BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019860
         (334 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
           Resonance Spectroscopy; A New Structural Class Of Zinc-
           Finger
          Length = 68

 Score = 38.1 bits (87), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 23/42 (54%)

Query: 280 CPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMP 321
           CP+C +  +N S+       FCY CI +++ Q   CP+  +P
Sbjct: 8   CPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVP 49


>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
           Finger Protein 141
          Length = 70

 Score = 29.3 bits (64), Expect = 3.2,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 276 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPAT 323
           D   C +C   RA+  ++      FC  CI K+  +++ CP+  +  T
Sbjct: 14  DEEECCICMDGRAD--LILPCAHSFCQKCIDKWSDRHRNCPICRLQMT 59


>pdb|2CKL|A Chain A, Ring1b-Bmi1 E3 Catalytic Domain Structure
          Length = 108

 Score = 28.5 bits (62), Expect = 5.0,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 18/39 (46%)

Query: 279 ICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPV 317
           +C LC     + + +      FC  CI +Y+   K CP+
Sbjct: 17  MCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPI 55


>pdb|2H0D|A Chain A, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
           Ligase Complex
          Length = 97

 Score = 28.5 bits (62), Expect = 5.2,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 18/39 (46%)

Query: 279 ICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPV 317
           +C LC     + + +      FC  CI +Y+   K CP+
Sbjct: 13  MCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPI 51


>pdb|2DJB|A Chain A, Solution Structure Of The Ring Domain Of The Human
           Polycomb Group Ring Finger Protein 6
          Length = 72

 Score = 28.1 bits (61), Expect = 6.9,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 18/38 (47%)

Query: 279 ICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCP 316
           +C +C     + + +T     FC +CI ++     RCP
Sbjct: 17  LCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCP 54


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.138    0.428 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,961,970
Number of Sequences: 62578
Number of extensions: 327146
Number of successful extensions: 669
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 666
Number of HSP's gapped (non-prelim): 7
length of query: 334
length of database: 14,973,337
effective HSP length: 99
effective length of query: 235
effective length of database: 8,778,115
effective search space: 2062857025
effective search space used: 2062857025
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)