Query 019853
Match_columns 335
No_of_seqs 160 out of 814
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 08:04:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019853.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019853hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mq9_A Bone marrow stromal ant 97.1 0.029 1E-06 55.3 19.2 121 78-214 349-469 (471)
2 4abm_A Charged multivesicular 97.0 0.013 4.5E-07 44.9 12.1 74 119-193 5-78 (79)
3 3frt_A Charged multivesicular 96.8 0.0074 2.5E-07 54.8 10.7 40 128-167 22-61 (218)
4 3na7_A HP0958; flagellar bioge 96.2 0.69 2.4E-05 42.3 22.3 145 102-250 35-188 (256)
5 2gd5_A Charged multivesicular 96.1 0.018 6.1E-07 50.4 8.2 51 99-163 7-57 (179)
6 2fxo_A Myosin heavy chain, car 96.1 0.49 1.7E-05 39.1 17.5 112 104-215 11-124 (129)
7 3oja_B Anopheles plasmodium-re 95.6 0.66 2.2E-05 46.6 18.4 106 111-216 454-565 (597)
8 1i84_S Smooth muscle myosin he 94.7 0.18 6.1E-06 55.8 12.2 108 106-214 857-967 (1184)
9 3vkg_A Dynein heavy chain, cyt 94.0 5.1 0.00018 48.8 22.7 83 171-258 2018-2101(3245)
10 1i84_S Smooth muscle myosin he 93.9 0.31 1.1E-05 53.9 11.7 41 113-153 857-897 (1184)
11 3vkg_A Dynein heavy chain, cyt 92.5 8.8 0.0003 46.8 21.6 59 163-221 1990-2054(3245)
12 3oja_B Anopheles plasmodium-re 92.0 3.4 0.00012 41.3 15.5 109 105-217 455-573 (597)
13 3o0z_A RHO-associated protein 91.4 6.6 0.00023 34.0 18.0 114 99-224 6-119 (168)
14 3mq7_A Bone marrow stromal ant 91.1 5.4 0.00018 32.5 13.7 83 130-220 28-110 (121)
15 2v71_A Nuclear distribution pr 90.1 9.5 0.00032 33.6 20.1 110 106-219 17-126 (189)
16 3bas_A Myosin heavy chain, str 89.6 5.8 0.0002 30.5 11.8 46 104-149 12-57 (89)
17 1deq_A Fibrinogen (alpha chain 89.5 5.9 0.0002 38.5 13.5 63 96-158 103-165 (390)
18 3ghg_A Fibrinogen alpha chain; 87.4 5.6 0.00019 40.2 12.2 98 105-211 56-154 (562)
19 2efr_A General control protein 86.8 14 0.00047 31.5 19.8 50 166-215 69-118 (155)
20 3ajw_A Flagellar FLIJ protein; 86.3 12 0.00041 30.4 13.5 105 104-214 10-114 (150)
21 3na7_A HP0958; flagellar bioge 86.0 19 0.00067 32.5 21.8 120 88-217 14-133 (256)
22 3iox_A AGI/II, PA; alpha helix 85.4 28 0.00096 34.9 16.0 80 110-193 6-85 (497)
23 4fm3_A Uncharacterized hypothe 84.6 12 0.00042 29.5 10.6 64 141-205 32-95 (98)
24 3ghg_A Fibrinogen alpha chain; 84.4 20 0.00067 36.3 14.3 18 185-202 135-152 (562)
25 3u59_A Tropomyosin beta chain; 84.3 13 0.00045 29.0 13.7 71 132-207 7-77 (101)
26 3u1c_A Tropomyosin alpha-1 cha 83.9 14 0.00048 29.0 13.7 70 132-206 7-76 (101)
27 1m1j_B Fibrinogen beta chain; 83.6 38 0.0013 33.7 16.4 41 104-144 98-138 (464)
28 3ol1_A Vimentin; structural ge 83.1 17 0.00057 29.4 15.2 91 102-218 16-106 (119)
29 2dfs_A Myosin-5A; myosin-V, in 82.4 12 0.00039 41.2 12.9 16 129-144 923-938 (1080)
30 2v4h_A NF-kappa-B essential mo 82.1 18 0.00062 29.1 11.7 45 166-210 61-105 (110)
31 2v71_A Nuclear distribution pr 81.8 26 0.0009 30.7 21.7 118 84-216 13-130 (189)
32 3oja_A Leucine-rich immune mol 81.6 40 0.0014 32.7 17.9 42 116-157 356-397 (487)
33 1ic2_A Tropomyosin alpha chain 80.9 15 0.00053 27.4 12.1 23 132-154 4-26 (81)
34 1l8d_A DNA double-strand break 80.8 8 0.00027 30.3 8.4 39 108-146 5-43 (112)
35 1deq_A Fibrinogen (alpha chain 80.7 43 0.0015 32.5 14.8 40 172-211 118-157 (390)
36 3mq9_A Bone marrow stromal ant 78.7 49 0.0017 31.9 16.4 58 168-225 405-466 (471)
37 1m1j_C Fibrinogen gamma chain; 78.6 32 0.0011 33.6 13.5 50 166-215 83-132 (409)
38 2jee_A YIIU; FTSZ, septum, coi 76.4 23 0.00079 27.0 9.6 58 99-156 20-77 (81)
39 3frt_A Charged multivesicular 75.7 23 0.00078 31.7 10.6 63 99-171 7-69 (218)
40 3s4r_A Vimentin; alpha-helix, 74.4 28 0.00095 26.9 12.9 83 114-210 10-92 (93)
41 3oja_A Leucine-rich immune mol 72.9 71 0.0024 30.9 14.9 8 78-85 303-310 (487)
42 2i1j_A Moesin; FERM, coiled-co 72.3 3.4 0.00012 42.2 4.8 25 269-293 504-529 (575)
43 3ghg_C Fibrinogen gamma chain; 70.6 23 0.00079 34.7 10.1 45 165-216 89-133 (411)
44 3ol1_A Vimentin; structural ge 70.6 40 0.0014 27.1 15.5 32 102-133 37-68 (119)
45 3ghg_B Fibrinogen beta chain; 69.4 66 0.0022 32.0 13.1 39 104-142 93-131 (461)
46 3efg_A Protein SLYX homolog; x 69.0 22 0.00076 26.7 7.6 48 172-219 12-59 (78)
47 3mq7_A Bone marrow stromal ant 68.6 46 0.0016 27.0 13.6 40 168-207 72-111 (121)
48 1jcd_A Major outer membrane li 68.1 28 0.00094 24.3 7.9 28 175-202 5-32 (52)
49 2b9c_A Striated-muscle alpha t 67.9 53 0.0018 27.5 16.4 100 111-215 22-121 (147)
50 2efr_A General control protein 67.9 56 0.0019 27.7 22.3 15 104-118 40-54 (155)
51 3hnw_A Uncharacterized protein 67.8 51 0.0017 27.3 10.4 36 173-208 95-130 (138)
52 3m91_A Proteasome-associated A 66.7 29 0.001 24.0 7.2 42 173-214 8-49 (51)
53 1zbt_A RF-1, peptide chain rel 64.9 24 0.00081 34.2 8.7 32 73-105 10-41 (371)
54 1ic2_A Tropomyosin alpha chain 63.4 44 0.0015 24.9 9.8 31 182-212 28-58 (81)
55 3swk_A Vimentin; cytoskeleton, 63.1 47 0.0016 25.2 11.2 80 117-215 4-83 (86)
56 1gd2_E Transcription factor PA 63.1 14 0.00047 27.3 5.3 35 171-205 33-67 (70)
57 2xdj_A Uncharacterized protein 62.8 48 0.0016 25.1 8.8 35 177-211 23-57 (83)
58 3hfe_A Potassium voltage-gated 62.1 11 0.00036 23.5 3.7 25 236-260 5-29 (31)
59 3efg_A Protein SLYX homolog; x 61.4 24 0.00082 26.5 6.5 48 168-215 15-62 (78)
60 2xdj_A Uncharacterized protein 60.4 53 0.0018 24.9 9.1 35 183-217 22-56 (83)
61 1lwu_C Fibrinogen gamma chain; 59.5 28 0.00094 33.0 8.0 47 170-216 8-54 (323)
62 1m1j_C Fibrinogen gamma chain; 57.7 84 0.0029 30.7 11.4 44 165-208 89-132 (409)
63 3hnw_A Uncharacterized protein 57.5 80 0.0027 26.0 14.2 18 77-94 28-45 (138)
64 2yy0_A C-MYC-binding protein; 53.6 27 0.00092 24.3 5.2 27 190-216 21-47 (53)
65 2jee_A YIIU; FTSZ, septum, coi 52.8 73 0.0025 24.2 10.7 42 173-214 26-67 (81)
66 1fxk_C Protein (prefoldin); ar 52.7 87 0.003 25.0 10.4 36 173-208 94-129 (133)
67 1m1j_A Fibrinogen alpha subuni 52.7 96 0.0033 30.8 10.7 22 78-99 55-76 (491)
68 3nmd_A CGMP dependent protein 52.0 52 0.0018 24.5 6.7 30 183-212 35-64 (72)
69 3fpp_A Macrolide-specific effl 50.3 36 0.0012 31.2 7.2 20 105-124 68-87 (341)
70 2ke4_A CDC42-interacting prote 50.3 88 0.003 24.4 9.6 31 179-209 60-90 (98)
71 4dk0_A Putative MACA; alpha-ha 49.8 23 0.00078 32.9 5.8 16 107-122 71-86 (369)
72 3mud_A DNA repair protein XRCC 48.5 70 0.0024 27.7 8.1 50 94-143 116-165 (175)
73 1y4c_A Maltose binding protein 48.2 1.6E+02 0.0056 28.7 12.0 97 101-200 389-491 (494)
74 3a7p_A Autophagy protein 16; c 48.2 1.2E+02 0.0043 25.5 9.8 26 192-217 107-132 (152)
75 1lwu_C Fibrinogen gamma chain; 47.9 60 0.0021 30.7 8.3 22 187-208 32-53 (323)
76 4e61_A Protein BIM1; EB1-like 46.8 81 0.0028 25.1 7.6 46 176-221 6-51 (106)
77 1cii_A Colicin IA; bacteriocin 45.9 2.4E+02 0.0083 28.2 20.6 60 236-295 468-541 (602)
78 3qne_A Seryl-tRNA synthetase, 44.9 1.2E+02 0.0042 30.2 10.4 30 129-158 42-71 (485)
79 2no2_A HIP-I, huntingtin-inter 43.3 1.2E+02 0.0041 23.9 15.4 31 110-140 12-42 (107)
80 2yy0_A C-MYC-binding protein; 42.4 41 0.0014 23.3 4.7 30 175-204 20-49 (53)
81 2wt7_B Transcription factor MA 42.2 65 0.0022 24.9 6.2 13 188-200 62-74 (90)
82 1t2k_D Cyclic-AMP-dependent tr 41.6 87 0.003 21.8 6.6 26 180-205 28-53 (61)
83 2l5g_B Putative uncharacterize 40.8 78 0.0027 21.0 5.5 27 189-215 10-36 (42)
84 3m9b_A Proteasome-associated A 40.6 34 0.0012 31.3 5.1 41 175-215 55-95 (251)
85 3rkg_A Magnesium transporter M 40.6 1.2E+02 0.0042 27.6 9.0 54 154-207 193-246 (261)
86 1gmj_A ATPase inhibitor; coile 40.6 1.2E+02 0.0041 23.1 8.2 26 183-208 53-78 (84)
87 2dq0_A Seryl-tRNA synthetase; 40.1 1.8E+02 0.006 28.6 10.7 32 127-158 38-69 (455)
88 3nmd_A CGMP dependent protein 40.0 77 0.0026 23.5 6.0 27 173-199 39-65 (72)
89 3w03_C DNA repair protein XRCC 40.0 84 0.0029 27.4 7.3 51 94-144 133-183 (184)
90 3fpp_A Macrolide-specific effl 39.9 37 0.0013 31.1 5.5 26 110-135 66-91 (341)
91 1fzc_C Fibrin; blood coagulati 39.4 18 0.00062 34.3 3.2 42 166-214 3-44 (319)
92 1gd2_E Transcription factor PA 39.3 61 0.0021 23.8 5.4 41 173-213 28-68 (70)
93 2l5g_A GPS2 protein, G protein 39.1 78 0.0027 20.5 5.2 27 189-215 9-35 (38)
94 3q8t_A Beclin-1; autophagy, AT 38.7 1.3E+02 0.0046 23.1 14.4 35 178-212 57-91 (96)
95 1m1j_B Fibrinogen beta chain; 38.3 3.1E+02 0.01 27.2 14.8 47 103-149 104-150 (464)
96 1ci6_A Transcription factor AT 36.4 1E+02 0.0035 21.8 6.2 24 191-214 33-56 (63)
97 2i1j_A Moesin; FERM, coiled-co 36.3 53 0.0018 33.3 6.3 16 78-93 276-291 (575)
98 3trt_A Vimentin; cytoskeleton, 36.3 1.2E+02 0.0041 21.9 9.3 22 190-211 51-72 (77)
99 3bvo_A CO-chaperone protein HS 36.0 2.2E+02 0.0074 24.8 10.2 49 132-180 153-201 (207)
100 2ocy_A RAB guanine nucleotide 35.4 2E+02 0.0069 24.2 18.0 18 110-127 17-34 (154)
101 3uo3_A J-type CO-chaperone JAC 35.0 2.1E+02 0.0072 24.3 9.5 71 99-179 100-170 (181)
102 4dk0_A Putative MACA; alpha-ha 34.9 46 0.0016 30.7 5.3 26 110-135 67-92 (369)
103 2lf0_A Uncharacterized protein 34.4 1E+02 0.0034 25.1 6.3 51 132-182 8-58 (123)
104 3i00_A HIP-I, huntingtin-inter 34.2 1.8E+02 0.0063 23.4 12.0 48 101-148 14-61 (120)
105 1ci6_A Transcription factor AT 33.9 1.2E+02 0.0042 21.4 6.3 34 176-209 25-58 (63)
106 2k48_A Nucleoprotein; viral pr 33.6 1.8E+02 0.0061 23.1 8.8 51 166-216 34-103 (107)
107 3lbx_A Spectrin alpha chain, e 33.6 2E+02 0.0067 23.6 13.4 117 99-217 29-149 (161)
108 2zqm_A Prefoldin beta subunit 32.7 1.7E+02 0.0057 22.5 10.6 35 109-143 9-43 (117)
109 1g6u_A Domain swapped dimer; d 32.4 1.1E+02 0.0037 20.2 6.1 25 190-214 22-46 (48)
110 1fxk_C Protein (prefoldin); ar 32.4 1.1E+02 0.0037 24.4 6.6 41 176-216 3-43 (133)
111 1wle_A Seryl-tRNA synthetase; 31.6 3E+02 0.01 27.3 10.9 20 192-211 127-146 (501)
112 2wt7_B Transcription factor MA 31.5 1.1E+02 0.0039 23.5 6.0 37 169-205 50-86 (90)
113 1fxk_A Prefoldin; archaeal pro 31.1 1.7E+02 0.0058 22.0 9.8 37 109-145 4-40 (107)
114 3cvf_A Homer-3, homer protein 31.0 1.1E+02 0.0038 23.0 5.8 34 182-215 14-47 (79)
115 3jsv_C NF-kappa-B essential mo 30.9 1.9E+02 0.0064 22.5 10.6 44 167-210 40-83 (94)
116 2f1m_A Acriflavine resistance 30.3 1.2E+02 0.0041 26.7 7.1 6 96-101 52-57 (277)
117 1fzc_C Fibrin; blood coagulati 29.5 33 0.0011 32.5 3.2 28 187-214 10-37 (319)
118 3vmx_A Voltage-gated hydrogen 29.1 1.4E+02 0.0047 20.4 6.6 36 173-208 3-38 (48)
119 4fi5_A Nucleoprotein; structur 28.9 2.2E+02 0.0076 22.7 8.3 20 136-155 24-43 (113)
120 3lay_A Zinc resistance-associa 28.6 2.8E+02 0.0094 23.7 10.7 18 196-213 114-131 (175)
121 2e7s_A RAB guanine nucleotide 28.6 2.5E+02 0.0085 23.2 8.2 24 174-197 103-126 (135)
122 3ibp_A Chromosome partition pr 28.4 3.7E+02 0.013 25.1 10.3 112 182-293 4-122 (302)
123 1hji_B NUN-protein; bacterioph 27.7 61 0.0021 18.9 2.9 18 140-157 9-26 (26)
124 3q8t_A Beclin-1; autophagy, AT 27.5 2.1E+02 0.0071 22.0 15.7 33 105-137 10-42 (96)
125 2fxo_A Myosin heavy chain, car 27.2 2.4E+02 0.0082 22.5 16.4 94 109-207 30-123 (129)
126 3trt_A Vimentin; cytoskeleton, 27.1 1.8E+02 0.006 20.9 10.3 25 183-207 51-75 (77)
127 2zdi_C Prefoldin subunit alpha 27.1 2.5E+02 0.0087 22.8 8.3 41 107-147 10-53 (151)
128 1fxk_A Prefoldin; archaeal pro 27.1 2E+02 0.0069 21.6 7.1 31 179-209 70-100 (107)
129 3abh_A Pacsin2, protein kinase 26.5 3.5E+02 0.012 24.2 20.2 45 109-153 139-183 (312)
130 4etp_A Kinesin-like protein KA 26.2 2.1E+02 0.0073 27.5 8.5 43 172-214 8-50 (403)
131 1jcd_A Major outer membrane li 26.0 1.7E+02 0.0056 20.3 7.9 44 182-227 5-48 (52)
132 3vp9_A General transcriptional 25.9 2.3E+02 0.0078 21.9 7.1 37 170-206 39-75 (92)
133 2p22_C Protein SRN2; endosome, 25.7 3.3E+02 0.011 23.6 15.7 68 81-149 42-112 (192)
134 3viq_A SWI5-dependent recombin 25.6 1.6E+02 0.0053 23.9 6.2 45 104-154 12-56 (122)
135 3aco_A Pacsin2, protein kinase 25.6 3.9E+02 0.013 24.4 15.8 21 239-259 270-290 (350)
136 2yko_A LINE-1 ORF1P; RNA-bindi 25.2 1.5E+02 0.0052 26.7 6.6 42 169-210 8-49 (233)
137 3jsv_C NF-kappa-B essential mo 25.2 2.4E+02 0.0082 21.9 7.2 13 279-291 72-84 (94)
138 2w6a_A ARF GTPase-activating p 25.1 1.9E+02 0.0065 20.6 8.6 47 169-215 15-61 (63)
139 1nov_D Nodamura virus coat pro 25.1 47 0.0016 22.2 2.4 33 77-110 2-34 (44)
140 1vcs_A Vesicle transport throu 25.1 2.3E+02 0.008 21.7 7.4 23 199-221 71-93 (102)
141 3o0z_A RHO-associated protein 25.0 3.2E+02 0.011 23.3 19.9 50 166-215 89-138 (168)
142 3htk_A Structural maintenance 25.0 1.7E+02 0.0057 20.0 8.0 50 101-150 7-56 (60)
143 4etp_A Kinesin-like protein KA 24.8 2.4E+02 0.0082 27.1 8.5 19 183-201 26-44 (403)
144 2e7s_A RAB guanine nucleotide 24.5 83 0.0028 26.1 4.4 18 113-130 8-25 (135)
145 3c9i_A Tail needle protein GP2 24.2 3.8E+02 0.013 23.8 11.2 65 133-216 83-147 (242)
146 2z2q_B Coat protein gamma; wil 24.2 50 0.0017 22.1 2.4 34 77-111 2-35 (44)
147 2v66_B Nuclear distribution pr 24.1 2.7E+02 0.0093 22.1 14.5 68 129-211 5-72 (111)
148 1nkp_B MAX protein, MYC proto- 23.9 1.4E+02 0.0047 22.0 5.3 27 190-216 49-75 (83)
149 1avy_A Fibritin, gpwac M; bact 23.5 2.2E+02 0.0077 20.9 6.0 32 176-207 10-41 (74)
150 3lss_A Seryl-tRNA synthetase; 23.5 5.2E+02 0.018 25.6 10.8 24 190-213 113-136 (484)
151 4emc_A Monopolin complex subun 23.3 1.8E+02 0.006 25.5 6.4 41 182-222 14-54 (190)
152 1fmh_A General control protein 23.3 1.3E+02 0.0046 18.3 4.8 28 115-142 3-30 (33)
153 3ghg_B Fibrinogen beta chain; 23.3 5.5E+02 0.019 25.4 13.8 21 190-210 165-185 (461)
154 2ic6_A Nucleocapsid protein; h 23.1 2.4E+02 0.0082 21.1 8.3 19 197-215 54-72 (78)
155 2pms_C Pneumococcal surface pr 23.1 2.4E+02 0.0083 23.0 6.9 35 131-165 10-44 (125)
156 1kd8_A GABH AIV, GCN4 acid bas 22.7 1.5E+02 0.0052 18.9 4.3 21 173-193 7-27 (36)
157 1m1j_A Fibrinogen alpha subuni 22.6 5.8E+02 0.02 25.3 16.2 27 51-77 14-43 (491)
158 1gmj_A ATPase inhibitor; coile 22.5 2.6E+02 0.0088 21.3 9.0 25 190-214 53-77 (84)
159 2oqq_A Transcription factor HY 22.5 1.8E+02 0.006 19.3 5.7 21 190-210 12-32 (42)
160 3iox_A AGI/II, PA; alpha helix 22.2 5.9E+02 0.02 25.4 14.8 66 147-212 32-97 (497)
161 3swk_A Vimentin; cytoskeleton, 22.0 2.5E+02 0.0087 21.0 6.9 36 178-213 4-39 (86)
162 2xz3_A Maltose ABC transporter 22.0 5.1E+02 0.017 24.5 12.0 46 153-198 372-417 (463)
163 2zvf_A Alanyl-tRNA synthetase; 21.7 1.8E+02 0.006 23.9 6.1 29 185-213 29-57 (171)
164 2w83_C C-JUN-amino-terminal ki 21.5 1.9E+02 0.0066 21.6 5.4 33 176-208 39-71 (77)
165 1l8d_A DNA double-strand break 21.5 2.7E+02 0.0093 21.2 12.8 33 172-204 69-101 (112)
166 1nlw_A MAD protein, MAX dimeri 21.4 2.5E+02 0.0085 20.7 6.4 10 143-152 16-25 (80)
167 2l5g_B Putative uncharacterize 21.4 1.9E+02 0.0064 19.2 5.5 26 182-207 10-35 (42)
168 3he5_A Synzip1; heterodimeric 21.4 1.8E+02 0.0063 19.1 6.8 40 171-210 7-46 (49)
169 2zdi_C Prefoldin subunit alpha 21.3 2.2E+02 0.0075 23.2 6.6 35 173-207 104-138 (151)
170 3i2w_A Syndapin, LD46328P; EFC 21.3 4.2E+02 0.015 23.3 14.0 19 240-258 249-267 (290)
171 2x3v_A Syndapin I, protein kin 21.0 4.6E+02 0.016 23.6 20.2 37 109-145 130-166 (337)
172 2gd5_A Charged multivesicular 21.0 3.7E+02 0.013 22.5 11.7 23 99-121 14-36 (179)
173 1t3j_A Mitofusin 1; coiled coi 20.9 2.6E+02 0.009 21.7 6.4 11 78-88 37-47 (96)
174 3qne_A Seryl-tRNA synthetase, 20.4 6.3E+02 0.022 25.0 12.1 14 157-170 13-26 (485)
No 1
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=97.14 E-value=0.029 Score=55.28 Aligned_cols=121 Identities=15% Similarity=0.129 Sum_probs=83.5
Q ss_pred hHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019853 78 LFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKG 157 (335)
Q Consensus 78 if~Rl~~lira~in~~ldk~EDPe~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G 157 (335)
-+..+.+++...+..++..-.||+..|+.+..++++.|.+.+... +..--...+++++.+++....+.+.+|-.|-..
T Consensus 349 ~~~~~~~~~~~~~~~vl~G~~t~eeal~~~~~~i~~~l~~~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 426 (471)
T 3mq9_A 349 QMSAFWYAVRTAVINAASGRQTVDEALKDAQTRITAARDGLRAVM-EARNVTHLLQQELTEAQKGFQDVEAQAATANHT- 426 (471)
T ss_dssp THHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred cHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhHHHH-HhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchh-
Confidence 356778888888899988888999999999999999998876554 667778889999999999999999998876322
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 158 EEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 214 (335)
Q Consensus 158 ~EdLAreAL~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~L 214 (335)
...-..+++..+..-+ ..+.+|+.++.++.++|++++.+.+.+
T Consensus 427 -------~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (471)
T 3mq9_A 427 -------VMALMASLDAEKAQGQ-------KKVEELEGEITTLNHKLQDASAEVERL 469 (471)
T ss_dssp -------HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2222333333333322 344444444445555555544444433
No 2
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=97.04 E-value=0.013 Score=44.93 Aligned_cols=74 Identities=20% Similarity=0.206 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 119 RQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNL 193 (335)
Q Consensus 119 r~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~le~qle~~~~~v~~L 193 (335)
+.++..+......|+++...++..++.-...|+..+ .++-.-|..||.+|+.||.++..+..++..++.++..+
T Consensus 5 ~~AI~~Lr~~~d~L~kkq~~L~~~i~~e~~~Ak~~~-~knK~~Al~aLkrKK~~E~qL~q~~~ql~~LE~q~~~i 78 (79)
T 4abm_A 5 QEAIQRLRDTEEMLSKKQEFLEKKIEQELTAAKKHG-TKNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREAL 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445555556666777888888888888889999988 55567999999999999999999999999888887655
No 3
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=96.83 E-value=0.0074 Score=54.81 Aligned_cols=40 Identities=18% Similarity=0.258 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Q 019853 128 SQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALK 167 (335)
Q Consensus 128 ~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~ 167 (335)
..+.|.+++..++.+-.+.....+.|.++|+.+-||-.+.
T Consensus 22 ~~R~LdR~~~kle~eEkk~~~~IKkaakkg~~~~arilAk 61 (218)
T 3frt_A 22 EMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAK 61 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3455667777777788888889999999999988776544
No 4
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.24 E-value=0.69 Score=42.28 Aligned_cols=145 Identities=8% Similarity=0.083 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKA 181 (335)
Q Consensus 102 ~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~le~ 181 (335)
.-|+..+..+...+..++..+..+-...++++..+......+.+++.+-.. +...+|=-| ...++..++..+..++.
T Consensus 35 ~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~-v~~~kE~~a--L~kEie~~~~~i~~lE~ 111 (256)
T 3na7_A 35 DKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSE-IKSERELRS--LNIEEDIAKERSNQANR 111 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSSSSHHHH--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cCCHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 445556666666666666677777777777777777777777777766642 333333211 22333444444444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Q 019853 182 QLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSA---------KTATKVSEMLGNVNTSSALSAFEKMEEKV 250 (335)
Q Consensus 182 qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~~~A---------kAq~~v~~~~~~~~~~~a~~~feRmEeki 250 (335)
.+..+...++.++..+..++.++.+++......++..... ....+-.....++ .......++|++...
T Consensus 112 eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~r~~l~~~i-~~~lL~~Yerir~~~ 188 (256)
T 3na7_A 112 EIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKKKEDLVEKT-EPKIYSFYERIRRWA 188 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhC
Confidence 5444444444444444444444444444444443332222 1122223333444 235567777776643
No 5
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=96.08 E-value=0.018 Score=50.37 Aligned_cols=51 Identities=16% Similarity=0.354 Sum_probs=29.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Q 019853 99 DPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAR 163 (335)
Q Consensus 99 DPe~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAr 163 (335)
||...|...++.++.... .|.+++..++.+-.+.....+.|.++|+.+-||
T Consensus 7 ~p~e~lr~~~~~L~~~~r--------------~Ldr~~~kle~~ekk~~~~Ikka~k~g~~~~ak 57 (179)
T 2gd5_A 7 PPKELVNEWSLKIRKEMR--------------VVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCI 57 (179)
T ss_dssp -CCCHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 565555544444444443 344455555555556666668888999988444
No 6
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=96.07 E-value=0.49 Score=39.06 Aligned_cols=112 Identities=19% Similarity=0.298 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhcCcHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL--ALQKGEEDLAREALKRRKSYADNANALKA 181 (335)
Q Consensus 104 LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~--AL~~G~EdLAreAL~rk~~~e~q~~~le~ 181 (335)
-+-.+..+.+.+.+++..+.......+.++.++..+..+..++..+... .+-..-++.-.....++..++..+..+..
T Consensus 11 ~e~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~ 90 (129)
T 2fxo_A 11 REKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNK 90 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888999999999998889999999888888888776655432 33333356666777888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 182 QLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (335)
Q Consensus 182 qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~Lk 215 (335)
.++........|...-.+++..+.+++...+.+-
T Consensus 91 rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e 124 (129)
T 2fxo_A 91 RLEDEEEMNAELTAKKRKLEDECSELKRDIDDLE 124 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988887764
No 7
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=95.56 E-value=0.66 Score=46.63 Aligned_cols=106 Identities=15% Similarity=0.231 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---cHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 019853 111 MNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKG---EEDLA---REALKRRKSYADNANALKAQLD 184 (335)
Q Consensus 111 me~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G---~EdLA---reAL~rk~~~e~q~~~le~qle 184 (335)
+++++.+.+..+..+.....+.++.+...+.+++++..........= .+.+- ...-++.+..+.....++++++
T Consensus 454 l~~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (597)
T 3oja_B 454 LEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEAD 533 (597)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhh
Confidence 34456666666666666666666666666666665544433110000 01111 1122233333344444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 185 QQKNVVNNLVSNTRLLESKIQEARSKKDTLKA 216 (335)
Q Consensus 185 ~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkA 216 (335)
+.....++++....+++.++++.+.+...++-
T Consensus 534 ~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~ 565 (597)
T 3oja_B 534 AKQKETEDLEQENIALEKQLDNKRAKQAELRQ 565 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcchhhHHhhhHHHHHHHhhhhhHHHHHHH
Confidence 44444455555555555555555555555543
No 8
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=94.75 E-value=0.18 Score=55.83 Aligned_cols=108 Identities=11% Similarity=0.197 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 106 QAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQ---KGEEDLAREALKRRKSYADNANALKAQ 182 (335)
Q Consensus 106 Q~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~---~G~EdLAreAL~rk~~~e~q~~~le~q 182 (335)
..|+++++.+.+++..+..+......++.++..++.+..+.......... .-.+.+ .....++..++.++..++.+
T Consensus 857 ~El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l-~~l~~~~~~Le~~l~ele~e 935 (1184)
T 1i84_S 857 EEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMR-VRLAAKKQELEEILHEMEAR 935 (1184)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666665555555566666555555554432221110 000111 11223344444444455554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 183 LDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 214 (335)
Q Consensus 183 le~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~L 214 (335)
++........+...+..++.++.+++.+++.+
T Consensus 936 lee~ee~l~el~~e~~~le~el~~L~~eleel 967 (1184)
T 1i84_S 936 IEEEEERSQQLQAEKKKMQQQMLDLEEQLEEE 967 (1184)
T ss_dssp HHHHHHC-------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444443
No 9
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=93.97 E-value=5.1 Score=48.79 Aligned_cols=83 Identities=16% Similarity=0.204 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCCCcHHHHHHHHHHH
Q 019853 171 SYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKV-SEMLGNVNTSSALSAFEKMEEK 249 (335)
Q Consensus 171 ~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~~~AkAq~~v-~~~~~~~~~~~a~~~feRmEek 249 (335)
.++.++...++.+...+..+..+.+.+..|+.+++++..+++.|+......+.+-.- ...++++ .+.=.|+.+.
T Consensus 2018 ~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL-----~~Ek~RW~~~ 2092 (3245)
T 3vkg_A 2018 QLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNL-----NSERGRWEQQ 2092 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhccccHHHH
Confidence 344455555555555555555555566666666666666666665554443322211 1222333 3455677777
Q ss_pred HHhHHHHHH
Q 019853 250 VLTMESQAD 258 (335)
Q Consensus 250 i~~~EA~Ae 258 (335)
+.....+..
T Consensus 2093 ~~~l~~~~~ 2101 (3245)
T 3vkg_A 2093 SENFNTQMS 2101 (3245)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777665554
No 10
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=93.90 E-value=0.31 Score=53.94 Aligned_cols=41 Identities=15% Similarity=0.203 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 113 DDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA 153 (335)
Q Consensus 113 ~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~A 153 (335)
..+.+.+..+..+...-..++..+.+++.+...++.+...+
T Consensus 857 ~El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l 897 (1184)
T 1i84_S 857 EEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLL 897 (1184)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555555555555555555554444
No 11
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=92.46 E-value=8.8 Score=46.82 Aligned_cols=59 Identities=15% Similarity=0.177 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 163 REALKRRKSYADNANA------LKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSA 221 (335)
Q Consensus 163 reAL~rk~~~e~q~~~------le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~~~A 221 (335)
.++..++..+++.++. +++.++.++......+..+.+.+.+|.++..+...|++.+..+
T Consensus 1990 ~ei~~~k~~~e~dL~~A~Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~ 2054 (3245)
T 3vkg_A 1990 KEIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATL 2054 (3245)
T ss_dssp HHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555444433 3345555555555555555555555555555555555555444
No 12
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=92.04 E-value=3.4 Score=41.31 Aligned_cols=109 Identities=12% Similarity=0.098 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHhcCcHHHHHHHHHHHHHHHH
Q 019853 105 EQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWY----------RKAQLALQKGEEDLAREALKRRKSYAD 174 (335)
Q Consensus 105 dQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e----------~rA~~AL~~G~EdLAreAL~rk~~~e~ 174 (335)
.+.+.+.+..+.+++..+....+.....+.++++.. ..+. ++....+++-.+ .....+.+.+..++
T Consensus 455 ~~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~ 530 (597)
T 3oja_B 455 EAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNL---RRYRLPKDGLARSSDNLNKVFTHLKE-RQAFKLRETQARRT 530 (597)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHTTCCCCSSSCHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---hhcCccccccCCHHHHHHHHHHHHHh-hhhhhHHHHHHHHH
Confidence 334555555555555555554444444444433332 2333 333333333222 22234455566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 175 NANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 217 (335)
Q Consensus 175 q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr 217 (335)
++...+.+++.+++....++..++..+.++.+++++...+++.
T Consensus 531 ~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~ 573 (597)
T 3oja_B 531 EADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQK 573 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 7777777777777777777777777777777777776665443
No 13
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=91.36 E-value=6.6 Score=33.97 Aligned_cols=114 Identities=12% Similarity=0.147 Sum_probs=78.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Q 019853 99 DPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANA 178 (335)
Q Consensus 99 DPe~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~ 178 (335)
|-...|+-.+.||.+.|..--.+.++..-....+...+..++..+.++.++... .-..+..++.++..
T Consensus 6 eKi~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~------------L~~~k~~Leke~~~ 73 (168)
T 3o0z_A 6 EKLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRI------------LENSKSQTDKDYYQ 73 (168)
T ss_dssp ----CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHH
Confidence 444556666777777777666666666555555666666666666666555443 33345566778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 179 LKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTA 224 (335)
Q Consensus 179 le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~~~AkAq 224 (335)
++.++++-...-.+...-+..|+.+|..+....+.++.+...+.+.
T Consensus 74 LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e 119 (168)
T 3o0z_A 74 LQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGE 119 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888888888888888888887776543
No 14
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=91.11 E-value=5.4 Score=32.48 Aligned_cols=83 Identities=12% Similarity=0.153 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 130 KRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARS 209 (335)
Q Consensus 130 k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~ 209 (335)
..|++++.+.++-...|+.+|-.+-+. ...=+.+++.....-..+++.++..+..|+..|++...+++.++.
T Consensus 28 ~lLq~qLTqAQe~l~~~eaQAaTCNqT--------V~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~ 99 (121)
T 3mq7_A 28 HLLQQELTEAQKGFQDVEAQAATANHT--------VMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRR 99 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456777788888888888777665332 111222222222222444555666666666666666666666666
Q ss_pred HHHHHHHHHHH
Q 019853 210 KKDTLKARAQS 220 (335)
Q Consensus 210 kr~~LkAr~~~ 220 (335)
.-..+..|...
T Consensus 100 ~~~~~~~r~~~ 110 (121)
T 3mq7_A 100 ENQVLSVRIAD 110 (121)
T ss_dssp HHHHHHHHHC-
T ss_pred hchhhhhHhhh
Confidence 66666555433
No 15
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=90.06 E-value=9.5 Score=33.60 Aligned_cols=110 Identities=14% Similarity=0.150 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 106 QAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQ 185 (335)
Q Consensus 106 Q~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~le~qle~ 185 (335)
....++.+.+.+++..+......-+.|+..++.--...++.......-+.. |-.+.-.-+..+.........++..
T Consensus 17 ~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~----L~~E~e~~k~K~~~~~~e~~~~~~~ 92 (189)
T 2v71_A 17 ELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQR----LKYEVEALKEKLEHQYAQSYKQVSV 92 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335566666666666666666666666655544333333333322222111 2222222222223332222333344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 186 QKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQ 219 (335)
Q Consensus 186 ~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~~ 219 (335)
+...+..|+.....|..+|.++...-+.|-...+
T Consensus 93 Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R 126 (189)
T 2v71_A 93 LEDDLSQTRAIKEQLHKYVRELEQANDDLERAKR 126 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4444444444444555555555555555543333
No 16
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=89.65 E-value=5.8 Score=30.52 Aligned_cols=46 Identities=20% Similarity=0.234 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRK 149 (335)
Q Consensus 104 LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~r 149 (335)
-+-.+..+++.+.+++..+.......+.++.++..+..+..++..+
T Consensus 12 ~eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 12 QEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778999999999999999999999999988888888887777
No 17
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=89.48 E-value=5.9 Score=38.46 Aligned_cols=63 Identities=5% Similarity=0.105 Sum_probs=50.8
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 019853 96 SFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGE 158 (335)
Q Consensus 96 k~EDPe~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~ 158 (335)
.+.|=+..+.|+-.+++..|.-++..|-..+.+-+.|+.-++.+..+|.+++-.+..+...=.
T Consensus 103 q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~Id~c~~~C~ 165 (390)
T 1deq_A 103 KANNNDNTFKQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDIDIKIRSCK 165 (390)
T ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 334556778888889999999999999888888888999999999999999888866555433
No 18
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=87.40 E-value=5.6 Score=40.17 Aligned_cols=98 Identities=10% Similarity=0.101 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 019853 105 EQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRK-SYADNANALKAQL 183 (335)
Q Consensus 105 dQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~-~~e~q~~~le~ql 183 (335)
+-.=+|+..-|.++|..+.++....+....-+ +...+.|..+...+. +++. ...+.. +++.++..|+..+
T Consensus 56 dkqErDltkrINELKnqLEdlsKnsKdseqy~---k~~~E~Lr~rq~q~~--dNdN----tynE~S~ELRRrIqyLKekV 126 (562)
T 3ghg_A 56 DEVNQDFTNRINKLKNSLFEYQKNNKDSHSLT---TNIMEILRGDFSSAN--NRDN----TYNRVSEDLRSRIEVLKRKV 126 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH---HHHHHTTSSHHHHHH--HHHH----HHHHTTHHHHHHHHHHHHHH
T ss_pred HhhcCcHHHHHHHHHHHHHHHHhhchhHHHHH---HHHHHHHHHHHHhhh--ccch----hHHHHHHHHHHHHHHHHHHH
Confidence 33344555566666666665544444444443 333444444444433 1111 222222 4455555566655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 184 DQQKNVVNNLVSNTRLLESKIQEARSKK 211 (335)
Q Consensus 184 e~~~~~v~~Lk~~l~~Le~ki~e~k~kr 211 (335)
+.+-.++..|+..|+.+..+|+.++.-+
T Consensus 127 dnQlsnIrvLQsnLedq~~kIQRLEvDI 154 (562)
T 3ghg_A 127 IEKVQHIQLLQKNVRAQLVDMKRLEVDI 154 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555544433
No 19
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=86.82 E-value=14 Score=31.52 Aligned_cols=50 Identities=14% Similarity=0.218 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 166 LKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (335)
Q Consensus 166 L~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~Lk 215 (335)
-++...|+.++..+...+..+....+.....+.+|+..|..+..++..-+
T Consensus 69 sqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~K 118 (155)
T 2efr_A 69 SQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQK 118 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556555555555555555555555555555555544444433
No 20
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=86.34 E-value=12 Score=30.40 Aligned_cols=105 Identities=11% Similarity=0.141 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQL 183 (335)
Q Consensus 104 LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~le~ql 183 (335)
|+..+.=.+....++...++.+.......+.++..+.....+|..+.......|= .......+..-+..|...+
T Consensus 10 L~~ll~l~~~~ed~a~~~l~~a~~~~~~~~~~L~~L~~~~~~y~~~~~~~~~~g~------~~~~l~~~~~fi~~L~~~I 83 (150)
T 3ajw_A 10 LETLKDLAEKEVDDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRSNLNTDMGNGI------ASNRWINYQQFIQTLEKAI 83 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC--CCSGG------GHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHHHHH
Confidence 3333444556667778888888888888888888888888877765544333332 1233345555666777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 184 DQQKNVVNNLVSNTRLLESKIQEARSKKDTL 214 (335)
Q Consensus 184 e~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~L 214 (335)
+.+...+..+...+......+.+...++..+
T Consensus 84 ~~q~~~l~~~~~~~e~~r~~l~~a~~~~k~~ 114 (150)
T 3ajw_A 84 EQHRLQLTQWTQKVDLALKSWREKKQRLQAW 114 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777776666666665555543
No 21
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=85.98 E-value=19 Score=32.45 Aligned_cols=120 Identities=17% Similarity=0.111 Sum_probs=78.7
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Q 019853 88 SYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALK 167 (335)
Q Consensus 88 a~in~~ldk~EDPe~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~ 167 (335)
..+..-++.++.-..-|-..|.++++.+..++..+..+......++.++..++..+.....++...-.+-. -++
T Consensus 14 Q~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~--~v~---- 87 (256)
T 3na7_A 14 SHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMS--EIK---- 87 (256)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCS----
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--ccC----
Confidence 34555666766666667788889999999999999988888888888888888888888877766433211 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 168 RRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 217 (335)
Q Consensus 168 rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr 217 (335)
-...+..+..+++.++..+..+...+..+..+++..+.....+..+
T Consensus 88 ----~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~ 133 (256)
T 3na7_A 88 ----SERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKE 133 (256)
T ss_dssp ----SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2334455555555555555555555555555555555555544443
No 22
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=85.38 E-value=28 Score=34.86 Aligned_cols=80 Identities=14% Similarity=0.194 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 110 EMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNV 189 (335)
Q Consensus 110 eme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~le~qle~~~~~ 189 (335)
+.+..|......|++|...-..++..|+....+...- -.++++-++.+-+.-...++.|+..+..|++.++.....
T Consensus 6 ~yq~~la~yq~elarvqkana~aka~Ye~~~ae~~a~----n~~i~aeNeaikkrNa~aka~Ye~~l~kY~~dlakY~~~ 81 (497)
T 3iox_A 6 DYQAKLTAYQTELARVQKANADAKAAYEAAVAANNAA----NAALTAENTAIKKRNADAKADYEAKLAKYQADLAKYQKD 81 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777777778877766666666555544433221 122444555555556666777777777777766666554
Q ss_pred HHHH
Q 019853 190 VNNL 193 (335)
Q Consensus 190 v~~L 193 (335)
....
T Consensus 82 ~AeY 85 (497)
T 3iox_A 82 LADY 85 (497)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
No 23
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=84.63 E-value=12 Score=29.49 Aligned_cols=64 Identities=17% Similarity=0.202 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 141 QASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQ 205 (335)
Q Consensus 141 ~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~ 205 (335)
..+.+.-.+|+.|+..++.+.||.. .++.....++..-+.........+..|+..|..|+..|-
T Consensus 32 ~~A~dKl~~A~~Am~~~~y~~Ar~l-AEqAe~DArLAeAka~~~Ka~~~~~el~~~I~~LrqEl~ 95 (98)
T 4fm3_A 32 KLAQDKYAAAQIAMTAESYKKARLL-AEQAELDARLAESKVLTQKSKDQLGELDKSLKRLRKQLG 95 (98)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455566789999999999999865 455666777777777777777777777777766666553
No 24
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=84.41 E-value=20 Score=36.30 Aligned_cols=18 Identities=17% Similarity=0.154 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019853 185 QQKNVVNNLVSNTRLLES 202 (335)
Q Consensus 185 ~~~~~v~~Lk~~l~~Le~ 202 (335)
.++..|+.+...+++||-
T Consensus 135 vLQsnLedq~~kIQRLEv 152 (562)
T 3ghg_A 135 LLQKNVRAQLVDMKRLEV 152 (562)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333444433
No 25
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=84.25 E-value=13 Score=29.01 Aligned_cols=71 Identities=17% Similarity=0.266 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 132 LENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEA 207 (335)
Q Consensus 132 le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~ 207 (335)
++.++..+..+.+.|.++|..+-.. .+.+-.+....+..+..++..+..+...++.+...+.....++.+.
T Consensus 7 iKkKm~~lk~e~e~a~d~ae~~e~~-----~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ 77 (101)
T 3u59_A 7 IKKKMQMLKLDKENAIDRAEQAEAD-----KKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQA 77 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777788888887775332 2233333333444444444444444444444444444444444444
No 26
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=83.85 E-value=14 Score=28.99 Aligned_cols=70 Identities=17% Similarity=0.202 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 132 LENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQE 206 (335)
Q Consensus 132 le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e 206 (335)
++.++..+..+.+.|.++|..+-.. .+.+-.+....+..+..|...+..+...++.+...+.....++.+
T Consensus 7 IKkKm~~lk~e~e~a~drae~~e~~-----~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee 76 (101)
T 3u1c_A 7 IKKKMQMLKLDKENALDRAEQAEAD-----KKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLF 76 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777777765322 222333333334444444444444444444444444333333333
No 27
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=83.59 E-value=38 Score=33.75 Aligned_cols=41 Identities=10% Similarity=0.277 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASE 144 (335)
Q Consensus 104 LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~ 144 (335)
++..|.+|++.|.++......+.-..+.++..++..+.++.
T Consensus 98 V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~ 138 (464)
T 1m1j_B 98 VKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRK 138 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhccccccc
Confidence 55556666666666654444333333334444444444333
No 28
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=83.11 E-value=17 Score=29.35 Aligned_cols=91 Identities=15% Similarity=0.164 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKA 181 (335)
Q Consensus 102 ~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~le~ 181 (335)
.+.+.+|.+++.+|..+...-+++..+ +..++..++++..+-..- + ..+...|..+..+
T Consensus 16 ~~ye~~I~~LR~qid~~~~e~a~l~le-------ldn~~~~~edfk~KyE~E-------~-----~~r~~~E~di~~l-- 74 (119)
T 3ol1_A 16 DLYEEEMRELRRQVDQLTNDKARVEVE-------RDNLAEDIMRLREKLQEE-------M-----LQREEAENTLQSF-- 74 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH-------H-----HHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhHHH-------H-----HHHHHHHHHHHHh--
Confidence 567777778777777776665555444 444444444444433321 1 1233344444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 182 QLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARA 218 (335)
Q Consensus 182 qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~ 218 (335)
++.++...-.-..|+.+++.++.++.-|+.-.
T Consensus 75 -----rK~lD~~~l~r~dLE~~iesL~eEl~FLKk~h 106 (119)
T 3ol1_A 75 -----RQDVDNASLARLDLERKVESLQEEIAFLKKLH 106 (119)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----hhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555566666777776666666443
No 29
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=82.36 E-value=12 Score=41.23 Aligned_cols=16 Identities=25% Similarity=0.262 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 019853 129 QKRLENKCKAAEQASE 144 (335)
Q Consensus 129 ~k~le~kl~~~~~~~~ 144 (335)
...++.++.+++..++
T Consensus 923 ~~~LE~kl~eLq~rL~ 938 (1080)
T 2dfs_A 923 HIGLENKIMQLQRKID 938 (1080)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 30
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=82.11 E-value=18 Score=29.06 Aligned_cols=45 Identities=13% Similarity=0.316 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 166 LKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSK 210 (335)
Q Consensus 166 L~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~k 210 (335)
+.++.-++.|+..|+.....-...-+++......|+.+++.++.+
T Consensus 61 lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q 105 (110)
T 2v4h_A 61 METVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQRE 105 (110)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHH
Confidence 344555556666665555554444455555555555544444443
No 31
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=81.82 E-value=26 Score=30.73 Aligned_cols=118 Identities=14% Similarity=0.099 Sum_probs=72.9
Q ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Q 019853 84 RVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAR 163 (335)
Q Consensus 84 ~lira~in~~ldk~EDPe~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAr 163 (335)
.+++..++...+.+++-..-|+.+...-.+--.++...|.+.-...+.+..+...+..+++.|..+......
T Consensus 13 ~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~-------- 84 (189)
T 2v71_A 13 AYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYA-------- 84 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 345555666666666666666666655555555566666666666777777777777777777776644322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 164 EALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKA 216 (335)
Q Consensus 164 eAL~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkA 216 (335)
.+..++..|+.++..+......|+..++.|+..-.++.+......+
T Consensus 85 -------e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~ 130 (189)
T 2v71_A 85 -------QSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIM 130 (189)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 2233555555666666666666666666666666666666655553
No 32
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=81.56 E-value=40 Score=32.69 Aligned_cols=42 Identities=17% Similarity=0.147 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019853 116 VKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKG 157 (335)
Q Consensus 116 ~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G 157 (335)
...++.-......++.+++.+...+....+.......++..=
T Consensus 356 ~~~~~~~~~l~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~ 397 (487)
T 3oja_A 356 TLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQI 397 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhchh
Confidence 333333335555666677777777776666666666655443
No 33
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=80.89 E-value=15 Score=27.44 Aligned_cols=23 Identities=17% Similarity=0.187 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019853 132 LENKCKAAEQASEDWYRKAQLAL 154 (335)
Q Consensus 132 le~kl~~~~~~~~~~e~rA~~AL 154 (335)
++.++..+..+.+.|.+++..+-
T Consensus 4 ikkKm~~lk~e~d~a~~~~~~~e 26 (81)
T 1ic2_A 4 IKKKMQMLKLDKENALDRAEQAE 26 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777776653
No 34
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=80.80 E-value=8 Score=30.33 Aligned_cols=39 Identities=15% Similarity=0.218 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 108 VLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDW 146 (335)
Q Consensus 108 Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~ 146 (335)
+.+.++.+.+.+..+..+......++.++..+...+..+
T Consensus 5 ~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l 43 (112)
T 1l8d_A 5 LEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEEL 43 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555555555555555555555555666655555544
No 35
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=80.68 E-value=43 Score=32.45 Aligned_cols=40 Identities=15% Similarity=0.116 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 172 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKK 211 (335)
Q Consensus 172 ~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr 211 (335)
++.++.-|+..++.+-..+..|+..|+.+..+|+.++..+
T Consensus 118 Le~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 118 LRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444455555555555555555544444
No 36
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=78.70 E-value=49 Score=31.93 Aligned_cols=58 Identities=17% Similarity=0.179 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 168 RRKSYADNANALKAQLDQQKNVVNNLVSNTR----LLESKIQEARSKKDTLKARAQSAKTAT 225 (335)
Q Consensus 168 rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~----~Le~ki~e~k~kr~~LkAr~~~AkAq~ 225 (335)
+..++++....++.|.......|-.|...|. +-+.||++++.+...+....+-++|+.
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (471)
T 3mq9_A 405 ELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEV 466 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555554444433 234466666666666666655555543
No 37
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=78.55 E-value=32 Score=33.62 Aligned_cols=50 Identities=14% Similarity=0.210 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 166 LKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (335)
Q Consensus 166 L~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~Lk 215 (335)
.+......+++..|+..+......+..|+..+..++.+|+.++.+...|.
T Consensus 83 tq~skkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~ 132 (409)
T 1m1j_C 83 TQKSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLE 132 (409)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 33444555566666666666666677777777667777776666655554
No 38
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=76.42 E-value=23 Score=26.95 Aligned_cols=58 Identities=16% Similarity=0.303 Sum_probs=51.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019853 99 DPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQK 156 (335)
Q Consensus 99 DPe~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~ 156 (335)
|-+..|...|.++++.-..+......+...+..+.++..++..+...|..+...-|.+
T Consensus 20 dtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk 77 (81)
T 2jee_A 20 DTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGR 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567889999999999999999999999999999999999999999999998876543
No 39
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=75.71 E-value=23 Score=31.73 Aligned_cols=63 Identities=14% Similarity=0.312 Sum_probs=36.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 019853 99 DPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKS 171 (335)
Q Consensus 99 DPe~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~ 171 (335)
||...+...=|.++....++.+.+..+-..++.++.++..+...-..- -|+ -+|++++.-++.
T Consensus 7 ~p~e~~r~~~r~Lr~~~R~LdR~~~kle~eEkk~~~~IKkaakkg~~~--~ar--------ilAkelVR~Rk~ 69 (218)
T 3frt_A 7 PPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKD--VCI--------VLAKEMIRSRKA 69 (218)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH--HHH--------HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH--HHH--------HHHHHHHHHHHH
Confidence 676666666666666666666666666666666666666655443321 122 377777664443
No 40
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=74.39 E-value=28 Score=26.91 Aligned_cols=83 Identities=19% Similarity=0.224 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 114 DLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNL 193 (335)
Q Consensus 114 ~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~le~qle~~~~~v~~L 193 (335)
++..+..-+|..+-.-+.||++=..++.++..|..+-.. .-...|+..+..+..+++.....-..+
T Consensus 10 ~mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~~~~~--------------~~~~~ye~~i~~Lr~~i~~~~~ek~~l 75 (93)
T 3s4r_A 10 ELQELNDRFANLIDKVRFLEQQNKILLAELEQLKGQGKS--------------RLGDLYEEEMRELRRQVDQLTNDKARV 75 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--------------CcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566667777777777888877888777777654211 112336777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019853 194 VSNTRLLESKIQEARSK 210 (335)
Q Consensus 194 k~~l~~Le~ki~e~k~k 210 (335)
...+..|...+.+++.|
T Consensus 76 ~~e~dnl~~~~~~~k~K 92 (93)
T 3s4r_A 76 EVERDNLAEDIMRLREK 92 (93)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 77777777777776654
No 41
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=72.95 E-value=71 Score=30.93 Aligned_cols=8 Identities=38% Similarity=0.563 Sum_probs=3.9
Q ss_pred hHHHHHHH
Q 019853 78 LFDRLARV 85 (335)
Q Consensus 78 if~Rl~~l 85 (335)
+..|+..+
T Consensus 303 ~~~~l~~~ 310 (487)
T 3oja_A 303 FADRLIAL 310 (487)
T ss_dssp HHHHHHHH
T ss_pred hhhHHHHH
Confidence 34555444
No 42
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=72.27 E-value=3.4 Score=42.20 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=18.8
Q ss_pred hHHHhhhccC-CHHHHHHHHHHHcCC
Q 019853 269 EGKFALLETS-SVDDDLANLKKELSG 293 (335)
Q Consensus 269 e~k~a~le~~-~vddeLa~LKa~l~~ 293 (335)
+++...++++ .+.+.|..|+.++..
T Consensus 504 ~eR~~~~ekn~~lq~qL~~L~~el~~ 529 (575)
T 2i1j_A 504 ADRRTLAERNERLHNQLKALKQDLAR 529 (575)
T ss_dssp GGCCCHHHHCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 5555555655 599999999999865
No 43
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=70.63 E-value=23 Score=34.71 Aligned_cols=45 Identities=18% Similarity=0.161 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 165 ALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKA 216 (335)
Q Consensus 165 AL~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkA 216 (335)
-+.++..++..+.. +..++..|+..+.....+|.+++.....|..
T Consensus 89 ml~~~~~~~~~~~~-------~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~ 133 (411)
T 3ghg_C 89 MLEEIMKYEASILT-------HDSSIRYLQEIYNSNNQKIVNLKEKVAQLEA 133 (411)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455545444444 4444444444455555555555555554443
No 44
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=70.63 E-value=40 Score=27.08 Aligned_cols=32 Identities=13% Similarity=0.287 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLE 133 (335)
Q Consensus 102 ~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le 133 (335)
.-|.-.|..+...+...|.-.-.-++.+..++
T Consensus 37 a~l~leldn~~~~~edfk~KyE~E~~~r~~~E 68 (119)
T 3ol1_A 37 ARVEVERDNLAEDIMRLREKLQEEMLQREEAE 68 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34444555555555555554444333333333
No 45
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=69.37 E-value=66 Score=31.97 Aligned_cols=39 Identities=13% Similarity=0.236 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQA 142 (335)
Q Consensus 104 LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~ 142 (335)
++.-|.+|+..|.++......+--.-+.++..+...+..
T Consensus 93 V~~dl~~Le~~l~~isn~Ts~a~~~v~~ik~s~~~~q~~ 131 (461)
T 3ghg_B 93 IRNSVDELNNNVEAVSQTSSSSFQYMYLLKDLWQKRQKQ 131 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccCC
Confidence 455566666666666666555544444444444444433
No 46
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=69.02 E-value=22 Score=26.66 Aligned_cols=48 Identities=10% Similarity=-0.015 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 172 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQ 219 (335)
Q Consensus 172 ~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~~ 219 (335)
+++.+..|+..+.-++..++.|..-+......|..++.+...|..|..
T Consensus 12 le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~ 59 (78)
T 3efg_A 12 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLG 59 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555556666666665556666666666555555443
No 47
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=68.62 E-value=46 Score=27.01 Aligned_cols=40 Identities=15% Similarity=0.297 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 168 RRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEA 207 (335)
Q Consensus 168 rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~ 207 (335)
+.+.++.++..|.+.+......+++|+.....+..+|...
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~~ 111 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIADK 111 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhhc
Confidence 4566677777777777777777777777777666666543
No 48
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=68.13 E-value=28 Score=24.28 Aligned_cols=28 Identities=7% Similarity=0.114 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 175 NANALKAQLDQQKNVVNNLVSNTRLLES 202 (335)
Q Consensus 175 q~~~le~qle~~~~~v~~Lk~~l~~Le~ 202 (335)
++..|..+++++...|++|..++..++.
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~al~~ 32 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANAARS 32 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444
No 49
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=67.95 E-value=53 Score=27.48 Aligned_cols=100 Identities=14% Similarity=0.151 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 111 MNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVV 190 (335)
Q Consensus 111 me~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~le~qle~~~~~v 190 (335)
....|..+.+..-..-...+.++.+-......+..++.+...|.. .|..+-.+.......+..++..++.....+
T Consensus 22 a~~kLeeaek~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak~-----~aeeadrKyeE~~RKl~~~E~dLeraeeRa 96 (147)
T 2b9c_A 22 ALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKH-----IAEDADRKYEEVARKLVIIESDLERAEERA 96 (147)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHH-----HHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555556777888888888888888888887764 455566666666666677777777766666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 191 NNLVSNTRLLESKIQEARSKKDTLK 215 (335)
Q Consensus 191 ~~Lk~~l~~Le~ki~e~k~kr~~Lk 215 (335)
+.....+..|+..|..+-+.+..|-
T Consensus 97 e~aE~k~~eLEeeL~~~~~nlKsLE 121 (147)
T 2b9c_A 97 ELSEGKCAELEEELKTVTNNLKSLE 121 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 6666666666666655544444433
No 50
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=67.92 E-value=56 Score=27.72 Aligned_cols=15 Identities=20% Similarity=0.326 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q 019853 104 LEQAVLEMNDDLVKM 118 (335)
Q Consensus 104 LdQ~Ireme~~L~ka 118 (335)
.+..|.++++.|..+
T Consensus 40 aE~k~~eLEeeL~~v 54 (155)
T 2efr_A 40 SEGKSAELEEELKTV 54 (155)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 51
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=67.85 E-value=51 Score=27.27 Aligned_cols=36 Identities=11% Similarity=0.132 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 173 ADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEAR 208 (335)
Q Consensus 173 e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k 208 (335)
-.++..++..++.+.+.+..|+..+..|+.++..+.
T Consensus 95 K~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 95 KHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444444433
No 52
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=66.74 E-value=29 Score=24.04 Aligned_cols=42 Identities=19% Similarity=0.281 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 173 ADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 214 (335)
Q Consensus 173 e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~L 214 (335)
+.....++.++..+...-.+|...+.....+|..++.+.+.|
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445556667777777777777777777777777776666544
No 53
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=64.92 E-value=24 Score=34.19 Aligned_cols=32 Identities=22% Similarity=0.466 Sum_probs=15.7
Q ss_pred cccCchHHHHHHHHHHHHHHHhhccCCHHHHHH
Q 019853 73 NTRMNLFDRLARVVKSYANAILSSFEDPEKILE 105 (335)
Q Consensus 73 ~~~Msif~Rl~~lira~in~~ldk~EDPe~~Ld 105 (335)
++.|+||.++..+ ...+.++-..+.||.-.-|
T Consensus 10 ~~~~~~~~~l~~~-~~r~~el~~~l~~p~~~~d 41 (371)
T 1zbt_A 10 HHHMNIYDQLQAV-EDRYEELGELLSDPDVVSD 41 (371)
T ss_dssp -CCCCHHHHHHHH-HHHHHHC------------
T ss_pred hhhhhHHhhHHHH-HHHHHHHHHHhcCCcchhC
Confidence 5789999999865 4677888888888865444
No 54
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=63.38 E-value=44 Score=24.88 Aligned_cols=31 Identities=13% Similarity=0.177 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 182 QLDQQKNVVNNLVSNTRLLESKIQEARSKKD 212 (335)
Q Consensus 182 qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~ 212 (335)
.+........++...+..|..||..+...++
T Consensus 28 ~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld 58 (81)
T 1ic2_A 28 DKKAAEERSKQLEDELVALQKKLKGTEDELD 58 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333334444444444444333
No 55
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=63.12 E-value=47 Score=25.19 Aligned_cols=80 Identities=18% Similarity=0.215 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 117 KMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSN 196 (335)
Q Consensus 117 kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~le~qle~~~~~v~~Lk~~ 196 (335)
.+|..+-.+....-++.-+++.++..+++|..+-+. -+..+...|..+..++..++ .+.-.
T Consensus 4 eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~------------E~~~R~~~E~d~~~LrkdvD-------~a~l~ 64 (86)
T 3swk_A 4 ELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQE------------EMLQREEAENTLQSFRQDVD-------NASLA 64 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHTTHH-------HHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHhhHH-------HHHHH
Confidence 344444455555666666777777777766655543 12233444555555555544 44444
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 019853 197 TRLLESKIQEARSKKDTLK 215 (335)
Q Consensus 197 l~~Le~ki~e~k~kr~~Lk 215 (335)
-..|+.+++.++.++.-|+
T Consensus 65 r~dLE~kvesL~eEl~fLk 83 (86)
T 3swk_A 65 RLDLERKVESLQEEIAFLK 83 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4455556666655555443
No 56
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=63.07 E-value=14 Score=27.34 Aligned_cols=35 Identities=17% Similarity=0.192 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 171 SYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQ 205 (335)
Q Consensus 171 ~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~ 205 (335)
+++.++..++.....+......|+..+..|..++.
T Consensus 33 ~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 33 ALETQVVTLKELHSSTTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444433
No 57
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=62.76 E-value=48 Score=25.15 Aligned_cols=35 Identities=11% Similarity=0.262 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 177 NALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKK 211 (335)
Q Consensus 177 ~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr 211 (335)
-.+..+++++...+..|+..++.+..+|++++.+.
T Consensus 23 ~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQ 57 (83)
T 2xdj_A 23 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQ 57 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555554433
No 58
>3hfe_A Potassium voltage-gated channel subfamily KQT MEM; trimer, atrial fibrillation, cell membrane, cytoplasmic VESI deafness, disease mutation; 1.70A {Homo sapiens} PDB: 3hfc_A
Probab=62.14 E-value=11 Score=23.53 Aligned_cols=25 Identities=12% Similarity=0.327 Sum_probs=20.5
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHh
Q 019853 236 TSSALSAFEKMEEKVLTMESQADSL 260 (335)
Q Consensus 236 ~~~a~~~feRmEeki~~~EA~AeA~ 260 (335)
..+..+.|.|+|+|+..|.-..+.+
T Consensus 5 ~nTIGaRLnRvE~k~t~MD~kL~~i 29 (31)
T 3hfe_A 5 SNTIGARLNRVEDKVTQLDQRLALI 29 (31)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567889999999999998777654
No 59
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=61.43 E-value=24 Score=26.47 Aligned_cols=48 Identities=6% Similarity=-0.004 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 168 RRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (335)
Q Consensus 168 rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~Lk 215 (335)
|...+|.++.-.+..++++...|..-...+..|+.++..+..+...+.
T Consensus 15 Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 15 RLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 555666666666666666666666666666666666666666555544
No 60
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=60.37 E-value=53 Score=24.89 Aligned_cols=35 Identities=23% Similarity=0.286 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 183 LDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 217 (335)
Q Consensus 183 le~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr 217 (335)
+-++..+++.|+..+..|...+++...+.+.++.+
T Consensus 22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~r 56 (83)
T 2xdj_A 22 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVER 56 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555554443
No 61
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=59.46 E-value=28 Score=33.05 Aligned_cols=47 Identities=6% Similarity=0.065 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 170 KSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKA 216 (335)
Q Consensus 170 ~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkA 216 (335)
..+.+++..++..+..+...+..|+..+..++.+|.+++.+...|..
T Consensus 8 ~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~ 54 (323)
T 1lwu_C 8 QKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQ 54 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555556666666666666666666666666666666555543
No 62
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=57.75 E-value=84 Score=30.68 Aligned_cols=44 Identities=14% Similarity=0.133 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 165 ALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEAR 208 (335)
Q Consensus 165 AL~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k 208 (335)
.+.++..++..+...+.++..++..+..+...|..|+.+|.++.
T Consensus 89 ml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~ 132 (409)
T 1m1j_C 89 IIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLE 132 (409)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444443
No 63
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=57.55 E-value=80 Score=26.04 Aligned_cols=18 Identities=11% Similarity=0.220 Sum_probs=12.2
Q ss_pred chHHHHHHHHHHHHHHHh
Q 019853 77 NLFDRLARVVKSYANAIL 94 (335)
Q Consensus 77 sif~Rl~~lira~in~~l 94 (335)
.-+.++..+|-..++++-
T Consensus 28 e~L~~vA~~vd~km~ei~ 45 (138)
T 3hnw_A 28 EYLQRVASYINNKITEFN 45 (138)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 466777777766666665
No 64
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=53.64 E-value=27 Score=24.29 Aligned_cols=27 Identities=19% Similarity=0.188 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 190 VNNLVSNTRLLESKIQEARSKKDTLKA 216 (335)
Q Consensus 190 v~~Lk~~l~~Le~ki~e~k~kr~~LkA 216 (335)
++.|+.....|+.|+.+++.+.+.+++
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 65
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=52.83 E-value=73 Score=24.16 Aligned_cols=42 Identities=14% Similarity=0.147 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 173 ADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 214 (335)
Q Consensus 173 e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~L 214 (335)
.-.+..|+..-..+......++.....|..+++.++.++..+
T Consensus 26 qmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~w 67 (81)
T 2jee_A 26 QMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGW 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 333334444444444444443333333444444444443333
No 66
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=52.74 E-value=87 Score=24.99 Aligned_cols=36 Identities=14% Similarity=0.174 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 173 ADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEAR 208 (335)
Q Consensus 173 e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k 208 (335)
+..+..++..++.....+..++.++..+...|+++.
T Consensus 94 ~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~ 129 (133)
T 1fxk_C 94 KSQKNELESTLQKMGENLRAITDIMMKLSPQAEELL 129 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555555555555555555555555555543
No 67
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=52.71 E-value=96 Score=30.81 Aligned_cols=22 Identities=14% Similarity=0.203 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHHHHHhhccCC
Q 019853 78 LFDRLARVVKSYANAILSSFED 99 (335)
Q Consensus 78 if~Rl~~lira~in~~ldk~ED 99 (335)
++.+-.+=|+-.|+++=+.+.|
T Consensus 55 lL~kqerdv~~rI~kLkn~L~~ 76 (491)
T 1m1j_A 55 IIDDTDQNYSQRIDNIRQQLAD 76 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHH
Confidence 5666666666666665555443
No 68
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=52.01 E-value=52 Score=24.46 Aligned_cols=30 Identities=20% Similarity=0.248 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 183 LDQQKNVVNNLVSNTRLLESKIQEARSKKD 212 (335)
Q Consensus 183 le~~~~~v~~Lk~~l~~Le~ki~e~k~kr~ 212 (335)
+.+....+..+...|...+..|.+++.+.+
T Consensus 35 Lr~kd~~I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 35 LRQRDALIDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444
No 69
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=50.31 E-value=36 Score=31.15 Aligned_cols=20 Identities=25% Similarity=0.453 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019853 105 EQAVLEMNDDLVKMRQATAQ 124 (335)
Q Consensus 105 dQ~Ireme~~L~kar~~lA~ 124 (335)
+..+.+++.++..++..+..
T Consensus 68 ~~~~~~~~a~l~~~~a~l~~ 87 (341)
T 3fpp_A 68 ENQIKEVEATLMELRAQRQQ 87 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433
No 70
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=50.29 E-value=88 Score=24.36 Aligned_cols=31 Identities=23% Similarity=0.283 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 179 LKAQLDQQKNVVNNLVSNTRLLESKIQEARS 209 (335)
Q Consensus 179 le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~ 209 (335)
++.++......++.|+.++.+++.-+.++..
T Consensus 60 ~~~~L~e~~~kid~L~~el~K~q~~L~e~e~ 90 (98)
T 2ke4_A 60 LEPQIAETLSNIERLKLEVQKYEAWLAEAES 90 (98)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3667777777777777777777777777643
No 71
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=49.81 E-value=23 Score=32.91 Aligned_cols=16 Identities=6% Similarity=0.036 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 019853 107 AVLEMNDDLVKMRQAT 122 (335)
Q Consensus 107 ~Ireme~~L~kar~~l 122 (335)
.+...+.+|..++..+
T Consensus 71 ~l~~~~a~l~~~~a~l 86 (369)
T 4dk0_A 71 TLNTRKAALASYQAQL 86 (369)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444333
No 72
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=48.54 E-value=70 Score=27.67 Aligned_cols=50 Identities=12% Similarity=0.159 Sum_probs=38.4
Q ss_pred hhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 94 LSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQAS 143 (335)
Q Consensus 94 ldk~EDPe~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~ 143 (335)
|..+++|..++.+.|...+..+.+.+..+-.+...-...+.++..+....
T Consensus 116 Lk~a~~paE~ireli~~AertV~kLqkeiD~LEDeL~~eKek~k~i~~eL 165 (175)
T 3mud_A 116 LEKVENPAEVIRELICYCLDTTAKNEKSIDDLEEKVAHAKEENLNMHQML 165 (175)
T ss_dssp CEECSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999888888887777666666666665555544
No 73
>1y4c_A Maltose binding protein fused with designed helical protein; de novo designed helical protein, maltose binding protein fusion, de novo protein; HET: GLC; 1.90A {Escherichia coli}
Probab=48.24 E-value=1.6e+02 Score=28.69 Aligned_cols=97 Identities=23% Similarity=0.320 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH-
Q 019853 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANAL- 179 (335)
Q Consensus 101 e~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~l- 179 (335)
+.+|.-.+.+.+..|.++ +.++.--.-+.++++-+++..... |..+-..-.--|-|+|-+.||+.-+.+-.++..+
T Consensus 389 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (494)
T 1y4c_A 389 EELLKIALQEAQKTLQQA-QELAKKGGGEEQLKRALKRADRNL--WAAQELAKKGGGGEELLKQALQQAQQLLRQAQELA 465 (494)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHSSCCHHHHHHHHHHHHHHH--HHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHccCcHHHHHHHHHhhhhhh--HHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHH
Q 019853 180 -----KAQLDQQKNVVNNLVSNTRLL 200 (335)
Q Consensus 180 -----e~qle~~~~~v~~Lk~~l~~L 200 (335)
++.+.+.-++..+|-.+.++|
T Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (494)
T 1y4c_A 466 KKGGGEELLKQALQQAQQLLQQAQEL 491 (494)
T ss_dssp HHCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HccChHHHHHHHHHHHHHHHHHHHHH
No 74
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=48.24 E-value=1.2e+02 Score=25.51 Aligned_cols=26 Identities=19% Similarity=0.339 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 192 NLVSNTRLLESKIQEARSKKDTLKAR 217 (335)
Q Consensus 192 ~Lk~~l~~Le~ki~e~k~kr~~LkAr 217 (335)
.|.-++..++.++..++.+-..|..|
T Consensus 107 aLqlq~n~lE~kl~kLq~EN~~LV~R 132 (152)
T 3a7p_A 107 SGTIENNVLQQKLSDLKKEHSQLVAR 132 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444
No 75
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=47.86 E-value=60 Score=30.70 Aligned_cols=22 Identities=9% Similarity=0.057 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019853 187 KNVVNNLVSNTRLLESKIQEAR 208 (335)
Q Consensus 187 ~~~v~~Lk~~l~~Le~ki~e~k 208 (335)
+..+..++..|.+|+.+|.+++
T Consensus 32 ~~~l~~~~~~i~~l~~~i~~l~ 53 (323)
T 1lwu_C 32 SEMWRVNQQFVTRLQQQLVDIR 53 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 76
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=46.80 E-value=81 Score=25.10 Aligned_cols=46 Identities=9% Similarity=0.196 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 176 ANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSA 221 (335)
Q Consensus 176 ~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~~~A 221 (335)
+..+.+++.+.+..+..|..++..|+..++.++.+|+-+-.+.+-.
T Consensus 6 ~~al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdI 51 (106)
T 4e61_A 6 LVAIQAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDI 51 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777888888888888888888888888776665554
No 77
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=45.88 E-value=2.4e+02 Score=28.17 Aligned_cols=60 Identities=17% Similarity=0.297 Sum_probs=45.3
Q ss_pred CCcHHHHHHHHHHHH------HhHHHHHHHhhcccCCChhHHHhhhcc--------CCHHHHHHHHHHHcCCCC
Q 019853 236 TSSALSAFEKMEEKV------LTMESQADSLNQLTTDDLEGKFALLET--------SSVDDDLANLKKELSGSS 295 (335)
Q Consensus 236 ~~~a~~~feRmEeki------~~~EA~AeA~~eL~~~~Le~k~a~le~--------~~vddeLa~LKa~l~~~~ 295 (335)
.++|+.+|+++..-+ ...++-+.|+..++.+++...|..+++ -.+.+.+..+++.+.-++
T Consensus 468 vDDALaSfEKyk~NlnkKfnakDR~AIvNALkSvDa~dmAkNL~kfSKaFg~tgKvIka~DV~eK~kkG~ETGN 541 (602)
T 1cii_A 468 VEEALKTYEKYRADINKKINAKDRAAIAAALESVKLSDISSNLNRFSRGLGYAGKFTSLADWITEFGKAVRTEN 541 (602)
T ss_dssp HHHHHHHHHHTHHHHTTSSCSHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCSCBCCHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhcChhhhcchhhHHHHHHHHHHcCHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhcCCC
Confidence 478899999988875 456777788887777778888877662 268899999988775543
No 78
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=44.93 E-value=1.2e+02 Score=30.17 Aligned_cols=30 Identities=7% Similarity=0.006 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 019853 129 QKRLENKCKAAEQASEDWYRKAQLALQKGE 158 (335)
Q Consensus 129 ~k~le~kl~~~~~~~~~~e~rA~~AL~~G~ 158 (335)
++.+..++++++.+......+.-.+.+.|+
T Consensus 42 ~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~ 71 (485)
T 3qne_A 42 WVKLRFDLDEHNKKLNSVQKEIGKRFKAKE 71 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 344444444444444444444444444554
No 79
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=43.34 E-value=1.2e+02 Score=23.91 Aligned_cols=31 Identities=23% Similarity=0.310 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 110 EMNDDLVKMRQATAQVLASQKRLENKCKAAE 140 (335)
Q Consensus 110 eme~~L~kar~~lA~v~A~~k~le~kl~~~~ 140 (335)
|+..+|...++.-..+....+.|+.++.++.
T Consensus 12 E~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~ 42 (107)
T 2no2_A 12 EVTKQVSMARQAQVDLEREKKELEDSLERIS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666677776666666666666666655
No 80
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=42.44 E-value=41 Score=23.34 Aligned_cols=30 Identities=20% Similarity=0.379 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 175 NANALKAQLDQQKNVVNNLVSNTRLLESKI 204 (335)
Q Consensus 175 q~~~le~qle~~~~~v~~Lk~~l~~Le~ki 204 (335)
.++.|+.+.+.++..+..|...+.++++++
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444443
No 81
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=42.24 E-value=65 Score=24.90 Aligned_cols=13 Identities=23% Similarity=0.238 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 019853 188 NVVNNLVSNTRLL 200 (335)
Q Consensus 188 ~~v~~Lk~~l~~L 200 (335)
.+++.|+..+..+
T Consensus 62 ~e~~~L~~e~~~~ 74 (90)
T 2wt7_B 62 QQVEQLKQEVSRL 74 (90)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 82
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=41.61 E-value=87 Score=21.83 Aligned_cols=26 Identities=15% Similarity=0.304 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 180 KAQLDQQKNVVNNLVSNTRLLESKIQ 205 (335)
Q Consensus 180 e~qle~~~~~v~~Lk~~l~~Le~ki~ 205 (335)
+..++.++..-..|...+..|+..+.
T Consensus 28 e~~~~~L~~~n~~L~~~i~~L~~e~~ 53 (61)
T 1t2k_D 28 EKKAEDLSSLNGQLQSEVTLLRNEVA 53 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 83
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=40.82 E-value=78 Score=21.05 Aligned_cols=27 Identities=15% Similarity=0.352 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 189 VVNNLVSNTRLLESKIQEARSKKDTLK 215 (335)
Q Consensus 189 ~v~~Lk~~l~~Le~ki~e~k~kr~~Lk 215 (335)
.+++....+.+.+.+|.+++.++..|.
T Consensus 10 kI~kVdrEI~Kte~kI~~lqkKlkeLe 36 (42)
T 2l5g_B 10 NMDRVDREITMVEQQISKLKKKQQQLE 36 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555554
No 84
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=40.62 E-value=34 Score=31.34 Aligned_cols=41 Identities=17% Similarity=0.262 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 175 NANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (335)
Q Consensus 175 q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~Lk 215 (335)
.+..++.+++.+..+...|...+..++.+|..++.+.+.|+
T Consensus 55 ~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 55 DIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45556666666666666677777777766666666666553
No 85
>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae}
Probab=40.60 E-value=1.2e+02 Score=27.63 Aligned_cols=54 Identities=24% Similarity=0.305 Sum_probs=32.0
Q ss_pred HhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 154 LQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEA 207 (335)
Q Consensus 154 L~~G~EdLAreAL~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~ 207 (335)
+=..++|+|.-.|.++.......++++-.++.+-++++.+...+..|...|...
T Consensus 193 lLddDeDm~~myLT~k~~~~~d~eElEmLLE~Y~~q~d~~~~~~~~L~~~I~~T 246 (261)
T 3rkg_A 193 LLENDDDLANMYLTVKKSPKDNFSDLEMLIETYYTQCDEYVQQSESLIQDIKST 246 (261)
T ss_dssp HHTCHHHHHHTCCSSCCCTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCHHHHHHhhccCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455889999999987654444444555555555555555555555554444444
No 86
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=40.55 E-value=1.2e+02 Score=23.12 Aligned_cols=26 Identities=8% Similarity=0.225 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 183 LDQQKNVVNNLVSNTRLLESKIQEAR 208 (335)
Q Consensus 183 le~~~~~v~~Lk~~l~~Le~ki~e~k 208 (335)
++.....+..+...+...+.+|.+++
T Consensus 53 l~~h~~ei~~le~~i~rhk~~i~~l~ 78 (84)
T 1gmj_A 53 ISHHAKEIERLQKEIERHKQSIKKLK 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444444444444444444443
No 87
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=40.15 E-value=1.8e+02 Score=28.58 Aligned_cols=32 Identities=9% Similarity=0.021 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 019853 127 ASQKRLENKCKAAEQASEDWYRKAQLALQKGE 158 (335)
Q Consensus 127 A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~ 158 (335)
...+.+..++++++.+.....++...+...|.
T Consensus 38 ~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~ 69 (455)
T 2dq0_A 38 TEWRTKLKEINRLRHERNKIAVEIGKRRKKGE 69 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 34455555555666666655555555445553
No 88
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=39.99 E-value=77 Score=23.51 Aligned_cols=27 Identities=19% Similarity=0.271 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 173 ADNANALKAQLDQQKNVVNNLVSNTRL 199 (335)
Q Consensus 173 e~q~~~le~qle~~~~~v~~Lk~~l~~ 199 (335)
+..+..++..+++....+..|+..+.+
T Consensus 39 d~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 39 DALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444433
No 89
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=39.96 E-value=84 Score=27.38 Aligned_cols=51 Identities=14% Similarity=0.257 Sum_probs=41.6
Q ss_pred hhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 94 LSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASE 144 (335)
Q Consensus 94 ldk~EDPe~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~ 144 (335)
|+++.||..++..+|.=+-+.+..++..+.+...+-.+|.++.++..++.+
T Consensus 133 L~~v~~p~e~i~elid~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~l~qlE 183 (184)
T 3w03_C 133 LEKVENPAEVIRELICYCLDTIAENQAKNEHLQKENERLLRDWNDVQGRFE 183 (184)
T ss_dssp CEECSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeECCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 567789999999999999899988888888888777778777777666554
No 90
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=39.90 E-value=37 Score=31.08 Aligned_cols=26 Identities=8% Similarity=0.250 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 110 EMNDDLVKMRQATAQVLASQKRLENK 135 (335)
Q Consensus 110 eme~~L~kar~~lA~v~A~~k~le~k 135 (335)
+++.++.+++..+..+.+.....+.+
T Consensus 66 ~~~~~~~~~~a~l~~~~a~l~~a~~~ 91 (341)
T 3fpp_A 66 QAENQIKEVEATLMELRAQRQQAEAE 91 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666665555544443333333
No 91
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=39.41 E-value=18 Score=34.27 Aligned_cols=42 Identities=17% Similarity=0.133 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 166 LKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 214 (335)
Q Consensus 166 L~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~L 214 (335)
|.+...+|..+..++.++ ..|+..+..++.+|.+++.+...|
T Consensus 3 ~~~~~~lE~~Il~~~~~i-------~~L~~~l~~~~~ki~~L~~~i~~l 44 (319)
T 1fzc_C 3 LEEIMKYEASILTHDSSI-------RYLQEIYNSNNQKIVNLKEKVAQL 44 (319)
T ss_dssp -------CTTTTTHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhChHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444 444444444455555544444444
No 92
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=39.29 E-value=61 Score=23.78 Aligned_cols=41 Identities=17% Similarity=0.223 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 173 ADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDT 213 (335)
Q Consensus 173 e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~ 213 (335)
+..+..|+.++..++.....+......|...|..+..+...
T Consensus 28 ~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRI 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666655555555555555566666555555444
No 93
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=39.13 E-value=78 Score=20.52 Aligned_cols=27 Identities=19% Similarity=0.172 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 189 VVNNLVSNTRLLESKIQEARSKKDTLK 215 (335)
Q Consensus 189 ~v~~Lk~~l~~Le~ki~e~k~kr~~Lk 215 (335)
.+...+.++.+|+.+++.++.++-.|-
T Consensus 9 TLeEtkeQi~~l~~kl~~LkeEKHQLF 35 (38)
T 2l5g_A 9 SLEETKEQILKLEEKLLALQEEKHQLF 35 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667778888888888888777653
No 94
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=38.66 E-value=1.3e+02 Score=23.09 Aligned_cols=35 Identities=14% Similarity=0.172 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 178 ALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKD 212 (335)
Q Consensus 178 ~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~ 212 (335)
.|...+-.+..+...+...+..++.++.-..++++
T Consensus 57 ~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLd 91 (96)
T 3q8t_A 57 QYQREYSEFKRQQLELDDELKSVENQMRYAQMQLD 91 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444433
No 95
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=38.29 E-value=3.1e+02 Score=27.17 Aligned_cols=47 Identities=13% Similarity=0.129 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 103 ILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRK 149 (335)
Q Consensus 103 ~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~r 149 (335)
.|+..+.++......+...+..+....+..+.++......+.++...
T Consensus 104 eLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~ 150 (464)
T 1m1j_B 104 DLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTE 150 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHHH
Confidence 34555555555555555555555555555555555555555555433
No 96
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=36.40 E-value=1e+02 Score=21.78 Aligned_cols=24 Identities=13% Similarity=0.185 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 191 NNLVSNTRLLESKIQEARSKKDTL 214 (335)
Q Consensus 191 ~~Lk~~l~~Le~ki~e~k~kr~~L 214 (335)
..|+..-..|+.+|..++.+...|
T Consensus 33 ~~L~~~N~~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 33 KELEKKNEALKERADSLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334443333333
No 97
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=36.35 E-value=53 Score=33.33 Aligned_cols=16 Identities=6% Similarity=0.054 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHHHHH
Q 019853 78 LFDRLARVVKSYANAI 93 (335)
Q Consensus 78 if~Rl~~lira~in~~ 93 (335)
+-+.||.++.++..=.
T Consensus 276 ~ak~i~~lc~~~H~ff 291 (575)
T 2i1j_A 276 VNKRILALCMGNHELY 291 (575)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4577888888875533
No 98
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=36.27 E-value=1.2e+02 Score=21.88 Aligned_cols=22 Identities=5% Similarity=0.061 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019853 190 VNNLVSNTRLLESKIQEARSKK 211 (335)
Q Consensus 190 v~~Lk~~l~~Le~ki~e~k~kr 211 (335)
+...+..+.+|...|+.++.++
T Consensus 51 l~~~k~Ei~elrr~iq~L~~el 72 (77)
T 3trt_A 51 LRQAKQESTEYRRQVQSLTMEV 72 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 99
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=36.03 E-value=2.2e+02 Score=24.79 Aligned_cols=49 Identities=10% Similarity=0.251 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Q 019853 132 LENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALK 180 (335)
Q Consensus 132 le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~le 180 (335)
+..-..+++..++.+......|+..|+-+-|...+.+..-+..-...++
T Consensus 153 l~~l~~~~~~~~~~~~~~l~~~~~~~d~~~A~~~v~kL~y~~kl~~~i~ 201 (207)
T 3bvo_A 153 MKEIESIVKAKQKEFTDNVSSAFEQDDFEEAKEILTKMRYFSNIEEKIK 201 (207)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445566666677777788888998888888777766654444333
No 100
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=35.39 E-value=2e+02 Score=24.23 Aligned_cols=18 Identities=22% Similarity=0.224 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019853 110 EMNDDLVKMRQATAQVLA 127 (335)
Q Consensus 110 eme~~L~kar~~lA~v~A 127 (335)
++++.|..+|+.+.....
T Consensus 17 ~LeD~L~~~R~el~~~~~ 34 (154)
T 2ocy_A 17 HLEEQLNKSLKTIASQKA 34 (154)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 455666666666654433
No 101
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=34.95 E-value=2.1e+02 Score=24.33 Aligned_cols=71 Identities=17% Similarity=0.193 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Q 019853 99 DPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANA 178 (335)
Q Consensus 99 DPe~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~ 178 (335)
||.-+.++. +..+.|..+... ..+..-..+....+..+......++..++-+-|+..+.+..-+..-...
T Consensus 100 d~~fLme~m--e~rE~leea~~~--------~~l~~l~~~~~~~~~~~~~~l~~~~~~~d~~~A~~~~~kL~y~~kl~~~ 169 (181)
T 3uo3_A 100 DPQLLLKVL--DIHDELSQMDDE--------AGVKLLEKQNKERIQDIEAQLGQCYNDKDYAAAVKLTVELKYWYNLAKA 169 (181)
T ss_dssp CHHHHHHHH--HHHHHHHHCCSH--------HHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHH--HHHHHHHhccCH--------HHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 555444432 445555554321 1233444566777888888888899999988888887776666554443
Q ss_pred H
Q 019853 179 L 179 (335)
Q Consensus 179 l 179 (335)
+
T Consensus 170 i 170 (181)
T 3uo3_A 170 F 170 (181)
T ss_dssp H
T ss_pred H
Confidence 3
No 102
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=34.88 E-value=46 Score=30.74 Aligned_cols=26 Identities=15% Similarity=-0.000 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 110 EMNDDLVKMRQATAQVLASQKRLENK 135 (335)
Q Consensus 110 eme~~L~kar~~lA~v~A~~k~le~k 135 (335)
+.+.++.+++..++.+.+.....+.+
T Consensus 67 ~~~~~l~~~~a~l~~~~a~l~~a~~~ 92 (369)
T 4dk0_A 67 TQINTLNTRKAALASYQAQLVARKTA 92 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666665544443333333
No 103
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=34.39 E-value=1e+02 Score=25.10 Aligned_cols=51 Identities=12% Similarity=0.016 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 132 LENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQ 182 (335)
Q Consensus 132 le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~le~q 182 (335)
+++++..+....+....+--.|...|+.++.-+...++..+..+++.++..
T Consensus 8 ~K~Eiq~L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~ 58 (123)
T 2lf0_A 8 EKNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLREV 58 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777777777777888888777666666555555555555444
No 104
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=34.17 E-value=1.8e+02 Score=23.37 Aligned_cols=48 Identities=8% Similarity=0.116 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYR 148 (335)
Q Consensus 101 e~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~ 148 (335)
..+|++.-++++.--.+...-....-..-.+++.++.+++.+.+....
T Consensus 14 D~~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~ 61 (120)
T 3i00_A 14 DHLIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQH 61 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345554444444333333333333333334455555555555544443
No 105
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=33.94 E-value=1.2e+02 Score=21.36 Aligned_cols=34 Identities=18% Similarity=0.193 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 176 ANALKAQLDQQKNVVNNLVSNTRLLESKIQEARS 209 (335)
Q Consensus 176 ~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~ 209 (335)
...++...+.++..-..|+..+..|+..+..++.
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555543
No 106
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=33.57 E-value=1.8e+02 Score=23.07 Aligned_cols=51 Identities=20% Similarity=0.253 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHH
Q 019853 166 LKRRKSYADNANALKAQLDQQKNVVNNLVSNTR-------------------LLESKIQEARSKKDTLKA 216 (335)
Q Consensus 166 L~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~-------------------~Le~ki~e~k~kr~~LkA 216 (335)
....+.+++.+...+.||..+.+.+......+. .++.||.++++.+....+
T Consensus 34 M~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd~va 103 (107)
T 2k48_A 34 MSTLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLADLVA 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 107
>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} PDB: 1owa_A
Probab=33.56 E-value=2e+02 Score=23.55 Aligned_cols=117 Identities=6% Similarity=0.013 Sum_probs=67.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Q 019853 99 DPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANA 178 (335)
Q Consensus 99 DPe~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~ 178 (335)
+....|.+....+.+...+-+..|-... .-.++.+...+....+.+-..-+... .-++-.-+...+.+-+.++..+..
T Consensus 29 ~r~~~l~~rw~~L~~~a~~R~~~Le~s~-~lq~F~~d~~el~~Wi~ek~~~a~~~-~~~d~~~v~~ll~kH~afe~El~a 106 (161)
T 3lbx_A 29 ERRQEVLTRYQSFKERVAERGQKLEDSY-HLQVFKRDADDLGKWIMEKVNILTDK-SYEDPTNIQGKYQKHQSLEAEVQT 106 (161)
T ss_dssp GHHHHGGGHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTT-SCCSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhccCC-CcCCHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555555554 33456666666666555544322211 125555667777888888888888
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 019853 179 LKAQLDQQKNVVNNLVS----NTRLLESKIQEARSKKDTLKAR 217 (335)
Q Consensus 179 le~qle~~~~~v~~Lk~----~l~~Le~ki~e~k~kr~~LkAr 217 (335)
.+..++.+...-.+|.. .-..++.++.++..+=+.|...
T Consensus 107 ~~~~~~~l~~~g~~Li~~~~~~~~~I~~rl~eL~~~W~~L~~~ 149 (161)
T 3lbx_A 107 KSRLMSELEKTREERFTMGHSAHEETKAHIEELRHLWDLLLEL 149 (161)
T ss_dssp HHHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 88888877777666632 1334556666666666655543
No 108
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=32.75 E-value=1.7e+02 Score=22.45 Aligned_cols=35 Identities=17% Similarity=0.194 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 109 LEMNDDLVKMRQATAQVLASQKRLENKCKAAEQAS 143 (335)
Q Consensus 109 reme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~ 143 (335)
.++-..+...+..+..+......++.++.++..-.
T Consensus 9 Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~ 43 (117)
T 2zqm_A 9 QAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKAL 43 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555554333
No 109
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=32.43 E-value=1.1e+02 Score=20.19 Aligned_cols=25 Identities=32% Similarity=0.391 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 190 VNNLVSNTRLLESKIQEARSKKDTL 214 (335)
Q Consensus 190 v~~Lk~~l~~Le~ki~e~k~kr~~L 214 (335)
...|+..++.|+.++..++.+...|
T Consensus 22 laaleselqalekklaalksklqal 46 (48)
T 1g6u_A 22 LAALESELQALEKKLAALKSKLQAL 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455566666666666666665544
No 110
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=32.39 E-value=1.1e+02 Score=24.36 Aligned_cols=41 Identities=20% Similarity=0.203 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 176 ANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKA 216 (335)
Q Consensus 176 ~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkA 216 (335)
+..+..++.+++..+..+..++..++..+.+++.-++.+..
T Consensus 3 ~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~ 43 (133)
T 1fxk_C 3 LAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSD 43 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666666667777777777777777777666666553
No 111
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=31.64 E-value=3e+02 Score=27.35 Aligned_cols=20 Identities=15% Similarity=0.107 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019853 192 NLVSNTRLLESKIQEARSKK 211 (335)
Q Consensus 192 ~Lk~~l~~Le~ki~e~k~kr 211 (335)
.|++.+..++.++.+++.++
T Consensus 127 ~l~~~i~~l~~~~~~~~~~l 146 (501)
T 1wle_A 127 EIRKQLTLLYPKEAQLEEQF 146 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333434444444433333
No 112
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=31.45 E-value=1.1e+02 Score=23.50 Aligned_cols=37 Identities=19% Similarity=0.264 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 169 RKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQ 205 (335)
Q Consensus 169 k~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~ 205 (335)
+..+|.....+..+++.+......+...+..++.+++
T Consensus 50 ~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~ 86 (90)
T 2wt7_B 50 KHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSE 86 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445455555555555555555555555544444
No 113
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=31.08 E-value=1.7e+02 Score=22.05 Aligned_cols=37 Identities=11% Similarity=0.212 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 109 LEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASED 145 (335)
Q Consensus 109 reme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~ 145 (335)
.++-..+...+..+..+......++.++.++..-...
T Consensus 4 Q~~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~E 40 (107)
T 1fxk_A 4 QHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEE 40 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555666666666666666665555544433
No 114
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=31.04 E-value=1.1e+02 Score=22.99 Aligned_cols=34 Identities=18% Similarity=0.363 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 182 QLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (335)
Q Consensus 182 qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~Lk 215 (335)
.+...+..-..|+..++.++..+++.+.+++.++
T Consensus 14 klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~ 47 (79)
T 3cvf_A 14 KVQDLETRNAELEHQLRAMERSLEEARAERERAR 47 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444455555555555555555544443
No 115
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=30.88 E-value=1.9e+02 Score=22.49 Aligned_cols=44 Identities=14% Similarity=0.302 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 167 KRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSK 210 (335)
Q Consensus 167 ~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~k 210 (335)
.+..-+..|+..|+.....-...-+++......|..++..++.+
T Consensus 40 E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q 83 (94)
T 3jsv_C 40 ETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQRE 83 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 44444445555554444444444444444444444444444433
No 116
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=30.28 E-value=1.2e+02 Score=26.71 Aligned_cols=6 Identities=0% Similarity=0.191 Sum_probs=2.8
Q ss_pred ccCCHH
Q 019853 96 SFEDPE 101 (335)
Q Consensus 96 k~EDPe 101 (335)
.+++|.
T Consensus 52 ~ld~~~ 57 (277)
T 2f1m_A 52 QIDPAT 57 (277)
T ss_dssp EECCHH
T ss_pred EECcHH
Confidence 444554
No 117
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=29.53 E-value=33 Score=32.49 Aligned_cols=28 Identities=18% Similarity=0.119 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 187 KNVVNNLVSNTRLLESKIQEARSKKDTL 214 (335)
Q Consensus 187 ~~~v~~Lk~~l~~Le~ki~e~k~kr~~L 214 (335)
+..|..+..++..|+..|..++.++..|
T Consensus 10 E~~Il~~~~~i~~L~~~l~~~~~ki~~L 37 (319)
T 1fzc_C 10 EASILTHDSSIRYLQEIYNSNNQKIVNL 37 (319)
T ss_dssp CTTTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhChHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444433
No 118
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=29.05 E-value=1.4e+02 Score=20.40 Aligned_cols=36 Identities=17% Similarity=0.036 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 173 ADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEAR 208 (335)
Q Consensus 173 e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k 208 (335)
+.++..|+..++++...|..|+..-.+++..|..++
T Consensus 3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~ 38 (48)
T 3vmx_A 3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLN 38 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 567777777777777777777777777766665543
No 119
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=28.91 E-value=2.2e+02 Score=22.75 Aligned_cols=20 Identities=10% Similarity=0.021 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 019853 136 CKAAEQASEDWYRKAQLALQ 155 (335)
Q Consensus 136 l~~~~~~~~~~e~rA~~AL~ 155 (335)
+++++.++...+.+-..|-+
T Consensus 24 ieeLq~Ei~~~E~QL~~ArQ 43 (113)
T 4fi5_A 24 MEELQREINAHEGQLVIARQ 43 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555666666655555443
No 120
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=28.65 E-value=2.8e+02 Score=23.71 Aligned_cols=18 Identities=11% Similarity=0.196 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019853 196 NTRLLESKIQEARSKKDT 213 (335)
Q Consensus 196 ~l~~Le~ki~e~k~kr~~ 213 (335)
.++++..+|.+++.++..
T Consensus 114 kI~aL~~Ei~~Lr~qL~~ 131 (175)
T 3lay_A 114 KINAVAKEMESLGQKLDE 131 (175)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444443
No 121
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=28.61 E-value=2.5e+02 Score=23.18 Aligned_cols=24 Identities=17% Similarity=0.178 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 174 DNANALKAQLDQQKNVVNNLVSNT 197 (335)
Q Consensus 174 ~q~~~le~qle~~~~~v~~Lk~~l 197 (335)
.....|+.++......++.+..++
T Consensus 103 ~r~~~L~~ql~e~e~ll~~lq~QL 126 (135)
T 2e7s_A 103 ILNKRLTEQLREKDMLLDTLTLQL 126 (135)
T ss_dssp HHHHHHHHTTTHHHHCC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 122
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=28.41 E-value=3.7e+02 Score=25.10 Aligned_cols=112 Identities=13% Similarity=0.179 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhc--CCCCCcHHHHHHHHHHHHHhHHHHHH
Q 019853 182 QLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSA-KTATKVSEMLG--NVNTSSALSAFEKMEEKVLTMESQAD 258 (335)
Q Consensus 182 qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~~~A-kAq~~v~~~~~--~~~~~~a~~~feRmEeki~~~EA~Ae 258 (335)
+++.+...+..+.+.-..++.+.++++.+...|.++.-.= +++..++.... |....+..+-++-|.......--...
T Consensus 4 ~~~~l~~~~~~~~e~r~~lr~~~eql~~~i~~L~~~ap~W~~aq~al~rL~eq~g~~~~ds~~v~~~mq~~Le~Ere~~~ 83 (302)
T 3ibp_A 4 MIASLSDSVSNAREERMALRQEQEQLQSRIQSLMQRAPVWLAAQNSLNQLSEQCGEEFTSSQDVTEYLQQLLEREREAIV 83 (302)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHH
Q ss_pred Hhhccc--CCChhHHHhhhc--cCCHHHHHHHHHHHcCC
Q 019853 259 SLNQLT--TDDLEGKFALLE--TSSVDDDLANLKKELSG 293 (335)
Q Consensus 259 A~~eL~--~~~Le~k~a~le--~~~vddeLa~LKa~l~~ 293 (335)
..+++. ...|+.++..|. +..-+..|..|...+|+
T Consensus 84 ~Rd~~a~~k~~Le~~ierLs~pgg~~dprL~~LAe~~GG 122 (302)
T 3ibp_A 84 ERDEVGARKNAVDEEIERLSQPGGSEDQRLNALAERFGG 122 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHhCC
No 123
>1hji_B NUN-protein; bacteriophage HK022, termination, peptide-RNA-complex, peptide-RNA-recognition; NMR {Bacteriophage HK022} SCOP: j.9.5.1
Probab=27.70 E-value=61 Score=18.85 Aligned_cols=18 Identities=22% Similarity=0.564 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 019853 140 EQASEDWYRKAQLALQKG 157 (335)
Q Consensus 140 ~~~~~~~e~rA~~AL~~G 157 (335)
...+..|+.+.--||+.|
T Consensus 9 rrriarwekriayalkng 26 (26)
T 1hji_B 9 RRRIARWEKRIAYALKNG 26 (26)
T ss_dssp HHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 467889999999998876
No 124
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=27.55 E-value=2.1e+02 Score=21.95 Aligned_cols=33 Identities=12% Similarity=0.158 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 105 EQAVLEMNDDLVKMRQATAQVLASQKRLENKCK 137 (335)
Q Consensus 105 dQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~ 137 (335)
+..++++...-..+.+.|-.+......+...+.
T Consensus 10 ~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~ 42 (96)
T 3q8t_A 10 QRELKELALEEERLIQELEDVEKNRKVVAENLE 42 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 333333333333333333333333333333333
No 125
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=27.23 E-value=2.4e+02 Score=22.54 Aligned_cols=94 Identities=11% Similarity=0.089 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 109 LEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKN 188 (335)
Q Consensus 109 reme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~le~qle~~~~ 188 (335)
...+....++......+......+..++........+.+.+...- .+-..+| =.....+...+...+.....+..
T Consensus 30 ~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L-~~~k~eL----e~~l~el~~rleeeee~~~~L~~ 104 (129)
T 2fxo_A 30 EKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQL-IKNKIQL----EAKVKEMNKRLEDEEEMNAELTA 104 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444455555555555555555555544444443321 1111111 12223334444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 019853 189 VVNNLVSNTRLLESKIQEA 207 (335)
Q Consensus 189 ~v~~Lk~~l~~Le~ki~e~ 207 (335)
.-.++...+..|+..|.+.
T Consensus 105 ~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 105 KKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444443
No 126
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=27.10 E-value=1.8e+02 Score=20.95 Aligned_cols=25 Identities=16% Similarity=0.175 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 183 LDQQKNVVNNLVSNTRLLESKIQEA 207 (335)
Q Consensus 183 le~~~~~v~~Lk~~l~~Le~ki~e~ 207 (335)
+...+..+..|+..+..|+..|+.+
T Consensus 51 l~~~k~Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 51 LRQAKQESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334444444444444444444443
No 127
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=27.07 E-value=2.5e+02 Score=22.79 Aligned_cols=41 Identities=5% Similarity=0.103 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 019853 107 AVLEMNDDLVKMRQATAQVLASQKRL---ENKCKAAEQASEDWY 147 (335)
Q Consensus 107 ~Ireme~~L~kar~~lA~v~A~~k~l---e~kl~~~~~~~~~~e 147 (335)
.+..+...+.+.+..+..+......+ +.++.++..-++.+.
T Consensus 10 ~l~ql~~~~qql~~~~~~l~~~~~~L~~a~~~~~e~~~~l~~l~ 53 (151)
T 2zdi_C 10 ELEKLAYEYQVLQAQAQILAQNLELLNLAKAEVQTVRETLENLK 53 (151)
T ss_dssp HHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555565566 666666666655543
No 128
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=27.06 E-value=2e+02 Score=21.61 Aligned_cols=31 Identities=16% Similarity=0.212 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 179 LKAQLDQQKNVVNNLVSNTRLLESKIQEARS 209 (335)
Q Consensus 179 le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~ 209 (335)
++...+.....+..|..++..++.++.+++.
T Consensus 70 L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~ 100 (107)
T 1fxk_A 70 LQEKLETLQLREKTIERQEERVMKKLQEMQV 100 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444444444444443
No 129
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=26.47 E-value=3.5e+02 Score=24.19 Aligned_cols=45 Identities=16% Similarity=0.079 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 109 LEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA 153 (335)
Q Consensus 109 reme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~A 153 (335)
.+++..+.++...+......-...+.+|...-.+++....+...+
T Consensus 139 k~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~c~e~e~a~~~~~~~ 183 (312)
T 3abh_A 139 KEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREANS 183 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345556666666666666666666777776666666665554443
No 130
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=26.16 E-value=2.1e+02 Score=27.47 Aligned_cols=43 Identities=16% Similarity=0.241 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 172 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 214 (335)
Q Consensus 172 ~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~L 214 (335)
++.++..++.+....+..+.+++..+..++.++.+....+..|
T Consensus 8 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l 50 (403)
T 4etp_A 8 LKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTL 50 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444433
No 131
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=25.97 E-value=1.7e+02 Score=20.26 Aligned_cols=44 Identities=16% Similarity=0.224 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 182 QLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKV 227 (335)
Q Consensus 182 qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~~~AkAq~~v 227 (335)
+++++...|.+|..++..|...+..++.... .+...+++|-+++
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~al~~~v~--~ak~eA~RAN~Rl 48 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANAARSDAQ--AAKDDAARANQRA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhh
Confidence 4555566666666666666665555555333 3333344444333
No 132
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=25.95 E-value=2.3e+02 Score=21.88 Aligned_cols=37 Identities=24% Similarity=0.272 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 170 KSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQE 206 (335)
Q Consensus 170 ~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e 206 (335)
.+|+.++..-=.+++.....|-.|+....+++.++++
T Consensus 39 ~eyE~ki~~Qi~Emq~Ir~tvyeLE~~h~kmKq~YEe 75 (92)
T 3vp9_A 39 KDYDFKMNQQLAEMQQIRNTVYERELTHRKMKDAYEE 75 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666666666777777777776666655543
No 133
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=25.71 E-value=3.3e+02 Score=23.58 Aligned_cols=68 Identities=6% Similarity=0.202 Sum_probs=40.6
Q ss_pred HHHHHHHHH---HHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 81 RLARVVKSY---ANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRK 149 (335)
Q Consensus 81 Rl~~lira~---in~~ldk~EDPe~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~r 149 (335)
=|.+++... +++.+.... +..-+.+.+.++...+.....-...+...+..++.++.+.......|..+
T Consensus 42 eL~~LL~~~~dlL~~~v~~l~-~~q~~~~~~e~l~s~ae~ll~l~~~Le~~r~~l~~~l~~~~~L~~~~~~k 112 (192)
T 2p22_C 42 EIIDLIQTHRHQLELYVTKFN-PLTDFAGKIHAFRDQFKQLEENFEDLHEQKDKVQALLENARILESKYVAS 112 (192)
T ss_dssp HHHHHHHHCHHHHHHHGGGGS-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhChHHHHHHHHHhch-hHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555444 555555443 33444445555555555555555667777777788888887777777444
No 134
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=25.64 E-value=1.6e+02 Score=23.87 Aligned_cols=45 Identities=24% Similarity=0.348 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLAL 154 (335)
Q Consensus 104 LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL 154 (335)
|.-.|+..++.|..+++++- ..-..+..+++..|.+|..-++.|+
T Consensus 12 L~~~i~~l~~~L~~lkqa~k------~~~~~~~~eL~~LI~KWr~asq~aa 56 (122)
T 3viq_A 12 LEKEVRNLQEQLITAETARK------VEAKNEDKDLQTLIQKWKNAAQQAA 56 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHH------HHHHCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH------HHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555432 2223344566777777777666553
No 135
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=25.56 E-value=3.9e+02 Score=24.44 Aligned_cols=21 Identities=10% Similarity=0.254 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHH
Q 019853 239 ALSAFEKMEEKVLTMESQADS 259 (335)
Q Consensus 239 a~~~feRmEeki~~~EA~AeA 259 (335)
....++.|..-+.......+.
T Consensus 270 ~~~~~~~l~~~i~~id~~~Di 290 (350)
T 3aco_A 270 YKAIYHDLEQSIRAADAVEDL 290 (350)
T ss_dssp HHHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHH
Confidence 445667777777766666554
No 136
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=25.20 E-value=1.5e+02 Score=26.68 Aligned_cols=42 Identities=12% Similarity=0.076 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 169 RKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSK 210 (335)
Q Consensus 169 k~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~k 210 (335)
..+.|+.+..++..+++..+........+..++.+++++.+.
T Consensus 8 vd~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~d~ 49 (233)
T 2yko_A 8 CDQLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIWDY 49 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445566667777777766666666666666666666665443
No 137
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=25.17 E-value=2.4e+02 Score=21.87 Aligned_cols=13 Identities=23% Similarity=0.588 Sum_probs=6.3
Q ss_pred CHHHHHHHHHHHc
Q 019853 279 SVDDDLANLKKEL 291 (335)
Q Consensus 279 ~vddeLa~LKa~l 291 (335)
.....|+.|+.+.
T Consensus 72 ~L~~ql~~lq~q~ 84 (94)
T 3jsv_C 72 YLQEQLEQLQREF 84 (94)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHH
Confidence 3445555555543
No 138
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=25.13 E-value=1.9e+02 Score=20.64 Aligned_cols=47 Identities=17% Similarity=0.210 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 169 RKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (335)
Q Consensus 169 k~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~Lk 215 (335)
..+...-+..-+.-++++-+.-..|-+.++.|+.+|..+..+-..|.
T Consensus 15 ylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 15 YLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence 33444455556666777777778888888888888888877655543
No 139
>1nov_D Nodamura virus coat proteins; insect virus, icosahedral VIRU; 3.50A {Nodamura virus}
Probab=25.13 E-value=47 Score=22.19 Aligned_cols=33 Identities=18% Similarity=0.319 Sum_probs=23.0
Q ss_pred chHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHH
Q 019853 77 NLFDRLARVVKSYANAILSSFEDPEKILEQAVLE 110 (335)
Q Consensus 77 sif~Rl~~lira~in~~ldk~EDPe~~LdQ~Ire 110 (335)
++|.|+++++++.++. +..+--|.-++---|..
T Consensus 2 ~mWErVk~ilks~l~~-aS~iPGPVG~~asGi~g 34 (44)
T 1nov_D 2 TFWERVRSILKSGLNF-ASTIPGPVGVAATGIKG 34 (44)
T ss_pred cHHHHHHHHHHHHHHH-HhcCCCchhHHHHhHHH
Confidence 5899999999998764 45556676555544433
No 140
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=25.12 E-value=2.3e+02 Score=21.72 Aligned_cols=23 Identities=4% Similarity=0.249 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019853 199 LLESKIQEARSKKDTLKARAQSA 221 (335)
Q Consensus 199 ~Le~ki~e~k~kr~~LkAr~~~A 221 (335)
.+..||..++..++.|+.....+
T Consensus 71 ~~~~klr~Yk~dL~~lk~elk~~ 93 (102)
T 1vcs_A 71 MYSNRMRSYKQEMGKLETDFKRS 93 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888888877776655543
No 141
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=25.02 E-value=3.2e+02 Score=23.31 Aligned_cols=50 Identities=8% Similarity=0.189 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 166 LKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (335)
Q Consensus 166 L~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~Lk 215 (335)
-..+.+++..+..+...++.......++...-+.|..+|..+.-.+..+-
T Consensus 89 se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 89 SEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34455666667777777777777777776666677766666666555443
No 142
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=24.95 E-value=1.7e+02 Score=19.96 Aligned_cols=50 Identities=12% Similarity=0.062 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKA 150 (335)
Q Consensus 101 e~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA 150 (335)
..-++..+.++...+...+..+-.....-.++...+..+...|.+|..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi 56 (60)
T 3htk_A 7 KKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQN 56 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45577777888778888888888888888888888888888888887654
No 143
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=24.78 E-value=2.4e+02 Score=27.08 Aligned_cols=19 Identities=11% Similarity=-0.057 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 019853 183 LDQQKNVVNNLVSNTRLLE 201 (335)
Q Consensus 183 le~~~~~v~~Lk~~l~~Le 201 (335)
+.+++.....++..+.+.+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~ 44 (403)
T 4etp_A 26 IKDTELGMKELNEILIKEE 44 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 144
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=24.49 E-value=83 Score=26.08 Aligned_cols=18 Identities=22% Similarity=0.156 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019853 113 DDLVKMRQATAQVLASQK 130 (335)
Q Consensus 113 ~~L~kar~~lA~v~A~~k 130 (335)
+.|..++..++......+
T Consensus 8 d~L~~~r~~l~~~~~~~~ 25 (135)
T 2e7s_A 8 EQLNKSLKTIASQKAAIE 25 (135)
T ss_dssp STTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444433333
No 145
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=24.23 E-value=3.8e+02 Score=23.81 Aligned_cols=65 Identities=18% Similarity=0.282 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 133 ENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKD 212 (335)
Q Consensus 133 e~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~ 212 (335)
+.++..++..+.+++. |+...+..+..++-.+...+..+..|+.++..++.++.....+..
T Consensus 83 e~rI~a~~a~l~dHE~-------------------RIt~~~~~ia~~e~Rit~~e~~i~~l~~~v~~ld~~vt~~et~Is 143 (242)
T 3c9i_A 83 EARIKQLRIDVDDHES-------------------RITANTKAITALNVRVTTAEGEIASLQTNVSALDGRVTTAENNIS 143 (242)
T ss_dssp HHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhcccccHHH-------------------Hhhhhhhhhhhhhheeecccccchhhhhhhhhhcccccccccchh
Q ss_pred HHHH
Q 019853 213 TLKA 216 (335)
Q Consensus 213 ~LkA 216 (335)
.|.+
T Consensus 144 al~~ 147 (242)
T 3c9i_A 144 ALQA 147 (242)
T ss_dssp HHHH
T ss_pred hhhh
No 146
>2z2q_B Coat protein gamma; wild type, icosahedral virus, virus/RNA complex; 2.70A {Flock house virus} PDB: 2q26_B 3lob_D 2bbv_D
Probab=24.19 E-value=50 Score=22.06 Aligned_cols=34 Identities=18% Similarity=0.382 Sum_probs=23.5
Q ss_pred chHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHH
Q 019853 77 NLFDRLARVVKSYANAILSSFEDPEKILEQAVLEM 111 (335)
Q Consensus 77 sif~Rl~~lira~in~~ldk~EDPe~~LdQ~Irem 111 (335)
++|.|+++++++.++.+ ..+--|.-++.--|..+
T Consensus 2 ~~WErVk~ilks~l~a~-S~iPGPVG~~asGi~~l 35 (44)
T 2z2q_B 2 SMWERVKSIIKSSLAAA-SNIPGPIGVAASGISGL 35 (44)
T ss_pred cHHHHHHHHHHHHHHHH-hcCCCchhHHHHhHHHH
Confidence 57999999999988654 45556765555444433
No 147
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=24.09 E-value=2.7e+02 Score=22.13 Aligned_cols=68 Identities=16% Similarity=0.174 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 129 QKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEAR 208 (335)
Q Consensus 129 ~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k 208 (335)
.+.|..+...+..+++.|..+...+ +...-..+..|+..+.++...-+.|...++.|+.+=.++.
T Consensus 5 ~rdL~~~~~~L~~E~e~~k~K~~~~---------------~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLE 69 (111)
T 2v66_B 5 NRDLQADNQRLKYEVEALKEKLEHQ---------------YAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLE 69 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 3456777788888888888776652 2233445566666666666666666666666665555554
Q ss_pred HHH
Q 019853 209 SKK 211 (335)
Q Consensus 209 ~kr 211 (335)
+..
T Consensus 70 R~~ 72 (111)
T 2v66_B 70 RAK 72 (111)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 148
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=23.92 E-value=1.4e+02 Score=21.96 Aligned_cols=27 Identities=7% Similarity=0.233 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 190 VNNLVSNTRLLESKIQEARSKKDTLKA 216 (335)
Q Consensus 190 v~~Lk~~l~~Le~ki~e~k~kr~~LkA 216 (335)
+..|......|+.++.+++.+...|.+
T Consensus 49 I~~L~~~~~~l~~e~~~L~~~~~~L~~ 75 (83)
T 1nkp_B 49 IQYMRRKNHTHQQDIDDLKRQNALLEQ 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444433
No 149
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=23.49 E-value=2.2e+02 Score=20.93 Aligned_cols=32 Identities=19% Similarity=0.292 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 176 ANALKAQLDQQKNVVNNLVSNTRLLESKIQEA 207 (335)
Q Consensus 176 ~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~ 207 (335)
+..++..+...+..+..++.++..++.+|+.+
T Consensus 10 Vk~~eT~iaa~~~ev~t~~~~l~~~e~~vqaL 41 (74)
T 1avy_A 10 IKAIETDIASVRQEVNTAKGNISSLQGDVQAL 41 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccccchhhhheeeccccchhhhhhhhhHHH
Confidence 44445555555555555555555555555444
No 150
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=23.48 E-value=5.2e+02 Score=25.57 Aligned_cols=24 Identities=17% Similarity=0.255 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 190 VNNLVSNTRLLESKIQEARSKKDT 213 (335)
Q Consensus 190 v~~Lk~~l~~Le~ki~e~k~kr~~ 213 (335)
+..++..+..++.++.++..++..
T Consensus 113 ~~~l~~~i~~le~~~~~~~~~~~~ 136 (484)
T 3lss_A 113 SKDLSDQVAGLAKEAQQLEEERDK 136 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443
No 151
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=23.31 E-value=1.8e+02 Score=25.48 Aligned_cols=41 Identities=24% Similarity=0.363 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 182 QLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAK 222 (335)
Q Consensus 182 qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~~~Ak 222 (335)
+++.....|.+|......|..+++....+...|+.+..+++
T Consensus 14 ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~ 54 (190)
T 4emc_A 14 QIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLN 54 (190)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444443334444433333333
No 152
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=23.27 E-value=1.3e+02 Score=18.29 Aligned_cols=28 Identities=21% Similarity=0.308 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 115 LVKMRQATAQVLASQKRLENKCKAAEQA 142 (335)
Q Consensus 115 L~kar~~lA~v~A~~k~le~kl~~~~~~ 142 (335)
+.++.+.+|++-++..++++.+.+++.+
T Consensus 3 vaqlekevaqaeaenyqleqevaqlehe 30 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLEHE 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 4566778888888888888888777654
No 153
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=23.27 E-value=5.5e+02 Score=25.36 Aligned_cols=21 Identities=38% Similarity=0.271 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019853 190 VNNLVSNTRLLESKIQEARSK 210 (335)
Q Consensus 190 v~~Lk~~l~~Le~ki~e~k~k 210 (335)
+..|+..+..+..||+.++..
T Consensus 165 i~~l~~~~~~~~~~i~~l~~~ 185 (461)
T 3ghg_B 165 LRVLRSILENLRSKIQKLESD 185 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344443333
No 154
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=23.10 E-value=2.4e+02 Score=21.13 Aligned_cols=19 Identities=26% Similarity=0.322 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 019853 197 TRLLESKIQEARSKKDTLK 215 (335)
Q Consensus 197 l~~Le~ki~e~k~kr~~Lk 215 (335)
+..++.||.++++.+....
T Consensus 54 V~~lq~Ki~elkrqlAd~v 72 (78)
T 2ic6_A 54 VSALETKLGELKRELADLI 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344555555555444443
No 155
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=23.09 E-value=2.4e+02 Score=22.96 Aligned_cols=35 Identities=17% Similarity=0.125 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Q 019853 131 RLENKCKAAEQASEDWYRKAQLALQKGEEDLAREA 165 (335)
Q Consensus 131 ~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreA 165 (335)
.++.++.+++.++..++..+...-..+.++.-...
T Consensus 10 ~l~~KvAElekkv~~lek~lk~~~e~d~e~y~ke~ 44 (125)
T 2pms_C 10 APQAKIAELENQVHRLEQELKEIDESESEDYAKEG 44 (125)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTTTCC----------
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHH
Confidence 45667777777777777665554444444444444
No 156
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=22.67 E-value=1.5e+02 Score=18.95 Aligned_cols=21 Identities=14% Similarity=0.242 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019853 173 ADNANALKAQLDQQKNVVNNL 193 (335)
Q Consensus 173 e~q~~~le~qle~~~~~v~~L 193 (335)
|+.++.+-..-..++..|..|
T Consensus 7 E~kVEeLl~~~~~Le~EV~RL 27 (36)
T 1kd8_A 7 EAEVEEIESEVWHLENEVARL 27 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHH
Confidence 333333333333333333333
No 157
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=22.57 E-value=5.8e+02 Score=25.33 Aligned_cols=27 Identities=15% Similarity=0.092 Sum_probs=8.0
Q ss_pred eecccccc-CCCCccc--ccCCCcccccCc
Q 019853 51 VTRLRIAP-SSRSHCY--RQGGGALNTRMN 77 (335)
Q Consensus 51 ~~~~~~~~-~~~~~~~--~~~~~~~~~~Ms 77 (335)
++|-|+.- -..+.|- --.|||----||
T Consensus 14 ~RGPR~vE~r~~s~Ck~~~D~pgCaDeDwG 43 (491)
T 1m1j_A 14 GRGPRILENMHESSCKYEKNWPICVDDDWG 43 (491)
T ss_dssp -------------CCSSTTCCCBCCTTSTT
T ss_pred CCCCccccccccccccccCCCCCCcccccc
Confidence 45666655 3345565 556676444444
No 158
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=22.54 E-value=2.6e+02 Score=21.26 Aligned_cols=25 Identities=12% Similarity=0.266 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 190 VNNLVSNTRLLESKIQEARSKKDTL 214 (335)
Q Consensus 190 v~~Lk~~l~~Le~ki~e~k~kr~~L 214 (335)
+..-+..|..++..|...+.++..|
T Consensus 53 l~~h~~ei~~le~~i~rhk~~i~~l 77 (84)
T 1gmj_A 53 ISHHAKEIERLQKEIERHKQSIKKL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333344444444444444444433
No 159
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=22.51 E-value=1.8e+02 Score=19.32 Aligned_cols=21 Identities=19% Similarity=0.374 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019853 190 VNNLVSNTRLLESKIQEARSK 210 (335)
Q Consensus 190 v~~Lk~~l~~Le~ki~e~k~k 210 (335)
+..|.....+|+.+|..+.++
T Consensus 12 ~k~le~~naeLEervstLq~E 32 (42)
T 2oqq_A 12 VKDLENKNSELEERLSTLQNE 32 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 333334444444444444433
No 160
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=22.24 E-value=5.9e+02 Score=25.37 Aligned_cols=66 Identities=17% Similarity=0.169 Sum_probs=30.6
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 147 YRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKD 212 (335)
Q Consensus 147 e~rA~~AL~~G~EdLAreAL~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~ 212 (335)
.+++..+.++-+..+..+=..-++.-+..-..|++.+++..+.+++.+..+.+-+.++...+..+.
T Consensus 32 Ye~~~ae~~a~n~~i~aeNeaikkrNa~aka~Ye~~l~kY~~dlakY~~~~AeY~~kl~aYe~~~~ 97 (497)
T 3iox_A 32 YEAAVAANNAANAALTAENTAIKKRNADAKADYEAKLAKYQADLAKYQKDLADYPVKLKAYEDEQT 97 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444433333322222223333334556666666666666665555555555555444433
No 161
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=22.03 E-value=2.5e+02 Score=21.00 Aligned_cols=36 Identities=25% Similarity=0.240 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 178 ALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDT 213 (335)
Q Consensus 178 ~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~ 213 (335)
.|+.+++.+...-.++...+..++.-+.+++.|.+.
T Consensus 4 eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~ 39 (86)
T 3swk_A 4 ELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQE 39 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444443
No 162
>2xz3_A Maltose ABC transporter periplasmic protein, ENVE glycoprotein; viral protein, viral membrane fusion, hairpin, chimera; HET: MAL; 1.95A {Escherichia coli} PDB: 1mg1_A*
Probab=21.98 E-value=5.1e+02 Score=24.48 Aligned_cols=46 Identities=11% Similarity=-0.013 Sum_probs=26.0
Q ss_pred HHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 153 ALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTR 198 (335)
Q Consensus 153 AL~~G~EdLAreAL~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~ 198 (335)
.+.++.+++..+.-.-.+..++.+..|+.++..+...|.+=+.-|.
T Consensus 372 ~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 417 (463)
T 2xz3_A 372 LSHQRLTSLIHVLEQDQQRLITAINQTHYNLLNVASVVAQNRRGLD 417 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhh
Confidence 3444444444444444555666677777777776666665544443
No 163
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=21.74 E-value=1.8e+02 Score=23.91 Aligned_cols=29 Identities=10% Similarity=0.105 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 185 QQKNVVNNLVSNTRLLESKIQEARSKKDT 213 (335)
Q Consensus 185 ~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~ 213 (335)
+....+.+|.+.+.+++.++++++.+...
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~~~a~ 57 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKSVIAD 57 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666655443
No 164
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=21.51 E-value=1.9e+02 Score=21.58 Aligned_cols=33 Identities=18% Similarity=0.192 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 176 ANALKAQLDQQKNVVNNLVSNTRLLESKIQEAR 208 (335)
Q Consensus 176 ~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k 208 (335)
+..+..+.+.+...+..+.....+++.++.++.
T Consensus 39 vdELt~E~e~l~~El~s~~~~~~r~~~ri~elE 71 (77)
T 2w83_C 39 VDELTCEKDVLQGELEAVKQAKLKLEEKNRELE 71 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444443
No 165
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=21.49 E-value=2.7e+02 Score=21.15 Aligned_cols=33 Identities=21% Similarity=0.238 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 172 YADNANALKAQLDQQKNVVNNLVSNTRLLESKI 204 (335)
Q Consensus 172 ~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki 204 (335)
++.++..+...+..+...+..++..+..++.+|
T Consensus 69 ~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~ 101 (112)
T 1l8d_A 69 YHLDLNNSKNTLAKLIDRKSELERELRRIDMEI 101 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444333
No 166
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=21.42 E-value=2.5e+02 Score=20.70 Aligned_cols=10 Identities=10% Similarity=-0.313 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 019853 143 SEDWYRKAQL 152 (335)
Q Consensus 143 ~~~~e~rA~~ 152 (335)
+..|...-..
T Consensus 16 lk~~f~~Lr~ 25 (80)
T 1nlw_A 16 LRLSLEKLKG 25 (80)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 167
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=21.41 E-value=1.9e+02 Score=19.21 Aligned_cols=26 Identities=15% Similarity=0.210 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 182 QLDQQKNVVNNLVSNTRLLESKIQEA 207 (335)
Q Consensus 182 qle~~~~~v~~Lk~~l~~Le~ki~e~ 207 (335)
.++.....+++.+..+..++.|+.++
T Consensus 10 kI~kVdrEI~Kte~kI~~lqkKlkeL 35 (42)
T 2l5g_B 10 NMDRVDREITMVEQQISKLKKKQQQL 35 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444
No 168
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=21.36 E-value=1.8e+02 Score=19.14 Aligned_cols=40 Identities=18% Similarity=0.170 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 171 SYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSK 210 (335)
Q Consensus 171 ~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~k 210 (335)
++++.+..++..-+.++..--.-++-+.-|+..|..++.+
T Consensus 7 qlenevaslenenetlkkknlhkkdliaylekeianlrkk 46 (49)
T 3he5_A 7 QLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKK 46 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 3455555555555544444333344444455555555444
No 169
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=21.29 E-value=2.2e+02 Score=23.19 Aligned_cols=35 Identities=11% Similarity=0.177 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 173 ADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEA 207 (335)
Q Consensus 173 e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~ 207 (335)
+..+..++..++.....+..++.++..++..|+++
T Consensus 104 ~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l 138 (151)
T 2zdi_C 104 EKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEV 138 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445544444555555554444444444
No 170
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}
Probab=21.28 E-value=4.2e+02 Score=23.32 Aligned_cols=19 Identities=16% Similarity=0.336 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHhHHHHHH
Q 019853 240 LSAFEKMEEKVLTMESQAD 258 (335)
Q Consensus 240 ~~~feRmEeki~~~EA~Ae 258 (335)
....+.|+.-+.......+
T Consensus 249 ~~~~~~~~~~i~~id~~~D 267 (290)
T 3i2w_A 249 PQIYEEFSHTINNADQQKD 267 (290)
T ss_dssp HHHHHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHhcChHHH
Confidence 3556666666665544443
No 171
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=21.05 E-value=4.6e+02 Score=23.65 Aligned_cols=37 Identities=14% Similarity=0.087 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 109 LEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASED 145 (335)
Q Consensus 109 reme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~ 145 (335)
.+++..+.++.+.+......-...+..|...-.+.+.
T Consensus 130 K~~~~~~~k~~k~~~~~~~~l~KaKk~Y~~~c~e~e~ 166 (337)
T 2x3v_A 130 KEAEDGFRKAQKPWAKKMKELEAAKKAYHLACKEERL 166 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666666666666666655555443
No 172
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=21.00 E-value=3.7e+02 Score=22.51 Aligned_cols=23 Identities=0% Similarity=0.105 Sum_probs=16.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Q 019853 99 DPEKILEQAVLEMNDDLVKMRQA 121 (335)
Q Consensus 99 DPe~~LdQ~Ireme~~L~kar~~ 121 (335)
+-...|+..+|+++.++.++.+.
T Consensus 14 ~~~~~L~~~~r~Ldr~~~kle~~ 36 (179)
T 2gd5_A 14 EWSLKIRKEMRVVDRQIRDIQRE 36 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566778888888777766655
No 173
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=20.94 E-value=2.6e+02 Score=21.71 Aligned_cols=11 Identities=36% Similarity=0.519 Sum_probs=7.6
Q ss_pred hHHHHHHHHHH
Q 019853 78 LFDRLARVVKS 88 (335)
Q Consensus 78 if~Rl~~lira 88 (335)
.|.||...+..
T Consensus 37 tfarLc~~Vd~ 47 (96)
T 1t3j_A 37 TFARLCQQVDM 47 (96)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 78888865533
No 174
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=20.45 E-value=6.3e+02 Score=24.98 Aligned_cols=14 Identities=21% Similarity=0.601 Sum_probs=10.2
Q ss_pred CcHHHHHHHHHHHH
Q 019853 157 GEEDLAREALKRRK 170 (335)
Q Consensus 157 G~EdLAreAL~rk~ 170 (335)
|+-+..++.+.++.
T Consensus 13 ~n~~~v~~~~~~R~ 26 (485)
T 3qne_A 13 GDPEIIKASQKKRG 26 (485)
T ss_dssp CCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHcC
Confidence 47788888877764
Done!