~~~~~~~ 303 (335)
+..-++...++|..++++.+..+.... +...|.. -...|+.|...|..-++...|.-|
T Consensus 343 L~~lsP~~~L~r~~qrL~~L~~rL~~a-------~~~~L~~-----~~~rL~~l~~rL~~lsP~~~L~RG 400 (438)
T PRK00286 343 LQQQNPQRRIERAQQRLEQLEQRLRRA-------MRRQLKR-----KRQRLEALAQQLEALSPLATLARG 400 (438)
T ss_pred HhhcCHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH-----HHHHHHHHHHHHHhCCChhHhcCc
Confidence 334567778899888888887765532 1222221 255677777777665555444444
No 429
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=33.41 E-value=97 Score=21.94 Aligned_cols=32 Identities=19% Similarity=0.376 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 179 LKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 217 (335)
Q Consensus 179 le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr 217 (335)
|++.++..++.++.+.. +|++++.|+..|..+
T Consensus 10 Lqe~~d~IEqkiedid~-------qIaeLe~KR~~Lv~q 41 (46)
T PF08946_consen 10 LQEHYDNIEQKIEDIDE-------QIAELEAKRQRLVDQ 41 (46)
T ss_dssp -----THHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHhHHHHHH-------HHHHHHHHHHHHHHh
Confidence 44455555555555544 445555556655543
No 430
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=33.37 E-value=7e+02 Score=27.61 Aligned_cols=45 Identities=18% Similarity=0.165 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q 019853 179 LKAQLDQQKNVVNNLVSNTRLLES----KIQEARSKKDTLKARAQSAKT 223 (335)
Q Consensus 179 le~qle~~~~~v~~Lk~~l~~Le~----ki~e~k~kr~~LkAr~~~AkA 223 (335)
..++...+.++|..|+..|..-+. +=..|+.+...|.-|.+.|.-
T Consensus 578 ar~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~ 626 (961)
T KOG4673|consen 578 ARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAER 626 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445556666666666665443 334567777778888777744
No 431
>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism]
Probab=32.97 E-value=5.6e+02 Score=26.32 Aligned_cols=127 Identities=13% Similarity=0.184 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 019853 79 FDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGE 158 (335)
Q Consensus 79 f~Rl~~lira~in~~ldk~EDPe~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~ 158 (335)
|.=+-.++.+..+-+-.++-+=+...-..+.|+...+.... +-.-..++.++.++...+.+..+-... |--.+
T Consensus 178 FrALE~aLe~~~s~L~~~~~~Le~~~~~~LdeLt~~is~~n------L~~lr~~k~~Lt~l~~rvqkvRDeLe~-LLddd 250 (414)
T KOG2662|consen 178 FRALEVALEAACSFLDSRLSELETEAYPLLDELTNKISTLN------LERLRILKKRLTELTSRVQKVRDELEE-LLDDD 250 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH------HHHHHHHhHHHHHHHHHHHHHHHHHHH-HhcCh
Confidence 34444444444444433333333333333334433333332 223344555666666666666666655 44578
Q ss_pred HHHHHHHHHHHH--------------------HH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 159 EDLAREALKRRK--------------------SY-----------ADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEA 207 (335)
Q Consensus 159 EdLAreAL~rk~--------------------~~-----------e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~ 207 (335)
||+|.-.|.+|. .. ++.+++++-.++.+=.+++.+..++..|..-|.+.
T Consensus 251 ~Dma~mYLT~K~~~~~~~~~~~~sp~~~~~~~r~~~~~~~s~~~~~dd~eElEMLLEaYf~qiD~~~nk~~~Lre~IddT 330 (414)
T KOG2662|consen 251 DDMAEMYLTRKLAQASSPESAPTSPTIKAGISRAKSNRASSTVRGEDDVEELEMLLEAYFMQIDSTLNKLESLREYIDDT 330 (414)
T ss_pred HHHHHHHHhHHhhhccccccCCCCccccCCccchhhcccchhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 899999999992 22 57777788777777777777777777777666666
Q ss_pred HHHHH
Q 019853 208 RSKKD 212 (335)
Q Consensus 208 k~kr~ 212 (335)
+.=.+
T Consensus 331 Ed~In 335 (414)
T KOG2662|consen 331 EDIIN 335 (414)
T ss_pred HHHHH
Confidence 54443
No 432
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=32.93 E-value=3.9e+02 Score=24.53 Aligned_cols=138 Identities=15% Similarity=0.208 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 111 MNDDLVKMRQATAQVLASQKRLENKCK-AAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNV 189 (335)
Q Consensus 111 me~~L~kar~~lA~v~A~~k~le~kl~-~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~le~qle~~~~~ 189 (335)
+...+..+...+..+-.....+...+. .....+..|... .....+.=++-...+...+......+...+..|+..-..
T Consensus 58 l~~a~~~i~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~~-~~~~rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~c~~ 136 (236)
T cd07651 58 LKNSLDTLRLETESMAKSHLKFAKQIRQDLEEKLAAFASS-YTQKRKKIQSHMEKLLKKKQDQEKYLEKAREKYEADCSK 136 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Q 019853 190 VNNLV--------SNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEK 249 (335)
Q Consensus 190 v~~Lk--------~~l~~Le~ki~e~k~kr~~LkAr~~~AkAq~~v~~~~~~~~~~~a~~~feRmEek 249 (335)
++.++ ..+.+++.++.............+..+--.-......-.-.-......|+.+|+.
T Consensus 137 ~e~~~~~~~~~~~ke~eK~~~k~~k~~~~~~~~~~~Y~~~v~~~~~~~~~~~~~~~~~~~~~Q~lEe~ 204 (236)
T cd07651 137 INSYTLQSQLTWGKELEKNNAKLNKAQSSINSSRRDYQNAVKALRELNEIWNREWKAALDDFQDLEEE 204 (236)
T ss_pred HHHHHHHHcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 433
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=32.90 E-value=6.6e+02 Score=27.15 Aligned_cols=84 Identities=21% Similarity=0.258 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHH------HHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H
Q 019853 133 ENKCKAAEQASEDWYRKAQ------LALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTR-------L 199 (335)
Q Consensus 133 e~kl~~~~~~~~~~e~rA~------~AL~~G~EdLAreAL~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~-------~ 199 (335)
+.++.+++..+..|..+.. ..+..+... |-.|+..-..+..++..++.-...+...-..++..+. +
T Consensus 121 EerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t-~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~ke 199 (617)
T PF15070_consen 121 EERLAELEEELERLQEQQEDRQKLLEQLQSDKAT-ASRALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKE 199 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchH-HHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHH
Confidence 4445555556666655543 224444444 4447777788888888888877766665444433332 5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019853 200 LESKIQEARSKKDTLKAR 217 (335)
Q Consensus 200 Le~ki~e~k~kr~~LkAr 217 (335)
|..++.+++.+...++.+
T Consensus 200 L~~kl~~l~~~l~~~~e~ 217 (617)
T PF15070_consen 200 LQKKLGELQEKLHNLKEK 217 (617)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 566666666666665544
No 434
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=32.84 E-value=4.1e+02 Score=24.75 Aligned_cols=13 Identities=46% Similarity=0.718 Sum_probs=7.3
Q ss_pred CHHHHHHHHHHHc
Q 019853 279 SVDDDLANLKKEL 291 (335)
Q Consensus 279 ~vddeLa~LKa~l 291 (335)
++...|..|+.++
T Consensus 233 Si~~~L~~l~~~~ 245 (246)
T TIGR03321 233 SVDDYLESLEEDV 245 (246)
T ss_pred hHHHHHHHHHhhc
Confidence 4555666665543
No 435
>PF08898 DUF1843: Domain of unknown function (DUF1843); InterPro: IPR014994 This domain is found in functionally uncharacterised proteins. It can be found independently or at the C terminus of the protein.
Probab=32.71 E-value=1.1e+02 Score=22.42 Aligned_cols=45 Identities=24% Similarity=0.298 Sum_probs=25.4
Q ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 151 QLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLES 202 (335)
Q Consensus 151 ~~AL~~G~EdLAreAL~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ 202 (335)
..|...|| |.+.+.+-.+.+..-.++......++.|+..+.+||.
T Consensus 8 q~AiasGD-------La~MK~l~~~aeq~L~~~~~i~~al~~Lk~EIaklE~ 52 (53)
T PF08898_consen 8 QQAIASGD-------LAQMKALAAQAEQQLAEAGDIAAALEKLKAEIAKLEA 52 (53)
T ss_pred HHHHHcCc-------HHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHhc
Confidence 34556665 3344455555555555555666666666666665553
No 436
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=32.68 E-value=3.1e+02 Score=23.96 Aligned_cols=42 Identities=17% Similarity=0.255 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 178 ALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQ 219 (335)
Q Consensus 178 ~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~~ 219 (335)
.+...++-++..++.|...+.+++..|+++-.+...+....+
T Consensus 91 ~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q 132 (145)
T COG1730 91 SADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQ 132 (145)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555544433
No 437
>PF14346 DUF4398: Domain of unknown function (DUF4398)
Probab=32.68 E-value=2.5e+02 Score=22.28 Aligned_cols=29 Identities=21% Similarity=0.360 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 019853 141 QASEDWYRKAQLALQKGEEDLAREALKRR 169 (335)
Q Consensus 141 ~~~~~~e~rA~~AL~~G~EdLAreAL~rk 169 (335)
..+.+.-.+|+.++..|+.+-|+..+..-
T Consensus 43 ~~A~~~L~~A~~a~~~~~y~~A~~~A~~A 71 (103)
T PF14346_consen 43 KEAREKLQRAKAALDDGDYERARRLAEQA 71 (103)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34445556678888888887776654433
No 438
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=32.64 E-value=2e+02 Score=21.13 Aligned_cols=45 Identities=9% Similarity=0.199 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 176 ANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQS 220 (335)
Q Consensus 176 ~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~~~ 220 (335)
+..++..+......+..++.+...+...++.++.-...|..=+..
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~lYE~ 46 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEENVKDLLSLYEV 46 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666666666666666666555554443
No 439
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=32.60 E-value=3.6e+02 Score=26.05 Aligned_cols=42 Identities=21% Similarity=0.241 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 165 ALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQE 206 (335)
Q Consensus 165 AL~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e 206 (335)
-|.|+..+|+++..++.....+...+..|++.+.+++.++.+
T Consensus 225 kLdrisrLEdkv~~lk~~n~~L~~~l~~l~~~v~e~k~~V~~ 266 (279)
T KOG0837|consen 225 KLDRISRLEDKVKTLKIYNRDLASELSKLKEQVAELKQKVME 266 (279)
T ss_pred HHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 366777778888887777777777777777777666666554
No 440
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=32.42 E-value=1.8e+02 Score=21.51 Aligned_cols=45 Identities=13% Similarity=0.264 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 175 NANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQ 219 (335)
Q Consensus 175 q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~~ 219 (335)
....+..++...+.++++++.....|+.+++.++.-.+.+.-.++
T Consensus 18 ~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR 62 (80)
T PF04977_consen 18 RYYQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAR 62 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
No 441
>PRK15362 pathogenicity island 2 effector protein SseC; Provisional
Probab=32.21 E-value=2.2e+02 Score=29.54 Aligned_cols=82 Identities=17% Similarity=0.158 Sum_probs=47.6
Q ss_pred chHHHHHHHHHHHHHHH--hhccC--CHH---HHHHHHHHHHHHHHHHH-HHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 019853 77 NLFDRLARVVKSYANAI--LSSFE--DPE---KILEQAVLEMNDDLVKM-RQATAQVL-ASQKRLENKCKAAEQASEDWY 147 (335)
Q Consensus 77 sif~Rl~~lira~in~~--ldk~E--DPe---~~LdQ~Ireme~~L~ka-r~~lA~v~-A~~k~le~kl~~~~~~~~~~e 147 (335)
+.++||.+.|-++.+.- |+.++ ||. .|.-+...++-.+.... .+++-... .+.....++++++++++++-.
T Consensus 61 ~AL~rLl~~~p~~~~~~~~Ls~l~~~dm~~m~mMat~L~l~~~ad~a~s~~kq~ei~td~Q~~LR~k~~~e~q~qi~ka~ 140 (473)
T PRK15362 61 NALKRILDAVPGNHKRPLSLSDFEQTPMDVMSMMATLLILSVFGDNAQSLCQALEIATEVQEALRDKQVKEYQEQIQKAI 140 (473)
T ss_pred HHHHHHHhhccCCCCCCcchHhhcCCChHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888776655554 77777 664 23333333332222222 11111111 122345667889999999999
Q ss_pred HHHHHHHhcCc
Q 019853 148 RKAQLALQKGE 158 (335)
Q Consensus 148 ~rA~~AL~~G~ 158 (335)
+++..|-+.|=
T Consensus 141 e~adkA~KagI 151 (473)
T PRK15362 141 EQEDKARKAGI 151 (473)
T ss_pred HHHHHHHhccH
Confidence 99988888765
No 442
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=32.20 E-value=2.4e+02 Score=23.06 Aligned_cols=35 Identities=14% Similarity=0.239 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 180 KAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 214 (335)
Q Consensus 180 e~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~L 214 (335)
...+..++-.+.+++..+..+..+++.+.+..+.|
T Consensus 64 ~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lL 98 (106)
T PF10805_consen 64 RDDVHDLQLELAELRGELKELSARLQGVSHQLDLL 98 (106)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444433
No 443
>PF15466 DUF4635: Domain of unknown function (DUF4635)
Probab=32.18 E-value=81 Score=26.83 Aligned_cols=40 Identities=20% Similarity=0.221 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHH
Q 019853 78 LFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVK 117 (335)
Q Consensus 78 if~Rl~~lira~in~~ldk~EDPe~~LdQ~Ireme~~L~k 117 (335)
-.+-+.+.++-++|-+++++|.-.+.|+|.++|++.=|+-
T Consensus 84 Pik~~r~WLkenLhvflEkLE~EvreLEQlV~DLE~WLDa 123 (135)
T PF15466_consen 84 PIKAIRNWLKENLHVFLEKLEKEVRELEQLVRDLEEWLDA 123 (135)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999999999999999999999999876653
No 444
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=32.13 E-value=1.5e+02 Score=24.49 Aligned_cols=37 Identities=27% Similarity=0.316 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 178 ALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 214 (335)
Q Consensus 178 ~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~L 214 (335)
.+..++.++.++++.|..++..+...+.+++.-++.|
T Consensus 3 ql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L 39 (126)
T TIGR00293 3 QLAAELQILQQQVESLQAQIAALRALIAELETAIETL 39 (126)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666666666666666666655555
No 445
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=32.09 E-value=4.1e+02 Score=24.49 Aligned_cols=25 Identities=16% Similarity=0.122 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 129 QKRLENKCKAAEQASEDWYRKAQLA 153 (335)
Q Consensus 129 ~k~le~kl~~~~~~~~~~e~rA~~A 153 (335)
..+|++++.+++.++.+.++.+...
T Consensus 98 evrLkrELa~Le~~l~~~~~~~~~~ 122 (195)
T PF12761_consen 98 EVRLKRELAELEEKLSKVEQAAESR 122 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456666666666666666666553
No 446
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=32.03 E-value=1.1e+02 Score=21.76 Aligned_cols=12 Identities=8% Similarity=0.280 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 019853 173 ADNANALKAQLD 184 (335)
Q Consensus 173 e~q~~~le~qle 184 (335)
|..++.+..+++
T Consensus 18 Eqkiedid~qIa 29 (46)
T PF08946_consen 18 EQKIEDIDEQIA 29 (46)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHhHHHHHHHHH
Confidence 333333333333
No 447
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=32.02 E-value=2.7e+02 Score=22.31 Aligned_cols=33 Identities=15% Similarity=0.266 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 184 DQQKNVVNNLVSNTRLLESKIQEARSKKDTLKA 216 (335)
Q Consensus 184 e~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkA 216 (335)
+++..+....+..+...+.++..+++++..|..
T Consensus 4 e~l~~e~e~~~~kl~q~e~~~k~L~nr~k~l~k 36 (86)
T PF12958_consen 4 EELQAEIEKAEKKLEQAEHKIKQLENRKKKLEK 36 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555555555543
No 448
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=31.89 E-value=3.6e+02 Score=23.74 Aligned_cols=106 Identities=12% Similarity=0.157 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHhhccCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 78 LFDRLARVVKSYANAILSSFEDPE---KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLAL 154 (335)
Q Consensus 78 if~Rl~~lira~in~~ldk~EDPe---~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL 154 (335)
+|+.+..++..+-..+.+.+++-+ .-.+....+.+..|.+++.....++...+.-- -...+..+.+....+..-+
T Consensus 39 l~~pi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~a~~~a--~~~~~~~~~~A~~ea~~~~ 116 (173)
T PRK13453 39 AWGPLKDVMDKRERDINRDIDDAEQAKLNAQKLEEENKQKLKETQEEVQKILEDAKVQA--RQQQEQIIHEANVRANGMI 116 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Q ss_pred hcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 155 QKGEEDLAREALKRRKSYADNANALKAQLDQ 185 (335)
Q Consensus 155 ~~G~EdLAreAL~rk~~~e~q~~~le~qle~ 185 (335)
...+.++.++--.-...+..++..+--.+..
T Consensus 117 ~~A~~~I~~ek~~a~~~l~~ei~~lA~~~a~ 147 (173)
T PRK13453 117 ETAQSEINSQKERAIADINNQVSELSVLIAS 147 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 449
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.85 E-value=4.3e+02 Score=24.67 Aligned_cols=16 Identities=44% Similarity=0.709 Sum_probs=14.4
Q ss_pred CChhhHHHHHHHHHHh
Q 019853 316 FRDAEIEKELNELRQR 331 (335)
Q Consensus 316 ~~~~~~~~~~~~~~~~ 331 (335)
|+++||..||++|.+.
T Consensus 157 ~DEDEL~~ELdeLeqe 172 (221)
T KOG1656|consen 157 FDEDELMAELDELEQE 172 (221)
T ss_pred cCHHHHHHHHHHHHHH
Confidence 9999999999999764
No 450
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=31.76 E-value=2.6e+02 Score=23.10 Aligned_cols=38 Identities=11% Similarity=0.269 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 172 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARS 209 (335)
Q Consensus 172 ~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~ 209 (335)
+..++..++..+........+++..+.+...++..++.
T Consensus 78 L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~ 115 (118)
T PF13815_consen 78 LSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKK 115 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555555543
No 451
>PRK14127 cell division protein GpsB; Provisional
Probab=31.58 E-value=1.7e+02 Score=24.37 Aligned_cols=40 Identities=13% Similarity=0.134 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 182 QLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSA 221 (335)
Q Consensus 182 qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~~~A 221 (335)
=+++.....+.+...+..|+.++..++.+...+..+....
T Consensus 31 FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~ 70 (109)
T PRK14127 31 FLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVSVG 70 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3455556667777777777777777777777777765543
No 452
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=31.57 E-value=1.7e+02 Score=28.28 Aligned_cols=19 Identities=16% Similarity=0.300 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHHHHHHhhc
Q 019853 78 LFDRLARVVKSYANAILSS 96 (335)
Q Consensus 78 if~Rl~~lira~in~~ldk 96 (335)
.-.|++-+-+|-++.+.-=
T Consensus 30 ~s~rlsh~s~gl~dhlftf 48 (389)
T PF06216_consen 30 FSARLSHVSNGLIDHLFTF 48 (389)
T ss_pred hhhhHHhhhhhhhhhheec
Confidence 3456666666666555543
No 453
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=31.53 E-value=4e+02 Score=24.22 Aligned_cols=14 Identities=14% Similarity=0.283 Sum_probs=8.7
Q ss_pred ccCCHHHHHHHHHH
Q 019853 96 SFEDPEKILEQAVL 109 (335)
Q Consensus 96 k~EDPe~~LdQ~Ir 109 (335)
.+.||...++-.+.
T Consensus 63 ~idd~~~~f~~~~~ 76 (190)
T PF05266_consen 63 QIDDSRSSFESLMK 76 (190)
T ss_pred ccCCcHHHHHHHHH
Confidence 56688766664443
No 454
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=31.50 E-value=3.9e+02 Score=24.04 Aligned_cols=65 Identities=9% Similarity=0.081 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 122 TAQVLASQKRLENKCKAAEQASEDWYRKAQLALQK--GEEDLAREALKRRKSYADNANALKAQLDQQ 186 (335)
Q Consensus 122 lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~--G~EdLAreAL~rk~~~e~q~~~le~qle~~ 186 (335)
+-.++..+..+...+..+...+.+...+...+... ++.+-+..+..+...++..+...+..++..
T Consensus 123 vk~~l~~R~~~~~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~i 189 (236)
T PF09325_consen 123 VKEALNRRDKKLIEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKDEFEEI 189 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344456666667777777777766666665555 333444444444444444444444444433
No 455
>PRK12704 phosphodiesterase; Provisional
Probab=31.37 E-value=6.4e+02 Score=26.53 Aligned_cols=8 Identities=38% Similarity=0.434 Sum_probs=4.5
Q ss_pred CCChhhHH
Q 019853 315 PFRDAEIE 322 (335)
Q Consensus 315 ~~~~~~~~ 322 (335)
||+..++-
T Consensus 281 P~~iee~~ 288 (520)
T PRK12704 281 PARIEEMV 288 (520)
T ss_pred CCCHHHHH
Confidence 55655554
No 456
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=31.35 E-value=4.2e+02 Score=24.42 Aligned_cols=65 Identities=14% Similarity=0.274 Sum_probs=52.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHH
Q 019853 98 EDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLA 162 (335)
Q Consensus 98 EDPe~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLA 162 (335)
++..+.|.++|..++..+.++-..++.+......+.....+....+..+-+-=-..|..|=..||
T Consensus 3 ~~~~k~i~~~i~~lE~hl~~l~~~~~~lv~k~~~L~~~~~~fak~~~~la~~E~~~L~~~L~~la 67 (211)
T cd07598 3 DNQTKFIQERITNVEKHFGELCQDFAAYTRKTARLRDKGDELAKSINAYADTENPSLKQGLKNFA 67 (211)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 35578999999999999999999999999999999999999888887776544444444444444
No 457
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=30.90 E-value=4.4e+02 Score=24.48 Aligned_cols=117 Identities=21% Similarity=0.265 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCCCCcH------HHHHHHH
Q 019853 174 DNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK-ARAQSAKTATKVSEMLGNVNTSSA------LSAFEKM 246 (335)
Q Consensus 174 ~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~Lk-Ar~~~AkAq~~v~~~~~~~~~~~a------~~~feRm 246 (335)
..+..|...+-+-+..+-.|+..+.+.+.|+=+=-.-+.--+ |-..++.. .....+......+. .+.+-..
T Consensus 57 ~~~~~L~~~LrEkEErILaLEad~~kWEqkYLEEs~mrq~a~dAaa~aa~~--rdttiI~~s~~~s~~~s~r~~eel~~a 134 (205)
T PF12240_consen 57 NNASNLKELLREKEERILALEADMTKWEQKYLEESAMRQFAMDAAATAAAQ--RDTTIINHSPSESYNSSLREEEELHMA 134 (205)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH--HHHHHHhcCCCCCCCccccchHHHHHh
Confidence 456667777777777888888888888777733222222111 21112111 22222322222222 2444445
Q ss_pred HHHHHhHHHHHHHhhcccCCChhHHHhhhccCCHHHHHHHHHHHcCCCCC---CCCCCCCCC
Q 019853 247 EEKVLTMESQADSLNQLTTDDLEGKFALLETSSVDDDLANLKKELSGSSK---KGELPPGRA 305 (335)
Q Consensus 247 Eeki~~~EA~AeA~~eL~~~~Le~k~a~le~~~vddeLa~LKa~l~~~~~---~~~~~~~~~ 305 (335)
..|+..||.+..+ |..++.+ -|..+--|+......+. .|.+.|.++
T Consensus 135 ~~K~qemE~RIK~--------LhaqI~E-----KDAmIkVLQqrs~~~~~k~s~~slrpA~s 183 (205)
T PF12240_consen 135 NRKCQEMENRIKA--------LHAQIAE-----KDAMIKVLQQRSRKDPGKASQGSLRPARS 183 (205)
T ss_pred hhhHHHHHHHHHH--------HHHHHHH-----HHHHHHHHHhhcccCCCcccccCCCCCCC
Confidence 5566666666543 3334332 37777777777665553 355555544
No 458
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=30.76 E-value=5.5e+02 Score=25.57 Aligned_cols=18 Identities=6% Similarity=0.294 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019853 131 RLENKCKAAEQASEDWYR 148 (335)
Q Consensus 131 ~le~kl~~~~~~~~~~e~ 148 (335)
.+++++.++++....+..
T Consensus 8 eL~~efq~Lqethr~Y~q 25 (330)
T PF07851_consen 8 ELQKEFQELQETHRSYKQ 25 (330)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333334444443333333
No 459
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=30.54 E-value=2.4e+02 Score=21.25 Aligned_cols=42 Identities=17% Similarity=0.351 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 174 DNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (335)
Q Consensus 174 ~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~Lk 215 (335)
+.+..++..++.....+..++.....++.++..+..+.+.+.
T Consensus 6 e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~ 47 (71)
T PF10779_consen 6 EKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIK 47 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444333
No 460
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=30.43 E-value=5.3e+02 Score=25.28 Aligned_cols=42 Identities=14% Similarity=0.199 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 163 REALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKI 204 (335)
Q Consensus 163 reAL~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki 204 (335)
+..-.+...+.+++..+..++-..-...+.++.....+-.++
T Consensus 175 ~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ 216 (294)
T COG1340 175 REIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEF 216 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444433333333333
No 461
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=30.37 E-value=6.3e+02 Score=26.11 Aligned_cols=27 Identities=30% Similarity=0.356 Sum_probs=16.1
Q ss_pred CcHHHHHHHHHHHHHhHHHHHHHhhcc
Q 019853 237 SSALSAFEKMEEKVLTMESQADSLNQL 263 (335)
Q Consensus 237 ~~a~~~feRmEeki~~~EA~AeA~~eL 263 (335)
.++..++..|..+....+.-+++...+
T Consensus 110 ~n~~~~l~~~~~~~r~~e~la~~~~~l 136 (459)
T KOG0288|consen 110 ENAELALREMRRKMRIAERLAEALKDL 136 (459)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHhhhc
Confidence 445566666666666666666655543
No 462
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.15 E-value=6.6e+02 Score=26.29 Aligned_cols=33 Identities=18% Similarity=0.322 Sum_probs=16.4
Q ss_pred HHHhhccCCHHH----------HHHHHHHHHHHHHHHHHHHHH
Q 019853 91 NAILSSFEDPEK----------ILEQAVLEMNDDLVKMRQATA 123 (335)
Q Consensus 91 n~~ldk~EDPe~----------~LdQ~Ireme~~L~kar~~lA 123 (335)
..+++..-||+. .+++.+.++..+..+.|+.+.
T Consensus 282 erl~e~l~dgeayLaKL~~~l~~~~~~~~~ltqqwed~R~pll 324 (521)
T KOG1937|consen 282 ERLIEALDDGEAYLAKLMGKLAELNKQMEELTQQWEDTRQPLL 324 (521)
T ss_pred HHHHHhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 455666667742 233344444445555554443
No 463
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=30.09 E-value=2.4e+02 Score=22.59 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 192 NLVSNTRLLESKIQEARSKKDTLK 215 (335)
Q Consensus 192 ~Lk~~l~~Le~ki~e~k~kr~~Lk 215 (335)
+|..++..|..++.++......++
T Consensus 28 qLss~V~~L~~kvdql~~dv~~a~ 51 (85)
T PRK09973 28 QLASNVQTLNAKIARLEQDMKALR 51 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 464
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=30.01 E-value=3.9e+02 Score=23.65 Aligned_cols=106 Identities=9% Similarity=0.012 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHhhccCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 78 LFDRLARVVKSYANAILSSFEDPE---KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLAL 154 (335)
Q Consensus 78 if~Rl~~lira~in~~ldk~EDPe---~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL 154 (335)
+|+-+..++..+-..+.+.+++-+ .-.++.+.+.+..|.+++.....++...+..-.+. .+....+-...+..=+
T Consensus 45 l~kPI~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~A~~ea~~ii~~A~~~ae~~--~~~il~~A~~ea~~~~ 122 (184)
T CHL00019 45 GKGVLSDLLDNRKQTILNTIRNSEERREEAIEKLEKARARLRQAELEADEIRVNGYSEIERE--KENLINQAKEDLERLE 122 (184)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q ss_pred hcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 155 QKGEEDLAREALKRRKSYADNANALKAQLDQ 185 (335)
Q Consensus 155 ~~G~EdLAreAL~rk~~~e~q~~~le~qle~ 185 (335)
...+.++..+--.-...+..++..+--+...
T Consensus 123 ~~a~~~ie~Ek~~a~~~l~~ei~~lav~~A~ 153 (184)
T CHL00019 123 NYKNETIRFEQQRAINQVRQQVFQLALQRAL 153 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 465
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=29.92 E-value=9.2e+02 Score=27.89 Aligned_cols=48 Identities=15% Similarity=0.138 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYR 148 (335)
Q Consensus 101 e~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~ 148 (335)
.+-|.-.+++|++.|.+..+.++..--..|.+....+.+..++.-...
T Consensus 410 ~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~ 457 (1195)
T KOG4643|consen 410 HKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTR 457 (1195)
T ss_pred hHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355777788888888888888888888888887777777766655443
No 466
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=29.91 E-value=3.3e+02 Score=22.72 Aligned_cols=50 Identities=12% Similarity=0.167 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQ 151 (335)
Q Consensus 102 ~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~ 151 (335)
.+|++--..+..++.++......+.......+.++...+.++...-+.|.
T Consensus 32 ~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~~~e~~L~~a~~ea~~i~~~a~ 81 (140)
T PRK07353 32 KVVEEREDYIRTNRAEAKERLAEAEKLEAQYEQQLASARKQAQAVIAEAE 81 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555444444444444444444444444333333
No 467
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=29.79 E-value=6.4e+02 Score=26.05 Aligned_cols=106 Identities=16% Similarity=0.151 Sum_probs=0.0
Q ss_pred ccCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Q 019853 96 SFEDPEKILE---QAVLEMNDDLVKMRQATAQVLAS-------QKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREA 165 (335)
Q Consensus 96 k~EDPe~~Ld---Q~Ireme~~L~kar~~lA~v~A~-------~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreA 165 (335)
.+-||+.... +.|-.++.+|.+++..++.+... -..++.++..++.+|.+...+.-..-..|
T Consensus 273 gvlDP~~~a~~~~~lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV~~l~~rI~aLe~QIa~er~kl~~~~g~~-------- 344 (434)
T PRK15178 273 KDIDPKETITAIYQLIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRLSAKIKVLEKQIGEQRNRLSNKLGSQ-------- 344 (434)
T ss_pred CCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCC--------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 166 LKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 214 (335)
Q Consensus 166 L~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~L 214 (335)
.+-..+..|+..--+.+=....+...+..|+.=-.++.++...|
T Consensus 345 -----~la~~laeYe~L~le~efAe~~y~sAlaaLE~AR~EA~RQ~~YL 388 (434)
T PRK15178 345 -----GSSESLSLFEDLRLQSEIAKARWESALQTLQQGKLQALRERQYL 388 (434)
T ss_pred -----chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhe
No 468
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=29.77 E-value=4.4e+02 Score=24.18 Aligned_cols=123 Identities=8% Similarity=0.111 Sum_probs=61.2
Q ss_pred hHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019853 78 LFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKG 157 (335)
Q Consensus 78 if~Rl~~lira~in~~ldk~EDPe~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G 157 (335)
++.++..+..-..+.-...+.+| |+.|+|.+. ++-.++..+..+-..+..++..+.+...+...-...|
T Consensus 78 ~~~ki~~~~~~qa~~d~~~l~e~---L~eY~r~i~--------svk~~f~~R~~a~~~~q~a~~~l~kkr~~~~Kl~~~~ 146 (224)
T cd07623 78 VEEKIEQLHGEQADTDFYILAEL---LKDYIGLIG--------AIKDVFHERVKVWQNWQNAQQTLTKKREAKAKLELSG 146 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34444444444444443333333 444444332 2334444556666666666666666666655555667
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 019853 158 EEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLL-ESKIQEARSKKDTL 214 (335)
Q Consensus 158 ~EdLAreAL~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~L-e~ki~e~k~kr~~L 214 (335)
+.|-.-.+-.+...++..+...+..++.. ...++..+... ..++.+++.-...+
T Consensus 147 ~~~K~~~~~~ev~~~e~~~~~a~~~fe~i---s~~~k~El~rF~~erv~dfk~~l~~~ 201 (224)
T cd07623 147 RTDKLDQAQQEIKEWEAKVDRGQKEFEEI---SKTIKKEIERFEKNRVKDFKDIIIKY 201 (224)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76655555555555555555544444433 23334444444 44556665555544
No 469
>PF15294 Leu_zip: Leucine zipper
Probab=29.69 E-value=5.3e+02 Score=25.06 Aligned_cols=97 Identities=20% Similarity=0.377 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Q 019853 101 EKILEQAVLEMNDDLVKMRQA-------TAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYA 173 (335)
Q Consensus 101 e~~LdQ~Ireme~~L~kar~~-------lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e 173 (335)
..+|.-.|+.++.+..+++.. ...++-+...++.++.+++...... +|..++.- -.+....++
T Consensus 127 ~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~---------~~k~~~~~-~~q~l~dLE 196 (278)
T PF15294_consen 127 SELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQ---------KGKKDLSF-KAQDLSDLE 196 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------hccccccc-cccchhhHH
Confidence 355666666666666666654 4445555555666665555533322 23322222 123444556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 174 DNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSK 210 (335)
Q Consensus 174 ~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~k 210 (335)
.++..++.+++. .+.....+...|+..+...+..
T Consensus 197 ~k~a~lK~e~ek---~~~d~~~~~k~L~e~L~~~Khe 230 (278)
T PF15294_consen 197 NKMAALKSELEK---ALQDKESQQKALEETLQSCKHE 230 (278)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 666666554443 2444444555555555554443
No 470
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=29.59 E-value=2.8e+02 Score=21.88 Aligned_cols=43 Identities=16% Similarity=0.217 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 175 NANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 217 (335)
Q Consensus 175 q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr 217 (335)
.++.++..-..+...+..+...-..|..+.+.++.+...+..|
T Consensus 26 EieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~Wqer 68 (79)
T PRK15422 26 EIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQER 68 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444445554444444433
No 471
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=29.26 E-value=2.3e+02 Score=20.65 Aligned_cols=34 Identities=15% Similarity=0.319 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 181 AQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 214 (335)
Q Consensus 181 ~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~L 214 (335)
..++.++..+..|......|...+..++.....|
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L 59 (64)
T PF00170_consen 26 QYIEELEEKVEELESENEELKKELEQLKKEIQSL 59 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444433
No 472
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=29.21 E-value=2.5e+02 Score=22.85 Aligned_cols=44 Identities=20% Similarity=0.311 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 171 SYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 214 (335)
Q Consensus 171 ~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~L 214 (335)
.+++-...++..++.....+..+...+..+..++.+++.....+
T Consensus 84 ~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 84 SLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 473
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=29.07 E-value=3.1e+02 Score=22.08 Aligned_cols=33 Identities=24% Similarity=0.385 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 182 QLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 214 (335)
Q Consensus 182 qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~L 214 (335)
.++.+..+...+...+..|+.++...+.++..|
T Consensus 50 ~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~L 82 (87)
T PF12709_consen 50 KVDELENENKALKRENEQLKKKLDTEREEKQEL 82 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444444444433
No 474
>cd07620 BAR_SH3BP1 The Bin/Amphiphysin/Rvs (BAR) domain of SH3-domain Binding Protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. SH3-domain binding protein 1 (SH3BP1 or 3BP-1) is a Rac GTPase activating protein that inhibits Rac-mediated platelet-derived growth factor (PDGF)-induced membrane ruffling. SH3BP1 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=29.03 E-value=5.3e+02 Score=24.81 Aligned_cols=87 Identities=15% Similarity=0.143 Sum_probs=48.1
Q ss_pred CcccccCCCcccccCchHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 62 SHCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQ 141 (335)
Q Consensus 62 ~~~~~~~~~~~~~~Msif~Rl~~lira~in~~ldk~EDPe~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~ 141 (335)
++|--.+|.-||.. |.|.++-...-.--|.+.+-.-+-+.-+++.|-+=-..|.+ ..+-.+.-.+|+++...-++..
T Consensus 63 s~~M~es~keLg~d-S~lg~aLe~~~~~e~~LA~~l~~~E~~Ve~~vl~PL~~L~e--~dL~~I~k~rKkL~k~~LD~D~ 139 (257)
T cd07620 63 SISMAESFKDFDAE-SSIRRVLEMCCFMQNMLANILADFEMKVEKDVLQPLNKLSE--EDLPEILKNKKQFAKLTTDWNS 139 (257)
T ss_pred HHHHHHHHhhCCCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH--hhHHHHHHHHHHHHhHHhhHHH
Confidence 45666677777776 67877764332222444444333333344333333333322 4566666677777777777777
Q ss_pred HHHHHHHHHH
Q 019853 142 ASEDWYRKAQ 151 (335)
Q Consensus 142 ~~~~~e~rA~ 151 (335)
.-.+|..-+.
T Consensus 140 ~K~R~~~a~k 149 (257)
T cd07620 140 AKSRSPQAAG 149 (257)
T ss_pred HHHHHHHhhc
Confidence 6666754433
No 475
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=29.02 E-value=9.2e+02 Score=27.60 Aligned_cols=158 Identities=11% Similarity=0.064 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhc-----CcHHHHHHHHH---HHHH
Q 019853 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQA----SEDWYRKAQLALQK-----GEEDLAREALK---RRKS 171 (335)
Q Consensus 104 LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~----~~~~e~rA~~AL~~-----G~EdLAreAL~---rk~~ 171 (335)
+++.+..... +......+..+-.....++..+..+... +..|....-.+... ........... ....
T Consensus 608 ~~~~l~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 686 (1047)
T PRK10246 608 HERQLRLLSQ-RHELQGQIAAHNQQIIQYQQQIEQRQQQLLTALAGYALTLPQEDEEASWLATRQQEAQSWQQRQNELTA 686 (1047)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 019853 172 YADNANALKAQLDQQ--------------KNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTS 237 (335)
Q Consensus 172 ~e~q~~~le~qle~~--------------~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~~~AkAq~~v~~~~~~~~~~ 237 (335)
+..++..++..+... ..........+..++..+..+......+..+...++..-.-.-.-.++...
T Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~f~~~ 766 (1047)
T PRK10246 687 LQNRIQQLTPLLETLPQSDDLPHSEETVALDNWRQVHEQCLSLHSQLQTLQQQDVLEAQRLQKAQAQFDTALQASVFDDQ 766 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Q ss_pred cHHHHHHHHHHHHHhHHHHHHHhhc
Q 019853 238 SALSAFEKMEEKVLTMESQADSLNQ 262 (335)
Q Consensus 238 ~a~~~feRmEeki~~~EA~AeA~~e 262 (335)
..+..+-.-.+.+..+....+.+.+
T Consensus 767 ~~~~~~~~~~~~~~~l~~~i~~~~~ 791 (1047)
T PRK10246 767 QAFLAALLDEETLTQLEQLKQNLEN 791 (1047)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHH
No 476
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=28.53 E-value=2.7e+02 Score=21.31 Aligned_cols=43 Identities=21% Similarity=0.329 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 172 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 214 (335)
Q Consensus 172 ~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~L 214 (335)
+....+.|..+-......+-+|+..+..++..+..++.+.+.+
T Consensus 17 L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~ 59 (74)
T PF12329_consen 17 LMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEEL 59 (74)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444444433
No 477
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=28.29 E-value=3.6e+02 Score=22.66 Aligned_cols=74 Identities=20% Similarity=0.238 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 134 NKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDT 213 (335)
Q Consensus 134 ~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~ 213 (335)
..++.+..-+++...+....+...-++|-..+ .... .++..++..+..+..|...+..|+.+|-+=..+...
T Consensus 33 ~~l~kL~~~i~eld~~i~~~v~~~~~~LL~q~-~~~~-------~~~~~l~~v~~~v~~L~~s~~RL~~eV~~Py~~~~~ 104 (132)
T PF10392_consen 33 TPLKKLNFDIQELDKRIRSQVTSNHEDLLSQA-SSIE-------ELESVLQAVRSSVESLQSSYERLRSEVIEPYEKIQK 104 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHH-HhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 34444455555555566666666667775444 2233 333344444444445555555555444444444433
Q ss_pred HH
Q 019853 214 LK 215 (335)
Q Consensus 214 Lk 215 (335)
+.
T Consensus 105 ~~ 106 (132)
T PF10392_consen 105 LT 106 (132)
T ss_pred HH
Confidence 33
No 478
>PF04394 DUF536: Protein of unknown function, DUF536; InterPro: IPR007489 This is a C-terminal region from several bacterial proteins of unknown function that may be involved in a theta-type replication mechanism.
Probab=28.14 E-value=2.2e+02 Score=20.05 Aligned_cols=36 Identities=19% Similarity=0.212 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 172 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEA 207 (335)
Q Consensus 172 ~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~ 207 (335)
...+++.+...++++..-.-.....+..|+..|.++
T Consensus 8 kd~qI~~l~kLLDQQQ~L~L~~~k~le~L~~el~E~ 43 (45)
T PF04394_consen 8 KDKQIEELQKLLDQQQQLALQDNKKLEELKAELEEY 43 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346777788888888888777778888887777763
No 479
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=28.02 E-value=3.6e+02 Score=22.50 Aligned_cols=46 Identities=17% Similarity=0.102 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Q 019853 120 QATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREA 165 (335)
Q Consensus 120 ~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreA 165 (335)
..+..+.......+..+.+++....++...|..-+..++.+..+..
T Consensus 43 ~~l~~Ae~~~~ea~~~~~~~e~~L~~a~~ea~~i~~~a~~~a~~~~ 88 (140)
T PRK07353 43 TNRAEAKERLAEAEKLEAQYEQQLASARKQAQAVIAEAEAEADKLA 88 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445555555555555555555555554444443333
No 480
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=27.93 E-value=9.2e+02 Score=27.26 Aligned_cols=44 Identities=16% Similarity=0.272 Sum_probs=28.2
Q ss_pred CHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 99 DPEKILEQAVLEMNDDLVK----MRQATAQVLASQKRLENKCKAAEQA 142 (335)
Q Consensus 99 DPe~~LdQ~Ireme~~L~k----ar~~lA~v~A~~k~le~kl~~~~~~ 142 (335)
||..+.++.+...+-.+.. +....-++++.++.++..-+.++..
T Consensus 536 dp~~~r~~~~~~~~~~v~~~~~~v~~E~krilaRk~liE~rKe~~E~~ 583 (988)
T KOG2072|consen 536 DPVIIRNSRAKKKEGAVTNYLKNVDKEHKRILARKSLIEKRKEDLEKQ 583 (988)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhHHHHH
Confidence 8987777666665555443 3455667777777777666655544
No 481
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=27.91 E-value=3.2e+02 Score=21.89 Aligned_cols=34 Identities=21% Similarity=0.249 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 182 QLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (335)
Q Consensus 182 qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~Lk 215 (335)
+++++..+|..|..++.++...+..++...+.-+
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk 58 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAK 58 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555566666666555554433
No 482
>PRK06664 fliD flagellar hook-associated protein FliD; Validated
Probab=27.86 E-value=3.8e+02 Score=29.22 Aligned_cols=24 Identities=17% Similarity=0.295 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 129 QKRLENKCKAAEQASEDWYRKAQL 152 (335)
Q Consensus 129 ~k~le~kl~~~~~~~~~~e~rA~~ 152 (335)
...+..++..+..+++.|+.|...
T Consensus 602 ~~~l~~~i~~l~~~i~~~e~rl~~ 625 (661)
T PRK06664 602 VKGLDERIADNNKKIEEYEKKLES 625 (661)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555666666666655543
No 483
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=27.83 E-value=3.3e+02 Score=22.10 Aligned_cols=95 Identities=9% Similarity=0.152 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 106 QAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQ 185 (335)
Q Consensus 106 Q~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~le~qle~ 185 (335)
|.+++--..+..-+..+-.-+.........++.+.....=|.-=-..-+....++.--..-.++..++..+..++.+.+.
T Consensus 13 q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~~i~~lek~~~~ 92 (110)
T TIGR02338 13 QQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLELRVKTLQRQEER 92 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHH
Q 019853 186 QKNVVNNLVSNTRLL 200 (335)
Q Consensus 186 ~~~~v~~Lk~~l~~L 200 (335)
....+..+..+++.+
T Consensus 93 l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 93 LREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHH
No 484
>PHA01750 hypothetical protein
Probab=27.71 E-value=2.1e+02 Score=21.97 Aligned_cols=36 Identities=22% Similarity=0.368 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 177 NALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKD 212 (335)
Q Consensus 177 ~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~ 212 (335)
+-.+.+++.+..++..++-....++.++.+.+.+.+
T Consensus 38 eIV~~ELdNL~~ei~~~kikqDnl~~qv~eik~k~d 73 (75)
T PHA01750 38 EIVNSELDNLKTEIEELKIKQDELSRQVEEIKRKLD 73 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhc
No 485
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=27.67 E-value=4.2e+02 Score=23.27 Aligned_cols=142 Identities=13% Similarity=0.199 Sum_probs=0.0
Q ss_pred CCcccccCc-hHHHHHHHHHHHHHHHhhccC-CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 69 GGALNTRMN-LFDRLARVVKSYANAILSSFE-DP-EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASED 145 (335)
Q Consensus 69 ~~~~~~~Ms-if~Rl~~lira~in~~ldk~E-DP-e~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~ 145 (335)
|.++|..++ +|=.+-+++-=.+ ++.++- .| ..+|++-=..+.+++..+......+.......+.++..++.++..
T Consensus 11 ~~~~~~~~~t~~~~iInFliL~~--lL~~~l~~pi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ 88 (173)
T PRK13453 11 GAAGGVEWGTVIVTVLTFIVLLA--LLKKFAWGPLKDVMDKRERDINRDIDDAEQAKLNAQKLEEENKQKLKETQEEVQK 88 (173)
T ss_pred HhhcCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 146 WYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTAT 225 (335)
Q Consensus 146 ~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~~~AkAq~ 225 (335)
.-+.|+..-..-.+++-.+| .......+......++...+.+......-.+.....-+.+
T Consensus 89 ii~~a~~~a~~~~~~~~~~A--------------------~~ea~~~~~~A~~~I~~ek~~a~~~l~~ei~~lA~~~a~k 148 (173)
T PRK13453 89 ILEDAKVQARQQQEQIIHEA--------------------NVRANGMIETAQSEINSQKERAIADINNQVSELSVLIASK 148 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhc
Q 019853 226 KVSEMLG 232 (335)
Q Consensus 226 ~v~~~~~ 232 (335)
-+...++
T Consensus 149 ll~~~l~ 155 (173)
T PRK13453 149 VLRKEIS 155 (173)
T ss_pred HHHhHcC
No 486
>PF14992 TMCO5: TMCO5 family
Probab=27.66 E-value=5.8e+02 Score=24.84 Aligned_cols=129 Identities=12% Similarity=0.186 Sum_probs=0.0
Q ss_pred hhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--------HHHHHHH
Q 019853 94 LSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGE--------EDLAREA 165 (335)
Q Consensus 94 ldk~EDPe~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~--------EdLAreA 165 (335)
.+..-|...-.+..+.+-+.++.++....+.+--..+-+-+-+.+.+.++..-+.. ....... +.--...
T Consensus 44 ~~~~~~~~e~e~~~~~~~e~~l~~le~e~~~LE~~ne~l~~~~~elq~k~~e~~~~--~~~e~~~~~~~lq~sk~~lqql 121 (280)
T PF14992_consen 44 MDHIADRSEEEDIISEERETDLQELELETAKLEKENEHLSKSVQELQRKQDEQETN--VQCEDPQLSQSLQFSKNKLQQL 121 (280)
T ss_pred HccccCchhHHhhhhhchHHHHHHHHhhhHHHhhhhHhhhhhhhhhhhhhccccCC--CCCCccchhcccHHhhhhHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 166 LKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTA 224 (335)
Q Consensus 166 L~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~~~AkAq 224 (335)
...-...+.++..++..+++....-..--.-+.+++.+++.++..++++.-.....+++
T Consensus 122 ~~~~~~qE~ei~kve~d~~~v~~l~eDq~~~i~klkE~L~rmE~ekE~~lLe~el~k~q 180 (280)
T PF14992_consen 122 LESCASQEKEIAKVEDDYQQVHQLCEDQANEIKKLKEKLRRMEEEKEMLLLEKELSKYQ 180 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 487
>cd07619 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 2 (Rich2) is a Rho GTPase activating protein that interacts with CD317, a lipid raft-associated integral membrane protein. It plays a role in actin cytoskeleton organization and the maintenance of microvilli in polarized epithelial cells. Rich2 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=27.54 E-value=5.5e+02 Score=24.50 Aligned_cols=127 Identities=13% Similarity=0.117 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhccCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHH
Q 019853 79 FDRLARVVKSYANAILSSFEDP-EKILEQAVLEMNDDLVKMRQATAQVLASQKRL----------------ENKCKAAEQ 141 (335)
Q Consensus 79 f~Rl~~lira~in~~ldk~EDP-e~~LdQ~Ireme~~L~kar~~lA~v~A~~k~l----------------e~kl~~~~~ 141 (335)
++||.......-..+-..+-+| ..+++--|..+.....++....-+.=+.+.++ ..+.++++.
T Consensus 90 ~~kla~a~~~~d~~i~~~fl~PL~~~le~dlk~I~k~RK~Le~~RLD~D~~K~r~~~a~~~~~~~~~~~~~~~k~e~lr~ 169 (248)
T cd07619 90 EDKLAQELILFELQIERDVVEPLYVLAEVEIPNIQKQRKHLAKLVLDMDSSRTRWQQSSKSSGLSSNLQPTGAKADALRE 169 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHhhHHHHHHHHHhccccccccccccCCCCccHHHHH
Q ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 142 ASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQ 205 (335)
Q Consensus 142 ~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~ 205 (335)
++++.+++-..|-..--+++---.-......+--+.-++.|++-.++..+-|..-+-.++..++
T Consensus 170 e~E~ae~~~e~~kd~~~~~m~~~l~~e~e~~~~l~~Lv~AQleYHr~A~eiLe~l~~~i~~~~~ 233 (248)
T cd07619 170 EMEEAANRMEICRDQLSADMYSFVAKEIDYANYFQTLIEVQAEYHRKSLELLQSVLPQIKAHQE 233 (248)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 488
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=27.46 E-value=4e+02 Score=24.22 Aligned_cols=52 Identities=12% Similarity=0.176 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 163 REALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 214 (335)
Q Consensus 163 reAL~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~L 214 (335)
|+--.....+.+.-..|....+.-...++.|+.+-..|+..++...+|++.|
T Consensus 105 Re~Q~lql~L~eEr~Ry~rLQqssD~~lD~Lr~qq~~Lq~qL~~T~RKLEnL 156 (179)
T PF13942_consen 105 REQQVLQLQLSEERARYQRLQQSSDSELDALRQQQQRLQYQLDTTTRKLENL 156 (179)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
No 489
>PF10079 DUF2317: Uncharacterized protein conserved in bacteria (DUF2317); InterPro: IPR011199 Members of this protein family include BshC, which is an enzyme required for bacillithiol biosynthesis and described as a cysteine-adding enzyme. Bacillithiol is a low-molecular-weight thiol, an analog of glutathione and mycothiol, and is found largely in the Firmicutes.
Probab=27.45 E-value=5.8e+02 Score=27.02 Aligned_cols=113 Identities=12% Similarity=0.163 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhccC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHH
Q 019853 84 RVVKSYANAILSSFE-DPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLA 162 (335)
Q Consensus 84 ~lira~in~~ldk~E-DPe~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLA 162 (335)
+++...+...+++.. ++..++..-+....+.+-+.+.... ++...++....+.+..+.....+.+-|..|.
T Consensus 383 tlve~~~~k~l~k~~l~~~d~~~~~~~~~~~~~~~~~~~~~--------~~~~f~~~~~~l~~~~~~l~~~~~~~d~tl~ 454 (542)
T PF10079_consen 383 TLVEPKVAKKLEKLGLSVEDVFEDGEELLKERWLEEQDPSE--------IEDDFEEEKEQLEAQFEPLKEKAAKIDPTLE 454 (542)
T ss_pred EEEcHHHHHHHHHcCCCHHHHhhccHHHHHHHHHHhccccc--------HHHHHHHHHHHHHHHHHHHHHHHHHhCccHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 019853 163 REALKRRKSYADNANALKAQLDQ-QKNVVNNLVSNTRLLESKI 204 (335)
Q Consensus 163 reAL~rk~~~e~q~~~le~qle~-~~~~v~~Lk~~l~~Le~ki 204 (335)
..+-........++..|+..+.+ .++.-+..-.++.+++..|
T Consensus 455 ~~~e~~~~~~~~ql~~Le~k~~~a~~rk~~~~l~q~~~l~~~L 497 (542)
T PF10079_consen 455 GLVEKNESKILKQLDYLEKKLLKAEKRKHETALRQLDRLENSL 497 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhc
No 490
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=27.25 E-value=7.6e+02 Score=26.08 Aligned_cols=110 Identities=11% Similarity=0.108 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Q 019853 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALK 180 (335)
Q Consensus 101 e~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~le 180 (335)
.+.|+.-.|.|..+..+....+-........--..++++..+++.-+...+. |+...+.|-...-.+-...+ +.+..-
T Consensus 297 i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~-L~~~~d~L~~q~~kq~Is~e-~fe~mn 374 (622)
T COG5185 297 IKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKA-LQSNIDELHKQLRKQGISTE-QFELMN 374 (622)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHhcCCCHH-HHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 181 AQLDQQKNVVNNLVSNTRLLESKIQEARSKKD 212 (335)
Q Consensus 181 ~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~ 212 (335)
++.+++...++.+.-+..+|...+-+-+....
T Consensus 375 ~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq 406 (622)
T COG5185 375 QEREKLTRELDKINIQSDKLTKSVKSRKLEAQ 406 (622)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHhHHHHHH
No 491
>KOG4182 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.17 E-value=7.8e+02 Score=26.19 Aligned_cols=147 Identities=26% Similarity=0.336 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 137 KAAEQASEDWYRKAQLALQKGE---EDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDT 213 (335)
Q Consensus 137 ~~~~~~~~~~e~rA~~AL~~G~---EdLAreAL~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~ 213 (335)
+.++.-+.+++.+-+.|...=. |+--+.++.+.-........++.....+...+..+...+...+.
T Consensus 34 ea~e~~i~dle~KLQia~eeigaalEEqSggal~rmPRaakd~~~Lq~Da~~Lq~kma~il~el~~aeg----------- 102 (828)
T KOG4182|consen 34 EAAEAFIRDLEAKLQIAIEEIGAALEEQSGGALARMPRAAKDSAALQADAHRLQEKMAAILLELAAAEG----------- 102 (828)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhccchHhhCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----------
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhHHHHHHHhhcccC-----CChhHHHhhhccCCHHHHHHHHH
Q 019853 214 LKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMESQADSLNQLTT-----DDLEGKFALLETSSVDDDLANLK 288 (335)
Q Consensus 214 LkAr~~~AkAq~~v~~~~~~~~~~~a~~~feRmEeki~~~EA~AeA~~eL~~-----~~Le~k~a~le~~~vddeLa~LK 288 (335)
.+.+-..+++|+..+-..+++.-+.+.+-.+ ..+++-|+.-.-..+-+.|+.|+
T Consensus 103 ---------------------esadCiAaLaRldn~kQkleaA~esLQdaaGl~nL~a~lED~Fa~gDL~~aadkLaalq 161 (828)
T KOG4182|consen 103 ---------------------ESADCIAALARLDNKKQKLEAAKESLQDAAGLGNLLAELEDGFARGDLKGAADKLAALQ 161 (828)
T ss_pred ---------------------ChHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCchhHHHHHHHHH
Q ss_pred HHcCCCCCCCCCCCCCCcCCCCCCCCCCChhhHHHHHHHHHHhhh
Q 019853 289 KELSGSSKKGELPPGRAAASSTNTAFPFRDAEIEKELNELRQRAK 333 (335)
Q Consensus 289 a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (335)
+-+... +++|+- .+....|+.+.+++.
T Consensus 162 kcL~A~---~elaef---------------Ae~qkQlE~~edRLE 188 (828)
T KOG4182|consen 162 KCLHAQ---EELAEF---------------AERQKQLEDFEDRLE 188 (828)
T ss_pred HHHHHH---HHhHHH---------------HHHHHHHHHHHHHHH
No 492
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=27.10 E-value=4.2e+02 Score=23.01 Aligned_cols=104 Identities=11% Similarity=0.117 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhcCcHHHHHHHHHHHHHHHHHHHHH
Q 019853 103 ILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQ---LALQKGEEDLAREALKRRKSYADNANAL 179 (335)
Q Consensus 103 ~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~---~AL~~G~EdLAreAL~rk~~~e~q~~~l 179 (335)
.|.-+-++....|.+++..|.++-..-+....-+..+..........+. .....-.++|=+.- ...++..+...
T Consensus 26 ~L~k~~~~v~~~i~~L~~~L~~~~n~t~~~~~~v~~i~~~~~~~q~~~~~n~~i~~~~s~~l~~~~---~~~~e~~i~~~ 102 (146)
T PF08702_consen 26 FLDKYERDVDKDIQELENLLDQISNSTSEAFEYVKNIKDSLRPRQKQAKPNDNIYNQYSKSLRKMI---IYILETKIINQ 102 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CHHHHHHHHHH
T ss_pred HHHHHccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccccccCCcccHHHHHHHHHHHHH---HHHHHHHHhhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 180 KAQLDQQKNVVNNLVSNTRLLESKIQEARS 209 (335)
Q Consensus 180 e~qle~~~~~v~~Lk~~l~~Le~ki~e~k~ 209 (335)
...+..+...+......+.+||..|....+
T Consensus 103 ~~~I~~Lq~~~~~~~~ki~~Le~~i~~~~~ 132 (146)
T PF08702_consen 103 PSNIRVLQNILRSNRQKIQRLEQDIDQQER 132 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 493
>PRK01203 prefoldin subunit alpha; Provisional
Probab=27.07 E-value=2.2e+02 Score=24.47 Aligned_cols=41 Identities=12% Similarity=0.223 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 162 AREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLES 202 (335)
Q Consensus 162 AreAL~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ 202 (335)
|++...+...++.+++.|+++++.++....++...+..++.
T Consensus 2 ~~~~~~~~~~~~~q~e~l~~ql~~L~~a~se~~~~ie~L~~ 42 (130)
T PRK01203 2 ARDVEAQLNYIESLISSVDSQIDSLNKTLSEVQQTISFLSD 42 (130)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
No 494
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=26.93 E-value=4.7e+02 Score=23.58 Aligned_cols=98 Identities=17% Similarity=0.257 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 106 QAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQ 185 (335)
Q Consensus 106 Q~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~le~qle~ 185 (335)
+.....+..+.++...+..+......++.+++.....-..-++|... |.+...+..+...++.+++.
T Consensus 62 ~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~-------------l~~l~~l~~~~~~l~~el~~ 128 (188)
T PF03962_consen 62 QAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREEL-------------LEELEELKKELKELKKELEK 128 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHH-------------HHHHHHHHHHHHHHHHHHHH
Q ss_pred HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 186 QK----NVVNNLVSNTRLLESKIQEARSKKDTLKA 216 (335)
Q Consensus 186 ~~----~~v~~Lk~~l~~Le~ki~e~k~kr~~LkA 216 (335)
+. ..+.+++..+..+...+...-.-...|+.
T Consensus 129 ~~~~Dp~~i~~~~~~~~~~~~~anrwTDNI~~l~~ 163 (188)
T PF03962_consen 129 YSENDPEKIEKLKEEIKIAKEAANRWTDNIFSLKS 163 (188)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
No 495
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.87 E-value=8.3e+02 Score=26.36 Aligned_cols=139 Identities=16% Similarity=0.155 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 105 EQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLD 184 (335)
Q Consensus 105 dQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~le~qle 184 (335)
+|||.-..---.+..+.+-.+.-.+++--+++..+++++.+.+++|.. ||...=+-+..++.-...++..+.
T Consensus 573 EqYi~~~dlV~~e~qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~--------La~R~eea~e~qe~L~~~~~~L~~ 644 (741)
T KOG4460|consen 573 EQYILKQDLVKEEIQRHVKLLCDQKKKQLQDLSYCREERKSLREMAER--------LADRYEEAKEKQEDLMNRMKKLLH 644 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHhHHHHHHHHHHHHh
Q ss_pred H--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC---CcHHHHHHHHH
Q 019853 185 Q--------------QKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNT---SSALSAFEKME 247 (335)
Q Consensus 185 ~--------------~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~~~AkAq~~v~~~~~~~~~---~~a~~~feRmE 247 (335)
. +++.+..+-..++.|.+-|+.++.+.+- .++..++.+....+....... ....+.+..+-
T Consensus 645 ~~~~~lp~l~~AErdFk~Elq~~~~~~~~L~~~iET~~~~~~K--Q~~H~~~v~~al~K~~Y~l~~~Q~~~iqsiL~~L~ 722 (741)
T KOG4460|consen 645 SFHSELPVLSDAERDFKKELQLIPDQLRHLGNAIETVTMKKDK--QQQHMEKVLSALPKPTYILSAYQRKCIQSILKELG 722 (741)
T ss_pred cccccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhccCCcccccHHHHHHHHHHHHHHH
Q ss_pred HHHHhH
Q 019853 248 EKVLTM 253 (335)
Q Consensus 248 eki~~~ 253 (335)
..|.++
T Consensus 723 ~~i~~~ 728 (741)
T KOG4460|consen 723 EHIREM 728 (741)
T ss_pred HHHHHH
No 496
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=26.87 E-value=7.9e+02 Score=26.15 Aligned_cols=101 Identities=9% Similarity=0.055 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcH--HHHHHHHHHHHHHHHHHHHHH
Q 019853 103 ILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEE--DLAREALKRRKSYADNANALK 180 (335)
Q Consensus 103 ~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~E--dLAreAL~rk~~~e~q~~~le 180 (335)
++.+.+||...++.-....+..-..+-.+.......+..++.+...+++...-..++ .+=.+...+....+.....++
T Consensus 202 ~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~Ele 281 (596)
T KOG4360|consen 202 DCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELE 281 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019853 181 AQLDQQKNVVNNLVSNTRLLESK 203 (335)
Q Consensus 181 ~qle~~~~~v~~Lk~~l~~Le~k 203 (335)
..+.+.........+.|..|..+
T Consensus 282 DkyAE~m~~~~EaeeELk~lrs~ 304 (596)
T KOG4360|consen 282 DKYAECMQMLHEAEEELKCLRSC 304 (596)
T ss_pred HHHHHHHHHHHHHHHHHHhhccC
No 497
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=26.86 E-value=3.9e+02 Score=22.61 Aligned_cols=69 Identities=19% Similarity=0.304 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019853 164 EALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLG 232 (335)
Q Consensus 164 eAL~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~~~AkAq~~v~~~~~ 232 (335)
..+..-..+.+.--.++..++..+.++...-..+..++..+.+...+.+.+..+..-......+...+.
T Consensus 38 ~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~s~~~l~~~L~~~~~ 106 (150)
T PF07200_consen 38 ELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDELSSNYSPDALLARLQAAAS 106 (150)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHH
No 498
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=26.86 E-value=6.1e+02 Score=24.80 Aligned_cols=106 Identities=16% Similarity=0.250 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHhcCcHHHHHHHHHHHHHHHHHHHHH
Q 019853 106 QAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQ------LALQKGEEDLAREALKRRKSYADNANAL 179 (335)
Q Consensus 106 Q~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~------~AL~~G~EdLAreAL~rk~~~e~q~~~l 179 (335)
|-|.+++.++.++++. +++-+-+++.++....+-..++. .+|+.-+--|.-.+ ..++.....+
T Consensus 18 qKIqelE~QldkLkKE-------~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c----~~lek~rqKl 86 (307)
T PF10481_consen 18 QKIQELEQQLDKLKKE-------RQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESC----ENLEKTRQKL 86 (307)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHH----HHHHHHHHHh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 180 KAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAK 222 (335)
Q Consensus 180 e~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~~~Ak 222 (335)
...+.--+.+|.-|..++...+..|+.+..+...++......+
T Consensus 87 shdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ 129 (307)
T PF10481_consen 87 SHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQ 129 (307)
T ss_pred hHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 499
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=26.86 E-value=3.3e+02 Score=21.81 Aligned_cols=96 Identities=13% Similarity=0.144 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 106 QAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQ 185 (335)
Q Consensus 106 Q~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~le~qle~ 185 (335)
|.+++--+.+..-+..+-....+.......+..+.....=|..=-...+..-.+++--..=.++..++..+..++.+++.
T Consensus 9 q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~~l~~~~~~ 88 (105)
T cd00632 9 QQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQEKEEARTELKERLETIELRIKRLERQEED 88 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHH
Q 019853 186 QKNVVNNLVSNTRLLE 201 (335)
Q Consensus 186 ~~~~v~~Lk~~l~~Le 201 (335)
.......++..+.++.
T Consensus 89 l~~~~~elk~~l~~~~ 104 (105)
T cd00632 89 LQEKLKELQEKIQQAQ 104 (105)
T ss_pred HHHHHHHHHHHHHHHh
No 500
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=26.79 E-value=6.3e+02 Score=27.02 Aligned_cols=82 Identities=15% Similarity=0.152 Sum_probs=0.0
Q ss_pred eeccccccCCCCcccccCCCcccccCchHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 51 VTRLRIAPSSRSHCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQK 130 (335)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~Msif~Rl~~lira~in~~ldk~EDPe~~LdQ~Ireme~~L~kar~~lA~v~A~~k 130 (335)
|.+.++..+....+.+++||+-+...++-+=|++.|+.+|+.. |+.+|.+.=+.|..++..=......-+
T Consensus 325 vD~~~l~~~~~pg~g~~~~~~~~~~~~~~~~~r~~v~nsI~kc----------Le~qIn~qf~tIe~Lk~~n~~~~~kl~ 394 (557)
T PF01763_consen 325 VDQNRLFDTRQPGFGGAPGGAGSGGEPVQQAFRDSVSNSINKC----------LEGQINNQFDTIEDLKEENQDLEKKLR 394 (557)
T ss_pred ccccccCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHH
Q 019853 131 RLENKCKAAEQA 142 (335)
Q Consensus 131 ~le~kl~~~~~~ 142 (335)
.++.++.+++.+
T Consensus 395 ~~e~~L~r~~~~ 406 (557)
T PF01763_consen 395 ELESELSRYREE 406 (557)
T ss_pred HHHHHHHHHHHh
Done!