BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019856
         (335 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1IU4|A Chain A, Crystal Structure Analysis Of The Microbial
           Transglutaminase
 pdb|1IU4|B Chain B, Crystal Structure Analysis Of The Microbial
           Transglutaminase
 pdb|1IU4|C Chain C, Crystal Structure Analysis Of The Microbial
           Transglutaminase
 pdb|1IU4|D Chain D, Crystal Structure Analysis Of The Microbial
           Transglutaminase
          Length = 331

 Score = 29.3 bits (64), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 10/85 (11%)

Query: 253 AGSAAAEFNEGFIGSKDKFDIEMG-KYGKENDVRLPSILQNL-DYSGIDDNLKKKEGNGA 310
           +G   AEF EG + +K+ FD E G +  +E    +   L+N  D S   DNLKK+  NG 
Sbjct: 101 SGETRAEF-EGRV-AKESFDEEKGFQRAREVASVMNRALENAHDESAYLDNLKKELANGN 158

Query: 311 DAF------DPYFLPSEQVPKYSPR 329
           DA        P++      P +  R
Sbjct: 159 DALRNEDARSPFYSALRNTPSFKER 183


>pdb|3H51|A Chain A, Crystal Structure Of Putative CalciumCALMODULIN DEPENDENT
           PROTEIN Kinase Ii Association Domain (Np_636218.1) From
           Xanthomonas Campestris At 1.70 A Resolution
 pdb|3H51|B Chain B, Crystal Structure Of Putative CalciumCALMODULIN DEPENDENT
           PROTEIN Kinase Ii Association Domain (Np_636218.1) From
           Xanthomonas Campestris At 1.70 A Resolution
          Length = 156

 Score = 29.3 bits (64), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 22/42 (52%)

Query: 219 NRGILKNIKELFFSKIPPSMINFRTWVTEDDDSVAGSAAAEF 260
           +R  ++N  E F +K P  +IN+RT    DDDS   +    F
Sbjct: 62  SREQIENYFEXFLTKKPKGVINYRTVRLLDDDSAVDAGVYTF 103


>pdb|3IU0|A Chain A, Structural Basis For Zymogen Activation And Substrate
           Binding Of Transglutaminase From Streptomyces Mobaraense
          Length = 382

 Score = 28.9 bits (63), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 10/85 (11%)

Query: 253 AGSAAAEFNEGFIGSKDKFDIEMG-KYGKENDVRLPSILQNL-DYSGIDDNLKKKEGNGA 310
           +G   AEF EG + +K+ FD E G +  +E    +   L+N  D S   DNLKK+  NG 
Sbjct: 146 SGETRAEF-EGRV-AKESFDEEKGFQRAREVASVMNRALENAHDESAYLDNLKKELANGN 203

Query: 311 DAF------DPYFLPSEQVPKYSPR 329
           DA        P++      P +  R
Sbjct: 204 DALRNEDARSPFYSALRNTPSFKER 228


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.141    0.451 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,328,922
Number of Sequences: 62578
Number of extensions: 429067
Number of successful extensions: 768
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 767
Number of HSP's gapped (non-prelim): 3
length of query: 335
length of database: 14,973,337
effective HSP length: 99
effective length of query: 236
effective length of database: 8,778,115
effective search space: 2071635140
effective search space used: 2071635140
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)