BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019858
         (335 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3U44|A Chain A, Crystal Structure Of Addab-Dna Complex
 pdb|3U4Q|A Chain A, Structure Of Addab-Dna Complex At 2.8 Angstroms
          Length = 1232

 Score = 29.6 bits (65), Expect = 2.6,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 207 QNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIFELVMSMDGTRYE 256
           +NG +   E L+ DY  RS  + +K++  ++   E + +LV+S  G R+E
Sbjct: 309 RNGAKKLLEKLKTDYFTRSPEQHLKSLAEMKPVIETLVQLVISY-GKRFE 357


>pdb|3MQB|A Chain A, Crystal Structure Of Ectodomain Of Bst-2TETHERINCD317 (C2)
 pdb|3MQB|B Chain B, Crystal Structure Of Ectodomain Of Bst-2TETHERINCD317 (C2)
 pdb|3MQB|E Chain E, Crystal Structure Of Ectodomain Of Bst-2TETHERINCD317 (C2)
 pdb|3MQB|F Chain F, Crystal Structure Of Ectodomain Of Bst-2TETHERINCD317 (C2)
          Length = 121

 Score = 28.9 bits (63), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 11/82 (13%)

Query: 206 CQNGLRIFEELLEVDYL-PRSCSRAMKAVGVVEA---SCE-EIFELVMSMDGTRYEWDCS 260
           C++GLR   E   V +L  +  + A K    VEA   +C   +  L+ S+D  +      
Sbjct: 13  CRDGLRAVMECRNVTHLLQQELTEAQKGFQDVEAQAATCNHTVMALMASLDAEKA----- 67

Query: 261 FQYGSLVEEVDGHTAILYHRLQ 282
            Q    VEE++G    L H+LQ
Sbjct: 68  -QGQKKVEELEGEITTLNHKLQ 88


>pdb|2XG7|A Chain A, Crystal Structure Of Bst2-Tetherin Ectodomain Expressed In
           Hek293t Cells
 pdb|2XG7|C Chain C, Crystal Structure Of Bst2-Tetherin Ectodomain Expressed In
           Hek293t Cells
          Length = 103

 Score = 28.5 bits (62), Expect = 5.7,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 11/82 (13%)

Query: 206 CQNGLRIFEELLEVDYL-PRSCSRAMKAVGVVEA---SCEE-IFELVMSMDGTRYEWDCS 260
           C++GLR   E   V +L  +  + A K    VEA   +C   +  L+ S+D  +      
Sbjct: 3   CRDGLRAVMECRNVTHLLQQELTEAQKGFQDVEAQAATCNHTVMALMASLDAEKA----- 57

Query: 261 FQYGSLVEEVDGHTAILYHRLQ 282
            Q    VEE++G    L H+LQ
Sbjct: 58  -QGQKKVEELEGEITTLNHKLQ 78


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.136    0.427 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,789,505
Number of Sequences: 62578
Number of extensions: 452423
Number of successful extensions: 945
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 945
Number of HSP's gapped (non-prelim): 7
length of query: 335
length of database: 14,973,337
effective HSP length: 99
effective length of query: 236
effective length of database: 8,778,115
effective search space: 2071635140
effective search space used: 2071635140
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)