Query 019858
Match_columns 335
No_of_seqs 91 out of 93
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 05:06:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019858.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019858hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00188 enhanced disease resi 100.0 1E-100 2E-105 792.9 29.7 323 2-324 1-323 (719)
2 cd08904 START_STARD6-like Lipi 99.9 3.7E-21 7.9E-26 176.1 12.8 119 198-325 21-141 (204)
3 cd08868 START_STARD1_3_like Ch 99.8 3.9E-20 8.5E-25 166.5 13.6 123 195-326 20-144 (208)
4 cd08903 START_STARD5-like Lipi 99.8 3E-20 6.5E-25 168.8 12.7 121 198-325 21-143 (208)
5 cd08872 START_STARD11-like Cer 99.8 7.3E-20 1.6E-24 170.2 12.4 119 199-326 26-154 (235)
6 cd08909 START_STARD13-like C-t 99.8 1E-19 2.2E-24 167.1 11.4 91 228-324 52-143 (205)
7 cd08867 START_STARD4_5_6-like 99.8 2.9E-19 6.4E-24 160.6 13.0 121 199-326 22-144 (206)
8 cd08869 START_RhoGAP C-termina 99.8 2.4E-18 5.1E-23 155.1 12.5 117 197-323 17-135 (197)
9 cd08911 START_STARD7-like Lipi 99.8 5.1E-18 1.1E-22 154.0 12.7 123 197-328 19-144 (207)
10 cd08871 START_STARD10-like Lip 99.8 5.8E-18 1.2E-22 153.9 12.4 118 198-325 22-140 (222)
11 cd08870 START_STARD2_7-like Li 99.7 1E-17 2.2E-22 151.6 11.5 117 199-324 22-144 (209)
12 cd08906 START_STARD3-like Chol 99.7 1.5E-17 3.2E-22 151.9 12.2 120 198-326 24-145 (209)
13 cd00177 START Lipid-binding ST 99.7 3.6E-17 7.8E-22 140.0 13.7 117 199-324 15-131 (193)
14 cd08873 START_STARD14_15-like 99.7 3.1E-17 6.8E-22 153.6 13.8 147 169-326 23-173 (235)
15 cd08914 START_STARD15-like Lip 99.7 2.2E-17 4.8E-22 154.7 12.3 143 172-325 27-173 (236)
16 smart00234 START in StAR and p 99.7 6.7E-17 1.5E-21 142.8 13.0 120 198-324 18-139 (206)
17 PF01852 START: START domain; 99.7 3.6E-16 7.7E-21 137.7 14.8 122 196-324 16-138 (206)
18 cd08913 START_STARD14-like Lip 99.7 4.5E-16 9.8E-21 146.0 12.6 144 172-325 30-177 (240)
19 cd08874 START_STARD9-like C-te 99.7 6E-16 1.3E-20 141.8 12.1 121 196-325 19-139 (205)
20 cd08876 START_1 Uncharacterize 99.6 1.9E-15 4.2E-20 133.0 12.2 118 193-319 10-129 (195)
21 cd08905 START_STARD1-like Chol 99.6 1.2E-15 2.7E-20 138.8 10.2 120 198-326 24-145 (209)
22 cd08910 START_STARD2-like Lipi 99.6 1.1E-15 2.3E-20 139.2 9.7 118 198-326 24-145 (207)
23 cd08908 START_STARD12-like C-t 99.6 7.2E-15 1.6E-19 135.0 10.4 95 227-327 51-146 (204)
24 cd08907 START_STARD8-like C-te 99.6 8.1E-15 1.8E-19 135.1 9.8 116 198-324 26-143 (205)
25 cd01251 PH_centaurin_alpha Cen 99.6 1.8E-14 3.9E-19 118.2 10.6 99 7-112 1-102 (103)
26 cd01246 PH_oxysterol_bp Oxyste 99.5 6.6E-14 1.4E-18 108.1 10.5 91 7-109 1-91 (91)
27 cd01260 PH_CNK Connector enhan 99.5 1.3E-13 2.7E-18 110.0 10.7 95 6-109 1-96 (96)
28 cd08902 START_STARD4-like Lipi 99.5 7.2E-14 1.6E-18 128.6 10.2 119 196-323 20-139 (202)
29 PF00169 PH: PH domain; Inter 99.5 1.2E-12 2.5E-17 100.3 11.7 99 6-110 2-103 (104)
30 cd01252 PH_cytohesin Cytohesin 99.4 3E-12 6.4E-17 107.5 11.5 98 6-113 1-116 (125)
31 cd01235 PH_SETbf Set binding f 99.4 3.8E-12 8.2E-17 101.4 10.9 96 7-110 1-101 (101)
32 cd01238 PH_Tec Tec pleckstrin 99.4 2.5E-12 5.5E-17 106.0 10.1 99 7-108 2-105 (106)
33 cd01233 Unc104 Unc-104 pleckst 99.4 4.1E-12 8.9E-17 103.3 10.4 95 5-109 2-97 (100)
34 cd01250 PH_centaurin Centaurin 99.4 5.2E-12 1.1E-16 98.0 10.1 94 7-109 1-94 (94)
35 smart00233 PH Pleckstrin homol 99.4 1.6E-11 3.4E-16 91.7 12.1 99 6-110 2-101 (102)
36 cd01247 PH_GPBP Goodpasture an 99.4 7.7E-12 1.7E-16 100.9 10.9 90 7-108 1-90 (91)
37 KOG2761 START domain-containin 99.4 2.7E-12 5.9E-17 119.3 9.4 123 195-326 25-149 (219)
38 cd08877 START_2 Uncharacterize 99.3 3.4E-12 7.3E-17 115.7 8.7 113 198-320 21-136 (215)
39 cd01257 PH_IRS Insulin recepto 99.3 1.3E-11 2.8E-16 102.2 11.4 90 5-108 2-100 (101)
40 cd01265 PH_PARIS-1 PARIS-1 ple 99.3 1.2E-11 2.6E-16 100.1 9.9 91 7-109 1-93 (95)
41 cd01266 PH_Gab Gab (Grb2-assoc 99.3 3.2E-11 7E-16 99.2 10.3 96 8-109 2-107 (108)
42 cd01264 PH_melted Melted pleck 99.2 5.8E-11 1.3E-15 98.7 10.4 98 7-109 2-100 (101)
43 cd01236 PH_outspread Outspread 99.2 5.4E-11 1.2E-15 99.1 10.0 94 7-107 1-101 (104)
44 cd01241 PH_Akt Akt pleckstrin 99.2 7E-11 1.5E-15 96.7 9.9 94 5-109 1-101 (102)
45 cd00900 PH-like Pleckstrin hom 99.1 9.3E-10 2E-14 82.2 10.2 98 7-109 1-99 (99)
46 cd01254 PH_PLD Phospholipase D 99.1 1E-09 2.2E-14 92.8 10.1 98 7-109 1-121 (121)
47 cd01219 PH_FGD FGD (faciogenit 99.0 2.3E-09 5E-14 87.6 10.9 96 6-112 3-101 (101)
48 cd01253 PH_beta_spectrin Beta- 99.0 2.6E-09 5.7E-14 86.3 9.7 96 7-109 1-104 (104)
49 cd00821 PH Pleckstrin homology 99.0 3.7E-09 7.9E-14 78.3 8.6 94 7-109 1-96 (96)
50 cd01245 PH_RasGAP_CG5898 RAS G 99.0 2.1E-09 4.5E-14 88.9 7.9 92 8-108 2-97 (98)
51 cd01263 PH_anillin Anillin Ple 99.0 2.9E-09 6.3E-14 91.2 9.1 103 5-109 1-122 (122)
52 KOG0930 Guanine nucleotide exc 98.9 4.8E-09 1E-13 101.5 8.7 99 4-111 259-376 (395)
53 cd01220 PH_CDEP Chondrocyte-de 98.9 1.9E-08 4.1E-13 82.9 10.8 94 6-111 3-98 (99)
54 cd01237 Unc112 Unc-112 pleckst 98.9 1.3E-08 2.8E-13 85.7 9.6 91 15-109 11-102 (106)
55 PF15413 PH_11: Pleckstrin hom 98.9 1.1E-08 2.5E-13 85.3 8.9 94 7-109 1-112 (112)
56 cd01256 PH_dynamin Dynamin ple 98.8 2E-08 4.3E-13 84.2 9.0 96 7-109 3-104 (110)
57 cd01244 PH_RasGAP_CG9209 RAS_G 98.8 3.5E-08 7.6E-13 81.4 9.7 83 18-109 16-98 (98)
58 PF15409 PH_8: Pleckstrin homo 98.7 3.8E-08 8.3E-13 80.5 6.8 83 9-109 1-88 (89)
59 cd01230 PH_EFA6 EFA6 Pleckstri 98.4 3.1E-06 6.7E-11 72.1 10.7 96 7-109 2-110 (117)
60 cd08875 START_ArGLABRA2_like C 98.2 3.5E-06 7.5E-11 79.4 7.8 89 228-319 60-157 (229)
61 PF15410 PH_9: Pleckstrin homo 97.9 0.00012 2.6E-09 61.6 9.5 97 7-109 2-117 (119)
62 PF12814 Mcp5_PH: Meiotic cell 97.7 0.00054 1.2E-08 58.2 11.3 99 8-110 12-121 (123)
63 cd01239 PH_PKD Protein kinase 97.6 0.00042 9.1E-09 59.6 8.5 95 7-109 2-117 (117)
64 KOG0690 Serine/threonine prote 97.5 8E-05 1.7E-09 74.6 4.2 97 5-111 15-117 (516)
65 cd01234 PH_CADPS CADPS (Ca2+-d 97.4 0.00032 6.9E-09 59.8 6.2 95 6-112 3-112 (117)
66 cd01224 PH_Collybistin Collybi 97.4 0.0033 7.1E-08 53.5 12.3 98 7-108 4-105 (109)
67 cd01218 PH_phafin2 Phafin2 Pl 97.3 0.0045 9.8E-08 51.9 11.0 97 6-114 5-102 (104)
68 cd01243 PH_MRCK MRCK (myotonic 97.2 0.0041 8.9E-08 53.9 10.8 102 5-109 2-118 (122)
69 KOG1739 Serine/threonine prote 97.2 0.00013 2.9E-09 75.2 1.2 125 195-326 399-530 (611)
70 cd01242 PH_ROK Rok (Rho- assoc 97.1 0.0063 1.4E-07 52.1 10.5 101 6-110 1-110 (112)
71 PF15408 PH_7: Pleckstrin homo 97.1 0.00025 5.5E-09 58.7 1.5 93 8-108 1-95 (104)
72 cd01261 PH_SOS Son of Sevenles 96.5 0.048 1E-06 46.4 11.2 98 6-111 5-110 (112)
73 PLN02866 phospholipase D 96.5 0.022 4.8E-07 63.8 11.5 118 6-131 183-327 (1068)
74 PTZ00267 NIMA-related protein 96.5 0.0073 1.6E-07 60.7 7.2 98 4-111 376-477 (478)
75 cd01221 PH_ephexin Ephexin Ple 96.2 0.05 1.1E-06 47.3 10.0 101 6-107 4-119 (125)
76 PF14593 PH_3: PH domain; PDB: 96.1 0.078 1.7E-06 44.6 10.3 89 5-113 13-102 (104)
77 cd01259 PH_Apbb1ip Apbb1ip (Am 96.1 0.022 4.7E-07 49.0 7.0 100 6-109 1-107 (114)
78 KOG3640 Actin binding protein 95.9 0.017 3.6E-07 63.9 6.8 111 2-114 987-1110(1116)
79 cd08864 SRPBCC_DUF3074 DUF3074 95.8 0.024 5.1E-07 52.6 6.6 65 255-322 66-138 (208)
80 cd01258 PH_syntrophin Syntroph 95.8 0.034 7.4E-07 47.2 6.8 99 8-108 2-107 (108)
81 cd01249 PH_oligophrenin Oligop 95.5 0.16 3.4E-06 43.1 9.7 93 7-107 1-102 (104)
82 KOG1090 Predicted dual-specifi 94.3 0.021 4.5E-07 63.8 1.8 94 7-110 1636-1731(1732)
83 cd01222 PH_clg Clg (common-sit 94.3 0.49 1.1E-05 39.3 9.5 91 6-110 5-95 (97)
84 cd01223 PH_Vav Vav pleckstrin 93.7 0.42 9.1E-06 41.3 8.2 86 24-110 20-111 (116)
85 cd01225 PH_Cool_Pix Cool (clon 92.3 0.53 1.2E-05 40.4 6.8 79 20-109 24-108 (111)
86 KOG3751 Growth factor receptor 92.0 0.45 9.7E-06 50.4 7.2 102 3-109 315-423 (622)
87 KOG2059 Ras GTPase-activating 91.0 0.28 6.1E-06 53.3 4.7 94 7-109 567-663 (800)
88 PTZ00283 serine/threonine prot 90.8 0.62 1.3E-05 47.6 6.8 40 70-111 451-490 (496)
89 KOG4424 Predicted Rho/Rac guan 89.9 0.81 1.8E-05 48.8 6.8 96 7-113 274-372 (623)
90 cd01232 PH_TRIO Trio pleckstri 89.3 4.2 9.1E-05 34.7 9.6 91 17-112 21-114 (114)
91 KOG1117 Rho- and Arf-GTPase ac 88.6 1.6 3.5E-05 48.8 8.1 97 9-109 496-600 (1186)
92 cd07819 SRPBCC_2 Ligand-bindin 88.1 1.3 2.9E-05 35.7 5.6 52 229-281 3-55 (140)
93 KOG1117 Rho- and Arf-GTPase ac 86.6 0.82 1.8E-05 51.0 4.5 79 22-109 1049-1130(1186)
94 cd08860 TcmN_ARO-CYC_like N-te 86.1 1.6 3.5E-05 37.8 5.3 42 233-276 6-47 (146)
95 cd08866 SRPBCC_11 Ligand-bindi 85.9 1.3 2.7E-05 36.6 4.4 42 231-273 2-43 (144)
96 cd07813 COQ10p_like Coenzyme Q 85.8 2.9 6.2E-05 34.5 6.5 86 232-328 3-89 (138)
97 PF10604 Polyketide_cyc2: Poly 79.9 8.3 0.00018 30.8 6.9 38 230-268 4-41 (139)
98 PF11274 DUF3074: Protein of u 76.9 11 0.00023 34.5 7.4 69 256-327 33-120 (184)
99 PF03364 Polyketide_cyc: Polyk 76.0 9.9 0.00021 30.7 6.3 40 236-276 1-40 (130)
100 cd01248 PH_PLC Phospholipase C 75.5 9.8 0.00021 31.5 6.2 36 73-108 78-114 (115)
101 cd05018 CoxG Carbon monoxide d 75.4 7.8 0.00017 31.4 5.5 37 230-267 3-39 (144)
102 KOG0521 Putative GTPase activa 74.5 2.7 5.7E-05 46.5 3.3 98 7-115 276-373 (785)
103 cd01227 PH_Dbs Dbs (DBL's big 74.5 45 0.00098 29.4 10.3 90 26-118 32-123 (133)
104 PRK10724 hypothetical protein; 72.3 4.4 9.6E-05 35.9 3.6 46 227-273 14-59 (158)
105 KOG1737 Oxysterol-binding prot 71.8 2.6 5.7E-05 46.7 2.4 38 6-46 78-115 (799)
106 cd07821 PYR_PYL_RCAR_like Pyra 71.8 8.9 0.00019 30.6 5.0 40 229-269 2-41 (140)
107 cd07812 SRPBCC START/RHO_alpha 71.1 5.8 0.00013 30.2 3.6 38 231-269 2-39 (141)
108 cd08861 OtcD1_ARO-CYC_like N-t 70.4 6 0.00013 32.4 3.8 35 233-269 4-38 (142)
109 KOG4236 Serine/threonine prote 70.1 5.8 0.00013 43.0 4.4 98 4-109 412-522 (888)
110 cd01240 PH_beta-ARK Beta adren 68.7 9.8 0.00021 33.0 4.7 103 5-117 3-105 (116)
111 cd07817 SRPBCC_8 Ligand-bindin 66.3 5.7 0.00012 32.1 2.8 36 231-267 3-38 (139)
112 KOG3549 Syntrophins (type gamm 64.7 7.2 0.00016 40.0 3.6 102 4-110 280-386 (505)
113 cd08862 SRPBCC_Smu440-like Lig 64.1 10 0.00022 30.5 3.9 38 230-268 3-40 (138)
114 PF15405 PH_5: Pleckstrin homo 62.3 16 0.00035 31.8 5.0 39 71-109 96-134 (135)
115 KOG4047 Docking protein 1 (p62 59.6 8.5 0.00018 40.0 3.2 101 2-109 5-116 (429)
116 KOG0248 Cytoplasmic protein Ma 58.7 11 0.00024 41.6 4.0 100 7-119 251-350 (936)
117 cd07824 SRPBCC_6 Ligand-bindin 57.4 12 0.00025 31.5 3.2 37 231-268 4-40 (146)
118 KOG3543 Ca2+-dependent activat 56.3 5.9 0.00013 43.4 1.5 94 7-113 466-568 (1218)
119 cd07825 SRPBCC_7 Ligand-bindin 55.6 13 0.00029 30.4 3.2 28 231-259 3-30 (144)
120 KOG1739 Serine/threonine prote 54.9 11 0.00024 40.0 3.2 85 7-109 20-115 (611)
121 cd08865 SRPBCC_10 Ligand-bindi 54.7 14 0.0003 29.4 3.1 35 232-267 3-37 (140)
122 cd07820 SRPBCC_3 Ligand-bindin 53.8 27 0.00058 29.0 4.8 51 232-283 3-56 (137)
123 cd07818 SRPBCC_1 Ligand-bindin 53.4 18 0.00039 30.0 3.7 29 230-259 4-32 (150)
124 cd08893 SRPBCC_CalC_Aha1-like_ 53.3 1.2E+02 0.0025 24.3 9.9 30 230-260 2-31 (136)
125 cd01262 PH_PDK1 3-Phosphoinosi 51.8 90 0.002 26.0 7.4 83 7-109 3-87 (89)
126 cd07822 SRPBCC_4 Ligand-bindin 51.6 20 0.00044 28.5 3.6 28 231-259 3-30 (141)
127 KOG1451 Oligophrenin-1 and rel 50.3 39 0.00085 37.0 6.3 100 3-109 263-366 (812)
128 KOG1264 Phospholipase C [Lipid 47.3 22 0.00048 40.2 4.1 38 72-109 872-909 (1267)
129 PF06240 COXG: Carbon monoxide 45.9 14 0.00031 31.3 2.0 70 235-313 4-73 (140)
130 cd01226 PH_exo84 Exocyst compl 44.9 95 0.0021 26.2 6.7 92 6-110 3-98 (100)
131 KOG1738 Membrane-associated gu 43.3 6.8 0.00015 42.4 -0.5 38 6-43 563-600 (638)
132 KOG3531 Rho guanine nucleotide 43.1 5.9 0.00013 44.4 -1.0 92 7-109 926-1018(1036)
133 cd01228 PH_BCR-related BCR (br 42.9 28 0.00061 29.4 3.2 31 77-109 63-93 (96)
134 cd07823 SRPBCC_5 Ligand-bindin 42.4 26 0.00057 29.4 3.0 35 233-271 4-38 (146)
135 KOG3723 PH domain protein Melt 42.2 12 0.00026 40.6 1.2 96 7-110 737-836 (851)
136 cd00837 EVH1 EVH1 (Enabled, Va 40.6 2.1E+02 0.0045 23.6 8.5 24 86-109 80-103 (104)
137 PF15406 PH_6: Pleckstrin homo 40.2 81 0.0018 27.4 5.6 54 43-107 57-110 (112)
138 cd01207 Ena-Vasp Enabled-VASP- 39.8 69 0.0015 27.5 5.2 30 84-113 81-110 (111)
139 PF14784 ECIST_Cterm: C-termin 36.5 1E+02 0.0022 27.0 5.8 19 91-109 94-112 (126)
140 COG3832 Uncharacterized conser 36.4 67 0.0014 27.8 4.7 32 227-259 7-38 (149)
141 TIGR02837 spore_II_R stage II 32.7 83 0.0018 29.0 4.8 31 92-122 74-104 (168)
142 cd07814 SRPBCC_CalC_Aha1-like 31.5 37 0.00081 27.2 2.2 29 230-259 2-30 (139)
143 cd08898 SRPBCC_CalC_Aha1-like_ 31.4 45 0.00096 27.2 2.7 30 230-260 3-32 (145)
144 PTZ00220 Activator of HSP-90 A 31.3 43 0.00092 28.3 2.6 21 236-257 1-21 (132)
145 cd08899 SRPBCC_CalC_Aha1-like_ 31.0 29 0.00062 29.8 1.5 31 228-259 11-41 (157)
146 cd08901 SRPBCC_CalC_Aha1-like_ 29.9 39 0.00085 28.2 2.1 27 230-257 2-28 (136)
147 PF03374 ANT: Phage antirepres 29.7 37 0.00081 27.6 1.9 53 7-69 47-101 (111)
148 PF08327 AHSA1: Activator of H 29.5 2.8E+02 0.006 21.7 7.5 20 237-257 1-20 (124)
149 PF09551 Spore_II_R: Stage II 29.2 1.1E+02 0.0023 27.1 4.7 31 92-122 39-69 (130)
150 cd01231 PH_Lnk LNK-family Plec 28.9 86 0.0019 27.0 4.0 38 67-108 69-106 (107)
151 KOG3523 Putative guanine nucle 28.7 88 0.0019 34.3 4.9 34 74-107 557-591 (695)
152 PF08350 DUF1724: Domain of un 28.6 1.3E+02 0.0028 23.1 4.6 33 73-106 21-53 (64)
153 KOG2996 Rho guanine nucleotide 26.0 1.8E+02 0.0038 32.3 6.5 104 24-129 422-531 (865)
154 cd08891 SRPBCC_CalC Ligand-bin 25.4 71 0.0015 26.9 3.0 20 230-249 2-21 (149)
155 cd07816 Bet_v1-like Ligand-bin 25.2 2E+02 0.0044 24.6 5.8 54 230-283 3-57 (148)
156 KOG0976 Rho/Rac1-interacting s 25.1 31 0.00066 39.0 0.8 103 6-109 813-918 (1265)
157 cd08894 SRPBCC_CalC_Aha1-like_ 24.5 48 0.0011 27.6 1.8 26 231-257 3-28 (139)
158 KOG0689 Guanine nucleotide exc 24.4 56 0.0012 34.3 2.5 88 26-116 278-366 (448)
159 PF15404 PH_4: Pleckstrin homo 23.9 4.3E+02 0.0092 24.6 7.9 21 88-108 163-183 (185)
160 cd08897 SRPBCC_CalC_Aha1-like_ 21.8 62 0.0013 26.7 1.9 26 231-257 3-28 (133)
161 PF02829 3H: 3H domain; Inter 20.7 90 0.002 26.1 2.6 44 53-109 16-59 (98)
162 KOG0592 3-phosphoinositide-dep 20.2 1.8E+02 0.0038 31.8 5.1 72 21-109 462-536 (604)
163 KOG3727 Mitogen inducible gene 20.1 1.4E+02 0.003 32.7 4.4 69 38-109 389-457 (664)
No 1
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=100.00 E-value=9.9e-101 Score=792.93 Aligned_cols=323 Identities=89% Similarity=1.421 Sum_probs=314.1
Q ss_pred CCCCceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEe
Q 019858 2 SSKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYN 81 (335)
Q Consensus 2 ~~~~~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn 81 (335)
++.+.||||||++|+||||++|||+|||||+||+|+|||++|.++++|||+|+||+||||||+|||+|||++||||+|||
T Consensus 1 ~~~~~~eGW~y~~g~~kig~~~~~~Ry~vl~~~~~~~yK~~P~~~~~pirs~~id~~~rVed~Gr~~~~g~~~yvl~~Yn 80 (719)
T PLN00188 1 ASKVVYEGWMVRYGRRKIGRSYIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYN 80 (719)
T ss_pred CCcceEeeEEEEEcccccccccceeEEEEEecchhhhcccCCccccccceeeccCCCceEeecCceEEcCceEEEEEEec
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcceEEEeecCHHHHHHHHHHHHHHHhhhhhhhccCCCccccccccccCCCCCCCCCCccccccccccccccccccc
Q 019858 82 KKEKYHRITMAAFNIQEALIWKEKIELVIDQHQESQVSNGNKYVSFEYKSGMDNGRNGSSSDHESQFSAQEDEDDGHLNL 161 (335)
Q Consensus 82 ~~~~~~~~~laa~s~eea~~W~~a~~~Ai~q~~~~~~~~~~~~~s~~~~~~~~~~~~~s~s~~~s~~~~~~~~~~~~~~l 161 (335)
+++|++|+||||.|+|||++||+||++||+|+++.....+++|++++++..+.+|++.++++++++++++...++.++.+
T Consensus 81 ~~~~~~~~~~~a~~~eea~~W~~a~~~a~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 160 (719)
T PLN00188 81 KKEKYHRITMAAFNIQEALIWKEKIESVIDQHQDSQVPNGNKYASFEYKSGMDNGRTASSSDHESQFSAQEDEEDTHRDL 160 (719)
T ss_pred CCCccccEEEecCCHHHHHHHHHHHHHHHhhhccccccccccccceeeccccccccccccccccccccccccccccCccc
Confidence 99999999999999999999999999999999999888888999999999899999999999999988888888889999
Q ss_pred eeeeeecCCCCCCcccCcccccCccccCCCCccccccCCcEEEEeecCeEEEEEecccCCCCccCccceEEeeeeecCHH
Q 019858 162 MRRTTIGNGPPDLVHDWTRELDSDLSNQNINNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCE 241 (335)
Q Consensus 162 ~rr~tig~gp~~~~~dwt~~~~~~~~n~~~~~dv~~~~~W~l~~~~nGlrif~e~~~~~~~~~~~~~~~kavgvV~aspe 241 (335)
.||+|||||||.++.|||...+.+.+|+++++||++.++|+||+|+||||||+|+.+++|++++++++|||||||+||||
T Consensus 161 ~r~~tig~gp~~s~~~~t~~~~~~~~~~~~~~d~~~~~~Wr~~~c~NGlRiF~e~~~~~~~~~~~~~~mKavGVV~aspE 240 (719)
T PLN00188 161 LRRTTIGNGPPDSVLDWTKEFDSELSNQNSNNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEATCE 240 (719)
T ss_pred ceeeeccCCCcchhcccccccCccccccCCCccccccCCeEEEEeeccceeehhhhccccccccCCceeEEEEEecCCHH
Confidence 99999999999999999999999899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCCcccccceeeeeeEEEEEeCcccEEEEEEeeCcccCcccCceeEEEEeeEecCCCcEEEEEeeeechhh
Q 019858 242 EIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYGSMRTVVHNQDM 321 (335)
Q Consensus 242 ~IFe~lm~~d~~R~eWD~~~~~~~vVE~iD~HtdIvy~~~~p~wlp~~~~~RDlv~~RyWrR~~DGsYvIl~~Sv~H~~~ 321 (335)
+||++||+++.+|+|||+++++++|||+||+||||+|++++|.|+|++++|||||++|||+|++||+|+|+++||+||+|
T Consensus 241 ~Ifd~Vm~~~~~R~eWD~~~~~~~vIE~ID~htdI~Y~~~~~~~~~~~ispRDFV~~Rywrr~eDGsYvil~~Sv~Hp~c 320 (719)
T PLN00188 241 EIFELVMSMDGTRFEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYVVLFRSREHENC 320 (719)
T ss_pred HHHHHHhccCcccccchhcccceEEEEEecCCeEEEEEEeccccccCccCcceeEEEEEEEEcCCCcEEEeeeeeecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhh
Q 019858 322 YEL 324 (335)
Q Consensus 322 ~~~ 324 (335)
|-.
T Consensus 321 PP~ 323 (719)
T PLN00188 321 GPQ 323 (719)
T ss_pred CCC
Confidence 743
No 2
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=99.86 E-value=3.7e-21 Score=176.05 Aligned_cols=119 Identities=15% Similarity=0.226 Sum_probs=106.3
Q ss_pred cCCcEEEEeecCeEEEEEec-ccCCCCccCccceEEeeeeecCHHHHHHHhhccCCCcccccceeeeeeEEEEEeCcccE
Q 019858 198 RKHWRLLQCQNGLRIFEELL-EVDYLPRSCSRAMKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAI 276 (335)
Q Consensus 198 ~~~W~l~~~~nGlrif~e~~-~~~~~~~~~~~~~kavgvV~aspe~IFe~lm~~d~~R~eWD~~~~~~~vVE~iD~HtdI 276 (335)
.+.|++....+|+.|+.... + ..+.++|+.|+|+++|++||+++.++. .|.+||.++.+.++||+||+||+|
T Consensus 21 ~~gWk~~k~~~~~~v~~k~~~~------~~gkl~k~egvi~~~~e~v~~~l~~~e-~r~~Wd~~~~~~~iie~Id~~T~I 93 (204)
T cd08904 21 TSGWKVVKTSKKITVSWKPSRK------YHGNLYRVEGIIPESPAKLIQFMYQPE-HRIKWDKSLQVYKMLQRIDSDTFI 93 (204)
T ss_pred ccCCeEEecCCceEEEEEEcCC------CCceEEEEEEEecCCHHHHHHHHhccc-hhhhhcccccceeeEEEeCCCcEE
Confidence 37899999999999999864 3 235799999999999999999988754 799999999999999999999999
Q ss_pred EEEEEeeCccc-CcccCceeEEEEeeEecCCCcEEEEEeeeechhhhhhc
Q 019858 277 LYHRLQLDWFP-MFVWPRDLCYVRYWRRNDDGSYGSMRTVVHNQDMYELT 325 (335)
Q Consensus 277 vy~~~~p~wlp-~~~~~RDlv~~RyWrR~~DGsYvIl~~Sv~H~~~~~~t 325 (335)
+|.+.++ +| ..++|||||.+|+|+|.++|+|+|+..||+||+||...
T Consensus 94 ~~~~~~~--~~~~~vspRDfV~vr~~~r~~~~~~ii~~~sv~Hp~~Pp~~ 141 (204)
T cd08904 94 CHTITQS--FAMGSISPRDFVDLVHIKRYEGNMNIVSSVSVEYPQCPPSS 141 (204)
T ss_pred EEEeccc--ccCCcccCceEEEEEEEEEeCCCEEEEEEEecccCCCCCCC
Confidence 9999987 33 34999999999999998889999999999999998764
No 3
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=99.83 E-value=3.9e-20 Score=166.52 Aligned_cols=123 Identities=17% Similarity=0.316 Sum_probs=106.7
Q ss_pred ccccCCcEEEEeec-CeEEEEEecccCCCCccCccceEEeeeeecCHHHHHHHhh-ccCCCcccccceeeeeeEEEEEeC
Q 019858 195 AFSRKHWRLLQCQN-GLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIFELVM-SMDGTRYEWDCSFQYGSLVEEVDG 272 (335)
Q Consensus 195 v~~~~~W~l~~~~n-Glrif~e~~~~~~~~~~~~~~~kavgvV~aspe~IFe~lm-~~d~~R~eWD~~~~~~~vVE~iD~ 272 (335)
++....|++..-++ |+.||....+. .+.++|++|+|++||++||+.|+ +++ .|.+||..+.++++||++|+
T Consensus 20 ~~~~~~W~l~~~~~~~i~i~~r~~~~------~~~~~k~~~~i~~~~~~v~~~l~~d~~-~~~~Wd~~~~~~~~i~~~d~ 92 (208)
T cd08868 20 ILTDPGWKLEKNTTWGDVVYSRNVPG------VGKVFRLTGVLDCPAEFLYNELVLNVE-SLPSWNPTVLECKIIQVIDD 92 (208)
T ss_pred HhcCCCceEEEecCCCCEEEEEEcCC------CceEEEEEEEEcCCHHHHHHHHHcCcc-ccceecCcccceEEEEEecC
Confidence 34455899999987 99999997652 33689999999999999998665 666 69999999999999999999
Q ss_pred cccEEEEEEeeCcccCcccCceeEEEEeeEecCCCcEEEEEeeeechhhhhhcc
Q 019858 273 HTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYGSMRTVVHNQDMYELTW 326 (335)
Q Consensus 273 HtdIvy~~~~p~wlp~~~~~RDlv~~RyWrR~~DGsYvIl~~Sv~H~~~~~~t~ 326 (335)
|++|+|...+|. +|+.+++||||++|+|++.+ |+|+|+..|++||+++.+-.
T Consensus 93 ~~~i~y~~~~~~-~~~~vs~RDfV~~r~~~~~~-~~~~i~~~sv~h~~~P~~~g 144 (208)
T cd08868 93 NTDISYQVAAEA-GGGLVSPRDFVSLRHWGIRE-NCYLSSGVSVEHPAMPPTKN 144 (208)
T ss_pred CcEEEEEEecCc-CCCcccccceEEEEEEEecC-CeEEEEEEeccCCCCCCCCC
Confidence 999999999876 45679999999999999875 78999999999999986643
No 4
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=99.83 E-value=3e-20 Score=168.85 Aligned_cols=121 Identities=19% Similarity=0.244 Sum_probs=104.8
Q ss_pred cCCcEEEEeecCeEEEEEecccCCCCccCccceEEeeeeecCHHHHHHHhhccCC-CcccccceeeeeeEEEEEeCcccE
Q 019858 198 RKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIFELVMSMDG-TRYEWDCSFQYGSLVEEVDGHTAI 276 (335)
Q Consensus 198 ~~~W~l~~~~nGlrif~e~~~~~~~~~~~~~~~kavgvV~aspe~IFe~lm~~d~-~R~eWD~~~~~~~vVE~iD~HtdI 276 (335)
+..|++..-.||+.||...... ..+..+|++|+|++||++||++|++.+. .|.+||..+.+++|||+||+++.|
T Consensus 21 ~~~W~~~~~~~~i~v~~~~~~~-----~~~~~~k~e~~i~~s~~~~~~~l~d~~~~~r~~W~~~~~~~~vle~id~~~~i 95 (208)
T cd08903 21 ESGWKTCRRTNEVAVSWRPSAE-----FAGNLYKGEGIVYATLEQVWDCLKPAAGGLRVKWDQNVKDFEVVEAISDDVSV 95 (208)
T ss_pred ccCCEEEEcCCCEEEEeeecCC-----CCCcEEEEEEEecCCHHHHHHHHHhccchhhhhhhhccccEEEEEEecCCEEE
Confidence 5789999999999999885420 1124699999999999999999998754 789999999999999999999999
Q ss_pred EEEEEeeCccc-CcccCceeEEEEeeEecCCCcEEEEEeeeechhhhhhc
Q 019858 277 LYHRLQLDWFP-MFVWPRDLCYVRYWRRNDDGSYGSMRTVVHNQDMYELT 325 (335)
Q Consensus 277 vy~~~~p~wlp-~~~~~RDlv~~RyWrR~~DGsYvIl~~Sv~H~~~~~~t 325 (335)
+|. +.+|.| ..+++||||.+|+|++.+||+|+|.+.|+.||+|+.+.
T Consensus 96 ~~~--~~p~~~~~~vs~RDfV~~~~~~~~~d~~i~i~~~sv~h~~~P~~~ 143 (208)
T cd08903 96 CRT--VTPSAAMKIISPRDFVDVVLVKRYEDGTISSNATNVEHPLCPPQA 143 (208)
T ss_pred EEE--ecchhcCCCcCCCceEEEEEEEecCCceEEEeEEeccCCCCCCCC
Confidence 877 666753 34999999999999999999999999999999988664
No 5
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=99.82 E-value=7.3e-20 Score=170.24 Aligned_cols=119 Identities=18% Similarity=0.285 Sum_probs=105.8
Q ss_pred CCcEEEEeecCeEEEEEecccCCCCccCcc--ceEEeeeee-cCHHHHHHHhhccCCCcccccceeeeeeEEEEEeCccc
Q 019858 199 KHWRLLQCQNGLRIFEELLEVDYLPRSCSR--AMKAVGVVE-ASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTA 275 (335)
Q Consensus 199 ~~W~l~~~~nGlrif~e~~~~~~~~~~~~~--~~kavgvV~-aspe~IFe~lm~~d~~R~eWD~~~~~~~vVE~iD~Htd 275 (335)
..|+++.++||++||....+.. ... .+||+++|. +|+++++++++|++ .|.+||..+...+|||++|+|++
T Consensus 26 ~~W~l~~~~~gikVy~r~~~~s-----g~~~~~~Ka~~~v~~vt~~~~~~~l~D~~-~r~~Wd~~~~~~~vie~l~~~~~ 99 (235)
T cd08872 26 DGWQLFAEEGEMKVYRREVEED-----GVVLDPLKATHAVKGVTGHEVCHYFFDPD-VRMDWETTLENFHVVETLSQDTL 99 (235)
T ss_pred CCCEEEEeCCceEEEEEECCCC-----CceeeeEEEEEEECCCCHHHHHHHHhChh-hHHHHHhhhheeEEEEecCCCCE
Confidence 3799999999999999876632 112 599999999 89999999999998 69999999999999999999999
Q ss_pred EEEEEEeeCcccCcccCceeEEEEeeEecCC-------CcEEEEEeeeechhhhhhcc
Q 019858 276 ILYHRLQLDWFPMFVWPRDLCYVRYWRRNDD-------GSYGSMRTVVHNQDMYELTW 326 (335)
Q Consensus 276 Ivy~~~~p~wlp~~~~~RDlv~~RyWrR~~D-------GsYvIl~~Sv~H~~~~~~t~ 326 (335)
|+|..++.+| -+++||+|+.|+|++.+| |+|+||.+|++||.+|.+-.
T Consensus 100 I~Y~~~k~Pw---Pvs~RD~V~~~~~~~~~d~~~~~~~~~~vii~~Sv~h~~~P~~~g 154 (235)
T cd08872 100 IFHQTHKRVW---PAAQRDALFVSHIRKIPALEEPNAHDTWIVCNFSVDHDSAPLNNK 154 (235)
T ss_pred EEEEEccCCC---CCCCcEEEEEEEEEecCccccccCCCeEEEEEecccCccCCCCCC
Confidence 9999999655 389999999999999887 67999999999999987743
No 6
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=99.81 E-value=1e-19 Score=167.11 Aligned_cols=91 Identities=26% Similarity=0.335 Sum_probs=83.9
Q ss_pred cceEEeeeeecCHHHHHHHhhccCCCcccccceeeeeeEEEEEeCcccEEEEEEeeCcccCcccCceeEEEEeeEec-CC
Q 019858 228 RAMKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRN-DD 306 (335)
Q Consensus 228 ~~~kavgvV~aspe~IFe~lm~~d~~R~eWD~~~~~~~vVE~iD~HtdIvy~~~~p~wlp~~~~~RDlv~~RyWrR~-~D 306 (335)
.++|++..|+++|++|...|+. .|.+||..+.++++||++|+||||+|+++++.+ | +++||||++|+|+++ +|
T Consensus 52 k~~r~~~ei~~~p~~VL~~vl~---~R~~WD~~~~~~~~ie~ld~~tdi~~y~~~~~~-P--~~~RD~v~~R~w~~~~~~ 125 (205)
T cd08909 52 RLWKVSVEVEAPPSVVLNRVLR---ERHLWDEDFLQWKVVETLDKQTEVYQYVLNCMA-P--HPSRDFVVLRSWRTDLPK 125 (205)
T ss_pred EEEEEEEEeCCCHHHHHHHHHh---hHhhHHhhcceeEEEEEeCCCcEEEEEEeecCC-C--CCCCEEEEEEEEEEeCCC
Confidence 4899999999999999998875 599999999999999999999999999999744 3 699999999999988 59
Q ss_pred CcEEEEEeeeechhhhhh
Q 019858 307 GSYGSMRTVVHNQDMYEL 324 (335)
Q Consensus 307 GsYvIl~~Sv~H~~~~~~ 324 (335)
|+|+|+++||+|++++..
T Consensus 126 G~~vi~~~Sv~H~~~p~~ 143 (205)
T cd08909 126 GACSLVSVSVEHEEAPLL 143 (205)
T ss_pred CcEEEEEecCCCCcCCCC
Confidence 999999999999998764
No 7
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=99.81 E-value=2.9e-19 Score=160.64 Aligned_cols=121 Identities=17% Similarity=0.276 Sum_probs=103.4
Q ss_pred CCcEEEEeecCeEEEEEecccCCCCccCccceEEeeeeecCHHHHHHHhhcc-CCCcccccceeeeeeEEEEEeCcccEE
Q 019858 199 KHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIFELVMSM-DGTRYEWDCSFQYGSLVEEVDGHTAIL 277 (335)
Q Consensus 199 ~~W~l~~~~nGlrif~e~~~~~~~~~~~~~~~kavgvV~aspe~IFe~lm~~-d~~R~eWD~~~~~~~vVE~iD~HtdIv 277 (335)
..|++..-.+|+.||..... ...++++|++|.|+++|++||+.|++. ...|.+||..+.+.++||+||++++|+
T Consensus 22 ~~W~~~~~~~~i~v~~~~~~-----~~~~~~~k~~~~i~~~~~~v~~~l~d~~~~~r~~Wd~~~~~~~~le~id~~~~i~ 96 (206)
T cd08867 22 DGWKVLKTVKNITVSWKPST-----EFTGHLYRAEGIVDALPEKVIDVIIPPCGGLRLKWDKSLKHYEVLEKISEDLCVG 96 (206)
T ss_pred CCcEEEEcCCCcEEEEecCC-----CCCCEEEEEEEEEcCCHHHHHHHHHhcCccccccccccccceEEEEEeCCCeEEE
Confidence 68999999999999997321 112368999999999999999999993 237999999999999999999999999
Q ss_pred EEEEeeCcc-cCcccCceeEEEEeeEecCCCcEEEEEeeeechhhhhhcc
Q 019858 278 YHRLQLDWF-PMFVWPRDLCYVRYWRRNDDGSYGSMRTVVHNQDMYELTW 326 (335)
Q Consensus 278 y~~~~p~wl-p~~~~~RDlv~~RyWrR~~DGsYvIl~~Sv~H~~~~~~t~ 326 (335)
|.. .+|. .+.+++||||++|+|+|.+||+|+|+..||+||+++.+-.
T Consensus 97 ~~~--~p~~~~~~vs~RDfV~~~~~~~~~~~~~~i~~~Sv~hp~~p~~~~ 144 (206)
T cd08867 97 RTI--TPSAAMGLISPRDFVDLVYVKRYEDNQWSSSGKSVDIPERPPTPG 144 (206)
T ss_pred EEE--ccccccCccCCcceEEEEEEEEeCCCeEEEEEEeccCCCCCCCCC
Confidence 984 3343 2359999999999999999999999999999998876543
No 8
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=99.77 E-value=2.4e-18 Score=155.07 Aligned_cols=117 Identities=21% Similarity=0.247 Sum_probs=102.2
Q ss_pred ccCCcEEEEeecCeEEEEEecccCCCCccCccceEEeeeeecCHHHHHHHhhccCCCcccccceeeeeeEEEEEeCcccE
Q 019858 197 SRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAI 276 (335)
Q Consensus 197 ~~~~W~l~~~~nGlrif~e~~~~~~~~~~~~~~~kavgvV~aspe~IFe~lm~~d~~R~eWD~~~~~~~vVE~iD~HtdI 276 (335)
....|++..-+||++||....+. .....++|++++|+|+|++|++.||+ .|.+||..+.++++||++|+|++|
T Consensus 17 ~~~~W~~~~~~~gi~I~~k~~~~----~~~l~~~K~~~~v~a~~~~v~~~l~d---~r~~Wd~~~~~~~vie~id~~~~i 89 (197)
T cd08869 17 KSKGWVSVSSSDHVELAFKKVDD----GHPLRLWRASTEVEAPPEEVLQRILR---ERHLWDDDLLQWKVVETLDEDTEV 89 (197)
T ss_pred ccCCceEEecCCcEEEEEEeCCC----CCcEEEEEEEEEeCCCHHHHHHHHHH---HHhccchhhheEEEEEEecCCcEE
Confidence 36889999999999999987641 12346899999999999999999985 489999999999999999999999
Q ss_pred EEEEEeeCcccCcccCceeEEEEeeEe-cCCCcEEEEEeeeech-hhhh
Q 019858 277 LYHRLQLDWFPMFVWPRDLCYVRYWRR-NDDGSYGSMRTVVHNQ-DMYE 323 (335)
Q Consensus 277 vy~~~~p~wlp~~~~~RDlv~~RyWrR-~~DGsYvIl~~Sv~H~-~~~~ 323 (335)
+|+.+.++| | +++||||++|+|++ .++|+|+|++.||.|| .++.
T Consensus 90 ~y~~~~~p~-p--v~~RDfV~~r~~~~~~~~g~~~i~~~Sv~~~~~~p~ 135 (197)
T cd08869 90 YQYVTNSMA-P--HPTRDYVVLRTWRTDLPKGACVLVETSVEHTEPVPL 135 (197)
T ss_pred EEEEeeCCC-C--CCCceEEEEEEEEecCCCCcEEEEEECCcCCCCCCC
Confidence 999999876 3 69999999999996 5788999999999995 5544
No 9
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=99.76 E-value=5.1e-18 Score=153.96 Aligned_cols=123 Identities=16% Similarity=0.273 Sum_probs=105.7
Q ss_pred ccCCcEEEEeecCeEEEEEecccCCCCccCccceEEeeee-ecCHHHHHHHhhccCCCcccccceeeeeeEEEEEeC-cc
Q 019858 197 SRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVV-EASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDG-HT 274 (335)
Q Consensus 197 ~~~~W~l~~~~nGlrif~e~~~~~~~~~~~~~~~kavgvV-~aspe~IFe~lm~~d~~R~eWD~~~~~~~vVE~iD~-Ht 274 (335)
+...|+++.-++|+.||....+. +....+|+++++ ++|+++++++++|++ .|.+||..+.+.++||++++ ++
T Consensus 19 ~~~~W~l~~~~~~i~Vy~r~~~~-----s~~~~~k~~~~~~d~s~~~~~~~~~D~~-~r~~Wd~~~~~~~~le~~~~~~~ 92 (207)
T cd08911 19 EPDGWEPFIEKKDMLVWRREHPG-----TGLYEYKVYGSFDDVTARDFLNVQLDLE-YRKKWDATAVELEVVDEDPETGS 92 (207)
T ss_pred cCCCcEEEEEcCceEEEEeccCC-----CCcEEEEEEEEEcCCCHHHHHHHHhCHH-HHHHHHhhheeEEEEEccCCCCC
Confidence 56679999999999999987652 334589998877 999999999999998 69999999999999999755 99
Q ss_pred cEEEEEEeeCcccCcccCceeEEEEeeEecCC-CcEEEEEeeeechhhhhhcccc
Q 019858 275 AILYHRLQLDWFPMFVWPRDLCYVRYWRRNDD-GSYGSMRTVVHNQDMYELTWRV 328 (335)
Q Consensus 275 dIvy~~~~p~wlp~~~~~RDlv~~RyWrR~~D-GsYvIl~~Sv~H~~~~~~t~~~ 328 (335)
+|+|..+++ ||-+++||+|+.|.|+++++ |.|+|+.+||.||.++..-..|
T Consensus 93 ~i~y~~~~~---P~P~s~RD~V~~r~~~~~~~~~~~~i~~~sv~hp~~P~~~g~V 144 (207)
T cd08911 93 EIIYWEMQW---PKPFANRDYVYVRRYIIDEENKLIVIVSKAVQHPSYPESPKKV 144 (207)
T ss_pred EEEEEEEEC---CCCCCCccEEEEEEEEEcCCCCEEEEEEecCCCCCCCCCCCCE
Confidence 999999995 55589999999999888854 6789999999999998765433
No 10
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=99.76 E-value=5.8e-18 Score=153.87 Aligned_cols=118 Identities=16% Similarity=0.296 Sum_probs=104.4
Q ss_pred cCCcEEEEeecCeEEEEEecccCCCCccCccceEEeeee-ecCHHHHHHHhhccCCCcccccceeeeeeEEEEEeCcccE
Q 019858 198 RKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVV-EASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAI 276 (335)
Q Consensus 198 ~~~W~l~~~~nGlrif~e~~~~~~~~~~~~~~~kavgvV-~aspe~IFe~lm~~d~~R~eWD~~~~~~~vVE~iD~HtdI 276 (335)
...|++...++|++||....+. +...++|+.+++ ++||++||+.|++++ .|.+||..+..+++||++|++++|
T Consensus 22 ~~~W~~~~~~~gi~iy~r~~~~-----~~~~~~k~~~~~~~~s~e~~~~~l~D~~-~r~~Wd~~~~e~~~ie~~d~~~~i 95 (222)
T cd08871 22 TDGWKLKYNKNNVKVWTKNPEN-----SSIKMIKVSAIFPDVPAETLYDVLHDPE-YRKTWDSNMIESFDICQLNPNNDI 95 (222)
T ss_pred CCCcEEEEcCCCeEEEEeeCCC-----CceEEEEEEEEeCCCCHHHHHHHHHChh-hhhhhhhhhceeEEEEEcCCCCEE
Confidence 3479999999999999986551 334689999987 789999999999987 699999999999999999999999
Q ss_pred EEEEEeeCcccCcccCceeEEEEeeEecCCCcEEEEEeeeechhhhhhc
Q 019858 277 LYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYGSMRTVVHNQDMYELT 325 (335)
Q Consensus 277 vy~~~~p~wlp~~~~~RDlv~~RyWrR~~DGsYvIl~~Sv~H~~~~~~t 325 (335)
+|..++.+| .+++||||+.|.|++.+ |+|+|+..|+.|++++.+-
T Consensus 96 ~y~~~~~P~---pvs~RDfV~~r~~~~~~-~~~vi~~~sv~~~~~P~~~ 140 (222)
T cd08871 96 GYYSAKCPK---PLKNRDFVNLRSWLEFG-GEYIIFNHSVKHKKYPPRK 140 (222)
T ss_pred EEEEeECCC---CCCCCeEEEEEEEEeCC-CEEEEEeccccCCCCCCCC
Confidence 999999655 49999999999999876 9999999999999998653
No 11
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=99.74 E-value=1e-17 Score=151.65 Aligned_cols=117 Identities=15% Similarity=0.171 Sum_probs=104.3
Q ss_pred CCcEEEEeecC----eEEEEEecccCCCCccCccceEEeeee-ecCHHHHHHHhhccCCCcccccceeeeeeEEEEEeC-
Q 019858 199 KHWRLLQCQNG----LRIFEELLEVDYLPRSCSRAMKAVGVV-EASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDG- 272 (335)
Q Consensus 199 ~~W~l~~~~nG----lrif~e~~~~~~~~~~~~~~~kavgvV-~aspe~IFe~lm~~d~~R~eWD~~~~~~~vVE~iD~- 272 (335)
..|+++.-++| ++||....+. +....+|+++++ ++||++++++++|++ .|.+||..+.+.++||+.+.
T Consensus 22 ~~W~~~~~k~~~~~~i~vy~r~~~~-----s~~~~~k~~~~~~~~s~~~~~~~l~D~~-~r~~Wd~~~~~~~~le~~~~~ 95 (209)
T cd08870 22 QAWQQVMDKSTPDMSYQAWRRKPKG-----TGLYEYLVRGVFEDCTPELLRDFYWDDE-YRKKWDETVIEHETLEEDEKS 95 (209)
T ss_pred CcceEhhhccCCCceEEEEecccCC-----CCceEEEEEEEEcCCCHHHHHHHHcChh-hHhhhhhheeeEEEEEecCCC
Confidence 57999999999 9999987652 234589999999 569999999999998 59999999999999999655
Q ss_pred cccEEEEEEeeCcccCcccCceeEEEEeeEecCCCcEEEEEeeeechhhhhh
Q 019858 273 HTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYGSMRTVVHNQDMYEL 324 (335)
Q Consensus 273 HtdIvy~~~~p~wlp~~~~~RDlv~~RyWrR~~DGsYvIl~~Sv~H~~~~~~ 324 (335)
+++|+|+.++.+| -+++||+|+.|.|+...+|+|+|+.+|+.||.+++.
T Consensus 96 ~~~i~y~~~~~P~---P~s~RD~V~~r~~~~~~~~~~~i~~~sv~~~~~P~~ 144 (209)
T cd08870 96 GTEIVRWVKKFPF---PLSDREYVIARRLWESDDRSYVCVTKGVPYPSVPRS 144 (209)
T ss_pred CcEEEEEEEECCC---cCCCceEEEEEEEEEcCCCEEEEEEeCCcCCCCCCC
Confidence 7999999999544 589999999999999889999999999999999985
No 12
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=99.74 E-value=1.5e-17 Score=151.89 Aligned_cols=120 Identities=18% Similarity=0.293 Sum_probs=105.0
Q ss_pred cCCcEEEEe-ecCeEEEEEecccCCCCccCccceEEeeeeecCHHHHH-HHhhccCCCcccccceeeeeeEEEEEeCccc
Q 019858 198 RKHWRLLQC-QNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIF-ELVMSMDGTRYEWDCSFQYGSLVEEVDGHTA 275 (335)
Q Consensus 198 ~~~W~l~~~-~nGlrif~e~~~~~~~~~~~~~~~kavgvV~aspe~IF-e~lm~~d~~R~eWD~~~~~~~vVE~iD~Htd 275 (335)
...|++..- +||++||....+ +.+.++|+.++|++||++|| ++|.+++ .|.+||..+.+.++||++|++++
T Consensus 24 ~~~W~l~~~~~~gi~V~s~~~~------~~~~~fk~~~~v~~~~~~l~~~ll~D~~-~~~~W~~~~~~~~vi~~~~~~~~ 96 (209)
T cd08906 24 EENWKFEKNNDNGDTVYTLEVP------FHGKTFILKAFMQCPAELVYQEVILQPE-KMVLWNKTVSACQVLQRVDDNTL 96 (209)
T ss_pred ccCCEEEEecCCCCEEEEeccC------CCCcEEEEEEEEcCCHHHHHHHHHhChh-hccccCccchhhhheeeccCCcE
Confidence 568999865 599999985443 22378999999999999998 6889988 59999999999999999999999
Q ss_pred EEEEEEeeCcccCcccCceeEEEEeeEecCCCcEEEEEeeeechhhhhhcc
Q 019858 276 ILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYGSMRTVVHNQDMYELTW 326 (335)
Q Consensus 276 Ivy~~~~p~wlp~~~~~RDlv~~RyWrR~~DGsYvIl~~Sv~H~~~~~~t~ 326 (335)
|+| .+..+|+++.+++||||++|+|.+..|| |+++..|+.|+.++..-.
T Consensus 97 i~Y-~v~~p~~~~pv~~RDfV~~r~~~~~~~~-~i~~~~sv~~~~~P~~~~ 145 (209)
T cd08906 97 VSY-DVAAGAAGGVVSPRDFVNVRRIERRRDR-YVSAGISTTHSHKPPLSK 145 (209)
T ss_pred EEE-EEccccccCCCCCCceEEEEEEEecCCc-EEEEEEEEecCCCCCCCC
Confidence 999 8888888778999999999999999888 888889999998886543
No 13
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=99.74 E-value=3.6e-17 Score=140.03 Aligned_cols=117 Identities=36% Similarity=0.648 Sum_probs=106.5
Q ss_pred CCcEEEEeecCeEEEEEecccCCCCccCccceEEeeeeecCHHHHHHHhhccCCCcccccceeeeeeEEEEEeCcccEEE
Q 019858 199 KHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILY 278 (335)
Q Consensus 199 ~~W~l~~~~nGlrif~e~~~~~~~~~~~~~~~kavgvV~aspe~IFe~lm~~d~~R~eWD~~~~~~~vVE~iD~HtdIvy 278 (335)
..|++....+|++||....+. +..+++|+++.|++|+++|++++++++ .|.+||..+.++.++|++++++.|+|
T Consensus 15 ~~W~~~~~~~~v~vy~~~~~~-----~~~~~~k~~~~i~~~~~~v~~~l~d~~-~~~~w~~~~~~~~vl~~~~~~~~i~~ 88 (193)
T cd00177 15 EGWKLVKEKDGVKIYTKPYED-----SGLKLLKAEGVIPASPEQVFELLMDID-LRKKWDKNFEEFEVIEEIDEHTDIIY 88 (193)
T ss_pred CCeEEEEECCcEEEEEecCCC-----CCceeEEEEEEECCCHHHHHHHHhCCc-hhhchhhcceEEEEEEEeCCCeEEEE
Confidence 479999999999999987652 345799999999999999999999987 59999999999999999999999999
Q ss_pred EEEeeCcccCcccCceeEEEEeeEecCCCcEEEEEeeeechhhhhh
Q 019858 279 HRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYGSMRTVVHNQDMYEL 324 (335)
Q Consensus 279 ~~~~p~wlp~~~~~RDlv~~RyWrR~~DGsYvIl~~Sv~H~~~~~~ 324 (335)
..+++.|. +++||||+.++|.+.+||+|+|+++|+.|+.++.+
T Consensus 89 ~~~~~p~p---~~~Rdfv~~~~~~~~~~~~~~~~~~Si~~~~~p~~ 131 (193)
T cd00177 89 YKTKPPWP---VSPRDFVYLRRRRKLDDGTYVIVSKSVDHDSHPKE 131 (193)
T ss_pred EEeeCCCc---cCCccEEEEEEEEEcCCCeEEEEEeecCCCCCCCC
Confidence 99997663 89999999999999999999999999999876654
No 14
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=99.73 E-value=3.1e-17 Score=153.56 Aligned_cols=147 Identities=16% Similarity=0.149 Sum_probs=118.2
Q ss_pred CCCCCCcccCcccccCccccCC--CCccccccCCcEEEEeecCeEEEEEecccCCCCccCccceEEeeeeecCHHHHHHH
Q 019858 169 NGPPDLVHDWTRELDSDLSNQN--INNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIFEL 246 (335)
Q Consensus 169 ~gp~~~~~dwt~~~~~~~~n~~--~~~dv~~~~~W~l~~~~nGlrif~e~~~~~~~~~~~~~~~kavgvV~aspe~IFe~ 246 (335)
+.-..++..|+..++.-+++.| +=....+.+.|++..-+||++||.... +....+|++++|++|+++||++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~W~l~~~k~gIkVytr~~-------s~~l~fk~e~~vd~s~~~v~dl 95 (235)
T cd08873 23 QREVPLSVAWDRSNQMYLSYGNVTALKRLAAKSDWTVASSTTSVTLYTLEQ-------DGVLSFCVELKVQTCASDAFDL 95 (235)
T ss_pred CccCceEcccCccccEEEeeCCHHHHhhccccCCCEEEEcCCCEEEEEecC-------CCceEEEEEEEecCCHHHHHHH
Confidence 3345677888876655443322 223455689999999999999999852 2235789999999999999999
Q ss_pred hhccCCCcccccceeeeeeEEEEEeCcccEEEEEEeeCcccCcccCceeEEEEeeEecC-C-CcEEEEEeeeechhhhhh
Q 019858 247 VMSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRND-D-GSYGSMRTVVHNQDMYEL 324 (335)
Q Consensus 247 lm~~d~~R~eWD~~~~~~~vVE~iD~HtdIvy~~~~p~wlp~~~~~RDlv~~RyWrR~~-D-GsYvIl~~Sv~H~~~~~~ 324 (335)
|.|++ .|.+||..+...++||++|+..-|+|.+..++| | ++|||||++++|++.. + |+|+|+++||.|+.+|..
T Consensus 96 L~D~~-~R~~WD~~~~e~evI~~id~d~~iyy~~~p~Pw-P--vk~RDfV~~~s~~~~~~~~~~~~I~~~SV~h~~~Pp~ 171 (235)
T cd08873 96 LSDPF-KRPEWDPHGRSCEEVKRVGEDDGIYHTTMPSLT-S--EKPNDFVLLVSRRKPATDGDPYKVAFRSVTLPRVPQT 171 (235)
T ss_pred HhCcc-hhhhhhhcccEEEEEEEeCCCcEEEEEEcCCCC-C--CCCceEEEEEEEEeccCCCCeEEEEEeeeecccCCCC
Confidence 99998 599999999999999999988877888877666 4 9999999999999943 3 359999999999998865
Q ss_pred cc
Q 019858 325 TW 326 (335)
Q Consensus 325 t~ 326 (335)
-.
T Consensus 172 kg 173 (235)
T cd08873 172 PG 173 (235)
T ss_pred CC
Confidence 43
No 15
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=99.73 E-value=2.2e-17 Score=154.75 Aligned_cols=143 Identities=17% Similarity=0.199 Sum_probs=118.2
Q ss_pred CCCcccCcccccCccccCC--CCccccccCCcEEEEeecCeEEEEEecccCCCCccCccceEEeeeeecCHHHHHHHhhc
Q 019858 172 PDLVHDWTRELDSDLSNQN--INNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIFELVMS 249 (335)
Q Consensus 172 ~~~~~dwt~~~~~~~~n~~--~~~dv~~~~~W~l~~~~nGlrif~e~~~~~~~~~~~~~~~kavgvV~aspe~IFe~lm~ 249 (335)
..++..|+..++.-+++.| +-....+...|++..-+||++||... + +.-..+|++.++++|++++|++|.|
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~W~l~~dkdgIkVytr~-~------s~~l~fk~e~~vdvs~~~l~~LL~D 99 (236)
T cd08914 27 VPLCIHWDIGNQASLSDSNVEALKKLAAKSGWEVTSTVEKIKIYTLE-E------HDVLSVWVEKHVKRPAHLAYRLLSD 99 (236)
T ss_pred CceecccCCCceEEEeeCCHHHhhhhcccCCCEEEEccCCEEEEEec-C------CCcEEEEEEEEEcCCHHHHHHHHhC
Confidence 4466778776554443322 22345568999999999999999983 2 2235899999999999999999999
Q ss_pred cCCCcccccceeeeeeEEEEEeCcccEEEEEEeeCcccCcccCceeEEEEeeEecC-CCc-EEEEEeeeechhhhhhc
Q 019858 250 MDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRND-DGS-YGSMRTVVHNQDMYELT 325 (335)
Q Consensus 250 ~d~~R~eWD~~~~~~~vVE~iD~HtdIvy~~~~p~wlp~~~~~RDlv~~RyWrR~~-DGs-YvIl~~Sv~H~~~~~~t 325 (335)
++ .|.+||..+.+.+|||++|+..+ ||....|+|.| +++||+|+++.|++.. ||. |+|..+||.||..|..-
T Consensus 100 ~~-~r~~Wd~~~~e~~vI~qld~~~~-vY~~~~pPw~P--vk~RD~V~~~s~~~~~~dg~~~~I~~~SVp~~~~Pp~k 173 (236)
T cd08914 100 FT-KRPLWDPHFLSCEVIDWVSEDDQ-IYHITCPIVNN--DKPKDLVVLVSRRKPLKDGNTYVVAVKSVILPSVPPSP 173 (236)
T ss_pred hh-hhchhHHhhceEEEEEEeCCCcC-EEEEecCCCCC--CCCceEEEEEEEEecCCCCCEEEEEEeecccccCCCCC
Confidence 98 59999999999999999999999 88888887755 6999999999999887 997 99999999998887654
No 16
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=99.72 E-value=6.7e-17 Score=142.84 Aligned_cols=120 Identities=32% Similarity=0.427 Sum_probs=103.0
Q ss_pred cCCcEEEEe-ecCeEEEEEecccCCCCccCccceEEeeeeecCHHHHHH-HhhccCCCcccccceeeeeeEEEEEeCccc
Q 019858 198 RKHWRLLQC-QNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIFE-LVMSMDGTRYEWDCSFQYGSLVEEVDGHTA 275 (335)
Q Consensus 198 ~~~W~l~~~-~nGlrif~e~~~~~~~~~~~~~~~kavgvV~aspe~IFe-~lm~~d~~R~eWD~~~~~~~vVE~iD~Htd 275 (335)
...|++..- +||..+|....+. .+.+.++|++|+|+++|+++|. ++++++ .|.+||..+..+++||++|++++
T Consensus 18 ~~~W~~~~~~~~~~~~~~~~~~~----~~~~~~~k~~~~v~~~~~~~~~~~~~d~~-~r~~Wd~~~~~~~~ie~~~~~~~ 92 (206)
T smart00234 18 EPGWVLSSENENGDEVRSILSPG----RSPGEASRAVGVVPMVCADLVEELMDDLR-YRPEWDKNVAKAETLEVIDNGTV 92 (206)
T ss_pred CCccEEccccCCcceEEEEccCC----CCceEEEEEEEEEecChHHHHHHHHhccc-chhhCchhcccEEEEEEECCCCe
Confidence 456999885 8999999876542 1346799999999999998665 555655 69999999999999999999999
Q ss_pred EEEEEEeeCcccCcccCceeEEEEeeEecCCCcEEEEEeeeechhhhhh
Q 019858 276 ILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYGSMRTVVHNQDMYEL 324 (335)
Q Consensus 276 Ivy~~~~p~wlp~~~~~RDlv~~RyWrR~~DGsYvIl~~Sv~H~~~~~~ 324 (335)
|+|...++.| ..+++||||+.|+|+..+||+|+|+..|+.|+.++.+
T Consensus 93 i~~~~~~~~~--~p~~~RDfv~~r~~~~~~~~~~vi~~~Sv~~~~~p~~ 139 (206)
T smart00234 93 IYHYVSKFVA--GPVSPRDFVFVRYWRELVDGSYAVVDVSVTHPTSPPT 139 (206)
T ss_pred EEEEEEeccc--CcCCCCeEEEEEEEEEcCCCcEEEEEEECCCCCCCCC
Confidence 9999999766 2589999999999999899999999999999998864
No 17
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=99.70 E-value=3.6e-16 Score=137.67 Aligned_cols=122 Identities=26% Similarity=0.477 Sum_probs=100.8
Q ss_pred cccCCcEEEEe-ecCeEEEEEecccCCCCccCccceEEeeeeecCHHHHHHHhhccCCCcccccceeeeeeEEEEEeCcc
Q 019858 196 FSRKHWRLLQC-QNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHT 274 (335)
Q Consensus 196 ~~~~~W~l~~~-~nGlrif~e~~~~~~~~~~~~~~~kavgvV~aspe~IFe~lm~~d~~R~eWD~~~~~~~vVE~iD~Ht 274 (335)
.....|++..- .++...+....+.+ ....+.+|++++|+++++++|+.+|+.. . +||..+....+||++|+++
T Consensus 16 ~~~~~W~~~~~~~~~~~~~~~~~~~~---~~~~~~~k~~~~v~~~~~~~~~~~~~~~--~-~Wd~~~~~~~~le~~~~~~ 89 (206)
T PF01852_consen 16 EDEDGWKLYKDKKNGDVYYKKVSPSD---SCPIKMFKAEGVVPASPEQVVEDLLDDR--E-QWDKMCVEAEVLEQIDEDT 89 (206)
T ss_dssp HTCTTCEEEEEETTTCEEEEEEECSS---STSCEEEEEEEEESSCHHHHHHHHHCGG--G-HHSTTEEEEEEEEEEETTE
T ss_pred cCCCCCeEeEccCCCeEEEEEeCccc---cccceEEEEEEEEcCChHHHHHHHHhhH--h-hcccchhhheeeeecCCCC
Confidence 34678999994 44444444444321 0245799999999999999999999764 2 9999999999999999999
Q ss_pred cEEEEEEeeCcccCcccCceeEEEEeeEecCCCcEEEEEeeeechhhhhh
Q 019858 275 AILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYGSMRTVVHNQDMYEL 324 (335)
Q Consensus 275 dIvy~~~~p~wlp~~~~~RDlv~~RyWrR~~DGsYvIl~~Sv~H~~~~~~ 324 (335)
+|+|...++.|. ..+++||||+.|+|++.+||+|+|++.||+||.++..
T Consensus 90 ~i~~~~~~~~~~-~p~~~RDfv~~~~~~~~~~~~~~i~~~Si~~~~~~~~ 138 (206)
T PF01852_consen 90 DIVYFVMKSPWP-GPVSPRDFVFLRSWRKDEDGTYVIVSRSIDHPQYPPN 138 (206)
T ss_dssp EEEEEEEE-CTT-TTSSEEEEEEEEEEEECTTSEEEEEEEEEEBTTSSTT
T ss_pred eEEEEEecccCC-CCCCCcEEEEEEEEEEeccceEEEEEeeecccccccc
Confidence 999999998774 2478899999999999999999999999999999884
No 18
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=99.67 E-value=4.5e-16 Score=145.95 Aligned_cols=144 Identities=22% Similarity=0.293 Sum_probs=114.6
Q ss_pred CCCcccCcccccCccccCCC--CccccccCCcEEEEeecCeEEEEEecccCCCCccCccceEEeeeeecCHHHHHHHhhc
Q 019858 172 PDLVHDWTRELDSDLSNQNI--NNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIFELVMS 249 (335)
Q Consensus 172 ~~~~~dwt~~~~~~~~n~~~--~~dv~~~~~W~l~~~~nGlrif~e~~~~~~~~~~~~~~~kavgvV~aspe~IFe~lm~ 249 (335)
..++..|+..++.-+++.|. -.-..+.+.|++..-+||++||.. .+ +....+|+.++|++|+++|+++|.|
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~W~l~~~~~gI~Vyt~-~~------s~~~~fK~e~~vd~s~e~v~~lL~D 102 (240)
T cd08913 30 VPLSVPWDPSNQVYLSYNNVSALKMLVAKDNWVLSSEKNQVRLYTL-EE------DKFLSFKVEMVVHVDAAQAFLLLSD 102 (240)
T ss_pred CceecccCccceeEEeecCHHHHHhhcccCCCEEEEccCCEEEEEE-eC------CCccEEEEEEEEcCCHHHHHHHHhC
Confidence 45677787765554433221 122345778999999999999993 22 3346889999999999999999999
Q ss_pred cCCCcccccceeeeeeEEEEEeCcccEEEEEEeeCcccCcccCceeEEEEeeEec-CCC-cEEEEEeeeechhhhhhc
Q 019858 250 MDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRN-DDG-SYGSMRTVVHNQDMYELT 325 (335)
Q Consensus 250 ~d~~R~eWD~~~~~~~vVE~iD~HtdIvy~~~~p~wlp~~~~~RDlv~~RyWrR~-~DG-sYvIl~~Sv~H~~~~~~t 325 (335)
++ .|.+||..+...+|||++|+.. .+|...-|.|. +-+++||||++++|++. ++| .|+|+.+|+.||++|..-
T Consensus 103 ~~-~r~~Wd~~~~e~~vIe~id~~~-~vY~v~~~p~~-~pvs~RDfV~~~s~~~~~~~g~~yii~~~sv~~P~~Pp~k 177 (240)
T cd08913 103 LR-RRPEWDKHYRSCELVQQVDEDD-AIYHVTSPSLS-GHGKPQDFVILASRRKPCDNGDPYVIALRSVTLPTHPPTP 177 (240)
T ss_pred hh-hhhhhHhhccEEEEEEecCCCc-EEEEEecCCCC-CCCCCCeEEEEEEEEeccCCCccEEEEEEEeecCCCCCCC
Confidence 98 5999999999999999999974 67888888774 45999999999999885 444 699999999999976543
No 19
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=99.66 E-value=6e-16 Score=141.78 Aligned_cols=121 Identities=14% Similarity=0.252 Sum_probs=105.3
Q ss_pred cccCCcEEEEeecCeEEEEEecccCCCCccCccceEEeeeeecCHHHHHHHhhccCCCcccccceeeeeeEEEEEeCccc
Q 019858 196 FSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTA 275 (335)
Q Consensus 196 ~~~~~W~l~~~~nGlrif~e~~~~~~~~~~~~~~~kavgvV~aspe~IFe~lm~~d~~R~eWD~~~~~~~vVE~iD~Htd 275 (335)
-+...|++-.-++|++||....+ +....++++++|++||++|+++|.|++ .|.+||..+.+.+|+|++|+.+.
T Consensus 19 ~~~~gW~l~~~~~gI~Vy~k~~~------~~~~~~~ge~~v~as~~~v~~ll~D~~-~r~~Wd~~~~~~~vl~~~~~d~~ 91 (205)
T cd08874 19 QATAGWSYQCLEKDVVIYYKVFN------GTYHGFLGAGVIKAPLATVWKAVKDPR-TRFLYDTMIKTARIHKTFTEDIC 91 (205)
T ss_pred hccCCcEEEecCCCEEEEEecCC------CCcceEEEEEEEcCCHHHHHHHHhCcc-hhhhhHHhhhheeeeeecCCCeE
Confidence 45789999999999999998644 234578999999999999999999998 59999999999999999999999
Q ss_pred EEEEEEeeCcccCcccCceeEEEEeeEecCCCcEEEEEeeeechhhhhhc
Q 019858 276 ILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYGSMRTVVHNQDMYELT 325 (335)
Q Consensus 276 Ivy~~~~p~wlp~~~~~RDlv~~RyWrR~~DGsYvIl~~Sv~H~~~~~~t 325 (335)
|+|.+....| |..+++||||+++.|+.++| +|+|..+||.||.+|...
T Consensus 92 i~y~~~~~Pw-p~~~~~RDfV~l~~~~~~~~-~~vi~~~SV~~~~~P~~~ 139 (205)
T cd08874 92 LVYLVHETPL-CLLKQPRDFCCLQVEAKEGE-LSVVACQSVYDKSMPEPG 139 (205)
T ss_pred EEEEEecCCC-CCCCCCCeEEEEEEEEECCC-cEEEEEEecccccCCCCC
Confidence 9999999666 44579999999999988655 555888999999988654
No 20
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=99.64 E-value=1.9e-15 Score=133.04 Aligned_cols=118 Identities=21% Similarity=0.371 Sum_probs=102.6
Q ss_pred ccccccCC-cEEEEeecCeEEEEEecccCCCCccCccceEEeeeeecCHHHHHHHhhccCCCcccccceeeeeeEEEEEe
Q 019858 193 NQAFSRKH-WRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVD 271 (335)
Q Consensus 193 ~dv~~~~~-W~l~~~~nGlrif~e~~~~~~~~~~~~~~~kavgvV~aspe~IFe~lm~~d~~R~eWD~~~~~~~vVE~iD 271 (335)
+.++++.. |+++.+++|++||....+. +....+++.++|++||++|++++++++ .|.+||..+..++|+|+++
T Consensus 10 ~~~~~~~~~W~~~~~~~~v~v~~~~~~~-----~~~~~~k~~~~i~~s~e~v~~vi~d~e-~~~~w~~~~~~~~vie~~~ 83 (195)
T cd08876 10 GAALAPDGDWQLVKDKDGIKVYTRDVEG-----SPLKEFKAVAEVDASIEAFLALLRDTE-SYPQWMPNCKESRVLKRTD 83 (195)
T ss_pred ccccCCCCCCEEEecCCCeEEEEEECCC-----CCeEEEEEEEEEeCCHHHHHHHHhhhH-hHHHHHhhcceEEEeecCC
Confidence 34555555 9999999999999987652 223689999999999999999999998 4889999999999999999
Q ss_pred CcccEEEEEEeeCcccCcccCceeEEEEeeEecC-CCcEEEEEeeeech
Q 019858 272 GHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRND-DGSYGSMRTVVHNQ 319 (335)
Q Consensus 272 ~HtdIvy~~~~p~wlp~~~~~RDlv~~RyWrR~~-DGsYvIl~~Sv~H~ 319 (335)
++.+|+|..+.+.| .+++||||+.+.|+... ||.|+|.+.|+.|+
T Consensus 84 ~~~~i~~~~~~~p~---pvs~Rdfv~~~~~~~~~~~~~~~i~~~s~~~~ 129 (195)
T cd08876 84 DNERSVYTVIDLPW---PVKDRDMVLRSTTEQDADDGSVTITLEAAPEA 129 (195)
T ss_pred CCcEEEEEEEeccc---ccCCceEEEEEEEEEcCCCCEEEEEeecCCcc
Confidence 99999999999654 38999999998888775 89999999999996
No 21
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=99.63 E-value=1.2e-15 Score=138.79 Aligned_cols=120 Identities=17% Similarity=0.251 Sum_probs=100.6
Q ss_pred cCCcEEEE-eecCeEEEEEecccCCCCccCccceEEeeeeecCHHHHHHHhh-ccCCCcccccceeeeeeEEEEEeCccc
Q 019858 198 RKHWRLLQ-CQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIFELVM-SMDGTRYEWDCSFQYGSLVEEVDGHTA 275 (335)
Q Consensus 198 ~~~W~l~~-~~nGlrif~e~~~~~~~~~~~~~~~kavgvV~aspe~IFe~lm-~~d~~R~eWD~~~~~~~vVE~iD~Htd 275 (335)
...|++.. -+||+.||....+. .+.++|+.|+|++|+++|++.|+ +++ .+.+||..+.+.++||++|++++
T Consensus 24 ~~~W~~~~~~~~gi~v~s~~~~~------~~k~~k~e~~i~~~~~~l~~~l~~d~e-~~~~W~~~~~~~~vl~~id~~~~ 96 (209)
T cd08905 24 QEGWKTEIVAENGDKVLSKVVPD------IGKVFRLEVVVDQPLDNLYSELVDRME-QMGEWNPNVKEVKILQRIGKDTL 96 (209)
T ss_pred ccCCEEEEecCCCCEEEEEEcCC------CCcEEEEEEEecCCHHHHHHHHHhchh-hhceecccchHHHHHhhcCCCce
Confidence 45799994 58999999865542 23799999999999999995555 666 58999999999999999999999
Q ss_pred EEEEEEeeCcccCcccCceeEEEEeeEecCCCcEEEEEeeeechhhhhhcc
Q 019858 276 ILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYGSMRTVVHNQDMYELTW 326 (335)
Q Consensus 276 Ivy~~~~p~wlp~~~~~RDlv~~RyWrR~~DGsYvIl~~Sv~H~~~~~~t~ 326 (335)
|+|. ....|..+.+++||||.+|+|++. +++|+++..|+.|+.++.+-.
T Consensus 97 i~y~-~~~p~p~~~vs~RD~V~~~~~~~~-~~~~~~~~~s~~~~~~P~~~~ 145 (209)
T cd08905 97 ITHE-VAAETAGNVVGPRDFVSVRCAKRR-GSTCVLAGMATHFGLMPEQKG 145 (209)
T ss_pred EEEE-EeccCCCCccCccceEEEEEEEEc-CCcEEEEEEeecCCCCCCCCC
Confidence 9998 656664355999999999999998 567788889999999986643
No 22
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=99.63 E-value=1.1e-15 Score=139.19 Aligned_cols=118 Identities=23% Similarity=0.334 Sum_probs=99.2
Q ss_pred cCCcEEEEeecCeEEEEEecccCCCCccCccceEEeeeee-cCHHHHHHHhhccCCCcccccceeeeeeEEEEEeCcccE
Q 019858 198 RKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVE-ASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAI 276 (335)
Q Consensus 198 ~~~W~l~~~~nGlrif~e~~~~~~~~~~~~~~~kavgvV~-aspe~IFe~lm~~d~~R~eWD~~~~~~~vVE~iD~HtdI 276 (335)
...|+++.-++|+.||....+ .+....+|++++++ +||++++++++|++ .|.+||..+.. ++|.++++++|
T Consensus 24 ~~~W~l~~~~~~i~Vy~r~~~-----~s~~~~~k~~~~~~~~s~~~~~~~l~D~~-~r~~Wd~~~~~--~~~~~~~~~~i 95 (207)
T cd08910 24 GAAWELLVESSGISIYRLLDE-----QSGLYEYKVFGVLEDCSPSLLADVYMDLE-YRKQWDQYVKE--LYEKECDGETV 95 (207)
T ss_pred CCCeEEEEecCCeEEEEeccC-----CCCcEEEEEEEEEcCCCHHHHHHHHhCHH-HHHHHHHHHHh--heeecCCCCEE
Confidence 356999999999999997654 23346899999999 69999999999998 69999999886 78989999999
Q ss_pred EEEEEeeCcccCcccCceeEEEEeeEec-CCC--cEEEEEeeeechhhhhhcc
Q 019858 277 LYHRLQLDWFPMFVWPRDLCYVRYWRRN-DDG--SYGSMRTVVHNQDMYELTW 326 (335)
Q Consensus 277 vy~~~~p~wlp~~~~~RDlv~~RyWrR~-~DG--sYvIl~~Sv~H~~~~~~t~ 326 (335)
+|+.++++| -+++||+|+.|.|+.. .+| .|+|+.+|+.||+++.+-.
T Consensus 96 ~y~~~k~Pw---Pvs~RD~V~~r~~~~~~~~~~~~~iv~~~s~~~p~~P~~~~ 145 (207)
T cd08910 96 IYWEVKYPF---PLSNRDYVYIRQRRDLDVEGRKIWVILARSTSLPQLPEKPG 145 (207)
T ss_pred EEEEEEcCC---CCCCceEEEEEEeccccCCCCeEEEEEecCCCCCCCCCCCC
Confidence 999999655 4999999999988743 344 4778889999999887643
No 23
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=99.58 E-value=7.2e-15 Score=134.95 Aligned_cols=95 Identities=22% Similarity=0.217 Sum_probs=85.9
Q ss_pred ccceEEeeeeecCHHHHHHHhhccCCCcccccceeeeeeEEEEEeCcccEEEEEEeeCcccCcccCceeEEEEeeEe-cC
Q 019858 227 SRAMKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRR-ND 305 (335)
Q Consensus 227 ~~~~kavgvV~aspe~IFe~lm~~d~~R~eWD~~~~~~~vVE~iD~HtdIvy~~~~p~wlp~~~~~RDlv~~RyWrR-~~ 305 (335)
-.++|+++.|+|+|++|...|++. |.+||..+.+++|||++|++++|+|+++.+.| -+++||+|++|.|+. .+
T Consensus 51 l~~~r~~~~i~a~~~~vl~~lld~---~~~Wd~~~~e~~vIe~ld~~~~I~Yy~~~~Pw---P~~~RD~V~~Rs~~~~~~ 124 (204)
T cd08908 51 LRLWRTTIEVPAAPEEILKRLLKE---QHLWDVDLLDSKVIEILDSQTEIYQYVQNSMA---PHPARDYVVLRTWRTNLP 124 (204)
T ss_pred cEEEEEEEEeCCCHHHHHHHHHhh---HHHHHHHhhheEeeEecCCCceEEEEEccCCC---CCCCcEEEEEEEEEEeCC
Confidence 458999999999999999999755 99999999999999999999999999999765 389999999999985 68
Q ss_pred CCcEEEEEeeeechhhhhhccc
Q 019858 306 DGSYGSMRTVVHNQDMYELTWR 327 (335)
Q Consensus 306 DGsYvIl~~Sv~H~~~~~~t~~ 327 (335)
+|+|+|...|++|+.++...-|
T Consensus 125 ~g~~~I~~~Sv~h~~~P~~~VR 146 (204)
T cd08908 125 KGACALLATSVDHDRAPVAGVR 146 (204)
T ss_pred CCeEEEEEeecCcccCCcCceE
Confidence 9999999999999999976434
No 24
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=99.57 E-value=8.1e-15 Score=135.06 Aligned_cols=116 Identities=16% Similarity=0.155 Sum_probs=95.3
Q ss_pred cCCcEEEEeecCeEEEEEecccCCCCccCccceEEeeeeecCHH-HHHHHhhccCCCcccccceeeeeeEEEEEeCcccE
Q 019858 198 RKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCE-EIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAI 276 (335)
Q Consensus 198 ~~~W~l~~~~nGlrif~e~~~~~~~~~~~~~~~kavgvV~aspe-~IFe~lm~~d~~R~eWD~~~~~~~vVE~iD~HtdI 276 (335)
...|......+|+.|+.+..+. ...-.+.|++..|.++|. .++++|.+ |+.||..+.+.++||+||+++||
T Consensus 26 ~kgW~~~~~~~~vev~~kk~~d----~~~l~lwk~s~ei~~~p~~vl~rvL~d----R~~WD~~m~e~~~Ie~Ld~n~dI 97 (205)
T cd08907 26 FKGWHSAPGPDNTELACKKVGD----GHPLRLWKVSTEVEAPPSVVLQRVLRE----RHLWDEDLLHSQVIEALENNTEV 97 (205)
T ss_pred cCCceeecCCCCcEEEEEeCCC----CCceEEEEEEEEecCCCHHHHHHHhhc----hhhhhHHHHhhhhheeecCCCEE
Confidence 4678888888999998875431 122248888888888555 45566663 99999999999999999999999
Q ss_pred EEEEEeeCcccCcccCceeEEEEeeEec-CCCcEEEEEeeeechhhhhh
Q 019858 277 LYHRLQLDWFPMFVWPRDLCYVRYWRRN-DDGSYGSMRTVVHNQDMYEL 324 (335)
Q Consensus 277 vy~~~~p~wlp~~~~~RDlv~~RyWrR~-~DGsYvIl~~Sv~H~~~~~~ 324 (335)
.|+.++ .|.-+++||||.+|.|+-. +.|.|+|+-+||+|++++-.
T Consensus 98 ~yY~~~---~~~p~p~RDfv~lRsW~~~l~~g~~iI~~~SV~H~~~pp~ 143 (205)
T cd08907 98 YHYVTD---SMAPHPRRDFVVLRMWRSDLPRGGCLLVSQSVDHDNPQLE 143 (205)
T ss_pred EEEEec---CCCCCCCceEEEEEEEccCCCCCCEEEEEecccCCcCCCC
Confidence 999999 5566899999999999854 67899999999999999865
No 25
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=99.57 E-value=1.8e-14 Score=118.17 Aligned_cols=99 Identities=20% Similarity=0.364 Sum_probs=75.2
Q ss_pred eeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCc---eEEeeCCcceecCceeEEEEEEecC
Q 019858 7 YEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGN---CRVEDRGLKTHHGHMVYVLSVYNKK 83 (335)
Q Consensus 7 ~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~---~rVed~Gre~~hg~~~yvf~iyn~~ 83 (335)
+||||.+.|...+ .-+++|||||+++.|.|||. |.+. .|.+.+.|+.+ +.|.+.-.....++..|.|.|...
T Consensus 1 KeG~L~K~g~~~~--k~wkkRwFvL~~~~L~Yyk~-~~d~-~~~G~I~L~~~~~~~~v~~~~~~~~~~~~~~~F~i~t~- 75 (103)
T cd01251 1 KEGFMEKTGPKHT--EGFKKRWFTLDDRRLMYFKD-PLDA-FAKGEVFLGSQEDGYEVREGLPPGTQGNHWYGVTLVTP- 75 (103)
T ss_pred CceeEEecCCCCC--CCceeEEEEEeCCEEEEECC-CCCc-CcCcEEEeeccccceeEeccCCccccccccceEEEEeC-
Confidence 5899999997532 22579999999999998875 4454 89999988754 356432111112344569999875
Q ss_pred CCcceEEEeecCHHHHHHHHHHHHHHHhh
Q 019858 84 EKYHRITMAAFNIQEALIWKEKIELVIDQ 112 (335)
Q Consensus 84 ~~~~~~~laa~s~eea~~W~~a~~~Ai~q 112 (335)
++++.|.|.|.+|+..||+||+.||++
T Consensus 76 --~Rty~l~a~s~~e~~~Wi~ai~~v~~~ 102 (103)
T cd01251 76 --ERKFLFACETEQDRREWIAAFQNVLSR 102 (103)
T ss_pred --CeEEEEECCCHHHHHHHHHHHHHHhcC
Confidence 899999999999999999999999764
No 26
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.54 E-value=6.6e-14 Score=108.11 Aligned_cols=91 Identities=26% Similarity=0.454 Sum_probs=72.6
Q ss_pred eeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEecCCCc
Q 019858 7 YEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEKY 86 (335)
Q Consensus 7 ~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~~~~~ 86 (335)
|||||++++... ..+++|||||+++.|.||+.+......|.+++.|+++...++.+ .-++|+|... ++
T Consensus 1 ~~G~L~k~~~~~---~~W~~r~~vl~~~~L~~~~~~~~~~~~~~~~i~l~~~~~~~~~~-------~~~~F~i~~~--~~ 68 (91)
T cd01246 1 VEGWLLKWTNYL---KGWQKRWFVLDNGLLSYYKNKSSMRGKPRGTILLSGAVISEDDS-------DDKCFTIDTG--GD 68 (91)
T ss_pred CeEEEEEecccC---CCceeeEEEEECCEEEEEecCccCCCCceEEEEeceEEEEECCC-------CCcEEEEEcC--CC
Confidence 799999998643 45779999999999999998764434899999997654333321 1578898753 44
Q ss_pred ceEEEeecCHHHHHHHHHHHHHH
Q 019858 87 HRITMAAFNIQEALIWKEKIELV 109 (335)
Q Consensus 87 ~~~~laa~s~eea~~W~~a~~~A 109 (335)
+.+.|.|.|.+|+..|+.||+.|
T Consensus 69 ~~~~~~a~s~~e~~~Wi~al~~a 91 (91)
T cd01246 69 KTLHLRANSEEERQRWVDALELA 91 (91)
T ss_pred CEEEEECCCHHHHHHHHHHHHhC
Confidence 89999999999999999999876
No 27
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=99.51 E-value=1.3e-13 Score=110.00 Aligned_cols=95 Identities=19% Similarity=0.373 Sum_probs=73.9
Q ss_pred ceeeeEEEeeec-ccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEecCC
Q 019858 6 VYEGWMVRYGRR-KIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKE 84 (335)
Q Consensus 6 ~~EGWly~~g~~-~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~~~ 84 (335)
|+||||++++.. .+....+++|||||+|+.|.|||.+. + ..|.+.+.|.+ |.|+.- .+. +..|+|.|.. +
T Consensus 1 ~~~GwL~kk~~~~g~~~k~WkkrwfvL~~~~L~yyk~~~-~-~~~~~~I~L~~-~~v~~~-~~~---~k~~~F~I~~--~ 71 (96)
T cd01260 1 DCDGWLWKRKKPGGFMGQKWARRWFVLKGTTLYWYRSKQ-D-EKAEGLIFLSG-FTIESA-KEV---KKKYAFKVCH--P 71 (96)
T ss_pred CceeEEEEecCCCCccccCceeEEEEEECCEEEEECCCC-C-CccceEEEccC-CEEEEc-hhc---CCceEEEECC--C
Confidence 589999999743 22466788999999999999998654 3 37889999955 566642 122 2468899963 4
Q ss_pred CcceEEEeecCHHHHHHHHHHHHHH
Q 019858 85 KYHRITMAAFNIQEALIWKEKIELV 109 (335)
Q Consensus 85 ~~~~~~laa~s~eea~~W~~a~~~A 109 (335)
+.+.+-|+|.|.||+..||+||..|
T Consensus 72 ~~~~~~f~a~s~~e~~~Wi~ai~~~ 96 (96)
T cd01260 72 VYKSFYFAAETLDDLSQWVNHLITA 96 (96)
T ss_pred CCcEEEEEeCCHHHHHHHHHHHHhC
Confidence 4589999999999999999999876
No 28
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=99.51 E-value=7.2e-14 Score=128.56 Aligned_cols=119 Identities=18% Similarity=0.310 Sum_probs=103.0
Q ss_pred cccCCcEEEEeecCeEEEEEecccCCCCccCccceEEeeeeecCHHHHHHHhhccCCCcccccceeeeeeEEEEEeCccc
Q 019858 196 FSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTA 275 (335)
Q Consensus 196 ~~~~~W~l~~~~nGlrif~e~~~~~~~~~~~~~~~kavgvV~aspe~IFe~lm~~d~~R~eWD~~~~~~~vVE~iD~Htd 275 (335)
+.++.|++....+|+.|..+..+. -.+.++|+-|+|+..|++|++.|-.+. .|.+||..+...++||+||..|.
T Consensus 20 ~~~~~Wkl~k~~~~~~v~~k~~~e-----f~gkl~R~Egvv~~~~~ev~d~v~~~~-~r~~Wd~~v~~~~Iie~Id~dt~ 93 (202)
T cd08902 20 ILEEEWRVAKKSKDVTVWRKPSEE-----FGGYLYKAQGVVEDVYNRIVDHIRPGP-YRLDWDSLMTSMDIIEEFEENCC 93 (202)
T ss_pred ccccCcEEEEeCCCEEEEEecCCc-----CCCceEEEEEEecCCHHHHHHHHhccc-chhcccchhhheeHhhhhcCCcE
Confidence 357899999999999999996531 235799999999999999999997754 59999999999999999999999
Q ss_pred EE-EEEEeeCcccCcccCceeEEEEeeEecCCCcEEEEEeeeechhhhh
Q 019858 276 IL-YHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYGSMRTVVHNQDMYE 323 (335)
Q Consensus 276 Iv-y~~~~p~wlp~~~~~RDlv~~RyWrR~~DGsYvIl~~Sv~H~~~~~ 323 (335)
|. |.+-.+.+ ..++|||||.+|++.|.+||. +.+--|++|+.++.
T Consensus 94 I~~yvt~~~~~--~iISpRDFVdv~~~~~~~d~~-~s~gvs~~~~~~pp 139 (202)
T cd08902 94 VMRYTTAGQLL--NIISPREFVDFSYTTQYEDGL-LSCGVSIEYEEARP 139 (202)
T ss_pred EEEEEcccCCc--CccCccceEEEEEEEEeCCCe-EEEEeeecCCCCCC
Confidence 98 65555543 679999999999999999997 66689999998875
No 29
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=99.45 E-value=1.2e-12 Score=100.27 Aligned_cols=99 Identities=21% Similarity=0.416 Sum_probs=79.6
Q ss_pred ceeeeEEEeeecccccccceeeEEEEecceeeecccCCCC-CCCccEEEEecCceEEeeCCcce--ecCceeEEEEEEec
Q 019858 6 VYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQD-NQVPIKTLLIDGNCRVEDRGLKT--HHGHMVYVLSVYNK 82 (335)
Q Consensus 6 ~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~-~~~Pirs~vid~~~rVed~Gre~--~hg~~~yvf~iyn~ 82 (335)
.+||||++++...-++ ++|||||.++.|.|||..... ...|...+-++ +|.|.+..... .....-++|.|...
T Consensus 2 ~~~G~L~~~~~~~~~w---k~r~~vL~~~~L~~~~~~~~~~~~~~~~~i~l~-~~~v~~~~~~~~~~~~~~~~~f~i~~~ 77 (104)
T PF00169_consen 2 IKEGWLLKKSSSRKKW---KKRYFVLRDSYLLYYKSSKDKSDSKPKGSIPLD-DCTVRPDPSSDFLSNKKRKNCFEITTP 77 (104)
T ss_dssp EEEEEEEEEESSSSSE---EEEEEEEETTEEEEESSTTTTTESSESEEEEGT-TEEEEEETSSTSTSTSSSSSEEEEEET
T ss_pred EEEEEEEEECCCCCCe---EEEEEEEECCEEEEEecCccccceeeeEEEEec-CceEEEcCccccccccCCCcEEEEEeC
Confidence 5899999999444444 599999999999999988742 36999999994 45777743321 23467788999987
Q ss_pred CCCcceEEEeecCHHHHHHHHHHHHHHH
Q 019858 83 KEKYHRITMAAFNIQEALIWKEKIELVI 110 (335)
Q Consensus 83 ~~~~~~~~laa~s~eea~~W~~a~~~Ai 110 (335)
.. ..+.|.|.|.+|+..|++||+.|+
T Consensus 78 ~~--~~~~~~~~s~~~~~~W~~~i~~~~ 103 (104)
T PF00169_consen 78 NG--KSYLFSAESEEERKRWIQAIQKAI 103 (104)
T ss_dssp TS--EEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CC--cEEEEEcCCHHHHHHHHHHHHHHh
Confidence 55 899999999999999999999995
No 30
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.40 E-value=3e-12 Score=107.51 Aligned_cols=98 Identities=19% Similarity=0.387 Sum_probs=75.3
Q ss_pred ceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEecCC-
Q 019858 6 VYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKE- 84 (335)
Q Consensus 6 ~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~~~- 84 (335)
++||||++.|... .-+++|||||+++.|.|||. +.+. .|.+++.|+ +|.|+.-... ..-+.|.|+...+
T Consensus 1 ~k~G~L~K~~~~~---~~WkkRwfvL~~~~L~yyk~-~~~~-~~~g~I~L~-~~~v~~~~~~----~~~~~F~i~~~~~~ 70 (125)
T cd01252 1 DREGWLLKQGGRV---KTWKRRWFILTDNCLYYFEY-TTDK-EPRGIIPLE-NVSIREVEDP----SKPFCFELFSPSDK 70 (125)
T ss_pred CcEEEEEEeCCCC---CCeEeEEEEEECCEEEEEcC-CCCC-CceEEEECC-CcEEEEcccC----CCCeeEEEECCccc
Confidence 4799999988654 34669999999999998874 4444 899999996 6667653111 2347888887654
Q ss_pred -----------------CcceEEEeecCHHHHHHHHHHHHHHHhhh
Q 019858 85 -----------------KYHRITMAAFNIQEALIWKEKIELVIDQH 113 (335)
Q Consensus 85 -----------------~~~~~~laa~s~eea~~W~~a~~~Ai~q~ 113 (335)
..+.+.|.|.|.+|+..|+.||+.+|.+.
T Consensus 71 ~~i~~~~~~~~~~~~~~~~~~~~~~A~s~~e~~~Wi~al~~~~~~~ 116 (125)
T cd01252 71 QQIKACKTESDGRVVEGNHSVYRISAANDEEMDEWIKSIKASISPN 116 (125)
T ss_pred cccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHhcC
Confidence 23677899999999999999999997543
No 31
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=99.39 E-value=3.8e-12 Score=101.37 Aligned_cols=96 Identities=26% Similarity=0.329 Sum_probs=72.3
Q ss_pred eeeeEEEeeecccccccceeeEEEEecc--eeeecccCCCCCCCccEEEEecCceEEeeCCc---ceecCceeEEEEEEe
Q 019858 7 YEGWMVRYGRRKIGRSFIHMRYFVLESR--LLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGL---KTHHGHMVYVLSVYN 81 (335)
Q Consensus 7 ~EGWly~~g~~~~g~q~~~~RyFVL~g~--~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gr---e~~hg~~~yvf~iyn 81 (335)
.||||.+.|...-. +++|||||.++ .|.|||.. .+ ..|.+++-|...+.|+.... ..-|...-+.|.|..
T Consensus 1 ~~G~L~K~g~~~k~---WkkRwFvL~~~~~~L~Yy~~~-~~-~~~~g~I~L~~~~~v~~~~~~~~~~~~~~~~~~f~i~t 75 (101)
T cd01235 1 CEGYLYKRGALLKG---WKPRWFVLDPDKHQLRYYDDF-ED-TAEKGCIDLAEVKSVNLAQPGMGAPKHTSRKGFFDLKT 75 (101)
T ss_pred CeEEEEEcCCCCCC---ccceEEEEECCCCEEEEecCC-CC-CccceEEEcceeEEEeecCCCCCCCCCCCCceEEEEEe
Confidence 48999999965444 45999999954 89988755 34 48999999988888875311 112233446677743
Q ss_pred cCCCcceEEEeecCHHHHHHHHHHHHHHH
Q 019858 82 KKEKYHRITMAAFNIQEALIWKEKIELVI 110 (335)
Q Consensus 82 ~~~~~~~~~laa~s~eea~~W~~a~~~Ai 110 (335)
+.+.+-|.|.|.||+..|++||+.+|
T Consensus 76 ---~~r~~~~~a~s~~e~~~Wi~ai~~~i 101 (101)
T cd01235 76 ---SKRTYNFLAENINEAQRWKEKIQQCI 101 (101)
T ss_pred ---CCceEEEECCCHHHHHHHHHHHHhhC
Confidence 56899999999999999999999874
No 32
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=99.39 E-value=2.5e-12 Score=105.99 Aligned_cols=99 Identities=16% Similarity=0.177 Sum_probs=78.1
Q ss_pred eeeeEEEee--ecccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCccee---cCceeEEEEEEe
Q 019858 7 YEGWMVRYG--RRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTH---HGHMVYVLSVYN 81 (335)
Q Consensus 7 ~EGWly~~g--~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~---hg~~~yvf~iyn 81 (335)
.||+|++++ ..++|..-+++|||||++..|.|||.++.....|.+++-|.....|++-..+.. +.+.-|.|.|.-
T Consensus 2 k~g~l~Kr~~~~~~~~~~nwKkRwFvL~~~~L~Yyk~~~~~~~~~kG~I~L~~~~~ve~~~~~~~~~~~~~~~~~F~i~t 81 (106)
T cd01238 2 LESILVKRSQQKKKTSPLNYKERLFVLTKSKLSYYEGDFEKRGSKKGSIDLSKIKCVETVKPEKNPPIPERFKYPFQVVH 81 (106)
T ss_pred cceeeeeeccCCCCCCCCCceeEEEEEcCCEEEEECCCcccccCcceeEECCcceEEEEecCCcCcccccccCccEEEEe
Confidence 589999996 444677678899999999999999987754457999999987777776433331 123458899976
Q ss_pred cCCCcceEEEeecCHHHHHHHHHHHHH
Q 019858 82 KKEKYHRITMAAFNIQEALIWKEKIEL 108 (335)
Q Consensus 82 ~~~~~~~~~laa~s~eea~~W~~a~~~ 108 (335)
. ++.+-|.|.|.+|...|++||+.
T Consensus 82 ~---~r~~yl~A~s~~er~~WI~ai~~ 105 (106)
T cd01238 82 D---EGTLYVFAPTEELRKRWIKALKQ 105 (106)
T ss_pred C---CCeEEEEcCCHHHHHHHHHHHHh
Confidence 3 57888999999999999999975
No 33
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=99.37 E-value=4.1e-12 Score=103.31 Aligned_cols=95 Identities=17% Similarity=0.193 Sum_probs=73.9
Q ss_pred CceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeC-CcceecCceeEEEEEEecC
Q 019858 5 VVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDR-GLKTHHGHMVYVLSVYNKK 83 (335)
Q Consensus 5 ~~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~-Gre~~hg~~~yvf~iyn~~ 83 (335)
+-++|||.+.|...- -+++|||||+++.|.|||.+. + ..|++.+-|. +|.|+.. +.+...| ..++|.|..
T Consensus 2 v~k~G~L~Kkg~~~k---~WkkRwfvL~~~~L~yyk~~~-~-~~~~~~I~L~-~~~v~~~~~~~~~~~-~~~~F~I~t-- 72 (100)
T cd01233 2 VSKKGYLNFPEETNS---GWTRRFVVVRRPYLHIYRSDK-D-PVERGVINLS-TARVEHSEDQAAMVK-GPNTFAVCT-- 72 (100)
T ss_pred cceeEEEEeeCCCCC---CcEEEEEEEECCEEEEEccCC-C-ccEeeEEEec-ccEEEEccchhhhcC-CCcEEEEEC--
Confidence 458999999997653 356999999999999998754 2 4899999996 7877643 2211111 246888854
Q ss_pred CCcceEEEeecCHHHHHHHHHHHHHH
Q 019858 84 EKYHRITMAAFNIQEALIWKEKIELV 109 (335)
Q Consensus 84 ~~~~~~~laa~s~eea~~W~~a~~~A 109 (335)
.++.+.|.|.|.+|+..||+||+.+
T Consensus 73 -~~rt~~~~A~s~~e~~~Wi~ai~~~ 97 (100)
T cd01233 73 -KHRGYLFQALSDKEMIDWLYALNPL 97 (100)
T ss_pred -CCCEEEEEcCCHHHHHHHHHHhhhh
Confidence 5789999999999999999999876
No 34
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.36 E-value=5.2e-12 Score=98.05 Aligned_cols=94 Identities=17% Similarity=0.306 Sum_probs=71.7
Q ss_pred eeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEecCCCc
Q 019858 7 YEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEKY 86 (335)
Q Consensus 7 ~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~~~~~ 86 (335)
|||||++.+... ...+++|||||+++.|.||+..+.....|..++.+ ..|.|+...... +.-++|.|....
T Consensus 1 k~G~L~kk~~~~--~~~W~kr~~~L~~~~l~~y~~~~~~~~~~~~~i~l-~~~~v~~~~~~~---~~~~~f~i~~~~--- 71 (94)
T cd01250 1 KQGYLYKRSSKS--NKEWKKRWFVLKNGQLTYHHRLKDYDNAHVKEIDL-RRCTVRHNGKQP---DRRFCFEVISPT--- 71 (94)
T ss_pred CcceEEEECCCc--CCCceEEEEEEeCCeEEEEcCCcccccccceEEec-cceEEecCcccc---CCceEEEEEcCC---
Confidence 699999987542 34577999999999999998877433467777777 456666532221 245799998643
Q ss_pred ceEEEeecCHHHHHHHHHHHHHH
Q 019858 87 HRITMAAFNIQEALIWKEKIELV 109 (335)
Q Consensus 87 ~~~~laa~s~eea~~W~~a~~~A 109 (335)
+.+.|.|.|.+|+.+|+.||++|
T Consensus 72 ~~~~f~a~s~~~~~~Wi~al~~~ 94 (94)
T cd01250 72 KTWHFQADSEEERDDWISAIQES 94 (94)
T ss_pred cEEEEECCCHHHHHHHHHHHhcC
Confidence 88999999999999999999864
No 35
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=99.36 E-value=1.6e-11 Score=91.73 Aligned_cols=99 Identities=19% Similarity=0.314 Sum_probs=80.1
Q ss_pred ceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCC-CCccEEEEecCceEEeeCCcceecCceeEEEEEEecCC
Q 019858 6 VYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDN-QVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKE 84 (335)
Q Consensus 6 ~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~-~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~~~ 84 (335)
.++|||+++... +.+-+++|||+|.++.|.+|+..+... ..|.+.+.|++. .|........ ...-++|.|..+..
T Consensus 2 ~~~G~l~~~~~~--~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~~-~v~~~~~~~~-~~~~~~f~l~~~~~ 77 (102)
T smart00233 2 IKEGWLYKKSGG--KKKSWKKRYFVLFNSTLLYYKSEKAKKDYKPKGSIDLSGI-TVREAPDPDS-AKKPHCFEIKTADR 77 (102)
T ss_pred ceeEEEEEeCCC--ccCCceEEEEEEECCEEEEEeCCCccccCCCceEEECCcC-EEEeCCCCcc-CCCceEEEEEecCC
Confidence 589999998865 566778999999999999999988764 689999999665 7766533321 23457888887644
Q ss_pred CcceEEEeecCHHHHHHHHHHHHHHH
Q 019858 85 KYHRITMAAFNIQEALIWKEKIELVI 110 (335)
Q Consensus 85 ~~~~~~laa~s~eea~~W~~a~~~Ai 110 (335)
..+.|.|.|.+|+..|+.+|+.++
T Consensus 78 --~~~~f~~~s~~~~~~W~~~i~~~~ 101 (102)
T smart00233 78 --RSYLLQAESEEEREEWVDALRKAI 101 (102)
T ss_pred --ceEEEEcCCHHHHHHHHHHHHHhh
Confidence 799999999999999999999884
No 36
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=99.35 E-value=7.7e-12 Score=100.94 Aligned_cols=90 Identities=18% Similarity=0.233 Sum_probs=69.8
Q ss_pred eeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEecCCCc
Q 019858 7 YEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEKY 86 (335)
Q Consensus 7 ~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~~~~~ 86 (335)
++|||++.|.---|++ +|||||++..|.|||.++.....|.+++-+..++.+.+... -..|.|.. ...
T Consensus 1 ~~G~L~K~~~~~k~Wk---~RwFvL~~g~L~Yyk~~~~~~~~~~G~I~L~~~~i~~~~~~-------~~~F~i~~--~~~ 68 (91)
T cd01247 1 TNGVLSKWTNYINGWQ---DRYFVLKEGNLSYYKSEAEKSHGCRGSIFLKKAIIAAHEFD-------ENRFDISV--NEN 68 (91)
T ss_pred CceEEEEeccccCCCc---eEEEEEECCEEEEEecCccCcCCCcEEEECcccEEEcCCCC-------CCEEEEEe--CCC
Confidence 5899999996555555 99999999999999988754456899999965544443211 24677753 235
Q ss_pred ceEEEeecCHHHHHHHHHHHHH
Q 019858 87 HRITMAAFNIQEALIWKEKIEL 108 (335)
Q Consensus 87 ~~~~laa~s~eea~~W~~a~~~ 108 (335)
+.+.|.|.|.+|...|++||+.
T Consensus 69 r~~~L~A~s~~e~~~Wi~al~~ 90 (91)
T cd01247 69 VVWYLRAENSQSRLLWMDSVVR 90 (91)
T ss_pred eEEEEEeCCHHHHHHHHHHHhh
Confidence 9999999999999999999975
No 37
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism]
Probab=99.35 E-value=2.7e-12 Score=119.29 Aligned_cols=123 Identities=21% Similarity=0.287 Sum_probs=107.4
Q ss_pred ccccCCcEEEEeecCeEEEEEecccCCCCccCccceEEeeeee-cCHHHHHHHhhccCCCcccccceeeeeeEEEEEe-C
Q 019858 195 AFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVE-ASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVD-G 272 (335)
Q Consensus 195 v~~~~~W~l~~~~nGlrif~e~~~~~~~~~~~~~~~kavgvV~-aspe~IFe~lm~~d~~R~eWD~~~~~~~vVE~iD-~ 272 (335)
.-+...|.++--+++..|+.-..+ .+-....|+.|+.+ +||+.+++..||.+ +|.+||..+.+.++||+.- -
T Consensus 25 ~~~~~~We~~~~k~~~~i~~q~~~-----~~g~~~Yk~~~vfeDvtp~~~~Dv~~D~e-YRkkWD~~vi~~e~ie~d~~t 98 (219)
T KOG2761|consen 25 CDAGQGWELVMDKSTPSIWRQRRP-----KTGLYEYKSRTVFEDVTPEIVRDVQWDDE-YRKKWDDMVIELETIEEDPVT 98 (219)
T ss_pred cCcccchhhhcccCCceEEEEccc-----CCCCEEEEEEEEEcCCCHHHHHHHHhhhH-HHHHHHHHhhhheeeeecCCC
Confidence 456678999999999999985433 11144899999885 59999999999998 7999999999999999984 7
Q ss_pred cccEEEEEEeeCcccCcccCceeEEEEeeEecCCCcEEEEEeeeechhhhhhcc
Q 019858 273 HTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYGSMRTVVHNQDMYELTW 326 (335)
Q Consensus 273 HtdIvy~~~~p~wlp~~~~~RDlv~~RyWrR~~DGsYvIl~~Sv~H~~~~~~t~ 326 (335)
.++|||+..+ +|+.|++||+|+.|.|+-.++-.|+|+-.||.|+.++++-+
T Consensus 99 g~~vv~w~~k---fP~p~~~RdYV~~Rr~~~~~~k~~~i~s~~v~h~s~P~~~~ 149 (219)
T KOG2761|consen 99 GTEVVYWVKK---FPFPMSNRDYVYVRRWWESDEKDYYIVSKSVQHPSYPPLKK 149 (219)
T ss_pred CceEEEEEEe---CCcccCCccEEEEEEEEecCCceEEEEEecccCCCcCCcCC
Confidence 9999999999 89999999999999999888888888889999999998873
No 38
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=99.34 E-value=3.4e-12 Score=115.67 Aligned_cols=113 Identities=12% Similarity=0.285 Sum_probs=98.1
Q ss_pred cCCcEEEEeecCeEEEEEecccCCCCccCccceEEeeeeecCHHHHHHHhhccCCCcccccceeeeeeEEEEEeCcccEE
Q 019858 198 RKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAIL 277 (335)
Q Consensus 198 ~~~W~l~~~~nGlrif~e~~~~~~~~~~~~~~~kavgvV~aspe~IFe~lm~~d~~R~eWD~~~~~~~vVE~iD~HtdIv 277 (335)
...|++..-.+|++||....+. +....+|+.|+|+++++.+.++|.+++ .+.+|+....++++++++|..+.|+
T Consensus 21 ~~~W~~~~~~~~i~v~~r~~~~-----~~~~~~k~e~~i~~~~~~~~~vl~d~~-~~~~W~p~~~~~~~l~~~~~~~~v~ 94 (215)
T cd08877 21 SDGWTLQKESEGIRVYYKFEPD-----GSLLSLRMEGEIDGPLFNLLALLNEVE-LYKTWVPFCIRSKKVKQLGRADKVC 94 (215)
T ss_pred CCCcEEeccCCCeEEEEEeCCC-----CCEEEEEEEEEecCChhHeEEEEehhh-hHhhhcccceeeEEEeecCCceEEE
Confidence 5679999999999999887652 224689999999999999999999997 5999999999999999999999999
Q ss_pred EEEEeeCcccCcccCceeEEEEeeEe---cCCCcEEEEEeeeechh
Q 019858 278 YHRLQLDWFPMFVWPRDLCYVRYWRR---NDDGSYGSMRTVVHNQD 320 (335)
Q Consensus 278 y~~~~p~wlp~~~~~RDlv~~RyWrR---~~DGsYvIl~~Sv~H~~ 320 (335)
|.+++++| -+++||+|+. .|.. ++||+++|+..|+.|+.
T Consensus 95 y~~~~~Pw---Pv~~RD~v~~-~~~~~~~~~~~~i~i~~~si~~~~ 136 (215)
T cd08877 95 YLRVDLPW---PLSNREAVFR-GFGVDRLEENGQIVILLKSIDDDP 136 (215)
T ss_pred EEEEeCce---EecceEEEEE-EEEEeeeccCCCEEEEEecCCCCc
Confidence 99999544 4899999986 3432 28999999999999875
No 39
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=99.34 E-value=1.3e-11 Score=102.19 Aligned_cols=90 Identities=21% Similarity=0.391 Sum_probs=73.1
Q ss_pred CceeeeEEEeeecccccccceeeEEEEecc------eeeecccCCCCC---CCccEEEEecCceEEeeCCcceecCceeE
Q 019858 5 VVYEGWMVRYGRRKIGRSFIHMRYFVLESR------LLAYYKKKPQDN---QVPIKTLLIDGNCRVEDRGLKTHHGHMVY 75 (335)
Q Consensus 5 ~~~EGWly~~g~~~~g~q~~~~RyFVL~g~------~l~~YK~~P~~~---~~Pirs~vid~~~rVed~Gre~~hg~~~y 75 (335)
+.++|||.+. --.|+|||||++. .|.|||....-. ..|.|++-++.|..|..+-. ..| =|
T Consensus 2 v~k~GyL~K~-------K~~kkRwFVLr~~~~~~p~~Leyyk~ek~~~~~~~~p~~vI~L~~c~~v~~~~d-~k~---~~ 70 (101)
T cd01257 2 VRKSGYLRKQ-------KSMHKRFFVLRAESSGGPARLEYYENEKKFLQKGSAPKRVIPLESCFNINKRAD-AKH---RH 70 (101)
T ss_pred ccEEEEEeEe-------cCcEeEEEEEecCCCCCCceEEEECChhhccccCCCceEEEEccceEEEeeccc-ccc---Ce
Confidence 5689999996 3467999999999 899999887532 48999999988888876422 222 28
Q ss_pred EEEEEecCCCcceEEEeecCHHHHHHHHHHHHH
Q 019858 76 VLSVYNKKEKYHRITMAAFNIQEALIWKEKIEL 108 (335)
Q Consensus 76 vf~iyn~~~~~~~~~laa~s~eea~~W~~a~~~ 108 (335)
+|+|+. .++.+-|+|+|.+|++.|++||.+
T Consensus 71 ~f~i~t---~dr~f~l~aese~E~~~Wi~~i~~ 100 (101)
T cd01257 71 LIALYT---RDEYFAVAAENEAEQDSWYQALLE 100 (101)
T ss_pred EEEEEe---CCceEEEEeCCHHHHHHHHHHHhh
Confidence 999987 448999999999999999999964
No 40
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.32 E-value=1.2e-11 Score=100.07 Aligned_cols=91 Identities=16% Similarity=0.237 Sum_probs=68.3
Q ss_pred eeeeEEEeeecccccccceeeEEEEec--ceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEecCC
Q 019858 7 YEGWMVRYGRRKIGRSFIHMRYFVLES--RLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKE 84 (335)
Q Consensus 7 ~EGWly~~g~~~~g~q~~~~RyFVL~g--~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~~~ 84 (335)
+.|||.+.|...+ ..=+++|||||++ +.|.|||.+. +. .|++++-|.+.+.+.+. .+ .-+.|.|..
T Consensus 1 l~GyL~K~g~~~~-~K~WkkRWFvL~~~~~~L~Yyk~~~-d~-~p~G~I~L~~~~~~~~~-~~-----~~~~F~i~t--- 68 (95)
T cd01265 1 LCGYLHKIEGKGP-LRGRRSRWFALDDRTCYLYYYKDSQ-DA-KPLGRVDLSGAAFTYDP-RE-----EKGRFEIHS--- 68 (95)
T ss_pred CcccEEEecCCCC-CcCceeEEEEEcCCCcEEEEECCCC-cc-cccceEECCccEEEcCC-CC-----CCCEEEEEc---
Confidence 3699999997544 3334699999984 5899887544 44 89999999664444332 22 135788865
Q ss_pred CcceEEEeecCHHHHHHHHHHHHHH
Q 019858 85 KYHRITMAAFNIQEALIWKEKIELV 109 (335)
Q Consensus 85 ~~~~~~laa~s~eea~~W~~a~~~A 109 (335)
.++.+.|.|.|.+|+..|++||+.+
T Consensus 69 ~~r~y~l~A~s~~e~~~Wi~al~~~ 93 (95)
T cd01265 69 NNEVIALKASSDKQMNYWLQALQSK 93 (95)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhh
Confidence 4789999999999999999999987
No 41
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=99.27 E-value=3.2e-11 Score=99.16 Aligned_cols=96 Identities=25% Similarity=0.339 Sum_probs=71.8
Q ss_pred eeeEEEeeeccc-ccccceeeEEEEecce-------eeecccCCCCCCCccEEEEecCceEEeeCCcce--ecCceeEEE
Q 019858 8 EGWMVRYGRRKI-GRSFIHMRYFVLESRL-------LAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKT--HHGHMVYVL 77 (335)
Q Consensus 8 EGWly~~g~~~~-g~q~~~~RyFVL~g~~-------l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~--~hg~~~yvf 77 (335)
||||.+.|.... +..-+++|||||+++- |.|||..+ + ..|.+++-|+. |.+.+.|... .+...-|+|
T Consensus 2 eGwL~K~~~~~~~~~~~WkrRwFvL~~~~l~~~~~~L~Yyk~~~-~-~k~~g~I~L~~-~~~v~~~~~~~~~~~~~~~~f 78 (108)
T cd01266 2 EGWLKKSPPYKLLFRTKWVRRYFVLHCGDRERNLFALEYYKTSR-K-FKLEFVIDLES-CSQVDPGLLCTAGNCIFGYGF 78 (108)
T ss_pred ceeeeeCCccccccccCcEEEEEEEeccccCCCcceEEEECCCC-C-CccceEEECCc-cEEEcccccccccCcccceEE
Confidence 899999987543 5566789999999875 58887543 3 48999999966 5554443221 112344788
Q ss_pred EEEecCCCcceEEEeecCHHHHHHHHHHHHHH
Q 019858 78 SVYNKKEKYHRITMAAFNIQEALIWKEKIELV 109 (335)
Q Consensus 78 ~iyn~~~~~~~~~laa~s~eea~~W~~a~~~A 109 (335)
.|.- ..+.+-|+|.|.||+..||+||.+.
T Consensus 79 ~i~t---~~r~y~l~A~s~ee~~~Wi~~I~~~ 107 (108)
T cd01266 79 DIET---IVRDLYLVAKNEEEMTLWVNCICKL 107 (108)
T ss_pred EEEe---CCccEEEEECCHHHHHHHHHHHHhh
Confidence 8873 5789999999999999999999753
No 42
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.24 E-value=5.8e-11 Score=98.69 Aligned_cols=98 Identities=17% Similarity=0.182 Sum_probs=75.4
Q ss_pred eeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCCCcc-EEEEecCceEEeeCCcceecCceeEEEEEEecCCC
Q 019858 7 YEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPI-KTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEK 85 (335)
Q Consensus 7 ~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pi-rs~vid~~~rVed~Gre~~hg~~~yvf~iyn~~~~ 85 (335)
.||||-+.|..=-.+--+++|||||+||.|.|||+++.. .|. +++.+..+..|..-....-...-.+.|.|...
T Consensus 2 ~~G~l~k~~g~~r~~K~WkrRwF~L~~~~L~y~K~~~~~--~~~~g~IdL~~~~sVk~~~~~~~~~~~~~~Fei~tp--- 76 (101)
T cd01264 2 IEGQLKEKKGRWRFIKRWKTRYFTLSGAQLLFQKGKSKD--DPDDCSIDLSKIRSVKAVAKKRRDRSLPKAFEIFTA--- 76 (101)
T ss_pred cceEEeecCccceeeecceeEEEEEeCCEEEEEeccCcc--CCCCceEEcccceEEeeccccccccccCcEEEEEcC---
Confidence 589999988753345567899999999999988877654 455 78999777777664322211223689999654
Q ss_pred cceEEEeecCHHHHHHHHHHHHHH
Q 019858 86 YHRITMAAFNIQEALIWKEKIELV 109 (335)
Q Consensus 86 ~~~~~laa~s~eea~~W~~a~~~A 109 (335)
++++-|.|.|.+|++.|+++|+.|
T Consensus 77 ~rt~~l~A~se~e~e~WI~~i~~a 100 (101)
T cd01264 77 DKTYILKAKDEKNAEEWLQCLNIA 100 (101)
T ss_pred CceEEEEeCCHHHHHHHHHHHHhh
Confidence 599999999999999999999988
No 43
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.24 E-value=5.4e-11 Score=99.12 Aligned_cols=94 Identities=18% Similarity=0.269 Sum_probs=74.2
Q ss_pred eeeeEEEeeecc------cccccceeeEEEEe-cceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEE
Q 019858 7 YEGWMVRYGRRK------IGRSFIHMRYFVLE-SRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSV 79 (335)
Q Consensus 7 ~EGWly~~g~~~------~g~q~~~~RyFVL~-g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~i 79 (335)
+.|||++.+..+ ...-=+++|||||+ +.+|.||++++.+. .|.+++-|..++.|.+- .+. .+ .-+.|+|
T Consensus 1 ~~g~l~~~~~~~~~~~~~~~~K~WkrRWFvL~~~~~L~y~~d~~~~~-~p~G~IdL~~~~~V~~~-~~~-~~-~~~~f~I 76 (104)
T cd01236 1 YCGWLLVAPDGTDFDNPVHRSKRWQRRWFILYDHGLLTYALDEMPTT-LPQGTIDMNQCTDVVDA-EAR-TG-QKFSICI 76 (104)
T ss_pred CcceeEEcCCCCcccccceeeccccceEEEEeCCCEEEEeeCCCCCc-ccceEEEccceEEEeec-ccc-cC-CccEEEE
Confidence 579999998774 45566789999997 68999888776555 89999999888888753 221 11 2568888
Q ss_pred EecCCCcceEEEeecCHHHHHHHHHHHH
Q 019858 80 YNKKEKYHRITMAAFNIQEALIWKEKIE 107 (335)
Q Consensus 80 yn~~~~~~~~~laa~s~eea~~W~~a~~ 107 (335)
-.. ++.+-|.|.|.||+..|+++|.
T Consensus 77 ~tp---~R~f~l~Aete~E~~~Wi~~l~ 101 (104)
T cd01236 77 LTP---DKEHFIKAETKEEISWWLNMLM 101 (104)
T ss_pred ECC---CceEEEEeCCHHHHHHHHHHHH
Confidence 544 6999999999999999999985
No 44
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.23 E-value=7e-11 Score=96.69 Aligned_cols=94 Identities=23% Similarity=0.377 Sum_probs=65.9
Q ss_pred CceeeeEEEeeecccccccceeeEEEEe-cceeeecccCCCCC---CCccEEEEecCceEEeeCCcceecCceeEEEEEE
Q 019858 5 VVYEGWMVRYGRRKIGRSFIHMRYFVLE-SRLLAYYKKKPQDN---QVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVY 80 (335)
Q Consensus 5 ~~~EGWly~~g~~~~g~q~~~~RyFVL~-g~~l~~YK~~P~~~---~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iy 80 (335)
+.+||||.+.|.. ..-+++|||||+ +..|.|||++|.+. ..|+....+.+ |.|... .. ..-+.|.|-
T Consensus 1 v~k~G~L~K~g~~---~~~Wk~R~f~L~~~~~l~~yk~~~~~~~~~~i~l~~~~v~~-~~~~~~-~~----~~~~~F~i~ 71 (102)
T cd01241 1 VVKEGWLHKRGEY---IKTWRPRYFLLKSDGSFIGYKEKPEDGDPFLPPLNNFSVAE-CQLMKT-ER----PRPNTFIIR 71 (102)
T ss_pred CcEEEEEEeecCC---CCCCeeEEEEEeCCCeEEEEecCCCccCccccccCCeEEee-eeeeec-cC----CCcceEEEE
Confidence 3589999999974 344569999999 67788899999655 45777777744 444321 11 123677776
Q ss_pred ecC---CCcceEEEeecCHHHHHHHHHHHHHH
Q 019858 81 NKK---EKYHRITMAAFNIQEALIWKEKIELV 109 (335)
Q Consensus 81 n~~---~~~~~~~laa~s~eea~~W~~a~~~A 109 (335)
... ..++ +|.|.|.||...||+||+.+
T Consensus 72 ~~~~~~~~~r--~f~a~s~ee~~eWi~ai~~v 101 (102)
T cd01241 72 CLQWTTVIER--TFHVESPEEREEWIHAIQTV 101 (102)
T ss_pred eccCCcccCE--EEEeCCHHHHHHHHHHHHhh
Confidence 221 1123 67799999999999999876
No 45
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=99.10 E-value=9.3e-10 Score=82.22 Aligned_cols=98 Identities=18% Similarity=0.279 Sum_probs=74.1
Q ss_pred eeeeEEEeeeccc-ccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEecCCC
Q 019858 7 YEGWMVRYGRRKI-GRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEK 85 (335)
Q Consensus 7 ~EGWly~~g~~~~-g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~~~~ 85 (335)
.+|||.+++.... +....++|||+|.++.|.+|+.++.....+ ....+ ..++|+...... +.-++|.|.+...+
T Consensus 1 ~~g~l~~~~~~~~~~~~~w~~~~~~l~~~~l~~~~~~~~~~~~~-~~~~l-~~~~v~~~~~~~---~~~~~F~i~~~~~~ 75 (99)
T cd00900 1 KEGYLLKLGSDDVSKGKRWKRRWFFLFDDGLLLYKSDDKKEIKP-GSIPL-SEISVEEDPDGS---DDPNCFAIVTKDRG 75 (99)
T ss_pred CccEEEEeCCCccccccCceeeEEEEECCEEEEEEcCCCCcCCC-CEEEc-cceEEEECCCCC---CCCceEEEECCCCC
Confidence 4799999997764 445566999999999999998877444221 45555 334466643322 34689999987557
Q ss_pred cceEEEeecCHHHHHHHHHHHHHH
Q 019858 86 YHRITMAAFNIQEALIWKEKIELV 109 (335)
Q Consensus 86 ~~~~~laa~s~eea~~W~~a~~~A 109 (335)
.+.+.|.|.|.+|+..|++||++|
T Consensus 76 ~~~~~~~~~~~~~~~~W~~al~~~ 99 (99)
T cd00900 76 RRVFVFQADSEEEAQEWVEALQQA 99 (99)
T ss_pred cEEEEEEcCCHHHHHHHHHHHhcC
Confidence 899999999999999999999875
No 46
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain. Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.07 E-value=1e-09 Score=92.76 Aligned_cols=98 Identities=18% Similarity=0.314 Sum_probs=77.1
Q ss_pred eeeeEEEeeeccccc-c--------------cceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCccee--
Q 019858 7 YEGWMVRYGRRKIGR-S--------------FIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTH-- 69 (335)
Q Consensus 7 ~EGWly~~g~~~~g~-q--------------~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~-- 69 (335)
+||||++++.-+.-. - =+.+|||||++..|.||+ +|.+ ..|.+.+++|.+..|+..+.+.+
T Consensus 1 keG~i~kr~g~~~~~~~~~~~~~~~~~~~~~~w~kRWFvlr~s~L~Y~~-~~~~-~~~~~vil~D~~f~v~~~~~~~~~~ 78 (121)
T cd01254 1 KEGYIMKRSGGKRSGSDDCSFGCCCFCRMCDRWQKRWFIVKESFLAYMD-DPSS-AQILDVILFDVDFKVNGGGKEDISL 78 (121)
T ss_pred CCceEEeCCCCCcCCcccccccccCCcccccCCcceeEEEeCCEEEEEc-CCCC-CceeeEEEEcCCccEEeCCcccccc
Confidence 489999886654422 1 247999999999999776 5544 48999999999999998666411
Q ss_pred ------cCceeEEEEEEecCCCcceEEEeecCHHHHHHHHHHHHHH
Q 019858 70 ------HGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELV 109 (335)
Q Consensus 70 ------hg~~~yvf~iyn~~~~~~~~~laa~s~eea~~W~~a~~~A 109 (335)
+...-+.|+|-| .+|+++|.|.|.+++..|++||+.|
T Consensus 79 ~~~~~~~~~~~~~~~i~t---~~R~~~l~a~s~~~~~~Wi~~i~~a 121 (121)
T cd01254 79 AVELKDITGLRHGLKITN---SNRSLKLKCKSSRKLKQWMASIEDA 121 (121)
T ss_pred cccccccCCCceEEEEEc---CCcEEEEEeCCHHHHHHHHHHHHhC
Confidence 113458999965 5899999999999999999999876
No 47
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.04 E-value=2.3e-09 Score=87.60 Aligned_cols=96 Identities=18% Similarity=0.173 Sum_probs=73.9
Q ss_pred ceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCC---CCccEEEEecCceEEeeCCcceecCceeEEEEEEec
Q 019858 6 VYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDN---QVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNK 82 (335)
Q Consensus 6 ~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~---~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~ 82 (335)
.+||||.+.+...-..+ .|||+|-+..|-|+|.+|... -.+...+-+ .++.|++.- +....+.|.|..+
T Consensus 3 ikeG~L~K~~~~~~~~k---~RyffLFnd~Ll~~~~~~~~~~~~y~~~~~i~l-~~~~v~~~~----~~~~~~~F~I~~~ 74 (101)
T cd01219 3 LKEGSVLKISSTTEKTE---ERYLFLFNDLLLYCVPRKMIGGSKFKVRARIDV-SGMQVCEGD----NLERPHSFLVSGK 74 (101)
T ss_pred ccceEEEEEecCCCCce---eEEEEEeCCEEEEEEcccccCCCcEEEEEEEec-ccEEEEeCC----CCCcCceEEEecC
Confidence 47999999997665555 999999888999999765322 245556666 557777631 2345788888554
Q ss_pred CCCcceEEEeecCHHHHHHHHHHHHHHHhh
Q 019858 83 KEKYHRITMAAFNIQEALIWKEKIELVIDQ 112 (335)
Q Consensus 83 ~~~~~~~~laa~s~eea~~W~~a~~~Ai~q 112 (335)
. +.+.+.|.|+||-.+||+||+.||++
T Consensus 75 ~---rsf~l~A~s~eEk~~W~~ai~~~i~~ 101 (101)
T cd01219 75 Q---RCLELQARTQKEKNDWVQAIFSIIDE 101 (101)
T ss_pred C---cEEEEEcCCHHHHHHHHHHHHHHhhC
Confidence 3 89999999999999999999999874
No 48
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.00 E-value=2.6e-09 Score=86.28 Aligned_cols=96 Identities=16% Similarity=0.138 Sum_probs=68.2
Q ss_pred eeeeEEEeee-----cccccccceeeEEEEecceeeecccCCCCCCCccE--EEEecCceEEeeC-CcceecCceeEEEE
Q 019858 7 YEGWMVRYGR-----RKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIK--TLLIDGNCRVEDR-GLKTHHGHMVYVLS 78 (335)
Q Consensus 7 ~EGWly~~g~-----~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pir--s~vid~~~rVed~-Gre~~hg~~~yvf~ 78 (335)
|||+|.++-. ++.+...+++|||||+|+.|.+||......+.+.+ .+-|+ ++.|+.- .-+ +--++|+
T Consensus 1 ~~g~l~rk~~~~~~g~~~~~~~Wk~r~~vL~~~~L~~ykd~~~~~~~~~~~~~i~l~-~~~i~~~~~~~----k~~~~F~ 75 (104)
T cd01253 1 MEGSLERKHELESGGKKASNRSWDNVYGVLCGQSLSFYKDEKMAAENVHGEPPVDLT-GAQCEVASDYT----KKKHVFR 75 (104)
T ss_pred CCceEeEEEEeecCCcccCCCCcceEEEEEeCCEEEEEecCcccccCCCCCCcEecc-CCEEEecCCcc----cCceEEE
Confidence 6899997644 55567788999999999999999966533222222 23343 5555432 111 2347899
Q ss_pred EEecCCCcceEEEeecCHHHHHHHHHHHHHH
Q 019858 79 VYNKKEKYHRITMAAFNIQEALIWKEKIELV 109 (335)
Q Consensus 79 iyn~~~~~~~~~laa~s~eea~~W~~a~~~A 109 (335)
|... ..+.+.|.|.|.||+.+|+.||+.|
T Consensus 76 l~~~--~~~~~~f~a~s~e~~~~Wi~aL~~~ 104 (104)
T cd01253 76 LRLP--DGAEFLFQAPDEEEMSSWVRALKSA 104 (104)
T ss_pred EEec--CCCEEEEECCCHHHHHHHHHHHhcC
Confidence 8864 6689999999999999999999754
No 49
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.97 E-value=3.7e-09 Score=78.30 Aligned_cols=94 Identities=23% Similarity=0.347 Sum_probs=73.8
Q ss_pred eeeeEEEeeecccccccceeeEEEEecceeeecccCCCCC-CCccEEEEecCceEEeeC-CcceecCceeEEEEEEecCC
Q 019858 7 YEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDN-QVPIKTLLIDGNCRVEDR-GLKTHHGHMVYVLSVYNKKE 84 (335)
Q Consensus 7 ~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~-~~Pirs~vid~~~rVed~-Gre~~hg~~~yvf~iyn~~~ 84 (335)
++|||++..... .+-.++||++|.++.|.+|+..+... ..|...+.|.+ +.|... +.+ +.-++|.|-...+
T Consensus 1 ~~G~l~~~~~~~--~~~w~~~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~-~~v~~~~~~~----~~~~~f~i~~~~~ 73 (96)
T cd00821 1 KEGYLLKKTGKL--RKGWKRRWFVLFNDLLLYYKKKSSKKSYKPKGSIPLSG-AEVEESPDDS----GRKNCFEIRTPDG 73 (96)
T ss_pred CcchhhhhhChh--hCCccEEEEEEECCEEEEEECCCCCcCCCCcceEEcCC-CEEEECCCcC----CCCcEEEEecCCC
Confidence 589999988665 34455999999999999998777542 58889999966 666653 222 2458888887644
Q ss_pred CcceEEEeecCHHHHHHHHHHHHHH
Q 019858 85 KYHRITMAAFNIQEALIWKEKIELV 109 (335)
Q Consensus 85 ~~~~~~laa~s~eea~~W~~a~~~A 109 (335)
+.+.|.|.|.+|+.+|+.+|+.|
T Consensus 74 --~~~~~~~~s~~~~~~W~~~l~~~ 96 (96)
T cd00821 74 --RSYLLQAESEEEREEWIEALQSA 96 (96)
T ss_pred --cEEEEEeCCHHHHHHHHHHHhcC
Confidence 89999999999999999999864
No 50
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.97 E-value=2.1e-09 Score=88.94 Aligned_cols=92 Identities=10% Similarity=0.108 Sum_probs=66.1
Q ss_pred eeeEEEeeecccccccceeeEEEEec----ceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEecC
Q 019858 8 EGWMVRYGRRKIGRSFIHMRYFVLES----RLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKK 83 (335)
Q Consensus 8 EGWly~~g~~~~g~q~~~~RyFVL~g----~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~~ 83 (335)
-|||.+.|.+. .--.++|||||.+ +.|.||+..+ + ..|++.+.+ .++.|.+. -++.- +..|.|.|++..
T Consensus 2 ~G~l~K~g~~~--~K~wK~rwF~l~~~~s~~~l~yf~~~~-~-~~p~gli~l-~~~~V~~v-~ds~~-~r~~cFel~~~~ 74 (98)
T cd01245 2 KGNLLKRTKSV--TKLWKTLYFALILDGSRSHESLLSSPK-K-TKPIGLIDL-SDAYLYPV-HDSLF-GRPNCFQIVERA 74 (98)
T ss_pred CCccccCCCCc--ccccceeEEEEecCCCCceEEEEcCCC-C-CCccceeec-cccEEEEc-ccccc-CCCeEEEEecCC
Confidence 49999988531 3446799999998 9999776544 3 489985444 77777763 11111 224999999986
Q ss_pred CCcceEEEeecCHHHHHHHHHHHHH
Q 019858 84 EKYHRITMAAFNIQEALIWKEKIEL 108 (335)
Q Consensus 84 ~~~~~~~laa~s~eea~~W~~a~~~ 108 (335)
.| ..+.|+|.+ ||+++||++|+.
T Consensus 75 ~~-~~y~~~a~~-~er~~Wi~~l~~ 97 (98)
T cd01245 75 LP-TVYYSCRSS-EERDKWIESLQA 97 (98)
T ss_pred CC-eEEEEeCCH-HHHHHHHHHHhc
Confidence 65 566777777 999999999975
No 51
>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain. Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.97 E-value=2.9e-09 Score=91.25 Aligned_cols=103 Identities=20% Similarity=0.314 Sum_probs=71.5
Q ss_pred CceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCC--CCccEEEEecCceEEee--CCcceecCceeEEEEEE
Q 019858 5 VVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDN--QVPIKTLLIDGNCRVED--RGLKTHHGHMVYVLSVY 80 (335)
Q Consensus 5 ~~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~--~~Pirs~vid~~~rVed--~Gre~~hg~~~yvf~iy 80 (335)
++|.|+|....... |..-+++|||||+|++|.||| +|.+. ..|++++-|..++.+.- --|+...+.--|.+++.
T Consensus 1 ~~~~GfL~~~q~~~-~~k~W~RRWFvL~g~~L~y~k-~p~d~~~~~Plg~I~L~~c~~~~v~~~~r~~c~Rp~tF~i~~~ 78 (122)
T cd01263 1 VEYHGFLTMFEDTS-GFGAWHRRWCALEGGEIKYWK-YPDDEKRKGPTGLIDLSTCTSSEGASAVRDICARPNTFHLDVW 78 (122)
T ss_pred CccceeEEEEeccC-CCCCceEEEEEEeCCEEEEEc-CCCccccCCceEEEEhhhCcccccccCChhhcCCCCeEEEEEe
Confidence 46899999766443 788899999999999999665 55553 68999999966555332 22333333334555544
Q ss_pred ecC---------------CCcceEEEeecCHHHHHHHHHHHHHH
Q 019858 81 NKK---------------EKYHRITMAAFNIQEALIWKEKIELV 109 (335)
Q Consensus 81 n~~---------------~~~~~~~laa~s~eea~~W~~a~~~A 109 (335)
... ...-.+-|+|.|.||...|++||..|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~r~~~~lsaDt~eer~~W~~ain~~ 122 (122)
T cd01263 79 RPKMETDDETLVSQCRRGIERLRVMLSADTKEERQTWLSLLNST 122 (122)
T ss_pred cccccccccceeeccCCceeEEEEEEecCCHHHHHHHHHHHhcC
Confidence 222 11223678999999999999999864
No 52
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=4.8e-09 Score=101.53 Aligned_cols=99 Identities=19% Similarity=0.323 Sum_probs=76.5
Q ss_pred CCceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEecC
Q 019858 4 KVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKK 83 (335)
Q Consensus 4 ~~~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~~ 83 (335)
.++.||||++.|.|+ ---+.+|||||..|+|. |.+--.|+ +|-+-+.+ +|.-|.. .---+-.|.|.||+.+
T Consensus 259 npdREGWLlKlgg~r--vktWKrRWFiLtdNCLY-YFe~tTDK-EPrGIIpL-eNlsir~----VedP~kP~cfEly~ps 329 (395)
T KOG0930|consen 259 NPDREGWLLKLGGNR--VKTWKRRWFILTDNCLY-YFEYTTDK-EPRGIIPL-ENLSIRE----VEDPKKPNCFELYIPS 329 (395)
T ss_pred CccccceeeeecCCc--ccchhheeEEeecceee-eeeeccCC-CCCcceec-cccceee----ccCCCCCCeEEEecCC
Confidence 367899999999873 34567999999999997 66666666 77766666 5554432 2222568999999998
Q ss_pred CCcce-------------------EEEeecCHHHHHHHHHHHHHHHh
Q 019858 84 EKYHR-------------------ITMAAFNIQEALIWKEKIELVID 111 (335)
Q Consensus 84 ~~~~~-------------------~~laa~s~eea~~W~~a~~~Ai~ 111 (335)
++..+ +++.|-|.||...||++++.+|-
T Consensus 330 ~~gq~IKACKTe~DGRvVEG~H~vYrIsA~~~Ee~~~Wi~sI~a~is 376 (395)
T KOG0930|consen 330 NKGQVIKACKTEADGRVVEGNHSVYRISAPTPEEKDEWIKSIKAAIS 376 (395)
T ss_pred CCcCeeeeecccCCceeEeccceEEEeeCCCHHHHHHHHHHHHHHhc
Confidence 86655 46889999999999999999975
No 53
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.89 E-value=1.9e-08 Score=82.87 Aligned_cols=94 Identities=21% Similarity=0.296 Sum_probs=72.4
Q ss_pred ceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCC--CCccEEEEecCceEEeeCCcceecCceeEEEEEEecC
Q 019858 6 VYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDN--QVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKK 83 (335)
Q Consensus 6 ~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~--~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~~ 83 (335)
..||||.++.+.. .+ .|||+|=...|=|+++.+.+. -.+.+.+-+ .++.|++..-+ .+..+.|.||.+
T Consensus 3 ikEG~L~K~~~k~--~~---~R~~FLFnD~LlY~~~~~~~~~~y~~~~~i~L-~~~~V~~~~~~---~~~~~~F~I~~~- 72 (99)
T cd01220 3 IRQGCLLKLSKKG--LQ---QRMFFLFSDLLLYTSKSPTDQNSFRILGHLPL-RGMLTEESEHE---WGVPHCFTIFGG- 72 (99)
T ss_pred eeEEEEEEEeCCC--Cc---eEEEEEccceEEEEEeecCCCceEEEEEEEEc-CceEEeeccCC---cCCceeEEEEcC-
Confidence 3799999998643 33 777777777777788777544 256777777 88889874221 246789999954
Q ss_pred CCcceEEEeecCHHHHHHHHHHHHHHHh
Q 019858 84 EKYHRITMAAFNIQEALIWKEKIELVID 111 (335)
Q Consensus 84 ~~~~~~~laa~s~eea~~W~~a~~~Ai~ 111 (335)
.+.++|.|.|.+|...||++|+.||+
T Consensus 73 --~ks~~l~A~s~~Ek~~Wi~~i~~aI~ 98 (99)
T cd01220 73 --QCAITVAASTRAEKEKWLADLSKAIA 98 (99)
T ss_pred --CeEEEEECCCHHHHHHHHHHHHHHhh
Confidence 57899999999999999999999986
No 54
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.88 E-value=1.3e-08 Score=85.71 Aligned_cols=91 Identities=18% Similarity=0.295 Sum_probs=72.4
Q ss_pred eecccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEecC-CCcceEEEee
Q 019858 15 GRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKK-EKYHRITMAA 93 (335)
Q Consensus 15 g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~~-~~~~~~~laa 93 (335)
+..++.+-=.++|||+|+|+.|+|||.++..+..|+..+.+ .+|.|... .++-.+ -|.+.+-... ++.+.+-|.|
T Consensus 11 ~~~~~~~K~~KrrwF~lk~~~L~YyK~kee~~~~p~i~lnl-~gcev~~d--v~~~~~-kf~I~l~~ps~~~~r~y~l~c 86 (106)
T cd01237 11 KPKKLTLKGYKQYWFTFRDTSISYYKSKEDSNGAPIGQLNL-KGCEVTPD--VNVAQQ-KFHIKLLIPTAEGMNEVWLRC 86 (106)
T ss_pred CcchhhhhhheeEEEEEeCCEEEEEccchhcCCCCeEEEec-CceEEccc--cccccc-ceEEEEecCCccCCeEEEEEC
Confidence 34455555567999999999999999988777899999999 77777752 111112 3888888764 6678999999
Q ss_pred cCHHHHHHHHHHHHHH
Q 019858 94 FNIQEALIWKEKIELV 109 (335)
Q Consensus 94 ~s~eea~~W~~a~~~A 109 (335)
.|.++-++||.|++.|
T Consensus 87 dsEeqya~Wmaa~rla 102 (106)
T cd01237 87 DNEKQYAKWMAACRLA 102 (106)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999999999
No 55
>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C.
Probab=98.87 E-value=1.1e-08 Score=85.28 Aligned_cols=94 Identities=18% Similarity=0.418 Sum_probs=52.6
Q ss_pred eeeeEEEeeecccccccceeeEEEEe-cceeeecccCCCCC-------CCccEEEE---ecC---ceEEee----CCcce
Q 019858 7 YEGWMVRYGRRKIGRSFIHMRYFVLE-SRLLAYYKKKPQDN-------QVPIKTLL---IDG---NCRVED----RGLKT 68 (335)
Q Consensus 7 ~EGWly~~g~~~~g~q~~~~RyFVL~-g~~l~~YK~~P~~~-------~~Pirs~v---id~---~~rVed----~Gre~ 68 (335)
+|||||+.+.- +|-. +++|||||+ ++.|.|||. |.+. +.+.+.+. ++. ...+.. +-.+.
T Consensus 1 k~G~l~K~~~~-~~kg-Wk~RwFiL~k~~~L~YyK~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (112)
T PF15413_consen 1 KEGYLYKWGNK-FGKG-WKKRWFILRKDGVLSYYKI-PRDKKDVRIIGEESSRVIRKGDWSISRRSSRIQGIKDKNPFGE 77 (112)
T ss_dssp EEEEEEE--TT-S-S---EEEEEEEE-TTEEEEESS--------------TT-SB-SEEEE---GGGT-EEEES-T--SS
T ss_pred CCceEEEecCC-CCcC-ccccEEEEEeCCEEEEeec-ccccccccccccchhceEeecccCcccccccccccccCCcccC
Confidence 69999998854 4433 459999999 999999998 3221 11222111 111 111111 22334
Q ss_pred ecCceeEEEEEEecCCCcceEEEeecCHHHHHHHHHHHHHH
Q 019858 69 HHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELV 109 (335)
Q Consensus 69 ~hg~~~yvf~iyn~~~~~~~~~laa~s~eea~~W~~a~~~A 109 (335)
+|..++.+ ...++++-|-|.|.||-..|++||++|
T Consensus 78 ~~~~~~~i------~T~~kt~~l~~~t~~d~~~Wi~aL~~~ 112 (112)
T PF15413_consen 78 IHLKVFSI------FTPTKTFHLRCETREDRYDWIEALQEA 112 (112)
T ss_dssp -SSEEEEE------E-SS-EEEEEESSHHHHHHHHHHHHH-
T ss_pred cCCCCcEE------ECCCcEEEEEECCHHHHHHHHHHHHhC
Confidence 44444444 346889999999999999999999986
No 56
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.83 E-value=2e-08 Score=84.21 Aligned_cols=96 Identities=16% Similarity=0.305 Sum_probs=72.0
Q ss_pred eeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCcce-ecCceeEEEEEEecC--
Q 019858 7 YEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKT-HHGHMVYVLSVYNKK-- 83 (335)
Q Consensus 7 ~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~-~hg~~~yvf~iyn~~-- 83 (335)
.-|||-.....-+ .-=++.|||||..+.|.+||..- + .+|-.-+.+ +|++|-+. |. .-++. ++|.|||..
T Consensus 3 rkgwl~~~n~~~m-~ggsK~~WFVLt~~~L~wykd~e-e-KE~kyilpL-dnLk~Rdv--e~gf~sk~-~~FeLfnpd~r 75 (110)
T cd01256 3 RKGWLSISNVGIM-KGGSKDYWFVLTSESLSWYKDDE-E-KEKKYMLPL-DGLKLRDI--EGGFMSRN-HKFALFYPDGR 75 (110)
T ss_pred eeeeEEeecccee-cCCCcceEEEEecceeeeecccc-c-ccccceeec-cccEEEee--cccccCCC-cEEEEEcCccc
Confidence 4699977543322 22357999999999999998553 3 377777778 78888774 22 12223 999999664
Q ss_pred ---CCcceEEEeecCHHHHHHHHHHHHHH
Q 019858 84 ---EKYHRITMAAFNIQEALIWKEKIELV 109 (335)
Q Consensus 84 ---~~~~~~~laa~s~eea~~W~~a~~~A 109 (335)
...+|++|+|.|.||.++||-+|-.|
T Consensus 76 nvykd~k~lel~~~~~e~vdswkasflra 104 (110)
T cd01256 76 NVYKDYKQLELGCETLEEVDSWKASFLRA 104 (110)
T ss_pred ccccchheeeecCCCHHHHHHHHHHHHhc
Confidence 45689999999999999999999988
No 57
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.80 E-value=3.5e-08 Score=81.39 Aligned_cols=83 Identities=17% Similarity=0.122 Sum_probs=65.6
Q ss_pred ccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEecCCCcceEEEeecCHH
Q 019858 18 KIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQ 97 (335)
Q Consensus 18 ~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~~~~~~~~~laa~s~e 97 (335)
+.+ --+++|||||.++-|.|||... ..|++++-|..-.-|+..+..... .-|+|.|... ++.+-|-|.|.+
T Consensus 16 ~~~-~n~KkRwF~Lt~~~L~Y~k~~~---~~~~g~I~L~~i~~ve~v~~~~~~--~~~~fqivt~---~r~~yi~a~s~~ 86 (98)
T cd01244 16 KKV-LHFKKRYFQLTTTHLSWAKDVQ---CKKSALIKLAAIKGTEPLSDKSFV--NVDIITIVCE---DDTMQLQFEAPV 86 (98)
T ss_pred ccC-cCCceeEEEECCCEEEEECCCC---CceeeeEEccceEEEEEcCCcccC--CCceEEEEeC---CCeEEEECCCHH
Confidence 455 4578999999999999998543 479999999666667766554432 2489999774 479999999999
Q ss_pred HHHHHHHHHHHH
Q 019858 98 EALIWKEKIELV 109 (335)
Q Consensus 98 ea~~W~~a~~~A 109 (335)
|+..|++||+.+
T Consensus 87 E~~~Wi~al~k~ 98 (98)
T cd01244 87 EATDWLNALEKQ 98 (98)
T ss_pred HHHHHHHHHhcC
Confidence 999999999864
No 58
>PF15409 PH_8: Pleckstrin homology domain
Probab=98.70 E-value=3.8e-08 Score=80.45 Aligned_cols=83 Identities=20% Similarity=0.451 Sum_probs=57.0
Q ss_pred eeEEEeeecccccccceeeEEEE--ecceeeecccCCCCC---CCccEEEEecCceEEeeCCcceecCceeEEEEEEecC
Q 019858 9 GWMVRYGRRKIGRSFIHMRYFVL--ESRLLAYYKKKPQDN---QVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKK 83 (335)
Q Consensus 9 GWly~~g~~~~g~q~~~~RyFVL--~g~~l~~YK~~P~~~---~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~~ 83 (335)
|||.+++++++ |=+++||||| +.-.|.||+.+.... ..||+.++|.-+. ..+++ .| .+
T Consensus 1 G~llKkrr~~l--qG~~kRyFvL~~~~G~LsYy~~~~~~~~rGsi~v~~a~is~~~----~~~~I---------~i-ds- 63 (89)
T PF15409_consen 1 GWLLKKRRKPL--QGWHKRYFVLDFEKGTLSYYRNQNSGKLRGSIDVSLAVISANK----KSRRI---------DI-DS- 63 (89)
T ss_pred CcceeeccccC--CCceeEEEEEEcCCcEEEEEecCCCCeeEeEEEccceEEEecC----CCCEE---------EE-Ec-
Confidence 89999987764 5555999999 999999998554322 4556555553321 11222 12 22
Q ss_pred CCcceEEEeecCHHHHHHHHHHHHHH
Q 019858 84 EKYHRITMAAFNIQEALIWKEKIELV 109 (335)
Q Consensus 84 ~~~~~~~laa~s~eea~~W~~a~~~A 109 (335)
+...+-|=|.|.+|...|+.||+.|
T Consensus 64 -g~~i~hLKa~s~~~f~~Wv~aL~~a 88 (89)
T PF15409_consen 64 -GDEIWHLKAKSQEDFQRWVSALQKA 88 (89)
T ss_pred -CCeEEEEEcCCHHHHHHHHHHHHhc
Confidence 3445666799999999999999987
No 59
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.40 E-value=3.1e-06 Score=72.06 Aligned_cols=96 Identities=16% Similarity=0.207 Sum_probs=70.5
Q ss_pred eeeeEEEeee-------cccccccceeeEEEEecceeeecccCCCCC-----CCccEEEEecCce-EEeeCCcceecCce
Q 019858 7 YEGWMVRYGR-------RKIGRSFIHMRYFVLESRLLAYYKKKPQDN-----QVPIKTLLIDGNC-RVEDRGLKTHHGHM 73 (335)
Q Consensus 7 ~EGWly~~g~-------~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~-----~~Pirs~vid~~~-rVed~Gre~~hg~~ 73 (335)
+||+|+++-. -++|..++++||.||+|+.|..||+.-... +.+-..+-|.+.. .|.- ...+-
T Consensus 2 ~~g~l~RK~~~~~~~kk~~~~~R~Wk~~y~vL~g~~L~~yKDe~~~~~~~~~~~~~~~Isi~~a~~~ia~-----dy~Kr 76 (117)
T cd01230 2 KHGALMRKVHADPDCRKTPFGKRSWKMFYGILRGLVLYLQKDEHKPGKSLSETELKNAISIHHALATRAS-----DYSKK 76 (117)
T ss_pred CCcEEEEEEEecCCCccCCCCCCcceEEEEEEECCEEEEEccCcccccccccccccceEEeccceeEeec-----cccCC
Confidence 5899998741 234678999999999999999999885311 1223455564433 3332 23356
Q ss_pred eEEEEEEecCCCcceEEEeecCHHHHHHHHHHHHHH
Q 019858 74 VYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELV 109 (335)
Q Consensus 74 ~yvf~iyn~~~~~~~~~laa~s~eea~~W~~a~~~A 109 (335)
-+||+|-. ...+.+-|-|.|.||+.+|+.+|..|
T Consensus 77 ~~VF~L~~--~~g~~~lfqA~~~ee~~~Wi~~I~~~ 110 (117)
T cd01230 77 PHVFRLRT--ADWREFLFQTSSLKELQSWIERINVV 110 (117)
T ss_pred CcEEEEEc--CCCCEEEEECCCHHHHHHHHHHHHHH
Confidence 67888876 46688999999999999999999988
No 60
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.
Probab=98.23 E-value=3.5e-06 Score=79.44 Aligned_cols=89 Identities=18% Similarity=0.357 Sum_probs=78.4
Q ss_pred cceEEeeeeecCHHHHHHHhhccCCCccc-ccceeeeeeEEEEEeCc--------ccEEEEEEeeCcccCcccCceeEEE
Q 019858 228 RAMKAVGVVEASCEEIFELVMSMDGTRYE-WDCSFQYGSLVEEVDGH--------TAILYHRLQLDWFPMFVWPRDLCYV 298 (335)
Q Consensus 228 ~~~kavgvV~aspe~IFe~lm~~d~~R~e-WD~~~~~~~vVE~iD~H--------tdIvy~~~~p~wlp~~~~~RDlv~~ 298 (335)
-|-++.|+|..+|..|-|.+||.++ ..+ .++-...+.+++.|+-- ..++|-+++. +.+.+.+|||+++
T Consensus 60 eASR~~glV~m~~~~lVe~lmD~~k-W~~~Fp~iv~~a~tl~vistg~~g~~~G~lqlmyael~~--pSpLVp~Re~~fL 136 (229)
T cd08875 60 EASRACGLVMMNAIKLVEILMDVNK-WSELFPGIVSKAKTLQVISTGNGGNRNGTLQLMYAELQV--PSPLVPTREFYFL 136 (229)
T ss_pred EEEeeeEEEecCHHHHHHHHhChhh-hhhhhhhhcceeeEEEEeeCCCCCCCCceehhhhhhccc--CcccccCCeEEEE
Confidence 4669999999999999999998875 444 67799999999999544 6789999986 4678999999999
Q ss_pred EeeEecCCCcEEEEEeeeech
Q 019858 299 RYWRRNDDGSYGSMRTVVHNQ 319 (335)
Q Consensus 299 RyWrR~~DGsYvIl~~Sv~H~ 319 (335)
||=..-+||+++||-.|+.|.
T Consensus 137 Ryc~~l~dG~w~VvdvSld~~ 157 (229)
T cd08875 137 RYCKQLEDGLWAVVDVSIDGV 157 (229)
T ss_pred EEEEEeCCCeEEEEEEeeccc
Confidence 999999999999999999986
No 61
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=97.85 E-value=0.00012 Score=61.63 Aligned_cols=97 Identities=19% Similarity=0.231 Sum_probs=59.9
Q ss_pred eeeeEEEeee-----ccc--ccccceeeEEEEecceeeecccCC--C----------CCCCccEEEEecCceEEeeCCcc
Q 019858 7 YEGWMVRYGR-----RKI--GRSFIHMRYFVLESRLLAYYKKKP--Q----------DNQVPIKTLLIDGNCRVEDRGLK 67 (335)
Q Consensus 7 ~EGWly~~g~-----~~~--g~q~~~~RyFVL~g~~l~~YK~~P--~----------~~~~Pirs~vid~~~rVed~Gre 67 (335)
+||||+++-. .+. +..-++.=|.||+|..|.+||... . .+..|+.++-| .+|..+.. .
T Consensus 2 keG~l~RK~~~~~~gkk~~~~~R~Wk~~y~vL~g~~L~~~k~~~~~~~~~~~~~~~~~~~~p~~~i~L-~~a~a~~a--~ 78 (119)
T PF15410_consen 2 KEGILMRKHELESGGKKASRSKRSWKQVYAVLQGGQLYFYKDEKSPASSTPPDIQSVENAKPDSSISL-HHALAEIA--S 78 (119)
T ss_dssp -EEEEEEEEEEECTTCC---S---EEEEEEEEETTEEEEESSHHHHCCT-BS---SS--E-----EE--TT-EEEEE--T
T ss_pred ceEEEEEEEEEcCCCCCcCCCCCCccEEeEEEECCEEEEEccCcccccCCcccccccccCcceeEEEe-cceEEEeC--c
Confidence 6999999522 223 555677889999999999999832 1 12356777888 45555541 1
Q ss_pred eecCceeEEEEEEecCCCcceEEEeecCHHHHHHHHHHHHHH
Q 019858 68 THHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELV 109 (335)
Q Consensus 68 ~~hg~~~yvf~iyn~~~~~~~~~laa~s~eea~~W~~a~~~A 109 (335)
. +-+--+||+|- .....++-|-|.|.||+..|+.+|.-+
T Consensus 79 d-Y~Kr~~VFrL~--~~dg~e~Lfqa~~~~~m~~Wi~~IN~~ 117 (119)
T PF15410_consen 79 D-YTKRKNVFRLR--TADGSEYLFQASDEEEMNEWIDAINYA 117 (119)
T ss_dssp T-BTTCSSEEEEE---TTS-EEEEE-SSHHHHHHHHHHHHHH
T ss_pred c-cccCCeEEEEE--eCCCCEEEEECCCHHHHHHHHHHHhhh
Confidence 1 22456788886 456889999999999999999999876
No 62
>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis. During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex
Probab=97.71 E-value=0.00054 Score=58.23 Aligned_cols=99 Identities=17% Similarity=0.323 Sum_probs=67.4
Q ss_pred eeeEEEeeecc--cccccceeeEEEEecceeeec--ccCCCCC---CCccEEEEecCceEEeeCCcceecCc----eeEE
Q 019858 8 EGWMVRYGRRK--IGRSFIHMRYFVLESRLLAYY--KKKPQDN---QVPIKTLLIDGNCRVEDRGLKTHHGH----MVYV 76 (335)
Q Consensus 8 EGWly~~g~~~--~g~q~~~~RyFVL~g~~l~~Y--K~~P~~~---~~Pirs~vid~~~rVed~Gre~~hg~----~~yv 76 (335)
-.|||++.++. .+..=.|.|||-|..+....| ..+|... ..=.+++.|++=..|.|.- .+--|. --+.
T Consensus 12 G~~l~Ky~r~~~~~~~~~~h~R~fwv~~~~~~L~Ws~~~p~~~~~~~~~~~~i~I~~v~~V~~~~-~~~~~~~~~~~~~s 90 (123)
T PF12814_consen 12 GEWLYKYTRKGRSGISEKPHRRYFWVDPYTRTLYWSSSNPKSENPSESKAKSIRIESVTEVKDGN-PSPPGLKKPDHNKS 90 (123)
T ss_pred ccEEEEEcccccCccCCCcEEEEEEEeCCCCEEEecCCCCCccccccccccceEEeeeEEecCCC-CCCccccccccceE
Confidence 35999988776 223467999999999655544 4445433 3345778887777777641 111111 2344
Q ss_pred EEEEecCCCcceEEEeecCHHHHHHHHHHHHHHH
Q 019858 77 LSVYNKKEKYHRITMAAFNIQEALIWKEKIELVI 110 (335)
Q Consensus 77 f~iyn~~~~~~~~~laa~s~eea~~W~~a~~~Ai 110 (335)
|.|. ...+.|+|.|.|.|+++-|+.||+-.|
T Consensus 91 i~i~---t~~R~L~l~a~s~~~~~~W~~aL~~L~ 121 (123)
T PF12814_consen 91 IIIV---TPDRSLDLTAPSRERHEIWFNALRYLL 121 (123)
T ss_pred EEEE---cCCeEEEEEeCCHHHHHHHHHHHHHHh
Confidence 5544 446899999999999999999998764
No 63
>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.56 E-value=0.00042 Score=59.58 Aligned_cols=95 Identities=19% Similarity=0.287 Sum_probs=64.3
Q ss_pred eeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeC-CcceecCceeEEEEEEecCCC
Q 019858 7 YEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDR-GLKTHHGHMVYVLSVYNKKEK 85 (335)
Q Consensus 7 ~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~-Gre~~hg~~~yvf~iyn~~~~ 85 (335)
+||||+|+-..---+- ++|++|+.|.+.||+..-.. .|.|.+-+.+=+.|+.. |--...+...+.|.|--+
T Consensus 2 kEGWmVHyT~~d~~rK---RhYWrLDsK~Itlf~~e~~s--kyyKeIPLsEIl~V~~~~~~~~~~~~~~hcFEi~T~--- 73 (117)
T cd01239 2 KEGWMVHYTSSDNRRK---KHYWRLDSKAITLYQEESGS--RYYKEIPLAEILSVSSNNGDSVLAKHPPHCFEIRTT--- 73 (117)
T ss_pred ccceEEEEecCcccee---eeEEEecCCeEEEEEcCCCC--eeeEEeehHHheEEeccCCCcCCCCCCCcEEEEEec---
Confidence 6999999876554444 89999999999999986543 56666666666677653 322234566777776531
Q ss_pred cceEE--------------------EeecCHHHHHHHHHHHHHH
Q 019858 86 YHRIT--------------------MAAFNIQEALIWKEKIELV 109 (335)
Q Consensus 86 ~~~~~--------------------laa~s~eea~~W~~a~~~A 109 (335)
+..+= ......+-|..|-.||++|
T Consensus 74 ~~vY~VG~~~~~~~~~~~~~~~~~~~sg~g~~~a~~We~aI~qA 117 (117)
T cd01239 74 TNVYFVGGEDYHAFSGGPPKKIPPSDSGRGSDNAQSWETAIRQA 117 (117)
T ss_pred CEEEEecccccccCCCcccCCCCcccccchhHHHHHHHHHHhcC
Confidence 11111 2334677889999999876
No 64
>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=97.53 E-value=8e-05 Score=74.63 Aligned_cols=97 Identities=24% Similarity=0.370 Sum_probs=69.5
Q ss_pred CceeeeEEEeeecccccccceeeEEEEe--cceeeecccCCCCC---CCccEEEEecCce-EEeeCCcceecCceeEEEE
Q 019858 5 VVYEGWMVRYGRRKIGRSFIHMRYFVLE--SRLLAYYKKKPQDN---QVPIKTLLIDGNC-RVEDRGLKTHHGHMVYVLS 78 (335)
Q Consensus 5 ~~~EGWly~~g~~~~g~q~~~~RyFVL~--g~~l~~YK~~P~~~---~~Pirs~vid~~~-rVed~Gre~~hg~~~yvf~ 78 (335)
+..||||.++|..-- .+|.|||+|. |.++- ||++|.+. ..|+---.|-+|- |-.++-|- +++-|=|
T Consensus 15 vvkEgWlhKrGE~Ik---nWRpRYF~l~~DG~~~G-yr~kP~~~~~~p~pLNnF~v~~cq~m~~erPrP----ntFiiRc 86 (516)
T KOG0690|consen 15 VVKEGWLHKRGEHIK---NWRPRYFLLFNDGTLLG-YRSKPKEVQPTPEPLNNFMVRDCQTMKTERPRP----NTFIIRC 86 (516)
T ss_pred hHHhhhHhhcchhhh---cccceEEEEeeCCceEe-eccCCccCCCCcccccchhhhhhhhhhccCCCC----ceEEEEe
Confidence 458999999997543 4669999995 77887 99999886 5788776664443 33344333 3566666
Q ss_pred EEecCCCcceEEEeecCHHHHHHHHHHHHHHHh
Q 019858 79 VYNKKEKYHRITMAAFNIQEALIWKEKIELVID 111 (335)
Q Consensus 79 iyn~~~~~~~~~laa~s~eea~~W~~a~~~Ai~ 111 (335)
+-.+.--+| +|.+.|++|-..|++|++.+-+
T Consensus 87 LQWTTVIER--TF~ves~~eRq~W~~AIq~vsn 117 (516)
T KOG0690|consen 87 LQWTTVIER--TFYVESAEERQEWIEAIQAVSN 117 (516)
T ss_pred eeeeeeeee--eeecCCHHHHHHHHHHHHHHhh
Confidence 655443333 6889999999999999997643
No 65
>cd01234 PH_CADPS CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS is a calcium-dependent activator involved in secretion. It contains a central PH domain that binds to phosphoinositide 4,5 bisphosphate containing liposomes. However, membrane association may also be mediated by binding to phosphatidlyserine via general electrostatic interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.45 E-value=0.00032 Score=59.76 Aligned_cols=95 Identities=19% Similarity=0.339 Sum_probs=66.3
Q ss_pred ceeeeEEEeeecccccccceeeEEEEecc-----eeeecccCCCCCCCccEEEEecCceEEeeCCcceec----------
Q 019858 6 VYEGWMVRYGRRKIGRSFIHMRYFVLESR-----LLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHH---------- 70 (335)
Q Consensus 6 ~~EGWly~~g~~~~g~q~~~~RyFVL~g~-----~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~h---------- 70 (335)
.++|||++.|.+. +-=+++|||||.|- .+..|+++. .+|-..+.+|+. .|.= .+...
T Consensus 3 k~sGyL~k~Gg~~--~KkWKKRwFvL~qvsQYtfamcsy~ekk---s~P~e~~qldGy-TvDy--~~~~~~~~~~~~~~~ 74 (117)
T cd01234 3 KHCGYLYAIGKNV--WKKWKKRFFVLVQVSQYTFAMCSYREKK---AEPTEFIQLDGY-TVDY--MPESDPDPNSELSLQ 74 (117)
T ss_pred ceeEEEEeccchh--hhhhheeEEEEEchhHHHHHHHhhhhhc---CCchhheeecce-EEec--cCCCCCCcccccccc
Confidence 3899999999643 34467999999964 233477665 366667778544 3432 22222
Q ss_pred CceeEEEEEEecCCCcceEEEeecCHHHHHHHHHHHHHHHhh
Q 019858 71 GHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQ 112 (335)
Q Consensus 71 g~~~yvf~iyn~~~~~~~~~laa~s~eea~~W~~a~~~Ai~q 112 (335)
|+-+| +|.-...+.+.||+.+..|---|++|+=.|-+|
T Consensus 75 gg~~f----f~avkegd~~~fa~~de~~r~lwvqa~yratgq 112 (117)
T cd01234 75 GGRHF----FNAVKEGDELKFATDDENERHLWVQAMYRATGQ 112 (117)
T ss_pred cchhh----hheeccCcEEEEeccchHHHHHHHHHHHHHcCc
Confidence 33332 466688999999999999999999999999444
No 66
>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain. Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.44 E-value=0.0033 Score=53.50 Aligned_cols=98 Identities=16% Similarity=0.137 Sum_probs=72.9
Q ss_pred eeeeEEEeeecccccccceeeEEEEecceeeecccCCCCC-CCccEEEEecCceEEeeC--Cccee-cCceeEEEEEEec
Q 019858 7 YEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDN-QVPIKTLLIDGNCRVEDR--GLKTH-HGHMVYVLSVYNK 82 (335)
Q Consensus 7 ~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~-~~Pirs~vid~~~rVed~--Gre~~-hg~~~yvf~iyn~ 82 (335)
++|=|.++..++.-.| .|+|.|=.++|=|=|++-..+ .--.|--+.=..|.|.|. |++.. +..+-++|.|||.
T Consensus 4 ~~Gel~~~s~~~g~~q---~R~~FLFD~~LI~CKkd~~r~~~~~yKgri~l~~~~I~d~~Dg~~~~~~~~~knafkl~~~ 80 (109)
T cd01224 4 LQGEATRQKQNKGWNS---SRVLFLFDHQMVLCKKDLIRRDHLYYKGRIDLDRCEVVNIRDGKMFSSGHTIKNSLKIYSE 80 (109)
T ss_pred EeeeEEEEecccCCcc---cEEEEEecceEEEEecccccCCcEEEEEEEEcccEEEEECCCCccccCCceeEEEEEEEEc
Confidence 6777777775544345 899999888888777643222 344555555588888886 76653 3357789999997
Q ss_pred CCCcceEEEeecCHHHHHHHHHHHHH
Q 019858 83 KEKYHRITMAAFNIQEALIWKEKIEL 108 (335)
Q Consensus 83 ~~~~~~~~laa~s~eea~~W~~a~~~ 108 (335)
.++.-+.|-|.|+||-.+||+||..
T Consensus 81 -~~~~~~~f~~Kt~e~K~~Wm~a~~~ 105 (109)
T cd01224 81 -STDEWYLFSFKSAERKHRWLSAFAL 105 (109)
T ss_pred -CCCeEEEEEECCHHHHHHHHHHHHH
Confidence 6677899999999999999999975
No 67
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.26 E-value=0.0045 Score=51.86 Aligned_cols=97 Identities=16% Similarity=0.113 Sum_probs=64.4
Q ss_pred ceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCC-CccEEEEecCceEEeeCCcceecCceeEEEEEEecCC
Q 019858 6 VYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQ-VPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKE 84 (335)
Q Consensus 6 ~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~-~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~~~ 84 (335)
.+||=|.++- +-+.+ .|||+|=...|=|=+..+..+. ..-..+-+ .++.|++..-+ ..+...|.|.++
T Consensus 5 i~eG~L~K~~--rk~~~---~R~ffLFnD~LvY~~~~~~~~~~~~~~~i~L-~~~~v~~~~d~---~~~~n~f~I~~~-- 73 (104)
T cd01218 5 VGEGVLTKMC--RKKPK---QRQFFLFNDILVYGNIVISKKKYNKQHILPL-EGVQVESIEDD---GIERNGWIIKTP-- 73 (104)
T ss_pred EecCcEEEee--cCCCc---eEEEEEecCEEEEEEeecCCceeeEeeEEEc-cceEEEecCCc---ccccceEEEecC--
Confidence 4788888877 34445 6899998888874222222220 11112233 55666653211 235678999885
Q ss_pred CcceEEEeecCHHHHHHHHHHHHHHHhhhh
Q 019858 85 KYHRITMAAFNIQEALIWKEKIELVIDQHQ 114 (335)
Q Consensus 85 ~~~~~~laa~s~eea~~W~~a~~~Ai~q~~ 114 (335)
.+...+.|.|++|-..||++|++||++..
T Consensus 74 -~kSf~v~A~s~~eK~eWl~~i~~ai~~~l 102 (104)
T cd01218 74 -TKSFAVYAATETEKREWMLHINKCVTDLL 102 (104)
T ss_pred -CeEEEEEcCCHHHHHHHHHHHHHHHHHHh
Confidence 56889999999999999999999998753
No 68
>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.24 E-value=0.0041 Score=53.93 Aligned_cols=102 Identities=17% Similarity=0.116 Sum_probs=72.2
Q ss_pred CceeeeEEEeeec--ccccccceeeEEEEecceeeecccCCCCC----CCccEEEEe-cCceEEeeCC-cc---eecCce
Q 019858 5 VVYEGWMVRYGRR--KIGRSFIHMRYFVLESRLLAYYKKKPQDN----QVPIKTLLI-DGNCRVEDRG-LK---THHGHM 73 (335)
Q Consensus 5 ~~~EGWly~~g~~--~~g~q~~~~RyFVL~g~~l~~YK~~P~~~----~~Pirs~vi-d~~~rVed~G-re---~~hg~~ 73 (335)
..|||||=.-..+ |-|++ ++|.||.+.-|+.|-..+... .+|.-.+-+ |+-+-|..-. -+ .-....
T Consensus 2 t~~EGwvkvP~~~~~krGW~---r~~vVv~~~Kl~lYd~e~~k~~~p~~~~~~vLdlrD~~fsV~~VtasDvi~a~~kDi 78 (122)
T cd01243 2 TAYEGHVKIPKPGGVKKGWQ---RALVVVCDFKLFLYDIAEDRASQPSVVISQVLDMRDPEFSVSSVLESDVIHASKKDI 78 (122)
T ss_pred ccceeeEeccCCCCcccCce---EEEEEEeCCEEEEEeCCccccCCccCceeEEEEcCCCCEEEEEecHHHccccCcccC
Confidence 4699999654442 34888 999999999999897544322 355555666 6677775421 11 112367
Q ss_pred eEEEEEEecC----CCcceEEEeecCHHHHHHHHHHHHHH
Q 019858 74 VYVLSVYNKK----EKYHRITMAAFNIQEALIWKEKIELV 109 (335)
Q Consensus 74 ~yvf~iyn~~----~~~~~~~laa~s~eea~~W~~a~~~A 109 (335)
.|+|.|-.+- -....+-|-|.|..|-.+|..||++.
T Consensus 79 P~If~I~~~~~~~~~~~~~~~~lA~s~~eK~kWV~aL~~l 118 (122)
T cd01243 79 PCIFRVTTSQISASSSKCSTLMLADTEEEKSKWVGALSEL 118 (122)
T ss_pred CeEEEEEEecccCCCCccEEEEEeCCchHHHHHHHHHHHH
Confidence 8999998642 34577889999999999999999986
No 69
>KOG1739 consensus Serine/threonine protein kinase GPBP [Signal transduction mechanisms; Defense mechanisms]
Probab=97.17 E-value=0.00013 Score=75.21 Aligned_cols=125 Identities=15% Similarity=0.300 Sum_probs=94.6
Q ss_pred ccccCCcEEEEeecCeEEEEEecccCCCCccCccceEEeeeeec-CHHHHHHHhhccCCCcccccceeeeeeEEEEEeCc
Q 019858 195 AFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEA-SCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGH 273 (335)
Q Consensus 195 v~~~~~W~l~~~~nGlrif~e~~~~~~~~~~~~~~~kavgvV~a-spe~IFe~lm~~d~~R~eWD~~~~~~~vVE~iD~H 273 (335)
+-.-..|++|.=..-.++|.-.-+..+... -.+||...|.+ |+.++..+.-+++ .|-+|++.++.-+|||+|-+.
T Consensus 399 ~g~d~nwqlFaeegemkmy~re~eeng~~~---Dplka~hav~gvta~e~chyf~~~~-~rndwettle~~~vve~is~d 474 (611)
T KOG1739|consen 399 VGGDANWQLFAEEGEMKMYRREVEENGIVL---DPLKATHAVKGVTAHEVCHYFWNVD-VRNDWETTLENFHVVETISDD 474 (611)
T ss_pred ccccchhhhhcccCCccccceeeccCCccc---CccccchhhcchhHHHHHHHHcChh-hhcchhhhhhhceeeeeecCC
Confidence 333444888877766666654433211111 15666654444 9999999999998 699999999999999999999
Q ss_pred ccEEEEEEeeCcccCcccCceeEEEEeeEecC------CCcEEEEEeeeechhhhhhcc
Q 019858 274 TAILYHRLQLDWFPMFVWPRDLCYVRYWRRND------DGSYGSMRTVVHNQDMYELTW 326 (335)
Q Consensus 274 tdIvy~~~~p~wlp~~~~~RDlv~~RyWrR~~------DGsYvIl~~Sv~H~~~~~~t~ 326 (335)
+-|+|.+-+-.|. .++||.+|+--=|+-+ -.+||||..||.|.+++-+.+
T Consensus 475 ~~~~~qthkrvwp---asqrd~lf~shirki~~~~e~gad~wivcn~s~~~a~~pl~n~ 530 (611)
T KOG1739|consen 475 AIIIYQTHKRVWP---ASQRDVLFLSHIRKIPALTENGADTWIVCNFSVDHASAPLNNR 530 (611)
T ss_pred eEEEEecccccCC---CCcchhHHHHHHhhcccccCCCCceEEEecCccccccCccCCc
Confidence 9999999998883 5799998876656532 257999999999999987763
No 70
>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.11 E-value=0.0063 Score=52.08 Aligned_cols=101 Identities=20% Similarity=0.300 Sum_probs=69.1
Q ss_pred ceeeeEEEeeec----ccccccceeeEEEEecceeeecccCCCCC-CCccEEEEecCceEEeeC-Cccee---cCceeEE
Q 019858 6 VYEGWMVRYGRR----KIGRSFIHMRYFVLESRLLAYYKKKPQDN-QVPIKTLLIDGNCRVEDR-GLKTH---HGHMVYV 76 (335)
Q Consensus 6 ~~EGWly~~g~~----~~g~q~~~~RyFVL~g~~l~~YK~~P~~~-~~Pirs~vid~~~rVed~-Gre~~---hg~~~yv 76 (335)
.|||||=.-..+ +.|++ ++|.||.+.-|..|-...... ..|.-.+=+|.-+-|..- --+-+ -....++
T Consensus 1 ~lEGwlsvP~~~~~~~k~gW~---r~yvVv~~~Kl~lYd~e~~~~~~~p~~vldl~~~fhv~~V~asDVi~a~~kDiP~I 77 (112)
T cd01242 1 RMEGWLSLPNRTNKSRKPGWK---KQYVVVSSRKILFYNDEQDKENSTPSMILDIDKLFHVRPVTQGDVYRADAKEIPKI 77 (112)
T ss_pred CcceeEEccCCCCccccCCce---EEEEEEeCCEEEEEecCccccCCCcEEEEEccceeeeecccHHHeeecCcccCCeE
Confidence 389999766552 46888 999999999999886444222 445554444432222211 00011 1357899
Q ss_pred EEEEecCCCcceEEEeecCHHHHHHHHHHHHHHH
Q 019858 77 LSVYNKKEKYHRITMAAFNIQEALIWKEKIELVI 110 (335)
Q Consensus 77 f~iyn~~~~~~~~~laa~s~eea~~W~~a~~~Ai 110 (335)
|.|--. +.++.+-|-|.|.+|-.+|..||..-|
T Consensus 78 F~I~~~-~~~~~lllLA~s~~ek~kWV~~L~~~~ 110 (112)
T cd01242 78 FQILYA-NEARDLLLLAPQTDEQNKWVSRLVKKI 110 (112)
T ss_pred EEEEeC-CccceEEEEeCCchHHHHHHHHHHHhc
Confidence 999875 557999999999999999999997654
No 71
>PF15408 PH_7: Pleckstrin homology domain
Probab=97.06 E-value=0.00025 Score=58.66 Aligned_cols=93 Identities=13% Similarity=0.192 Sum_probs=69.0
Q ss_pred eeeEEEeeecccccccceeeEEEEecceeeecccCCCCC--CCccEEEEecCceEEeeCCcceecCceeEEEEEEecCCC
Q 019858 8 EGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDN--QVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEK 85 (335)
Q Consensus 8 EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~--~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~~~~ 85 (335)
||+||+..-..| ++||.||.|+++-||-+|.... .--+++-++ ..-+|+ |-|..-.--+-+|-|.-....
T Consensus 1 EGYLY~~E~~si-----~rRF~~L~~K~~~~~~~KGG~~L~sF~L~~s~~-s~Pm~~--~~~A~~N~Gi~A~G~L~~~~~ 72 (104)
T PF15408_consen 1 EGYLYRDEDSSI-----QRRFVMLRSKQFNMYEDKGGQYLCSFQLSSSVV-SHPMVN--FSQAVPNLGINAFGFLMYSPS 72 (104)
T ss_pred CCeEEEeccchH-----HHHHHhhhhceeEEecccCCceeeeeehhhhhh-hccccc--ccccCCCCCeeEEEEEEecCC
Confidence 799999875554 4999999999999998887654 334455555 444454 344443334666777777788
Q ss_pred cceEEEeecCHHHHHHHHHHHHH
Q 019858 86 YHRITMAAFNIQEALIWKEKIEL 108 (335)
Q Consensus 86 ~~~~~laa~s~eea~~W~~a~~~ 108 (335)
.+++++=|.|.|-+.+|++++..
T Consensus 73 ~~~~~~FA~S~~~~~~Wi~~mN~ 95 (104)
T PF15408_consen 73 RRHVQCFASSKKVCQSWIQVMNS 95 (104)
T ss_pred cchhhhhhhHHHHHHHHHHHhcC
Confidence 89999999999999999998853
No 72
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain. Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.49 E-value=0.048 Score=46.44 Aligned_cols=98 Identities=17% Similarity=0.210 Sum_probs=65.8
Q ss_pred ceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCC--------CCccEEEEecCceEEeeCCcceecCceeEEE
Q 019858 6 VYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDN--------QVPIKTLLIDGNCRVEDRGLKTHHGHMVYVL 77 (335)
Q Consensus 6 ~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~--------~~Pirs~vid~~~rVed~Gre~~hg~~~yvf 77 (335)
.+||=|.++...+-.-| .|||+|=.++|=|=|.+..-. .-=+|..+-=..+.|.|..- +...-+.|
T Consensus 5 I~EG~L~ki~~~~~~~q---~R~~FLFd~~Li~CK~~~~~~~~~g~~~~~y~~k~~~~l~~~~V~d~~d---~~~~knaF 78 (112)
T cd01261 5 IMEGTLTRVGPSKKAKH---ERHVFLFDGLMVLCKSNHGQPRLPGASSAEYRLKEKFFMRKVDINDKPD---SSEYKNAF 78 (112)
T ss_pred cccCcEEEEecccCCcc---eEEEEEecCeEEEEEeccCcccccccccceEEEEEEEeeeeeEEEEcCC---CcccCceE
Confidence 47899998887664455 899999999887666544211 01122222224455555311 12346789
Q ss_pred EEEecCCCcceEEEeecCHHHHHHHHHHHHHHHh
Q 019858 78 SVYNKKEKYHRITMAAFNIQEALIWKEKIELVID 111 (335)
Q Consensus 78 ~iyn~~~~~~~~~laa~s~eea~~W~~a~~~Ai~ 111 (335)
.|.++. .+.+.|-|.|+||-.+||+||..||.
T Consensus 79 ~I~~~~--~~s~~l~Akt~eeK~~Wm~~l~~~~~ 110 (112)
T cd01261 79 EIILKD--GNSVIFSAKNAEEKNNWMAALISVQT 110 (112)
T ss_pred EEEcCC--CCEEEEEECCHHHHHHHHHHHHHHhc
Confidence 998763 45799999999999999999999853
No 73
>PLN02866 phospholipase D
Probab=96.49 E-value=0.022 Score=63.80 Aligned_cols=118 Identities=15% Similarity=0.146 Sum_probs=77.8
Q ss_pred ceeeeEEEe------e-eccc------cccc----ceeeEEEEecceeeecccCCCCCCCccEEEEecCce---------
Q 019858 6 VYEGWMVRY------G-RRKI------GRSF----IHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNC--------- 59 (335)
Q Consensus 6 ~~EGWly~~------g-~~~~------g~q~----~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~--------- 59 (335)
-+||.+.++ | ..+. +.++ +.||||||+...|. |-++|-+. .|+-.++.|-.-
T Consensus 183 ~~Eg~v~~r~~~~~~g~~~~~~~~~~~~~~~~~~~w~k~w~v~k~~~l~-~~~~p~~~-~~~~v~lfD~~~~~~~~~~~~ 260 (1068)
T PLN02866 183 LKEGYVMVKHLPKIPKSDDSRGCFPCCCFSCCNDNWQKVWAVLKPGFLA-LLEDPFDA-KPLDIIVFDVLPASNGNGEGQ 260 (1068)
T ss_pred cceeEEEEeccCCCCCCCccCCccccccCCeecCchheeEEEEeccEEE-EEecCCCC-ceeEEEEEecccccccCCCcc
Confidence 389999988 2 1111 2222 35799999999998 67788777 799999998322
Q ss_pred -EEeeCCcceecCceeEEEEEEecCCCcceEEEeecCHHHHHHHHHHHHHHHhhhhhhhccCCCccccccccc
Q 019858 60 -RVEDRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQHQESQVSNGNKYVSFEYKS 131 (335)
Q Consensus 60 -rVed~Gre~~hg~~~yvf~iyn~~~~~~~~~laa~s~eea~~W~~a~~~Ai~q~~~~~~~~~~~~~s~~~~~ 131 (335)
.+....-|. ...=|.|+|-| .+++++|=|.|..+|..|+.|++.|..+..+.- .+++-|-||-+-.
T Consensus 261 ~~~~~~~k~~--~~~~~~~~i~~---~~r~l~l~~~s~~~~~~w~~ai~~~~~~~~~~~-~~~hRF~SFAP~r 327 (1068)
T PLN02866 261 ISLAKEIKER--NPLRFGFKVTC---GNRSIRLRTKSSAKVKDWVAAINDAGLRPPEGW-CHPHRFGSFAPPR 327 (1068)
T ss_pred eeeccccccc--CCCcceEEEec---CceEEEEEECCHHHHHHHHHHHHHHHhccCccc-cccCcCCCcCCCc
Confidence 222211111 13446778755 578899999999999999999999953332211 1234566665554
No 74
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=96.46 E-value=0.0073 Score=60.74 Aligned_cols=98 Identities=14% Similarity=0.248 Sum_probs=62.9
Q ss_pred CCceeeeEEEeeecccccccceeeEEEEecceeeec-ccCCCCC---CCccEEEEecCceEEeeCCcceecCceeEEEEE
Q 019858 4 KVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYY-KKKPQDN---QVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSV 79 (335)
Q Consensus 4 ~~~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~Y-K~~P~~~---~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~i 79 (335)
.+..+||+++.+... . +.+|||.|.+..+.+. +..|... ..++...-+.+.|=|-. ... ...-++|.|
T Consensus 376 Dv~~~G~l~k~~~~~-~---wk~ry~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~pv~~--~~~--~~~~~~~~i 447 (478)
T PTZ00267 376 DVTHGGYLYKYSSDM-R---WKKRYFYIGNGQLRISLSENPENDGVAPKSVNLETVNDVFPVPE--VYS--QKHPNQLVL 447 (478)
T ss_pred CcccceEEeccCCCc-c---hhhheEEecCCceEEEeccccccCCCCCccccHHHhcccccccH--Hhc--CCCCceEEE
Confidence 455899999998644 2 5599999998877764 4455432 23333222444444411 001 123566777
Q ss_pred EecCCCcceEEEeecCHHHHHHHHHHHHHHHh
Q 019858 80 YNKKEKYHRITMAAFNIQEALIWKEKIELVID 111 (335)
Q Consensus 80 yn~~~~~~~~~laa~s~eea~~W~~a~~~Ai~ 111 (335)
-++. .+++=+-|.|.+|.+.||+||++|++
T Consensus 448 ~~~~--~~~~~~~~~~~~~~~~W~~~~~~~~~ 477 (478)
T PTZ00267 448 WFNN--GQKIIAYAKTAEDRDQWISKFQRACG 477 (478)
T ss_pred EecC--CcEEEEecCChHHHHHHHHHHHHHhC
Confidence 4433 44777778999999999999999953
No 75
>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain. Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.22 E-value=0.05 Score=47.33 Aligned_cols=101 Identities=18% Similarity=0.182 Sum_probs=62.8
Q ss_pred ceeeeEEEeeeccccc-----ccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCccee---------cC
Q 019858 6 VYEGWMVRYGRRKIGR-----SFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTH---------HG 71 (335)
Q Consensus 6 ~~EGWly~~g~~~~g~-----q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~---------hg 71 (335)
.+.|+|..+..+.... .-...||++|=..+|=|=|++..+. --+.-..--..+.|++.+-... ..
T Consensus 4 vK~GEL~~l~~~~~~~~~~~k~~~~~vylfLFnDlLl~tkkK~~~~-f~V~dy~~r~~l~V~~~e~~~~~~~~~~~~~~~ 82 (125)
T cd01221 4 VKRGELTQLEERGSSNILRKKLKARTIYLFLFNDLLLITKKKLGST-FVVFDYAPRSFLRVEKIEPDNQKIPLGSNLVGR 82 (125)
T ss_pred EEEeeEEEEeccCCcchhcccccCCcEEEEEecceEEEEEecCCCe-EEEEeeccccceEEeecccccccccccccccCC
Confidence 3568888876554321 1134789999999998777766444 1111011124455665322211 23
Q ss_pred ceeEEEEEE-ecCCCcceEEEeecCHHHHHHHHHHHH
Q 019858 72 HMVYVLSVY-NKKEKYHRITMAAFNIQEALIWKEKIE 107 (335)
Q Consensus 72 ~~~yvf~iy-n~~~~~~~~~laa~s~eea~~W~~a~~ 107 (335)
.-+|..++. |...+...+.|.|.|.+|-++||+||.
T Consensus 83 ~~~F~ltLl~N~~gk~~el~L~a~S~sdr~rWi~Al~ 119 (125)
T cd01221 83 PNLFLLTLLRNADDKQAELLLSADSQSDRERWLSALA 119 (125)
T ss_pred CceEEEEeeccCCCCEEEEEEECCCHHHHHHHHHhcC
Confidence 445555544 666788899999999999999999985
No 76
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=96.11 E-value=0.078 Score=44.64 Aligned_cols=89 Identities=20% Similarity=0.269 Sum_probs=58.0
Q ss_pred CceeeeEEEeeecccccccceeeEEEEecc-eeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEecC
Q 019858 5 VVYEGWMVRYGRRKIGRSFIHMRYFVLESR-LLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKK 83 (335)
Q Consensus 5 ~~~EGWly~~g~~~~g~q~~~~RyFVL~g~-~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~~ 83 (335)
+-++|.|.+.+ | -|.++|.|+|.+. .|.|+ +|... +==+.+.+.+.+.|+-..- . .|.|.-.
T Consensus 13 Il~~g~v~K~k----g-l~~kkR~liLTd~PrL~Yv--dp~~~-~~KGeI~~~~~l~v~~k~~-----~---~F~I~tp- 75 (104)
T PF14593_consen 13 ILKQGYVKKRK----G-LFAKKRQLILTDGPRLFYV--DPKKM-VLKGEIPWSKELSVEVKSF-----K---TFFIHTP- 75 (104)
T ss_dssp EEEEEEEEEEE----T-TEEEEEEEEEETTTEEEEE--ETTTT-EEEEEE--STT-EEEECSS-----S---EEEEEET-
T ss_pred EEEEEEEEEee----c-eEEEEEEEEEccCCEEEEE--ECCCC-eECcEEecCCceEEEEccC-----C---EEEEECC-
Confidence 34899999874 2 3489999999988 77755 35444 2126677778888886322 2 3445444
Q ss_pred CCcceEEEeecCHHHHHHHHHHHHHHHhhh
Q 019858 84 EKYHRITMAAFNIQEALIWKEKIELVIDQH 113 (335)
Q Consensus 84 ~~~~~~~laa~s~eea~~W~~a~~~Ai~q~ 113 (335)
.+++-|-. ...+|..|.+||++++.+.
T Consensus 76 --~RtY~l~d-~~~~A~~W~~~I~~~~~~~ 102 (104)
T PF14593_consen 76 --KRTYYLED-PEGNAQQWVEAIEEVKKQY 102 (104)
T ss_dssp --TEEEEEE--TTS-HHHHHHHHHHHHHHH
T ss_pred --CcEEEEEC-CCCCHHHHHHHHHHHHHHh
Confidence 67777765 5667999999999997664
No 77
>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.09 E-value=0.022 Score=48.98 Aligned_cols=100 Identities=19% Similarity=0.145 Sum_probs=66.8
Q ss_pred ceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCC--CCccEEEEec-CceEEeeCCcceecCceeEEEEEE-e
Q 019858 6 VYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDN--QVPIKTLLID-GNCRVEDRGLKTHHGHMVYVLSVY-N 81 (335)
Q Consensus 6 ~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~--~~Pirs~vid-~~~rVed~Gre~~hg~~~yvf~iy-n 81 (335)
+.|||||.+..-+-++- +|||||++.=|.|. .+.... -.-..-+.++ .|+-..-.|++.+..-.-|.|+|- +
T Consensus 1 e~~g~LylK~~gkKsWK---k~~f~LR~SGLYy~-~Kgksk~srdL~cl~~f~~~nvY~~~~~kKk~kAPTd~~F~~K~~ 76 (114)
T cd01259 1 EMEGPLYLKADGKKSWK---KYYFVLRSSGLYYF-PKEKTKNTRDLACLNLLHGHNVYTGLGWRKKYKSPTDYCFGFKAV 76 (114)
T ss_pred CccceEEEccCCCccce---EEEEEEeCCeeEEc-cCCCcCCHHHHHHHHhcccCcEEEEechhhccCCCCCceEEEecc
Confidence 36999999876666665 99999999999854 333333 1112223332 333344467888877888999984 3
Q ss_pred cC-C-CcceEE-EeecCHHHHHHHHHHHHHH
Q 019858 82 KK-E-KYHRIT-MAAFNIQEALIWKEKIELV 109 (335)
Q Consensus 82 ~~-~-~~~~~~-laa~s~eea~~W~~a~~~A 109 (335)
+. . .++-++ |-|++.+.-..|+-||+-|
T Consensus 77 ~~q~~~s~~ik~lCaeDe~t~~~W~ta~Ri~ 107 (114)
T cd01259 77 GDQSKGSQSIKYLCAEDLPTLDRWLTAIRIA 107 (114)
T ss_pred ccCcccchhheeeccCCHHHHHHHHHHHHHH
Confidence 32 2 245565 4567788888999999988
No 78
>KOG3640 consensus Actin binding protein Anillin [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=95.90 E-value=0.017 Score=63.90 Aligned_cols=111 Identities=21% Similarity=0.331 Sum_probs=78.9
Q ss_pred CCCCceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCC--CCccEEEEecCceE--EeeCCcceecCceeEEE
Q 019858 2 SSKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDN--QVPIKTLLIDGNCR--VEDRGLKTHHGHMVYVL 77 (335)
Q Consensus 2 ~~~~~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~--~~Pirs~vid~~~r--Ved~Gre~~hg~~~yvf 77 (335)
+..+.|-|+|+..- ..=|+-=+|+||-+|.|+...|+ +.|.|. ..||+.+=+..||. ||.--|++--...-|-+
T Consensus 987 ~idVEYrGFLtmfe-d~sgfGaWhRyWc~L~gg~I~fW-k~PdDEkrK~Pig~IDLt~CTsq~ie~a~rdicar~ntFhi 1064 (1116)
T KOG3640|consen 987 AIDVEYRGFLTMFE-DGSGFGAWHRYWCALHGGEIKFW-KYPDDEKRKVPIGQIDLTKCTSQSIEEARRDICARPNTFHI 1064 (1116)
T ss_pred ccceeeeeeeeeee-ccCCCchhhhhhHHhcCCeeeee-cCcchhcccCcceeeehhhhhccccccchhhhccCCceeEE
Confidence 34566999999988 45566669999999999999955 578876 89999999977775 44322222212223334
Q ss_pred EEEecCC---------CcceEEEeecCHHHHHHHHHHHHHHHhhhh
Q 019858 78 SVYNKKE---------KYHRITMAAFNIQEALIWKEKIELVIDQHQ 114 (335)
Q Consensus 78 ~iyn~~~---------~~~~~~laa~s~eea~~W~~a~~~Ai~q~~ 114 (335)
.+.-.++ +.-+.-|||.+.||-..|+.+|..++++..
T Consensus 1065 e~~rPl~~Dqep~~ie~r~Rv~LaADTkeel~~Wls~iN~tL~~LR 1110 (1116)
T KOG3640|consen 1065 EVWRPLEDDQEPLLIEKRLRVMLAADTKEELQSWLSAINDTLKQLR 1110 (1116)
T ss_pred EeecccccccCcchhhhcceeeeecccHHHHHHHHHHHHHHHHHHH
Confidence 4332221 112778999999999999999999987764
No 79
>cd08864 SRPBCC_DUF3074 DUF3074, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=95.83 E-value=0.024 Score=52.62 Aligned_cols=65 Identities=12% Similarity=0.010 Sum_probs=52.4
Q ss_pred ccccceee--eeeEEEEEeCcc----cEEEEEEeeCcccCcccCceeEEEEe-eEecC-CCcEEEEEeeeechhhh
Q 019858 255 YEWDCSFQ--YGSLVEEVDGHT----AILYHRLQLDWFPMFVWPRDLCYVRY-WRRND-DGSYGSMRTVVHNQDMY 322 (335)
Q Consensus 255 ~eWD~~~~--~~~vVE~iD~Ht----dIvy~~~~p~wlp~~~~~RDlv~~Ry-WrR~~-DGsYvIl~~Sv~H~~~~ 322 (335)
.+|-..+. ..++||..++-. .|+|.+++ +|+-+++|||+.+.. -...+ -.+++|+..++.|+.++
T Consensus 66 ~~~i~~v~~~~~~~l~~~~~~~~~~~~v~~~~~~---~P~Pl~~Rdfv~l~~~~~~~~~~~~~i~vs~p~~~~~~p 138 (208)
T cd08864 66 KEYVHEIGAYDLEPVEVDGEGDGVVTYLVQLTYK---FPFPLSPRVFNELVHIKSDLDPASEFMVVSLPITPPLVE 138 (208)
T ss_pred hhchhhhccceeEEeeecCCCccceEEEEEEEEE---CCCCCCCcEEEEEEEeeccCCCCCeEEEEEEEecCCcCC
Confidence 38888888 789999998776 89999999 555599999999988 33333 25678888899999987
No 80
>cd01258 PH_syntrophin Syntrophin pleckstrin homology (PH) domain. Syntrophin pleckstrin homology (PH) domain. Syntrophins are peripheral membrane proteins, which associate with the Duchenne muscular dystrophy protein dystrophin and other proteins to form the dystrophin glycoprotein complex (DGC). There are five syntrophin isoforms, alpha1, beta1, beta2, gamma1, and gamma2. They all contain two PH domains, with the N-teminal PH domain interupted by a PDZ domain. The N-terminal PH domain of alpha1syntrophin binds phosphatidylinositol 4,5-bisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=95.77 E-value=0.034 Score=47.25 Aligned_cols=99 Identities=8% Similarity=0.163 Sum_probs=68.3
Q ss_pred eeeEEEe-eecccccccceeeEEEEecceeeecccCCCCC---CCccEEEEec-CceEEeeCC--cceecCceeEEEEEE
Q 019858 8 EGWMVRY-GRRKIGRSFIHMRYFVLESRLLAYYKKKPQDN---QVPIKTLLID-GNCRVEDRG--LKTHHGHMVYVLSVY 80 (335)
Q Consensus 8 EGWly~~-g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~---~~Pirs~vid-~~~rVed~G--re~~hg~~~yvf~iy 80 (335)
=|||--. ..+..+.+-++.||++|+|+-|..|+..|.+. ..|..+.-+= --+||--.| +.. ..+.-+.|+|=
T Consensus 2 mGW~~E~~~~~~~~~~~wrP~F~aL~~~dl~ly~s~P~s~e~w~~p~~~y~L~~~atrvv~~~~~~~~-~~~~~~~F~ir 80 (108)
T cd01258 2 IGWVNEQLSGDDESSQRWRPRFLALKGSEFLFFETPPLSVEDWSRPLYVYKLYDVATRLVKNSSTRRL-NDQRDNCFLIR 80 (108)
T ss_pred ceecccccCCCCccccccceEEEEEcCCcEEEEeCCCCCHHHHhChhhhChhHHhhhheeccCCccCc-CCCCceEEEEE
Confidence 3787665 22355667788999999999999999999876 5777665441 133432221 221 23455778776
Q ss_pred ecCCCcceEEEeecCHHHHHHHHHHHHH
Q 019858 81 NKKEKYHRITMAAFNIQEALIWKEKIEL 108 (335)
Q Consensus 81 n~~~~~~~~~laa~s~eea~~W~~a~~~ 108 (335)
-..- =..-.|..++..|.+.|.+||+.
T Consensus 81 tg~~-vesh~fsVEt~~dL~~W~raiv~ 107 (108)
T cd01258 81 TGTQ-VENHYLRVETHRDLASWERALVR 107 (108)
T ss_pred cCCc-eeeEEEEecCHHHHHHHHHHHhc
Confidence 5422 26667899999999999999975
No 81
>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=95.48 E-value=0.16 Score=43.09 Aligned_cols=93 Identities=17% Similarity=0.281 Sum_probs=55.8
Q ss_pred eeeeEEEeeecccccccceeeEEEEec--ceeeecccCCCC-------CCCccEEEEecCceEEeeCCcceecCceeEEE
Q 019858 7 YEGWMVRYGRRKIGRSFIHMRYFVLES--RLLAYYKKKPQD-------NQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVL 77 (335)
Q Consensus 7 ~EGWly~~g~~~~g~q~~~~RyFVL~g--~~l~~YK~~P~~-------~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf 77 (335)
||||||..-.+.+|-.. .+.|+..++ +.+.|---.|.+ -..+.+-.|. .|.|... -.-.-=|.|
T Consensus 1 k~GYLy~~~k~~~~~~W-vk~y~~~~~~~~~f~m~~~~q~s~~~~~g~v~~~e~~~l~--sc~~r~~----~~~dRRFCF 73 (104)
T cd01249 1 KEGYLYMQEKSKFGGSW-TKYYCTYSKETRIFTMVPFNQKTKTDMKGAVAQDETLTLK--SCSRRKT----ESIDKRFCF 73 (104)
T ss_pred CCceEEEEcCCCCCCeE-EEEEEEEEcCCcEEEEEecccccccccCcccccceEEeee--ecccccc----CCccceeeE
Confidence 68999999977776443 355555443 233222112221 1344444443 2333321 111345889
Q ss_pred EEEecCCCcceEEEeecCHHHHHHHHHHHH
Q 019858 78 SVYNKKEKYHRITMAAFNIQEALIWKEKIE 107 (335)
Q Consensus 78 ~iyn~~~~~~~~~laa~s~eea~~W~~a~~ 107 (335)
.|-....+ ..++|=|.|..|-..||+|+.
T Consensus 74 ei~~~~~~-~~~~lQA~Se~~~~~Wi~A~d 102 (104)
T cd01249 74 DVEVEEKP-GVITMQALSEKDRRLWIEAMD 102 (104)
T ss_pred eeeecCCC-CeEEEEecCHHHHHHHHHhhc
Confidence 99876444 679999999999999999985
No 82
>KOG1090 consensus Predicted dual-specificity phosphatase [General function prediction only]
Probab=94.32 E-value=0.021 Score=63.79 Aligned_cols=94 Identities=26% Similarity=0.302 Sum_probs=69.3
Q ss_pred eeeeEEEeeecccccccceeeEEEEec--ceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEecCC
Q 019858 7 YEGWMVRYGRRKIGRSFIHMRYFVLES--RLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKE 84 (335)
Q Consensus 7 ~EGWly~~g~~~~g~q~~~~RyFVL~g--~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~~~ 84 (335)
+||.||++|.-=-++- .|||||.. ..|+||-..- | +.|=+-+=+-+---|...|-|++-.+.+|-+. -
T Consensus 1636 ~eG~LyKrGA~lK~Wk---~RwFVLd~~khqlrYYd~~e-d-t~pkG~IdLaevesv~~~~~k~vdekgffdlk-----t 1705 (1732)
T KOG1090|consen 1636 PEGYLYKRGAKLKLWK---PRWFVLDPDKHQLRYYDDFE-D-TKPKGCIDLAEVESVALIGPKTVDEKGFFDLK-----T 1705 (1732)
T ss_pred cccchhhcchhhcccc---cceeEecCCccceeeecccc-c-ccccchhhhhhhhhhcccCccccCccceeeee-----h
Confidence 8999999997766666 99999975 6888885433 2 35544333333344555677888888887664 3
Q ss_pred CcceEEEeecCHHHHHHHHHHHHHHH
Q 019858 85 KYHRITMAAFNIQEALIWKEKIELVI 110 (335)
Q Consensus 85 ~~~~~~laa~s~eea~~W~~a~~~Ai 110 (335)
..+.+.|-|.|+-+|-.|++.|+.+|
T Consensus 1706 t~rvynf~a~nin~AqqWve~iqscl 1731 (1732)
T KOG1090|consen 1706 TNRVYNFCAQNINLAQQWVECIQSCL 1731 (1732)
T ss_pred hhHHHHHHhccchHHHHHHHHHHHhh
Confidence 45677888999999999999999874
No 83
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=94.32 E-value=0.49 Score=39.28 Aligned_cols=91 Identities=19% Similarity=0.268 Sum_probs=58.8
Q ss_pred ceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEecCCC
Q 019858 6 VYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEK 85 (335)
Q Consensus 6 ~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~~~~ 85 (335)
.+||=+...+. | +.||+.|=.+.|=+=|++. ..-=.|+-|.=.+.+|.++ ..| ....|.|-.....
T Consensus 5 lleg~l~~~~~---~----~eR~vFLFe~~ll~~K~~~--~~y~~K~~i~~~~l~i~e~----~~~-d~~~F~v~~~~~p 70 (97)
T cd01222 5 LLEGRFREHGG---G----KPRLLFLFQTMLLIAKPRG--DKYQFKAYIPCKNLMLVEH----LPG-EPLCFRVIPFDDP 70 (97)
T ss_pred eeeceEEeecC---C----CceEEEEecccEEEEEecC--CeeEEEEEEEecceEEecC----CCC-CCcEEEEEecCCC
Confidence 35676654443 2 2466655444443334332 3344566665577777764 222 2578888665444
Q ss_pred cceEEEeecCHHHHHHHHHHHHHHH
Q 019858 86 YHRITMAAFNIQEALIWKEKIELVI 110 (335)
Q Consensus 86 ~~~~~laa~s~eea~~W~~a~~~Ai 110 (335)
.+++.+-|.|.|+-..||++|+.||
T Consensus 71 ~~~~~l~A~s~e~K~~W~~~i~~~i 95 (97)
T cd01222 71 KGALQLTARNREEKRIWTQQLKRAM 95 (97)
T ss_pred ceEEEEEecCHHHHHHHHHHHHHHh
Confidence 5799999999999999999999985
No 84
>cd01223 PH_Vav Vav pleckstrin homology (PH) domain. Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=93.70 E-value=0.42 Score=41.27 Aligned_cols=86 Identities=14% Similarity=0.174 Sum_probs=55.8
Q ss_pred ceeeEEEEecceeeecccCCCC---CCCccEEEEecCceEEeeCCccee---cCceeEEEEEEecCCCcceEEEeecCHH
Q 019858 24 IHMRYFVLESRLLAYYKKKPQD---NQVPIKTLLIDGNCRVEDRGLKTH---HGHMVYVLSVYNKKEKYHRITMAAFNIQ 97 (335)
Q Consensus 24 ~~~RyFVL~g~~l~~YK~~P~~---~~~Pirs~vid~~~rVed~Gre~~---hg~~~yvf~iyn~~~~~~~~~laa~s~e 97 (335)
.+.||..|=.+.+=.=|.+-.. .+--.|..+.=..++|+++...-. .++--|.|.|--+ ++...++|.|.|.|
T Consensus 20 ~k~RyiFLFDk~lI~CK~~~~~~~~~~Y~~Ke~~~l~~~~I~~~~~~d~~~~~~~~~~~f~L~~~-~~~~~~~f~~Ktee 98 (116)
T cd01223 20 TKLRYIFLFDKAVIVCKALGDNTGDMQYTYKDIHDLADYKIENNPSRDTEGRDTRWKYGFYLAHK-QGKTGFTFYFKTEH 98 (116)
T ss_pred CceeEEEEecceEEEEEecCCCCCCccEEhHHhhhhheeeeEecCccCcccCCcceEEEEEEEec-CCCccEEEEeCCHH
Confidence 4578877766666656654321 112234444335666776521111 2256678888775 55567999999999
Q ss_pred HHHHHHHHHHHHH
Q 019858 98 EALIWKEKIELVI 110 (335)
Q Consensus 98 ea~~W~~a~~~Ai 110 (335)
|-.+||+||+.|+
T Consensus 99 ~K~kWm~al~~a~ 111 (116)
T cd01223 99 LRKKWLKALEMAM 111 (116)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999995
No 85
>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=92.26 E-value=0.53 Score=40.42 Aligned_cols=79 Identities=22% Similarity=0.362 Sum_probs=59.6
Q ss_pred ccccceeeEEEEecceeeecccCCCCC------CCccEEEEecCceEEeeCCcceecCceeEEEEEEecCCCcceEEEee
Q 019858 20 GRSFIHMRYFVLESRLLAYYKKKPQDN------QVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEKYHRITMAA 93 (335)
Q Consensus 20 g~q~~~~RyFVL~g~~l~~YK~~P~~~------~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~~~~~~~~~laa 93 (335)
+-|=.+.|||||=.+.|-+....|... .-|+.-+.| ++.||. + +..++|.|-- +--+.+.+-|
T Consensus 24 ~~qe~~eRyLvLFp~~LlilS~s~r~sGf~yqGkLPL~~i~v---~~lEd~--e----~~~~aFeI~G--~li~~i~v~C 92 (111)
T cd01225 24 AGEEKRERYLVLFPNVLLMLSASPRMSGFIYQGKLPLTGIIV---TRLEDT--E----ALKNAFEISG--PLIERIVVVC 92 (111)
T ss_pred CccccceeEEEEcCceEEEEEcCCCccceEEeeeecccccEE---echHhc--c----CccceEEEec--cCcCcEEEEe
Confidence 344467999999999999999988553 578877777 334432 1 2367888874 4456788899
Q ss_pred cCHHHHHHHHHHHHHH
Q 019858 94 FNIQEALIWKEKIELV 109 (335)
Q Consensus 94 ~s~eea~~W~~a~~~A 109 (335)
.|.+|...|++-|+.-
T Consensus 93 ~~~~e~~~Wl~hL~~~ 108 (111)
T cd01225 93 NNPQDAQEWVELLNAN 108 (111)
T ss_pred CCHHHHHHHHHHHHhh
Confidence 9999999999999875
No 86
>KOG3751 consensus Growth factor receptor-bound proteins (GRB7, GRB10, GRB14) [Signal transduction mechanisms]
Probab=91.99 E-value=0.45 Score=50.36 Aligned_cols=102 Identities=24% Similarity=0.241 Sum_probs=76.3
Q ss_pred CCCceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCCCccE----EEEecCceEEeeCCcceecCceeEEEE
Q 019858 3 SKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIK----TLLIDGNCRVEDRGLKTHHGHMVYVLS 78 (335)
Q Consensus 3 ~~~~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pir----s~vid~~~rVed~Gre~~hg~~~yvf~ 78 (335)
+.+.|+|+||.++--|-++- |=||||+--=|. |..|-..+ +|-- .-+=+.|+-|---|||.+.--.-|.|+
T Consensus 315 ~~pei~GfL~~K~dgkKsWK---k~yf~LR~SGLY-ys~K~tsk-~~r~Lq~l~~~~~snVYt~i~~rKkyksPTd~~f~ 389 (622)
T KOG3751|consen 315 SPPEIQGFLYLKEDGKKSWK---KHYFVLRRSGLY-YSTKGTSK-EPRHLQCLADLHSSNVYTGIGGRKKYKSPTDYGFC 389 (622)
T ss_pred CCccccceeeecccccccce---eEEEEEecCcce-EccCCCCC-CchhhHHHHhcccCceEEeecchhccCCCCCceEE
Confidence 46779999999999888887 999999999997 54444333 3322 123356777777799999888999999
Q ss_pred EEecC--CCcceEEE-eecCHHHHHHHHHHHHHH
Q 019858 79 VYNKK--EKYHRITM-AAFNIQEALIWKEKIELV 109 (335)
Q Consensus 79 iyn~~--~~~~~~~l-aa~s~eea~~W~~a~~~A 109 (335)
|--.+ .+.+-||| -|++.+.-..|+-||+-+
T Consensus 390 ~K~~~~~~~~r~lk~lCAEDe~t~~~WltAiRl~ 423 (622)
T KOG3751|consen 390 IKPNKLRNKRRFLKMLCAEDEQTRTCWLTAIRLL 423 (622)
T ss_pred eeeccccCcccceeeeecccchhHHHHHHHHHHH
Confidence 98433 33467776 457777889999999866
No 87
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=91.04 E-value=0.28 Score=53.26 Aligned_cols=94 Identities=33% Similarity=0.498 Sum_probs=72.4
Q ss_pred eeeeEEEe--eecccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceE-EeeCCcceecCceeEEEEEEecC
Q 019858 7 YEGWMVRY--GRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCR-VEDRGLKTHHGHMVYVLSVYNKK 83 (335)
Q Consensus 7 ~EGWly~~--g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~r-Ved~Gre~~hg~~~yvf~iyn~~ 83 (335)
.||-|+++ |+-++|..-+.||||=|.+.-|. |-+.|.. .|+.++-+ .|++ ||....+++. +-.||.|.-.-
T Consensus 567 k~glm~kr~~gr~~~~~~~FKKryf~LT~~~Ls-~~Ksp~~--q~~~~Ipl-~nI~avEklee~sF~--~knv~qVV~~d 640 (800)
T KOG2059|consen 567 KEGLMIKRAQGRGRFGKKNFKKRYFRLTTEELS-YAKSPGK--QPIYTIPL-SNIRAVEKLEEKSFK--MKNVFQVVHTD 640 (800)
T ss_pred cccceEeccccccchhhhhhhheEEEeccceeE-EecCCcc--CcccceeH-HHHHHHHHhhhhccC--CCceEEEEecC
Confidence 78888875 55677877889999999999999 6666644 57888888 6665 5544566664 44566665442
Q ss_pred CCcceEEEeecCHHHHHHHHHHHHHH
Q 019858 84 EKYHRITMAAFNIQEALIWKEKIELV 109 (335)
Q Consensus 84 ~~~~~~~laa~s~eea~~W~~a~~~A 109 (335)
+++-+-|.|--||..|..||..+
T Consensus 641 ---rtly~Q~~n~vEandWldaL~kv 663 (800)
T KOG2059|consen 641 ---RTLYVQAKNCVEANDWLDALRKV 663 (800)
T ss_pred ---cceeEecCCchHHHHHHHHHHHH
Confidence 69999999999999999999887
No 88
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=90.84 E-value=0.62 Score=47.62 Aligned_cols=40 Identities=25% Similarity=0.263 Sum_probs=34.8
Q ss_pred cCceeEEEEEEecCCCcceEEEeecCHHHHHHHHHHHHHHHh
Q 019858 70 HGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVID 111 (335)
Q Consensus 70 hg~~~yvf~iyn~~~~~~~~~laa~s~eea~~W~~a~~~Ai~ 111 (335)
.-+.-|||.+.++ ..+.+-|-|.+.+|...||++|+++++
T Consensus 451 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (496)
T PTZ00283 451 GSNAAHVFAVAFK--TGRRLLFQARSDPERDAWMQKIQSVLG 490 (496)
T ss_pred CCCCCcEEEEEec--CCcEEEEecCCchhHHHHHHHHHHhcC
Confidence 3357899999986 578899999999999999999999964
No 89
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=89.93 E-value=0.81 Score=48.84 Aligned_cols=96 Identities=22% Similarity=0.254 Sum_probs=63.4
Q ss_pred eeeeEEEeeecccccccceeeEEEEecceeeecccC---CCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEecC
Q 019858 7 YEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKK---PQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKK 83 (335)
Q Consensus 7 ~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~---P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~~ 83 (335)
+||=++++-.++-..| .||++|=+..+-|=|.+ |..+-.+--..-+++....++ .++.-.-.|-+.
T Consensus 274 KEG~l~Kis~k~~~~q---eRylfLFNd~~lyc~~r~~~~~~k~~~r~~~s~~~~~v~~~-----~~~~~~~tF~~~--- 342 (623)
T KOG4424|consen 274 KEGQLQKISAKNGTTQ---ERYLFLFNDILLYCKPRKRLPGSKYEVRARCSISHMQVQED-----DNEELPHTFILT--- 342 (623)
T ss_pred hccceeeeeccCCCcc---eeEEEEehhHHHhhhhhhhcccceeccceeeccCcchhccc-----ccccCCceEEEe---
Confidence 8999999999988888 99999998877643322 222211211222212222222 222222233332
Q ss_pred CCcceEEEeecCHHHHHHHHHHHHHHHhhh
Q 019858 84 EKYHRITMAAFNIQEALIWKEKIELVIDQH 113 (335)
Q Consensus 84 ~~~~~~~laa~s~eea~~W~~a~~~Ai~q~ 113 (335)
-+.+.++|.|.+.+|...|+.+|+.|||.+
T Consensus 343 G~~r~vel~a~t~~ek~eWv~~I~~~Id~~ 372 (623)
T KOG4424|consen 343 GKKRGVELQARTEQEKKEWVQAIQDAIDKH 372 (623)
T ss_pred cccceEEeecCchhhHHHHHHHHHHHHHHH
Confidence 278999999999999999999999999876
No 90
>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain. Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=89.29 E-value=4.2 Score=34.70 Aligned_cols=91 Identities=19% Similarity=0.308 Sum_probs=59.2
Q ss_pred cccccccceeeEEEEecceeeecccCCCCC-CCccEEEEecCceEEeeCCcceecCceeEEEEEEecCCC--cceEEEee
Q 019858 17 RKIGRSFIHMRYFVLESRLLAYYKKKPQDN-QVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEK--YHRITMAA 93 (335)
Q Consensus 17 ~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~-~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~~~~--~~~~~laa 93 (335)
++-|.+ +|-|+.+.-+|++=..++... ..| ..+.-..+.+++-|.+.+-++...-|.|..+... .+.+.+=|
T Consensus 21 ~~K~~e---R~vFLFe~~lvfsk~~~~~~~~~~~--~Y~yK~~ikls~l~l~e~v~gd~~kF~i~~~~~~~~~~~~ilqA 95 (114)
T cd01232 21 IQKGRE---RRVFLFEQSIIFAKEVKKKKQFGNP--KYIYKSKLQVSKMGLTEHVEGDPCRFALWSGDPPISDNRIILKA 95 (114)
T ss_pred cCCCce---eEEEEeeceEEEEEEeccCCCCCce--eEEEecceeeeeeEeEEccCCCCceEEEEeCCCCCCceEEEEEC
Confidence 344555 777887877777432222211 122 1333344455555555555556778888877654 68999999
Q ss_pred cCHHHHHHHHHHHHHHHhh
Q 019858 94 FNIQEALIWKEKIELVIDQ 112 (335)
Q Consensus 94 ~s~eea~~W~~a~~~Ai~q 112 (335)
.|.|+-..|+..|..+++|
T Consensus 96 ~s~e~K~~W~~~I~~il~~ 114 (114)
T cd01232 96 NSQETKQEWVKKIREILQE 114 (114)
T ss_pred CCHHHHHHHHHHHHHHhhC
Confidence 9999999999999998653
No 91
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=88.56 E-value=1.6 Score=48.76 Aligned_cols=97 Identities=13% Similarity=0.198 Sum_probs=70.3
Q ss_pred eeEEEeeecc-------cccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCccee-cCceeEEEEEE
Q 019858 9 GWMVRYGRRK-------IGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTH-HGHMVYVLSVY 80 (335)
Q Consensus 9 GWly~~g~~~-------~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~-hg~~~yvf~iy 80 (335)
|+||.--++. -++.=+.++|-||.|-.|.||.... + ..|.+.+-|++=.-|.-.--+++ +-+++|+|.||
T Consensus 496 ~fLyc~~sa~~kl~~drr~~Ee~nr~wcVlg~g~ls~fen~~-S-~tP~~lI~~~Eivclav~~pd~~pn~~~~f~fE~~ 573 (1186)
T KOG1117|consen 496 GFLYCAPSAASKLSSDRRLREETNRKWCVLGGGFLSYFENEK-S-TTPNGLININEIVCLAVHPPDTYPNTGFIFIFEIY 573 (1186)
T ss_pred ceeeechhhccCCCChhhhcccCCCceEEcCcchhhhhhhcC-C-CCCCceeeccceEEEeecCCCCCCCcCceeEEEEe
Confidence 8888755443 3455567899999999999775333 2 36777777755433333223333 44799999999
Q ss_pred ecCCCcceEEEeecCHHHHHHHHHHHHHH
Q 019858 81 NKKEKYHRITMAAFNIQEALIWKEKIELV 109 (335)
Q Consensus 81 n~~~~~~~~~laa~s~eea~~W~~a~~~A 109 (335)
= ..++-+.||+++++++.+|-+|+-.+
T Consensus 574 l--~~er~~~fgle~ad~l~~wt~aiaKh 600 (1186)
T KOG1117|consen 574 L--PGERVFLFGLETADALRKWTEAIAKH 600 (1186)
T ss_pred e--cccceEEeecccHHHHHHHHHHHHHh
Confidence 5 67899999999999999999998644
No 92
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=88.07 E-value=1.3 Score=35.71 Aligned_cols=52 Identities=10% Similarity=0.192 Sum_probs=38.3
Q ss_pred ceEEeeeeecCHHHHHHHhhccCCCcccccceeeeeeEEEEEe-CcccEEEEEE
Q 019858 229 AMKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVD-GHTAILYHRL 281 (335)
Q Consensus 229 ~~kavgvV~aspe~IFe~lm~~d~~R~eWD~~~~~~~vVE~iD-~HtdIvy~~~ 281 (335)
.+...-.|+|||++||++|.|++. -.+|.......++++.-+ +...+.+..+
T Consensus 3 ~v~~s~~i~ap~e~V~~~l~D~~~-~~~w~p~~~~~~~~~~~~~~~~~~~~~~~ 55 (140)
T cd07819 3 KVSREFEIEAPPAAVMDVLADVEA-YPEWSPKVKSVEVLLRDNDGRPEMVRIGV 55 (140)
T ss_pred eEEEEEEEeCCHHHHHHHHhChhh-hhhhCcceEEEEEeccCCCCCEEEEEEEE
Confidence 345667899999999999999973 669999998888876654 3333444333
No 93
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=86.63 E-value=0.82 Score=50.98 Aligned_cols=79 Identities=19% Similarity=0.269 Sum_probs=62.6
Q ss_pred ccceeeEEEEecceeeecccCCCCC---CCccEEEEecCceEEeeCCcceecCceeEEEEEEecCCCcceEEEeecCHHH
Q 019858 22 SFIHMRYFVLESRLLAYYKKKPQDN---QVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQE 98 (335)
Q Consensus 22 q~~~~RyFVL~g~~l~~YK~~P~~~---~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~~~~~~~~~laa~s~ee 98 (335)
.+++.|||||.|..|..||+....+ +=||.+..+=-|++=. ++. -..|.|++|. +|. +.-+-|.++-|
T Consensus 1049 ~~fqdryfilng~~l~lyke~KssKhek~wpl~s~k~Y~Gvkkk---lKp---Pt~wg~T~i~--ekh-h~~l~cd~s~~ 1119 (1186)
T KOG1117|consen 1049 NKFQDRYFILNGGCLFLYKEVKSSKHEKEWPLSSMKVYLGVKKK---LKP---PTSWGFTAIS--EKH-HWYLCCDSSSE 1119 (1186)
T ss_pred CccceEEEEecCcEEEEeehhhccccccccccccceEEeccccc---cCC---CCccceeeee--ecc-eEEEecCCccc
Confidence 4677999999999999999988766 8999998873332211 333 5789999993 333 78889999999
Q ss_pred HHHHHHHHHHH
Q 019858 99 ALIWKEKIELV 109 (335)
Q Consensus 99 a~~W~~a~~~A 109 (335)
.-.|+-.+=-|
T Consensus 1120 ~~ewfts~fka 1130 (1186)
T KOG1117|consen 1120 QTEWFTSIFKA 1130 (1186)
T ss_pred cchhhhhhhhh
Confidence 99999998777
No 94
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=86.11 E-value=1.6 Score=37.83 Aligned_cols=42 Identities=17% Similarity=0.281 Sum_probs=34.0
Q ss_pred eeeeecCHHHHHHHhhccCCCcccccceeeeeeEEEEEeCcccE
Q 019858 233 VGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAI 276 (335)
Q Consensus 233 vgvV~aspe~IFe~lm~~d~~R~eWD~~~~~~~vVE~iD~HtdI 276 (335)
.-+|+|+|++||++|-|++. -.+|.......+++|. +++...
T Consensus 6 si~i~a~~~~v~~lvaDv~~-~P~~~~~~~~~~~l~~-~~~~~~ 47 (146)
T cd08860 6 SIVIDAPLDLVWDMTNDIAT-WPDLFSEYAEAEVLEE-DGDTVR 47 (146)
T ss_pred EEEEcCCHHHHHHHHHhhhh-hhhhccceEEEEEEEe-cCCeEE
Confidence 45899999999999999972 3499999999999985 444443
No 95
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=85.95 E-value=1.3 Score=36.57 Aligned_cols=42 Identities=19% Similarity=0.156 Sum_probs=35.7
Q ss_pred EEeeeeecCHHHHHHHhhccCCCcccccceeeeeeEEEEEeCc
Q 019858 231 KAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGH 273 (335)
Q Consensus 231 kavgvV~aspe~IFe~lm~~d~~R~eWD~~~~~~~vVE~iD~H 273 (335)
++.-.|+|||+.||++|-|++. -.+|...+...++++.-++.
T Consensus 2 ~~~~~i~a~~~~Vw~~l~D~~~-~~~w~p~v~~~~~l~~~~~~ 43 (144)
T cd08866 2 VARVRVPAPPETVWAVLTDYDN-LAEFIPNLAESRLLERNGNR 43 (144)
T ss_pred eEEEEECCCHHHHHHHHhChhh-HHhhCcCceEEEEEEcCCCE
Confidence 5677899999999999999983 56999999999999875443
No 96
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=85.83 E-value=2.9 Score=34.52 Aligned_cols=86 Identities=15% Similarity=0.100 Sum_probs=56.6
Q ss_pred EeeeeecCHHHHHHHhhccCCCcccccceeeeeeEEEEEeCcccEEEEEEeeCcccCcccCceeEEEEeeEecCCCcEEE
Q 019858 232 AVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYGS 311 (335)
Q Consensus 232 avgvV~aspe~IFe~lm~~d~~R~eWD~~~~~~~vVE~iD~HtdIvy~~~~p~wlp~~~~~RDlv~~RyWrR~~DGsYvI 311 (335)
..-.|+|||++||++|-|++. -.+|...+...+++|.-+.+ ..++.... + | ...++++....+. ++.+ |
T Consensus 3 ~s~~i~ap~~~v~~~i~D~~~-~~~~~p~~~~~~vl~~~~~~-~~~~~~~~--~-~--~~~~~~~~~~~~~--~~~~--i 71 (138)
T cd07813 3 KSRLVPYSAEQMFDLVADVER-YPEFLPWCTASRVLERDEDE-LEAELTVG--F-G--GIRESFTSRVTLV--PPES--I 71 (138)
T ss_pred EEEEcCCCHHHHHHHHHHHHh-hhhhcCCccccEEEEcCCCE-EEEEEEEe--e-c--cccEEEEEEEEec--CCCE--E
Confidence 356789999999999999973 66999999999999987744 34454443 2 2 2478887655443 3443 3
Q ss_pred EEeeeech-hhhhhcccc
Q 019858 312 MRTVVHNQ-DMYELTWRV 328 (335)
Q Consensus 312 l~~Sv~H~-~~~~~t~~~ 328 (335)
-+.++..+ +..+.+|++
T Consensus 72 ~~~~~~g~~~~~~g~w~~ 89 (138)
T cd07813 72 EAELVDGPFKHLEGEWRF 89 (138)
T ss_pred EEEecCCChhhceeEEEE
Confidence 45555443 123445544
No 97
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=79.95 E-value=8.3 Score=30.80 Aligned_cols=38 Identities=16% Similarity=0.189 Sum_probs=29.7
Q ss_pred eEEeeeeecCHHHHHHHhhccCCCcccccceeeeeeEEE
Q 019858 230 MKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVE 268 (335)
Q Consensus 230 ~kavgvV~aspe~IFe~lm~~d~~R~eWD~~~~~~~vVE 268 (335)
+...-.|+|+|++||++|.+++. ..+|...+...++++
T Consensus 4 ~~~~~~v~a~~e~V~~~l~d~~~-~~~w~~~~~~~~~~~ 41 (139)
T PF10604_consen 4 VEVSIEVPAPPEAVWDLLSDPEN-WPRWWPGVKSVELLS 41 (139)
T ss_dssp EEEEEEESS-HHHHHHHHTTTTG-GGGTSTTEEEEEEEE
T ss_pred EEEEEEECCCHHHHHHHHhChhh-hhhhhhceEEEEEcc
Confidence 34567899999999999999974 668988777776666
No 98
>PF11274 DUF3074: Protein of unknown function (DUF3074)
Probab=76.87 E-value=11 Score=34.54 Aligned_cols=69 Identities=14% Similarity=0.048 Sum_probs=52.0
Q ss_pred cccceeeeeeEEEEE----------eCcccEEEEEEeeCcccCcccCceeEEEEeeEecC---------CCcEEEEEeee
Q 019858 256 EWDCSFQYGSLVEEV----------DGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRND---------DGSYGSMRTVV 316 (335)
Q Consensus 256 eWD~~~~~~~vVE~i----------D~HtdIvy~~~~p~wlp~~~~~RDlv~~RyWrR~~---------DGsYvIl~~Sv 316 (335)
+..-.+...++||++ ++...|....++ ||+.+++|||+-+-.=.-.. --+++|+..-+
T Consensus 33 ~yi~~i~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~k---fp~pl~~R~F~~Lvit~~~~~~~~~~~~~~~~f~vVs~P~ 109 (184)
T PF11274_consen 33 EYIPGIGSVERLERWDVDDGGGGWGDGTMEVWQLSYK---FPGPLSPRVFVVLVITADLPSKTEDDSTGPREFMVVSIPV 109 (184)
T ss_pred HhccccceEEEEEEeccccCCcccccceEEEEEEEeE---CCCCCCCcEEEEEEEEeccCccccCCCCCCCeEEEEEEEc
Confidence 456677788888888 788888888888 78889999998776654444 35677788899
Q ss_pred echhhhhhccc
Q 019858 317 HNQDMYELTWR 327 (335)
Q Consensus 317 ~H~~~~~~t~~ 327 (335)
.|+++.....-
T Consensus 110 ~~~~~~~~~~~ 120 (184)
T PF11274_consen 110 DHPDSPPRKGY 120 (184)
T ss_pred CCcccCCCCCC
Confidence 99766655443
No 99
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=75.96 E-value=9.9 Score=30.73 Aligned_cols=40 Identities=13% Similarity=0.124 Sum_probs=33.4
Q ss_pred eecCHHHHHHHhhccCCCcccccceeeeeeEEEEEeCcccE
Q 019858 236 VEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAI 276 (335)
Q Consensus 236 V~aspe~IFe~lm~~d~~R~eWD~~~~~~~vVE~iD~HtdI 276 (335)
|+|||++||+.|.|.+. -.+|---+...++++.-++++.+
T Consensus 1 V~ap~~~V~~~i~D~e~-~~~~~p~~~~v~vl~~~~~~~~~ 40 (130)
T PF03364_consen 1 VNAPPEEVWSVITDYEN-YPRFFPPVKEVRVLERDGDGMRA 40 (130)
T ss_dssp ESS-HHHHHHHHTTGGG-HHHHCTTEEEEEEEEEECCEEEE
T ss_pred CCCCHHHHHHHHHHHHH-HHHhCCCCceEEEEEeCCCeEEE
Confidence 78999999999999973 44998889999999999886555
No 100
>cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain. Phospholipase C (PLC) pleckstrin homology (PH) domain. There are several isozymes of PLC (beta, gamma, delta, epsilon. zeta). While, PLC beta, gamma and delta all have N-terminal PH domains, lipid binding specificity is not conserved between them. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=75.49 E-value=9.8 Score=31.49 Aligned_cols=36 Identities=11% Similarity=0.201 Sum_probs=27.8
Q ss_pred eeEEEEEEecCC-CcceEEEeecCHHHHHHHHHHHHH
Q 019858 73 MVYVLSVYNKKE-KYHRITMAAFNIQEALIWKEKIEL 108 (335)
Q Consensus 73 ~~yvf~iyn~~~-~~~~~~laa~s~eea~~W~~a~~~ 108 (335)
.-..|+|.-..+ +.+.+-|-|.|.++|..|++.|..
T Consensus 78 e~~~fTIiy~~~~~~k~L~lVA~s~~~a~~W~~gL~~ 114 (115)
T cd01248 78 EERCFTIVYGTDLNLKSLDLVAPSEEEAKTWVSGLRK 114 (115)
T ss_pred cccEEEEEECCCCCeeEEEEEECCHHHHHHHHHHHhh
Confidence 345677765432 466799999999999999999863
No 101
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=75.40 E-value=7.8 Score=31.36 Aligned_cols=37 Identities=8% Similarity=-0.084 Sum_probs=28.4
Q ss_pred eEEeeeeecCHHHHHHHhhccCCCcccccceeeeeeEE
Q 019858 230 MKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLV 267 (335)
Q Consensus 230 ~kavgvV~aspe~IFe~lm~~d~~R~eWD~~~~~~~vV 267 (335)
+...-.|++||++||+.|.|++. ..+|........++
T Consensus 3 ~~~~~~i~a~~e~v~~~l~D~~~-~~~w~p~~~~~~~~ 39 (144)
T cd05018 3 ISGEFRIPAPPEEVWAALNDPEV-LARCIPGCESLEKI 39 (144)
T ss_pred eeeEEEecCCHHHHHHHhcCHHH-HHhhccchhhcccc
Confidence 35567899999999999999973 55898776654443
No 102
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=74.51 E-value=2.7 Score=46.55 Aligned_cols=98 Identities=11% Similarity=0.194 Sum_probs=67.3
Q ss_pred eeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEecCCCc
Q 019858 7 YEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEKY 86 (335)
Q Consensus 7 ~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~~~~~ 86 (335)
++|.+|++-.+ ....+-+|||-+.++.+-|+++--... . +.+..=-+|-|...-.++ ..-|.|.|.+ ++
T Consensus 276 ~~~~l~~k~~~--~~~tw~r~~f~~q~~~l~~~~r~~~~~-~--~~~~dL~~csvk~~~~~~---drr~CF~iiS---~t 344 (785)
T KOG0521|consen 276 MEGYLRKKASN--ASKTWKRRWFSIQDGQLGYQHRGADAE-N--VLIEDLRTCSVKPDAEQR---DRRFCFEIIS---PT 344 (785)
T ss_pred hhhhhhhhccc--chhhHHhhhhhhhcccccccccccccc-c--cccccchhccccCCcccc---cceeeEEEec---CC
Confidence 55555554433 466677899999999998665443222 1 111111355555543333 3568999988 88
Q ss_pred ceEEEeecCHHHHHHHHHHHHHHHhhhhh
Q 019858 87 HRITMAAFNIQEALIWKEKIELVIDQHQE 115 (335)
Q Consensus 87 ~~~~laa~s~eea~~W~~a~~~Ai~q~~~ 115 (335)
+.+.+=|+|..+-..||+++++.|.+.-.
T Consensus 345 ks~~lQAes~~d~~~Wi~~i~nsi~s~l~ 373 (785)
T KOG0521|consen 345 KSYLLQAESEKDCQDWISALQNSILSALN 373 (785)
T ss_pred cceEEecCchhHHHHHHHHHHHHHHHHHh
Confidence 88999999999999999999999887633
No 103
>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=74.45 E-value=45 Score=29.36 Aligned_cols=90 Identities=11% Similarity=0.187 Sum_probs=61.7
Q ss_pred eeEEEEecceeeecccC-CCCC-CCccEEEEecCceEEeeCCcceecCceeEEEEEEecCCCcceEEEeecCHHHHHHHH
Q 019858 26 MRYFVLESRLLAYYKKK-PQDN-QVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWK 103 (335)
Q Consensus 26 ~RyFVL~g~~l~~YK~~-P~~~-~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~~~~~~~~~laa~s~eea~~W~ 103 (335)
++-|+.+.-.|++=+++ +.+. ..| +.+.=..+.+.+-|..-.-++...-|.|..+. ....+.+=|.|.|.-.+|+
T Consensus 32 RhVFLFE~~viF~K~~~~~~~~~~~p--~Y~yK~~ikls~lglte~v~gd~~kFeiw~~~-~~~~yilqA~t~e~K~~Wv 108 (133)
T cd01227 32 RHIFLHEKAVLFCKKREENGEGEKAP--SYSFKQSLKMTAVGITENVKGDTKKFEIWYNA-REEVYILQAPTPEIKAAWV 108 (133)
T ss_pred eEEEEecceEEEEEEeccCCCCCcce--eEEEeeeEEeecccccccCCCCccEEEEEeCC-CCcEEEEEcCCHHHHHHHH
Confidence 55566666677643221 1110 123 24444556666666666555667788888765 5679999999999999999
Q ss_pred HHHHHHHhhhhhhhc
Q 019858 104 EKIELVIDQHQESQV 118 (335)
Q Consensus 104 ~a~~~Ai~q~~~~~~ 118 (335)
+.|...+.+|.+..-
T Consensus 109 ~~I~~iL~~Q~~~lk 123 (133)
T cd01227 109 NEIRKVLTSQLQACK 123 (133)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999977643
No 104
>PRK10724 hypothetical protein; Provisional
Probab=72.33 E-value=4.4 Score=35.90 Aligned_cols=46 Identities=15% Similarity=0.234 Sum_probs=39.0
Q ss_pred ccceEEeeeeecCHHHHHHHhhccCCCcccccceeeeeeEEEEEeCc
Q 019858 227 SRAMKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGH 273 (335)
Q Consensus 227 ~~~~kavgvV~aspe~IFe~lm~~d~~R~eWD~~~~~~~vVE~iD~H 273 (335)
-|.+...-+|++||+++|++|.|++. -.+|=.-...++|+|+-++.
T Consensus 14 M~~i~~~~~v~~s~~~v~~lv~Dve~-yp~flp~~~~s~vl~~~~~~ 59 (158)
T PRK10724 14 MPQISRTALVPYSAEQMYQLVNDVQS-YPQFLPGCTGSRVLESTPGQ 59 (158)
T ss_pred CCeEEEEEEecCCHHHHHHHHHHHHH-HHHhCcccCeEEEEEecCCE
Confidence 35677889999999999999999973 34998888899999987764
No 105
>KOG1737 consensus Oxysterol-binding protein [Lipid transport and metabolism]
Probab=71.81 E-value=2.6 Score=46.65 Aligned_cols=38 Identities=32% Similarity=0.574 Sum_probs=32.7
Q ss_pred ceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCC
Q 019858 6 VYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDN 46 (335)
Q Consensus 6 ~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~ 46 (335)
..+||||+-..-.-|++ +|||||.+-+|.||+..-.++
T Consensus 78 ~~~g~l~k~~n~~~~~~---~r~f~l~~g~ls~~~~~~~~~ 115 (799)
T KOG1737|consen 78 SLEGILLKWRNYSKGPS---SRWFVLSGGLLSYYFDNSFSK 115 (799)
T ss_pred cccceeeccccccCCcc---cceEEecCcceeeeccCCccc
Confidence 47899999988888888 999999999999998776555
No 106
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=71.79 E-value=8.9 Score=30.57 Aligned_cols=40 Identities=13% Similarity=0.302 Sum_probs=32.2
Q ss_pred ceEEeeeeecCHHHHHHHhhccCCCcccccceeeeeeEEEE
Q 019858 229 AMKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEE 269 (335)
Q Consensus 229 ~~kavgvV~aspe~IFe~lm~~d~~R~eWD~~~~~~~vVE~ 269 (335)
.++..-.|+|||+.||+.|.+++. ..+|...+...++++.
T Consensus 2 ~i~~~~~i~a~~~~V~~~l~d~~~-~~~w~~~~~~~~~~~~ 41 (140)
T cd07821 2 KVTVSVTIDAPADKVWALLSDFGG-LHKWHPAVASCELEGG 41 (140)
T ss_pred cEEEEEEECCCHHHHHHHHhCcCc-hhhhccCcceEEeecC
Confidence 356788999999999999999985 4599887776666654
No 107
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=71.07 E-value=5.8 Score=30.21 Aligned_cols=38 Identities=16% Similarity=0.242 Sum_probs=29.3
Q ss_pred EEeeeeecCHHHHHHHhhccCCCcccccceeeeeeEEEE
Q 019858 231 KAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEE 269 (335)
Q Consensus 231 kavgvV~aspe~IFe~lm~~d~~R~eWD~~~~~~~vVE~ 269 (335)
+....|.|||++||+.|.+++. ..+|..-.....+++.
T Consensus 2 ~~~~~i~a~~~~v~~~l~d~~~-~~~~~~~~~~~~~~~~ 39 (141)
T cd07812 2 EASIEIPAPPEAVWDLLSDPER-WPEWSPGLERVEVLGG 39 (141)
T ss_pred cEEEEeCCCHHHHHHHHhChhh-hhhhCcccceEEEcCC
Confidence 4567899999999999999874 6688777666665553
No 108
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=70.43 E-value=6 Score=32.41 Aligned_cols=35 Identities=17% Similarity=0.161 Sum_probs=27.9
Q ss_pred eeeeecCHHHHHHHhhccCCCcccccceeeeeeEEEE
Q 019858 233 VGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEE 269 (335)
Q Consensus 233 vgvV~aspe~IFe~lm~~d~~R~eWD~~~~~~~vVE~ 269 (335)
.-+|+|||++||++|-|++. -.+|.-. ....+++.
T Consensus 4 s~~i~ap~~~V~~~l~D~~~-~p~~~p~-~~~~~~~~ 38 (142)
T cd08861 4 SVTVAAPAEDVYDLLADAER-WPEFLPT-VHVERLEL 38 (142)
T ss_pred EEEEcCCHHHHHHHHHhHHh-hhccCCC-ceEEEEEE
Confidence 46899999999999999984 3378887 66666665
No 109
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=70.10 E-value=5.8 Score=42.96 Aligned_cols=98 Identities=18% Similarity=0.375 Sum_probs=57.6
Q ss_pred CCceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCC---CCccEEEEecCceEEeeC-Cc-ceecCceeEEEE
Q 019858 4 KVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDN---QVPIKTLLIDGNCRVEDR-GL-KTHHGHMVYVLS 78 (335)
Q Consensus 4 ~~~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~---~~Pirs~vid~~~rVed~-Gr-e~~hg~~~yvf~ 78 (335)
+.-.||||+|+-..---+ .+-|.-|+.|.+.+|...-..+ +.|+--+ +.|+-+ |- -.-.|...+.|.
T Consensus 412 t~~kEGWmvHyt~~d~lR---krHYWrldsk~itlfqn~s~~ryYkeIPLsEI-----l~v~~~~~~~~vp~~~~phcFE 483 (888)
T KOG4236|consen 412 TKLKEGWMVHYTSKDNLR---KRHYWRLDSKCITLFQNESTNRYYKEIPLSEI-----LSVSSNNGFSLVPAGTNPHCFE 483 (888)
T ss_pred hhhhcceEEEEechhhhh---hhhhheeccceeEeeecCCCceeEEeecHHHh-----heeeccCCcccCCCCCCCceEE
Confidence 345899999997654222 2568889999998887766554 6665433 334443 32 123455667776
Q ss_pred EE------ecCCC-cc-eEEEeecCHHHHHHHHHHHHHH
Q 019858 79 VY------NKKEK-YH-RITMAAFNIQEALIWKEKIELV 109 (335)
Q Consensus 79 iy------n~~~~-~~-~~~laa~s~eea~~W~~a~~~A 109 (335)
|- .-.+. +. .+-=.-...+-|..|-.|++.|
T Consensus 484 I~T~~~vyfVge~p~~~~~~~~g~g~d~a~~w~~ai~~a 522 (888)
T KOG4236|consen 484 IRTATTVYFVGENPSSTPGGESGVGLDAAQGWETAIQQA 522 (888)
T ss_pred EEeeeEEEEecCCCCCCccccccccchhhccCchhhhhc
Confidence 54 22211 11 1000112255688999999999
No 110
>cd01240 PH_beta-ARK Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta ARK1 is a G protein-coupled receptor kinase (GRK). It phosphorylates activated G-protein coupled receptors leading to the release of the previously bound heterotrimeric G protein agonist and thus signal termination. It consists of a domain found in regulators of G-protein signaling (RGS)(RH), a serine/threonine kinase domain and a C-terminal PH domain. The Beta-Ark 1 PH domain has an extended C-terminal helix, which mediates interactions with G beta gamma subunits. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or
Probab=68.68 E-value=9.8 Score=33.02 Aligned_cols=103 Identities=17% Similarity=0.250 Sum_probs=62.9
Q ss_pred CceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEecCC
Q 019858 5 VVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKE 84 (335)
Q Consensus 5 ~~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~~~ 84 (335)
..++|.++++| +.+ ++=+-+|||=|=.|.|..|-...... .-.++.+.=.-|+.. -..+-|..--++.|-
T Consensus 3 cIvhGyi~KLG-GPF-ls~WQ~Ry~~LfPNRLE~~~~~~~~~---~eLi~M~~i~~V~~e-~~~iK~~~CI~ik~k---- 72 (116)
T cd01240 3 CIVHGYIKKLG-GPF-LSQWQTRYFKLYPNRLELYGESEANK---PELITMDQIEDVSVE-FQQIKEENCILLKIR---- 72 (116)
T ss_pred eEEeeehhhhC-CHH-HHHHHHHHheeCcceeeecccccccC---CcEEEeehhhhcchh-heeeccCceEEEEEc----
Confidence 45899999988 444 34456999999999999863322211 112222111111100 111122233333333
Q ss_pred CcceEEEeecCHHHHHHHHHHHHHHHhhhhhhh
Q 019858 85 KYHRITMAAFNIQEALIWKEKIELVIDQHQESQ 117 (335)
Q Consensus 85 ~~~~~~laa~s~eea~~W~~a~~~Ai~q~~~~~ 117 (335)
...++-|-+++.-+...|++.|.+|-+..|+.+
T Consensus 73 ~~~k~vlt~~d~i~l~qW~~elr~a~r~Sq~ll 105 (116)
T cd01240 73 DEKKIVLTNSDEIELKQWKKELRDAHRESQQLL 105 (116)
T ss_pred CCceEEEecCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 378888999999999999999999977776654
No 111
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=66.27 E-value=5.7 Score=32.07 Aligned_cols=36 Identities=8% Similarity=0.129 Sum_probs=29.2
Q ss_pred EEeeeeecCHHHHHHHhhccCCCcccccceeeeeeEE
Q 019858 231 KAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLV 267 (335)
Q Consensus 231 kavgvV~aspe~IFe~lm~~d~~R~eWD~~~~~~~vV 267 (335)
...-.|+|||++||+++-|++. -.+|..-+...+++
T Consensus 3 ~~~i~I~ap~e~V~~~~~D~~~-~~~w~~~~~~~~~~ 38 (139)
T cd07817 3 EKSITVNVPVEEVYDFWRDFEN-LPRFMSHVESVEQL 38 (139)
T ss_pred eEEEEeCCCHHHHHHHHhChhh-hHHHhhhhcEEEEc
Confidence 4567899999999999999974 66999877766555
No 112
>KOG3549 consensus Syntrophins (type gamma) [Extracellular structures]
Probab=64.70 E-value=7.2 Score=40.04 Aligned_cols=102 Identities=13% Similarity=0.183 Sum_probs=67.9
Q ss_pred CCceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCCC---ccEEEEe-cCceE-EeeCCcceecCceeEEEE
Q 019858 4 KVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQV---PIKTLLI-DGNCR-VEDRGLKTHHGHMVYVLS 78 (335)
Q Consensus 4 ~~~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~---Pirs~vi-d~~~r-Ved~Gre~~hg~~~yvf~ 78 (335)
.+.|-||+--.--+++..|-.+.||+.|+|-.+..|-..|..--. ..++.-+ .--|+ |.|--.. -+..|.|.
T Consensus 280 qivyMGWvne~~q~~~s~q~y~P~FLaLkG~~~y~F~tPPv~t~dw~rAe~ty~vye~mfki~Kdsd~~---D~R~~CF~ 356 (505)
T KOG3549|consen 280 QIVYMGWVNEGVQNNISWQSYKPRFLALKGTEVYLFETPPVNTADWSRAEVTYKVYETMFKIVKDSDTV---DSRQHCFL 356 (505)
T ss_pred eEEEeeeccccccCcccccccCceeEEecCcEEEEEcCCCcchhhhhhhhhhHHHHHHHHHHhcccccc---ccccceEE
Confidence 456999999988899999999999999999999888777754310 0000000 00000 1111011 13457888
Q ss_pred EEecCCCcceEEEeecCHHHHHHHHHHHHHHH
Q 019858 79 VYNKKEKYHRITMAAFNIQEALIWKEKIELVI 110 (335)
Q Consensus 79 iyn~~~~~~~~~laa~s~eea~~W~~a~~~Ai 110 (335)
|-... ..-.-|..+...|.++|-++|+.|+
T Consensus 357 ~qs~~--ge~~yfsVEl~seLa~wE~sfq~At 386 (505)
T KOG3549|consen 357 LQSSG--GEPRYFSVELRSELARWENSFQAAT 386 (505)
T ss_pred EEcCC--CCceEEEEehhhHHHHHHHHHhhHH
Confidence 87654 4445577899999999999999994
No 113
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=64.14 E-value=10 Score=30.49 Aligned_cols=38 Identities=18% Similarity=0.307 Sum_probs=28.6
Q ss_pred eEEeeeeecCHHHHHHHhhccCCCcccccceeeeeeEEE
Q 019858 230 MKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVE 268 (335)
Q Consensus 230 ~kavgvV~aspe~IFe~lm~~d~~R~eWD~~~~~~~vVE 268 (335)
+...-.|+|||++||+.+-+++. -.+|...+...++.+
T Consensus 3 ~~~~~~i~Ap~~~Vw~~~~d~~~-~~~w~~~~~~~~~~~ 40 (138)
T cd08862 3 FEATIVIDAPPERVWAVLTDVEN-WPAWTPSVETVRLEG 40 (138)
T ss_pred EEEEEEEcCCHHHHHHHHHhhhh-cccccCcceEEEEec
Confidence 34567899999999999999874 568987655544443
No 114
>PF15405 PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A.
Probab=62.33 E-value=16 Score=31.80 Aligned_cols=39 Identities=26% Similarity=0.233 Sum_probs=29.9
Q ss_pred CceeEEEEEEecCCCcceEEEeecCHHHHHHHHHHHHHH
Q 019858 71 GHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELV 109 (335)
Q Consensus 71 g~~~yvf~iyn~~~~~~~~~laa~s~eea~~W~~a~~~A 109 (335)
.+..|-|+|-.-..+...++|=|.|..+-.+|+++|+++
T Consensus 96 ~~~~yp~~~~hlG~~~~~~TLyA~s~~~R~~W~e~I~~q 134 (135)
T PF15405_consen 96 SKSLYPFTFRHLGRKGYSYTLYASSAQARQKWLEKIEEQ 134 (135)
T ss_dssp TSSEEEEEE---GGG-EEEEEE-SSHHHHHHHHHHHHHH
T ss_pred CCCccCEEEEEcCCCceEEEEEeCCHHHHHHHHHHHHhc
Confidence 478999999655555556999999999999999999986
No 115
>KOG4047 consensus Docking protein 1 (p62dok) [Signal transduction mechanisms]
Probab=59.61 E-value=8.5 Score=39.98 Aligned_cols=101 Identities=14% Similarity=0.018 Sum_probs=68.5
Q ss_pred CCCCceeeeEEEeeecccccccceeeEEEEecc-------eeeecccCCCCC---CCcc-EEEEecCceEEeeCCcceec
Q 019858 2 SSKVVYEGWMVRYGRRKIGRSFIHMRYFVLESR-------LLAYYKKKPQDN---QVPI-KTLLIDGNCRVEDRGLKTHH 70 (335)
Q Consensus 2 ~~~~~~EGWly~~g~~~~g~q~~~~RyFVL~g~-------~l~~YK~~P~~~---~~Pi-rs~vid~~~rVed~Gre~~h 70 (335)
.+-.++.|.++... +|+|---.+++|.||..- ++.++-+++... .-=+ |.+-+ .+|.=-+.|++-.-
T Consensus 5 ~~~~~k~g~~~~~~-~r~~~k~~~~~~~~L~~gs~~g~aRle~~~~~g~~~~~~~~~~~rR~~~l-s~~~S~e~~~~~~~ 82 (429)
T KOG4047|consen 5 CSCLVKDGVPDNHR-NKFKVKNVRDDGAELGSGSMELTARLEILESRGRESVRWPYRCLRRYGYL-SNLFSFESGRRCQT 82 (429)
T ss_pred cCcccccCccchhh-hhhccccccccceeeeccccccchhhhhhhccCCcccccchhcceeeEee-ccceeeeccccccc
Confidence 35567888888754 899988889999999763 344332222111 3334 45555 55544444566556
Q ss_pred CceeEEEEEEecCCCcceEEEeecCHHHHHHHHHHHHHH
Q 019858 71 GHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELV 109 (335)
Q Consensus 71 g~~~yvf~iyn~~~~~~~~~laa~s~eea~~W~~a~~~A 109 (335)
|.-+|+|-.-+..+ .|.|.+.-+++.|+.+|..-
T Consensus 83 ~~~i~~~f~~~a~e-----~~~~~q~l~~~~w~~~i~~~ 116 (429)
T KOG4047|consen 83 GPGITAFFCDRAEE-----LFNMLQDLMQANWINAIEEP 116 (429)
T ss_pred CCCceEEEecchHH-----HHHHHHHHHhhhhhhhhhhc
Confidence 77888887777655 78899999999999999654
No 116
>KOG0248 consensus Cytoplasmic protein Max-1, contains PH, MyTH4 and FERM domains [Cytoskeleton]
Probab=58.74 E-value=11 Score=41.57 Aligned_cols=100 Identities=13% Similarity=0.313 Sum_probs=66.3
Q ss_pred eeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEecCCCc
Q 019858 7 YEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEKY 86 (335)
Q Consensus 7 ~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~~~~~ 86 (335)
..|.....+ .++| +..+||||++.-...+|+.+-..-+.|-...=|-..|..+ .+..-|.|-+- ..+
T Consensus 251 kSgy~~~~~-s~~k--~lkrr~~v~k~gqi~~y~~~~~~~~~p~s~~d~~s~~~~~-------~~~~s~~fqli---~~t 317 (936)
T KOG0248|consen 251 KSGYWTQLT-SRIK--SLKRRYVVFKNGQISFYRKHNNRDEEPASKIDIRSVTKLE-------QQGAAYAFQLI---TST 317 (936)
T ss_pred cccchhcch-HHHH--HHHhHheeeccceEEEEEcCCCccccccCcccccccceee-------ccchhHHhhhh---hhc
Confidence 556666666 3443 3468999999999987765443224554444343444433 33344444432 457
Q ss_pred ceEEEeecCHHHHHHHHHHHHHHHhhhhhhhcc
Q 019858 87 HRITMAAFNIQEALIWKEKIELVIDQHQESQVS 119 (335)
Q Consensus 87 ~~~~laa~s~eea~~W~~a~~~Ai~q~~~~~~~ 119 (335)
+++.+-+.|.--.+.|+.-|+.+|+-++....+
T Consensus 318 ~~~~~~~~s~~lt~dw~~iL~~~iKv~~~~~~a 350 (936)
T KOG0248|consen 318 DKMNFMTESERTTHDWVTILSAAIKATTLREMA 350 (936)
T ss_pred eeEEEeccChhhhhhhHHHHHHHHHHHhccchh
Confidence 899999999999999999999999977665443
No 117
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=57.37 E-value=12 Score=31.52 Aligned_cols=37 Identities=14% Similarity=0.223 Sum_probs=30.4
Q ss_pred EEeeeeecCHHHHHHHhhccCCCcccccceeeeeeEEE
Q 019858 231 KAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVE 268 (335)
Q Consensus 231 kavgvV~aspe~IFe~lm~~d~~R~eWD~~~~~~~vVE 268 (335)
-.+-.|+||||.||++|-|++. -.+|...+....+++
T Consensus 4 ~~~~~i~ap~e~Vw~~~tD~~~-~~~w~~~v~~~~~~~ 40 (146)
T cd07824 4 HTVWRIPAPPEAVWDVLVDAES-WPDWWPGVERVVELE 40 (146)
T ss_pred eEEEEecCCHHHHHHHHhChhh-cchhhhceEEEEEcc
Confidence 4567899999999999999873 449998887777776
No 118
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=56.26 E-value=5.9 Score=43.41 Aligned_cols=94 Identities=22% Similarity=0.397 Sum_probs=65.3
Q ss_pred eeeeEEEeeecccccccceeeEEEEecc--e---eeecccCCCCCCCccEEEEecCceEEee----CCcceecCceeEEE
Q 019858 7 YEGWMVRYGRRKIGRSFIHMRYFVLESR--L---LAYYKKKPQDNQVPIKTLLIDGNCRVED----RGLKTHHGHMVYVL 77 (335)
Q Consensus 7 ~EGWly~~g~~~~g~q~~~~RyFVL~g~--~---l~~YK~~P~~~~~Pirs~vid~~~rVed----~Gre~~hg~~~yvf 77 (335)
+.|++|-+|+|- +.-+.||||||--- + +-.|.++. .+|-.-+-+|+. .|.- -|.+- |+.
T Consensus 466 hsgylyaig~nv--wkrwkkrffvlvqvsqytfamcsyrekk---aepqel~qldgy-tvdytdp~pglqg--g~~---- 533 (1218)
T KOG3543|consen 466 HSGYLYAIGRNV--WKRWKKRFFVLVQVSQYTFAMCSYREKK---AEPQELIQLDGY-TVDYTDPSPGLQG--GKH---- 533 (1218)
T ss_pred cceeehhhhhHH--HHHhHhhEEEEEEhhhhhhHhhhhhhcc---cChHHHhhccCe-eeccCCCCCcccc--chH----
Confidence 889999999764 45578999999632 1 11355544 355555666444 3432 13332 333
Q ss_pred EEEecCCCcceEEEeecCHHHHHHHHHHHHHHHhhh
Q 019858 78 SVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQH 113 (335)
Q Consensus 78 ~iyn~~~~~~~~~laa~s~eea~~W~~a~~~Ai~q~ 113 (335)
++|.-...+.+.||-.+.+|---|.+|+-.|-+|.
T Consensus 534 -ffnavkegdtvifasddeqdr~lwvqamyratgqs 568 (1218)
T KOG3543|consen 534 -FFNAVKEGDTVIFASDDEQDRHLWVQAMYRATGQS 568 (1218)
T ss_pred -HHHHhccCceEEeccCchhhhhHHHHHHHHhhCCc
Confidence 35778889999999999999999999999997775
No 119
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=55.61 E-value=13 Score=30.40 Aligned_cols=28 Identities=21% Similarity=0.275 Sum_probs=23.4
Q ss_pred EEeeeeecCHHHHHHHhhccCCCcccccc
Q 019858 231 KAVGVVEASCEEIFELVMSMDGTRYEWDC 259 (335)
Q Consensus 231 kavgvV~aspe~IFe~lm~~d~~R~eWD~ 259 (335)
...-+|+|||+.||+.+-|++. ..+|+.
T Consensus 3 ~~~~~i~ap~e~Vw~~l~d~~~-~~~W~~ 30 (144)
T cd07825 3 SVSRTVDAPAEAVFAVLADPRR-HPEIDG 30 (144)
T ss_pred EEEEEEeCCHHHHHHHHhCccc-cceeCC
Confidence 4456789999999999999974 779984
No 120
>KOG1739 consensus Serine/threonine protein kinase GPBP [Signal transduction mechanisms; Defense mechanisms]
Probab=54.87 E-value=11 Score=40.02 Aligned_cols=85 Identities=20% Similarity=0.361 Sum_probs=47.3
Q ss_pred eeeeEEEeeeccc------ccccceeeEEEEecceeeecccCCCCC-----CCccEEEEecCceEEeeCCcceecCceeE
Q 019858 7 YEGWMVRYGRRKI------GRSFIHMRYFVLESRLLAYYKKKPQDN-----QVPIKTLLIDGNCRVEDRGLKTHHGHMVY 75 (335)
Q Consensus 7 ~EGWly~~g~~~~------g~q~~~~RyFVL~g~~l~~YK~~P~~~-----~~Pirs~vid~~~rVed~Gre~~hg~~~y 75 (335)
-.||+=+.|.=.- |+| .|||||+.+-|.|||..-... -.-+.+++|+.+ .-.--
T Consensus 20 ~dgw~e~~G~lskwtnyi~gwq---dRyv~lk~g~Lsyykse~E~~hGcRgsi~l~ka~i~ah------------EfDe~ 84 (611)
T KOG1739|consen 20 SDGWVERCGVLSKWTNYIHGWQ---DRYVVLKNGALSYYKSEDETEHGCRGSICLSKAVITAH------------EFDEC 84 (611)
T ss_pred cCCchhhcceeeeeeccccccc---ceEEEEcccchhhhhhhhhhhcccceeeEeccCCcccc------------cchhh
Confidence 3577754443332 456 999999999999999876543 233334444222 11112
Q ss_pred EEEEEecCCCcceEEEeecCHHHHHHHHHHHHHH
Q 019858 76 VLSVYNKKEKYHRITMAAFNIQEALIWKEKIELV 109 (335)
Q Consensus 76 vf~iyn~~~~~~~~~laa~s~eea~~W~~a~~~A 109 (335)
.|.|-- ...-..+-|...+.-..|+++|+.-
T Consensus 85 rfdIsv---n~nv~~lra~~~~hr~~w~d~L~wm 115 (611)
T KOG1739|consen 85 RFDISV---NDNVWYLRAQDPDHRQQWIDALEWM 115 (611)
T ss_pred eeeeEe---ccceeeehhcCcHHHHHHHHHHHHH
Confidence 222221 1334455566666666666666544
No 121
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=54.72 E-value=14 Score=29.35 Aligned_cols=35 Identities=23% Similarity=0.362 Sum_probs=26.2
Q ss_pred EeeeeecCHHHHHHHhhccCCCcccccceeeeeeEE
Q 019858 232 AVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLV 267 (335)
Q Consensus 232 avgvV~aspe~IFe~lm~~d~~R~eWD~~~~~~~vV 267 (335)
..-.|+|||++||++|-|++. ..+|.......+++
T Consensus 3 ~~~~i~ap~~~Vw~~l~d~~~-~~~w~~~~~~~~~~ 37 (140)
T cd08865 3 ESIVIERPVEEVFAYLADFEN-APEWDPGVVEVEKI 37 (140)
T ss_pred eEEEEcCCHHHHHHHHHCccc-hhhhccCceEEEEc
Confidence 456799999999999999873 45898766544433
No 122
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=53.77 E-value=27 Score=28.97 Aligned_cols=51 Identities=20% Similarity=0.172 Sum_probs=37.4
Q ss_pred EeeeeecCHHHHHHHhhccCCCcccccceeeeeeEEEEEeCcc---cEEEEEEee
Q 019858 232 AVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHT---AILYHRLQL 283 (335)
Q Consensus 232 avgvV~aspe~IFe~lm~~d~~R~eWD~~~~~~~vVE~iD~Ht---dIvy~~~~p 283 (335)
..-.|+||||+||+.+.+++. -.+|.-.+...++++.-++.. +++..++++
T Consensus 3 ~s~~I~ap~e~V~~~~~d~~~-~~~~~p~~~~v~~~~~~~~~~~~G~~~~~~~~~ 56 (137)
T cd07820 3 RSTVIPAPIEEVFDFHSRPDN-LERLTPPWLEFAVLGRTPGLIYGGARVTYRLRH 56 (137)
T ss_pred EEEEcCCCHHHHHHHHcCcch-HHhcCCCCCCeEEEecCCCcccCCcEEEEEEEe
Confidence 456799999999999999974 558888888888876444442 355556654
No 123
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=53.36 E-value=18 Score=29.97 Aligned_cols=29 Identities=28% Similarity=0.421 Sum_probs=24.0
Q ss_pred eEEeeeeecCHHHHHHHhhccCCCcccccc
Q 019858 230 MKAVGVVEASCEEIFELVMSMDGTRYEWDC 259 (335)
Q Consensus 230 ~kavgvV~aspe~IFe~lm~~d~~R~eWD~ 259 (335)
+...-+|+|||++||++|-|+.. -.+|+.
T Consensus 4 ~~~s~~I~ap~e~V~~~i~D~~~-~~~W~p 32 (150)
T cd07818 4 VERSIVINAPPEEVFPYVNDLKN-WPEWSP 32 (150)
T ss_pred EEEEEEEeCCHHHHHHHHhCccc-CcccCc
Confidence 45678899999999999999973 458975
No 124
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.
Probab=53.31 E-value=1.2e+02 Score=24.32 Aligned_cols=30 Identities=10% Similarity=0.102 Sum_probs=24.1
Q ss_pred eEEeeeeecCHHHHHHHhhccCCCcccccce
Q 019858 230 MKAVGVVEASCEEIFELVMSMDGTRYEWDCS 260 (335)
Q Consensus 230 ~kavgvV~aspe~IFe~lm~~d~~R~eWD~~ 260 (335)
+...-+|+|||+.||+.+.+.+. -.+|...
T Consensus 2 ~~~~~~i~ap~e~Vw~~~td~~~-~~~W~~~ 31 (136)
T cd08893 2 FVYVTYIRATPEKVWQALTDPEF-TRQYWGG 31 (136)
T ss_pred eEEEEEecCCHHHHHHHHcCchh-hhheecc
Confidence 44567899999999999999874 5588754
No 125
>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=51.80 E-value=90 Score=25.97 Aligned_cols=83 Identities=22% Similarity=0.271 Sum_probs=45.7
Q ss_pred eeeeEEEeeecccccccceeeEEEEecc-eeeecccCCCCCCCccEEEEecC-ceEEeeCCcceecCceeEEEEEEecCC
Q 019858 7 YEGWMVRYGRRKIGRSFIHMRYFVLESR-LLAYYKKKPQDNQVPIKTLLIDG-NCRVEDRGLKTHHGHMVYVLSVYNKKE 84 (335)
Q Consensus 7 ~EGWly~~g~~~~g~q~~~~RyFVL~g~-~l~~YK~~P~~~~~Pirs~vid~-~~rVed~Gre~~hg~~~yvf~iyn~~~ 84 (335)
+.|-+.+ +.|+ |.++|=|+|... .|.|+ +|... .-=+.+.+.+ +++|+- .+++.++ | .-
T Consensus 3 ~~g~v~K----r~gl-f~kkR~LiLTd~PrL~yv--dp~~~-~~KgeIp~s~~~l~v~~-----~~~~~F~---I---~T 63 (89)
T cd01262 3 KIGAVKK----RKGL-FAKKRQLILTNGPRLIYV--DPVKK-VVKGEIPWSDVELRVEV-----KNSSHFF---V---HT 63 (89)
T ss_pred eeeeeee----hhcc-ccceeeEEEecCceEEEE--cCCcC-eEEeEecccccceEEEE-----ecCccEE---E---EC
Confidence 4555555 3355 779999999753 34433 45433 1123333444 556664 1222333 3 23
Q ss_pred CcceEEEeecCHHHHHHHHHHHHHH
Q 019858 85 KYHRITMAAFNIQEALIWKEKIELV 109 (335)
Q Consensus 85 ~~~~~~laa~s~eea~~W~~a~~~A 109 (335)
.++.+-|- .-...|..|++|++++
T Consensus 64 p~rty~le-D~~~~a~~W~~~I~~~ 87 (89)
T cd01262 64 PNKVYSFE-DPKGRASQWKKAIEDL 87 (89)
T ss_pred CCceEEEE-CCCCCHHHHHHHHHHH
Confidence 45555552 3347899999999987
No 126
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=51.59 E-value=20 Score=28.55 Aligned_cols=28 Identities=18% Similarity=0.335 Sum_probs=22.8
Q ss_pred EEeeeeecCHHHHHHHhhccCCCcccccc
Q 019858 231 KAVGVVEASCEEIFELVMSMDGTRYEWDC 259 (335)
Q Consensus 231 kavgvV~aspe~IFe~lm~~d~~R~eWD~ 259 (335)
...-+|+|||++||+.|.+++. -..|..
T Consensus 3 ~~~~~i~ap~~~Vw~~~~d~~~-~~~w~~ 30 (141)
T cd07822 3 STEIEINAPPEKVWEVLTDFPS-YPEWNP 30 (141)
T ss_pred EEEEEecCCHHHHHHHHhcccc-ccccCh
Confidence 4567899999999999999874 557764
No 127
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]
Probab=50.28 E-value=39 Score=36.97 Aligned_cols=100 Identities=20% Similarity=0.305 Sum_probs=69.3
Q ss_pred CCCceeeeEEEeeecccccccceeeEEEE--ecceeeec--ccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEE
Q 019858 3 SKVVYEGWMVRYGRRKIGRSFIHMRYFVL--ESRLLAYY--KKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLS 78 (335)
Q Consensus 3 ~~~~~EGWly~~g~~~~g~q~~~~RyFVL--~g~~l~~Y--K~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~ 78 (335)
++..|||+||.-...+||-+ +-|=|-|- +.+.+.|- -.+|..++-|.-+.++-.|.|=- -+++ .-=|.|.
T Consensus 263 ~p~t~eGYlY~QEK~~~g~s-WvKyYC~Y~retk~~TMvp~~qk~g~k~g~~~~~~lKsC~RRk---tdSI--dKRFCFD 336 (812)
T KOG1451|consen 263 TPSTKEGYLYMQEKSKIGKS-WVKYYCVYSRETKIFTMVPANQKTGTKMGQTATFKLKSCSRRK---TDSI--DKRFCFD 336 (812)
T ss_pred CCcccceeeeehhhhhccch-hhhheeEeecccceEEEeecccCCCCcCCCcceEEehhhccCc---cccc--ccceeee
Confidence 45569999999999999975 33444443 23444442 23344446788888886666522 2333 3457787
Q ss_pred EEecCCCcceEEEeecCHHHHHHHHHHHHHH
Q 019858 79 VYNKKEKYHRITMAAFNIQEALIWKEKIELV 109 (335)
Q Consensus 79 iyn~~~~~~~~~laa~s~eea~~W~~a~~~A 109 (335)
|.- .+....++|-|-|.++-.-||+|..-|
T Consensus 337 ve~-~erpgviTmQALSE~drrlWmeAMDG~ 366 (812)
T KOG1451|consen 337 VEV-EERPGVITMQALSEKDRRLWMEAMDGA 366 (812)
T ss_pred eee-cccCCeeehHhhhhhHHHHHHHHhcCC
Confidence 765 488899999999999999999998777
No 128
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=47.34 E-value=22 Score=40.20 Aligned_cols=38 Identities=18% Similarity=0.231 Sum_probs=33.0
Q ss_pred ceeEEEEEEecCCCcceEEEeecCHHHHHHHHHHHHHH
Q 019858 72 HMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELV 109 (335)
Q Consensus 72 ~~~yvf~iyn~~~~~~~~~laa~s~eea~~W~~a~~~A 109 (335)
+..|||.|--+.-...-+.+||.|.|||-.|.++|+++
T Consensus 872 ~~~~vf~l~~~~~~~~~~~~aadsqEe~~eW~k~i~E~ 909 (1267)
T KOG1264|consen 872 QKSFVFILEPKWQGKPPVEFAADSQEELFEWFKSIREI 909 (1267)
T ss_pred CcceEEEechhhhcCCceEEecCchHHHHHHHHHHHHH
Confidence 46788888766667778999999999999999999987
No 129
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=45.90 E-value=14 Score=31.34 Aligned_cols=70 Identities=14% Similarity=0.047 Sum_probs=43.0
Q ss_pred eeecCHHHHHHHhhccCCCcccccceeeeeeEEEEEeCcccEEEEEEeeCcccCcccCceeEEEEeeEecCCCcEEEEE
Q 019858 235 VVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYGSMR 313 (335)
Q Consensus 235 vV~aspe~IFe~lm~~d~~R~eWD~~~~~~~vVE~iD~HtdIvy~~~~p~wlp~~~~~RDlv~~RyWrR~~DGsYvIl~ 313 (335)
.|.++|++|++.|+|++ .|=.|+-....+|.++++.+.. .+.+-- | ++.+==.-.++=..++...|.|..
T Consensus 4 ~v~a~~~~vw~~l~D~~----~l~~ciPG~~~~e~~~~~~~~~-~~v~vG--~--i~~~~~g~~~~~~~~~~~~~~~~~ 73 (140)
T PF06240_consen 4 EVPAPPEKVWAFLSDPE----NLARCIPGVESIEKVGDEYKGK-VKVKVG--P--IKGTFDGEVRITEIDPPESYTLEF 73 (140)
T ss_dssp EECS-HHHHHHHHT-HH----HHHHHSTTEEEEEEECTEEEEE-EEEESC--C--CEEEEEEEEEEEEEETTTEEEEEE
T ss_pred EecCCHHHHHHHhcCHH----HHHhhCCCcEEeeecCcEEEEE-EEEEec--c--EEEEEEEEEEEEEcCCCcceEeee
Confidence 58999999999999886 5788999999999999555443 333311 1 222223333444455555554433
No 130
>cd01226 PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exo84 is a subunit of the exocyt complex, which is important in intracellular trafficking. In metazoa, Exo84 has a PH domain towards its N-terminus. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=44.94 E-value=95 Score=26.23 Aligned_cols=92 Identities=15% Similarity=0.181 Sum_probs=51.5
Q ss_pred ceeeeEEEeeecccccccceeeEEEEecceeeecc-cCCCCC---CCccEEEEecCceEEeeCCcceecCceeEEEEEEe
Q 019858 6 VYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYK-KKPQDN---QVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYN 81 (335)
Q Consensus 6 ~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK-~~P~~~---~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn 81 (335)
.++|=|+-+..+.. .+-++-+.|++...+|--.. .+...+ ..|+.++.+ .| |.|+| ++-.+|.|.-
T Consensus 3 i~~G~l~e~~~~~~-kp~~rv~~FLfND~Lvva~~~~~~ky~~~~~~~L~~i~V-~n--i~D~~------~~kNafki~t 72 (100)
T cd01226 3 ILYGELEEFDVETK-KPVQRVMLFLLNDRLIVGNINAAGKYVMESTYSLNSVAV-VN--VKDRE------NAKKVLKLLI 72 (100)
T ss_pred EEcCcEEEechhhC-CccceEEEEEeccEEEEEEecccceEEEEEEEehHHeEE-Ee--cCCCc------CcCceEEEEe
Confidence 35565666555444 22344457888777775422 111111 344443333 11 12222 3555666654
Q ss_pred cCCCcceEEEeecCHHHHHHHHHHHHHHH
Q 019858 82 KKEKYHRITMAAFNIQEALIWKEKIELVI 110 (335)
Q Consensus 82 ~~~~~~~~~laa~s~eea~~W~~a~~~Ai 110 (335)
. .+++ -+.|+|+++-..|+..|++|+
T Consensus 73 ~-~~s~--i~qaes~~~K~eWl~~le~a~ 98 (100)
T cd01226 73 F-PESR--IYQCESARIKTEWFEELEQAK 98 (100)
T ss_pred C-CccE--EEEeCCHHHHHHHHHHHHHHh
Confidence 3 3333 377999999999999999995
No 131
>KOG1738 consensus Membrane-associated guanylate kinase-interacting protein/connector enhancer of KSR-like [Nucleotide transport and metabolism]
Probab=43.27 E-value=6.8 Score=42.38 Aligned_cols=38 Identities=18% Similarity=0.372 Sum_probs=34.1
Q ss_pred ceeeeEEEeeecccccccceeeEEEEecceeeecccCC
Q 019858 6 VYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKP 43 (335)
Q Consensus 6 ~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P 43 (335)
+.+||+++.+-|+.+-+++++=||||.+..|.-|..+-
T Consensus 563 ~~qg~~~r~k~~~~~~~kW~k~~~~l~~~~l~~y~n~~ 600 (638)
T KOG1738|consen 563 DRQGWLTRLKLNHLTQEKWRKIWMVLNDDPLLNYRNHR 600 (638)
T ss_pred hhhccchhhccchHHHHHhhhheeeecCchhhhhhhhh
Confidence 47899999999999999999999999999998786444
No 132
>KOG3531 consensus Rho guanine nucleotide exchange factor CDEP [Signal transduction mechanisms]
Probab=43.15 E-value=5.9 Score=44.37 Aligned_cols=92 Identities=20% Similarity=0.215 Sum_probs=71.5
Q ss_pred eeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeC-CcceecCceeEEEEEEecCCC
Q 019858 7 YEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDR-GLKTHHGHMVYVLSVYNKKEK 85 (335)
Q Consensus 7 ~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~-Gre~~hg~~~yvf~iyn~~~~ 85 (335)
-.|.|+++=.|+=|+| |=|.|...-+|++||.... ..|+-++-| =|..|..- --+.+ +-=|||.+-. +
T Consensus 926 Lsg~Llrkfknssgwq---kLwvvft~fcl~fyKS~qD--~~~laslPl-Lgysvs~P~~~d~i--~K~~vfkl~f---k 994 (1036)
T KOG3531|consen 926 LSGYLLRKFKNSSGWQ---KLWVVFTNFCLFFYKSHQD--SEPLASLPL-LGYSVSIPAEPDPI--QKDYVFKLKF---K 994 (1036)
T ss_pred hhHHHHHHhhccccce---eeeeeecceeeEeeccccc--ccccccccc-cccccCCCCCCCCc--chhheeeeeh---h
Confidence 4677888888888999 9999999999999998763 367777777 44666543 22333 3347888765 4
Q ss_pred cceEEEeecCHHHHHHHHHHHHHH
Q 019858 86 YHRITMAAFNIQEALIWKEKIELV 109 (335)
Q Consensus 86 ~~~~~laa~s~eea~~W~~a~~~A 109 (335)
++.+-|+|++.-.-++||+.|+.|
T Consensus 995 ~hvyffraes~yt~~rw~evi~~a 1018 (1036)
T KOG3531|consen 995 SHVYFFRAESYYTFERWMEVITDA 1018 (1036)
T ss_pred hhHHHHhhhhhhhhhhHHHHhhcC
Confidence 788899999999999999999998
No 133
>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=42.87 E-value=28 Score=29.37 Aligned_cols=31 Identities=23% Similarity=0.267 Sum_probs=26.4
Q ss_pred EEEEecCCCcceEEEeecCHHHHHHHHHHHHHH
Q 019858 77 LSVYNKKEKYHRITMAAFNIQEALIWKEKIELV 109 (335)
Q Consensus 77 f~iyn~~~~~~~~~laa~s~eea~~W~~a~~~A 109 (335)
|.+.|+. .+.+++-|.|.+|-+.||++|...
T Consensus 63 ~~~~~~~--~KSf~~~asS~~Er~eW~~hI~~~ 93 (96)
T cd01228 63 FRIHNKN--GKSYTFLLSSDYERSEWRESIQKL 93 (96)
T ss_pred hhccccC--CceEEEEecCHHHHHHHHHHHHHH
Confidence 7777553 788999999999999999999765
No 134
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=42.39 E-value=26 Score=29.35 Aligned_cols=35 Identities=17% Similarity=0.167 Sum_probs=24.0
Q ss_pred eeeeecCHHHHHHHhhccCCCcccccceeeeeeEEEEEe
Q 019858 233 VGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVD 271 (335)
Q Consensus 233 vgvV~aspe~IFe~lm~~d~~R~eWD~~~~~~~vVE~iD 271 (335)
.-.|+|+|+.|++.|.|++. -..| +.....+|.++
T Consensus 4 ~~~v~a~pe~vw~~l~D~~~-~~~~---~pg~~~~~~~~ 38 (146)
T cd07823 4 EFTVPAPPDRVWALLLDIER-VAPC---LPGASLTEVEG 38 (146)
T ss_pred eEEecCCHHHHHHHhcCHHH-HHhc---CCCceeccccC
Confidence 34699999999999999873 2245 44444455444
No 135
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=42.21 E-value=12 Score=40.61 Aligned_cols=96 Identities=22% Similarity=0.362 Sum_probs=58.4
Q ss_pred eeeeEE-EeeecccccccceeeEEEEecceeeecccCCCCC--CCccEEEEecCceEEe-eCCcceecCceeEEEEEEec
Q 019858 7 YEGWMV-RYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDN--QVPIKTLLIDGNCRVE-DRGLKTHHGHMVYVLSVYNK 82 (335)
Q Consensus 7 ~EGWly-~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~--~~Pirs~vid~~~rVe-d~Gre~~hg~~~yvf~iyn~ 82 (335)
.||=|- ++|+=++ +.=++.|||-|.|-.|.|-|-+-.+. .-||..--|-+=--|. .+|+++ -.=+|.|+-.
T Consensus 737 iEGQLKEKKGrWRf-~kRW~TrYFTLSgA~L~~~kg~s~~dS~~~~IDl~~IRSVk~v~~kr~~rs----lpKAFEIFTA 811 (851)
T KOG3723|consen 737 IEGQLKEKKGRWRF-IKRWKTRYFTLSGAQLLFQKGKSKDDSDDCPIDLSKIRSVKAVAKKRRDRS----LPKAFEIFTA 811 (851)
T ss_pred hcchhhhhccchhh-hhhhccceEEecchhhhcccCCCCCCCCCCCccHHHhhhHHHHHhhhhhcc----cchhhheeec
Confidence 444332 3333333 33367999999999999545443332 3344433331111122 244554 4557777754
Q ss_pred CCCcceEEEeecCHHHHHHHHHHHHHHH
Q 019858 83 KEKYHRITMAAFNIQEALIWKEKIELVI 110 (335)
Q Consensus 83 ~~~~~~~~laa~s~eea~~W~~a~~~Ai 110 (335)
|++ +-|-|.+..-|+.|.+.|+=|+
T Consensus 812 -D~T--~ILKaKDeKNAEEWlqCL~Iav 836 (851)
T KOG3723|consen 812 -DKT--YILKAKDEKNAEEWLQCLNIAV 836 (851)
T ss_pred -Cce--EEeecccccCHHHHHHHHHHHH
Confidence 555 7888999999999999999884
No 136
>cd00837 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. The EVH1 domain binds to other proteins at proline rich sequences in either FPPPP or PPXXF motifs. It is found in the cytoskeletal reorganization proteins Enabled VASP, and WASP, and in the synaptic scaffolding protein Homer. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=40.60 E-value=2.1e+02 Score=23.56 Aligned_cols=24 Identities=13% Similarity=0.037 Sum_probs=20.3
Q ss_pred cceEEEeecCHHHHHHHHHHHHHH
Q 019858 86 YHRITMAAFNIQEALIWKEKIELV 109 (335)
Q Consensus 86 ~~~~~laa~s~eea~~W~~a~~~A 109 (335)
+.++=|.-.|.+||....+++++|
T Consensus 80 ~~~~GL~F~se~eA~~F~~~v~~~ 103 (104)
T cd00837 80 NCVYGLNFASEEEAAQFRKKVLEA 103 (104)
T ss_pred CcEEEEeeCCHHHHHHHHHHHHhc
Confidence 456777788999999999999877
No 137
>PF15406 PH_6: Pleckstrin homology domain
Probab=40.16 E-value=81 Score=27.37 Aligned_cols=54 Identities=19% Similarity=0.309 Sum_probs=38.9
Q ss_pred CCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEecCCCcceEEEeecCHHHHHHHHHHHH
Q 019858 43 PQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIE 107 (335)
Q Consensus 43 P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~~~~~~~~~laa~s~eea~~W~~a~~ 107 (335)
..|...|-+.+-+-+-.-|+..| ..=|.|++ +.++-+|=|.|.+|=..|+-+|+
T Consensus 57 ~~dka~P~GiinLadase~~~~g------~~kF~f~~-----~G~khtF~A~s~aERD~Wv~~lk 110 (112)
T PF15406_consen 57 AEDKASPSGIINLADASEPEKDG------SNKFHFKI-----KGHKHTFEAASAAERDNWVAQLK 110 (112)
T ss_pred cccccCCcceEehhhccccccCC------CceEEEEe-----CCceeeeecCCHHHhccHHHHhh
Confidence 55667887777775555555544 34467766 45666777999999999999986
No 138
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=39.82 E-value=69 Score=27.51 Aligned_cols=30 Identities=3% Similarity=0.030 Sum_probs=25.4
Q ss_pred CCcceEEEeecCHHHHHHHHHHHHHHHhhh
Q 019858 84 EKYHRITMAAFNIQEALIWKEKIELVIDQH 113 (335)
Q Consensus 84 ~~~~~~~laa~s~eea~~W~~a~~~Ai~q~ 113 (335)
+...++=|.-.|.+||.+..++++.||++.
T Consensus 81 ~~~~v~GLnF~Se~eA~~F~~~v~~Al~~L 110 (111)
T cd01207 81 DARQVYGLNFGSKEDATMFASAMLSALEVL 110 (111)
T ss_pred cCCeEEeeccCCHHHHHHHHHHHHHHHHhh
Confidence 445678888999999999999999998753
No 139
>PF14784 ECIST_Cterm: C-terminal domain of the ECSIT protein
Probab=36.47 E-value=1e+02 Score=27.05 Aligned_cols=19 Identities=11% Similarity=0.230 Sum_probs=15.5
Q ss_pred EeecCHHHHHHHHHHHHHH
Q 019858 91 MAAFNIQEALIWKEKIELV 109 (335)
Q Consensus 91 laa~s~eea~~W~~a~~~A 109 (335)
.|..+...+++||+-||+-
T Consensus 94 tg~~~~~sL~~WI~~Lq~~ 112 (126)
T PF14784_consen 94 TGTSDKDSLLSWIRGLQET 112 (126)
T ss_pred ccCCCHHHHHHHHHHHHhh
Confidence 3567788999999999874
No 140
>COG3832 Uncharacterized conserved protein [Function unknown]
Probab=36.41 E-value=67 Score=27.80 Aligned_cols=32 Identities=19% Similarity=0.378 Sum_probs=27.8
Q ss_pred ccceEEeeeeecCHHHHHHHhhccCCCcccccc
Q 019858 227 SRAMKAVGVVEASCEEIFELVMSMDGTRYEWDC 259 (335)
Q Consensus 227 ~~~~kavgvV~aspe~IFe~lm~~d~~R~eWD~ 259 (335)
...++.-.+|++||+.||+++.+++ .+.+|=+
T Consensus 7 ~~~~~~er~i~aP~e~Vf~A~Tdpe-~l~~W~~ 38 (149)
T COG3832 7 DRTLEIERLIDAPPEKVFEALTDPE-LLARWFM 38 (149)
T ss_pred CceEEEEEeecCCHHHHHHHhcCHH-HHHhhcC
Confidence 4688889999999999999999887 4778866
No 141
>TIGR02837 spore_II_R stage II sporulation protein R. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage II sporulation protein R.
Probab=32.73 E-value=83 Score=29.02 Aligned_cols=31 Identities=16% Similarity=0.029 Sum_probs=24.2
Q ss_pred eecCHHHHHHHHHHHHHHHhhhhhhhccCCC
Q 019858 92 AAFNIQEALIWKEKIELVIDQHQESQVSNGN 122 (335)
Q Consensus 92 aa~s~eea~~W~~a~~~Ai~q~~~~~~~~~~ 122 (335)
.+.|.|||++|++.=..-|++.++..+++.+
T Consensus 74 ~~~s~~ea~~~i~~~l~~Ie~~a~~~l~~~G 104 (168)
T TIGR02837 74 GLKSLEEARRVIRENLPEIERIAESVIKAEG 104 (168)
T ss_pred cCCCHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 6789999999998877777777666665544
No 142
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=31.46 E-value=37 Score=27.15 Aligned_cols=29 Identities=10% Similarity=0.103 Sum_probs=22.5
Q ss_pred eEEeeeeecCHHHHHHHhhccCCCcccccc
Q 019858 230 MKAVGVVEASCEEIFELVMSMDGTRYEWDC 259 (335)
Q Consensus 230 ~kavgvV~aspe~IFe~lm~~d~~R~eWD~ 259 (335)
+...-+|+|||++||++|.+++. -.+|..
T Consensus 2 i~~s~~I~a~~~~Vw~~l~d~~~-~~~w~~ 30 (139)
T cd07814 2 ITIEREFDAPPELVWRALTDPEL-LAQWFG 30 (139)
T ss_pred eEEEEEecCCHHHHHHHcCCHHH-HHhhhC
Confidence 45567899999999999998863 346654
No 143
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=31.38 E-value=45 Score=27.16 Aligned_cols=30 Identities=10% Similarity=0.207 Sum_probs=23.9
Q ss_pred eEEeeeeecCHHHHHHHhhccCCCcccccce
Q 019858 230 MKAVGVVEASCEEIFELVMSMDGTRYEWDCS 260 (335)
Q Consensus 230 ~kavgvV~aspe~IFe~lm~~d~~R~eWD~~ 260 (335)
+...-+|+|||+.||+++-+++. -.+|...
T Consensus 3 i~~~i~i~a~~e~Vw~~~td~~~-~~~W~~~ 32 (145)
T cd08898 3 IERTILIDAPRERVWRALTDPEH-FGQWFGV 32 (145)
T ss_pred eEEEEEecCCHHHHHHHhcChhh-hhhcccc
Confidence 45567899999999999999874 4577664
No 144
>PTZ00220 Activator of HSP-90 ATPase; Provisional
Probab=31.32 E-value=43 Score=28.31 Aligned_cols=21 Identities=5% Similarity=-0.021 Sum_probs=17.1
Q ss_pred eecCHHHHHHHhhccCCCcccc
Q 019858 236 VEASCEEIFELVMSMDGTRYEW 257 (335)
Q Consensus 236 V~aspe~IFe~lm~~d~~R~eW 257 (335)
.+|||+.||+.+.+++. ..+|
T Consensus 1 f~ap~e~Vw~A~Tdp~~-l~~w 21 (132)
T PTZ00220 1 FYVPPEVLYNAFLDAYT-LTRL 21 (132)
T ss_pred CCCCHHHHHHHHcCHHH-HHHH
Confidence 47999999999999874 4455
No 145
>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=30.99 E-value=29 Score=29.84 Aligned_cols=31 Identities=10% Similarity=0.261 Sum_probs=26.0
Q ss_pred cceEEeeeeecCHHHHHHHhhccCCCcccccc
Q 019858 228 RAMKAVGVVEASCEEIFELVMSMDGTRYEWDC 259 (335)
Q Consensus 228 ~~~kavgvV~aspe~IFe~lm~~d~~R~eWD~ 259 (335)
..+...-+|+|||+.||+++.+++. ..+|..
T Consensus 11 ~~i~~~~~i~Ap~e~Vw~altdp~~-~~~W~~ 41 (157)
T cd08899 11 ATLRFERLLPAPIEDVWAALTDPER-LARWFA 41 (157)
T ss_pred eEEEEEEecCCCHHHHHHHHcCHHH-HHhhcC
Confidence 4678889999999999999999873 557775
No 146
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=29.89 E-value=39 Score=28.16 Aligned_cols=27 Identities=15% Similarity=0.268 Sum_probs=21.7
Q ss_pred eEEeeeeecCHHHHHHHhhccCCCcccc
Q 019858 230 MKAVGVVEASCEEIFELVMSMDGTRYEW 257 (335)
Q Consensus 230 ~kavgvV~aspe~IFe~lm~~d~~R~eW 257 (335)
.++.-+|+|||+.||+.+.+++. -.+|
T Consensus 2 ~~~~~~i~ap~e~Vw~a~t~p~~-l~~W 28 (136)
T cd08901 2 AKTAMLIRRPVAEVFEAFVDPEI-TTKF 28 (136)
T ss_pred eeEEEEecCCHHHHHHHhcCHHH-hccc
Confidence 45667899999999999998874 4455
No 147
>PF03374 ANT: Phage antirepressor protein KilAC domain; InterPro: IPR005039 This entry is represented by Bacteriophage P1, Ant1 C-terminal domain, which represents the processed Ant2 chain. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Prophages P1 and P7 exist as unit copy DNA plasmids in the bacterial cell. Maintenance of the prophage state requires the continuous expression of two repressors: (i) C1 is a protein which negatively regulates the expression of lytic genes including the C1 inactivator gene coi, and (ii) C4 is an antisense RNA which specifically inhibits the synthesis of an anti-repressor Ant.; GO: 0003677 DNA binding
Probab=29.72 E-value=37 Score=27.60 Aligned_cols=53 Identities=19% Similarity=0.283 Sum_probs=31.6
Q ss_pred eeeeEEE-ee-ecccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCccee
Q 019858 7 YEGWMVR-YG-RRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTH 69 (335)
Q Consensus 7 ~EGWly~-~g-~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~ 69 (335)
-.||+|+ .+ .+..-.+|+.+-||+.+-.... .+-+...+-..++|++.|++-+
T Consensus 47 ~~g~l~~~~~~~~~p~q~~~~~G~~~~k~~~~~----------~~~g~~~~~~~~~iT~kG~~~i 101 (111)
T PF03374_consen 47 EKGWLYRRGKGRNLPYQKYIDAGYFEVKETTYT----------HSDGEGKTSSQTRITPKGLEWI 101 (111)
T ss_pred hCCceEECCCCCcccChhhhccceEEEeeeEee----------cCCCCcEEEEEEEEehhHHHHH
Confidence 4799999 33 3444444455668888744332 1113333447888998887643
No 148
>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT). This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....
Probab=29.54 E-value=2.8e+02 Score=21.75 Aligned_cols=20 Identities=25% Similarity=0.594 Sum_probs=17.2
Q ss_pred ecCHHHHHHHhhccCCCcccc
Q 019858 237 EASCEEIFELVMSMDGTRYEW 257 (335)
Q Consensus 237 ~aspe~IFe~lm~~d~~R~eW 257 (335)
+|||+.||+.+.+++. ..+|
T Consensus 1 ~ap~e~Vw~a~t~~~~-~~~W 20 (124)
T PF08327_consen 1 DAPPERVWEALTDPEG-LAQW 20 (124)
T ss_dssp SSSHHHHHHHHHSHHH-HHHH
T ss_pred CcCHHHHHHHHCCHhH-Hhhc
Confidence 6899999999998873 6688
No 149
>PF09551 Spore_II_R: Stage II sporulation protein R (spore_II_R); InterPro: IPR014202 This entry is designated stage II sporulation protein R. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species. SpoIIR is a signalling protein that links the activation of sigma E to the transcriptional activity of sigma F during sporulation [, ].
Probab=29.24 E-value=1.1e+02 Score=27.15 Aligned_cols=31 Identities=19% Similarity=0.006 Sum_probs=25.9
Q ss_pred eecCHHHHHHHHHHHHHHHhhhhhhhccCCC
Q 019858 92 AAFNIQEALIWKEKIELVIDQHQESQVSNGN 122 (335)
Q Consensus 92 aa~s~eea~~W~~a~~~Ai~q~~~~~~~~~~ 122 (335)
.+.|.+||.+|+.+-...|++.++..+++.+
T Consensus 39 ~~~~~~ea~~~i~~~~~~Ie~~A~~~l~~~G 69 (130)
T PF09551_consen 39 QAKSKEEAREVIRENLPEIEQIAEEVLAEEG 69 (130)
T ss_pred cCCCHHHHHHHHHHhHHHHHHHHHHHHHHhC
Confidence 4889999999999999999988777766544
No 150
>cd01231 PH_Lnk LNK-family Pleckstrin homology (PH) domain. LNK-family Pleckstrin homology (PH) domain. The Lnk family of proteins consists of Lnk, APS and SH2B. They are adaptor proteins consisting of a PH domain and an SH2 domain, which mediates signaling through growth factor receptors. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. The lnk family PH domain is likely involved in targeting of the adaptor proteins to the plasma membrane.
Probab=28.87 E-value=86 Score=27.00 Aligned_cols=38 Identities=16% Similarity=0.248 Sum_probs=30.1
Q ss_pred ceecCceeEEEEEEecCCCcceEEEeecCHHHHHHHHHHHHH
Q 019858 67 KTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIEL 108 (335)
Q Consensus 67 e~~hg~~~yvf~iyn~~~~~~~~~laa~s~eea~~W~~a~~~ 108 (335)
|.--....||+.++|. -.+-|.|.+.+++.+|+..|+.
T Consensus 69 EmPD~~nTFvLK~~~~----~eyI~Ea~d~~q~~SWla~Ir~ 106 (107)
T cd01231 69 EMPDNLYTFVLKVDDN----TDIIFEVGDEQQLNSWLAELRY 106 (107)
T ss_pred cccCcccEEEEEecCC----ceEEEEcCCHHHHHHHHHHHhc
Confidence 3333456889988774 4799999999999999998864
No 151
>KOG3523 consensus Putative guanine nucleotide exchange factor TIM [Signal transduction mechanisms]
Probab=28.75 E-value=88 Score=34.34 Aligned_cols=34 Identities=12% Similarity=0.379 Sum_probs=29.3
Q ss_pred eEEEEEE-ecCCCcceEEEeecCHHHHHHHHHHHH
Q 019858 74 VYVLSVY-NKKEKYHRITMAAFNIQEALIWKEKIE 107 (335)
Q Consensus 74 ~yvf~iy-n~~~~~~~~~laa~s~eea~~W~~a~~ 107 (335)
+|.+++. |.-+...++-|.|.|.-|.++||.||.
T Consensus 557 lF~ltLl~N~~~~~~e~lL~a~s~Sd~~RWi~Al~ 591 (695)
T KOG3523|consen 557 LFLLTLLSNHQGRQTELLLSAESQSDRQRWISALR 591 (695)
T ss_pred eEEEehhhccCCCceeeeecCCchHHHHHHHHhcC
Confidence 5666665 667888899999999999999999987
No 152
>PF08350 DUF1724: Domain of unknown function (DUF1724); InterPro: IPR013561 This domain of unknown function has so far only been found at the C terminus of archaean proteins, including several transcriptional regulators of the ArsR family (see IPR001845 from INTERPRO).
Probab=28.61 E-value=1.3e+02 Score=23.12 Aligned_cols=33 Identities=27% Similarity=0.396 Sum_probs=27.6
Q ss_pred eeEEEEEEecCCCcceEEEeecCHHHHHHHHHHH
Q 019858 73 MVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKI 106 (335)
Q Consensus 73 ~~yvf~iyn~~~~~~~~~laa~s~eea~~W~~a~ 106 (335)
.+..+++|++....++ +.=...-++|.+|=+-|
T Consensus 21 ~f~~l~Lf~~~G~yD~-~~lis~~~~Al~WG~eL 53 (64)
T PF08350_consen 21 KFMSLSLFNKDGRYDH-QDLISFDPSALKWGEEL 53 (64)
T ss_pred CeEEEEEEcCCCcCcC-eeEEECCHHHHHHHHHH
Confidence 6789999999877887 77778889999997665
No 153
>KOG2996 consensus Rho guanine nucleotide exchange factor VAV3 [Signal transduction mechanisms]
Probab=25.98 E-value=1.8e+02 Score=32.27 Aligned_cols=104 Identities=12% Similarity=0.197 Sum_probs=61.1
Q ss_pred ceeeEEEEecceeeecccCCCCC----CCccEEEEecCceEEeeCCcceecCce-eEEEEEEecCCCcceEEEeecCHHH
Q 019858 24 IHMRYFVLESRLLAYYKKKPQDN----QVPIKTLLIDGNCRVEDRGLKTHHGHM-VYVLSVYNKKEKYHRITMAAFNIQE 98 (335)
Q Consensus 24 ~~~RyFVL~g~~l~~YK~~P~~~----~~Pirs~vid~~~rVed~Gre~~hg~~-~yvf~iyn~~~~~~~~~laa~s~ee 98 (335)
...||.+|=.+.+-.-|++..+. ..-+-...+ ..--..++.-+.+|+.+ -|.|-|--. .+..+++|=|.+.+-
T Consensus 422 kqdRyiFLfDkvviVCKrkG~sy~lke~i~l~~y~m-~d~~~~~kd~kk~~~~~ws~~f~lI~t-qg~ngl~fy~Kte~~ 499 (865)
T KOG2996|consen 422 KQDRYIFLFDKVVIVCKRKGDSYELKEIIYLNAYKM-SDDPIDDKDNKKVSTITWSYGFYLIHT-QGRNGLEFYCKTEDL 499 (865)
T ss_pred ccceEEeEecceEEEeeccCcchhHHHHHHHHhhcc-ccCCCCchhhhhccceeeeeeEEEEEE-cCCcceEEEEecHHH
Confidence 34899999999998888886553 112222222 12222333333334332 234433333 333489999999999
Q ss_pred HHHHHHHHHHHHhhh-hhhhccCCCccccccc
Q 019858 99 ALIWKEKIELVIDQH-QESQVSNGNKYVSFEY 129 (335)
Q Consensus 99 a~~W~~a~~~Ai~q~-~~~~~~~~~~~~s~~~ 129 (335)
-.+||++|+-|+--. -|++.+++..|+-+-|
T Consensus 500 kkkWmeqfema~SNi~Pdya~an~H~fqmhtF 531 (865)
T KOG2996|consen 500 KKKWMEQFEMAKSNISPDYARANNHDFQMHTF 531 (865)
T ss_pred HHHHHHHHHHHHhcCCcccccccCcceEEEec
Confidence 999999999996543 2445555554443333
No 154
>cd08891 SRPBCC_CalC Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins. This subfamily includes Micromonospora echinospora CalC (MeCalC) and related proteins. These proteins belong to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM). Enediyne antibiotics are antitumor agents. Enediynes have an in vitro and in vivo role as DNA damaging agents; they consist of a DNA recognition unit (e.g., aryltetrasaccharide of CLM), an activating component (e.g., methyl trisulfide of CLM), which promotes cycloaromatization, and the enediyne warhead which cycloaromatizes to a reactive diradical species, resulting in oxidative strand cleavage of the targeted DNA sequence. MeCalC confers resistance to CLM by a self sacrificing mechanism: the transient enediyne diradical speci
Probab=25.41 E-value=71 Score=26.87 Aligned_cols=20 Identities=25% Similarity=0.293 Sum_probs=17.3
Q ss_pred eEEeeeeecCHHHHHHHhhc
Q 019858 230 MKAVGVVEASCEEIFELVMS 249 (335)
Q Consensus 230 ~kavgvV~aspe~IFe~lm~ 249 (335)
++..-+|+|||+.||+.+.+
T Consensus 2 ~~~~~~i~Ap~e~Vw~a~t~ 21 (149)
T cd08891 2 VRKSVTVPAPPERAFEVFTE 21 (149)
T ss_pred eEEEEEecCCHHHHHHHHHh
Confidence 45667899999999999987
No 155
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=25.20 E-value=2e+02 Score=24.61 Aligned_cols=54 Identities=9% Similarity=0.030 Sum_probs=37.4
Q ss_pred eEEeeeeecCHHHHHHHhhccCC-CcccccceeeeeeEEEEEeCcccEEEEEEee
Q 019858 230 MKAVGVVEASCEEIFELVMSMDG-TRYEWDCSFQYGSLVEEVDGHTAILYHRLQL 283 (335)
Q Consensus 230 ~kavgvV~aspe~IFe~lm~~d~-~R~eWD~~~~~~~vVE~iD~HtdIvy~~~~p 283 (335)
+...-.|+||++.+++.+.+.+. -...|-..+...+++|-=++.-.|-...+.+
T Consensus 3 ~~~e~~i~a~ad~vW~~~~~~~~~~~~~~~p~v~~~~~~eG~~~~GsvR~~~~~~ 57 (148)
T cd07816 3 LEHEVELKVPAEKLWKAFVLDSHLLPPKLPPVIKSVELLEGDGGPGSIKLITFGP 57 (148)
T ss_pred EEEEEEecCCHHHHHHHHhcChhhccccccccccEEEEEecCCCCceEEEEEEcC
Confidence 45567899999999999999873 3346766777777766433444566666553
No 156
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=25.11 E-value=31 Score=39.03 Aligned_cols=103 Identities=16% Similarity=0.213 Sum_probs=69.6
Q ss_pred ceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCC-CCccEEEEecCceEEeeCCcce-ec-CceeEEEEEEec
Q 019858 6 VYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDN-QVPIKTLLIDGNCRVEDRGLKT-HH-GHMVYVLSVYNK 82 (335)
Q Consensus 6 ~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~-~~Pirs~vid~~~rVed~Gre~-~h-g~~~yvf~iyn~ 82 (335)
.|.||+-.++..--+ .-+-.=|-.++-+-...|.-+-.++ +.|+=++=+..+.-+=.-|-++ +| ++.-=||-||--
T Consensus 813 rmnGwlRVyRdd~~~-stwl~~wammdl~~~~fy~~~gadple~p~f~idlnkeqw~Lrtgqe~~~~v~dimrvfnvliI 891 (1265)
T KOG0976|consen 813 RMNGWLRVYRDDAEA-STWLLGWAMMDLEGDDFYDMNGADPLEDPVFLIDLNKEQWALRTGQESLTHVPDIMRVFNVLII 891 (1265)
T ss_pred hcccceeeeccccch-hHHHHHHHHhhhcccchhhccCCccccCceEEeecchhHHHHHhccccccCCcchhhhheeeee
Confidence 489998777644322 2222334456666667777777776 6776554443332222223332 33 666778888888
Q ss_pred CCCcceEEEeecCHHHHHHHHHHHHHH
Q 019858 83 KEKYHRITMAAFNIQEALIWKEKIELV 109 (335)
Q Consensus 83 ~~~~~~~~laa~s~eea~~W~~a~~~A 109 (335)
++..+.+.|+|-++..|++|-..|+.|
T Consensus 892 K~~~r~l~I~ap~~~saerwA~CLq~a 918 (1265)
T KOG0976|consen 892 KDLERLLMIAAPSPKSAERWALCLQDA 918 (1265)
T ss_pred cchhhhheeecCCCccHHHHHHHHHHH
Confidence 999999999999999999999999999
No 157
>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=24.50 E-value=48 Score=27.56 Aligned_cols=26 Identities=15% Similarity=0.312 Sum_probs=20.9
Q ss_pred EEeeeeecCHHHHHHHhhccCCCcccc
Q 019858 231 KAVGVVEASCEEIFELVMSMDGTRYEW 257 (335)
Q Consensus 231 kavgvV~aspe~IFe~lm~~d~~R~eW 257 (335)
.-.-.++|||+.||+.+.+++. ..+|
T Consensus 3 ~~~r~i~ap~e~Vw~a~t~p~~-l~~W 28 (139)
T cd08894 3 VTTRVIDAPRDLVFAAWTDPEH-LAQW 28 (139)
T ss_pred EEEEEeCCCHHHHHHHhCCHHH-Hhhc
Confidence 4456799999999999999874 5566
No 158
>KOG0689 consensus Guanine nucleotide exchange factor for Rho and Rac GTPases [Signal transduction mechanisms]
Probab=24.37 E-value=56 Score=34.28 Aligned_cols=88 Identities=16% Similarity=0.240 Sum_probs=67.1
Q ss_pred eeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEecCCCc-ceEEEeecCHHHHHHHHH
Q 019858 26 MRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEKY-HRITMAAFNIQEALIWKE 104 (335)
Q Consensus 26 ~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~~~~~-~~~~laa~s~eea~~W~~ 104 (335)
+|=|..+.-+++ +|-.+. +.=....+-...+.|.+.|.+...+..---|.|.++..+. +.+.+-|.|.++--+|++
T Consensus 278 R~vflFe~~v~F-se~~~~--~~~~~~y~yk~~ik~~~lgle~n~~~s~~rF~i~~r~~~~~~~~vlqa~s~~~k~~W~~ 354 (448)
T KOG0689|consen 278 RRVFLFERLVVF-SKLRKP--ESGTETYVYKQHIKVNDLGLEENNDNSASRFEIWFRGRKKREAYVLQAGSKEIKYAWTR 354 (448)
T ss_pred hhhhhhhhhhhh-hhhhcC--CCCCcceeeecchhhhheeeeccCCCCCcchhhhhhcccccceeEEeeCCHHHHHHHHH
Confidence 556666666666 443331 1223356677888999999999999999999999887554 489999999999999999
Q ss_pred HHHHHHhhhhhh
Q 019858 105 KIELVIDQHQES 116 (335)
Q Consensus 105 a~~~Ai~q~~~~ 116 (335)
++-+.+.+|...
T Consensus 355 ~i~~~l~~Q~a~ 366 (448)
T KOG0689|consen 355 AISSLLWQQKAL 366 (448)
T ss_pred HHHHHHHHHHHH
Confidence 999888887333
No 159
>PF15404 PH_4: Pleckstrin homology domain
Probab=23.94 E-value=4.3e+02 Score=24.64 Aligned_cols=21 Identities=24% Similarity=0.292 Sum_probs=18.1
Q ss_pred eEEEeecCHHHHHHHHHHHHH
Q 019858 88 RITMAAFNIQEALIWKEKIEL 108 (335)
Q Consensus 88 ~~~laa~s~eea~~W~~a~~~ 108 (335)
-+.|-|+|.+|=..|+-||..
T Consensus 163 s~VF~ARSRqERD~WV~~I~~ 183 (185)
T PF15404_consen 163 SMVFMARSRQERDLWVLAINT 183 (185)
T ss_pred EEEEEeccHHHHHHHHHHHHh
Confidence 457899999999999999864
No 160
>cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=21.77 E-value=62 Score=26.70 Aligned_cols=26 Identities=19% Similarity=0.350 Sum_probs=21.1
Q ss_pred EEeeeeecCHHHHHHHhhccCCCcccc
Q 019858 231 KAVGVVEASCEEIFELVMSMDGTRYEW 257 (335)
Q Consensus 231 kavgvV~aspe~IFe~lm~~d~~R~eW 257 (335)
...-.++|||+.||+.+.+++. ..+|
T Consensus 3 ~~~~~~~ap~e~Vw~a~td~e~-~~~W 28 (133)
T cd08897 3 TVETTVDAPIEKVWEAWTTPEH-ITKW 28 (133)
T ss_pred EEEEEeCCCHHHHHHHhCCHHH-HhhC
Confidence 3456799999999999999874 5577
No 161
>PF02829 3H: 3H domain; InterPro: IPR004173 The 3H domain is named after its three highly conserved histidine residues. The 3H domain appears to be a small molecule-binding domain, based on its occurrence with other domains []. Several proteins carrying this domain are transcriptional regulators from the biotin repressor family. The transcription regulator TM1602 from Thermotoga maritima is a DNA-binding protein thought to belong to a family of de novo NAD synthesis pathway regulators. TM1602 has an N-terminal DNA-binding domain and a C-terminal 3H regulatory domain. The N-terminal domain appears to bind to the NAD promoter region and repress the de novo NAD biosynthesis operon, while the C-terminal 3H domain may bind to nicotinamide, nicotinic acid, or other substrate/products []. The 3H domain has a 2-layer alpha/beta sandwich fold.; GO: 0005488 binding; PDB: 1J5Y_A.
Probab=20.70 E-value=90 Score=26.12 Aligned_cols=44 Identities=20% Similarity=0.245 Sum_probs=30.0
Q ss_pred EEecCceEEeeCCcceecCceeEEEEEEecCCCcceEEEeecCHHHHHHHHHHHHHH
Q 019858 53 LLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELV 109 (335)
Q Consensus 53 ~vid~~~rVed~Gre~~hg~~~yvf~iyn~~~~~~~~~laa~s~eea~~W~~a~~~A 109 (335)
+|||.|++|.| +.+-.-+|- .=+..|..+|.+|+.++|++++..
T Consensus 16 ~IVd~Gg~V~D---------V~veHp~YG----~i~~~L~i~sr~Dv~~Fi~~l~~~ 59 (98)
T PF02829_consen 16 IIVDNGGRVLD---------VIVEHPVYG----EITGNLNISSRRDVDKFIEKLEKS 59 (98)
T ss_dssp HHHHTT-EEEE---------EEEEETTTE----EEEEEEEE-SHHHHHHHHHHHHH-
T ss_pred HHHHCCCEEEE---------EEEeCCCCc----EEEEEEecCCHHHHHHHHHHHhcc
Confidence 46788999988 333333332 345678899999999999999987
No 162
>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]
Probab=20.19 E-value=1.8e+02 Score=31.80 Aligned_cols=72 Identities=19% Similarity=0.278 Sum_probs=46.7
Q ss_pred cccceeeEEEEecceeeecccCCCCC---CCccEEEEecCceEEeeCCcceecCceeEEEEEEecCCCcceEEEeecCHH
Q 019858 21 RSFIHMRYFVLESRLLAYYKKKPQDN---QVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQ 97 (335)
Q Consensus 21 ~q~~~~RyFVL~g~~l~~YK~~P~~~---~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~~~~~~~~~laa~s~e 97 (335)
--|.++|+|+|...--..|-..|... +.|++. +|+||-. +.+.+||.+=+ +.+.+.= =.+
T Consensus 462 ~lf~rkr~lllTn~~rll~~~~~~~~lk~eip~~~-----~~~~e~~-----n~~~~~i~TP~------k~~~l~d-~~~ 524 (604)
T KOG0592|consen 462 GLFARKRMLLLTNGPRLLYVDPQNLVLKGEIPWSP-----DLRVELK-----NSSTFFIHTPN------KVYYLED-PEQ 524 (604)
T ss_pred hhhhceeEEEecCCCeEEEEecccceeccccccCc-----ccceeec-----cCcceEEECCc------cceeccC-ccc
Confidence 34788999999877666666655444 677776 6777643 33456666543 2333221 345
Q ss_pred HHHHHHHHHHHH
Q 019858 98 EALIWKEKIELV 109 (335)
Q Consensus 98 ea~~W~~a~~~A 109 (335)
.|..|-+|++.+
T Consensus 525 ~as~w~~ai~~~ 536 (604)
T KOG0592|consen 525 RASVWCKAIETV 536 (604)
T ss_pred chhHHHHhhhhh
Confidence 688999999988
No 163
>KOG3727 consensus Mitogen inducible gene product (contains ERM and PH domains) [Cell cycle control, cell division, chromosome partitioning]
Probab=20.09 E-value=1.4e+02 Score=32.66 Aligned_cols=69 Identities=16% Similarity=0.200 Sum_probs=48.0
Q ss_pred ecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEecCCCcceEEEeecCHHHHHHHHHHHHHH
Q 019858 38 YYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELV 109 (335)
Q Consensus 38 ~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~~~~~~~~~laa~s~eea~~W~~a~~~A 109 (335)
+||..-.++..|..++-+ -||+|.+. =..-+...-+|.|.-.-+...-+=+-|.|.+.=++||-|-+.|
T Consensus 389 ~~~s~~~s~~ap~~~i~l-~gcev~~d--V~~~~~k~~i~l~~~~~~~msEi~LRCd~E~QYA~WMAaCrLA 457 (664)
T KOG3727|consen 389 LYKSSEDSRGAPAISINL-KGCEVTPD--VNLSQQKYAIKLLVPTAEGMSEIWLRCDNEQQYARWMAACRLA 457 (664)
T ss_pred HHhhHhhhcCCCCCchhh-cCcccCCc--cccccccceEEEEeecCCccceeEEecCCHHHHHHHHHHhhHh
Confidence 333333333566666666 78888763 1112234456777777777888889999999999999999999
Done!