BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019857
(335 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 276 bits (705), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 138/341 (40%), Positives = 206/341 (60%), Gaps = 15/341 (4%)
Query: 3 VERVQAIASLSHSNGTIPAEFVRPEKEQPASATY-----HGPAPEIPTIDL------DDP 51
VERV+++A +IP E++RP++E + P++PTIDL D+
Sbjct: 3 VERVESLAK--SGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEK 60
Query: 52 VQDRLVRSIAEASREWGIFQVTNHGIPSDLIGKLQAVGKEFFELPQEEKEVYSRPADAKD 111
+++ + + +AS +WG+ + NHGIP+DL+ +++ G+EFF L EEKE Y+
Sbjct: 61 IRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGK 120
Query: 112 VQGYGTKLQKEVEGKKSWVDHLFHRVWPPSSINYRFWPNNPPSYRAVNEEYAKYMREVVD 171
+QGYG+KL G+ W D+ FH +P + WP P Y EYAK +R +
Sbjct: 121 IQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLAT 180
Query: 172 KLF-TYXXXXXXXXXXXXKEAAGGDDIEYMLKINYYPPCPRPDLALGVVAHTDLSALTVL 230
K+F KE G +++ +KINYYP CP+P+LALGV AHTD+SALT +
Sbjct: 181 KVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFI 240
Query: 231 VPNEVPGLQVFKDDRWIDAKYIPNALIIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSW 290
+ N VPGLQ+F + +W+ AK +P+++++HIGD +EILSNGKYK++LHR VNK+K R+SW
Sbjct: 241 LHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISW 300
Query: 291 PVFLEPPADTVV-GPLPQLVDDENPPKYKAKKFKDYSYCKL 330
VF EPP D +V PLP++V E+P K+ + F + KL
Sbjct: 301 AVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEHKL 341
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 276 bits (705), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 138/341 (40%), Positives = 206/341 (60%), Gaps = 15/341 (4%)
Query: 3 VERVQAIASLSHSNGTIPAEFVRPEKEQPA-----SATYHGPAPEIPTIDL------DDP 51
VERV+++A +IP E++RP++E + P++PTIDL D+
Sbjct: 4 VERVESLAK--SGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEK 61
Query: 52 VQDRLVRSIAEASREWGIFQVTNHGIPSDLIGKLQAVGKEFFELPQEEKEVYSRPADAKD 111
+++ + + +AS +WG+ + NHGIP+DL+ +++ G+EFF L EEKE Y+
Sbjct: 62 IRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGK 121
Query: 112 VQGYGTKLQKEVEGKKSWVDHLFHRVWPPSSINYRFWPNNPPSYRAVNEEYAKYMREVVD 171
+QGYG+KL G+ W D+ FH +P + WP P Y EYAK +R +
Sbjct: 122 IQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLAT 181
Query: 172 KLF-TYXXXXXXXXXXXXKEAAGGDDIEYMLKINYYPPCPRPDLALGVVAHTDLSALTVL 230
K+F KE G +++ +KINYYP CP+P+LALGV AHTD+SALT +
Sbjct: 182 KVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFI 241
Query: 231 VPNEVPGLQVFKDDRWIDAKYIPNALIIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSW 290
+ N VPGLQ+F + +W+ AK +P+++++HIGD +EILSNGKYK++LHR VNK+K R+SW
Sbjct: 242 LHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISW 301
Query: 291 PVFLEPPADTVV-GPLPQLVDDENPPKYKAKKFKDYSYCKL 330
VF EPP D +V PLP++V E+P K+ + F + KL
Sbjct: 302 AVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEHKL 342
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 270 bits (689), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 138/341 (40%), Positives = 202/341 (59%), Gaps = 15/341 (4%)
Query: 3 VERVQAIASLSHSNGTIPAEFVRPEKEQPASATY-----HGPAPEIPTIDL------DDP 51
VERV+++A +IP E++RP++E + P++PTIDL D+
Sbjct: 4 VERVESLAK--SGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEK 61
Query: 52 VQDRLVRSIAEASREWGIFQVTNHGIPSDLIGKLQAVGKEFFELPQEEKEVYSRPADAKD 111
+++ + + +AS +WG+ + NHGIP+DL +++ G+EFF L EEKE Y+
Sbjct: 62 IRENCIEELKKASLDWGVXHLINHGIPADLXERVKKAGEEFFSLSVEEKEKYANDQATGK 121
Query: 112 VQGYGTKLQKEVEGKKSWVDHLFHRVWPPSSINYRFWPNNPPSYRAVNEEYAKYMREVVD 171
+QGYG+KL G+ W D+ FH +P + WP P Y EYAK +R +
Sbjct: 122 IQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLAT 181
Query: 172 KLF-TYXXXXXXXXXXXXKEAAGGDDIEYMLKINYYPPCPRPDLALGVVAHTDLSALTVL 230
K+F KE G +++ KINYYP CP+P+LALGV AHTD+SALT +
Sbjct: 182 KVFKALSVGLGLEPDRLEKEVGGLEELLLQXKINYYPKCPQPELALGVEAHTDVSALTFI 241
Query: 231 VPNEVPGLQVFKDDRWIDAKYIPNALIIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSW 290
+ N VPGLQ+F + +W+ AK +P++++ HIGD +EILSNGKYK++LHR VNK+K R+SW
Sbjct: 242 LHNXVPGLQLFYEGKWVTAKCVPDSIVXHIGDTLEILSNGKYKSILHRGLVNKEKVRISW 301
Query: 291 PVFLEPPADTVV-GPLPQLVDDENPPKYKAKKFKDYSYCKL 330
VF EPP D +V PLP+ V E+P K+ + F + KL
Sbjct: 302 AVFCEPPKDKIVLKPLPEXVSVESPAKFPPRTFAQHIEHKL 342
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 140 bits (353), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 86/271 (31%), Positives = 140/271 (51%), Gaps = 14/271 (5%)
Query: 60 IAEASREWGIFQVTNHGIPSDLIGKLQAVGKEFFELPQEEKEVYSRPADAKDVQGYGTKL 119
I +A WG F++ NHGIP ++ ++ K ++ E++ + +K ++G +
Sbjct: 24 IKDACENWGFFELVNHGIPREVXDTVEKXTKGHYKKCXEQR--FKELVASKALEG----V 77
Query: 120 QKEVEGKKSWVDHLFHRVWPPSSINYRFWPNNPPSYRAVNEEYAKYMREVVDKLFTYXXX 179
Q EV W F + P S+I+ P+ YR V ++AK + ++ ++L
Sbjct: 78 QAEVT-DXDWESTFFLKHLPISNISE--VPDLDEEYREVXRDFAKRLEKLAEELLDLLCE 134
Query: 180 XXXXXXXXXKEAA-GGDDIEYMLKINYYPPCPRPDLALGVVAHTDLSALTVLVPNE-VPG 237
K A G + K++ YPPCP+PDL G+ AHTD + +L ++ V G
Sbjct: 135 NLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSG 194
Query: 238 LQVFKDDRWIDAKYIPNALIIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPP 297
LQ+ KD +WID +++++++GDQ+E+++NGKYK+V HR KD R S F P
Sbjct: 195 LQLLKDGQWIDVPPXRHSIVVNLGDQLEVITNGKYKSVXHRVIAQKDGARXSLASFYNPG 254
Query: 298 ADTVVGPLPQLVD---DENPPKYKAKKFKDY 325
+D V+ P P LV+ +EN Y F DY
Sbjct: 255 SDAVIYPAPALVEKEAEENKQVYPKFVFDDY 285
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 69/285 (24%), Positives = 120/285 (42%), Gaps = 35/285 (12%)
Query: 55 RLVRSIAEASREWGIFQVTNHGIPSDLIGKLQAVGKEFFELPQEEKEVYSR-PADAKDVQ 113
R + + + +G ++++ + I K FF LP E K+ Y+ A+
Sbjct: 21 RFAQELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGVKGGARGYI 80
Query: 114 GYGTKLQKEVEG---KKSWVDHLFHRVWPPSSINYRF--------WPNNPPSYRA----V 158
+G + K + K+ W R PP +RF WP P+++ +
Sbjct: 81 PFGVETAKGADHYDLKEFWHXG---RDLPPG---HRFRAHXADNVWPAEIPAFKHDVSWL 134
Query: 159 NEEYAKYMREVVDKLFTYXXXXXXXXXXXXKEAAGGDDIEYMLKINYYPPCPRPDLALGV 218
+V++ + TY + D +L++ +YPP P+ +
Sbjct: 135 YNSLDGXGGKVLEAIATYLKLERDFFKPTVQ------DGNSVLRLLHYPPIPKDATGVRA 188
Query: 219 VAHTDLSALTVLVPNEVPGLQVF-KDDRWIDAKYIPNALIIHIGDQIEILSNGKYKAVLH 277
AH D++ +T+L+ E GL+V +D +W+ P L+I+IGD +E L+N + +H
Sbjct: 189 GAHGDINTITLLLGAEEGGLEVLDRDGQWLPINPPPGCLVINIGDXLERLTNNVLPSTVH 248
Query: 278 RTTVN-----KDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKY 317
R VN + R S P FL +D + L V ENP +Y
Sbjct: 249 R-VVNPPPERRGVPRYSTPFFLHFASDYEIKTLQNCVTAENPDRY 292
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/265 (25%), Positives = 115/265 (43%), Gaps = 38/265 (14%)
Query: 57 VRSIAEASREWGIFQVTNHGIPSDLIGKLQAVGKEFFELPQEEKEVYSR-------PAD- 108
+ E+ RE G ++NH I +L+ ++ + FF + + ++R PA
Sbjct: 15 AKRFVESLRETGFGVLSNHPIDKELVERIYTEWQAFFNSEAKNEFXFNRETHDGFFPASI 74
Query: 109 AKDVQGYGTKLQKEVEGKKSWVDHLFHRVWPPSSINYRFWPNNPPSYRA----VNEEYAK 164
++ +G+ K KE ++ V+P W P S RA E+
Sbjct: 75 SETAKGHTVKDIKE-----------YYHVYP--------WGRIPDSLRANILAYYEKANT 115
Query: 165 YMREVVDKLFTYXXXXXXXXXXXXKEAAGGDDIEYMLKINYYPPCPRPDL--ALGVVAHT 222
E+++ + TY + + +L+I +YPP + A+ AH
Sbjct: 116 LASELLEWIETYSPDEIKAKFSIPLPEXIANSHKTLLRILHYPPXTGDEEXGAIRAAAHE 175
Query: 223 DLSALTVLVPNEVPGLQV-FKDDRWIDAKYIPNALIIHIGDQIEILSNGKYKAVLHRTT- 280
D++ +TVL PGLQV KD W+D +II+IGD ++ S+G + + HR
Sbjct: 176 DINLITVLPTANEPGLQVKAKDGSWLDVPSDFGNIIINIGDXLQEASDGYFPSTSHRVIN 235
Query: 281 ---VNKDKTRMSWPVFLEPPADTVV 302
+K K+R+S P+FL P V+
Sbjct: 236 PEGTDKTKSRISLPLFLHPHPSVVL 260
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 74/312 (23%), Positives = 118/312 (37%), Gaps = 44/312 (14%)
Query: 43 IPTIDL------DDPVQDRLVRSIAEASREWGIFQVTNHGIPSDLIGKLQAVGKEFFE-- 94
+P ID+ D + R+ + I ASR+ G F NHGI + +L KEF
Sbjct: 9 VPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGIN---VQRLSQKTKEFHMSI 65
Query: 95 LPQEEKEVYSRPADAKDVQGYGTKLQKEVEGKKSWVDHLF------------HRVWPPSS 142
P+E+ ++ R + + + GKK+ + P
Sbjct: 66 TPEEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQAKTPTHE 125
Query: 143 INYRFWPNNP--PSYRAVNEEYAKYMREVVDKLFT-YXXXXXXXXXXXXKEAAGGDDIEY 199
+N WP+ P ++ E+Y + + L Y + D +
Sbjct: 126 VN--VWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDTLAS 183
Query: 200 MLKINYYPPCPRPDLALGVVA---------HTDLSALTVLVPNEVPGLQVFKDDRWIDAK 250
++ I Y P P+ A+ A H D+S +TVL + V LQV + D +
Sbjct: 184 VVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETAAGYQDIE 243
Query: 251 YIPNALIIHIGDQIEILSNGKYKAVLHRTT-VNKDKTRMSWPVFLEPPADTVVGPL---- 305
+I+ G + L+N YKA +HR VN + R S P F+ D+V+ P
Sbjct: 244 ADDTGYLINCGSYMAHLTNNYYKAPIHRVKWVNAE--RQSLPFFVNLGYDSVIDPFDPRE 301
Query: 306 PQLVDDENPPKY 317
P D P Y
Sbjct: 302 PNGKSDREPLSY 313
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 74/312 (23%), Positives = 118/312 (37%), Gaps = 44/312 (14%)
Query: 43 IPTIDL------DDPVQDRLVRSIAEASREWGIFQVTNHGIPSDLIGKLQAVGKEFFE-- 94
+P ID+ D + R+ + I ASR+ G F NHGI + +L KEF
Sbjct: 9 VPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGIN---VQRLSQKTKEFHMSI 65
Query: 95 LPQEEKEVYSRPADAKDVQGYGTKLQKEVEGKKSWVDHLF------------HRVWPPSS 142
P+E+ ++ R + + + GKK+ + P
Sbjct: 66 TPEEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQAKTPTHE 125
Query: 143 INYRFWPNNP--PSYRAVNEEYAKYMREVVDKLFT-YXXXXXXXXXXXXKEAAGGDDIEY 199
+N WP+ P ++ E+Y + + L Y + D +
Sbjct: 126 VN--VWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDTLAS 183
Query: 200 MLKINYYPPCPRPDLALGVVA---------HTDLSALTVLVPNEVPGLQVFKDDRWIDAK 250
++ I Y P P+ A+ A H D+S +TVL + V LQV + D +
Sbjct: 184 VVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETAAGYQDIE 243
Query: 251 YIPNALIIHIGDQIEILSNGKYKAVLHRTT-VNKDKTRMSWPVFLEPPADTVVGPL---- 305
+I+ G + L+N YKA +HR VN + R S P F+ D+V+ P
Sbjct: 244 ADDTGYLINCGSYMAHLTNNYYKAPIHRVKWVNAE--RQSLPFFVNLGYDSVIDPFDPRE 301
Query: 306 PQLVDDENPPKY 317
P D P Y
Sbjct: 302 PNGKSDREPLSY 313
>pdb|2V71|A Chain A, Coiled-Coil Region Of Nudel
pdb|2V71|B Chain B, Coiled-Coil Region Of Nudel
Length = 189
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 110 KDVQGYGTKLQKEVEGKKSWVDHLFHRVWPPSSINYRFWPNNPPSYRAVNEEYAKYMREV 169
+D+Q +L+ EVE K ++H + + + S+ ++ RA+ E+ KY+RE+
Sbjct: 59 RDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSV----LEDDLSQTRAIKEQLHKYVREL 114
>pdb|1B0P|A Chain A, Crystal Structure Of Pyruvate-ferredoxin Oxidoreductase
From Desulfovibrio Africanus
pdb|1B0P|B Chain B, Crystal Structure Of Pyruvate-ferredoxin Oxidoreductase
From Desulfovibrio Africanus
pdb|2PDA|A Chain A, Crystal Structure Of The Complex Between
Pyruvate-Ferredoxin Oxidoreductase From Desulfovibrio
Africanus And Pyruvate.
pdb|2PDA|B Chain B, Crystal Structure Of The Complex Between
Pyruvate-Ferredoxin Oxidoreductase From Desulfovibrio
Africanus And Pyruvate.
pdb|1KEK|A Chain A, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase
pdb|1KEK|B Chain B, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase
pdb|2C3M|A Chain A, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase
From Desulfovibrio Africanus
pdb|2C3M|B Chain B, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase
From Desulfovibrio Africanus
pdb|2C3O|A Chain A, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
Africanus
pdb|2C3O|B Chain B, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
Africanus
pdb|2C3P|A Chain A, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
Africanus
pdb|2C3P|B Chain B, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
Africanus
pdb|2C3U|A Chain A, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase
From Desulfovibrio Africanus, Oxygen Inhibited Form
pdb|2C3U|B Chain B, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase
From Desulfovibrio Africanus, Oxygen Inhibited Form
pdb|2C3Y|A Chain A, Crystal Structure Of The Radical Form Of
Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
Africanus
pdb|2C3Y|B Chain B, Crystal Structure Of The Radical Form Of
Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
Africanus
pdb|2C42|A Chain A, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase
From Desulfovibrio Africanus
pdb|2C42|B Chain B, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase
From Desulfovibrio Africanus
pdb|2UZA|A Chain A, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
Africanus
pdb|2UZA|B Chain B, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
Africanus
Length = 1231
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 39/102 (38%), Gaps = 3/102 (2%)
Query: 70 FQVTNHGIPSDLIGKLQAVGKEFFELPQEEKEVYSRPADAKDVQGYGTKLQKEVEGKKSW 129
F +P L G+ KEF P K VY + AK + ++ +V G
Sbjct: 347 FVERGEAMPKILAGRYGLGSKEF--SPAMVKSVYDNMSGAKKNH-FTVGIEDDVTGTSLP 403
Query: 130 VDHLFHRVWPPSSINYRFWPNNPPSYRAVNEEYAKYMREVVD 171
VD+ F P +I +FW N++ K + + D
Sbjct: 404 VDNAFADTTPKGTIQCQFWGLGADGTVGANKQAIKIIGDNTD 445
>pdb|1X3B|A Chain A, Solution Structure Of The Fas1 Domain Of Human
Transforming Growth Factor-Beta Induced Protein Ig-H3
Length = 146
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 248 DAKYIPNALIIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSW 290
DAK + N L HIGD EIL +G A++ ++ DK +S
Sbjct: 67 DAKELANILKYHIGD--EILVSGGIGALVRLKSLQGDKLEVSL 107
>pdb|2VXP|A Chain A, The Fourth Fas1 Domain Structure Of Human Bigh3
pdb|2VXP|B Chain B, The Fourth Fas1 Domain Structure Of Human Bigh3
Length = 132
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 248 DAKYIPNALIIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSW 290
DAK + N L HIGD EIL +G A++ ++ DK +S
Sbjct: 60 DAKELANILKYHIGD--EILVSGGIGALVRLKSLQGDKLEVSL 100
>pdb|2V66|B Chain B, Crystal Structure Of The Coiled-Coil Domain Of Ndel1 (A.A.
58 To 169)c
pdb|2V66|C Chain C, Crystal Structure Of The Coiled-Coil Domain Of Ndel1 (A.A.
58 To 169)c
pdb|2V66|D Chain D, Crystal Structure Of The Coiled-Coil Domain Of Ndel1 (A.A.
58 To 169)c
pdb|2V66|E Chain E, Crystal Structure Of The Coiled-Coil Domain Of Ndel1 (A.A.
58 To 169)c
Length = 111
Score = 28.5 bits (62), Expect = 6.0, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 110 KDVQGYGTKLQKEVEGKKSWVDHLFHRVWPPSSINYRFWPNNPPSYRAVNEEYAKYMREV 169
+D+Q +L+ EVE K ++H + + + S+ ++ RA+ E+ KY+RE+
Sbjct: 6 RDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSV----LEDDLSQTRAIKEQLHKYVREL 61
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.136 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,868,508
Number of Sequences: 62578
Number of extensions: 466533
Number of successful extensions: 1149
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1123
Number of HSP's gapped (non-prelim): 14
length of query: 335
length of database: 14,973,337
effective HSP length: 99
effective length of query: 236
effective length of database: 8,778,115
effective search space: 2071635140
effective search space used: 2071635140
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)