Query 019853
Match_columns 335
No_of_seqs 160 out of 814
Neff 6.1
Searched_HMMs 13730
Date Mon Mar 25 08:04:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019853.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019853hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fxka_ a.2.5.1 (A:) Prefoldin 76.8 10 0.00075 27.8 9.8 40 108-147 3-42 (107)
2 d1fpoa2 a.23.1.1 (A:77-171) HS 58.8 27 0.002 24.8 11.0 78 96-180 9-86 (95)
3 d1t72a_ a.7.12.1 (A:) Phosphat 44.8 67 0.0049 25.2 13.6 51 73-123 4-64 (215)
4 d1vcsa1 a.47.2.1 (A:8-96) Vesi 33.8 49 0.0035 23.4 6.2 45 178-222 35-87 (89)
5 d1u5pa1 a.7.1.1 (A:1662-1771) 32.9 70 0.0051 22.0 11.4 60 157-216 32-95 (110)
6 d1fxka_ a.2.5.1 (A:) Prefoldin 30.8 86 0.0062 22.3 11.9 41 172-212 63-103 (107)
7 d1cuna2 a.7.1.1 (A:116-219) Sp 27.0 88 0.0064 21.3 11.8 37 159-195 29-65 (104)
8 d1f5na1 a.114.1.1 (A:284-583) 25.4 1.6E+02 0.011 23.6 13.0 26 81-106 155-180 (300)
9 d1e4ta_ g.9.1.1 (A:) Beta-defe 24.9 5.3 0.00038 23.7 -0.6 21 62-82 4-24 (37)
10 d1yvia1 a.24.10.2 (A:2-143) Hi 24.0 1.3E+02 0.0095 22.2 13.7 72 94-165 33-115 (142)
11 d1gs9a_ a.24.1.1 (A:) Apolipop 21.4 1.5E+02 0.011 21.9 11.3 20 79-98 5-24 (144)
12 d2efla1 a.238.1.4 (A:1-288) Fo 21.1 1.8E+02 0.013 22.8 17.3 134 77-222 67-201 (288)
13 d1vmaa1 a.24.13.1 (A:1-81) Sig 21.1 14 0.00099 25.9 0.9 48 76-127 1-55 (81)
14 d1cuna2 a.7.1.1 (A:116-219) Sp 20.9 1.2E+02 0.0086 20.5 12.0 28 131-158 41-68 (104)
No 1
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=76.76 E-value=10 Score=27.83 Aligned_cols=40 Identities=13% Similarity=0.203 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 108 VLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWY 147 (335)
Q Consensus 108 Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e 147 (335)
+++....+..++..+..+......++.++.++..-+..++
T Consensus 3 lqe~~~~~q~lq~el~~~~~q~~~le~q~~E~~~vl~eL~ 42 (107)
T d1fxka_ 3 VQHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666777777777777777777776665554443
No 2
>d1fpoa2 a.23.1.1 (A:77-171) HSC20 (HSCB), C-terminal oligomerisation domain {Escherichia coli [TaxId: 562]}
Probab=58.84 E-value=27 Score=24.84 Aligned_cols=78 Identities=18% Similarity=0.222 Sum_probs=51.5
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Q 019853 96 SFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADN 175 (335)
Q Consensus 96 k~EDPe~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~q 175 (335)
.+.||+=+.+|+ +.++.|..+...- ....+..-..+.+..+..+......++.+++-+-|...+.+.+-+..-
T Consensus 9 T~~DpeFLMeqM--E~RE~lee~~~~~-----d~~~l~~l~~ei~~~~~~~~~~l~~~~~~~d~~~A~~~~~kLkF~~kl 81 (95)
T d1fpoa2 9 TVRDTAFLMEQL--ELREELDEIEQAK-----DEARLESFIKRVKKMFDTRHQLMVEQLDNETWDAAADTCRKLRFLDKL 81 (95)
T ss_dssp CCSCHHHHHHHH--HHHHHHHHHHHHT-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHH--HHHHHHHHhhcCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhHHHHHH
Confidence 456998777765 5556666654320 112334444556677777778888889999999999998887776654
Q ss_pred HHHHH
Q 019853 176 ANALK 180 (335)
Q Consensus 176 ~~~le 180 (335)
...++
T Consensus 82 ~~ei~ 86 (95)
T d1fpoa2 82 RSSAE 86 (95)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 3
>d1t72a_ a.7.12.1 (A:) Phosphate transport system protein PhoU {Aquifex aeolicus [TaxId: 63363]}
Probab=44.84 E-value=67 Score=25.21 Aligned_cols=51 Identities=18% Similarity=0.290 Sum_probs=28.7
Q ss_pred cccCchHHHH----------HHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 73 NTRMNLFDRL----------ARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATA 123 (335)
Q Consensus 73 ~~~Msif~Rl----------~~lira~in~~ldk~EDPe~~LdQ~Ireme~~L~kar~~lA 123 (335)
|+.|.+++.| ..++...++.+++.++++..-+-+.|.+.++.+......+-
T Consensus 4 ~~~~~~~~~L~~l~~~l~~M~~~v~~~l~~~~~al~~~D~~~a~~v~~~d~~id~l~~~I~ 64 (215)
T d1t72a_ 4 GGGMKLFKELEETKEQVIKMAKLVQEAIDKATEALNKQNVELAEEVIKGDDTIDLLEVDIE 64 (215)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhHHHHHHHHHHHH
Confidence 5556666554 55666777777777765433333344455555555554443
No 4
>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=33.77 E-value=49 Score=23.39 Aligned_cols=45 Identities=9% Similarity=0.336 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 178 ALKAQLDQQKNVVNNLVSNTR--------LLESKIQEARSKKDTLKARAQSAK 222 (335)
Q Consensus 178 ~le~qle~~~~~v~~Lk~~l~--------~Le~ki~e~k~kr~~LkAr~~~Ak 222 (335)
.++..++++...+++|.-.++ .+..||..+++.++.|+.....++
T Consensus 35 ~ie~~leEA~ell~qMelEvr~~p~s~R~~~~~klr~Yk~dl~~lk~elk~a~ 87 (89)
T d1vcsa1 35 NVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKRSR 87 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344444445555555544333 567888888888888877666554
No 5
>d1u5pa1 a.7.1.1 (A:1662-1771) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=32.88 E-value=70 Score=21.98 Aligned_cols=60 Identities=13% Similarity=0.232 Sum_probs=36.9
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q 019853 157 GEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVS----NTRLLESKIQEARSKKDTLKA 216 (335)
Q Consensus 157 G~EdLAreAL~rk~~~e~q~~~le~qle~~~~~v~~Lk~----~l~~Le~ki~e~k~kr~~LkA 216 (335)
++.+-+..-+.+...++..+...+..++.+......|.. ....++.++..+..+-+.|..
T Consensus 32 ~d~~~~~~~~~~h~~~~~ei~~~~~~i~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~ 95 (110)
T d1u5pa1 32 KDLASVNNLLKKHQLLEADISAHEDRLKDLNSQADSLMTSSAFDTSQVKDKRETINGRFQRIKS 95 (110)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSCTHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777777777777777777777666644 223445555555555554443
No 6
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=30.82 E-value=86 Score=22.33 Aligned_cols=41 Identities=12% Similarity=0.148 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 172 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKD 212 (335)
Q Consensus 172 ~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~ 212 (335)
...-...+...++.+...+..|..++..++.++.+++.+..
T Consensus 63 ~~e~~~~l~~~~e~l~~~i~~l~~q~~~l~~~l~~~~~~l~ 103 (107)
T d1fxka_ 63 KDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQ 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555565666666666666666666666555443
No 7
>d1cuna2 a.7.1.1 (A:116-219) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=27.04 E-value=88 Score=21.26 Aligned_cols=37 Identities=11% Similarity=0.186 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 159 EDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVS 195 (335)
Q Consensus 159 EdLAreAL~rk~~~e~q~~~le~qle~~~~~v~~Lk~ 195 (335)
.+-++..+.+...++..+...+..+..+.....+|..
T Consensus 29 ~~~v~~ll~~h~~~~~ei~~~~~~~~~l~~~g~~L~~ 65 (104)
T d1cuna2 29 LAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIK 65 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555555544433
No 8
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.41 E-value=1.6e+02 Score=23.58 Aligned_cols=26 Identities=15% Similarity=-0.011 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHhhccCCHHHHHHH
Q 019853 81 RLARVVKSYANAILSSFEDPEKILEQ 106 (335)
Q Consensus 81 Rl~~lira~in~~ldk~EDPe~~LdQ 106 (335)
+...-+....+....+...-...+..
T Consensus 155 ~~~~~~~~~~~~~~~k~~~~~~~~~~ 180 (300)
T d1f5na1 155 QKLQDLKKKYYEEPRKGIQAEEILQT 180 (300)
T ss_dssp HHHHHHHHHHHHSSCCCTTHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 33333334444443333333333333
No 9
>d1e4ta_ g.9.1.1 (A:) Beta-defensin, BD {Mouse (Mus musculus), MBD5 [TaxId: 10090]}
Probab=24.92 E-value=5.3 Score=23.67 Aligned_cols=21 Identities=38% Similarity=0.947 Sum_probs=17.1
Q ss_pred CcccccCCCcccccCchHHHH
Q 019853 62 SHCYRQGGGALNTRMNLFDRL 82 (335)
Q Consensus 62 ~~~~~~~~~~~~~~Msif~Rl 82 (335)
-.||+.||-+|---.|+|.++
T Consensus 4 racyreggeclqrciglfhki 24 (37)
T d1e4ta_ 4 RACYREGGECLQRCIGLFHKI 24 (37)
T ss_dssp CCHHHHTCEEETTCCTTSEEE
T ss_pred hhHHhhhhHHHHHHHHHHhcc
Confidence 369999999998888888643
No 10
>d1yvia1 a.24.10.2 (A:2-143) Histidine-containing phosphotransfer protein HP1 {Rice (Oryza sativa) [TaxId: 4530]}
Probab=23.97 E-value=1.3e+02 Score=22.20 Aligned_cols=72 Identities=10% Similarity=-0.020 Sum_probs=40.8
Q ss_pred hhccCCH---HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhcCcHHHH
Q 019853 94 LSSFEDP---EKILEQAVLEMNDDLVKMRQATAQV---LASQKRLENKCKAAE-----QASEDWYRKAQLALQKGEEDLA 162 (335)
Q Consensus 94 ldk~EDP---e~~LdQ~Ireme~~L~kar~~lA~v---~A~~k~le~kl~~~~-----~~~~~~e~rA~~AL~~G~EdLA 162 (335)
.+...|| ..+++.++.++...+..+++++... ...-.++-.+++-.- ..+..+....+.+.+.|+-+-+
T Consensus 33 ~~~~~~~~fl~eli~~Fl~~~~~~l~~l~~al~~~~~D~~~~~~~aH~LKGss~~lGa~~l~~~~~~lE~~~~~~~~~~~ 112 (142)
T d1yvia1 33 QDEGGTPGFVSEVVTLFCDDADRIINEIATLLEQPVVNFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQFCQDKSRDGC 112 (142)
T ss_dssp HC---CTTHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhHHhhccHHHHHHHHHHHHHHHHcCCHHHH
Confidence 3334467 4789999999999999998887421 112222333333221 2345556666666677766654
Q ss_pred HHH
Q 019853 163 REA 165 (335)
Q Consensus 163 reA 165 (335)
...
T Consensus 113 ~~~ 115 (142)
T d1yvia1 113 LMA 115 (142)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 11
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]}
Probab=21.35 E-value=1.5e+02 Score=21.89 Aligned_cols=20 Identities=10% Similarity=0.016 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHhhccC
Q 019853 79 FDRLARVVKSYANAILSSFE 98 (335)
Q Consensus 79 f~Rl~~lira~in~~ldk~E 98 (335)
|.-+.+.|+-+++.+-+.+.
T Consensus 5 ~e~~~d~f~~y~~~l~~~a~ 24 (144)
T d1gs9a_ 5 WELALGRFWDYLRWVQTLSE 24 (144)
T ss_dssp HHHHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHHhHH
Confidence 44444444445554444433
No 12
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.10 E-value=1.8e+02 Score=22.83 Aligned_cols=134 Identities=8% Similarity=0.085 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHhhccCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019853 77 NLFDRLARVVKSYANAILSSFEDP-EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQ 155 (335)
Q Consensus 77 sif~Rl~~lira~in~~ldk~EDP-e~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~ 155 (335)
+-+.+.|..+...++.....-..= ..+..+.+..+..-+.+.+...-.+......+++.+......+.+....=..+
T Consensus 67 ~~~~~~~~~~~~~~~~~a~~h~~~a~~l~~~i~~~l~~~~~~~~~~~K~~~~~~~k~~k~~~~~~~~l~k~k~~Y~~~-- 144 (288)
T d2efla1 67 YTSCKAFISNLNEMNDYAGQHEVISENMASQIIVDLARYVQELKQERKSNFHDGRKAQQHIETCWKQLESSKRRFERD-- 144 (288)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 156 KGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAK 222 (335)
Q Consensus 156 ~G~EdLAreAL~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~~~Ak 222 (335)
......+.................+.+++..+.....++..++..........+.++
T Consensus 145 ----------~~e~e~~~~~~~~~~~~~~~~~~~~~K~~~k~~~~~~~~~~a~~~Y~~~v~~~n~~~ 201 (288)
T d2efla1 145 ----------CKEADRAQQYFEKMDADINVTKADVEKARQQAQIRHQMAEDSKADYSSILQKFNHEQ 201 (288)
T ss_dssp ----------HHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 13
>d1vmaa1 a.24.13.1 (A:1-81) Signal recognition particle receptor, FtsY {Thermotoga maritima [TaxId: 2336]}
Probab=21.07 E-value=14 Score=25.88 Aligned_cols=48 Identities=19% Similarity=0.231 Sum_probs=28.5
Q ss_pred CchHHHHHHHHHHH-------HHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853 76 MNLFDRLARVVKSY-------ANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLA 127 (335)
Q Consensus 76 Msif~Rl~~lira~-------in~~ldk~EDPe~~LdQ~Ireme~~L~kar~~lA~v~A 127 (335)
||+|+|++.-+.-. ++.++.+- .+=+..+.|+++.|..+-..+..+..
T Consensus 1 Mg~f~klk~gL~KTr~~~~~~l~~lf~~~----~iDe~~leeLEe~LI~aDvGv~tt~~ 55 (81)
T d1vmaa1 1 MGLFDFLKKGLQKTKETFFGRVVKLLKGK----KLDDETREELEELLIQADVGVETTEY 55 (81)
T ss_dssp -CHHHHHHHHHHHHHHHTHHHHHHHHTTC----CCCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHHccCCHHHHHH
Confidence 89999998765433 33333221 11245566889998887776655443
No 14
>d1cuna2 a.7.1.1 (A:116-219) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=20.94 E-value=1.2e+02 Score=20.53 Aligned_cols=28 Identities=11% Similarity=0.164 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 019853 131 RLENKCKAAEQASEDWYRKAQLALQKGE 158 (335)
Q Consensus 131 ~le~kl~~~~~~~~~~e~rA~~AL~~G~ 158 (335)
.++..+...+..+..+...+..-+..|.
T Consensus 41 ~~~~ei~~~~~~~~~l~~~g~~L~~~~~ 68 (104)
T d1cuna2 41 AFETDFTVHKDRVNDVCANGEDLIKKNN 68 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHcCC
Confidence 3444444444444444444444444444
Done!