Query 019856
Match_columns 335
No_of_seqs 316 out of 1739
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 08:07:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019856.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019856hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayj_A 50S ribosomal protein L 74.2 1.4 4.8E-05 30.6 1.7 28 86-113 18-45 (56)
2 3j21_g 50S ribosomal protein L 70.3 2.6 9E-05 28.7 2.4 28 86-113 13-40 (51)
3 1wfk_A Zinc finger, FYVE domai 58.3 4.2 0.00014 30.7 1.7 26 86-111 8-35 (88)
4 3t7l_A Zinc finger FYVE domain 55.8 7.2 0.00024 29.4 2.7 24 88-111 21-46 (90)
5 1vfy_A Phosphatidylinositol-3- 52.6 5.8 0.0002 28.6 1.6 23 89-111 13-37 (73)
6 1joc_A EEA1, early endosomal a 51.5 6.6 0.00023 31.5 2.0 24 88-111 70-95 (125)
7 1dvp_A HRS, hepatocyte growth 51.2 6 0.0002 34.7 1.8 26 87-112 161-188 (220)
8 1z2q_A LM5-1; membrane protein 50.3 7.3 0.00025 28.9 1.9 25 87-111 21-47 (84)
9 2dkt_A Ring finger and CHY zin 46.7 7.5 0.00026 32.2 1.6 46 81-126 77-126 (143)
10 3zyq_A Hepatocyte growth facto 45.3 7.9 0.00027 34.2 1.6 25 88-112 165-191 (226)
11 1x4u_A Zinc finger, FYVE domai 43.4 7.2 0.00025 28.9 0.9 24 88-111 15-40 (84)
12 2yw8_A RUN and FYVE domain-con 42.1 7.5 0.00026 28.7 0.8 24 88-111 20-45 (82)
13 1y02_A CARP2, FYVE-ring finger 39.3 11 0.00036 30.2 1.4 24 88-111 20-45 (120)
14 3u5e_m 60S ribosomal protein L 33.4 18 0.00062 28.6 1.9 25 87-111 93-119 (128)
15 2vrw_B P95VAV, VAV1, proto-onc 29.1 17 0.00059 34.4 1.2 28 86-113 356-386 (406)
16 2cr8_A MDM4 protein; ZF-ranbp 26.3 29 0.001 23.4 1.6 20 89-108 13-32 (53)
17 3arc_T Photosystem II reaction 23.5 1.3E+02 0.0045 18.2 4.0 16 29-44 16-31 (32)
18 3mpx_A FYVE, rhogef and PH dom 23.4 17 0.00058 34.6 0.0 25 87-111 375-401 (434)
19 2c6a_A Ubiquitin-protein ligas 22.5 38 0.0013 22.4 1.5 21 88-108 14-34 (46)
20 3j20_Y 30S ribosomal protein S 22.1 35 0.0012 22.8 1.4 24 86-109 18-45 (50)
21 2apo_B Ribosome biogenesis pro 21.1 48 0.0016 23.2 1.9 22 86-109 5-26 (60)
No 1
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=74.24 E-value=1.4 Score=30.58 Aligned_cols=28 Identities=29% Similarity=0.612 Sum_probs=24.1
Q ss_pred ceeeccccccccCCCCccCCCCCccccc
Q 019856 86 RVKFCDTCLLYRPPRASHCSICNNCIQK 113 (335)
Q Consensus 86 ~~k~C~tC~~~kP~Rs~HC~~C~~CV~r 113 (335)
..+.|..|...-|+|+..|+.||..-+|
T Consensus 18 ~k~ICrkC~ARnp~~A~~CRKCg~~~LR 45 (56)
T 2ayj_A 18 LKKVCRKCGALNPIRATKCRRCHSTNLR 45 (56)
T ss_dssp CCEEETTTCCEECTTCSSCTTTCCCCEE
T ss_pred chhhhccccCcCCcccccccCCCCCCCC
Confidence 3579999999999999999999876554
No 2
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=70.29 E-value=2.6 Score=28.70 Aligned_cols=28 Identities=21% Similarity=0.369 Sum_probs=24.2
Q ss_pred ceeeccccccccCCCCccCCCCCccccc
Q 019856 86 RVKFCDTCLLYRPPRASHCSICNNCIQK 113 (335)
Q Consensus 86 ~~k~C~tC~~~kP~Rs~HC~~C~~CV~r 113 (335)
..+.|..|...-|+++..|+.||.--+|
T Consensus 13 ~k~iCpkC~a~~~~gaw~CrKCG~~~lr 40 (51)
T 3j21_g 13 KKYVCLRCGATNPWGAKKCRKCGYKRLR 40 (51)
T ss_dssp SEEECTTTCCEECTTCSSCSSSSSCCCE
T ss_pred CCccCCCCCCcCCCCceecCCCCCcccc
Confidence 3578999999999999999999986554
No 3
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=58.28 E-value=4.2 Score=30.70 Aligned_cols=26 Identities=15% Similarity=0.337 Sum_probs=18.7
Q ss_pred ceeeccccccc--cCCCCccCCCCCccc
Q 019856 86 RVKFCDTCLLY--RPPRASHCSICNNCI 111 (335)
Q Consensus 86 ~~k~C~tC~~~--kP~Rs~HC~~C~~CV 111 (335)
....|..|... --.|-|||+.||+-+
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vf 35 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAF 35 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEE
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEE
Confidence 34578888753 236889999999754
No 4
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=55.84 E-value=7.2 Score=29.41 Aligned_cols=24 Identities=25% Similarity=0.629 Sum_probs=17.1
Q ss_pred eecccccccc--CCCCccCCCCCccc
Q 019856 88 KFCDTCLLYR--PPRASHCSICNNCI 111 (335)
Q Consensus 88 k~C~tC~~~k--P~Rs~HC~~C~~CV 111 (335)
..|..|...- -.|-|||+.||+-+
T Consensus 21 ~~C~~C~~~F~~~~RrhhCr~CG~v~ 46 (90)
T 3t7l_A 21 PNCMNCQVKFTFTKRRHHCRACGKVF 46 (90)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CcCcCCCCcccchhhCccccCCCCEE
Confidence 4688887422 35889999998754
No 5
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=52.64 E-value=5.8 Score=28.63 Aligned_cols=23 Identities=26% Similarity=0.556 Sum_probs=16.8
Q ss_pred eccccccc--cCCCCccCCCCCccc
Q 019856 89 FCDTCLLY--RPPRASHCSICNNCI 111 (335)
Q Consensus 89 ~C~tC~~~--kP~Rs~HC~~C~~CV 111 (335)
.|..|... --.|-|||+.||+-+
T Consensus 13 ~C~~C~~~F~~~~RrHHCR~CG~v~ 37 (73)
T 1vfy_A 13 ACMICSKKFSLLNRKHHCRSCGGVF 37 (73)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred cccCCCCccCCccccccCCCCCEEE
Confidence 58888753 235899999999754
No 6
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=51.49 E-value=6.6 Score=31.53 Aligned_cols=24 Identities=29% Similarity=0.552 Sum_probs=17.6
Q ss_pred eeccccccc--cCCCCccCCCCCccc
Q 019856 88 KFCDTCLLY--RPPRASHCSICNNCI 111 (335)
Q Consensus 88 k~C~tC~~~--kP~Rs~HC~~C~~CV 111 (335)
..|..|... --.|-|||+.||+-+
T Consensus 70 ~~C~~C~~~Fs~~~RrHHCR~CG~vf 95 (125)
T 1joc_A 70 QNCMACGKGFSVTVRRHHCRQCGNIF 95 (125)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CCCcCcCCccccccccccCCCCCeEE
Confidence 468888753 236899999999754
No 7
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=51.19 E-value=6 Score=34.71 Aligned_cols=26 Identities=23% Similarity=0.583 Sum_probs=18.9
Q ss_pred eeeccccccc--cCCCCccCCCCCcccc
Q 019856 87 VKFCDTCLLY--RPPRASHCSICNNCIQ 112 (335)
Q Consensus 87 ~k~C~tC~~~--kP~Rs~HC~~C~~CV~ 112 (335)
...|..|... --.|-|||+.||+.+-
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C 188 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFC 188 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEEC
T ss_pred CCccCCCCCccCCcccccccCCcCCEEC
Confidence 3579888753 2358999999998543
No 8
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=50.31 E-value=7.3 Score=28.89 Aligned_cols=25 Identities=24% Similarity=0.549 Sum_probs=17.8
Q ss_pred eeecccccccc--CCCCccCCCCCccc
Q 019856 87 VKFCDTCLLYR--PPRASHCSICNNCI 111 (335)
Q Consensus 87 ~k~C~tC~~~k--P~Rs~HC~~C~~CV 111 (335)
...|..|...= -.|-|||+.||+-+
T Consensus 21 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~ 47 (84)
T 1z2q_A 21 APACNGCGCVFTTTVRRHHCRNCGYVL 47 (84)
T ss_dssp CCBCTTTCCBCCTTSCCEECTTTCCEE
T ss_pred CCCCcCcCCccccchhcccccCCCcEE
Confidence 34688887532 35899999998754
No 9
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=46.65 E-value=7.5 Score=32.16 Aligned_cols=46 Identities=26% Similarity=0.603 Sum_probs=33.1
Q ss_pred cCceeceeeccccccccCC-CCccCCCCCcccccc--c-ccCcccccccc
Q 019856 81 NGHSVRVKFCDTCLLYRPP-RASHCSICNNCIQKF--D-HHCPWVGQCIG 126 (335)
Q Consensus 81 ~g~~~~~k~C~tC~~~kP~-Rs~HC~~C~~CV~r~--D-HHCpWi~nCIG 126 (335)
.|.....-||..|++|.+. ..+||..||-|-..- | -||.=-|.|+.
T Consensus 77 Cg~~f~~Y~C~~C~l~d~~k~~yHC~~CgiCR~G~~~~ffHC~~C~~C~s 126 (143)
T 2dkt_A 77 CSTLFGEYYCSICHLFDKDKRQYHCESCGICRIGPKEDFFHCLKCNLCLT 126 (143)
T ss_dssp SCCBSCSEECSSSCCEECSSSEEEETTTTEEEESCGGGEEEETTTTEEEE
T ss_pred CCccceeeEeceeecccCCCceecCCCCCceeccCCcCcEECCcCCeeec
Confidence 3445556799999999665 468999999888762 2 37777777754
No 10
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=45.29 E-value=7.9 Score=34.21 Aligned_cols=25 Identities=24% Similarity=0.598 Sum_probs=17.6
Q ss_pred eeccccccc--cCCCCccCCCCCcccc
Q 019856 88 KFCDTCLLY--RPPRASHCSICNNCIQ 112 (335)
Q Consensus 88 k~C~tC~~~--kP~Rs~HC~~C~~CV~ 112 (335)
..|..|... ---|-|||+.||+.+=
T Consensus 165 ~~C~~C~~~F~~~~RrhHCR~CG~v~C 191 (226)
T 3zyq_A 165 EECHRCRVQFGVMTRKHHCRACGQIFC 191 (226)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEEC
T ss_pred CCCcCcCCCCCccccccccCCCcCEeC
Confidence 478888742 2348899999998543
No 11
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.40 E-value=7.2 Score=28.91 Aligned_cols=24 Identities=25% Similarity=0.515 Sum_probs=17.2
Q ss_pred eeccccccc--cCCCCccCCCCCccc
Q 019856 88 KFCDTCLLY--RPPRASHCSICNNCI 111 (335)
Q Consensus 88 k~C~tC~~~--kP~Rs~HC~~C~~CV 111 (335)
..|..|... --.|-|||+.||+-+
T Consensus 15 ~~C~~C~~~F~~~~RrHHCR~CG~vf 40 (84)
T 1x4u_A 15 GNCTGCSATFSVLKKRRSCSNCGNSF 40 (84)
T ss_dssp SSCSSSCCCCCSSSCCEECSSSCCEE
T ss_pred CcCcCcCCccccchhhhhhcCCCcEE
Confidence 467777653 346899999999743
No 12
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=42.12 E-value=7.5 Score=28.70 Aligned_cols=24 Identities=25% Similarity=0.598 Sum_probs=17.5
Q ss_pred eecccccccc--CCCCccCCCCCccc
Q 019856 88 KFCDTCLLYR--PPRASHCSICNNCI 111 (335)
Q Consensus 88 k~C~tC~~~k--P~Rs~HC~~C~~CV 111 (335)
..|..|...= -.|-|||+.||+-+
T Consensus 20 ~~C~~C~~~Fs~~~RrHHCR~CG~v~ 45 (82)
T 2yw8_A 20 THCRQCEKEFSISRRKHHCRNCGHIF 45 (82)
T ss_dssp CBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred CcccCcCCcccCccccccCCCCCCEE
Confidence 4688887532 35899999999854
No 13
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=39.31 E-value=11 Score=30.24 Aligned_cols=24 Identities=21% Similarity=0.509 Sum_probs=16.9
Q ss_pred eeccccccc--cCCCCccCCCCCccc
Q 019856 88 KFCDTCLLY--RPPRASHCSICNNCI 111 (335)
Q Consensus 88 k~C~tC~~~--kP~Rs~HC~~C~~CV 111 (335)
..|..|... -..|-|||+.||+.+
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~if 45 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKKNF 45 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCCEE
T ss_pred CcccCcCCccccccccccCCCCCCee
Confidence 367777642 235899999999853
No 14
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=33.35 E-value=18 Score=28.63 Aligned_cols=25 Identities=32% Similarity=0.801 Sum_probs=21.7
Q ss_pred eeeccccccccCCCCccCCC--CCccc
Q 019856 87 VKFCDTCLLYRPPRASHCSI--CNNCI 111 (335)
Q Consensus 87 ~k~C~tC~~~kP~Rs~HC~~--C~~CV 111 (335)
.+.|..|...-|+|+..|+. ||..-
T Consensus 93 ~~ic~~~~~~~~~~~~~~~~~~c~~~~ 119 (128)
T 3u5e_m 93 KSVCRKCYARLPPRATNCRKRKCGHTN 119 (128)
T ss_dssp CEEETTTCCEECTTCSSCSCTTTTSCC
T ss_pred eEeeccccccCCchhhccchhhCCCcc
Confidence 58999999999999999994 87643
No 15
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=29.14 E-value=17 Score=34.35 Aligned_cols=28 Identities=18% Similarity=0.403 Sum_probs=20.7
Q ss_pred ceeecccccccc---CCCCccCCCCCccccc
Q 019856 86 RVKFCDTCLLYR---PPRASHCSICNNCIQK 113 (335)
Q Consensus 86 ~~k~C~tC~~~k---P~Rs~HC~~C~~CV~r 113 (335)
+..+|..|...- -.|-|||+.||..|.+
T Consensus 356 ~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~ 386 (406)
T 2vrw_B 356 ETTSCKACQMLLRGTFYQGYRCYRCRAPAHK 386 (406)
T ss_dssp SCCBCTTTCCBCCSSSSCEEEETTTCCEECG
T ss_pred CCCCCccccchhceeCCCCCCCCCCcCccch
Confidence 457999998533 4588999999875554
No 16
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=26.33 E-value=29 Score=23.45 Aligned_cols=20 Identities=25% Similarity=0.679 Sum_probs=15.0
Q ss_pred eccccccccCCCCccCCCCC
Q 019856 89 FCDTCLLYRPPRASHCSICN 108 (335)
Q Consensus 89 ~C~tC~~~kP~Rs~HC~~C~ 108 (335)
.|..|+..-||-..||..|-
T Consensus 13 kC~~C~k~N~Pl~ryC~rCw 32 (53)
T 2cr8_A 13 QCTECKKFNSPSKRYCFRCW 32 (53)
T ss_dssp ECSSSCCEECSSCCBCTTTC
T ss_pred ecccccccCCCccchhHHHH
Confidence 58888888888777777664
No 17
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=23.51 E-value=1.3e+02 Score=18.23 Aligned_cols=16 Identities=31% Similarity=0.484 Sum_probs=10.6
Q ss_pred HHHHHHHhcCCcccCC
Q 019856 29 TFLFMTSGRDPGIIPR 44 (335)
Q Consensus 29 ~~l~~t~~~DPG~vPr 44 (335)
+.+|...++||=-+++
T Consensus 16 iiFFAI~FRePPri~~ 31 (32)
T 3arc_T 16 LFFFAIFFREPPRITK 31 (32)
T ss_dssp HHHHHHHTSCCCCCC-
T ss_pred HHHHhhhhcCCCCCCC
Confidence 3466778899976653
No 18
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=23.39 E-value=17 Score=34.60 Aligned_cols=25 Identities=28% Similarity=0.615 Sum_probs=0.0
Q ss_pred eeeccccccc--cCCCCccCCCCCccc
Q 019856 87 VKFCDTCLLY--RPPRASHCSICNNCI 111 (335)
Q Consensus 87 ~k~C~tC~~~--kP~Rs~HC~~C~~CV 111 (335)
...|..|... --.|-|||+.||+.+
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~ 401 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIV 401 (434)
T ss_dssp ---------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEe
Confidence 3467777642 224789999998743
No 19
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=22.47 E-value=38 Score=22.40 Aligned_cols=21 Identities=38% Similarity=0.816 Sum_probs=16.4
Q ss_pred eeccccccccCCCCccCCCCC
Q 019856 88 KFCDTCLLYRPPRASHCSICN 108 (335)
Q Consensus 88 k~C~tC~~~kP~Rs~HC~~C~ 108 (335)
-.|..|+..-||-..||..|-
T Consensus 14 WkC~~C~~~N~Pl~r~C~rCw 34 (46)
T 2c6a_A 14 WKCTSCNEMNPPLPSHCNRCW 34 (46)
T ss_dssp EECTTTCCEECSSCSSCTTTC
T ss_pred EecccccccCCCccchhhHHH
Confidence 369999988888887877664
No 20
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.10 E-value=35 Score=22.77 Aligned_cols=24 Identities=25% Similarity=0.461 Sum_probs=14.3
Q ss_pred ceeecccccccc---C-CCCccCCCCCc
Q 019856 86 RVKFCDTCLLYR---P-PRASHCSICNN 109 (335)
Q Consensus 86 ~~k~C~tC~~~k---P-~Rs~HC~~C~~ 109 (335)
..++|+.|..-. + .-.++|..|+.
T Consensus 18 ~~k~CP~CG~~~fm~~~~~R~~C~kCG~ 45 (50)
T 3j20_Y 18 KNKFCPRCGPGVFMADHGDRWACGKCGY 45 (50)
T ss_dssp SSEECSSSCSSCEEEECSSEEECSSSCC
T ss_pred ecccCCCCCCceEEecCCCeEECCCCCC
Confidence 468999997511 1 12456776663
No 21
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=21.12 E-value=48 Score=23.15 Aligned_cols=22 Identities=36% Similarity=0.813 Sum_probs=17.1
Q ss_pred ceeeccccccccCCCCccCCCCCc
Q 019856 86 RVKFCDTCLLYRPPRASHCSICNN 109 (335)
Q Consensus 86 ~~k~C~tC~~~kP~Rs~HC~~C~~ 109 (335)
+.+.|..|..+-- .+.|..||.
T Consensus 5 ~mr~C~~CgvYTL--k~~CP~CG~ 26 (60)
T 2apo_B 5 RMKKCPKCGLYTL--KEICPKCGE 26 (60)
T ss_dssp CCEECTTTCCEES--SSBCSSSCS
T ss_pred hceeCCCCCCEec--cccCcCCCC
Confidence 4678999988777 677888875
Done!