BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019860
(334 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M841|PEX12_ARATH Peroxisome biogenesis protein 12 OS=Arabidopsis thaliana GN=PEX12
PE=1 SV=2
Length = 393
Score = 511 bits (1317), Expect = e-144, Method: Compositional matrix adjust.
Identities = 249/333 (74%), Positives = 284/333 (85%)
Query: 1 MLILETHSLRNTDASFSESLYGLRRRSVRIRAKKDDTRLKSSDGIHHSGLEKRQRVLSVV 60
MLILE HSLR TD SF+ESLYGLRR+S R+R +KD R SS+ + HSGLEKRQR+LSVV
Sbjct: 60 MLILEGHSLRTTDGSFAESLYGLRRKSARLRLRKDSARKDSSEEVQHSGLEKRQRILSVV 119
Query: 61 FMVVLPYFKSKLHSVYNKEREARLQASLWGPTDERFDDVDYFGGGGNPLFSRGGTDAETS 120
F+VVLPYFKSKLH++YNKEREARL+ SLWG D+ FD+ D+F G + + + E S
Sbjct: 120 FLVVLPYFKSKLHAIYNKEREARLRESLWGAEDQGFDEADFFTGDDSIVSREPSGNEELS 179
Query: 121 VRTSLTKKIQKIIFACYPWLHASCEGLSFTYQLLYLLDATGFYSVGLHALGIHVCRATGQ 180
VR L KI+K I CYPW+HAS EGLSFTYQLLYLLDATGFYS+GL ALGI VCRATGQ
Sbjct: 180 VRVQLATKIKKFIAVCYPWIHASSEGLSFTYQLLYLLDATGFYSLGLQALGIQVCRATGQ 239
Query: 181 ELMDNSSRISKIRSRERERLLGPLWLKKLQGALLSCAYTMLDYAQTGLIAAVFFFKMMEW 240
ELMD SSRISKIR+ ERERL GP WLK +QGALLSC+Y +LDYAQTGLIAAVF FKMMEW
Sbjct: 240 ELMDTSSRISKIRNHERERLRGPPWLKTVQGALLSCSYAVLDYAQTGLIAAVFIFKMMEW 299
Query: 241 WYQSAEERMSAPTVYPPPPPPPPPKVAREGIPLPPDRTICPLCSQKRANPSVVTVSGFVF 300
WYQSAEER+SAPTVYPPPPPPP PK+A+EGIPLPPDR++C LC QKRANPSVVTVSGFVF
Sbjct: 300 WYQSAEERLSAPTVYPPPPPPPAPKMAKEGIPLPPDRSLCALCLQKRANPSVVTVSGFVF 359
Query: 301 CYACIFKYVSQYKRCPVTLMPATVEQIRRLFHD 333
CY+C+FKYVS+YKRCPVTL+PA+V+QIRRLF D
Sbjct: 360 CYSCVFKYVSKYKRCPVTLIPASVDQIRRLFQD 392
>sp|Q54N40|PEX12_DICDI Putative peroxisome assembly protein 12 OS=Dictyostelium discoideum
GN=pex12 PE=3 SV=1
Length = 459
Score = 135 bits (341), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 81/206 (39%), Positives = 123/206 (59%), Gaps = 5/206 (2%)
Query: 127 KKIQKIIFACYPWLHASCEGLSFTYQLLYLLDATGFYSVGLHALGIHVCRATGQELMDNS 186
KK++ I YP++ A E L F YQLLYL + T +Y+ H I + R +++ +
Sbjct: 257 KKLKTIFLKVYPFISAIYEALFFIYQLLYLYEYTNYYTPFFHFQNIQLKRLNHKDIESHR 316
Query: 187 SRISKIRSRERERLLGPLWLKKLQGALLSCAYTMLDYAQTGLIAAVFFFKMMEWWYQSAE 246
IS R R+R + L+S ++LDY++ L +VF FK +EWWY +E
Sbjct: 317 VVISN-RRRDRINFVRDWPGSSFFVRLVSILDSILDYSKYILPLSVFIFKSLEWWY--SE 373
Query: 247 ERMSAPTVYPPPPPPPPPKVAREGIPLPPDRTICPLCSQKRANPSVVTVSGFVFCYACIF 306
R+SAPT+ P P PP P K A G+ +P D+ +CPLC ++R NP++ SGFVFCY CIF
Sbjct: 374 NRISAPTL-PIPTPPTPSKRAPGGLEIPRDKRLCPLCLKERTNPTICG-SGFVFCYPCIF 431
Query: 307 KYVSQYKRCPVTLMPATVEQIRRLFH 332
YV+++ +CP+T +P EQ+R+++
Sbjct: 432 GYVNEHSKCPITFLPTNTEQLRKIYE 457
>sp|O88177|PEX12_RAT Peroxisome assembly protein 12 OS=Rattus norvegicus GN=Pex12 PE=2
SV=1
Length = 359
Score = 130 bits (326), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 100/334 (29%), Positives = 155/334 (46%), Gaps = 50/334 (14%)
Query: 2 LILETHSLRNTDASFSESLYGLRRRSVRIRAKKDDTRLKSSDGIHHSGLEKRQRVLSVVF 61
+L+ H L T ASFSE YGL+R I A + + +GL K S +F
Sbjct: 68 FLLQQHYLSRTSASFSEHFYGLKR----IVAGSSPQLQRPAS----AGLPKEHLWKSAMF 119
Query: 62 MVVLPYFKSKLHSVYNKEREARLQASLWGPTDERFDDVDYFGGGGNPLFSRGGTDAETSV 121
+V+LPY K KL + + RE + E S+
Sbjct: 120 LVLLPYLKVKLEKLASTLRE----------------------------------EDEYSI 145
Query: 122 R--TSLTKKIQKIIFACYPWLHASCEGLSFTYQLLYLLDATGFYSVGLHALGIHVCRATG 179
+S K+ ++ A YP++ + EG T QL Y+L +S L G+ + R T
Sbjct: 146 HPPSSHWKRFYRVFLAAYPFVTMTWEGWFLTQQLRYILGKAEHHSPLLKLAGVRLGRLTA 205
Query: 180 QELMDNSSRISKIRS-RERERLLGPLWLKKLQGALLSCAYTMLDYAQTGLIAAVFFFKMM 238
Q++ R+ + + +E R +G KK++ AL + TGL VFF + +
Sbjct: 206 QDIQAMEHRLVEASAMQEPVRSIG----KKIKSALKKAVGGVALSLSTGLSVGVFFLQFL 261
Query: 239 EWWYQSA-EERMSAPTVYPPPPPPPPPKVAREGIPLPPDRTICPLCSQKRANPSVVTVSG 297
+WWY S +E + + T P PPPP + LP +T+CPLC + R N +V+ SG
Sbjct: 262 DWWYSSENQETIKSLTALPTPPPPVHLDYNSDSPLLPKMKTVCPLCRKARVNDTVLATSG 321
Query: 298 FVFCYACIFKYVSQYKRCPVTLMPATVEQIRRLF 331
+VFCY C+F YV ++ CP+T P V+ + +L+
Sbjct: 322 YVFCYRCVFNYVRSHQACPITGYPTEVQHLIKLY 355
>sp|O00623|PEX12_HUMAN Peroxisome assembly protein 12 OS=Homo sapiens GN=PEX12 PE=1 SV=1
Length = 359
Score = 130 bits (326), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 100/338 (29%), Positives = 156/338 (46%), Gaps = 58/338 (17%)
Query: 2 LILETHSLRNTDASFSESLYGLRRRSVRIRAKKDDTRLKSSDGIHHSGLEKRQRVLSVVF 61
L+L+ H L T ASFSE+ YGL+R + + RL S+ GL K+Q S++F
Sbjct: 68 LLLQQHYLSRTSASFSENFYGLKR--IVMGDTHKSQRLASA------GLPKQQLWKSIMF 119
Query: 62 MVVLPYFKSKLHSVYNKEREARLQASLWGPTDERFDDVDYFGGGGNPLFSRGGTDAETSV 121
+V+LPY K KL + + RE + E S+
Sbjct: 120 LVLLPYLKVKLEKLVSSLRE----------------------------------EDEYSI 145
Query: 122 R--TSLTKKIQKIIFACYPWLHASCEGLSFTYQLLYLLDATGFYSVGLHALGIHVCRATG 179
+S K+ + A YP+++ + EG QL Y+L +S L G+ + R T
Sbjct: 146 HPPSSRWKRFYRAFLAAYPFVNMAWEGWFLVQQLRYILGKAQHHSPLLRLAGVQLGRLTV 205
Query: 180 QELMDNSSRISKIR-----SRERERLLGPLWLKKLQGALLSCAYTMLDYAQTGLIAAVFF 234
Q++ + +K +R + K + G LS + TGL VFF
Sbjct: 206 QDIQALEHKPAKASMMQQPARSVSEKINSALKKAVGGVALSLS--------TGLSVGVFF 257
Query: 235 FKMMEWWYQSA-EERMSAPTVYPPPPPPPPPKVAREGIPLPPDRTICPLCSQKRANPSVV 293
+ ++WWY S +E + + T P PPPP + LP +T+CPLC + R N +V+
Sbjct: 258 LQFLDWWYSSENQETIKSLTALPTPPPPVHLDYNSDSPLLPKMKTVCPLCRKTRVNDTVL 317
Query: 294 TVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQIRRLF 331
SG+VFCY C+F YV ++ CP+T P V+ + +L+
Sbjct: 318 ATSGYVFCYRCVFHYVRSHQACPITGYPTEVQHLIKLY 355
>sp|A4FUD4|PEX12_BOVIN Peroxisome assembly protein 12 OS=Bos taurus GN=PEX12 PE=2 SV=1
Length = 359
Score = 129 bits (325), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 98/333 (29%), Positives = 159/333 (47%), Gaps = 48/333 (14%)
Query: 2 LILETHSLRNTDASFSESLYGLRRRSVRIRAKKDDTRLKSSDGIHHSGLEKRQRVLSVVF 61
L+L+ H L T ASFSE+ YGL+R + D +L+ + ++GL K+Q + S++F
Sbjct: 68 LLLQQHYLSKTSASFSENFYGLKRIVM-----GDQHKLQR---LANAGLPKQQFMKSIMF 119
Query: 62 MVVLPYFKSKLHSVYNKEREARLQASLWGPTDERFDDVDYFGGGGNPLFSRGGTDAETSV 121
+V+LPY K KL + + RE + E S+
Sbjct: 120 LVLLPYLKVKLEKLVSSLRE----------------------------------EDEYSI 145
Query: 122 R--TSLTKKIQKIIFACYPWLHASCEGLSFTYQLLYLLDATGFYSVGLHALGIHVCRATG 179
+S K+ + A YP+++ + EG QL Y+L +S L G+ + R T
Sbjct: 146 HPPSSRWKRFYRAFLAAYPFVNMAWEGWFLVQQLRYILGKAQHHSPLLRLAGVRLGRLTV 205
Query: 180 QELMDNSSRISKIRSRERERLLGPLWLKKLQGALLSCAYTMLDYAQTGLIAAVFFFKMME 239
Q++ + ++ + L +K++ AL + TGL VFF + +E
Sbjct: 206 QDIQALEHKPAEASMMQ---LPAGSIGEKIKSALKKAVGGVALSLSTGLSVGVFFLQFLE 262
Query: 240 WWYQSA-EERMSAPTVYPPPPPPPPPKVAREGIPLPPDRTICPLCSQKRANPSVVTVSGF 298
WWY S +E + + T P PPPP + LP +T+CPLC + R N +V+ SG+
Sbjct: 263 WWYSSENQETIKSLTALPTPPPPVHLDYNSDSPLLPKMKTVCPLCRKNRVNDTVLATSGY 322
Query: 299 VFCYACIFKYVSQYKRCPVTLMPATVEQIRRLF 331
VFCY C+F YV ++ CP+T P V+ + +L+
Sbjct: 323 VFCYRCVFHYVRSHQACPITGYPTEVQHLIKLY 355
>sp|Q8VC48|PEX12_MOUSE Peroxisome assembly protein 12 OS=Mus musculus GN=Pex12 PE=2 SV=1
Length = 359
Score = 128 bits (321), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 99/334 (29%), Positives = 155/334 (46%), Gaps = 50/334 (14%)
Query: 2 LILETHSLRNTDASFSESLYGLRRRSVRIRAKKDDTRLKSSDGIHHSGLEKRQRVLSVVF 61
+L+ H L T ASFSE YGL+R I A + + +GL K S +F
Sbjct: 68 FLLQQHYLSRTSASFSEHFYGLKR----IVAGSSPHLQRPAS----AGLPKEHLWKSAMF 119
Query: 62 MVVLPYFKSKLHSVYNKEREARLQASLWGPTDERFDDVDYFGGGGNPLFSRGGTDAETSV 121
+V+LPY K KL + + RE + E S+
Sbjct: 120 LVLLPYLKVKLEKLASSLRE----------------------------------EDEYSI 145
Query: 122 R--TSLTKKIQKIIFACYPWLHASCEGLSFTYQLLYLLDATGFYSVGLHALGIHVCRATG 179
+S K+ + A YP+++ + EG T QL Y+L +S L G+ + R T
Sbjct: 146 HPPSSRWKRFYRAFLAAYPFVNMAWEGWFLTQQLRYILGKAEHHSPLLKLAGVRLARLTA 205
Query: 180 QELMDNSSRISKIRS-RERERLLGPLWLKKLQGALLSCAYTMLDYAQTGLIAAVFFFKMM 238
Q++ R+ + + +E R +G +K++ AL + TGL VFF + +
Sbjct: 206 QDMQAIKQRLVEASAMQEPVRSVG----EKIKSALKKAVGGVALSLSTGLSVGVFFLQFL 261
Query: 239 EWWYQSA-EERMSAPTVYPPPPPPPPPKVAREGIPLPPDRTICPLCSQKRANPSVVTVSG 297
+WWY S +E + + T P PPPP + LP +T+CPLC + R N +V+ SG
Sbjct: 262 DWWYSSENQEAIKSLTALPTPPPPVHLDYNSDSPLLPKMKTVCPLCRKTRVNDTVLATSG 321
Query: 298 FVFCYACIFKYVSQYKRCPVTLMPATVEQIRRLF 331
+VFCY C+F YV ++ CP+T P V+ + +L+
Sbjct: 322 YVFCYRCVFNYVRSHQACPITGYPTEVQHLIKLY 355
>sp|Q9ET67|PEX12_CRILO Peroxisome assembly protein 12 OS=Cricetulus longicaudatus GN=PEX12
PE=2 SV=1
Length = 359
Score = 127 bits (319), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 99/334 (29%), Positives = 156/334 (46%), Gaps = 50/334 (14%)
Query: 2 LILETHSLRNTDASFSESLYGLRRRSVRIRAKKDDTRLKSSDGIHHSGLEKRQRVLSVVF 61
+L+ H L T ASFSE YGL+R + + + R S+ GL K S +F
Sbjct: 68 FLLQQHYLSRTSASFSEHFYGLKR--IVAGSSQQPQRPASA------GLPKEHLWKSTMF 119
Query: 62 MVVLPYFKSKLHSVYNKEREARLQASLWGPTDERFDDVDYFGGGGNPLFSRGGTDAETSV 121
+V+LPY K KL + + RE + E S+
Sbjct: 120 LVLLPYLKVKLEKLASSLRE----------------------------------EDEYSI 145
Query: 122 R--TSLTKKIQKIIFACYPWLHASCEGLSFTYQLLYLLDATGFYSVGLHALGIHVCRATG 179
+S K+ + A YP+++ + EG T QL Y+L +S L G+ + R T
Sbjct: 146 HPPSSHWKRFYRAFLAAYPFVNMAWEGWFLTQQLRYILGKAEHHSPLLKLAGVRLGRLTA 205
Query: 180 QELMDNSSRISKIRS-RERERLLGPLWLKKLQGALLSCAYTMLDYAQTGLIAAVFFFKMM 238
Q++ R+S+ ++ R +G +K++ AL + TGL VFF + +
Sbjct: 206 QDIQAIEHRLSEASVMQDPVRSVG----EKIKLALKKAVGGIALSLSTGLSVGVFFLQFL 261
Query: 239 EWWYQSA-EERMSAPTVYPPPPPPPPPKVAREGIPLPPDRTICPLCSQKRANPSVVTVSG 297
+WWY S +E + + T P PPPP + LP +T+CPLC + R N +V+ SG
Sbjct: 262 DWWYSSENQETIKSLTALPTPPPPVHLDYNSDSPLLPKMKTVCPLCRKTRVNDTVLATSG 321
Query: 298 FVFCYACIFKYVSQYKRCPVTLMPATVEQIRRLF 331
+VFCY C+F YV ++ CP+T P V+ + +L+
Sbjct: 322 YVFCYRCVFNYVRSHQACPITGYPTEVQHLIKLY 355
>sp|Q19189|PEX12_CAEEL Putative peroxisome assembly protein 12 OS=Caenorhabditis elegans
GN=prx-12 PE=3 SV=1
Length = 359
Score = 115 bits (287), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 83/341 (24%), Positives = 150/341 (43%), Gaps = 66/341 (19%)
Query: 2 LILETHSLRNTDASFSESLYGLRRRSVRIRAKKDDTRLKSSDGIHHSGLEKRQRVLSVVF 61
LIL+ H LRN ASF+E+ Y ++R + T +DG R+R++S++
Sbjct: 73 LILQNHYLRNYGASFTENFYSMKRIA-------SGTGNPPNDG--------RERIMSLIT 117
Query: 62 MVVLPYFKSKLHSVYNKEREARLQASLWGPTDERFDDVDYFGGGGNPLFSRGGTDAETSV 121
+V PY ++KL+ +Y++ +E + W +
Sbjct: 118 LVGWPYVENKLNQLYDRLKEV-YECRSWSSIN---------------------------- 148
Query: 122 RTSLTKKIQKIIFACYPWLHASCEGLSFTYQLLYLLDATGFYSVGLHALGIHVCRATGQE 181
+ K QK+ +P++ + + + QL Y+L+ + +S L+ G+ + T ++
Sbjct: 149 --GMKAKCQKMFVIIWPYIKTALKAVKSALQLAYILNRSSIHSPWLYFSGVILKHLTPED 206
Query: 182 L---------MDNSSRISK--IRSRERERLLGPLWLKKLQGALLSCAYTMLDYAQTGLIA 230
L + +IS+ + R +W + L + Y
Sbjct: 207 LEAFNAVPLHLQTGYQISRGTLNEHIHLRFFNRIW--RFILGLPGIVSRLFAYG------ 258
Query: 231 AVFFFKMMEWWYQSAEERMSAPTVYPPPPPPPPPKVAREGIPLPPDRTICPLCSQKRANP 290
+FF + +++ Y + +++ + P PP + E L D CP+C +KR N
Sbjct: 259 -LFFVQFLDYMYNTDLAKLTKTGLDGAIPSPPHKMIISESEILSLDTNKCPICLKKRVND 317
Query: 291 SVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQIRRLF 331
+ + VSG+VFCY CI +YV+ Y +CPVT PA V+ + RLF
Sbjct: 318 TALFVSGYVFCYTCINQYVNTYNKCPVTGCPANVQHLIRLF 358
>sp|Q01961|PEX12_PICPA Peroxisome assembly protein 12 OS=Komagataella pastoris GN=PEX12
PE=3 SV=1
Length = 409
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 82/352 (23%), Positives = 138/352 (39%), Gaps = 74/352 (21%)
Query: 4 LETHSLRNTDASFSESLYGLRRRSVRIRAKKDDTRLKSSDGI---HHSGLEKRQRVLSVV 60
+E L + +++F + YGL++ VR RL+S L K Q +S+
Sbjct: 69 IEFRQLSHWNSTFIDKFYGLKK--VRNHQTISTERLQSQVPTLLEQRRRLSKTQIAVSLF 126
Query: 61 FMVVLPYFKSKLHSVYNKEREARLQASLWGPTDERFDDVDYFGGGGNPLFSRGGTDAETS 120
+V +PY + KL +Y+K P D + S
Sbjct: 127 EIVGVPYLRDKLDHLYDKLY---------------------------PKLMMNNLDPKES 159
Query: 121 VRTSLTKKIQKIIFACYPWLHASCEGLSFTYQLLYLLDATGFYSVGLHALGIHVCRATGQ 180
++T +Q YP L + + Q+LYL S+ + + R
Sbjct: 160 LKTF----VQYYFLKLYPILLSVLTTIQVLLQVLYLSGTFKSPSIIMWLFKMKYARLNSY 215
Query: 181 ELMDNSSRISKIRSRERERLLG-------PLWLKKLQGALLS-----CAYTMLDYAQTGL 228
+ + R++K ++ LG P+ L + L S +L T
Sbjct: 216 DYTLDEQRVNKFLNKTSPGKLGTGNNRIRPITLTESLYLLYSDLTRPLKKGLLITGGTLF 275
Query: 229 IAAVFFFKMMEWWYQSA-EERMSAP-TVYPPPPPPPPPKVAREGIPLPPDRTI------- 279
A++F K +EWW S +M+ P + PPP ++++ L DR I
Sbjct: 276 PASIFLLKFLEWWNSSDFATKMNKPRNPFSDSELPPPINLSKD---LLADRKIKKLLKKS 332
Query: 280 ------CPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYK-------RCPVT 318
CPLC ++ NP+V+ +G+VFCY CIFK+++ + RCP+T
Sbjct: 333 QSNDGTCPLCHKQITNPAVIE-TGYVFCYTCIFKHLTSSELDEETGGRCPIT 383
>sp|C8VCP8|PEX12_EMENI Peroxisome assembly protein 12 OS=Emericella nidulans (strain FGSC
A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=PEX12
PE=3 SV=1
Length = 489
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 93/385 (24%), Positives = 145/385 (37%), Gaps = 93/385 (24%)
Query: 2 LILETHSLRNTDASFSESLYGLRRRSVRIRAKKDDTRLK-SSDGIHHSGLEKRQRVL--S 58
L++E + LRN SF+E+ Y L+R V + + R + + G L+ R + +
Sbjct: 66 LVVERYYLRNFGGSFTENFYSLKRERVLLTKNGEIPRAQLGAPGPVRESLKLRNSDVWKN 125
Query: 59 VVFMVVLPYFKSKLHSVYNKEREARLQASLWGPTDERFDDVDYFGGGGNPLFSRGGTDAE 118
++ MV +PY K KL Y+ A QASL R++ D
Sbjct: 126 LLVMVGIPYLKRKLDEGYDI--HAAPQASLIMNGGPRYNPSD-------------DLPPH 170
Query: 119 TSVRTSLTKKIQKIIFACYPWLHASCEGLSFTYQLLYLLDATGFYSVGLHALGIHVCRAT 178
++R + + YP +A+ + L YL D T + S L +G + R +
Sbjct: 171 PTIRQRFMHAYKWFLRNVYPSFNAAYYFSILAFNLAYLFDNTKYSSPFLWLIGTRIRRLS 230
Query: 179 GQELMDNSSRISKI-------------RSRERERLLGPLWLKKLQGALLSCAYTMLDYAQ 225
+ I+KI RSR LLG L LL T L Y
Sbjct: 231 SAD----HQAIAKILEGKPQTPNSRSARSRPGSGLLGLFSPHNLYPQLL----TSLRYF- 281
Query: 226 TGLIAAVFFFKMMEWWYQSAEER-------------------MSAPTVYPPPPP------ 260
L A++F K +EWW+ S R M +P+ PP
Sbjct: 282 --LPASIFALKFLEWWHASDFSRQLARKATDTLDIPAPITKGMISPSERKSRPPTKQKED 339
Query: 261 PPPPKVARE---------------------GIPLPPDR----TICPLCSQKRANPSVVTV 295
P PK A + +PLPP + CP+C + NP+
Sbjct: 340 PESPKSALKTSSPHKRIQPPISASSYLPIFTVPLPPADSDAASSCPVCLNQLTNPTACQ- 398
Query: 296 SGFVFCYACIFKYVSQYKRCPVTLM 320
+G+V+CY CIF +++ + + M
Sbjct: 399 TGYVYCYVCIFHWLNGEHQRQIDFM 423
>sp|Q9VPT5|PEX12_DROME Putative peroxisome assembly protein 12 OS=Drosophila melanogaster
GN=pex12 PE=2 SV=1
Length = 297
Score = 68.9 bits (167), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 55/102 (53%), Gaps = 5/102 (4%)
Query: 233 FFFKMMEWWYQSAEERMSAPTVYPPPPPPPP--PKVAREGIPLPPDRTICPLCSQKRANP 290
FF + ++WWY + + R T+ P P PK ++ +P R CP+C P
Sbjct: 198 FFLQFVQWWYSNDQRRKVGGTLINPEAMPRKQLPKEVQQSLP---QRGECPVCLLSIQTP 254
Query: 291 SVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQIRRLFH 332
+ +VSG+VFC+ CI ++ ++ CPVT P +++ + R++
Sbjct: 255 TACSVSGYVFCWKCIVSHMKEHGTCPVTHYPISLDDLVRIYE 296
>sp|Q04370|PEX12_YEAST Peroxisome assembly protein 12 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PEX12 PE=1 SV=1
Length = 399
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 78/339 (23%), Positives = 126/339 (37%), Gaps = 76/339 (22%)
Query: 4 LETHSLRNTDASFSESLYGLRRRSVRIRAKKDDTRLKSSDGIHH--SGLEKRQRVLSVVF 61
+E + L+ +++F + YGL+ S R R T+ + G GL+ Q+ SV+F
Sbjct: 86 VEWYHLKTYNSTFIDRFYGLQLFSSRDR-NLALTQCLNPKGQSEWPQGLQLNQQQKSVIF 144
Query: 62 M--VVLPYFKSKLHSVYNKEREARLQASLWGPTDERFDDVDYFGGGGNPLFSRGGTDAET 119
+ ++LPY +KL DE + + N +FS T+ +
Sbjct: 145 LEKIILPYITAKL--------------------DEILEKISM-----NNIFSSDETENKW 179
Query: 120 SVRTSLTKKIQKIIFACYPWLHASCEGLSFTYQLLYLLDATGFYSVGLHALGIH--VCRA 177
R L YP++ + +LL+L TG S+ + I R
Sbjct: 180 PKRAFL---------RIYPFIKKLLALSNLLVKLLFLTKRTGSVSLLQYLFKIEYTTVRP 230
Query: 178 TGQEL--------MDNSSRISKIRSRERERLLGPLWLKKLQGALLSCAYTMLDYAQTGLI 229
EL MDN R + I S + L LS L + +
Sbjct: 231 LSSELSGLKETKGMDNRLRKTNISS-----------IFALMQGQLSIIPRFLTFMGSQFF 279
Query: 230 AA-VFFFKMMEWWY-QSAEERMSAPTVYPPPPPPPPPKVA-------REGIPLPPDRTIC 280
+F ++ +WW Q ++ P PP + +EG+ C
Sbjct: 280 PTFIFVLRVYQWWTTQDMTTKLQKRVNDLDEDIPRPPFSSHSDKTEDKEGV-----SEAC 334
Query: 281 PLCSQKRANPSVVTVSGFVFCYACIFKY-VSQYKRCPVT 318
P+C + NP V+ +G+V CY C Y V+ CPVT
Sbjct: 335 PVCEKTVQNPCVLE-TGYVACYPCAISYLVNNEGHCPVT 372
>sp|Q8TFH8|PEX12_SCHPO Peroxisome assembly protein 12 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=pex12 PE=3 SV=2
Length = 343
Score = 48.9 bits (115), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 57/110 (51%), Gaps = 18/110 (16%)
Query: 215 SCAYTMLDYAQTGLIAAVFFFKMMEWW----YQSAEERMS-APTVYPPPPPPPPPKVARE 269
S ++ D++ G + + ++++WW Y+S ++ A T PP P V+
Sbjct: 230 SLLTSIADHSMEGFLIII---QLIDWWQSNNYESHLKKGEVAFTELAPPKLPFEINVSTT 286
Query: 270 GIPLPPDRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYK-RCPVT 318
I C +C +K NP+V++ +GFVFCY CI ++ ++ +CPVT
Sbjct: 287 DI--------CKICGEKIKNPAVLS-TGFVFCYPCIQVWLQRHPFKCPVT 327
>sp|Q9SYU4|PEX10_ARATH Peroxisome biogenesis factor 10 OS=Arabidopsis thaliana GN=PEX10
PE=1 SV=1
Length = 381
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 280 CPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQIRRLFH 332
C LC R +P+ T G VFC++CI ++ ++ + CP+ P T + L+H
Sbjct: 327 CTLCLSTRQHPTA-TPCGHVFCWSCIMEWCNEKQECPLCRTPNTHSSLVCLYH 378
>sp|Q8BH75|RNF41_MOUSE E3 ubiquitin-protein ligase NRDP1 OS=Mus musculus GN=Rnf41 PE=1
SV=1
Length = 317
Score = 39.7 bits (91), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 279 ICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQIR---RLFHDM 334
ICP+CS P FC ACI ++ SQ + CPV TV +R R+ +M
Sbjct: 17 ICPICSGVLEEPVQAPHCEHAFCNACITQWFSQQQTCPVDRSVVTVAHLRPVPRIMRNM 75
>sp|Q5R7T5|RNF41_PONAB E3 ubiquitin-protein ligase NRDP1 OS=Pongo abelii GN=RNF41 PE=2
SV=1
Length = 317
Score = 39.7 bits (91), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 279 ICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQIR---RLFHDM 334
ICP+CS P FC ACI ++ SQ + CPV TV +R R+ +M
Sbjct: 17 ICPICSGVLEEPVQAPHCEHAFCNACITQWFSQQQTCPVDRSVVTVAHLRPVPRIMRNM 75
>sp|Q9H4P4|RNF41_HUMAN E3 ubiquitin-protein ligase NRDP1 OS=Homo sapiens GN=RNF41 PE=1
SV=2
Length = 317
Score = 39.7 bits (91), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 279 ICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQIR---RLFHDM 334
ICP+CS P FC ACI ++ SQ + CPV TV +R R+ +M
Sbjct: 17 ICPICSGVLEEPVQAPHCEHAFCNACITQWFSQQQTCPVDRSVVTVAHLRPVPRIMRNM 75
>sp|Q5FWL3|RNF41_XENLA E3 ubiquitin-protein ligase NRDP1 OS=Xenopus laevis GN=rnf41 PE=2
SV=1
Length = 317
Score = 39.7 bits (91), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 279 ICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQIR---RLFHDM 334
ICP+CS P FC ACI ++ SQ + CPV TV +R R+ +M
Sbjct: 17 ICPICSGVLEEPVQAPHCEHAFCNACITQWFSQQQTCPVDRSVVTVAHLRPVPRIMRNM 75
>sp|O22785|PR19B_ARATH Pre-mRNA-processing factor 19 homolog 2 OS=Arabidopsis thaliana
GN=PRP19B PE=1 SV=3
Length = 525
Score = 38.5 bits (88), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%)
Query: 280 CPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQI 327
C + + P V T SG +F I +++S Y +CPVT P T++ I
Sbjct: 3 CAISGEVPVEPVVSTKSGLLFERRLIERHISDYGKCPVTGEPLTIDDI 50
>sp|P84445|ICP0_EHV1V E3 ubiquitin-protein ligase ICP0 OS=Equine herpesvirus 1 (strain
V592) GN=ICP0 PE=3 SV=1
Length = 532
Score = 37.0 bits (84), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 280 CPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMP 321
CP+C + +N S+ FCY CI +++ Q CP+ +P
Sbjct: 8 CPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVP 49
>sp|P28990|ICP0_EHV1B E3 ubiquitin-protein ligase ICP0 OS=Equine herpesvirus 1 (strain
Ab4p) GN=63 PE=1 SV=1
Length = 532
Score = 37.0 bits (84), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 280 CPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMP 321
CP+C + +N S+ FCY CI +++ Q CP+ +P
Sbjct: 8 CPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVP 49
>sp|Q6ZMN7|PZRN4_HUMAN PDZ domain-containing RING finger protein 4 OS=Homo sapiens
GN=PDZRN4 PE=1 SV=3
Length = 1036
Score = 36.2 bits (82), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 280 CPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQIRRLF 331
C LC Q P + T G VFC +C+ + + +RCP+ P ++ R+
Sbjct: 18 CKLCGQVLEEP-LCTPCGHVFCASCLLPWAVRRRRCPLQCQPLAPGELYRVL 68
>sp|Q6CTZ8|RAD18_KLULA Postreplication repair E3 ubiquitin-protein ligase RAD18
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=RAD18
PE=3 SV=1
Length = 427
Score = 36.2 bits (82), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 291 SVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQIRRLF 331
SV+T G FC CI KY+ + +CP+ L T +++ F
Sbjct: 42 SVLTPCGHSFCSICIRKYLQKESKCPLCLSDLTESMLQKEF 82
>sp|Q54S31|PEX10_DICDI Peroxisome biogenesis factor 10 OS=Dictyostelium discoideum
GN=pex10 PE=3 SV=2
Length = 374
Score = 35.8 bits (81), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 280 CPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATV 324
C LC + R + + T+ G +FC+ CI ++ + ++CPV P ++
Sbjct: 322 CTLCLEVRTH-TTATICGHLFCWHCITEWCNNKEQCPVCRCPISI 365
>sp|Q9P3U8|YJ95_SCHPO Uncharacterized RING finger protein C548.05c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC548.05c PE=4 SV=1
Length = 468
Score = 35.8 bits (81), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 280 CPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPV 317
CP+C++ P T G +CY C+ ++ + K CP
Sbjct: 85 CPICTEALQRP-FTTHCGHTYCYECLLNWLKESKSCPT 121
>sp|Q7ZW16|RNF41_DANRE E3 ubiquitin-protein ligase NRDP1 OS=Danio rerio GN=rnf41 PE=2 SV=1
Length = 318
Score = 35.8 bits (81), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 279 ICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQIR---RLFHDM 334
+CP+CS P FC ACI ++ +Q + CPV T+ +R R+ +M
Sbjct: 17 LCPICSGVLEEPVRAPHCEHAFCNACITQWFAQQQICPVDRTVVTLAHLRPVPRIMRNM 75
>sp|Q75EN0|RAD18_ASHGO Postreplication repair E3 ubiquitin-protein ligase RAD18 OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=RAD18 PE=3 SV=1
Length = 443
Score = 35.4 bits (80), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 280 CPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQIRRLF 331
C +C P V+T G FC CI +Y+++ RCP+ L +++ F
Sbjct: 32 CHICKDMLQTP-VLTQCGHTFCSLCIREYLNKESRCPLCLAELRQNMLQKEF 82
>sp|Q6NZ21|RNFT1_DANRE RING finger and transmembrane domain-containing protein 1 OS=Danio
rerio GN=rnft1 PE=2 SV=2
Length = 419
Score = 35.4 bits (80), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
Query: 260 PPPPPKVAREGIPLPPDRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPV 317
P P ++ G ICP+C P V+ V +FC CI ++++Q + CP+
Sbjct: 346 PASPAQIREAG-------DICPICQADFKQPRVL-VCQHIFCEECIAQWLNQERTCPL 395
>sp|Q9BUZ4|TRAF4_HUMAN TNF receptor-associated factor 4 OS=Homo sapiens GN=TRAF4 PE=1 SV=1
Length = 470
Score = 35.4 bits (80), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 274 PPDRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQ-YKRCPVTLMPATVEQI 327
P R +CPLC + P V+ G FC C+ +++S+ +CP +P +I
Sbjct: 12 PKRRLLCPLCGKPMREPVQVSTCGHRFCDTCLQEFLSEGVFKCPEDQLPLDYAKI 66
>sp|O60683|PEX10_HUMAN Peroxisome biogenesis factor 10 OS=Homo sapiens GN=PEX10 PE=1 SV=1
Length = 326
Score = 35.4 bits (80), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 279 ICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPV 317
+C LC ++R +P+ T G +FC+ CI + S CP+
Sbjct: 272 LCTLCLEERRHPTA-TPCGHLFCWECITAWCSSKAECPL 309
>sp|Q61382|TRAF4_MOUSE TNF receptor-associated factor 4 OS=Mus musculus GN=Traf4 PE=1 SV=2
Length = 470
Score = 35.0 bits (79), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 274 PPDRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQ-YKRCPVTLMPATVEQI 327
P R +CPLC + P V+ G FC C+ +++S+ +CP +P +I
Sbjct: 12 PKRRLLCPLCGKPMREPVQVSTCGHRFCDTCLQEFLSEGVFKCPEDQLPLDYAKI 66
>sp|Q8HXW8|PEX10_MACFA Peroxisome biogenesis factor 10 OS=Macaca fascicularis GN=PEX10
PE=2 SV=1
Length = 326
Score = 35.0 bits (79), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 279 ICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPV 317
+C LC ++R +P+ T G +FC+ CI + S CP+
Sbjct: 272 LCTLCLEERRHPTA-TPCGHLFCWECITAWCSSKAECPL 309
>sp|Q8LE94|RING3_ARATH E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana
GN=At3g02290 PE=2 SV=1
Length = 231
Score = 35.0 bits (79), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 273 LPPDRTICPLCSQK--RANPSVVTVSGFVFCYACIFKYVSQYKRCPV 317
L D +CP C ++ NP +VT F +CI++++ + + CPV
Sbjct: 174 LSEDEDVCPTCLEEYTSENPKIVTKCSHHFHLSCIYEWMERSENCPV 220
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.137 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 128,611,279
Number of Sequences: 539616
Number of extensions: 5619056
Number of successful extensions: 53135
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 354
Number of HSP's successfully gapped in prelim test: 192
Number of HSP's that attempted gapping in prelim test: 43294
Number of HSP's gapped (non-prelim): 6544
length of query: 334
length of database: 191,569,459
effective HSP length: 118
effective length of query: 216
effective length of database: 127,894,771
effective search space: 27625270536
effective search space used: 27625270536
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (28.1 bits)