Query 019860
Match_columns 334
No_of_seqs 168 out of 696
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 08:11:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019860.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019860hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bay_A PRE-mRNA splicing facto 99.5 3.1E-14 1.1E-18 104.2 4.2 56 277-332 3-58 (61)
2 2kr4_A Ubiquitin conjugation f 99.4 1.2E-13 4E-18 107.4 6.2 55 275-330 12-66 (85)
3 3ng2_A RNF4, snurf, ring finge 99.4 4.3E-14 1.5E-18 105.0 3.3 57 275-332 8-71 (71)
4 1t1h_A Gspef-atpub14, armadill 99.4 1.8E-13 6.2E-18 103.8 5.8 54 275-329 6-60 (78)
5 2xeu_A Ring finger protein 4; 99.4 8.9E-14 3.1E-18 101.0 3.5 56 276-332 2-64 (64)
6 2kre_A Ubiquitin conjugation f 99.4 2.3E-13 7.8E-18 109.1 4.9 54 276-330 28-81 (100)
7 1wgm_A Ubiquitin conjugation f 99.4 6.3E-13 2.2E-17 106.2 6.3 54 276-330 21-75 (98)
8 2djb_A Polycomb group ring fin 99.4 5.4E-13 1.8E-17 99.9 5.5 56 275-330 13-68 (72)
9 2d8t_A Dactylidin, ring finger 99.3 4.2E-13 1.4E-17 100.2 3.5 54 276-330 14-67 (71)
10 2ecy_A TNF receptor-associated 99.3 7.8E-13 2.7E-17 97.2 4.5 52 275-327 13-65 (66)
11 2ysl_A Tripartite motif-contai 99.3 1.6E-12 5.5E-17 97.0 6.2 53 275-328 18-73 (73)
12 2ct2_A Tripartite motif protei 99.3 3E-12 1E-16 98.7 5.5 57 275-332 13-76 (88)
13 1g25_A CDK-activating kinase a 99.3 2.6E-12 9E-17 94.1 4.4 58 276-333 2-64 (65)
14 2ecw_A Tripartite motif-contai 99.3 7.7E-12 2.6E-16 95.4 7.1 55 276-331 18-78 (85)
15 2csy_A Zinc finger protein 183 99.3 5.8E-12 2E-16 96.2 6.0 47 276-323 14-60 (81)
16 3lrq_A E3 ubiquitin-protein li 99.2 3.7E-12 1.3E-16 101.6 4.5 56 276-331 21-77 (100)
17 2ecv_A Tripartite motif-contai 99.2 9.8E-12 3.4E-16 94.8 6.6 56 275-331 17-78 (85)
18 2yur_A Retinoblastoma-binding 99.2 4.9E-12 1.7E-16 95.3 4.8 49 275-323 13-63 (74)
19 3ztg_A E3 ubiquitin-protein li 99.2 7.5E-12 2.6E-16 97.7 5.6 54 275-328 11-67 (92)
20 2egp_A Tripartite motif-contai 99.2 2E-12 7E-17 97.8 2.1 55 275-330 10-71 (79)
21 2y43_A E3 ubiquitin-protein li 99.2 5.6E-12 1.9E-16 100.0 4.6 54 276-329 21-74 (99)
22 2yu4_A E3 SUMO-protein ligase 99.2 4.8E-12 1.6E-16 100.0 3.8 55 275-329 5-68 (94)
23 2f42_A STIP1 homology and U-bo 99.2 5E-12 1.7E-16 111.4 4.2 54 276-330 105-159 (179)
24 2ea6_A Ring finger protein 4; 99.2 6.8E-12 2.3E-16 92.2 4.3 49 275-324 13-68 (69)
25 1chc_A Equine herpes virus-1 r 99.2 1.3E-11 4.5E-16 90.8 5.9 48 276-323 4-51 (68)
26 2c2l_A CHIP, carboxy terminus 99.2 5.7E-12 1.9E-16 116.4 4.7 53 276-329 207-260 (281)
27 2ect_A Ring finger protein 126 99.2 1.4E-11 4.6E-16 93.3 4.7 53 276-329 14-69 (78)
28 4ap4_A E3 ubiquitin ligase RNF 99.2 9E-12 3.1E-16 102.7 3.8 57 276-333 6-69 (133)
29 2ckl_A Polycomb group ring fin 99.2 1.2E-11 4.1E-16 99.6 4.2 50 276-325 14-63 (108)
30 2ysj_A Tripartite motif-contai 99.2 2.1E-11 7.3E-16 88.5 5.1 43 275-318 18-63 (63)
31 4ayc_A E3 ubiquitin-protein li 99.2 1E-11 3.5E-16 104.5 3.7 47 277-324 53-99 (138)
32 1jm7_A BRCA1, breast cancer ty 99.2 1.9E-11 6.5E-16 98.5 5.1 53 277-330 21-76 (112)
33 1iym_A EL5; ring-H2 finger, ub 99.2 1.9E-11 6.4E-16 86.3 4.4 48 276-323 4-54 (55)
34 2ecn_A Ring finger protein 141 99.2 8.4E-12 2.9E-16 92.5 2.4 56 275-332 13-68 (70)
35 2ecm_A Ring finger and CHY zin 99.1 2.6E-11 8.8E-16 85.4 4.4 47 276-323 4-54 (55)
36 3hct_A TNF receptor-associated 99.1 1.6E-11 5.5E-16 100.6 3.7 54 275-329 16-70 (118)
37 2ecj_A Tripartite motif-contai 99.1 4.9E-11 1.7E-15 84.8 5.7 43 275-318 13-58 (58)
38 3fl2_A E3 ubiquitin-protein li 99.1 2.9E-11 9.9E-16 99.7 4.4 51 276-327 51-103 (124)
39 4ap4_A E3 ubiquitin ligase RNF 99.1 2.2E-11 7.5E-16 100.3 3.1 57 275-332 70-133 (133)
40 2vje_A E3 ubiquitin-protein li 99.1 3.6E-11 1.2E-15 88.3 3.8 54 276-332 7-63 (64)
41 2ep4_A Ring finger protein 24; 99.1 9.2E-11 3.1E-15 87.8 5.5 47 276-323 14-63 (74)
42 2kiz_A E3 ubiquitin-protein li 99.1 1.2E-10 4.1E-15 86.0 5.9 48 276-324 13-63 (69)
43 1x4j_A Ring finger protein 38; 99.1 3.8E-11 1.3E-15 90.3 2.8 48 276-324 22-72 (75)
44 2ckl_B Ubiquitin ligase protei 99.1 6E-11 2E-15 102.6 4.5 48 277-324 54-102 (165)
45 1rmd_A RAG1; V(D)J recombinati 99.1 6E-11 2E-15 96.6 4.1 54 276-330 22-76 (116)
46 1z6u_A NP95-like ring finger p 99.1 6.9E-11 2.3E-15 101.2 4.4 49 276-325 77-126 (150)
47 2ecl_A Ring-box protein 2; RNF 99.0 9.4E-11 3.2E-15 89.9 4.0 53 276-328 14-80 (81)
48 2vje_B MDM4 protein; proto-onc 99.0 7.8E-11 2.7E-15 86.3 3.3 54 276-332 6-62 (63)
49 1jm7_B BARD1, BRCA1-associated 99.0 5.8E-11 2E-15 97.1 2.1 52 276-329 21-72 (117)
50 2l0b_A E3 ubiquitin-protein li 99.0 8.9E-11 3E-15 91.9 3.1 47 276-323 39-88 (91)
51 3knv_A TNF receptor-associated 99.0 1E-10 3.5E-15 99.2 1.1 50 274-324 28-78 (141)
52 3l11_A E3 ubiquitin-protein li 98.9 1.4E-10 4.8E-15 94.3 1.4 48 276-324 14-62 (115)
53 2y1n_A E3 ubiquitin-protein li 98.9 3.7E-10 1.3E-14 110.3 4.2 53 277-330 332-385 (389)
54 1v87_A Deltex protein 2; ring- 98.9 4.5E-10 1.5E-14 90.9 3.4 46 277-323 25-93 (114)
55 1e4u_A Transcriptional repress 98.9 9.5E-10 3.3E-14 84.1 4.9 54 275-328 9-66 (78)
56 1bor_A Transcription factor PM 98.9 3.9E-10 1.3E-14 80.4 2.4 46 276-325 5-50 (56)
57 3htk_C E3 SUMO-protein ligase 98.9 3.8E-10 1.3E-14 104.5 2.9 54 276-329 180-237 (267)
58 3hcs_A TNF receptor-associated 98.9 5.5E-10 1.9E-14 96.9 3.7 55 274-329 15-70 (170)
59 4ic3_A E3 ubiquitin-protein li 98.8 1.6E-09 5.4E-14 81.6 2.9 49 277-332 24-73 (74)
60 3dpl_R Ring-box protein 1; ubi 98.8 3.3E-09 1.1E-13 85.7 4.1 51 276-326 36-103 (106)
61 2ecg_A Baculoviral IAP repeat- 98.8 4.7E-09 1.6E-13 79.1 4.5 49 277-332 25-74 (75)
62 2ea5_A Cell growth regulator w 98.8 1.4E-08 4.6E-13 75.5 6.4 51 276-333 14-65 (68)
63 2yho_A E3 ubiquitin-protein li 98.6 1.6E-08 5.4E-13 77.3 3.3 50 277-333 18-68 (79)
64 4a0k_B E3 ubiquitin-protein li 98.6 5.2E-09 1.8E-13 86.0 0.3 50 277-326 48-114 (117)
65 1wim_A KIAA0161 protein; ring 98.4 3.9E-08 1.3E-12 77.1 1.0 55 276-330 4-72 (94)
66 3t6p_A Baculoviral IAP repeat- 98.4 6.8E-08 2.3E-12 93.2 1.9 50 276-332 294-344 (345)
67 3vk6_A E3 ubiquitin-protein li 98.3 2.4E-07 8.3E-12 73.4 3.4 44 279-323 3-48 (101)
68 2d8s_A Cellular modulator of i 98.2 6.9E-07 2.4E-11 68.4 4.2 51 275-326 13-72 (80)
69 2ct0_A Non-SMC element 1 homol 98.2 2.4E-06 8.1E-11 64.5 5.3 50 274-323 12-63 (74)
70 3m62_A Ubiquitin conjugation f 97.6 3.3E-05 1.1E-09 82.7 4.0 54 275-329 889-943 (968)
71 3k1l_B Fancl; UBC, ring, RWD, 97.1 0.00019 6.6E-09 68.7 3.1 48 276-323 307-372 (381)
72 1vyx_A ORF K3, K3RING; zinc-bi 96.7 0.0013 4.6E-08 47.2 3.6 48 276-324 5-59 (60)
73 3nw0_A Non-structural maintena 96.6 0.0022 7.5E-08 58.5 5.4 49 277-325 180-230 (238)
74 2cs3_A Protein C14ORF4, MY039 94.2 0.12 4E-06 39.2 6.3 35 277-311 15-52 (93)
75 3i2d_A E3 SUMO-protein ligase 92.8 0.081 2.8E-06 51.1 4.3 52 277-328 249-304 (371)
76 4fo9_A E3 SUMO-protein ligase 92.1 0.11 3.9E-06 49.9 4.3 52 277-328 215-270 (360)
77 2jun_A Midline-1; B-BOX, TRIM, 91.3 0.13 4.3E-06 39.9 3.1 31 277-307 3-35 (101)
78 2fiy_A Protein FDHE homolog; F 90.8 0.029 1E-06 53.0 -1.3 46 276-321 181-231 (309)
79 2ko5_A Ring finger protein Z; 90.2 0.12 4.1E-06 40.3 2.0 45 277-323 28-72 (99)
80 3vth_A Hydrogenase maturation 88.3 0.12 4.1E-06 54.5 0.9 52 272-323 106-194 (761)
81 1weo_A Cellulose synthase, cat 87.2 0.76 2.6E-05 35.4 4.6 47 277-323 16-69 (93)
82 2jne_A Hypothetical protein YF 86.4 0.04 1.4E-06 43.1 -3.0 41 277-323 32-72 (101)
83 1m3v_A FLIN4, fusion of the LI 86.3 0.48 1.6E-05 38.0 3.3 52 277-328 32-85 (122)
84 4g9i_A Hydrogenase maturation 82.7 0.38 1.3E-05 50.8 1.3 52 272-323 101-189 (772)
85 3ttc_A HYPF, transcriptional r 81.8 0.43 1.5E-05 49.5 1.4 50 273-322 13-99 (657)
86 2jrp_A Putative cytoplasmic pr 81.6 0.15 5.2E-06 38.7 -1.6 41 278-324 3-43 (81)
87 1wd2_A Ariadne-1 protein homol 80.9 0.48 1.7E-05 33.7 1.0 36 276-311 5-47 (60)
88 3pwf_A Rubrerythrin; non heme 80.6 0.51 1.7E-05 40.6 1.2 10 313-322 154-163 (170)
89 2gmg_A Hypothetical protein PF 79.1 0.42 1.4E-05 38.0 0.2 30 287-321 64-93 (105)
90 2jmo_A Parkin; IBR, E3 ligase, 79.0 0.3 1E-05 36.7 -0.7 37 277-315 25-73 (80)
91 1wff_A Riken cDNA 2810002D23 p 78.2 3 0.0001 31.8 4.7 50 276-329 24-75 (85)
92 2ct7_A Ring finger protein 31; 78.2 0.56 1.9E-05 35.5 0.7 34 279-312 27-65 (86)
93 2xjy_A Rhombotin-2; oncoprotei 77.0 1.7 5.7E-05 34.8 3.3 49 276-325 28-79 (131)
94 2xqn_T Testin, TESS; metal-bin 73.0 3.5 0.00012 32.6 4.2 48 276-325 29-76 (126)
95 1x64_A Alpha-actinin-2 associa 72.7 10 0.00035 28.0 6.5 41 276-325 24-64 (89)
96 3zyq_A Hepatocyte growth facto 72.5 2.1 7.3E-05 38.1 3.0 33 276-308 163-198 (226)
97 1lko_A Rubrerythrin all-iron(I 72.4 0.9 3.1E-05 39.6 0.5 10 313-322 172-181 (191)
98 1rut_X Flinc4, fusion protein 72.1 1.2 4.2E-05 38.2 1.3 50 276-326 31-83 (188)
99 2cup_A Skeletal muscle LIM-pro 71.6 4.2 0.00014 30.8 4.2 53 276-330 32-85 (101)
100 1x4w_A Hypothetical protein FL 71.2 2.1 7.1E-05 31.2 2.1 46 276-325 14-63 (67)
101 1yuz_A Nigerythrin; rubrythrin 70.2 1.4 4.6E-05 38.9 1.1 10 313-322 187-196 (202)
102 3mjh_B Early endosome antigen 70.0 0.79 2.7E-05 29.0 -0.3 17 277-293 5-21 (34)
103 1joc_A EEA1, early endosomal a 69.9 1.9 6.5E-05 35.0 1.9 32 277-308 69-103 (125)
104 1z60_A TFIIH basal transcripti 69.5 2.2 7.5E-05 30.3 1.9 41 278-319 16-59 (59)
105 1wfk_A Zinc finger, FYVE domai 69.4 2.5 8.6E-05 32.2 2.4 34 275-308 7-43 (88)
106 1dvp_A HRS, hepatocyte growth 68.8 3.7 0.00013 36.2 3.7 32 277-308 161-195 (220)
107 2rgt_A Fusion of LIM/homeobox 68.5 6.2 0.00021 33.0 4.9 49 276-327 32-80 (169)
108 2yw8_A RUN and FYVE domain-con 65.9 3 0.0001 31.2 2.1 33 276-308 18-53 (82)
109 6rxn_A Rubredoxin; electron tr 65.7 1.5 5.1E-05 29.6 0.3 10 312-321 30-39 (46)
110 1x4u_A Zinc finger, FYVE domai 65.3 3.1 0.00011 31.1 2.2 32 277-308 14-48 (84)
111 1wfp_A Zinc finger (AN1-like) 65.1 7.5 0.00026 28.8 4.1 48 276-327 24-72 (74)
112 2jtn_A LIM domain-binding prot 64.9 6.4 0.00022 33.3 4.4 48 276-326 86-133 (182)
113 1z2q_A LM5-1; membrane protein 64.7 3.3 0.00011 31.1 2.2 33 276-308 20-55 (84)
114 1y02_A CARP2, FYVE-ring finger 64.4 3.2 0.00011 33.6 2.2 42 277-318 19-63 (120)
115 3t7l_A Zinc finger FYVE domain 63.3 3.2 0.00011 31.6 1.9 33 277-309 20-55 (90)
116 1b8t_A Protein (CRP1); LIM dom 62.6 7.2 0.00025 33.3 4.3 36 276-311 33-68 (192)
117 1wfh_A Zinc finger (AN1-like) 62.3 6.7 0.00023 28.2 3.3 48 276-327 14-62 (64)
118 1vfy_A Phosphatidylinositol-3- 61.8 4.2 0.00014 29.6 2.2 30 278-307 12-44 (73)
119 1wfl_A Zinc finger protein 216 59.2 10 0.00035 28.0 3.9 43 276-322 24-67 (74)
120 1s24_A Rubredoxin 2; electron 58.1 1.9 6.5E-05 33.0 -0.2 13 309-321 65-77 (87)
121 1wg2_A Zinc finger (AN1-like) 57.7 8.5 0.00029 27.7 3.2 48 276-327 14-62 (64)
122 2kn9_A Rubredoxin; metalloprot 56.0 2.1 7.1E-05 32.4 -0.3 11 311-321 59-69 (81)
123 1x61_A Thyroid receptor intera 55.8 14 0.00046 26.0 4.1 36 276-311 32-67 (72)
124 3mpx_A FYVE, rhogef and PH dom 55.3 2.5 8.5E-05 40.7 0.0 33 277-309 375-410 (434)
125 2v3b_B Rubredoxin 2, rubredoxi 53.1 2.9 9.9E-05 29.1 0.0 11 311-321 35-45 (55)
126 2pk7_A Uncharacterized protein 52.1 4.8 0.00016 29.3 1.1 13 276-288 7-19 (69)
127 2co8_A NEDD9 interacting prote 50.9 23 0.00077 25.8 4.8 41 277-325 15-55 (82)
128 1l8d_A DNA double-strand break 50.5 4.1 0.00014 31.8 0.6 13 312-324 47-59 (112)
129 1pft_A TFIIB, PFTFIIBN; N-term 49.3 10 0.00035 25.3 2.3 24 277-300 5-34 (50)
130 1nui_A DNA primase/helicase; z 49.2 4.9 0.00017 36.0 0.9 26 277-305 14-40 (255)
131 1iml_A CRIP, cysteine rich int 49.2 19 0.00064 25.6 4.0 45 276-322 26-71 (76)
132 2uzg_A Ubiquitin carboxyl-term 49.1 14 0.00047 28.5 3.4 35 277-311 25-65 (97)
133 1dx8_A Rubredoxin; electron tr 48.5 3.3 0.00011 30.3 -0.2 11 311-321 39-49 (70)
134 1x4v_A Hypothetical protein LO 46.5 33 0.0011 24.4 4.8 45 276-323 11-57 (63)
135 4rxn_A Rubredoxin; electron tr 46.3 3.8 0.00013 28.5 -0.2 12 310-321 34-45 (54)
136 2cur_A Skeletal muscle LIM-pro 45.6 18 0.00062 25.1 3.4 34 276-309 30-63 (69)
137 2hf1_A Tetraacyldisaccharide-1 45.5 5.7 0.00019 28.9 0.6 13 277-289 8-20 (68)
138 3v2d_5 50S ribosomal protein L 44.9 6.2 0.00021 28.0 0.7 22 277-298 30-51 (60)
139 2zjr_Z 50S ribosomal protein L 44.8 7.7 0.00026 27.5 1.2 22 277-298 30-51 (60)
140 2d8x_A Protein pinch; LIM doma 44.6 15 0.0005 25.7 2.7 34 276-309 30-63 (70)
141 1yk4_A Rubredoxin, RD; electro 43.9 4 0.00014 28.1 -0.4 11 311-321 34-44 (52)
142 1b8t_A Protein (CRP1); LIM dom 43.5 20 0.0007 30.4 4.0 45 276-322 141-185 (192)
143 2g45_A Ubiquitin carboxyl-term 42.9 15 0.00052 29.9 2.9 36 276-312 33-78 (129)
144 2lcq_A Putative toxin VAPC6; P 42.8 5.2 0.00018 33.5 0.0 10 313-322 149-158 (165)
145 1x4l_A Skeletal muscle LIM-pro 42.6 16 0.00054 25.7 2.6 31 276-306 34-64 (72)
146 2jr6_A UPF0434 protein NMA0874 42.6 8.6 0.00029 27.9 1.2 14 276-289 7-20 (68)
147 2cor_A Pinch protein; LIM doma 42.2 24 0.00083 25.4 3.7 30 276-306 40-69 (79)
148 2dar_A PDZ and LIM domain prot 42.0 21 0.00073 26.3 3.4 38 277-323 25-62 (90)
149 1e8j_A Rubredoxin; iron-sulfur 42.0 16 0.00055 25.0 2.4 9 313-321 37-45 (52)
150 2gvi_A Conserved hypothetical 41.2 8.5 0.00029 33.7 1.2 29 277-306 172-201 (204)
151 2ee8_A Protein ODD-skipped-rel 40.7 56 0.0019 23.7 5.7 48 276-323 16-84 (106)
152 1x62_A C-terminal LIM domain p 40.6 21 0.00073 25.6 3.2 38 277-323 15-52 (79)
153 2pv0_B DNA (cytosine-5)-methyl 40.6 19 0.00064 34.8 3.5 43 277-320 93-147 (386)
154 1wig_A KIAA1808 protein; LIM d 38.9 19 0.00063 25.6 2.5 37 276-312 30-67 (73)
155 3c5k_A HD6, histone deacetylas 38.8 13 0.00044 29.4 1.8 34 277-311 24-61 (109)
156 3pwf_A Rubrerythrin; non heme 38.8 7.9 0.00027 33.0 0.6 24 276-299 137-162 (170)
157 2d8z_A Four and A half LIM dom 38.5 26 0.0009 24.2 3.3 34 276-309 30-63 (70)
158 1nyp_A Pinch protein; LIM doma 38.4 21 0.00071 24.5 2.7 31 277-307 31-61 (66)
159 1zfo_A LAsp-1; LIM domain, zin 38.1 20 0.00067 21.5 2.1 26 278-304 4-30 (31)
160 2lv2_A Insulinoma-associated p 37.9 14 0.00049 27.3 1.9 36 276-323 27-67 (85)
161 1x64_A Alpha-actinin-2 associa 37.9 24 0.00083 25.9 3.2 34 277-310 51-84 (89)
162 1wyh_A SLIM 2, skeletal muscle 37.0 18 0.00062 25.2 2.2 34 276-309 32-65 (72)
163 2d8y_A Eplin protein; LIM doma 36.6 29 0.001 25.5 3.5 34 277-310 42-75 (91)
164 2iyb_E Testin, TESS, TES; LIM 36.4 16 0.00054 25.2 1.8 31 276-306 31-62 (65)
165 2lri_C Autoimmune regulator; Z 36.0 49 0.0017 23.5 4.4 47 274-321 9-59 (66)
166 2jny_A Uncharacterized BCR; st 35.9 17 0.00057 26.3 1.8 14 276-289 9-22 (67)
167 2kpi_A Uncharacterized protein 35.8 12 0.00042 25.9 1.1 13 276-288 9-21 (56)
168 1dl6_A Transcription factor II 35.6 14 0.00048 25.7 1.4 9 277-285 11-19 (58)
169 1wfe_A Riken cDNA 2310008M20 p 35.6 24 0.00081 26.7 2.7 39 276-317 24-64 (86)
170 2vrw_B P95VAV, VAV1, proto-onc 35.2 16 0.00054 34.7 2.1 40 276-319 356-399 (406)
171 1x62_A C-terminal LIM domain p 35.1 17 0.00059 26.1 1.9 36 276-311 40-75 (79)
172 3k1f_M Transcription initiatio 34.4 17 0.00059 31.4 2.0 30 276-305 20-57 (197)
173 2egq_A FHL1 protein; LIM domai 34.0 24 0.00081 25.0 2.4 29 277-305 46-74 (77)
174 2js4_A UPF0434 protein BB2007; 33.5 12 0.00042 27.2 0.8 13 276-288 7-19 (70)
175 1x4k_A Skeletal muscle LIM-pro 33.0 29 0.001 24.0 2.8 32 277-308 33-64 (72)
176 2dar_A PDZ and LIM domain prot 31.9 54 0.0018 24.0 4.2 34 276-309 50-83 (90)
177 3vhs_A ATPase wrnip1; zinc fin 31.8 8.9 0.00031 22.5 -0.2 10 278-287 7-16 (29)
178 4ayb_P DNA-directed RNA polyme 31.1 40 0.0014 22.7 2.9 28 278-322 4-33 (48)
179 1x63_A Skeletal muscle LIM-pro 31.1 38 0.0013 24.1 3.2 33 277-309 43-75 (82)
180 1wys_A Riken cDNA 2310008M20 p 30.8 40 0.0014 24.8 3.2 45 273-320 10-56 (75)
181 4cpa_I Metallocarboxypeptidase 30.7 12 0.00042 23.5 0.3 22 281-304 6-27 (38)
182 1x68_A FHL5 protein; four-and- 30.0 16 0.00054 26.0 0.9 28 278-305 36-63 (76)
183 1j2o_A FLIN2, fusion of rhombo 29.9 82 0.0028 24.1 5.2 40 276-315 29-70 (114)
184 2cuq_A Four and A half LIM dom 29.8 44 0.0015 23.7 3.4 34 276-309 40-73 (80)
185 2lce_A B-cell lymphoma 6 prote 29.5 24 0.00081 24.2 1.8 40 276-323 16-56 (74)
186 1x3h_A Leupaxin; paxillin fami 29.0 43 0.0015 23.7 3.2 33 276-308 40-72 (80)
187 3ihp_A Ubiquitin carboxyl-term 29.0 29 0.00099 36.8 3.0 37 276-313 214-260 (854)
188 2cu8_A Cysteine-rich protein 2 28.6 30 0.001 24.4 2.2 31 277-307 36-67 (76)
189 1vq8_Z 50S ribosomal protein L 28.2 11 0.00037 28.4 -0.3 15 277-291 27-42 (83)
190 1g47_A Pinch protein; LIM doma 27.8 29 0.00098 24.5 2.0 31 277-307 39-69 (77)
191 2zet_C Melanophilin; complex, 27.7 22 0.00077 29.7 1.5 30 277-306 68-101 (153)
192 2epr_A POZ-, at HOOK-, and zin 27.1 26 0.0009 21.8 1.5 18 276-293 11-28 (48)
193 3j20_Y 30S ribosomal protein S 26.8 24 0.00084 23.8 1.3 25 276-300 18-47 (50)
194 2a20_A Regulating synaptic mem 26.6 34 0.0012 24.2 2.0 16 275-290 7-23 (62)
195 1zbd_B Rabphilin-3A; G protein 26.5 24 0.00082 28.8 1.5 31 277-307 55-89 (134)
196 2i50_A Ubiquitin carboxyl-term 25.9 18 0.00062 29.2 0.6 34 278-311 29-80 (126)
197 2jvx_A NF-kappa-B essential mo 25.6 15 0.00052 22.0 0.1 16 277-292 3-18 (28)
198 1bbo_A Human enhancer-binding 25.4 38 0.0013 21.5 2.1 34 278-323 2-40 (57)
199 2kdx_A HYPA, hydrogenase/ureas 25.3 25 0.00084 27.8 1.3 10 312-321 89-99 (119)
200 2k5c_A Uncharacterized protein 25.0 16 0.00055 27.5 0.1 11 278-288 9-19 (95)
201 3a1b_A DNA (cytosine-5)-methyl 24.7 43 0.0015 28.2 2.8 43 277-320 79-133 (159)
202 2l4z_A DNA endonuclease RBBP8, 24.3 53 0.0018 25.9 3.2 39 277-323 61-99 (123)
203 2l3k_A Rhombotin-2, linker, LI 24.3 70 0.0024 24.9 3.9 36 276-311 35-71 (123)
204 2ida_A Hypothetical protein; z 24.3 27 0.00094 27.2 1.3 28 277-304 18-48 (102)
205 3k7a_M Transcription initiatio 24.2 34 0.0012 32.0 2.3 30 277-306 21-58 (345)
206 3f6q_B LIM and senescent cell 24.1 44 0.0015 22.9 2.4 11 278-288 12-22 (72)
207 2rgt_A Fusion of LIM/homeobox 23.5 59 0.002 26.8 3.5 37 276-312 92-130 (169)
208 2eps_A POZ-, at HOOK-, and zin 23.4 39 0.0013 21.7 1.9 35 277-323 12-52 (54)
209 2adr_A ADR1; transcription reg 23.3 37 0.0013 21.9 1.8 34 278-323 3-41 (60)
210 2epq_A POZ-, at HOOK-, and zin 23.2 28 0.00095 21.2 1.0 17 277-293 10-26 (45)
211 3avr_A Lysine-specific demethy 23.2 11 0.00039 37.8 -1.3 51 276-332 457-518 (531)
212 1wil_A KIAA1045 protein; ring 23.0 1.1E+02 0.0036 23.2 4.3 33 276-308 14-47 (89)
213 2cot_A Zinc finger protein 435 22.8 43 0.0015 23.0 2.1 36 276-323 17-57 (77)
214 3d00_A Tungsten formylmethanof 22.5 21 0.0007 31.0 0.3 25 276-306 162-186 (191)
215 1x6e_A Zinc finger protein 24; 22.1 21 0.00073 24.3 0.3 40 276-323 13-53 (72)
216 1a7i_A QCRP2 (LIM1); LIM domai 21.7 28 0.00095 25.0 0.9 42 277-320 34-75 (81)
217 2l4z_A DNA endonuclease RBBP8, 21.5 37 0.0013 26.9 1.7 30 277-307 88-120 (123)
218 2dmd_A Zinc finger protein 64, 21.5 66 0.0023 22.7 3.0 47 276-322 7-74 (96)
219 2gqj_A Zinc finger protein KIA 21.1 60 0.0021 23.7 2.7 42 276-323 23-65 (98)
220 2dj7_A Actin-binding LIM prote 21.0 54 0.0019 23.6 2.4 10 279-288 17-26 (80)
221 1x6a_A LIMK-2, LIM domain kina 20.9 84 0.0029 22.2 3.4 35 276-310 40-76 (81)
222 2dlo_A Thyroid receptor-intera 20.9 79 0.0027 22.4 3.3 32 277-308 41-73 (81)
223 1v6g_A Actin binding LIM prote 20.4 70 0.0024 22.7 2.9 12 279-290 17-28 (81)
224 2ehe_A Four and A half LIM dom 20.3 30 0.001 24.8 0.8 29 277-305 43-71 (82)
225 2m0e_A Zinc finger and BTB dom 20.1 47 0.0016 17.2 1.5 15 278-292 3-17 (29)
No 1
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=99.46 E-value=3.1e-14 Score=104.18 Aligned_cols=56 Identities=20% Similarity=0.366 Sum_probs=51.5
Q ss_pred CCCCCcCCCCCCCcccccCCcccccHHHHHHHhhcCCCCCCCCCCCCccCeeeCcc
Q 019860 277 RTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQIRRLFH 332 (334)
Q Consensus 277 ~~~CpiC~~~~~~p~~~~~~G~vfC~~Ci~~~~~~~~~CPv~~~~~~~~~l~ri~~ 332 (334)
...||||++.++||++++.|||+||..||.+|++++++||+|+.+++.+||+++..
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Lip~~~ 58 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEIVP 58 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCEECCC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcEECcc
Confidence 46899999999999887349999999999999999999999999999999999875
No 2
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.43 E-value=1.2e-13 Score=107.44 Aligned_cols=55 Identities=20% Similarity=0.211 Sum_probs=50.9
Q ss_pred CCCCCCCcCCCCCCCcccccCCcccccHHHHHHHhhcCCCCCCCCCCCCccCeeeC
Q 019860 275 PDRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQIRRL 330 (334)
Q Consensus 275 ~~~~~CpiC~~~~~~p~~~~~~G~vfC~~Ci~~~~~~~~~CPv~~~~~~~~~l~ri 330 (334)
++...||||++.++||++++ |||+||..||.+|+.++..||+|+.+++.++|+.-
T Consensus 12 p~~~~CpI~~~~m~dPV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~pn 66 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDPVRLP-SGTVMDRSIILRHLLNSPTDPFNRQMLTESMLEPV 66 (85)
T ss_dssp CTTTBCTTTCSBCSSEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEEC
T ss_pred chheECcccCchhcCCeECC-CCCEECHHHHHHHHhcCCCCCCCcCCCChHhcchH
Confidence 36889999999999999987 99999999999999999999999999998888753
No 3
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.43 E-value=4.3e-14 Score=105.02 Aligned_cols=57 Identities=18% Similarity=0.483 Sum_probs=51.9
Q ss_pred CCCCCCCcCCCCCCCc-------ccccCCcccccHHHHHHHhhcCCCCCCCCCCCCccCeeeCcc
Q 019860 275 PDRTICPLCSQKRANP-------SVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQIRRLFH 332 (334)
Q Consensus 275 ~~~~~CpiC~~~~~~p-------~~~~~~G~vfC~~Ci~~~~~~~~~CPv~~~~~~~~~l~ri~~ 332 (334)
.+...||||++.+.+| ++++ |||+||..||.+|++.+..||+|+.+++.+++++||.
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~l 71 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 71 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSCCCCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCC-CCChHhHHHHHHHHHcCCCCCCCCCccChhheeeccC
Confidence 4577999999999888 5555 9999999999999999999999999999999999984
No 4
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.41 E-value=1.8e-13 Score=103.78 Aligned_cols=54 Identities=20% Similarity=0.423 Sum_probs=49.0
Q ss_pred CCCCCCCcCCCCCCCcccccCCcccccHHHHHHHhhc-CCCCCCCCCCCCccCeee
Q 019860 275 PDRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQ-YKRCPVTLMPATVEQIRR 329 (334)
Q Consensus 275 ~~~~~CpiC~~~~~~p~~~~~~G~vfC~~Ci~~~~~~-~~~CPv~~~~~~~~~l~r 329 (334)
++...||||++.+.+|++++ |||+||..||.+|++. +..||+|+.+++.+++++
T Consensus 6 ~~~~~C~IC~~~~~~Pv~~~-CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~ 60 (78)
T 1t1h_A 6 PEYFRCPISLELMKDPVIVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTP 60 (78)
T ss_dssp SSSSSCTTTSCCCSSEEEET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEE
T ss_pred cccCCCCCccccccCCEEcC-CCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCcc
Confidence 36789999999999999886 9999999999999997 789999999998887765
No 5
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.40 E-value=8.9e-14 Score=100.95 Aligned_cols=56 Identities=18% Similarity=0.478 Sum_probs=50.7
Q ss_pred CCCCCCcCCCCCCCc-------ccccCCcccccHHHHHHHhhcCCCCCCCCCCCCccCeeeCcc
Q 019860 276 DRTICPLCSQKRANP-------SVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQIRRLFH 332 (334)
Q Consensus 276 ~~~~CpiC~~~~~~p-------~~~~~~G~vfC~~Ci~~~~~~~~~CPv~~~~~~~~~l~ri~~ 332 (334)
+...||||++.+.+| .+++ |||+||..||.+|++.+..||+|+.+++.+++++||.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~l 64 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 64 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEET-TSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCEEECCC
T ss_pred CCCCCCccChhhhCccccCCCEEeCC-CCCchhHHHHHHHHHcCCCCCCCCccCCccceeeeeC
Confidence 456899999999887 4554 9999999999999999999999999999999999984
No 6
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.38 E-value=2.3e-13 Score=109.11 Aligned_cols=54 Identities=17% Similarity=0.181 Sum_probs=50.7
Q ss_pred CCCCCCcCCCCCCCcccccCCcccccHHHHHHHhhcCCCCCCCCCCCCccCeeeC
Q 019860 276 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQIRRL 330 (334)
Q Consensus 276 ~~~~CpiC~~~~~~p~~~~~~G~vfC~~Ci~~~~~~~~~CPv~~~~~~~~~l~ri 330 (334)
+...||||++.++||++++ |||+||..||.+|+.++..||+|+.+++.++|+.-
T Consensus 28 ~~~~CpI~~~~m~dPV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn 81 (100)
T 2kre_A 28 DEFRDPLMDTLMTDPVRLP-SGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPV 81 (100)
T ss_dssp TTTBCTTTCSBCSSEEEET-TTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEEC
T ss_pred HhhCCcCccCcccCCeECC-CCCEEchHHHHHHHHcCCCCCCCCCCCChhhceEC
Confidence 6889999999999999987 99999999999999999999999999998888753
No 7
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.36 E-value=6.3e-13 Score=106.16 Aligned_cols=54 Identities=24% Similarity=0.286 Sum_probs=50.4
Q ss_pred CCCCCCcCCCCCCCcccccCCc-ccccHHHHHHHhhcCCCCCCCCCCCCccCeeeC
Q 019860 276 DRTICPLCSQKRANPSVVTVSG-FVFCYACIFKYVSQYKRCPVTLMPATVEQIRRL 330 (334)
Q Consensus 276 ~~~~CpiC~~~~~~p~~~~~~G-~vfC~~Ci~~~~~~~~~CPv~~~~~~~~~l~ri 330 (334)
+...||||++.++||++++ || |+||..||.+|+.++..||+|+.+++.++|++-
T Consensus 21 ~~~~CpI~~~~m~dPV~~~-cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~pn 75 (98)
T 1wgm_A 21 DEFLDPIMSTLMCDPVVLP-SSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPN 75 (98)
T ss_dssp TTTBCTTTCSBCSSEEECT-TTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEEC
T ss_pred HhcCCcCccccccCCeECC-CCCeEECHHHHHHHHHhCCCCCCCCCCCChhhceEc
Confidence 6889999999999999987 99 999999999999999999999999998888764
No 8
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=5.4e-13 Score=99.88 Aligned_cols=56 Identities=20% Similarity=0.377 Sum_probs=50.2
Q ss_pred CCCCCCCcCCCCCCCcccccCCcccccHHHHHHHhhcCCCCCCCCCCCCccCeeeC
Q 019860 275 PDRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQIRRL 330 (334)
Q Consensus 275 ~~~~~CpiC~~~~~~p~~~~~~G~vfC~~Ci~~~~~~~~~CPv~~~~~~~~~l~ri 330 (334)
.+...||||++.+.+|+++..|||+||+.||.+|++.+..||+|+.+++.++++..
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 68 (72)
T 2djb_A 13 TPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLSG 68 (72)
T ss_dssp CGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSCCC
T ss_pred CCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccccccc
Confidence 35679999999999998874599999999999999999999999999998887654
No 9
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=4.2e-13 Score=100.21 Aligned_cols=54 Identities=22% Similarity=0.415 Sum_probs=49.2
Q ss_pred CCCCCCcCCCCCCCcccccCCcccccHHHHHHHhhcCCCCCCCCCCCCccCeeeC
Q 019860 276 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQIRRL 330 (334)
Q Consensus 276 ~~~~CpiC~~~~~~p~~~~~~G~vfC~~Ci~~~~~~~~~CPv~~~~~~~~~l~ri 330 (334)
+...|+||++.+.+|++++ |||+||+.||.+|+..+..||+|+.++..+++++-
T Consensus 14 ~~~~C~IC~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~p 67 (71)
T 2d8t_A 14 TVPECAICLQTCVHPVSLP-CKHVFCYLCVKGASWLGKRCALCRQEIPEDFLDSG 67 (71)
T ss_dssp SCCBCSSSSSBCSSEEEET-TTEEEEHHHHHHCTTCSSBCSSSCCBCCHHHHSCS
T ss_pred CCCCCccCCcccCCCEEcc-CCCHHHHHHHHHHHHCCCcCcCcCchhCHhhccCC
Confidence 4678999999999998887 99999999999999999999999999988777653
No 10
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=7.8e-13 Score=97.23 Aligned_cols=52 Identities=19% Similarity=0.482 Sum_probs=46.4
Q ss_pred CCCCCCCcCCCCCCCcccccCCcccccHHHHHHHhh-cCCCCCCCCCCCCccCe
Q 019860 275 PDRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVS-QYKRCPVTLMPATVEQI 327 (334)
Q Consensus 275 ~~~~~CpiC~~~~~~p~~~~~~G~vfC~~Ci~~~~~-~~~~CPv~~~~~~~~~l 327 (334)
.+...||||++.+++|++++ |||+||+.||.+|++ ....||+|+.+++.++|
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPKQTE-CGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65 (66)
T ss_dssp CCCEECTTTCCEESSCCCCS-SSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred CcCCCCCCCChHhcCeeECC-CCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence 35678999999999998876 999999999999995 56799999999988775
No 11
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=1.6e-12 Score=97.02 Aligned_cols=53 Identities=26% Similarity=0.678 Sum_probs=47.4
Q ss_pred CCCCCCCcCCCCCCCcccccCCcccccHHHHHHHhh---cCCCCCCCCCCCCccCee
Q 019860 275 PDRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVS---QYKRCPVTLMPATVEQIR 328 (334)
Q Consensus 275 ~~~~~CpiC~~~~~~p~~~~~~G~vfC~~Ci~~~~~---~~~~CPv~~~~~~~~~l~ 328 (334)
.+...||||++.+.+|.+++ |||+||+.||.+|++ .+..||+|+.+++.++++
T Consensus 18 ~~~~~C~IC~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~r 73 (73)
T 2ysl_A 18 QEEVICPICLDILQKPVTID-CGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAIR 73 (73)
T ss_dssp CCCCBCTTTCSBCSSEEECT-TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCCC
T ss_pred ccCCEeccCCcccCCeEEcC-CCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccCC
Confidence 35779999999999999886 999999999999997 456999999999988874
No 12
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=3e-12 Score=98.70 Aligned_cols=57 Identities=21% Similarity=0.564 Sum_probs=49.3
Q ss_pred CCCCCCCcCCCCCCC----cccccCCcccccHHHHHHHhhcC---CCCCCCCCCCCccCeeeCcc
Q 019860 275 PDRTICPLCSQKRAN----PSVVTVSGFVFCYACIFKYVSQY---KRCPVTLMPATVEQIRRLFH 332 (334)
Q Consensus 275 ~~~~~CpiC~~~~~~----p~~~~~~G~vfC~~Ci~~~~~~~---~~CPv~~~~~~~~~l~ri~~ 332 (334)
.+...||||.+.+.+ |.+++ |||+||..||.+|++.+ .+||+|+.++...++..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i~~l~~ 76 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKITRITSLTQLTD 76 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECS-SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSSTTTSEE
T ss_pred cCCCCCccCCccccccCCCeEECC-CCChhhHHHHHHHHHcCCCCcCCCCCCCcccchhHHHHHH
Confidence 356789999999999 88886 99999999999999986 79999999988777665543
No 13
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.27 E-value=2.6e-12 Score=94.10 Aligned_cols=58 Identities=29% Similarity=0.573 Sum_probs=48.3
Q ss_pred CCCCCCcCCC-CCCCcc---cccCCcccccHHHHHHHhhc-CCCCCCCCCCCCccCeeeCccC
Q 019860 276 DRTICPLCSQ-KRANPS---VVTVSGFVFCYACIFKYVSQ-YKRCPVTLMPATVEQIRRLFHD 333 (334)
Q Consensus 276 ~~~~CpiC~~-~~~~p~---~~~~~G~vfC~~Ci~~~~~~-~~~CPv~~~~~~~~~l~ri~~~ 333 (334)
+...||||++ .+.+|. ++..|||+||..||.+|+.+ ...||+|+.+++.+++++.+.+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~ 64 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQLFE 64 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEECCC
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceeeccc
Confidence 4568999999 888984 33359999999999999765 4789999999999999876543
No 14
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.27 E-value=7.7e-12 Score=95.45 Aligned_cols=55 Identities=24% Similarity=0.562 Sum_probs=49.6
Q ss_pred CCCCCCcCCCCCCCcccccCCcccccHHHHHHHhhc------CCCCCCCCCCCCccCeeeCc
Q 019860 276 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQ------YKRCPVTLMPATVEQIRRLF 331 (334)
Q Consensus 276 ~~~~CpiC~~~~~~p~~~~~~G~vfC~~Ci~~~~~~------~~~CPv~~~~~~~~~l~ri~ 331 (334)
+...||||.+.+.+|.+++ |||+||..||.+|++. ...||+|+.+++.+++++-+
T Consensus 18 ~~~~C~IC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~ 78 (85)
T 2ecw_A 18 EEVTCPICLELLKEPVSAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNL 78 (85)
T ss_dssp TTTSCTTTCSCCSSCEECT-TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECS
T ss_pred cCCCCcCCChhhCcceeCC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCH
Confidence 5679999999999999886 9999999999999998 77999999999988887654
No 15
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=5.8e-12 Score=96.23 Aligned_cols=47 Identities=26% Similarity=0.475 Sum_probs=43.7
Q ss_pred CCCCCCcCCCCCCCcccccCCcccccHHHHHHHhhcCCCCCCCCCCCC
Q 019860 276 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPAT 323 (334)
Q Consensus 276 ~~~~CpiC~~~~~~p~~~~~~G~vfC~~Ci~~~~~~~~~CPv~~~~~~ 323 (334)
+...||||++.+.+|++++ |||+||+.||.+|++....||+|+.++.
T Consensus 14 ~~~~C~IC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 14 IPFRCFICRQAFQNPVVTK-CRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCSBCSSSCSBCCSEEECT-TSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCcCCCchhcCeeEcc-CCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 4678999999999998876 9999999999999999999999999875
No 16
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.25 E-value=3.7e-12 Score=101.55 Aligned_cols=56 Identities=16% Similarity=0.482 Sum_probs=49.8
Q ss_pred CCCCCCcCCCCCCCcccccCCcccccHHHHHHHhhcC-CCCCCCCCCCCccCeeeCc
Q 019860 276 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQY-KRCPVTLMPATVEQIRRLF 331 (334)
Q Consensus 276 ~~~~CpiC~~~~~~p~~~~~~G~vfC~~Ci~~~~~~~-~~CPv~~~~~~~~~l~ri~ 331 (334)
+...||||++.+.+|+.+..|||+||+.||.+|++.. ..||+|+.++..++|++..
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~ 77 (100)
T 3lrq_A 21 EVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCR 77 (100)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECT
T ss_pred CCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhH
Confidence 4678999999999998833499999999999999998 6999999999999988754
No 17
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=9.8e-12 Score=94.84 Aligned_cols=56 Identities=27% Similarity=0.564 Sum_probs=49.6
Q ss_pred CCCCCCCcCCCCCCCcccccCCcccccHHHHHHHhhc------CCCCCCCCCCCCccCeeeCc
Q 019860 275 PDRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQ------YKRCPVTLMPATVEQIRRLF 331 (334)
Q Consensus 275 ~~~~~CpiC~~~~~~p~~~~~~G~vfC~~Ci~~~~~~------~~~CPv~~~~~~~~~l~ri~ 331 (334)
.+...||||.+.+.+|.+++ |||+||..|+.+|++. ...||+|+.++..+++++-+
T Consensus 17 ~~~~~C~IC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~ 78 (85)
T 2ecv_A 17 KEEVTCPICLELLTQPLSLD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNR 78 (85)
T ss_dssp CCCCCCTTTCSCCSSCBCCS-SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSC
T ss_pred cCCCCCCCCCcccCCceeCC-CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccH
Confidence 35679999999999999886 9999999999999987 78999999999888876543
No 18
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.24 E-value=4.9e-12 Score=95.25 Aligned_cols=49 Identities=22% Similarity=0.576 Sum_probs=43.5
Q ss_pred CCCCCCCcCCCCCCCcccccCCcccccHHHHHHHhhcC--CCCCCCCCCCC
Q 019860 275 PDRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQY--KRCPVTLMPAT 323 (334)
Q Consensus 275 ~~~~~CpiC~~~~~~p~~~~~~G~vfC~~Ci~~~~~~~--~~CPv~~~~~~ 323 (334)
.+...||||++.+.+|++++.|||+||+.||.+|++.+ ..||+|+.+..
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 13 PDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp CGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred CCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 35679999999999998876599999999999999976 68999999854
No 19
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.23 E-value=7.5e-12 Score=97.71 Aligned_cols=54 Identities=20% Similarity=0.539 Sum_probs=46.0
Q ss_pred CCCCCCCcCCCCCCCcccccCCcccccHHHHHHHhhcC--CCCCCCCCCC-CccCee
Q 019860 275 PDRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQY--KRCPVTLMPA-TVEQIR 328 (334)
Q Consensus 275 ~~~~~CpiC~~~~~~p~~~~~~G~vfC~~Ci~~~~~~~--~~CPv~~~~~-~~~~l~ 328 (334)
.+...||||++.+.+|++++.|||+||..||.+|+... ..||+|+.++ ..++++
T Consensus 11 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~ 67 (92)
T 3ztg_A 11 PDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALI 67 (92)
T ss_dssp CTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCE
T ss_pred CcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccC
Confidence 36789999999999998875599999999999999865 5999999996 455554
No 20
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.23 E-value=2e-12 Score=97.81 Aligned_cols=55 Identities=24% Similarity=0.552 Sum_probs=48.5
Q ss_pred CCCCCCCcCCCCCCCcccccCCcccccHHHHHHHhhc-------CCCCCCCCCCCCccCeeeC
Q 019860 275 PDRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQ-------YKRCPVTLMPATVEQIRRL 330 (334)
Q Consensus 275 ~~~~~CpiC~~~~~~p~~~~~~G~vfC~~Ci~~~~~~-------~~~CPv~~~~~~~~~l~ri 330 (334)
.+...||||++.+.+|.+++ |||+||..||.+|++. ...||+|+.+++.+++++-
T Consensus 10 ~~~~~C~IC~~~~~~p~~l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n 71 (79)
T 2egp_A 10 QEEVTCPICLELLTEPLSLD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQAN 71 (79)
T ss_dssp CCCCEETTTTEECSSCCCCS-SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTC
T ss_pred ccCCCCcCCCcccCCeeECC-CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcC
Confidence 35779999999999999886 9999999999999987 6799999999987776643
No 21
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.23 E-value=5.6e-12 Score=99.97 Aligned_cols=54 Identities=20% Similarity=0.476 Sum_probs=48.4
Q ss_pred CCCCCCcCCCCCCCcccccCCcccccHHHHHHHhhcCCCCCCCCCCCCccCeee
Q 019860 276 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQIRR 329 (334)
Q Consensus 276 ~~~~CpiC~~~~~~p~~~~~~G~vfC~~Ci~~~~~~~~~CPv~~~~~~~~~l~r 329 (334)
+...||||.+.+.+|.++..|||+||..||.+|+..+..||+|+.+++..++++
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~ 74 (99)
T 2y43_A 21 DLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKN 74 (99)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEE
T ss_pred CCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhhCCc
Confidence 457899999999999887459999999999999999999999999998877764
No 22
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.22 E-value=4.8e-12 Score=99.99 Aligned_cols=55 Identities=15% Similarity=0.309 Sum_probs=46.4
Q ss_pred CCCCCCCcCCCCCCCcccccCCcccccHHHHHHHhhcC------CCCCCCCC--C-CCccCeee
Q 019860 275 PDRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQY------KRCPVTLM--P-ATVEQIRR 329 (334)
Q Consensus 275 ~~~~~CpiC~~~~~~p~~~~~~G~vfC~~Ci~~~~~~~------~~CPv~~~--~-~~~~~l~r 329 (334)
.+...||||++.++||++++.|||+||..||.+|+.++ .+||+|+. . ++.++|++
T Consensus 5 ~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~p 68 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQ 68 (94)
T ss_dssp SSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEE
T ss_pred CcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcC
Confidence 35789999999999999885599999999999999875 39999554 4 77888764
No 23
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.22 E-value=5e-12 Score=111.43 Aligned_cols=54 Identities=20% Similarity=0.166 Sum_probs=48.9
Q ss_pred CCCCCCcCCCCCCCcccccCCcccccHHHHHHHhhcCC-CCCCCCCCCCccCeeeC
Q 019860 276 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYK-RCPVTLMPATVEQIRRL 330 (334)
Q Consensus 276 ~~~~CpiC~~~~~~p~~~~~~G~vfC~~Ci~~~~~~~~-~CPv~~~~~~~~~l~ri 330 (334)
+...||||++.++||++++ |||+||..||..|+..++ .||+|+.+++..+|++-
T Consensus 105 ~~f~CPI~~elm~DPV~~~-~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN 159 (179)
T 2f42_A 105 DYLCGKISFELMREPCITP-SGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPN 159 (179)
T ss_dssp GGGBCTTTCSBCSSEEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEEC
T ss_pred HhhcccCccccCCCCeECC-CCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcch
Confidence 4779999999999999986 999999999999999865 59999999998888764
No 24
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=6.8e-12 Score=92.24 Aligned_cols=49 Identities=20% Similarity=0.511 Sum_probs=43.0
Q ss_pred CCCCCCCcCCCCCCCc-------ccccCCcccccHHHHHHHhhcCCCCCCCCCCCCc
Q 019860 275 PDRTICPLCSQKRANP-------SVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATV 324 (334)
Q Consensus 275 ~~~~~CpiC~~~~~~p-------~~~~~~G~vfC~~Ci~~~~~~~~~CPv~~~~~~~ 324 (334)
.+...||||++.+.+| .+++ |||+||..||.+|++.+..||+|+.+++.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECS-SSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCC-CCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 3577899999999887 5555 99999999999999999999999988753
No 25
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.22 E-value=1.3e-11 Score=90.82 Aligned_cols=48 Identities=29% Similarity=0.710 Sum_probs=42.4
Q ss_pred CCCCCCcCCCCCCCcccccCCcccccHHHHHHHhhcCCCCCCCCCCCC
Q 019860 276 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPAT 323 (334)
Q Consensus 276 ~~~~CpiC~~~~~~p~~~~~~G~vfC~~Ci~~~~~~~~~CPv~~~~~~ 323 (334)
+...||||++.+.+|.+...|||+||+.||.+|++.+..||+|+.+++
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 467899999999998544459999999999999999999999998865
No 26
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.21 E-value=5.7e-12 Score=116.39 Aligned_cols=53 Identities=23% Similarity=0.226 Sum_probs=48.0
Q ss_pred CCCCCCcCCCCCCCcccccCCcccccHHHHHHHhhcCCC-CCCCCCCCCccCeee
Q 019860 276 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKR-CPVTLMPATVEQIRR 329 (334)
Q Consensus 276 ~~~~CpiC~~~~~~p~~~~~~G~vfC~~Ci~~~~~~~~~-CPv~~~~~~~~~l~r 329 (334)
+...||||++.++||++++ |||+||..||.+|+..++. ||+|+.+++..+|++
T Consensus 207 ~~~~c~i~~~~~~dPv~~~-~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~ 260 (281)
T 2c2l_A 207 DYLCGKISFELMREPCITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIP 260 (281)
T ss_dssp STTBCTTTCSBCSSEEECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEE
T ss_pred cccCCcCcCCHhcCCeECC-CCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcc
Confidence 5779999999999999987 9999999999999998654 999999999888775
No 27
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.18 E-value=1.4e-11 Score=93.30 Aligned_cols=53 Identities=23% Similarity=0.458 Sum_probs=46.2
Q ss_pred CCCCCCcCCCCCCCcc---cccCCcccccHHHHHHHhhcCCCCCCCCCCCCccCeee
Q 019860 276 DRTICPLCSQKRANPS---VVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQIRR 329 (334)
Q Consensus 276 ~~~~CpiC~~~~~~p~---~~~~~G~vfC~~Ci~~~~~~~~~CPv~~~~~~~~~l~r 329 (334)
+...|+||++.+.++. +++ |||+||+.||.+|++.+..||+|+.++..+++..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 69 (78)
T 2ect_A 14 SGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTAT 69 (78)
T ss_dssp SSCCCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSCC
T ss_pred CCCCCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHcCCcCcCcCCccCCcccCC
Confidence 4678999999998763 345 9999999999999999999999999998877664
No 28
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.18 E-value=9e-12 Score=102.69 Aligned_cols=57 Identities=18% Similarity=0.481 Sum_probs=52.3
Q ss_pred CCCCCCcCCCCCCCc-------ccccCCcccccHHHHHHHhhcCCCCCCCCCCCCccCeeeCccC
Q 019860 276 DRTICPLCSQKRANP-------SVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQIRRLFHD 333 (334)
Q Consensus 276 ~~~~CpiC~~~~~~p-------~~~~~~G~vfC~~Ci~~~~~~~~~CPv~~~~~~~~~l~ri~~~ 333 (334)
+...||||++.+++| ++++ |||+||+.||.+|++.+..||+|+.+++.++++++|.+
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~l~i~ 69 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYIG 69 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEET-TCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEECBCS
T ss_pred CCCCCcccChhhhCccccccCeEecC-CCChhhHHHHHHHHHhCCCCCCCCCcCccccccccccC
Confidence 567899999999998 6665 99999999999999999999999999999999998864
No 29
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.17 E-value=1.2e-11 Score=99.64 Aligned_cols=50 Identities=22% Similarity=0.537 Sum_probs=45.2
Q ss_pred CCCCCCcCCCCCCCcccccCCcccccHHHHHHHhhcCCCCCCCCCCCCcc
Q 019860 276 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVE 325 (334)
Q Consensus 276 ~~~~CpiC~~~~~~p~~~~~~G~vfC~~Ci~~~~~~~~~CPv~~~~~~~~ 325 (334)
+...||||.+.+.+|+++..|||+||+.||.+|++....||+|+.++...
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp GGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred CcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 46789999999999988744999999999999999999999999988754
No 30
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=2.1e-11 Score=88.54 Aligned_cols=43 Identities=28% Similarity=0.802 Sum_probs=38.7
Q ss_pred CCCCCCCcCCCCCCCcccccCCcccccHHHHHHHhhc---CCCCCCC
Q 019860 275 PDRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQ---YKRCPVT 318 (334)
Q Consensus 275 ~~~~~CpiC~~~~~~p~~~~~~G~vfC~~Ci~~~~~~---~~~CPv~ 318 (334)
.+...||||++.+.+|++++ |||+||+.||.+|++. ..+||+|
T Consensus 18 ~~~~~C~IC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQKPVTID-CGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSSCEECT-TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhCCeEEeC-CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 45789999999999999886 9999999999999984 5689998
No 31
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.17 E-value=1e-11 Score=104.53 Aligned_cols=47 Identities=19% Similarity=0.479 Sum_probs=43.1
Q ss_pred CCCCCcCCCCCCCcccccCCcccccHHHHHHHhhcCCCCCCCCCCCCc
Q 019860 277 RTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATV 324 (334)
Q Consensus 277 ~~~CpiC~~~~~~p~~~~~~G~vfC~~Ci~~~~~~~~~CPv~~~~~~~ 324 (334)
...||||++.+.+|++++ |||+||..||.+|+..+..||+|+.++..
T Consensus 53 ~~~C~iC~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 53 ELQCIICSEYFIEAVTLN-CAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp HSBCTTTCSBCSSEEEET-TSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred cCCCcccCcccCCceECC-CCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 347999999999999887 99999999999999999999999988753
No 32
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.17 E-value=1.9e-11 Score=98.51 Aligned_cols=53 Identities=25% Similarity=0.575 Sum_probs=47.4
Q ss_pred CCCCCcCCCCCCCcccccCCcccccHHHHHHHhhcCC---CCCCCCCCCCccCeeeC
Q 019860 277 RTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYK---RCPVTLMPATVEQIRRL 330 (334)
Q Consensus 277 ~~~CpiC~~~~~~p~~~~~~G~vfC~~Ci~~~~~~~~---~CPv~~~~~~~~~l~ri 330 (334)
...||||.+.+.+|.+++ |||+||..||.+|+...+ .||+|+.+++.+++++.
T Consensus 21 ~~~C~IC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~ 76 (112)
T 1jm7_A 21 ILECPICLELIKEPVSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQES 76 (112)
T ss_dssp HTSCSSSCCCCSSCCBCT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCC
T ss_pred CCCCcccChhhcCeEECC-CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCcc
Confidence 468999999999998886 999999999999999764 89999999988887654
No 33
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.17 E-value=1.9e-11 Score=86.27 Aligned_cols=48 Identities=17% Similarity=0.459 Sum_probs=42.1
Q ss_pred CCCCCCcCCCCCCC---cccccCCcccccHHHHHHHhhcCCCCCCCCCCCC
Q 019860 276 DRTICPLCSQKRAN---PSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPAT 323 (334)
Q Consensus 276 ~~~~CpiC~~~~~~---p~~~~~~G~vfC~~Ci~~~~~~~~~CPv~~~~~~ 323 (334)
+...|+||++.+.+ +.+++.|||+||..||.+|++.+..||+|+.++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 56789999999987 5556459999999999999999999999998765
No 34
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=8.4e-12 Score=92.53 Aligned_cols=56 Identities=23% Similarity=0.486 Sum_probs=48.0
Q ss_pred CCCCCCCcCCCCCCCcccccCCcccccHHHHHHHhhcCCCCCCCCCCCCccCeeeCcc
Q 019860 275 PDRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQIRRLFH 332 (334)
Q Consensus 275 ~~~~~CpiC~~~~~~p~~~~~~G~vfC~~Ci~~~~~~~~~CPv~~~~~~~~~l~ri~~ 332 (334)
.+...|+||++.+.+ ++++ |||+||+.||.+|++.+..||+|+.++...+...++.
T Consensus 13 ~~~~~C~IC~~~~~~-~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~ 68 (70)
T 2ecn_A 13 TDEEECCICMDGRAD-LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGANESSGPS 68 (70)
T ss_dssp CCCCCCSSSCCSCCS-EEET-TTEEECHHHHHHSSCCCSSCHHHHHCTTCCCCCCCCC
T ss_pred CCCCCCeeCCcCccC-cccC-CCCcccHHHHHHHHHCcCcCCCcCCcccCCCccccCC
Confidence 356799999999999 6665 9999999999999999999999999988766555543
No 35
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.15 E-value=2.6e-11 Score=85.44 Aligned_cols=47 Identities=21% Similarity=0.540 Sum_probs=40.9
Q ss_pred CCCCCCcCCCCCCC----cccccCCcccccHHHHHHHhhcCCCCCCCCCCCC
Q 019860 276 DRTICPLCSQKRAN----PSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPAT 323 (334)
Q Consensus 276 ~~~~CpiC~~~~~~----p~~~~~~G~vfC~~Ci~~~~~~~~~CPv~~~~~~ 323 (334)
+...|+||++.+.+ +.+++ |||+||..||.+|++.+..||+|+.++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECT-TSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecC-CCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 46789999999876 45555 9999999999999999999999998764
No 36
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.15 E-value=1.6e-11 Score=100.58 Aligned_cols=54 Identities=26% Similarity=0.502 Sum_probs=48.1
Q ss_pred CCCCCCCcCCCCCCCcccccCCcccccHHHHHHHhhcCC-CCCCCCCCCCccCeee
Q 019860 275 PDRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYK-RCPVTLMPATVEQIRR 329 (334)
Q Consensus 275 ~~~~~CpiC~~~~~~p~~~~~~G~vfC~~Ci~~~~~~~~-~CPv~~~~~~~~~l~r 329 (334)
.+...||||++.+.+|++++ |||+||+.||.+|++..+ .||+|+.+++.+++.+
T Consensus 16 ~~~~~C~IC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~ 70 (118)
T 3hct_A 16 ESKYECPICLMALREAVQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFP 70 (118)
T ss_dssp CGGGBCTTTCSBCSSEEECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEE
T ss_pred CCCCCCCcCChhhcCeEECC-cCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhccc
Confidence 35679999999999998886 999999999999999876 9999999998877654
No 37
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=4.9e-11 Score=84.79 Aligned_cols=43 Identities=28% Similarity=0.676 Sum_probs=38.2
Q ss_pred CCCCCCCcCCCCCCCcccccCCcccccHHHHHHHh---hcCCCCCCC
Q 019860 275 PDRTICPLCSQKRANPSVVTVSGFVFCYACIFKYV---SQYKRCPVT 318 (334)
Q Consensus 275 ~~~~~CpiC~~~~~~p~~~~~~G~vfC~~Ci~~~~---~~~~~CPv~ 318 (334)
.+...||||++.+.+|.+++ |||+||..||.+|+ .....||+|
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEPVIIE-CGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSCCCCS-SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCccEeCC-CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 45779999999999998886 99999999999995 456899998
No 38
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.12 E-value=2.9e-11 Score=99.73 Aligned_cols=51 Identities=14% Similarity=0.279 Sum_probs=44.5
Q ss_pred CCCCCCcCCCCCCCcccccCCcccccHHHHHHHhhcCC-CCCCCCCCCCc-cCe
Q 019860 276 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYK-RCPVTLMPATV-EQI 327 (334)
Q Consensus 276 ~~~~CpiC~~~~~~p~~~~~~G~vfC~~Ci~~~~~~~~-~CPv~~~~~~~-~~l 327 (334)
+...||||.+.+.+|++++ |||+||..||..|+.... .||+|+.+++. .++
T Consensus 51 ~~~~C~IC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~ 103 (124)
T 3fl2_A 51 ETFQCICCQELVFRPITTV-CQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAM 103 (124)
T ss_dssp HHTBCTTTSSBCSSEEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCC
T ss_pred cCCCCCcCChHHcCcEEee-CCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCC
Confidence 4568999999999999886 999999999999998654 99999999876 444
No 39
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.11 E-value=2.2e-11 Score=100.34 Aligned_cols=57 Identities=18% Similarity=0.483 Sum_probs=51.7
Q ss_pred CCCCCCCcCCCCCCCc-------ccccCCcccccHHHHHHHhhcCCCCCCCCCCCCccCeeeCcc
Q 019860 275 PDRTICPLCSQKRANP-------SVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQIRRLFH 332 (334)
Q Consensus 275 ~~~~~CpiC~~~~~~p-------~~~~~~G~vfC~~Ci~~~~~~~~~CPv~~~~~~~~~l~ri~~ 332 (334)
++...|+||++.+.++ +.++ |||+||..||.+|++.++.||+|+.++..+++++||.
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~ 133 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 133 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEET-TSBEEEHHHHHHHHHHCSBCTTTCCBCCGGGEEEECC
T ss_pred CCCCCCCCCCCccccccccCcceEeCC-CCChhhHHHHHHHHHcCCCCCCCCCcCChhcceeeeC
Confidence 3577899999999887 5555 9999999999999999999999999999999999984
No 40
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.11 E-value=3.6e-11 Score=88.34 Aligned_cols=54 Identities=26% Similarity=0.581 Sum_probs=48.3
Q ss_pred CCCCCCcCCCCCCCcccc--cCCccc-ccHHHHHHHhhcCCCCCCCCCCCCccCeeeCcc
Q 019860 276 DRTICPLCSQKRANPSVV--TVSGFV-FCYACIFKYVSQYKRCPVTLMPATVEQIRRLFH 332 (334)
Q Consensus 276 ~~~~CpiC~~~~~~p~~~--~~~G~v-fC~~Ci~~~~~~~~~CPv~~~~~~~~~l~ri~~ 332 (334)
+...|+||++...|++++ + |||+ ||+.|+.+|.+.+++||+|+.++ +++++||.
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i--~~~i~i~~ 63 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGK-TGHLMACFTCAKKLKKRNKPCPVCRQPI--QMIVLTYF 63 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETT-EEEEEECHHHHHHHHHTTCCCTTTCCCC--CEEEEEEC
T ss_pred CcCCCCcCCCCCCCEEEECCC-CCChhhHHHHHHHHHHcCCcCCCcCcch--hceEeeec
Confidence 467899999999999876 6 9999 89999999999999999999876 57889885
No 41
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=9.2e-11 Score=87.78 Aligned_cols=47 Identities=21% Similarity=0.504 Sum_probs=41.2
Q ss_pred CCCCCCcCCCCCCCccc---ccCCcccccHHHHHHHhhcCCCCCCCCCCCC
Q 019860 276 DRTICPLCSQKRANPSV---VTVSGFVFCYACIFKYVSQYKRCPVTLMPAT 323 (334)
Q Consensus 276 ~~~~CpiC~~~~~~p~~---~~~~G~vfC~~Ci~~~~~~~~~CPv~~~~~~ 323 (334)
+...|+||++.+.++.. ++ |||+||+.||.+|++.+..||+|+.++.
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVL 63 (74)
T ss_dssp CSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBCS
T ss_pred CCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCcccc
Confidence 46789999999988743 35 9999999999999999999999998764
No 42
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.09 E-value=1.2e-10 Score=85.96 Aligned_cols=48 Identities=15% Similarity=0.410 Sum_probs=40.9
Q ss_pred CCCCCCcCCCCCCC---cccccCCcccccHHHHHHHhhcCCCCCCCCCCCCc
Q 019860 276 DRTICPLCSQKRAN---PSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATV 324 (334)
Q Consensus 276 ~~~~CpiC~~~~~~---p~~~~~~G~vfC~~Ci~~~~~~~~~CPv~~~~~~~ 324 (334)
+...|+||++.+.+ +.+++ |||+||..||.+|++.+..||+|+.++..
T Consensus 13 ~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 13 TEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEA 63 (69)
T ss_dssp CCCSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred CCCCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence 56789999998853 34565 99999999999999999999999988753
No 43
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.08 E-value=3.8e-11 Score=90.33 Aligned_cols=48 Identities=19% Similarity=0.481 Sum_probs=42.6
Q ss_pred CCCCCCcCCCCCCCc---ccccCCcccccHHHHHHHhhcCCCCCCCCCCCCc
Q 019860 276 DRTICPLCSQKRANP---SVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATV 324 (334)
Q Consensus 276 ~~~~CpiC~~~~~~p---~~~~~~G~vfC~~Ci~~~~~~~~~CPv~~~~~~~ 324 (334)
+...|+||++.+.++ .+++ |||+||..||.+|++.+..||+|+.++..
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 467899999998887 5566 99999999999999999999999988764
No 44
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.08 E-value=6e-11 Score=102.56 Aligned_cols=48 Identities=23% Similarity=0.492 Sum_probs=42.9
Q ss_pred CCCCCcCCCCCCCcccccCCcccccHHHHHHHhhc-CCCCCCCCCCCCc
Q 019860 277 RTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQ-YKRCPVTLMPATV 324 (334)
Q Consensus 277 ~~~CpiC~~~~~~p~~~~~~G~vfC~~Ci~~~~~~-~~~CPv~~~~~~~ 324 (334)
...||||++.+.+|+++..|||+||+.||.+|+.. +..||+|+.++..
T Consensus 54 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 54 ELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 45899999999999887459999999999999997 7899999999853
No 45
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.07 E-value=6e-11 Score=96.63 Aligned_cols=54 Identities=20% Similarity=0.514 Sum_probs=48.2
Q ss_pred CCCCCCcCCCCCCCcccccCCcccccHHHHHHHhhc-CCCCCCCCCCCCccCeeeC
Q 019860 276 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQ-YKRCPVTLMPATVEQIRRL 330 (334)
Q Consensus 276 ~~~~CpiC~~~~~~p~~~~~~G~vfC~~Ci~~~~~~-~~~CPv~~~~~~~~~l~ri 330 (334)
+...||||.+.+.+|++++ |||+||..||.+|++. ...||+|+.+++..++++.
T Consensus 22 ~~~~C~IC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 76 (116)
T 1rmd_A 22 KSISCQICEHILADPVETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESP 76 (116)
T ss_dssp HHTBCTTTCSBCSSEEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCC
T ss_pred CCCCCCCCCcHhcCcEEcC-CCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhcccc
Confidence 3578999999999998876 9999999999999997 6799999999988877643
No 46
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.07 E-value=6.9e-11 Score=101.23 Aligned_cols=49 Identities=14% Similarity=0.313 Sum_probs=44.3
Q ss_pred CCCCCCcCCCCCCCcccccCCcccccHHHHHHHhhcCC-CCCCCCCCCCcc
Q 019860 276 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYK-RCPVTLMPATVE 325 (334)
Q Consensus 276 ~~~~CpiC~~~~~~p~~~~~~G~vfC~~Ci~~~~~~~~-~CPv~~~~~~~~ 325 (334)
+...||||.+.+.+|++++ |||+||..||.+|+.... .||+|+.+++..
T Consensus 77 ~~~~C~IC~~~~~~pv~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQPVTTE-CFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSSEEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcCCEEcC-CCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 4568999999999999886 999999999999999765 899999998876
No 47
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=9.4e-11 Score=89.95 Aligned_cols=53 Identities=23% Similarity=0.448 Sum_probs=44.6
Q ss_pred CCCCCCcCCCCCCC--------------cccccCCcccccHHHHHHHhhcCCCCCCCCCCCCccCee
Q 019860 276 DRTICPLCSQKRAN--------------PSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQIR 328 (334)
Q Consensus 276 ~~~~CpiC~~~~~~--------------p~~~~~~G~vfC~~Ci~~~~~~~~~CPv~~~~~~~~~l~ 328 (334)
+...|+||++.+.+ +.+++.|||+||..||.+|++.++.||+|+.++..+++-
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~~~g 80 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQRIG 80 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEEEEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchhhcC
Confidence 35679999999876 335556999999999999999999999999998876653
No 48
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.05 E-value=7.8e-11 Score=86.27 Aligned_cols=54 Identities=17% Similarity=0.515 Sum_probs=47.8
Q ss_pred CCCCCCcCCCCCCCcccc--cCCccc-ccHHHHHHHhhcCCCCCCCCCCCCccCeeeCcc
Q 019860 276 DRTICPLCSQKRANPSVV--TVSGFV-FCYACIFKYVSQYKRCPVTLMPATVEQIRRLFH 332 (334)
Q Consensus 276 ~~~~CpiC~~~~~~p~~~--~~~G~v-fC~~Ci~~~~~~~~~CPv~~~~~~~~~l~ri~~ 332 (334)
+...|+||++...|++++ + |||+ ||+.|+.++.+..++||+|+.++ +++++||.
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i--~~~i~i~~ 62 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGR-TGHLVTCFHCARRLKKAGASCPICKKEI--QLVIKVFI 62 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETT-EEEEEECHHHHHHHHHTTCBCTTTCCBC--CEEEEEEE
T ss_pred cCCCCcccCCcCCCeEEEecC-CCCHhHHHHHHHHHHHhCCcCCCcCchh--hceEEEec
Confidence 456899999999999876 6 9998 99999999999989999999876 57888885
No 49
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.03 E-value=5.8e-11 Score=97.11 Aligned_cols=52 Identities=21% Similarity=0.563 Sum_probs=45.9
Q ss_pred CCCCCCcCCCCCCCcccccCCcccccHHHHHHHhhcCCCCCCCCCCCCccCeee
Q 019860 276 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQIRR 329 (334)
Q Consensus 276 ~~~~CpiC~~~~~~p~~~~~~G~vfC~~Ci~~~~~~~~~CPv~~~~~~~~~l~r 329 (334)
+...||||++.+.+|+++..|||+||..||.+|+. ..||+|+.++...+++.
T Consensus 21 ~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~~~~ 72 (117)
T 1jm7_B 21 KLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQDLKI 72 (117)
T ss_dssp HTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCSSCCC
T ss_pred hCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCccccccc
Confidence 46789999999999998834999999999999998 88999999987776653
No 50
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.03 E-value=8.9e-11 Score=91.91 Aligned_cols=47 Identities=17% Similarity=0.463 Sum_probs=41.5
Q ss_pred CCCCCCcCCCCCCC---cccccCCcccccHHHHHHHhhcCCCCCCCCCCCC
Q 019860 276 DRTICPLCSQKRAN---PSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPAT 323 (334)
Q Consensus 276 ~~~~CpiC~~~~~~---p~~~~~~G~vfC~~Ci~~~~~~~~~CPv~~~~~~ 323 (334)
+...|+||++.+.+ +.+++ |||+||..||.+|++.+..||+|+.++.
T Consensus 39 ~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRCMFP 88 (91)
T ss_dssp SCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred CCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence 46689999998877 56676 9999999999999999999999998764
No 51
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.96 E-value=1e-10 Score=99.19 Aligned_cols=50 Identities=16% Similarity=0.407 Sum_probs=43.5
Q ss_pred CCCCCCCCcCCCCCCCcccccCCcccccHHHHHHHhhcCC-CCCCCCCCCCc
Q 019860 274 PPDRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYK-RCPVTLMPATV 324 (334)
Q Consensus 274 ~~~~~~CpiC~~~~~~p~~~~~~G~vfC~~Ci~~~~~~~~-~CPv~~~~~~~ 324 (334)
.++...||||.+.+.+|+.++ |||+||..||.+|++..+ .||+|+.++..
T Consensus 28 l~~~~~C~IC~~~~~~pv~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 28 LEAKYLCSACRNVLRRPFQAQ-CGHRYCSFCLASILSSGPQNCAACVHEGIY 78 (141)
T ss_dssp CCGGGBCTTTCSBCSSEEECT-TSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred CCcCcCCCCCChhhcCcEECC-CCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence 346789999999999998775 999999999999998765 89999987643
No 52
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.95 E-value=1.4e-10 Score=94.26 Aligned_cols=48 Identities=17% Similarity=0.430 Sum_probs=43.0
Q ss_pred CCCCCCcCCCCCCCcccccCCcccccHHHHHHHhhc-CCCCCCCCCCCCc
Q 019860 276 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQ-YKRCPVTLMPATV 324 (334)
Q Consensus 276 ~~~~CpiC~~~~~~p~~~~~~G~vfC~~Ci~~~~~~-~~~CPv~~~~~~~ 324 (334)
+...||||.+.+.+|++++ |||+||..||.+|+.. ...||+|+.++..
T Consensus 14 ~~~~C~iC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 14 SECQCGICMEILVEPVTLP-CNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHBCTTTCSBCSSCEECT-TSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCccCCcccCceeEcC-CCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 4678999999999999986 9999999999999987 5789999998753
No 53
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.93 E-value=3.7e-10 Score=110.27 Aligned_cols=53 Identities=13% Similarity=0.447 Sum_probs=47.3
Q ss_pred CCCCCcCCCCCCCcccccCCcccccHHHHHHHhh-cCCCCCCCCCCCCccCeeeC
Q 019860 277 RTICPLCSQKRANPSVVTVSGFVFCYACIFKYVS-QYKRCPVTLMPATVEQIRRL 330 (334)
Q Consensus 277 ~~~CpiC~~~~~~p~~~~~~G~vfC~~Ci~~~~~-~~~~CPv~~~~~~~~~l~ri 330 (334)
...|+||.+...+|++++ |||+||..||.+|+. .+..||+|+.++...+++.+
T Consensus 332 ~~~C~ICle~~~~pv~lp-CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~i~v 385 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPIVV 385 (389)
T ss_dssp SSBCTTTSSSBCCEEEET-TCCEECHHHHHHHHHHTCSBCTTTCCBCCEEEECSC
T ss_pred CCCCCccCcCCCCeEEeC-CCChhhHHHHHHHHhcCCCCCCCCCCccCCceeEec
Confidence 368999999999998887 999999999999999 68999999999887766654
No 54
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.92 E-value=4.5e-10 Score=90.95 Aligned_cols=46 Identities=20% Similarity=0.356 Sum_probs=38.3
Q ss_pred CCCCCcCCCCCCCcc------------------cccCCcccccHHHHHHHhh-----cCCCCCCCCCCCC
Q 019860 277 RTICPLCSQKRANPS------------------VVTVSGFVFCYACIFKYVS-----QYKRCPVTLMPAT 323 (334)
Q Consensus 277 ~~~CpiC~~~~~~p~------------------~~~~~G~vfC~~Ci~~~~~-----~~~~CPv~~~~~~ 323 (334)
...||||++.+.++. ++ .|||+||..||.+|+. .+..||+|+....
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLT-KCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG 93 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEES-SSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecC-CCCCcccHHHHHHHHHcccCCCCCcCCCCCCccC
Confidence 458999999997764 44 4999999999999994 5679999997764
No 55
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.91 E-value=9.5e-10 Score=84.05 Aligned_cols=54 Identities=20% Similarity=0.482 Sum_probs=42.6
Q ss_pred CCCCCCCcCCCCCC--Cccccc-CCcccccHHHHHHHhhc-CCCCCCCCCCCCccCee
Q 019860 275 PDRTICPLCSQKRA--NPSVVT-VSGFVFCYACIFKYVSQ-YKRCPVTLMPATVEQIR 328 (334)
Q Consensus 275 ~~~~~CpiC~~~~~--~p~~~~-~~G~vfC~~Ci~~~~~~-~~~CPv~~~~~~~~~l~ 328 (334)
.+...||||+++++ ++.+.+ +|||.||..|+.++.+. ...||+|+.+.+..++.
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~ 66 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAV 66 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSSC
T ss_pred ccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCchh
Confidence 35778999999985 344432 29999999999999854 58999999998776654
No 56
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.91 E-value=3.9e-10 Score=80.42 Aligned_cols=46 Identities=17% Similarity=0.461 Sum_probs=40.5
Q ss_pred CCCCCCcCCCCCCCcccccCCcccccHHHHHHHhhcCCCCCCCCCCCCcc
Q 019860 276 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVE 325 (334)
Q Consensus 276 ~~~~CpiC~~~~~~p~~~~~~G~vfC~~Ci~~~~~~~~~CPv~~~~~~~~ 325 (334)
+...|+||++.+.+|.+++ |||+||..||.+ ....||+|+.++...
T Consensus 5 ~~~~C~IC~~~~~~p~~l~-CgH~fC~~Ci~~---~~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 5 QFLRCQQCQAEAKCPKLLP-CLHTLCSGCLEA---SGMQCPICQAPWPLG 50 (56)
T ss_dssp CCSSCSSSCSSCBCCSCST-TSCCSBTTTCSS---SSSSCSSCCSSSSCC
T ss_pred cCCCceEeCCccCCeEEcC-CCCcccHHHHcc---CCCCCCcCCcEeecC
Confidence 5678999999999999887 999999999987 467899999987654
No 57
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.91 E-value=3.8e-10 Score=104.50 Aligned_cols=54 Identities=20% Similarity=0.407 Sum_probs=47.3
Q ss_pred CCCCCCcCCCCCCCcccccCCcccccHHHHHHHhhcC--CCCCC--CCCCCCccCeee
Q 019860 276 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQY--KRCPV--TLMPATVEQIRR 329 (334)
Q Consensus 276 ~~~~CpiC~~~~~~p~~~~~~G~vfC~~Ci~~~~~~~--~~CPv--~~~~~~~~~l~r 329 (334)
...+||||++.+++|+....|||+||..||.+|++++ ..||| |+.++..++|+.
T Consensus 180 ~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~p 237 (267)
T 3htk_C 180 IELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVR 237 (267)
T ss_dssp CCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEE
T ss_pred eeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCc
Confidence 4679999999999998764599999999999999875 47999 999998888864
No 58
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.90 E-value=5.5e-10 Score=96.85 Aligned_cols=55 Identities=25% Similarity=0.489 Sum_probs=48.2
Q ss_pred CCCCCCCCcCCCCCCCcccccCCcccccHHHHHHHhhcC-CCCCCCCCCCCccCeee
Q 019860 274 PPDRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQY-KRCPVTLMPATVEQIRR 329 (334)
Q Consensus 274 ~~~~~~CpiC~~~~~~p~~~~~~G~vfC~~Ci~~~~~~~-~~CPv~~~~~~~~~l~r 329 (334)
.++...||||.+.+.+|+.++ |||+||..||.+|++.. .+||+|+.+++.+++.+
T Consensus 15 ~~~~~~C~IC~~~~~~pv~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~ 70 (170)
T 3hcs_A 15 LESKYECPICLMALREAVQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFP 70 (170)
T ss_dssp CCGGGBCTTTCSBCSSEEECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEE
T ss_pred CCCCCCCCCCChhhcCcEECC-CCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhh
Confidence 346789999999999998876 99999999999999875 49999999998877654
No 59
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.81 E-value=1.6e-09 Score=81.61 Aligned_cols=49 Identities=18% Similarity=0.520 Sum_probs=43.0
Q ss_pred CCCCCcCCCCCCCcccccCCccc-ccHHHHHHHhhcCCCCCCCCCCCCccCeeeCcc
Q 019860 277 RTICPLCSQKRANPSVVTVSGFV-FCYACIFKYVSQYKRCPVTLMPATVEQIRRLFH 332 (334)
Q Consensus 277 ~~~CpiC~~~~~~p~~~~~~G~v-fC~~Ci~~~~~~~~~CPv~~~~~~~~~l~ri~~ 332 (334)
...|+||++...+|+.++ |||+ ||..|+.+| .+||+|+.+++ +.++||.
T Consensus 24 ~~~C~iC~~~~~~~~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~--~~~~i~~ 73 (74)
T 4ic3_A 24 EKLCKICMDRNIAIVFVP-CGHLVTCKQCAEAV----DKCPMCYTVIT--FKQKILM 73 (74)
T ss_dssp HTBCTTTSSSBCCEEEET-TCCBCCCHHHHTTC----SBCTTTCCBCS--EEEECBC
T ss_pred CCCCCCCCCCCCCEEEcC-CCChhHHHHhhhcC----ccCCCcCcCcc--CcEEEee
Confidence 568999999999999887 9999 999999988 89999997654 5677775
No 60
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.78 E-value=3.3e-09 Score=85.75 Aligned_cols=51 Identities=16% Similarity=0.400 Sum_probs=42.5
Q ss_pred CCCCCCcCCCCCCCcc-----------------cccCCcccccHHHHHHHhhcCCCCCCCCCCCCccC
Q 019860 276 DRTICPLCSQKRANPS-----------------VVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQ 326 (334)
Q Consensus 276 ~~~~CpiC~~~~~~p~-----------------~~~~~G~vfC~~Ci~~~~~~~~~CPv~~~~~~~~~ 326 (334)
+...|+||++.+.+++ ++..|||+|+..||.+|++.+..||+|+.+...++
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~~~ 103 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQK 103 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCCEEE
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcceeec
Confidence 3568999999998762 33359999999999999999999999999876543
No 61
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.77 E-value=4.7e-09 Score=79.08 Aligned_cols=49 Identities=20% Similarity=0.555 Sum_probs=41.4
Q ss_pred CCCCCcCCCCCCCcccccCCccc-ccHHHHHHHhhcCCCCCCCCCCCCccCeeeCcc
Q 019860 277 RTICPLCSQKRANPSVVTVSGFV-FCYACIFKYVSQYKRCPVTLMPATVEQIRRLFH 332 (334)
Q Consensus 277 ~~~CpiC~~~~~~p~~~~~~G~v-fC~~Ci~~~~~~~~~CPv~~~~~~~~~l~ri~~ 332 (334)
...|+||++...+|+.++ |||+ ||..|+. ...+||+|+.+++ +.++||.
T Consensus 25 ~~~C~IC~~~~~~~~~~p-CgH~~~C~~C~~----~~~~CP~Cr~~i~--~~~~i~~ 74 (75)
T 2ecg_A 25 EKLCKICMDRNIAIVFVP-CGHLVTCKQCAE----AVDKCPMCYTVIT--FKQKIFM 74 (75)
T ss_dssp HHSCSSSCSSCCCBCCSS-SCCCCBCHHHHH----HCSBCTTTCCBCC--CCCBCCC
T ss_pred CCCCCcCCCCCCCEEEec-CCCHHHHHHHhh----CCCCCccCCceec--CcEEEec
Confidence 568999999999998887 9999 9999995 4589999998764 4677774
No 62
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.75 E-value=1.4e-08 Score=75.46 Aligned_cols=51 Identities=16% Similarity=0.395 Sum_probs=43.8
Q ss_pred CCCCCCcCCCCCCCcccccCCccc-ccHHHHHHHhhcCCCCCCCCCCCCccCeeeCccC
Q 019860 276 DRTICPLCSQKRANPSVVTVSGFV-FCYACIFKYVSQYKRCPVTLMPATVEQIRRLFHD 333 (334)
Q Consensus 276 ~~~~CpiC~~~~~~p~~~~~~G~v-fC~~Ci~~~~~~~~~CPv~~~~~~~~~l~ri~~~ 333 (334)
+...|+||++...+++.++ |||+ ||..|+.. ..+||+|+.++ .+.++||.+
T Consensus 14 ~~~~C~IC~~~~~~~v~~p-CgH~~~C~~C~~~----~~~CP~CR~~i--~~~~~i~~~ 65 (68)
T 2ea5_A 14 NSKDCVVCQNGTVNWVLLP-CRHTCLCDGCVKY----FQQCPMCRQFV--QESFALSGP 65 (68)
T ss_dssp CSSCCSSSSSSCCCCEETT-TTBCCSCTTHHHH----CSSCTTTCCCC--CCEECCCSS
T ss_pred CCCCCCCcCcCCCCEEEEC-CCChhhhHHHHhc----CCCCCCCCcch--hceEEeecC
Confidence 5678999999999998887 9999 99999984 58999999654 457888865
No 63
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.62 E-value=1.6e-08 Score=77.27 Aligned_cols=50 Identities=18% Similarity=0.584 Sum_probs=42.5
Q ss_pred CCCCCcCCCCCCCcccccCCccc-ccHHHHHHHhhcCCCCCCCCCCCCccCeeeCccC
Q 019860 277 RTICPLCSQKRANPSVVTVSGFV-FCYACIFKYVSQYKRCPVTLMPATVEQIRRLFHD 333 (334)
Q Consensus 277 ~~~CpiC~~~~~~p~~~~~~G~v-fC~~Ci~~~~~~~~~CPv~~~~~~~~~l~ri~~~ 333 (334)
...|+||++...+++.++ |||+ ||..|+..+ ..||+|+.+++ ..++||.+
T Consensus 18 ~~~C~IC~~~~~~~v~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~--~~~~i~~p 68 (79)
T 2yho_A 18 AMLCMVCCEEEINSTFCP-CGHTVCCESCAAQL----QSCPVCRSRVE--HVQHVYLP 68 (79)
T ss_dssp HTBCTTTSSSBCCEEEET-TCBCCBCHHHHTTC----SBCTTTCCBCC--EEEECBCT
T ss_pred CCEeEEeCcccCcEEEEC-CCCHHHHHHHHHhc----CcCCCCCchhh--CeEEEEeC
Confidence 568999999999998887 9999 999999866 49999997755 46788764
No 64
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.61 E-value=5.2e-09 Score=86.03 Aligned_cols=50 Identities=16% Similarity=0.428 Sum_probs=0.4
Q ss_pred CCCCCcCCCCCCCcc-----------------cccCCcccccHHHHHHHhhcCCCCCCCCCCCCccC
Q 019860 277 RTICPLCSQKRANPS-----------------VVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQ 326 (334)
Q Consensus 277 ~~~CpiC~~~~~~p~-----------------~~~~~G~vfC~~Ci~~~~~~~~~CPv~~~~~~~~~ 326 (334)
...|+||++.+.+++ +..+|||+||..||.+|++.+..||+|+.+...+.
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~~k 114 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQK 114 (117)
T ss_dssp C------------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeeeeec
Confidence 468999999998753 22359999999999999999999999998876544
No 65
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.43 E-value=3.9e-08 Score=77.06 Aligned_cols=55 Identities=20% Similarity=0.419 Sum_probs=43.6
Q ss_pred CCCCCCcCCCCCCCcccc--cCCcccccHHHHHHHhhc--------CCCCCC--CCCC--CCccCeeeC
Q 019860 276 DRTICPLCSQKRANPSVV--TVSGFVFCYACIFKYVSQ--------YKRCPV--TLMP--ATVEQIRRL 330 (334)
Q Consensus 276 ~~~~CpiC~~~~~~p~~~--~~~G~vfC~~Ci~~~~~~--------~~~CPv--~~~~--~~~~~l~ri 330 (334)
+...||||.+...+|.++ ..|||.||..|+.+|++. .-+||. |+.. ++.+++.++
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i~~l 72 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIECM 72 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHHHHH
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHHHHH
Confidence 456899999999888543 249999999999999974 237999 9998 776665544
No 66
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.39 E-value=6.8e-08 Score=93.23 Aligned_cols=50 Identities=20% Similarity=0.537 Sum_probs=42.9
Q ss_pred CCCCCCcCCCCCCCcccccCCccc-ccHHHHHHHhhcCCCCCCCCCCCCccCeeeCcc
Q 019860 276 DRTICPLCSQKRANPSVVTVSGFV-FCYACIFKYVSQYKRCPVTLMPATVEQIRRLFH 332 (334)
Q Consensus 276 ~~~~CpiC~~~~~~p~~~~~~G~v-fC~~Ci~~~~~~~~~CPv~~~~~~~~~l~ri~~ 332 (334)
+...|+||++...+|+.++ |||+ ||..|+..| ..||+|+.++ ...++||.
T Consensus 294 ~~~~C~IC~~~~~~~v~lp-CgH~~fC~~C~~~~----~~CP~CR~~i--~~~~~i~~ 344 (345)
T 3t6p_A 294 EERTCKVCMDKEVSVVFIP-CGHLVVCQECAPSL----RKCPICRGII--KGTVRTFL 344 (345)
T ss_dssp TTCBCTTTSSSBCCEEEET-TCCEEECTTTGGGC----SBCTTTCCBC--CEEEECC-
T ss_pred CCCCCCccCCcCCceEEcC-CCChhHhHHHHhcC----CcCCCCCCCc--cCeEEeec
Confidence 4678999999999999987 9999 999999977 7999999765 46678774
No 67
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.33 E-value=2.4e-07 Score=73.38 Aligned_cols=44 Identities=25% Similarity=0.515 Sum_probs=38.2
Q ss_pred CCCcCCCCCCCc-ccccCCcccccHHHHHHHhhc-CCCCCCCCCCCC
Q 019860 279 ICPLCSQKRANP-SVVTVSGFVFCYACIFKYVSQ-YKRCPVTLMPAT 323 (334)
Q Consensus 279 ~CpiC~~~~~~p-~~~~~~G~vfC~~Ci~~~~~~-~~~CPv~~~~~~ 323 (334)
.|++|.-++..= .+++ |+|||||.|+..|.++ .+.||.|+.++.
T Consensus 3 fC~~C~~Pi~iygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCSEEEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred ecCccCCCeEEEeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence 699999999774 5776 9999999999999865 699999998864
No 68
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.25 E-value=6.9e-07 Score=68.38 Aligned_cols=51 Identities=16% Similarity=0.430 Sum_probs=40.8
Q ss_pred CCCCCCCcCCCCC--CCcccccCCc-----ccccHHHHHHHhhcCC--CCCCCCCCCCccC
Q 019860 275 PDRTICPLCSQKR--ANPSVVTVSG-----FVFCYACIFKYVSQYK--RCPVTLMPATVEQ 326 (334)
Q Consensus 275 ~~~~~CpiC~~~~--~~p~~~~~~G-----~vfC~~Ci~~~~~~~~--~CPv~~~~~~~~~ 326 (334)
.+...|+||++.. .++.+++ |+ |.|...||.+|+..++ .||+|+.+...+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCCCeEcCccccCCCeeEec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 3567899999876 3455554 85 9999999999999864 8999999886554
No 69
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.16 E-value=2.4e-06 Score=64.52 Aligned_cols=50 Identities=22% Similarity=0.424 Sum_probs=42.8
Q ss_pred CCCCCCCCcCCCCCCCcccccCCcccccHHHHHHHhhcC--CCCCCCCCCCC
Q 019860 274 PPDRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQY--KRCPVTLMPAT 323 (334)
Q Consensus 274 ~~~~~~CpiC~~~~~~p~~~~~~G~vfC~~Ci~~~~~~~--~~CPv~~~~~~ 323 (334)
+++...|.||...+..-..+.+|||.|-..||.+|++.+ .+||+|+.+..
T Consensus 12 ~~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 12 PDAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SSSSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred cCCCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 344678999999998666676799999999999999988 89999998764
No 70
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=97.58 E-value=3.3e-05 Score=82.68 Aligned_cols=54 Identities=19% Similarity=0.267 Sum_probs=50.0
Q ss_pred CCCCCCCcCCCCCCCcccccCCc-ccccHHHHHHHhhcCCCCCCCCCCCCccCeee
Q 019860 275 PDRTICPLCSQKRANPSVVTVSG-FVFCYACIFKYVSQYKRCPVTLMPATVEQIRR 329 (334)
Q Consensus 275 ~~~~~CpiC~~~~~~p~~~~~~G-~vfC~~Ci~~~~~~~~~CPv~~~~~~~~~l~r 329 (334)
++...|||.++.++||++++ +| ++|...+|.+|+..++.||+|+.|++.++|+.
T Consensus 889 P~~F~cPIs~~lM~DPVilp-sG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~liP 943 (968)
T 3m62_A 889 PDEFLDPLMYTIMKDPVILP-ASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTP 943 (968)
T ss_dssp CGGGBCTTTCSBCSSEEECT-TTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEE
T ss_pred cHHhCCcchhhHHhCCeEcC-CCCEEECHHHHHHHHhcCCCCCCCCCCCCcccccc
Confidence 47899999999999999997 76 79999999999999999999999999988875
No 71
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.12 E-value=0.00019 Score=68.75 Aligned_cols=48 Identities=15% Similarity=0.378 Sum_probs=38.6
Q ss_pred CCCCCCcCCCCCCC----c-ccc--cCCcccccHHHHHHHhhcC-----------CCCCCCCCCCC
Q 019860 276 DRTICPLCSQKRAN----P-SVV--TVSGFVFCYACIFKYVSQY-----------KRCPVTLMPAT 323 (334)
Q Consensus 276 ~~~~CpiC~~~~~~----p-~~~--~~~G~vfC~~Ci~~~~~~~-----------~~CPv~~~~~~ 323 (334)
....|+||...+.+ | .+| ++|||.|-..|+++|++.. +.||.|+.+++
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 45689999998766 3 123 3699999999999999853 68999999875
No 72
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=96.66 E-value=0.0013 Score=47.16 Aligned_cols=48 Identities=15% Similarity=0.354 Sum_probs=36.5
Q ss_pred CCCCCCcCCCCCCCcccccCCc--c---cccHHHHHHHhhc--CCCCCCCCCCCCc
Q 019860 276 DRTICPLCSQKRANPSVVTVSG--F---VFCYACIFKYVSQ--YKRCPVTLMPATV 324 (334)
Q Consensus 276 ~~~~CpiC~~~~~~p~~~~~~G--~---vfC~~Ci~~~~~~--~~~CPv~~~~~~~ 324 (334)
+...|.||+....++-+.+ |. + .|-..|+.+|+.. +..||+|+.+..+
T Consensus 5 ~~~~CrIC~~~~~~~l~~P-C~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRA-CGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp SCCEETTTTEECSCCCCCS-CCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCEeEEeecCCCCceecC-cCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 4568999998766665443 43 3 7889999999975 5789999987653
No 73
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=96.58 E-value=0.0022 Score=58.52 Aligned_cols=49 Identities=22% Similarity=0.400 Sum_probs=41.9
Q ss_pred CCCCCcCCCCCCCcccccCCcccccHHHHHHHhhcCC--CCCCCCCCCCcc
Q 019860 277 RTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYK--RCPVTLMPATVE 325 (334)
Q Consensus 277 ~~~CpiC~~~~~~p~~~~~~G~vfC~~Ci~~~~~~~~--~CPv~~~~~~~~ 325 (334)
-..|.+|.+.+.-...|+.||+.|-..|+.+|++.++ +||.|+.+-..+
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 3479999999987778888999999999999998764 999999875433
No 74
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=94.18 E-value=0.12 Score=39.16 Aligned_cols=35 Identities=17% Similarity=0.589 Sum_probs=28.7
Q ss_pred CCCCCcCCCCCCCcc--cc-cCCcccccHHHHHHHhhc
Q 019860 277 RTICPLCSQKRANPS--VV-TVSGFVFCYACIFKYVSQ 311 (334)
Q Consensus 277 ~~~CpiC~~~~~~p~--~~-~~~G~vfC~~Ci~~~~~~ 311 (334)
...|.+|.+.++|.- -+ ++.+|-||++|-.++++.
T Consensus 15 ~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 15 PLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp SCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred eeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 458999999999873 22 247999999999999984
No 75
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=92.84 E-value=0.081 Score=51.08 Aligned_cols=52 Identities=19% Similarity=0.401 Sum_probs=41.2
Q ss_pred CCCCCcCCCCCCCcccccCCcccccHHH--HHHHhhc--CCCCCCCCCCCCccCee
Q 019860 277 RTICPLCSQKRANPSVVTVSGFVFCYAC--IFKYVSQ--YKRCPVTLMPATVEQIR 328 (334)
Q Consensus 277 ~~~CpiC~~~~~~p~~~~~~G~vfC~~C--i~~~~~~--~~~CPv~~~~~~~~~l~ 328 (334)
...|||....|+.|+=-..|-|+-|++- +.+..++ .-+||||++.+..++|+
T Consensus 249 SL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ 304 (371)
T 3i2d_A 249 SLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLA 304 (371)
T ss_dssp ESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEE
T ss_pred eecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHee
Confidence 5689999999999986666999977765 4444443 35899999999988876
No 76
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=92.14 E-value=0.11 Score=49.89 Aligned_cols=52 Identities=19% Similarity=0.364 Sum_probs=40.7
Q ss_pred CCCCCcCCCCCCCcccccCCcccccHHH--HHHHhhc--CCCCCCCCCCCCccCee
Q 019860 277 RTICPLCSQKRANPSVVTVSGFVFCYAC--IFKYVSQ--YKRCPVTLMPATVEQIR 328 (334)
Q Consensus 277 ~~~CpiC~~~~~~p~~~~~~G~vfC~~C--i~~~~~~--~~~CPv~~~~~~~~~l~ 328 (334)
...||+....++.|+=-..|-|+-|++- ..+..++ .-+||||++.+..++|+
T Consensus 215 SL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ 270 (360)
T 4fo9_A 215 SLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLI 270 (360)
T ss_dssp ESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEE
T ss_pred eeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeE
Confidence 5689999999999986666999977654 3333333 36899999999988876
No 77
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=91.34 E-value=0.13 Score=39.85 Aligned_cols=31 Identities=16% Similarity=0.600 Sum_probs=24.1
Q ss_pred CCCCCcCCCC-CCCccc-ccCCcccccHHHHHH
Q 019860 277 RTICPLCSQK-RANPSV-VTVSGFVFCYACIFK 307 (334)
Q Consensus 277 ~~~CpiC~~~-~~~p~~-~~~~G~vfC~~Ci~~ 307 (334)
...|+||.+. .++|+. +..|||-||..|+..
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~ 35 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKA 35 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHH
Confidence 4689999976 455554 134999999999998
No 78
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=90.78 E-value=0.029 Score=53.01 Aligned_cols=46 Identities=20% Similarity=0.496 Sum_probs=36.7
Q ss_pred CCCCCCcCCCCCCCccccc---CCc--ccccHHHHHHHhhcCCCCCCCCCC
Q 019860 276 DRTICPLCSQKRANPSVVT---VSG--FVFCYACIFKYVSQYKRCPVTLMP 321 (334)
Q Consensus 276 ~~~~CpiC~~~~~~p~~~~---~~G--~vfC~~Ci~~~~~~~~~CPv~~~~ 321 (334)
..+.||+|+....-..+.. ..| |.+|--|-.+|--...+||.|+..
T Consensus 181 ~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 181 SRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred cCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 4679999999876554431 255 799999999999989999999965
No 79
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=90.23 E-value=0.12 Score=40.25 Aligned_cols=45 Identities=24% Similarity=0.569 Sum_probs=38.1
Q ss_pred CCCCCcCCCCCCCcccccCCcccccHHHHHHHhhcCCCCCCCCCCCC
Q 019860 277 RTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPAT 323 (334)
Q Consensus 277 ~~~CpiC~~~~~~p~~~~~~G~vfC~~Ci~~~~~~~~~CPv~~~~~~ 323 (334)
..-|-.|-..-++= +..+-|..|..|+..-+....+||+|++++-
T Consensus 28 ~~nCKsCWf~~k~L--V~C~dHYLCl~CLtlmL~~SdrCpIC~~pLP 72 (99)
T 2ko5_A 28 PQFCKSCWFENKGL--VECNNHYLCLNCLTLLLSVSNRCPICKMPLP 72 (99)
T ss_dssp CCCCCSSCSCCSSE--EECSSCEEEHHHHHHTCSSSSEETTTTEECC
T ss_pred cccChhhccccCCe--eeecchhhHHHHHHHHHhhccCCcccCCcCC
Confidence 56799998877654 4458999999999999999999999998763
No 80
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=88.26 E-value=0.12 Score=54.46 Aligned_cols=52 Identities=25% Similarity=0.472 Sum_probs=42.8
Q ss_pred CCCCCCCCCCcCCCCCCCc---------ccccCCc--------------------ccccHHHHHHHhhc--------CCC
Q 019860 272 PLPPDRTICPLCSQKRANP---------SVVTVSG--------------------FVFCYACIFKYVSQ--------YKR 314 (334)
Q Consensus 272 ~~~~~~~~CpiC~~~~~~p---------~~~~~~G--------------------~vfC~~Ci~~~~~~--------~~~ 314 (334)
.+|+|..+|+-|++.+.|| +-|+.|| +.+|-.|..+|-.. -..
T Consensus 106 ~i~pD~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp~a 185 (761)
T 3vth_A 106 PVSPDMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVA 185 (761)
T ss_dssp CCCCCBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTTCC
T ss_pred ccCCCccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCCCc
Confidence 4677899999999999988 3577798 78899999999863 357
Q ss_pred CCCCCCCCC
Q 019860 315 CPVTLMPAT 323 (334)
Q Consensus 315 CPv~~~~~~ 323 (334)
||.||-.+.
T Consensus 186 C~~CGP~l~ 194 (761)
T 3vth_A 186 CFDCGPSLS 194 (761)
T ss_dssp CTTTSCCEE
T ss_pred CCccCCeeE
Confidence 999997653
No 81
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=87.24 E-value=0.76 Score=35.36 Aligned_cols=47 Identities=17% Similarity=0.364 Sum_probs=35.9
Q ss_pred CCCCCcCCCCCCC-----c-ccccCCcccccHHHHHHHhhc-CCCCCCCCCCCC
Q 019860 277 RTICPLCSQKRAN-----P-SVVTVSGFVFCYACIFKYVSQ-YKRCPVTLMPAT 323 (334)
Q Consensus 277 ~~~CpiC~~~~~~-----p-~~~~~~G~vfC~~Ci~~~~~~-~~~CPv~~~~~~ 323 (334)
..+|-||+..+-- + +++..|++-.|.+|..--.++ ++.||-|+.+-+
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 4589999998522 2 577789999999998755543 688999987654
No 82
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=86.37 E-value=0.04 Score=43.14 Aligned_cols=41 Identities=22% Similarity=0.381 Sum_probs=31.9
Q ss_pred CCCCCcCCCCCCCcccccCCcccccHHHHHHHhhcCCCCCCCCCCCC
Q 019860 277 RTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPAT 323 (334)
Q Consensus 277 ~~~CpiC~~~~~~p~~~~~~G~vfC~~Ci~~~~~~~~~CPv~~~~~~ 323 (334)
...||.|.++++- ..|+.+|-.|-.+|. ....||-|+.++.
T Consensus 32 ~~~CP~Cq~eL~~-----~g~~~hC~~C~~~f~-~~a~CPdC~q~Le 72 (101)
T 2jne_A 32 ELHCPQCQHVLDQ-----DNGHARCRSCGEFIE-MKALCPDCHQPLQ 72 (101)
T ss_dssp CCBCSSSCSBEEE-----ETTEEEETTTCCEEE-EEEECTTTCSBCE
T ss_pred cccCccCCCccee-----cCCEEECccccchhh-ccccCcchhhHHH
Confidence 3689999998752 267777999987644 4589999999875
No 83
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=86.34 E-value=0.48 Score=37.97 Aligned_cols=52 Identities=13% Similarity=0.177 Sum_probs=41.1
Q ss_pred CCCCCcCCCCCCC--cccccCCcccccHHHHHHHhhcCCCCCCCCCCCCccCee
Q 019860 277 RTICPLCSQKRAN--PSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQIR 328 (334)
Q Consensus 277 ~~~CpiC~~~~~~--p~~~~~~G~vfC~~Ci~~~~~~~~~CPv~~~~~~~~~l~ 328 (334)
-..|..|.+++.+ ......-|.+||..|-.+-....++|-.|+.+++..+++
T Consensus 32 CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~~~~ 85 (122)
T 1m3v_A 32 CLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSGGDVM 85 (122)
T ss_dssp HHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCCEESS
T ss_pred CCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCchheE
Confidence 3589999999973 233345999999999998887777999999998765553
No 84
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=82.65 E-value=0.38 Score=50.82 Aligned_cols=52 Identities=33% Similarity=0.588 Sum_probs=41.4
Q ss_pred CCCCCCCCCCcCCCCCCCc---------ccccCCc--------------------ccccHHHHHHHhhc--------CCC
Q 019860 272 PLPPDRTICPLCSQKRANP---------SVVTVSG--------------------FVFCYACIFKYVSQ--------YKR 314 (334)
Q Consensus 272 ~~~~~~~~CpiC~~~~~~p---------~~~~~~G--------------------~vfC~~Ci~~~~~~--------~~~ 314 (334)
.+|+|..+|+-|++.+.|| +-|+.|| +.+|-.|..+|-.. -..
T Consensus 101 ~i~pD~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfhAqp~a 180 (772)
T 4g9i_A 101 IIPPDIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYHAEPTA 180 (772)
T ss_dssp CCCCCCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTTCTTCC
T ss_pred ccCCchhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCcCCCCC
Confidence 3678999999999999888 3566687 56799999999853 358
Q ss_pred CCCCCCCCC
Q 019860 315 CPVTLMPAT 323 (334)
Q Consensus 315 CPv~~~~~~ 323 (334)
||.||-.+.
T Consensus 181 C~~CGP~l~ 189 (772)
T 4g9i_A 181 CPVCGPSYR 189 (772)
T ss_dssp CTTTSCCEE
T ss_pred CccCCceEE
Confidence 999997653
No 85
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=81.80 E-value=0.43 Score=49.45 Aligned_cols=50 Identities=30% Similarity=0.535 Sum_probs=37.2
Q ss_pred CCCCCCCCCcCCCCCCCc---------ccccCCc--------------------ccccHHHHHHHhhc--------CCCC
Q 019860 273 LPPDRTICPLCSQKRANP---------SVVTVSG--------------------FVFCYACIFKYVSQ--------YKRC 315 (334)
Q Consensus 273 ~~~~~~~CpiC~~~~~~p---------~~~~~~G--------------------~vfC~~Ci~~~~~~--------~~~C 315 (334)
+|+|..+|+-|++.+.|| +-|+.|| +.+|-.|..+|-.. -..|
T Consensus 13 i~pD~a~C~~Cl~e~~dp~~Rry~YpF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfHAqp~aC 92 (657)
T 3ttc_A 13 IVPDAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDPLDRRFHAQPVAC 92 (657)
T ss_dssp CCCCBCCCHHHHHHHTSTTSTTTTCTTCCBTTBBCSGGGBSSSSCSGGGBGGGGSCCCHHHHHHHHCTTSTTTTCTTCCC
T ss_pred cCCchhhhHHHHHHhcCCCCcccCCccccCcCCCchHHhcccCCCCCCCCcccCCCCChHHHHHhCCCCCCcCcCCCCcC
Confidence 344677788888877776 2455566 67899999999863 3689
Q ss_pred CCCCCCC
Q 019860 316 PVTLMPA 322 (334)
Q Consensus 316 Pv~~~~~ 322 (334)
|.||-.+
T Consensus 93 p~CGP~l 99 (657)
T 3ttc_A 93 PECGPYL 99 (657)
T ss_dssp TTTSCCE
T ss_pred cccCccc
Confidence 9999766
No 86
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=81.62 E-value=0.15 Score=38.68 Aligned_cols=41 Identities=24% Similarity=0.536 Sum_probs=30.7
Q ss_pred CCCCcCCCCCCCcccccCCcccccHHHHHHHhhcCCCCCCCCCCCCc
Q 019860 278 TICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATV 324 (334)
Q Consensus 278 ~~CpiC~~~~~~p~~~~~~G~vfC~~Ci~~~~~~~~~CPv~~~~~~~ 324 (334)
..||.|..++.- ..|+.+|-.|-.++-.+- .||-|+.++.+
T Consensus 3 ~~CP~C~~~l~~-----~~~~~~C~~C~~~~~~~a-fCPeCgq~Le~ 43 (81)
T 2jrp_A 3 ITCPVCHHALER-----NGDTAHCETCAKDFSLQA-LCPDCRQPLQV 43 (81)
T ss_dssp CCCSSSCSCCEE-----CSSEEECTTTCCEEEEEE-ECSSSCSCCCE
T ss_pred CCCCCCCCcccc-----CCCceECccccccCCCcc-cCcchhhHHHH
Confidence 579999988742 256777888888766554 99999988753
No 87
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=80.88 E-value=0.48 Score=33.68 Aligned_cols=36 Identities=19% Similarity=0.495 Sum_probs=26.8
Q ss_pred CCCCCCcCCCCCCCc-----ccccC--CcccccHHHHHHHhhc
Q 019860 276 DRTICPLCSQKRANP-----SVVTV--SGFVFCYACIFKYVSQ 311 (334)
Q Consensus 276 ~~~~CpiC~~~~~~p-----~~~~~--~G~vfC~~Ci~~~~~~ 311 (334)
....||-|+..|+-. ..+.. ||+.|||.|...|-..
T Consensus 5 ~~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 5 NTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred cceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 356799999987644 34544 8999999998887643
No 88
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=80.58 E-value=0.51 Score=40.57 Aligned_cols=10 Identities=40% Similarity=0.783 Sum_probs=7.5
Q ss_pred CCCCCCCCCC
Q 019860 313 KRCPVTLMPA 322 (334)
Q Consensus 313 ~~CPv~~~~~ 322 (334)
..||+|+.|-
T Consensus 154 ~~CP~Cg~~~ 163 (170)
T 3pwf_A 154 EYCPVCGAPK 163 (170)
T ss_dssp SBCTTTCCBG
T ss_pred CCCCCCCCCH
Confidence 4899998653
No 89
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=79.12 E-value=0.42 Score=37.96 Aligned_cols=30 Identities=27% Similarity=0.423 Sum_probs=20.3
Q ss_pred CCCcccccCCcccccHHHHHHHhhcCCCCCCCCCC
Q 019860 287 RANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMP 321 (334)
Q Consensus 287 ~~~p~~~~~~G~vfC~~Ci~~~~~~~~~CPv~~~~ 321 (334)
+..|..|..|||+|+ +-+....+||.|+..
T Consensus 64 ~v~p~~C~~CG~~F~-----~~~~kPsrCP~CkSe 93 (105)
T 2gmg_A 64 LIKPAQCRKCGFVFK-----AEINIPSRCPKCKSE 93 (105)
T ss_dssp EECCCBBTTTCCBCC-----CCSSCCSSCSSSCCC
T ss_pred EEECcChhhCcCeec-----ccCCCCCCCcCCCCC
Confidence 344556666999982 334456899999854
No 90
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=78.98 E-value=0.3 Score=36.68 Aligned_cols=37 Identities=27% Similarity=0.663 Sum_probs=24.9
Q ss_pred CCCCCc--CCCCCC-----Cccccc-----CCcccccHHHHHHHhhcCCCC
Q 019860 277 RTICPL--CSQKRA-----NPSVVT-----VSGFVFCYACIFKYVSQYKRC 315 (334)
Q Consensus 277 ~~~Cpi--C~~~~~-----~p~~~~-----~~G~vfC~~Ci~~~~~~~~~C 315 (334)
..-||- |...+. ..+.++ .||+.||+.|-..|=. ..|
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH~--~~C 73 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHE--GEC 73 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECCS--SCS
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccccC--Ccc
Confidence 345776 776653 235664 5999999999877644 445
No 91
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=78.23 E-value=3 Score=31.78 Aligned_cols=50 Identities=20% Similarity=0.371 Sum_probs=35.9
Q ss_pred CCCCCCcCCCCCC--CcccccCCcccccHHHHHHHhhcCCCCCCCCCCCCccCeee
Q 019860 276 DRTICPLCSQKRA--NPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQIRR 329 (334)
Q Consensus 276 ~~~~CpiC~~~~~--~p~~~~~~G~vfC~~Ci~~~~~~~~~CPv~~~~~~~~~l~r 329 (334)
....|..|.+.+. ++-.+. ||.+||-. ++|- ++..|+..-+....+.|.+
T Consensus 24 ~~~rC~~C~kkvgl~~~f~Cr-Cg~~FC~~--HRy~-e~H~C~fDyK~~gr~~iak 75 (85)
T 1wff_A 24 IMKHCFLCGKKTGLATSFECR-CGNNFCAS--HRYA-EAHGCNYDYKSAGRRYLEE 75 (85)
T ss_dssp CCCBCSSSCCBCSSSSCEECT-TCCEECTT--TCST-GGGTCCSCCSSSCCCCCCC
T ss_pred cCccchhhCCeecccCCeEcC-CCCEeccc--CCCc-cCCCCcchhhHHHHHHHHH
Confidence 4679999999754 487887 99999975 3333 4467888777666666543
No 92
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=78.19 E-value=0.56 Score=35.52 Aligned_cols=34 Identities=21% Similarity=0.351 Sum_probs=24.8
Q ss_pred CCCcCCCCCCC-----cccccCCcccccHHHHHHHhhcC
Q 019860 279 ICPLCSQKRAN-----PSVVTVSGFVFCYACIFKYVSQY 312 (334)
Q Consensus 279 ~CpiC~~~~~~-----p~~~~~~G~vfC~~Ci~~~~~~~ 312 (334)
-||-|...+.. .+.++.||+.||+.|-..|=++|
T Consensus 27 wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w~~~H 65 (86)
T 2ct7_A 27 WCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQWEEQH 65 (86)
T ss_dssp CCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBCCTTT
T ss_pred ECcCCCchheecCCCCceEeCCCCCccccccCCchhhcC
Confidence 38888875421 25676799999999988775555
No 93
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=77.00 E-value=1.7 Score=34.77 Aligned_cols=49 Identities=16% Similarity=0.190 Sum_probs=38.7
Q ss_pred CCCCCCcCCCCCCC---cccccCCcccccHHHHHHHhhcCCCCCCCCCCCCcc
Q 019860 276 DRTICPLCSQKRAN---PSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVE 325 (334)
Q Consensus 276 ~~~~CpiC~~~~~~---p~~~~~~G~vfC~~Ci~~~~~~~~~CPv~~~~~~~~ 325 (334)
+-..|..|.+++.+ +-.. .-|.+||.+|-.+-....++|..|+.++...
T Consensus 28 ~CF~C~~C~~~L~~~~~~~~~-~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~~ 79 (131)
T 2xjy_A 28 DCLSCDLCGCRLGEVGRRLYY-KLGRKLCRRDYLRLFGQDGLCASCDKRIRAY 79 (131)
T ss_dssp TTCBCTTTCCBCSSTTCCEEE-ETTEEECHHHHHHHHCCCEECTTTCCEECTT
T ss_pred HHcccCcCCCccccCCCeEEE-ECCEEeecCchhhhCCCccChhhcCCccCcc
Confidence 46789999999953 3344 4999999999988766556999999988653
No 94
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=72.98 E-value=3.5 Score=32.64 Aligned_cols=48 Identities=21% Similarity=0.211 Sum_probs=37.6
Q ss_pred CCCCCCcCCCCCCCcccccCCcccccHHHHHHHhhcCCCCCCCCCCCCcc
Q 019860 276 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVE 325 (334)
Q Consensus 276 ~~~~CpiC~~~~~~p~~~~~~G~vfC~~Ci~~~~~~~~~CPv~~~~~~~~ 325 (334)
+-..|..|.+++.+......-|..||..|-.+-. ..+|..|++++..+
T Consensus 29 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~--~~~C~~C~~~I~~~ 76 (126)
T 2xqn_T 29 KHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNH--AVVCQGCHNAIDPE 76 (126)
T ss_dssp GGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHS--CCBCTTTCSBCCTT
T ss_pred CCCCcCCCCCCCCcCEEEeECCEEechHHhCcCc--CccCcccCCcCCcC
Confidence 3578999999998755434599999999986533 46899999998754
No 95
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=72.70 E-value=10 Score=28.05 Aligned_cols=41 Identities=12% Similarity=0.163 Sum_probs=27.7
Q ss_pred CCCCCCcCCCCCCCcccccCCcccccHHHHHHHhhcCCCCCCCCCCCCcc
Q 019860 276 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVE 325 (334)
Q Consensus 276 ~~~~CpiC~~~~~~p~~~~~~G~vfC~~Ci~~~~~~~~~CPv~~~~~~~~ 325 (334)
....|..|.+.|.+..+. .-|.+|-..| -+|-.|+.++...
T Consensus 24 ~~~~C~~C~~~I~~~~~~-a~~~~~H~~C--------F~C~~C~~~L~~~ 64 (89)
T 1x64_A 24 RMPLCDKCGSGIVGAVVK-ARDKYRHPEC--------FVCADCNLNLKQK 64 (89)
T ss_dssp SCCBCTTTCCBCCSCCEE-SSSCEECTTT--------CCCSSSCCCTTTS
T ss_pred cCCCcccCCCEecccEEE-ECCceECccC--------CEecCCCCCCCCC
Confidence 456899999999875543 3666655444 4577788777643
No 96
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=72.49 E-value=2.1 Score=38.13 Aligned_cols=33 Identities=27% Similarity=0.510 Sum_probs=24.3
Q ss_pred CCCCCCcCCCCCCCc---ccccCCcccccHHHHHHH
Q 019860 276 DRTICPLCSQKRANP---SVVTVSGFVFCYACIFKY 308 (334)
Q Consensus 276 ~~~~CpiC~~~~~~p---~~~~~~G~vfC~~Ci~~~ 308 (334)
+...|.+|.+...-- --|..||.|||..|-...
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 345899999876421 346679999999997654
No 97
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=72.39 E-value=0.9 Score=39.58 Aligned_cols=10 Identities=30% Similarity=0.746 Sum_probs=7.6
Q ss_pred CCCCCCCCCC
Q 019860 313 KRCPVTLMPA 322 (334)
Q Consensus 313 ~~CPv~~~~~ 322 (334)
.+||+|+.+-
T Consensus 172 ~~CP~C~~~k 181 (191)
T 1lko_A 172 ELCPACAHPK 181 (191)
T ss_dssp SBCTTTCCBG
T ss_pred CCCCCCcCCH
Confidence 3899999763
No 98
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=72.05 E-value=1.2 Score=38.23 Aligned_cols=50 Identities=14% Similarity=0.317 Sum_probs=38.4
Q ss_pred CCCCCCcCCCCCCC---cccccCCcccccHHHHHHHhhcCCCCCCCCCCCCccC
Q 019860 276 DRTICPLCSQKRAN---PSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQ 326 (334)
Q Consensus 276 ~~~~CpiC~~~~~~---p~~~~~~G~vfC~~Ci~~~~~~~~~CPv~~~~~~~~~ 326 (334)
+-..|..|.+.+.+ .... .-|.+||..|-.+-.....+|..|++++...+
T Consensus 31 ~CF~C~~C~~~L~~~g~~~~~-~~g~~yC~~cy~~~~~~~~~C~~C~~~I~~~e 83 (188)
T 1rut_X 31 RCLKCSSCQAQLGDIGTSSYT-KSGMILCRNDYIRLFGNSGACSACGQSIPASE 83 (188)
T ss_dssp GGCBCTTTCCBHHHHCSEEEE-ETTEEECHHHHHHHHSCCEECTTTCCEECTTS
T ss_pred cCcccCCCCcccccCCceEEE-eCCccccccccccccccCCccccCCCccccCc
Confidence 35789999999875 4444 48999999998876654458999999886533
No 99
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=71.61 E-value=4.2 Score=30.76 Aligned_cols=53 Identities=17% Similarity=0.299 Sum_probs=39.0
Q ss_pred CCCCCCcCCCCCCCcccccCCcccccHHHHHHHhhcCCCCCCCCCCCCcc-CeeeC
Q 019860 276 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVE-QIRRL 330 (334)
Q Consensus 276 ~~~~CpiC~~~~~~p~~~~~~G~vfC~~Ci~~~~~~~~~CPv~~~~~~~~-~l~ri 330 (334)
+-..|..|.+++.+......-|.+||..|-.+- -..+|..|++++... ..++.
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~--~~~~C~~C~~~I~~~~~~~~a 85 (101)
T 2cup_A 32 TCFRCAKCLHPLANETFVAKDNKILCNKCTTRE--DSPKCKGCFKAIVAGDQNVEY 85 (101)
T ss_dssp TTCCCSSSCCCTTSSCCEEETTEEECHHHHTTC--CCCBCSSSCCBCCSSSCEEES
T ss_pred cCCcccccCCCCCcCeeECcCCEEEChhHhhhh--cCCccccCCCccccCCeEEEe
Confidence 357899999999876544459999999996432 236999999998754 44543
No 100
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.17 E-value=2.1 Score=31.19 Aligned_cols=46 Identities=22% Similarity=0.423 Sum_probs=31.3
Q ss_pred CCCCCCcCCCCCCCc----ccccCCcccccHHHHHHHhhcCCCCCCCCCCCCcc
Q 019860 276 DRTICPLCSQKRANP----SVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVE 325 (334)
Q Consensus 276 ~~~~CpiC~~~~~~p----~~~~~~G~vfC~~Ci~~~~~~~~~CPv~~~~~~~~ 325 (334)
....|..|.+.+.-+ -.+. ||.+||-. ++|- +...|+..-+.+..+
T Consensus 14 ~~~rC~~C~kk~gL~~~egf~Cr-Cg~~FC~~--HRy~-e~H~C~fDyk~~gr~ 63 (67)
T 1x4w_A 14 SRRRCFQCQTKLELVQQELGSCR-CGYVFCML--HRLP-EQHDCTFDHMGRGSG 63 (67)
T ss_dssp CTTBCSSSCCBCCHHHHHHHCCS-SSCCCCTT--TCST-GGGTCSSCSSCSSCC
T ss_pred cCCcchhhCCeecccccCceEec-CCCEehhc--cCCc-cccCCcccccccccc
Confidence 457899999998766 4675 99999974 3333 334577766655443
No 101
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=70.18 E-value=1.4 Score=38.88 Aligned_cols=10 Identities=30% Similarity=1.102 Sum_probs=7.9
Q ss_pred CCCCCCCCCC
Q 019860 313 KRCPVTLMPA 322 (334)
Q Consensus 313 ~~CPv~~~~~ 322 (334)
..||+|+.+-
T Consensus 187 ~~CP~C~~~k 196 (202)
T 1yuz_A 187 EKCPICFRPK 196 (202)
T ss_dssp SBCTTTCCBG
T ss_pred CCCCCCCCCh
Confidence 6899999763
No 102
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=69.99 E-value=0.79 Score=28.98 Aligned_cols=17 Identities=24% Similarity=0.587 Sum_probs=14.4
Q ss_pred CCCCCcCCCCCCCcccc
Q 019860 277 RTICPLCSQKRANPSVV 293 (334)
Q Consensus 277 ~~~CpiC~~~~~~p~~~ 293 (334)
..+||+|++.+.++-.+
T Consensus 5 GFiCP~C~~~l~s~~~L 21 (34)
T 3mjh_B 5 GFICPQCMKSLGSADEL 21 (34)
T ss_dssp EEECTTTCCEESSHHHH
T ss_pred ccCCcHHHHHcCCHHHH
Confidence 46899999999998665
No 103
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=69.94 E-value=1.9 Score=35.04 Aligned_cols=32 Identities=22% Similarity=0.412 Sum_probs=24.2
Q ss_pred CCCCCcCCCCCCCc---ccccCCcccccHHHHHHH
Q 019860 277 RTICPLCSQKRANP---SVVTVSGFVFCYACIFKY 308 (334)
Q Consensus 277 ~~~CpiC~~~~~~p---~~~~~~G~vfC~~Ci~~~ 308 (334)
...|.+|...+.-- --+..||.|||..|....
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 45899999986422 345669999999997654
No 104
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=69.51 E-value=2.2 Score=30.29 Aligned_cols=41 Identities=27% Similarity=0.597 Sum_probs=32.0
Q ss_pred CCCCcCCCCCCCcc--cccCCcccccHHHHHHHhhcC-CCCCCCC
Q 019860 278 TICPLCSQKRANPS--VVTVSGFVFCYACIFKYVSQY-KRCPVTL 319 (334)
Q Consensus 278 ~~CpiC~~~~~~p~--~~~~~G~vfC~~Ci~~~~~~~-~~CPv~~ 319 (334)
..|--|...+.+.. .++.|+.+||..|=. |+-+. +.||.|.
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~-fiHe~Lh~CPgC~ 59 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDV-FVHDSLHSCPGCI 59 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHH-TTTTTSCSSSTTC
T ss_pred CcccccCcccCCCccEECCccCcCcccchhH-HHHhhccCCcCCC
Confidence 35999999987654 477899999999976 55444 8999883
No 105
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=69.37 E-value=2.5 Score=32.16 Aligned_cols=34 Identities=21% Similarity=0.237 Sum_probs=24.7
Q ss_pred CCCCCCCcCCCCCCCc---ccccCCcccccHHHHHHH
Q 019860 275 PDRTICPLCSQKRANP---SVVTVSGFVFCYACIFKY 308 (334)
Q Consensus 275 ~~~~~CpiC~~~~~~p---~~~~~~G~vfC~~Ci~~~ 308 (334)
.+...|.+|...+.-- --+..||.|||..|....
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 43 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFS 43 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEE
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCc
Confidence 3566899999976432 245569999999997643
No 106
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=68.83 E-value=3.7 Score=36.23 Aligned_cols=32 Identities=25% Similarity=0.447 Sum_probs=23.7
Q ss_pred CCCCCcCCCCCCCc---ccccCCcccccHHHHHHH
Q 019860 277 RTICPLCSQKRANP---SVVTVSGFVFCYACIFKY 308 (334)
Q Consensus 277 ~~~CpiC~~~~~~p---~~~~~~G~vfC~~Ci~~~ 308 (334)
...|++|.....-- -=|..||.|||..|....
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 46899999976421 245669999999997644
No 107
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=68.48 E-value=6.2 Score=33.05 Aligned_cols=49 Identities=18% Similarity=0.295 Sum_probs=38.6
Q ss_pred CCCCCCcCCCCCCCcccccCCcccccHHHHHHHhhcCCCCCCCCCCCCccCe
Q 019860 276 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQI 327 (334)
Q Consensus 276 ~~~~CpiC~~~~~~p~~~~~~G~vfC~~Ci~~~~~~~~~CPv~~~~~~~~~l 327 (334)
+-..|..|.+++.+.... .-|.+||..|-.+-. ..+|..|+.++...++
T Consensus 32 ~CF~C~~C~~~L~~~~f~-~~g~~yC~~~y~~~f--~~~C~~C~~~I~~~~~ 80 (169)
T 2rgt_A 32 KCLKCSDCHVPLAERCFS-RGESVYCKDDFFKRF--GTKCAACQLGIPPTQV 80 (169)
T ss_dssp TTSBCTTTCCBCCSCCEE-SSSCEECHHHHHHHH--SCBCTTTCCBCCTTSE
T ss_pred ccCccCCCCCcCCCCCcc-cCCeeeecccccccc--cccccccccccCCCcE
Confidence 467899999999887654 599999999987644 3689999998876543
No 108
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=65.92 E-value=3 Score=31.17 Aligned_cols=33 Identities=21% Similarity=0.497 Sum_probs=24.4
Q ss_pred CCCCCCcCCCCCCCc---ccccCCcccccHHHHHHH
Q 019860 276 DRTICPLCSQKRANP---SVVTVSGFVFCYACIFKY 308 (334)
Q Consensus 276 ~~~~CpiC~~~~~~p---~~~~~~G~vfC~~Ci~~~ 308 (334)
+...|.+|.....-- --+..||.|||..|....
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 345899999986532 245569999999998654
No 109
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=65.70 E-value=1.5 Score=29.58 Aligned_cols=10 Identities=30% Similarity=0.371 Sum_probs=7.6
Q ss_pred CCCCCCCCCC
Q 019860 312 YKRCPVTLMP 321 (334)
Q Consensus 312 ~~~CPv~~~~ 321 (334)
+=+||+|+.+
T Consensus 30 dw~CP~Cg~~ 39 (46)
T 6rxn_A 30 DWCCPVCGVS 39 (46)
T ss_dssp TCBCTTTCCB
T ss_pred CCcCcCCCCc
Confidence 3489999964
No 110
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.29 E-value=3.1 Score=31.15 Aligned_cols=32 Identities=22% Similarity=0.272 Sum_probs=23.5
Q ss_pred CCCCCcCCCCCCCc---ccccCCcccccHHHHHHH
Q 019860 277 RTICPLCSQKRANP---SVVTVSGFVFCYACIFKY 308 (334)
Q Consensus 277 ~~~CpiC~~~~~~p---~~~~~~G~vfC~~Ci~~~ 308 (334)
...|.+|.....-- -=+..||.|||..|....
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 48 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFK 48 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCEE
T ss_pred CCcCcCcCCccccchhhhhhcCCCcEEChhhcCCc
Confidence 45899999986432 245569999999996543
No 111
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=65.05 E-value=7.5 Score=28.76 Aligned_cols=48 Identities=19% Similarity=0.344 Sum_probs=33.2
Q ss_pred CCCCCCcCCCCCCC-cccccCCcccccHHHHHHHhhcCCCCCCCCCCCCccCe
Q 019860 276 DRTICPLCSQKRAN-PSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQI 327 (334)
Q Consensus 276 ~~~~CpiC~~~~~~-p~~~~~~G~vfC~~Ci~~~~~~~~~CPv~~~~~~~~~l 327 (334)
....|..|.+.+.- +-.+. ||.+||-. ++|- +...|+..-+.+..+.|
T Consensus 24 ~~~RC~~C~kkvgL~~f~Cr-Cg~~FCs~--HRy~-e~H~C~fDyk~~gr~~~ 72 (74)
T 1wfp_A 24 TATRCLSCNKKVGVTGFKCR-CGSTFCGT--HRYP-ESHECQFDFKGVASGPS 72 (74)
T ss_dssp CCCBCSSSCCBCTTTCEECT-TSCEECTT--TCST-TTSCCCSCTTSCCCCCC
T ss_pred cCccchhhcCcccccceEec-cCCEeccc--cCCC-cCCCCcCchhHHhHHhh
Confidence 45789999988655 45675 99999975 2333 44668887776655443
No 112
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=64.89 E-value=6.4 Score=33.35 Aligned_cols=48 Identities=19% Similarity=0.279 Sum_probs=36.6
Q ss_pred CCCCCCcCCCCCCCcccccCCcccccHHHHHHHhhcCCCCCCCCCCCCccC
Q 019860 276 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQ 326 (334)
Q Consensus 276 ~~~~CpiC~~~~~~p~~~~~~G~vfC~~Ci~~~~~~~~~CPv~~~~~~~~~ 326 (334)
+-..|..|.+++.+.... .-|..||..|-.+-. ..+|..|+.++...+
T Consensus 86 ~CF~C~~C~~~L~~~~f~-~~g~~yC~~~y~~~f--~~kC~~C~~~I~~~~ 133 (182)
T 2jtn_A 86 KCLKCSDCHVPLAERCFS-RGESVYCKDDFFKRF--GTKCAACQLGIPPTQ 133 (182)
T ss_dssp STTSCTTTCCCCSSCCEE-ETTEEECHHHHHHTT--SCCCTTTCCCCCSSC
T ss_pred ccCccCCCCCccCCCcee-ECCEeeecCcccccc--ccccccCCCccCCCc
Confidence 357899999998876554 489999999976543 368999998886544
No 113
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=64.70 E-value=3.3 Score=31.08 Aligned_cols=33 Identities=21% Similarity=0.410 Sum_probs=24.6
Q ss_pred CCCCCCcCCCCCCCc---ccccCCcccccHHHHHHH
Q 019860 276 DRTICPLCSQKRANP---SVVTVSGFVFCYACIFKY 308 (334)
Q Consensus 276 ~~~~CpiC~~~~~~p---~~~~~~G~vfC~~Ci~~~ 308 (334)
+...|.+|.....-- --+..||.|||..|....
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 456899999986422 345569999999997654
No 114
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=64.35 E-value=3.2 Score=33.58 Aligned_cols=42 Identities=19% Similarity=0.343 Sum_probs=27.1
Q ss_pred CCCCCcCCCCCCCc---ccccCCcccccHHHHHHHhhcCCCCCCC
Q 019860 277 RTICPLCSQKRANP---SVVTVSGFVFCYACIFKYVSQYKRCPVT 318 (334)
Q Consensus 277 ~~~CpiC~~~~~~p---~~~~~~G~vfC~~Ci~~~~~~~~~CPv~ 318 (334)
...|..|....+-- --+..||.+||..|....+.....|-.|
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C 63 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLC 63 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHH
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHH
Confidence 45799999987543 2456699999999976655444445444
No 115
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=63.27 E-value=3.2 Score=31.62 Aligned_cols=33 Identities=24% Similarity=0.371 Sum_probs=24.5
Q ss_pred CCCCCcCCCCCCC---cccccCCcccccHHHHHHHh
Q 019860 277 RTICPLCSQKRAN---PSVVTVSGFVFCYACIFKYV 309 (334)
Q Consensus 277 ~~~CpiC~~~~~~---p~~~~~~G~vfC~~Ci~~~~ 309 (334)
...|.+|.....- ---+..||.|||..|....+
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 5579999997642 13456699999999977544
No 116
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=62.57 E-value=7.2 Score=33.34 Aligned_cols=36 Identities=17% Similarity=0.430 Sum_probs=29.0
Q ss_pred CCCCCCcCCCCCCCcccccCCcccccHHHHHHHhhc
Q 019860 276 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQ 311 (334)
Q Consensus 276 ~~~~CpiC~~~~~~p~~~~~~G~vfC~~Ci~~~~~~ 311 (334)
+-..|..|.+++.+......-|.+||..|..+-...
T Consensus 33 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~ 68 (192)
T 1b8t_A 33 SCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGP 68 (192)
T ss_dssp TTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHSC
T ss_pred CCCcCcccCCcCCCCeeEecCCEeeChhhhHhhcCc
Confidence 467899999999887544458999999999887643
No 117
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=62.30 E-value=6.7 Score=28.24 Aligned_cols=48 Identities=17% Similarity=0.391 Sum_probs=32.4
Q ss_pred CCCCCCcCCCCCCC-cccccCCcccccHHHHHHHhhcCCCCCCCCCCCCccCe
Q 019860 276 DRTICPLCSQKRAN-PSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQI 327 (334)
Q Consensus 276 ~~~~CpiC~~~~~~-p~~~~~~G~vfC~~Ci~~~~~~~~~CPv~~~~~~~~~l 327 (334)
....|..|.+.+.- +-.+. ||.+||-.- +|- +...|+-.-+.+..+.|
T Consensus 14 ~~~rC~~C~kkvgl~~f~Cr-Cg~~FC~~H--Ry~-e~H~C~fDyk~~gr~~l 62 (64)
T 1wfh_A 14 RPNRCTVCRKRVGLTGFMCR-CGTTFCGSH--RYP-EVHGCTFDFKSAGSGPS 62 (64)
T ss_dssp SCCCCTTTCCCCCTTCEECS-SSCEECTTT--CST-TTTTCCCCCSCCCCSCC
T ss_pred cCCcChhhCCccCccCEEee-cCCEecccc--CCc-ccCCCCchhhHHHHHHh
Confidence 35689999998655 45675 999999752 333 44568877666555443
No 118
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=61.78 E-value=4.2 Score=29.61 Aligned_cols=30 Identities=27% Similarity=0.393 Sum_probs=22.5
Q ss_pred CCCCcCCCCCCCc---ccccCCcccccHHHHHH
Q 019860 278 TICPLCSQKRANP---SVVTVSGFVFCYACIFK 307 (334)
Q Consensus 278 ~~CpiC~~~~~~p---~~~~~~G~vfC~~Ci~~ 307 (334)
..|.+|.....-- --+..||.|||..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 4799999986432 24556999999999753
No 119
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=59.18 E-value=10 Score=28.04 Aligned_cols=43 Identities=21% Similarity=0.470 Sum_probs=28.6
Q ss_pred CCCCCCcCCCCCCC-cccccCCcccccHHHHHHHhhcCCCCCCCCCCC
Q 019860 276 DRTICPLCSQKRAN-PSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPA 322 (334)
Q Consensus 276 ~~~~CpiC~~~~~~-p~~~~~~G~vfC~~Ci~~~~~~~~~CPv~~~~~ 322 (334)
..+.|..|++.+.- +-.+. ||.+||-. ++|. +...|+-.-+..
T Consensus 24 ~~nRC~~CrKkvgL~gf~Cr-Cg~~FCs~--HRy~-e~H~C~fDyk~~ 67 (74)
T 1wfl_A 24 KKNRCFMCRKKVGLTGFDCR-CGNLFCGL--HRYS-DKHNCPYDYKAE 67 (74)
T ss_dssp CTTBCSSSCCBCGGGCEECT-TSCEECSS--SCST-TTTTCCCCGGGT
T ss_pred cCCcChhhCCcccccCeecC-CCCEechh--cCCC-ccCCCcchhhhh
Confidence 35789999998544 56687 99999964 2222 345676655443
No 120
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=58.10 E-value=1.9 Score=33.03 Aligned_cols=13 Identities=15% Similarity=0.171 Sum_probs=9.1
Q ss_pred hhcCCCCCCCCCC
Q 019860 309 VSQYKRCPVTLMP 321 (334)
Q Consensus 309 ~~~~~~CPv~~~~ 321 (334)
+.++-+||+|+.+
T Consensus 65 lPddW~CPvCga~ 77 (87)
T 1s24_A 65 IPDDWCCPDCGAT 77 (87)
T ss_dssp CCTTCCCSSSCCC
T ss_pred CCCCCCCCCCCCC
Confidence 3344589999964
No 121
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=57.75 E-value=8.5 Score=27.68 Aligned_cols=48 Identities=17% Similarity=0.326 Sum_probs=33.2
Q ss_pred CCCCCCcCCCCCCC-cccccCCcccccHHHHHHHhhcCCCCCCCCCCCCccCe
Q 019860 276 DRTICPLCSQKRAN-PSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQI 327 (334)
Q Consensus 276 ~~~~CpiC~~~~~~-p~~~~~~G~vfC~~Ci~~~~~~~~~CPv~~~~~~~~~l 327 (334)
....|..|.+.+.- +-.+. ||.+||-. ++|- +...|+-.-+.+..++|
T Consensus 14 ~~~rC~~C~kkvgl~~f~Cr-Cg~~FC~~--HR~~-e~H~C~fDyk~~gr~~~ 62 (64)
T 1wg2_A 14 PNNRCFSCNKKVGVMGFKCK-CGSTFCGS--HRYP-EKHECSFDFKEVGSGPS 62 (64)
T ss_dssp CSCSCTTTCCCCTTSCEECT-TSCEECSS--SCSS-TTTTCCCCCSCSCCCSC
T ss_pred cCCcChhhCCcccccCeEee-cCCEeccc--CCCc-cccCCCcchhHHhHHHh
Confidence 35689999998654 45675 99999975 2333 34568877776665554
No 122
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=56.02 E-value=2.1 Score=32.37 Aligned_cols=11 Identities=18% Similarity=0.163 Sum_probs=8.3
Q ss_pred cCCCCCCCCCC
Q 019860 311 QYKRCPVTLMP 321 (334)
Q Consensus 311 ~~~~CPv~~~~ 321 (334)
+.=+||+|+.+
T Consensus 59 ddW~CPvCga~ 69 (81)
T 2kn9_A 59 DDWSCPDCGAA 69 (81)
T ss_dssp TTCCCTTTCCC
T ss_pred CCCcCCCCCCC
Confidence 34589999965
No 123
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=55.84 E-value=14 Score=25.95 Aligned_cols=36 Identities=14% Similarity=0.404 Sum_probs=26.9
Q ss_pred CCCCCCcCCCCCCCcccccCCcccccHHHHHHHhhc
Q 019860 276 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQ 311 (334)
Q Consensus 276 ~~~~CpiC~~~~~~p~~~~~~G~vfC~~Ci~~~~~~ 311 (334)
+-..|..|.+.+.+......-|.+||..|..+-++.
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~~ 67 (72)
T 1x61_A 32 GCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLES 67 (72)
T ss_dssp TTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHHT
T ss_pred cCCcccccCCcCCcCcCEeeCCeEECHHHHHHHHcc
Confidence 457889999998765444458999999998776643
No 124
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=55.30 E-value=2.5 Score=40.68 Aligned_cols=33 Identities=15% Similarity=0.291 Sum_probs=0.0
Q ss_pred CCCCCcCCCCCCCc---ccccCCcccccHHHHHHHh
Q 019860 277 RTICPLCSQKRANP---SVVTVSGFVFCYACIFKYV 309 (334)
Q Consensus 277 ~~~CpiC~~~~~~p---~~~~~~G~vfC~~Ci~~~~ 309 (334)
...|.+|.....-- .-|..||.|||..|....+
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~ 410 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKY 410 (434)
T ss_dssp ------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCee
Confidence 45799999976422 3456699999999997654
No 125
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=53.05 E-value=2.9 Score=29.13 Aligned_cols=11 Identities=18% Similarity=0.087 Sum_probs=8.2
Q ss_pred cCCCCCCCCCC
Q 019860 311 QYKRCPVTLMP 321 (334)
Q Consensus 311 ~~~~CPv~~~~ 321 (334)
++=+||+|+.+
T Consensus 35 ~dw~CP~Cga~ 45 (55)
T 2v3b_B 35 ADWVCPDCGVG 45 (55)
T ss_dssp TTCCCTTTCCC
T ss_pred CCCcCCCCCCC
Confidence 44589999965
No 126
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=52.08 E-value=4.8 Score=29.33 Aligned_cols=13 Identities=31% Similarity=0.756 Sum_probs=10.2
Q ss_pred CCCCCCcCCCCCC
Q 019860 276 DRTICPLCSQKRA 288 (334)
Q Consensus 276 ~~~~CpiC~~~~~ 288 (334)
+-..||+|..+++
T Consensus 7 eiL~CP~ck~~L~ 19 (69)
T 2pk7_A 7 DILACPICKGPLK 19 (69)
T ss_dssp GTCCCTTTCCCCE
T ss_pred hheeCCCCCCcCe
Confidence 3457999999875
No 127
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.95 E-value=23 Score=25.77 Aligned_cols=41 Identities=22% Similarity=0.411 Sum_probs=24.1
Q ss_pred CCCCCcCCCCCCCcccccCCcccccHHHHHHHhhcCCCCCCCCCCCCcc
Q 019860 277 RTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVE 325 (334)
Q Consensus 277 ~~~CpiC~~~~~~p~~~~~~G~vfC~~Ci~~~~~~~~~CPv~~~~~~~~ 325 (334)
...|+.|++.|...-.+..-|.+|-..| -+|-.|+.+++..
T Consensus 15 ~~~C~~C~~~I~~~e~v~a~~~~wH~~C--------F~C~~C~~~L~~~ 55 (82)
T 2co8_A 15 GDLCALCGEHLYVLERLCVNGHFFHRSC--------FRCHTCEATLWPG 55 (82)
T ss_dssp SCBCSSSCCBCCTTTBCCBTTBCCBTTT--------CBCSSSCCBCCTT
T ss_pred CCCCcccCCCcccceEEEECCCeeCCCc--------CEEcCCCCCcCCC
Confidence 5689999999864322223565444333 3456677766543
No 128
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=50.47 E-value=4.1 Score=31.83 Aligned_cols=13 Identities=31% Similarity=0.342 Sum_probs=9.9
Q ss_pred CCCCCCCCCCCCc
Q 019860 312 YKRCPVTLMPATV 324 (334)
Q Consensus 312 ~~~CPv~~~~~~~ 324 (334)
.+.|||||.+++.
T Consensus 47 g~~CPvCgs~l~~ 59 (112)
T 1l8d_A 47 KGKCPVCGRELTD 59 (112)
T ss_dssp SEECTTTCCEECH
T ss_pred CCCCCCCCCcCCH
Confidence 4579999988764
No 129
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=49.27 E-value=10 Score=25.28 Aligned_cols=24 Identities=29% Similarity=0.803 Sum_probs=14.5
Q ss_pred CCCCCcCCC-CC-CCc----ccccCCcccc
Q 019860 277 RTICPLCSQ-KR-ANP----SVVTVSGFVF 300 (334)
Q Consensus 277 ~~~CpiC~~-~~-~~p----~~~~~~G~vf 300 (334)
...||.|+. .+ .|+ .+++.||.||
T Consensus 5 ~~~CP~C~~~~l~~d~~~gelvC~~CG~v~ 34 (50)
T 1pft_A 5 QKVCPACESAELIYDPERGEIVCAKCGYVI 34 (50)
T ss_dssp CCSCTTTSCCCEEEETTTTEEEESSSCCBC
T ss_pred cEeCcCCCCcceEEcCCCCeEECcccCCcc
Confidence 457999987 43 222 3555566655
No 130
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=49.21 E-value=4.9 Score=35.95 Aligned_cols=26 Identities=31% Similarity=0.843 Sum_probs=18.7
Q ss_pred CCCCCcCCCCCCCc-ccccCCcccccHHHH
Q 019860 277 RTICPLCSQKRANP-SVVTVSGFVFCYACI 305 (334)
Q Consensus 277 ~~~CpiC~~~~~~p-~~~~~~G~vfC~~Ci 305 (334)
+..||+|+.. +. .+-. .|+.+|..|-
T Consensus 14 ~~~CP~Cg~~--d~~~~~~-dg~~~C~~Cg 40 (255)
T 1nui_A 14 HIPCDNCGSS--DGNSLFS-DGHTFCYVCE 40 (255)
T ss_dssp EECCSSSCCS--SCEEEET-TSCEEETTTC
T ss_pred CCcCCCCCCC--CCceEeC-CCCeecccCC
Confidence 5689999985 22 2223 6889999995
No 131
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=49.17 E-value=19 Score=25.56 Aligned_cols=45 Identities=11% Similarity=0.121 Sum_probs=33.4
Q ss_pred CCCCCCcCCCCCCCcccccCCcccccH-HHHHHHhhcCCCCCCCCCCC
Q 019860 276 DRTICPLCSQKRANPSVVTVSGFVFCY-ACIFKYVSQYKRCPVTLMPA 322 (334)
Q Consensus 276 ~~~~CpiC~~~~~~p~~~~~~G~vfC~-~Ci~~~~~~~~~CPv~~~~~ 322 (334)
+-..|..|.+++.+......-|.+||. .|-.+-. ..+|-.|+..+
T Consensus 26 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f--~~~C~~C~~~~ 71 (76)
T 1iml_A 26 PCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMF--GPKGFGRGGAE 71 (76)
T ss_dssp TTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHS--SCCCSSCCCSS
T ss_pred CCCCccccCccCCCCceECcCCeEeeCHHHHHHHh--CccCCCcCCce
Confidence 457899999999875433459999999 6986543 35788888554
No 132
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation pathway, DE-ubiquitination, alternative splicing, metal-binding, thiol protease; NMR {Homo sapiens} SCOP: g.44.1.5
Probab=49.08 E-value=14 Score=28.51 Aligned_cols=35 Identities=14% Similarity=0.141 Sum_probs=25.9
Q ss_pred CCCCCcCCCCCCCcccccC--Cccccc----HHHHHHHhhc
Q 019860 277 RTICPLCSQKRANPSVVTV--SGFVFC----YACIFKYVSQ 311 (334)
Q Consensus 277 ~~~CpiC~~~~~~p~~~~~--~G~vfC----~~Ci~~~~~~ 311 (334)
...|..|+..-.|-=++-+ ||||+| ..-+.++.++
T Consensus 25 ~~~C~~C~~~~~~lw~CL~~~Cg~vgCgr~~~~Ha~~H~~~ 65 (97)
T 2uzg_A 25 LGTCQDCKVQGPNLWACLENRCSYVGCGESQVDHSTIHSQE 65 (97)
T ss_dssp TTCCSSSCCCCSSCEEECCTTCCCEECCTTTTCHHHHHHHH
T ss_pred CCcCcCcCCCCCCceeeecccCCCcccCCCcChHHHHHhhh
Confidence 4579999976666445556 999999 5666677665
No 133
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=48.54 E-value=3.3 Score=30.29 Aligned_cols=11 Identities=27% Similarity=0.507 Sum_probs=8.3
Q ss_pred cCCCCCCCCCC
Q 019860 311 QYKRCPVTLMP 321 (334)
Q Consensus 311 ~~~~CPv~~~~ 321 (334)
++=+||+|+.+
T Consensus 39 ddw~CP~Cga~ 49 (70)
T 1dx8_A 39 DSFMCPACRSP 49 (70)
T ss_dssp TTCBCTTTCCB
T ss_pred CCCcCCCCCCC
Confidence 44589999964
No 134
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.51 E-value=33 Score=24.38 Aligned_cols=45 Identities=16% Similarity=0.252 Sum_probs=32.3
Q ss_pred CCCCCCc--CCCCCCCcccccCCcccccHHHHHHHhhcCCCCCCCCCCCC
Q 019860 276 DRTICPL--CSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPAT 323 (334)
Q Consensus 276 ~~~~Cpi--C~~~~~~p~~~~~~G~vfC~~Ci~~~~~~~~~CPv~~~~~~ 323 (334)
....|.. |.+.-..|..+..||.+||-. ++ ..+...|+--..++.
T Consensus 11 ~~~~Cs~~~Ck~~~ll~f~C~~C~~~FC~~--HR-~~e~H~C~~~~~~~~ 57 (63)
T 1x4v_A 11 FTNKCERAGCRQREMMKLTCERCSRNFCIK--HR-HPLDHDCSGEGHPTS 57 (63)
T ss_dssp TCCCCCSTTCCCCCSSCCBCSSSCCBCCHH--HH-STTSSCCCSTTSCCC
T ss_pred cCCCCCccCCCCCCccceECCCCCcccCcc--cC-CccCCcCCCCCCccc
Confidence 3568999 999866688888899999963 33 455667876554443
No 135
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=46.27 E-value=3.8 Score=28.49 Aligned_cols=12 Identities=17% Similarity=0.252 Sum_probs=8.7
Q ss_pred hcCCCCCCCCCC
Q 019860 310 SQYKRCPVTLMP 321 (334)
Q Consensus 310 ~~~~~CPv~~~~ 321 (334)
-.+=+||+|+.+
T Consensus 34 P~dw~CP~Cg~~ 45 (54)
T 4rxn_A 34 PDDWVCPLCGVG 45 (54)
T ss_dssp CTTCBCTTTCCB
T ss_pred CCCCcCcCCCCc
Confidence 345589999964
No 136
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.55 E-value=18 Score=25.05 Aligned_cols=34 Identities=29% Similarity=0.619 Sum_probs=22.5
Q ss_pred CCCCCCcCCCCCCCcccccCCcccccHHHHHHHh
Q 019860 276 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYV 309 (334)
Q Consensus 276 ~~~~CpiC~~~~~~p~~~~~~G~vfC~~Ci~~~~ 309 (334)
+-..|..|.+++.+......-|.+||..|-.+.+
T Consensus 30 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f 63 (69)
T 2cur_A 30 DCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFV 63 (69)
T ss_dssp TTTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHH
T ss_pred CcCEECCCCCCCCCCccEeECCEEECHHHhHHHh
Confidence 3567778888776654433477888887776544
No 137
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=45.48 E-value=5.7 Score=28.86 Aligned_cols=13 Identities=31% Similarity=0.700 Sum_probs=10.0
Q ss_pred CCCCCcCCCCCCC
Q 019860 277 RTICPLCSQKRAN 289 (334)
Q Consensus 277 ~~~CpiC~~~~~~ 289 (334)
-..||+|..+++-
T Consensus 8 iL~CP~ck~~L~~ 20 (68)
T 2hf1_A 8 ILVCPLCKGPLVF 20 (68)
T ss_dssp ECBCTTTCCBCEE
T ss_pred heECCCCCCcCeE
Confidence 4579999998753
No 138
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=44.85 E-value=6.2 Score=27.96 Aligned_cols=22 Identities=23% Similarity=0.567 Sum_probs=16.4
Q ss_pred CCCCCcCCCCCCCcccccCCcc
Q 019860 277 RTICPLCSQKRANPSVVTVSGF 298 (334)
Q Consensus 277 ~~~CpiC~~~~~~p~~~~~~G~ 298 (334)
-..||-|++...--.|++.|||
T Consensus 30 l~~c~~cGe~~~~H~vc~~CG~ 51 (60)
T 3v2d_5 30 LVPCPECKAMKPPHTVCPECGY 51 (60)
T ss_dssp CEECTTTCCEECTTSCCTTTCE
T ss_pred eeECCCCCCeecceEEcCCCCc
Confidence 4579999997666677777775
No 139
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=44.76 E-value=7.7 Score=27.46 Aligned_cols=22 Identities=27% Similarity=0.644 Sum_probs=16.1
Q ss_pred CCCCCcCCCCCCCcccccCCcc
Q 019860 277 RTICPLCSQKRANPSVVTVSGF 298 (334)
Q Consensus 277 ~~~CpiC~~~~~~p~~~~~~G~ 298 (334)
-..||.|++...--.+++.|||
T Consensus 30 l~~c~~cG~~~~pH~vc~~CG~ 51 (60)
T 2zjr_Z 30 LTECPQCHGKKLSHHICPNCGY 51 (60)
T ss_dssp CEECTTTCCEECTTBCCTTTCB
T ss_pred ceECCCCCCEeCCceEcCCCCc
Confidence 4579999998655567777775
No 140
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.59 E-value=15 Score=25.67 Aligned_cols=34 Identities=24% Similarity=0.423 Sum_probs=21.7
Q ss_pred CCCCCCcCCCCCCCcccccCCcccccHHHHHHHh
Q 019860 276 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYV 309 (334)
Q Consensus 276 ~~~~CpiC~~~~~~p~~~~~~G~vfC~~Ci~~~~ 309 (334)
+-..|..|.+.+.+......-|.+||..|-.+-.
T Consensus 30 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~ 63 (70)
T 2d8x_A 30 ECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREK 63 (70)
T ss_dssp TTSBCSSSCCBCSSSCCEEETTEEECHHHHHHHH
T ss_pred cCCEeCCCCCcCCCCccEeECCeEECHHHhhhhc
Confidence 3567777777776654333477777777765544
No 141
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=43.91 E-value=4 Score=28.07 Aligned_cols=11 Identities=27% Similarity=0.471 Sum_probs=8.0
Q ss_pred cCCCCCCCCCC
Q 019860 311 QYKRCPVTLMP 321 (334)
Q Consensus 311 ~~~~CPv~~~~ 321 (334)
++=+||+|+.+
T Consensus 34 ~dw~CP~Cg~~ 44 (52)
T 1yk4_A 34 DDWVCPLCGAP 44 (52)
T ss_dssp TTCBCTTTCCB
T ss_pred CCCcCCCCCCC
Confidence 34489999964
No 142
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=43.53 E-value=20 Score=30.40 Aligned_cols=45 Identities=16% Similarity=0.233 Sum_probs=33.7
Q ss_pred CCCCCCcCCCCCCCcccccCCcccccHHHHHHHhhcCCCCCCCCCCC
Q 019860 276 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPA 322 (334)
Q Consensus 276 ~~~~CpiC~~~~~~p~~~~~~G~vfC~~Ci~~~~~~~~~CPv~~~~~ 322 (334)
+-..|..|.+.+.+......-|.+||..|..+.. ..+|-.|+.++
T Consensus 141 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f--~~kc~~C~~~~ 185 (192)
T 1b8t_A 141 SCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNF--GPKGFGFGQGA 185 (192)
T ss_dssp TTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHT--CCCCCCCCCCC
T ss_pred hcCCccccCCCCCCCcccccCCEEeCHHHHHHhc--CCcCCCCCCcc
Confidence 3568899998887654334589999999987654 35789999874
No 143
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A
Probab=42.92 E-value=15 Score=29.86 Aligned_cols=36 Identities=14% Similarity=0.236 Sum_probs=24.5
Q ss_pred CCCCCCcCCCCCCCcccccCCccccc----------HHHHHHHhhcC
Q 019860 276 DRTICPLCSQKRANPSVVTVSGFVFC----------YACIFKYVSQY 312 (334)
Q Consensus 276 ~~~~CpiC~~~~~~p~~~~~~G~vfC----------~~Ci~~~~~~~ 312 (334)
+...|..|+..- |--++-+||||.| ..-+.++.++.
T Consensus 33 ~~~~C~~C~~~~-~LwlCL~CG~vgCgr~~~~g~g~~~HA~~H~~~t 78 (129)
T 2g45_A 33 CGWKCSKCDMRE-NLWLNLTDGSILCGRRYFDGSGGNNHAVEHYRET 78 (129)
T ss_dssp CBCCCSSSSCCS-SEEEETTTCCEEECCBCTTSCBCCSHHHHHHHHH
T ss_pred CCCcCccccCcC-ceEEeccCCccccCccccCCCCcCcHHHHHhhhc
Confidence 445799998773 5445556999999 34566666653
No 144
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=42.76 E-value=5.2 Score=33.50 Aligned_cols=10 Identities=20% Similarity=0.212 Sum_probs=7.4
Q ss_pred CCCCCCCCCC
Q 019860 313 KRCPVTLMPA 322 (334)
Q Consensus 313 ~~CPv~~~~~ 322 (334)
..||.||.++
T Consensus 149 ~~Cp~CG~~~ 158 (165)
T 2lcq_A 149 GVCPDCGSKV 158 (165)
T ss_dssp GBCTTTCCBE
T ss_pred CcCCCCCCcc
Confidence 4788888763
No 145
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.61 E-value=16 Score=25.66 Aligned_cols=31 Identities=23% Similarity=0.336 Sum_probs=21.2
Q ss_pred CCCCCCcCCCCCCCcccccCCcccccHHHHH
Q 019860 276 DRTICPLCSQKRANPSVVTVSGFVFCYACIF 306 (334)
Q Consensus 276 ~~~~CpiC~~~~~~p~~~~~~G~vfC~~Ci~ 306 (334)
+-..|..|.+.+.+......-|.+||..|-.
T Consensus 34 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~ 64 (72)
T 1x4l_A 34 DCFNCKKCSLSLVGRGFLTERDDILCPDCGK 64 (72)
T ss_dssp TTCBCSSSCCBCTTSCCEECSSSEECHHHHH
T ss_pred ccCEeccCCCcCCCCccEeECCEEEChhHcC
Confidence 3567888888777654433478888887764
No 146
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=42.57 E-value=8.6 Score=27.89 Aligned_cols=14 Identities=21% Similarity=0.541 Sum_probs=10.8
Q ss_pred CCCCCCcCCCCCCC
Q 019860 276 DRTICPLCSQKRAN 289 (334)
Q Consensus 276 ~~~~CpiC~~~~~~ 289 (334)
+-..||+|..+++-
T Consensus 7 ~iL~CP~ck~~L~~ 20 (68)
T 2jr6_A 7 DILVCPVTKGRLEY 20 (68)
T ss_dssp CCCBCSSSCCBCEE
T ss_pred hheECCCCCCcCeE
Confidence 45689999998753
No 147
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.23 E-value=24 Score=25.39 Aligned_cols=30 Identities=20% Similarity=0.536 Sum_probs=19.8
Q ss_pred CCCCCCcCCCCCCCcccccCCcccccHHHHH
Q 019860 276 DRTICPLCSQKRANPSVVTVSGFVFCYACIF 306 (334)
Q Consensus 276 ~~~~CpiC~~~~~~p~~~~~~G~vfC~~Ci~ 306 (334)
+-..|..|.+++.+... ..-|.+||..|..
T Consensus 40 ~CF~C~~C~~~L~~~~f-~~~g~~yC~~cy~ 69 (79)
T 2cor_A 40 DHFNCANCGKELTADAR-ELKGELYCLPCHD 69 (79)
T ss_dssp TTSBCSSSCCBCCTTCE-EETTEEECHHHHH
T ss_pred CCCEeCCCCCccCCCCE-eECCEEeCHHHHH
Confidence 35677777777766544 3477777777743
No 148
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.04 E-value=21 Score=26.28 Aligned_cols=38 Identities=18% Similarity=0.283 Sum_probs=20.5
Q ss_pred CCCCCcCCCCCCCcccccCCcccccHHHHHHHhhcCCCCCCCCCCCC
Q 019860 277 RTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPAT 323 (334)
Q Consensus 277 ~~~CpiC~~~~~~p~~~~~~G~vfC~~Ci~~~~~~~~~CPv~~~~~~ 323 (334)
...|+.|.++|.+..+.. -|.+|...| -+|-.|+.++.
T Consensus 25 ~~~C~~C~~~I~~~~v~a-~~~~~H~~C--------F~C~~C~~~L~ 62 (90)
T 2dar_A 25 TPMCAHCNQVIRGPFLVA-LGKSWHPEE--------FNCAHCKNTMA 62 (90)
T ss_dssp CCBBSSSCCBCCSCEEEE-TTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCccCCCEecceEEEE-CCccccccC--------CccCCCCCCCC
Confidence 346777777666554433 555544433 34555665554
No 149
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=41.98 E-value=16 Score=24.97 Aligned_cols=9 Identities=33% Similarity=0.490 Sum_probs=5.4
Q ss_pred CCCCCCCCC
Q 019860 313 KRCPVTLMP 321 (334)
Q Consensus 313 ~~CPv~~~~ 321 (334)
=+||+|+.+
T Consensus 37 w~CP~Cg~~ 45 (52)
T 1e8j_A 37 WACPVCGAS 45 (52)
T ss_dssp CCCSSSCCC
T ss_pred CcCCCCCCc
Confidence 367777643
No 150
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=41.23 E-value=8.5 Score=33.71 Aligned_cols=29 Identities=14% Similarity=0.421 Sum_probs=23.5
Q ss_pred CCCCCcCCCCCCCc-ccccCCcccccHHHHH
Q 019860 277 RTICPLCSQKRANP-SVVTVSGFVFCYACIF 306 (334)
Q Consensus 277 ~~~CpiC~~~~~~p-~~~~~~G~vfC~~Ci~ 306 (334)
...|++|++.+-++ +++. -|-..|.+|..
T Consensus 172 ~~~C~~CGE~~~~~~~~~~-~g~~~C~~C~~ 201 (204)
T 2gvi_A 172 KVRCDVCGEYTYEADAKLL-NGKPVCKPDYY 201 (204)
T ss_dssp EEECTTTCCEEEGGGCEEE-TTEEECHHHHH
T ss_pred ceECCCCCCchhhcceeee-CCcEEChhhhc
Confidence 56899999987766 4444 89999999974
No 151
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=40.68 E-value=56 Score=23.70 Aligned_cols=48 Identities=10% Similarity=0.102 Sum_probs=28.8
Q ss_pred CCCCCCcCCCCCCCc---------------ccccCCcccccHH-HHHHHhhcC-----CCCCCCCCCCC
Q 019860 276 DRTICPLCSQKRANP---------------SVVTVSGFVFCYA-CIFKYVSQY-----KRCPVTLMPAT 323 (334)
Q Consensus 276 ~~~~CpiC~~~~~~p---------------~~~~~~G~vfC~~-Ci~~~~~~~-----~~CPv~~~~~~ 323 (334)
....|++|.+...+. -.+..||..|-.. -+..++..+ -.|++|++...
T Consensus 16 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 84 (106)
T 2ee8_A 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFC 84 (106)
T ss_dssp CCCBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSCCCCS
T ss_pred cCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCCCccchhCCHHHHHHHHHHhCCCCCeECCCcCCccc
Confidence 356899998876543 3445566666432 334444433 37888887653
No 152
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.64 E-value=21 Score=25.56 Aligned_cols=38 Identities=13% Similarity=0.128 Sum_probs=21.2
Q ss_pred CCCCCcCCCCCCCcccccCCcccccHHHHHHHhhcCCCCCCCCCCCC
Q 019860 277 RTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPAT 323 (334)
Q Consensus 277 ~~~CpiC~~~~~~p~~~~~~G~vfC~~Ci~~~~~~~~~CPv~~~~~~ 323 (334)
...|+-|.++|.+..+ ..-|.+|-..| -+|-.|+.++.
T Consensus 15 ~~~C~~C~~~I~~~~~-~a~~~~~H~~C--------F~C~~C~~~L~ 52 (79)
T 1x62_A 15 LPMCDKCGTGIVGVFV-KLRDRHRHPEC--------YVCTDCGTNLK 52 (79)
T ss_dssp CCCCSSSCCCCCSSCE-ECSSCEECTTT--------TSCSSSCCCHH
T ss_pred CCccccCCCCccCcEE-EECcceeCcCc--------CeeCCCCCCCC
Confidence 4567777777776533 33565444333 24556666553
No 153
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=40.58 E-value=19 Score=34.80 Aligned_cols=43 Identities=16% Similarity=0.461 Sum_probs=31.8
Q ss_pred CCCCCcCCCCCCCccccc--CCcccccHHHHHHHhh----------cCCCCCCCCC
Q 019860 277 RTICPLCSQKRANPSVVT--VSGFVFCYACIFKYVS----------QYKRCPVTLM 320 (334)
Q Consensus 277 ~~~CpiC~~~~~~p~~~~--~~G~vfC~~Ci~~~~~----------~~~~CPv~~~ 320 (334)
...|-+|.+.- +=..|. .|..+||..||...+- ..=.|=+|.-
T Consensus 93 ~~yCr~C~~Gg-~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 93 QSYCSICCSGE-TLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp BCSCTTTCCCS-SCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred cccceEcCCCC-eEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 45899999864 233455 6999999999999882 2347888873
No 154
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.88 E-value=19 Score=25.61 Aligned_cols=37 Identities=16% Similarity=0.222 Sum_probs=25.4
Q ss_pred CCCCCCcCCCCCC-CcccccCCcccccHHHHHHHhhcC
Q 019860 276 DRTICPLCSQKRA-NPSVVTVSGFVFCYACIFKYVSQY 312 (334)
Q Consensus 276 ~~~~CpiC~~~~~-~p~~~~~~G~vfC~~Ci~~~~~~~ 312 (334)
+-..|..|.+++. +......-|.+||..|-.+...+.
T Consensus 30 ~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~~~~ 67 (73)
T 1wig_A 30 SCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAARTED 67 (73)
T ss_dssp TTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHTSSSS
T ss_pred CcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHhhccc
Confidence 4578899999887 333223378899999987655443
No 155
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=38.80 E-value=13 Score=29.38 Aligned_cols=34 Identities=18% Similarity=0.281 Sum_probs=23.4
Q ss_pred CCCCCcCCCCCCCcccccCCccccc----HHHHHHHhhc
Q 019860 277 RTICPLCSQKRANPSVVTVSGFVFC----YACIFKYVSQ 311 (334)
Q Consensus 277 ~~~CpiC~~~~~~p~~~~~~G~vfC----~~Ci~~~~~~ 311 (334)
...|..|+..-..- ++-+||||+| ..-+.++.++
T Consensus 24 ~~~C~~C~~~~~~W-~CL~CG~vgCgr~~~~HA~~H~~~ 61 (109)
T 3c5k_A 24 TQPCGDCGTIQENW-VCLSCYQVYCGRYINGHMLQHHGN 61 (109)
T ss_dssp TCCCTTTCCCSSEE-EETTTCCEEECTTTTCHHHHHHHH
T ss_pred CCcCccccCCCCee-eeeecCccccCCCcChHHHHHhcc
Confidence 45799999875444 4445999999 3556666554
No 156
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=38.78 E-value=7.9 Score=32.97 Aligned_cols=24 Identities=29% Similarity=0.623 Sum_probs=17.5
Q ss_pred CCCCCCcCCCCCC--CcccccCCccc
Q 019860 276 DRTICPLCSQKRA--NPSVVTVSGFV 299 (334)
Q Consensus 276 ~~~~CpiC~~~~~--~p~~~~~~G~v 299 (334)
...+|++|+-... -|-+||+||+-
T Consensus 137 ~~~~C~~CG~i~~~~~p~~CP~Cg~~ 162 (170)
T 3pwf_A 137 KVYICPICGYTAVDEAPEYCPVCGAP 162 (170)
T ss_dssp CEEECTTTCCEEESCCCSBCTTTCCB
T ss_pred CeeEeCCCCCeeCCCCCCCCCCCCCC
Confidence 3568999998643 35688899973
No 157
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.50 E-value=26 Score=24.20 Aligned_cols=34 Identities=15% Similarity=0.577 Sum_probs=23.1
Q ss_pred CCCCCCcCCCCCCCcccccCCcccccHHHHHHHh
Q 019860 276 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYV 309 (334)
Q Consensus 276 ~~~~CpiC~~~~~~p~~~~~~G~vfC~~Ci~~~~ 309 (334)
+-..|..|.+++.+......-|.+||..|-.+-.
T Consensus 30 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f 63 (70)
T 2d8z_A 30 ECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLY 63 (70)
T ss_dssp TTSBCSSSCCBCTTSCCEESSSSEECHHHHHHHT
T ss_pred CCCccCCCCCcCCcCceEeeCCeEECHHHHHHHh
Confidence 3567888888886654333478888888876543
No 158
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=38.36 E-value=21 Score=24.50 Aligned_cols=31 Identities=13% Similarity=0.356 Sum_probs=18.8
Q ss_pred CCCCCcCCCCCCCcccccCCcccccHHHHHH
Q 019860 277 RTICPLCSQKRANPSVVTVSGFVFCYACIFK 307 (334)
Q Consensus 277 ~~~CpiC~~~~~~p~~~~~~G~vfC~~Ci~~ 307 (334)
-..|..|.+++.+......-|.+||..|-.+
T Consensus 31 CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~ 61 (66)
T 1nyp_A 31 HFVCAKCEKPFLGHRHYERKGLAYCETHYNQ 61 (66)
T ss_dssp TCBCTTTCCBCSSSCCEEETTEEECHHHHHH
T ss_pred cCEECCCCCCCCCCceEeECCcEECHHHHHH
Confidence 4567777777665433334677777777544
No 159
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=38.08 E-value=20 Score=21.54 Aligned_cols=26 Identities=19% Similarity=0.301 Sum_probs=17.2
Q ss_pred CCCCcCCCCCCCc-ccccCCcccccHHH
Q 019860 278 TICPLCSQKRANP-SVVTVSGFVFCYAC 304 (334)
Q Consensus 278 ~~CpiC~~~~~~p-~~~~~~G~vfC~~C 304 (334)
..||.|++.+--. .+. .-|.+|...|
T Consensus 4 ~~C~~C~k~Vy~~Ek~~-~~g~~~Hk~C 30 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVN-CLDKFWHKAC 30 (31)
T ss_dssp CBCSSSCSBCCGGGCCC-SSSSCCCGGG
T ss_pred CcCCccCCEEecceeEE-ECCeEecccC
Confidence 4799999987543 343 3677776665
No 160
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=37.90 E-value=14 Score=27.31 Aligned_cols=36 Identities=14% Similarity=0.321 Sum_probs=24.6
Q ss_pred CCCCCCcCCCCCCCcccccCCcccccHHHHHHHhhcC-----CCCCCCCCCCC
Q 019860 276 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQY-----KRCPVTLMPAT 323 (334)
Q Consensus 276 ~~~~CpiC~~~~~~p~~~~~~G~vfC~~Ci~~~~~~~-----~~CPv~~~~~~ 323 (334)
....|++|++.......+. .+++.+ -.|++|++...
T Consensus 27 ~~h~C~~Cgk~F~~~~~L~------------~H~~~H~~~k~~~C~~C~k~F~ 67 (85)
T 2lv2_A 27 ECHLCPVCGESFASKGAQE------------RHLRLLHAAQVFPCKYCPATFY 67 (85)
T ss_dssp TTEECTTSCCEESSHHHHH------------HHHHTTSCSSSEECTTSSCEES
T ss_pred CCEECCCCCCCcCcHHHHh------------hhhhhccCCCccCCCCCCCEeC
Confidence 4578999999888876543 233332 36999998754
No 161
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=37.87 E-value=24 Score=25.89 Aligned_cols=34 Identities=18% Similarity=0.296 Sum_probs=26.0
Q ss_pred CCCCCcCCCCCCCcccccCCcccccHHHHHHHhh
Q 019860 277 RTICPLCSQKRANPSVVTVSGFVFCYACIFKYVS 310 (334)
Q Consensus 277 ~~~CpiC~~~~~~p~~~~~~G~vfC~~Ci~~~~~ 310 (334)
-..|-.|.+.+.+-.....-|.+||..|..+-+.
T Consensus 51 CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~ 84 (89)
T 1x64_A 51 CFVCADCNLNLKQKGYFFVEGELYCETHARARTS 84 (89)
T ss_dssp TCCCSSSCCCTTTSCCEEETTEEECHHHHHHHSS
T ss_pred CCEecCCCCCCCCCCeEeECCEEECHHHHHHHhC
Confidence 4689999999987533334899999999876554
No 162
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.00 E-value=18 Score=25.18 Aligned_cols=34 Identities=24% Similarity=0.444 Sum_probs=24.0
Q ss_pred CCCCCCcCCCCCCCcccccCCcccccHHHHHHHh
Q 019860 276 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYV 309 (334)
Q Consensus 276 ~~~~CpiC~~~~~~p~~~~~~G~vfC~~Ci~~~~ 309 (334)
+-..|..|.+++.+......-|.+||..|..+-.
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f 65 (72)
T 1wyh_A 32 HCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKF 65 (72)
T ss_dssp TTCBCTTTCCBTTTSCEEEETTEEEEHHHHHHHT
T ss_pred ccCeECCCCCcCCCCccCCcCCeEECHHHHHHHc
Confidence 3567888888887754333488889888876543
No 163
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.61 E-value=29 Score=25.52 Aligned_cols=34 Identities=15% Similarity=0.382 Sum_probs=22.5
Q ss_pred CCCCCcCCCCCCCcccccCCcccccHHHHHHHhh
Q 019860 277 RTICPLCSQKRANPSVVTVSGFVFCYACIFKYVS 310 (334)
Q Consensus 277 ~~~CpiC~~~~~~p~~~~~~G~vfC~~Ci~~~~~ 310 (334)
-..|-.|.+.+.+-.....-|.+||..|..+-..
T Consensus 42 CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~ 75 (91)
T 2d8y_A 42 CFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFK 75 (91)
T ss_dssp TCBCTTTCCBCCTTTCCCSSSCCCCHHHHHHHSC
T ss_pred CCeeCCCCCCCCCCCcEeECCEEECHHHHHHHhC
Confidence 4677788877776533334788888888765443
No 164
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=36.38 E-value=16 Score=25.25 Aligned_cols=31 Identities=29% Similarity=0.664 Sum_probs=20.6
Q ss_pred CCCCCCcCCCCCCCcccccCCccccc-HHHHH
Q 019860 276 DRTICPLCSQKRANPSVVTVSGFVFC-YACIF 306 (334)
Q Consensus 276 ~~~~CpiC~~~~~~p~~~~~~G~vfC-~~Ci~ 306 (334)
+-..|..|.+++.+......-|.+|| .+|-.
T Consensus 31 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~~C~~ 62 (65)
T 2iyb_E 31 ECFLCSCCSKCLIGQKFMPVEGMVFCSVECKK 62 (65)
T ss_dssp TTSBCTTTCCBCTTSCCEEETTEEESSHHHHH
T ss_pred CCEECCCCCCcCCCCceEEECCEEecCHHHhh
Confidence 45677788877766543334778888 77754
No 165
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=35.99 E-value=49 Score=23.48 Aligned_cols=47 Identities=17% Similarity=0.258 Sum_probs=33.4
Q ss_pred CCCCCCCCcCCCCCCCcccccCCcccccHHHHHHHhhc----CCCCCCCCCC
Q 019860 274 PPDRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQ----YKRCPVTLMP 321 (334)
Q Consensus 274 ~~~~~~CpiC~~~~~~p~~~~~~G~vfC~~Ci~~~~~~----~~~CPv~~~~ 321 (334)
|.....|-+|++. .+-..+..|..+|-..|+.--+.. .=.||.|...
T Consensus 9 ~~~~~~C~vC~~~-~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 9 LAPGARCGVCGDG-TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp CCTTCCCTTTSCC-TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCCCcCCCCCC-CeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 3445679999874 233467779999999998655543 2479999743
No 166
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=35.88 E-value=17 Score=26.27 Aligned_cols=14 Identities=14% Similarity=0.161 Sum_probs=10.8
Q ss_pred CCCCCCcCCCCCCC
Q 019860 276 DRTICPLCSQKRAN 289 (334)
Q Consensus 276 ~~~~CpiC~~~~~~ 289 (334)
+-..||+|..+++-
T Consensus 9 eiL~CP~ck~~L~~ 22 (67)
T 2jny_A 9 EVLACPKDKGPLRY 22 (67)
T ss_dssp CCCBCTTTCCBCEE
T ss_pred HHhCCCCCCCcCeE
Confidence 45689999998754
No 167
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=35.78 E-value=12 Score=25.92 Aligned_cols=13 Identities=23% Similarity=0.626 Sum_probs=10.2
Q ss_pred CCCCCCcCCCCCC
Q 019860 276 DRTICPLCSQKRA 288 (334)
Q Consensus 276 ~~~~CpiC~~~~~ 288 (334)
+-..||+|+++++
T Consensus 9 ~iL~CP~c~~~L~ 21 (56)
T 2kpi_A 9 EILACPACHAPLE 21 (56)
T ss_dssp TSCCCSSSCSCEE
T ss_pred hheeCCCCCCcce
Confidence 4568999999864
No 168
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=35.59 E-value=14 Score=25.70 Aligned_cols=9 Identities=33% Similarity=0.748 Sum_probs=7.1
Q ss_pred CCCCCcCCC
Q 019860 277 RTICPLCSQ 285 (334)
Q Consensus 277 ~~~CpiC~~ 285 (334)
...||.|+.
T Consensus 11 ~~~Cp~C~~ 19 (58)
T 1dl6_A 11 RVTCPNHPD 19 (58)
T ss_dssp CCSBTTBSS
T ss_pred cccCcCCCC
Confidence 457999986
No 169
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=35.59 E-value=24 Score=26.73 Aligned_cols=39 Identities=13% Similarity=0.348 Sum_probs=29.0
Q ss_pred CCCCCCc--CCCCCCCcccccCCcccccHHHHHHHhhcCCCCCC
Q 019860 276 DRTICPL--CSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPV 317 (334)
Q Consensus 276 ~~~~Cpi--C~~~~~~p~~~~~~G~vfC~~Ci~~~~~~~~~CPv 317 (334)
....|.. |.+....|..+..||.+||-. ++ ..+...||-
T Consensus 24 ~~~~C~~~~Ck~~~~l~f~C~~C~~~FC~~--HR-~~e~H~C~~ 64 (86)
T 1wfe_A 24 KSYSCSFKGCTDVELVAVICPYCEKNFCLR--HR-HQSDHDCEK 64 (86)
T ss_dssp CCEECCSTTCCCEESSCEECTTTCCEECGG--GC-STGGGTCSS
T ss_pred CCCCCCCcCCCCCCccceECCCCCcccccc--cC-CccCCCCCC
Confidence 4568999 999877788898899999963 33 344466764
No 170
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=35.18 E-value=16 Score=34.72 Aligned_cols=40 Identities=13% Similarity=0.090 Sum_probs=26.6
Q ss_pred CCCCCCcCCCCCC----CcccccCCcccccHHHHHHHhhcCCCCCCCC
Q 019860 276 DRTICPLCSQKRA----NPSVVTVSGFVFCYACIFKYVSQYKRCPVTL 319 (334)
Q Consensus 276 ~~~~CpiC~~~~~----~p~~~~~~G~vfC~~Ci~~~~~~~~~CPv~~ 319 (334)
....|-.|++.+. ..--|..||+++|..|...-- .|+...
T Consensus 356 ~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~~~~----~C~~~~ 399 (406)
T 2vrw_B 356 ETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGRVP----PCGRHG 399 (406)
T ss_dssp SCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGGGSC----CC----
T ss_pred CCCCCccccchhceeCCCCCCCCCCcCccchhhhhhCC----CCCCCc
Confidence 3568999999774 234677899999999987332 276553
No 171
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.13 E-value=17 Score=26.09 Aligned_cols=36 Identities=17% Similarity=0.300 Sum_probs=27.4
Q ss_pred CCCCCCcCCCCCCCcccccCCcccccHHHHHHHhhc
Q 019860 276 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQ 311 (334)
Q Consensus 276 ~~~~CpiC~~~~~~p~~~~~~G~vfC~~Ci~~~~~~ 311 (334)
+-..|..|.+.+.+......-|.+||..|-.+-+..
T Consensus 40 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~p 75 (79)
T 1x62_A 40 ECYVCTDCGTNLKQKGHFFVEDQIYCEKHARERVSG 75 (79)
T ss_dssp TTTSCSSSCCCHHHHCCEESSSCEECHHHHHHHHSS
T ss_pred CcCeeCCCCCCCCCCCeEeECCEEECHHHHHHHhCC
Confidence 357899999999765433458999999998876654
No 172
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=34.44 E-value=17 Score=31.42 Aligned_cols=30 Identities=20% Similarity=0.318 Sum_probs=19.2
Q ss_pred CCCCCCcCCCC----CCCc----ccccCCcccccHHHH
Q 019860 276 DRTICPLCSQK----RANP----SVVTVSGFVFCYACI 305 (334)
Q Consensus 276 ~~~~CpiC~~~----~~~p----~~~~~~G~vfC~~Ci 305 (334)
....||.|+.. +.|. .||..||.|.--.-|
T Consensus 20 ~~~~CPECGs~~t~IV~D~erGE~VCsdCGLVLEEriI 57 (197)
T 3k1f_M 20 IVLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLV 57 (197)
T ss_dssp CCCCCTTTCCSSCCEEEEGGGTEEEETTTCBBCCCCCB
T ss_pred cCeECcCCCCcCCeEEEeCCCCEEEEcCCCCCcCCcee
Confidence 35689999982 3332 577778877654433
No 173
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=33.97 E-value=24 Score=24.98 Aligned_cols=29 Identities=31% Similarity=0.481 Sum_probs=15.0
Q ss_pred CCCCCcCCCCCCCcccccCCcccccHHHH
Q 019860 277 RTICPLCSQKRANPSVVTVSGFVFCYACI 305 (334)
Q Consensus 277 ~~~CpiC~~~~~~p~~~~~~G~vfC~~Ci 305 (334)
-..|..|.+.+.+......-|.+||..|-
T Consensus 46 CF~C~~C~~~L~~~~f~~~~~~~yC~~cy 74 (77)
T 2egq_A 46 CFHCKKCSVNLANKRFVFHQEQVYCPDCA 74 (77)
T ss_dssp TCBCSSSCCBCTTSCCCEETTEECCHHHH
T ss_pred cCEehhcCCCCCCCccEeECCEEEChHHh
Confidence 34556666665544322235666666554
No 174
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=33.49 E-value=12 Score=27.18 Aligned_cols=13 Identities=31% Similarity=0.925 Sum_probs=10.4
Q ss_pred CCCCCCcCCCCCC
Q 019860 276 DRTICPLCSQKRA 288 (334)
Q Consensus 276 ~~~~CpiC~~~~~ 288 (334)
+-..||+|..+++
T Consensus 7 ~iL~CP~ck~~L~ 19 (70)
T 2js4_A 7 DILVCPVCKGRLE 19 (70)
T ss_dssp CCCBCTTTCCBEE
T ss_pred hheECCCCCCcCE
Confidence 4568999999865
No 175
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.02 E-value=29 Score=24.04 Aligned_cols=32 Identities=28% Similarity=0.476 Sum_probs=20.2
Q ss_pred CCCCCcCCCCCCCcccccCCcccccHHHHHHH
Q 019860 277 RTICPLCSQKRANPSVVTVSGFVFCYACIFKY 308 (334)
Q Consensus 277 ~~~CpiC~~~~~~p~~~~~~G~vfC~~Ci~~~ 308 (334)
-..|..|.+.+.+......-|.+||..|..+-
T Consensus 33 CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~ 64 (72)
T 1x4k_A 33 CFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQ 64 (72)
T ss_dssp TTCCSSSCCCCCSSSEEEETTEEEEHHHHHHH
T ss_pred CCcccccCCccCCCccCccCCeEECHHHHhHH
Confidence 45677777777665433346777777776543
No 176
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.86 E-value=54 Score=23.97 Aligned_cols=34 Identities=24% Similarity=0.522 Sum_probs=26.9
Q ss_pred CCCCCCcCCCCCCCcccccCCcccccHHHHHHHh
Q 019860 276 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYV 309 (334)
Q Consensus 276 ~~~~CpiC~~~~~~p~~~~~~G~vfC~~Ci~~~~ 309 (334)
+-..|..|.+.+.+......-|.+||..|..+.+
T Consensus 50 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f 83 (90)
T 2dar_A 50 EEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFF 83 (90)
T ss_dssp TTCBCSSSCCBCSSSCBEESSSCEECHHHHHHHT
T ss_pred cCCccCCCCCCCCCCEeEeECCEEECHHHHHHHc
Confidence 3578999999998765444589999999987654
No 177
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=31.76 E-value=8.9 Score=22.52 Aligned_cols=10 Identities=40% Similarity=1.009 Sum_probs=5.2
Q ss_pred CCCCcCCCCC
Q 019860 278 TICPLCSQKR 287 (334)
Q Consensus 278 ~~CpiC~~~~ 287 (334)
..||+|.+.+
T Consensus 7 vqcpvcqq~m 16 (29)
T 3vhs_A 7 VQCPVCQQMM 16 (29)
T ss_dssp EECTTTCCEE
T ss_pred eeChHHHHhC
Confidence 3566665543
No 178
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=31.11 E-value=40 Score=22.66 Aligned_cols=28 Identities=21% Similarity=0.338 Sum_probs=17.6
Q ss_pred CCCCcCCCCCCCc--ccccCCcccccHHHHHHHhhcCCCCCCCCCCC
Q 019860 278 TICPLCSQKRANP--SVVTVSGFVFCYACIFKYVSQYKRCPVTLMPA 322 (334)
Q Consensus 278 ~~CpiC~~~~~~p--~~~~~~G~vfC~~Ci~~~~~~~~~CPv~~~~~ 322 (334)
+.|--|++.+.+. .+++ .-+||.||..+
T Consensus 4 Y~C~rCg~~fs~~el~~lP-----------------~IrCpyCGyri 33 (48)
T 4ayb_P 4 YRCGKCWKTFTDEQLKVLP-----------------GVRCPYCGYKI 33 (48)
T ss_dssp -CCCCTTTTCCCCCSCCCS-----------------SSCCTTTCCSC
T ss_pred EEeeccCCCccHHHHhhCC-----------------CcccCccCcEE
Confidence 4677777777665 2443 35888888654
No 179
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.07 E-value=38 Score=24.14 Aligned_cols=33 Identities=18% Similarity=0.295 Sum_probs=19.3
Q ss_pred CCCCCcCCCCCCCcccccCCcccccHHHHHHHh
Q 019860 277 RTICPLCSQKRANPSVVTVSGFVFCYACIFKYV 309 (334)
Q Consensus 277 ~~~CpiC~~~~~~p~~~~~~G~vfC~~Ci~~~~ 309 (334)
-..|..|.+++.+......-|.+||..|..+-.
T Consensus 43 CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f 75 (82)
T 1x63_A 43 CFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKF 75 (82)
T ss_dssp TCCCSSSCCCCTTSCEEEETTEEEEHHHHHHHT
T ss_pred cCchhhCCCccCCCccEeeCCEEECHHHHHHHh
Confidence 456677777666543223367777777665443
No 180
>1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=30.80 E-value=40 Score=24.80 Aligned_cols=45 Identities=18% Similarity=0.285 Sum_probs=31.8
Q ss_pred CCCCCCCCCc--CCCCCCCcccccCCcccccHHHHHHHhhcCCCCCCCCC
Q 019860 273 LPPDRTICPL--CSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLM 320 (334)
Q Consensus 273 ~~~~~~~Cpi--C~~~~~~p~~~~~~G~vfC~~Ci~~~~~~~~~CPv~~~ 320 (334)
.|+-...|.. |.+.---|..+..||.+||-. ....+...||--..
T Consensus 10 ~~~~g~~Cs~~~C~~~dflpf~C~~C~~~FC~~---HR~~e~H~C~~~~~ 56 (75)
T 1wys_A 10 ELDIGQHCQVQHCRQRDFLPFVCDGCSGIFCLE---HRSKDSHGCSEVNV 56 (75)
T ss_dssp CCCCCCCCSCTTTCCCSCCCEECTTTCCEECST---TCSSGGGTCCCCSS
T ss_pred ccccCCCcCcccCCCccceeeECcccCcCcCcc---cCCccccCCCCCcc
Confidence 4555778988 999866688888899999963 23334466775543
No 181
>4cpa_I Metallocarboxypeptidase inhibitor; hydrolase (C-terminal peptidase); 2.50A {Solanum tuberosum} SCOP: g.3.2.1 PDB: 1h20_A
Probab=30.68 E-value=12 Score=23.54 Aligned_cols=22 Identities=36% Similarity=0.798 Sum_probs=15.6
Q ss_pred CcCCCCCCCcccccCCcccccHHH
Q 019860 281 PLCSQKRANPSVVTVSGFVFCYAC 304 (334)
Q Consensus 281 piC~~~~~~p~~~~~~G~vfC~~C 304 (334)
|+|+++-...--+ +|--||-.|
T Consensus 6 ~~C~KPC~T~DDC--S~gw~CqaC 27 (38)
T 4cpa_I 6 PICNKPCKTHDDC--SGAWFCQAC 27 (38)
T ss_dssp TTTTCBCSSSSSS--CCCSSCCEE
T ss_pred cccCCCccCcccc--ccchHHHHH
Confidence 8888887665454 566788776
No 182
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.96 E-value=16 Score=26.04 Aligned_cols=28 Identities=25% Similarity=0.459 Sum_probs=15.1
Q ss_pred CCCCcCCCCCCCcccccCCcccccHHHH
Q 019860 278 TICPLCSQKRANPSVVTVSGFVFCYACI 305 (334)
Q Consensus 278 ~~CpiC~~~~~~p~~~~~~G~vfC~~Ci 305 (334)
..|..|.+.+.+......-|.+||..|.
T Consensus 36 F~C~~C~~~L~~~~f~~~~g~~yC~~cy 63 (76)
T 1x68_A 36 FNCGKCSVSLVGKGFLTQNKEIFCQKCG 63 (76)
T ss_dssp CBCTTTCCBCSSSCEEEETTEEEETTTT
T ss_pred CChhhCCCcCCCCceEeECCEEECHHHh
Confidence 4566666666544322235666666554
No 183
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=29.89 E-value=82 Score=24.13 Aligned_cols=40 Identities=15% Similarity=0.210 Sum_probs=29.8
Q ss_pred CCCCCCcCCCCCCC--cccccCCcccccHHHHHHHhhcCCCC
Q 019860 276 DRTICPLCSQKRAN--PSVVTVSGFVFCYACIFKYVSQYKRC 315 (334)
Q Consensus 276 ~~~~CpiC~~~~~~--p~~~~~~G~vfC~~Ci~~~~~~~~~C 315 (334)
+-..|..|.+++.+ ......-|.+||..|-.+-......|
T Consensus 29 ~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~~c~~ 70 (114)
T 1j2o_A 29 DCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGSGGHM 70 (114)
T ss_dssp TTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTSCCSS
T ss_pred hcCcccccCCchhcCCCeeEEECCeeechHHHHHHhCcccCc
Confidence 46789999999975 23334589999999998877665333
No 184
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.84 E-value=44 Score=23.66 Aligned_cols=34 Identities=18% Similarity=0.400 Sum_probs=22.2
Q ss_pred CCCCCCcCCCCCCCcccccCCcccccHHHHHHHh
Q 019860 276 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYV 309 (334)
Q Consensus 276 ~~~~CpiC~~~~~~p~~~~~~G~vfC~~Ci~~~~ 309 (334)
+-..|..|.+++.+......-|.+||..|..+-.
T Consensus 40 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f 73 (80)
T 2cuq_A 40 ECLVCTGCQTPLAGQQFTSRDEDPYCVACFGELF 73 (80)
T ss_dssp TTCBCSSSCCBCTTCCEEECSSSEEEHHHHHHHT
T ss_pred hhCCcccCCCcCCCCeeEeECCEEECHHHHHHHc
Confidence 3567788888776543333478888887776543
No 185
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=29.55 E-value=24 Score=24.19 Aligned_cols=40 Identities=10% Similarity=0.090 Sum_probs=24.3
Q ss_pred CCCCCCcCCCCCCCcccccCCcccccHHHHHHHhh-cCCCCCCCCCCCC
Q 019860 276 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVS-QYKRCPVTLMPAT 323 (334)
Q Consensus 276 ~~~~CpiC~~~~~~p~~~~~~G~vfC~~Ci~~~~~-~~~~CPv~~~~~~ 323 (334)
....|++|++.......+. -|+- .+-. ..-.|++|++...
T Consensus 16 ~~~~C~~C~k~f~~~~~l~--~H~~------~H~~~~~~~C~~C~k~f~ 56 (74)
T 2lce_A 16 KPYKCDRCQASFRYKGNLA--SHKT------VHTGEKPYRCNICGAQFN 56 (74)
T ss_dssp CSBCCTTSSCCBSCHHHHH--HHHH------HHCCCCSEECTTTCCEES
T ss_pred CCeECCCCCceeCCHHHHH--HHHH------HcCCCCCEECCCCCchhC
Confidence 4578999999988876543 2210 1111 1237999987653
No 186
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.97 E-value=43 Score=23.71 Aligned_cols=33 Identities=18% Similarity=0.308 Sum_probs=21.9
Q ss_pred CCCCCCcCCCCCCCcccccCCcccccHHHHHHH
Q 019860 276 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKY 308 (334)
Q Consensus 276 ~~~~CpiC~~~~~~p~~~~~~G~vfC~~Ci~~~ 308 (334)
+-..|..|.+++.+......-|.+||..|-.+-
T Consensus 40 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~~y~~~ 72 (80)
T 1x3h_A 40 ECFVCGDCFTSFSTGSFFELDGRPFCELHYHHR 72 (80)
T ss_dssp TTCBCSSSCCBSCSSCCEESSSCEECHHHHHHH
T ss_pred CcCChhhCCCCCCCCcEEeECCEEECHHHHHHH
Confidence 356778888887764333347888888776553
No 187
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=28.96 E-value=29 Score=36.81 Aligned_cols=37 Identities=14% Similarity=0.196 Sum_probs=26.5
Q ss_pred CCCCCCcCCCCCCCcccccCCcccccH----------HHHHHHhhcCC
Q 019860 276 DRTICPLCSQKRANPSVVTVSGFVFCY----------ACIFKYVSQYK 313 (334)
Q Consensus 276 ~~~~CpiC~~~~~~p~~~~~~G~vfC~----------~Ci~~~~~~~~ 313 (334)
....|..|+... |-=+|-+||||.|- ..+..+.++.+
T Consensus 214 ~~~~C~~c~~~~-~lw~CL~Cg~vgC~r~~~~~~~~~~ha~~H~~~~~ 260 (854)
T 3ihp_A 214 CGWKCSKCDMRE-NLWLNLTDGSILCGRRYFDGSGGNNHAVEHYRETG 260 (854)
T ss_dssp SCCCCSSSCCCS-SEEEETTTCCEEECCBC-CCCBCCSHHHHHHHHHC
T ss_pred CCCcCcCcCCcC-ceEEEecCCCccccccccCCCCCchHHHHHHhhcC
Confidence 346899999876 44455569999995 57777776544
No 188
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.58 E-value=30 Score=24.43 Aligned_cols=31 Identities=23% Similarity=0.410 Sum_probs=16.2
Q ss_pred CCCCCcCCCCCCCcccccCCcccccH-HHHHH
Q 019860 277 RTICPLCSQKRANPSVVTVSGFVFCY-ACIFK 307 (334)
Q Consensus 277 ~~~CpiC~~~~~~p~~~~~~G~vfC~-~Ci~~ 307 (334)
-..|..|.+++.+......-|.+||. +|-.+
T Consensus 36 CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~ 67 (76)
T 2cu8_A 36 CLKCERCSKTLTPGGHAEHDGKPFCHKPCYAT 67 (76)
T ss_dssp TCBCSSSCCBCCTTSCEEETTEEECTTTHHHH
T ss_pred CCCCCCCCCccCCCceEeECCEEecchHHHHH
Confidence 34566666666554322235666666 46543
No 189
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=28.19 E-value=11 Score=28.45 Aligned_cols=15 Identities=20% Similarity=0.601 Sum_probs=10.7
Q ss_pred CCCCCcCCCC-CCCcc
Q 019860 277 RTICPLCSQK-RANPS 291 (334)
Q Consensus 277 ~~~CpiC~~~-~~~p~ 291 (334)
...||-|+.. +.+|.
T Consensus 27 ~y~Cp~CG~~~v~r~a 42 (83)
T 1vq8_Z 27 DHACPNCGEDRVDRQG 42 (83)
T ss_dssp CEECSSSCCEEEEEEE
T ss_pred cCcCCCCCCcceeccC
Confidence 5689999984 44553
No 190
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.83 E-value=29 Score=24.45 Aligned_cols=31 Identities=16% Similarity=0.259 Sum_probs=18.9
Q ss_pred CCCCCcCCCCCCCcccccCCcccccHHHHHH
Q 019860 277 RTICPLCSQKRANPSVVTVSGFVFCYACIFK 307 (334)
Q Consensus 277 ~~~CpiC~~~~~~p~~~~~~G~vfC~~Ci~~ 307 (334)
-..|..|.+++.+......-|.+||..|..+
T Consensus 39 CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~ 69 (77)
T 1g47_A 39 CFVCAQCFQQFPEGLFYEFEGRKYCEHDFQM 69 (77)
T ss_dssp TCCCTTTCCCCGGGCSEEETTEEECHHHHHH
T ss_pred cCeECCCCCCCCCCCeEeECCeEeCHHHHHH
Confidence 4567777777765433234677777777643
No 191
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=27.70 E-value=22 Score=29.70 Aligned_cols=30 Identities=23% Similarity=0.451 Sum_probs=23.9
Q ss_pred CCCCCcCCCC---CCCc-ccccCCcccccHHHHH
Q 019860 277 RTICPLCSQK---RANP-SVVTVSGFVFCYACIF 306 (334)
Q Consensus 277 ~~~CpiC~~~---~~~p-~~~~~~G~vfC~~Ci~ 306 (334)
...|.+|.++ +.|. .+|..|.|-+|..|-.
T Consensus 68 ~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~ 101 (153)
T 2zet_C 68 ETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH 101 (153)
T ss_dssp GTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE
T ss_pred CccchhhcCccccccCCCCcCCCCCchhhccccc
Confidence 5689999997 3444 5777899999999983
No 192
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=27.14 E-value=26 Score=21.80 Aligned_cols=18 Identities=11% Similarity=0.386 Sum_probs=12.9
Q ss_pred CCCCCCcCCCCCCCcccc
Q 019860 276 DRTICPLCSQKRANPSVV 293 (334)
Q Consensus 276 ~~~~CpiC~~~~~~p~~~ 293 (334)
....|++|++...+...+
T Consensus 11 k~~~C~~C~k~f~~~~~L 28 (48)
T 2epr_A 11 KQVACEICGKIFRDVYHL 28 (48)
T ss_dssp CSEEETTTTEEESSHHHH
T ss_pred cCeeCCCCCcccCCHHHH
Confidence 356899998887776544
No 193
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=26.78 E-value=24 Score=23.80 Aligned_cols=25 Identities=20% Similarity=0.441 Sum_probs=14.2
Q ss_pred CCCCCCcCCCCC--C---CcccccCCcccc
Q 019860 276 DRTICPLCSQKR--A---NPSVVTVSGFVF 300 (334)
Q Consensus 276 ~~~~CpiC~~~~--~---~p~~~~~~G~vf 300 (334)
....||-|+..+ . +--.+..||+++
T Consensus 18 ~~k~CP~CG~~~fm~~~~~R~~C~kCG~t~ 47 (50)
T 3j20_Y 18 KNKFCPRCGPGVFMADHGDRWACGKCGYTE 47 (50)
T ss_dssp SSEECSSSCSSCEEEECSSEEECSSSCCEE
T ss_pred ecccCCCCCCceEEecCCCeEECCCCCCEE
Confidence 356899998742 1 112455566553
No 194
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=26.61 E-value=34 Score=24.19 Aligned_cols=16 Identities=25% Similarity=0.571 Sum_probs=12.2
Q ss_pred CCCCCCCcCCCC-CCCc
Q 019860 275 PDRTICPLCSQK-RANP 290 (334)
Q Consensus 275 ~~~~~CpiC~~~-~~~p 290 (334)
+|..+|.||.+. +.|-
T Consensus 7 ~d~~~C~iC~KTKFADG 23 (62)
T 2a20_A 7 GDAPTCGICHKTKFADG 23 (62)
T ss_dssp SCCCCCSSSSCSCCCSS
T ss_pred CCcchhhhhccceeccC
Confidence 478899999995 5544
No 195
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=26.52 E-value=24 Score=28.84 Aligned_cols=31 Identities=19% Similarity=0.368 Sum_probs=23.2
Q ss_pred CCCCCcCCCCCC---Cc-ccccCCcccccHHHHHH
Q 019860 277 RTICPLCSQKRA---NP-SVVTVSGFVFCYACIFK 307 (334)
Q Consensus 277 ~~~CpiC~~~~~---~p-~~~~~~G~vfC~~Ci~~ 307 (334)
...|.+|.++.. |. .++..|.|-+|..|-..
T Consensus 55 ~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~ 89 (134)
T 1zbd_B 55 VNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVE 89 (134)
T ss_dssp SSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEE
T ss_pred CccccccCCCcccccCCCCCCCCCCcccccccCCc
Confidence 568999999873 32 46777888888888663
No 196
>2i50_A Ubiquitin carboxyl-terminal hydrolase 16; alpha/beta zinc-finger, ring-finger, ZNF-UBP, metalloprotein, ubiquitin-binding protein, USP; NMR {Homo sapiens}
Probab=25.86 E-value=18 Score=29.24 Aligned_cols=34 Identities=18% Similarity=0.260 Sum_probs=22.8
Q ss_pred CCCCcCCCC-------------CCCcccccCCcccccH-----HHHHHHhhc
Q 019860 278 TICPLCSQK-------------RANPSVVTVSGFVFCY-----ACIFKYVSQ 311 (334)
Q Consensus 278 ~~CpiC~~~-------------~~~p~~~~~~G~vfC~-----~Ci~~~~~~ 311 (334)
..|+.|... ..|--++-+||||.|- .-+.++.++
T Consensus 29 ~~C~~C~~~~~~~~~~~~~~~~~~~Lw~CL~CG~vgCgr~~~~~Ha~~H~~~ 80 (126)
T 2i50_A 29 NICQDCKTDNKVKDKAEEETEEKPSVWLCLKCGHQGCGRNSQEQHALKHYLT 80 (126)
T ss_dssp SSCHHHHTCTTSSCSSCTTTCCCCCEEEETTTCCEEECTTSSSCHHHHHHHS
T ss_pred CcCccccccccccccccccccccccceeeeeCCccccCCCCcchHHHHHHhC
Confidence 469999874 3444455569999994 446666665
No 197
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=25.59 E-value=15 Score=21.96 Aligned_cols=16 Identities=19% Similarity=0.519 Sum_probs=11.7
Q ss_pred CCCCCcCCCCCCCccc
Q 019860 277 RTICPLCSQKRANPSV 292 (334)
Q Consensus 277 ~~~CpiC~~~~~~p~~ 292 (334)
...||+|+..+-|+-.
T Consensus 3 k~~CpvCk~q~Pd~kt 18 (28)
T 2jvx_A 3 DFCCPKCQYQAPDMDT 18 (28)
T ss_dssp CEECTTSSCEESSHHH
T ss_pred cccCccccccCcChHH
Confidence 4578888888777643
No 198
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=25.45 E-value=38 Score=21.54 Aligned_cols=34 Identities=21% Similarity=0.418 Sum_probs=21.8
Q ss_pred CCCCcCCCCCCCcccccCCcccccHHHHHHHhhc-----CCCCCCCCCCCC
Q 019860 278 TICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQ-----YKRCPVTLMPAT 323 (334)
Q Consensus 278 ~~CpiC~~~~~~p~~~~~~G~vfC~~Ci~~~~~~-----~~~CPv~~~~~~ 323 (334)
..|++|++...+...+. .++.. .-.|++|++...
T Consensus 2 ~~C~~C~~~f~~~~~l~------------~H~~~h~~~~~~~C~~C~~~f~ 40 (57)
T 1bbo_A 2 YICEECGIRXKKPSMLK------------KHIRTHTDVRPYHCTYCNFSFK 40 (57)
T ss_dssp CBCTTTCCBCSSHHHHH------------HHHHHTSSCCCEECSSSSCEES
T ss_pred CcCCCCcCcCCCHHHHH------------HHHHhcCCCCCccCCCCCchhc
Confidence 46899988887775543 12222 236999987653
No 199
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=25.32 E-value=25 Score=27.79 Aligned_cols=10 Identities=10% Similarity=-0.064 Sum_probs=7.9
Q ss_pred CC-CCCCCCCC
Q 019860 312 YK-RCPVTLMP 321 (334)
Q Consensus 312 ~~-~CPv~~~~ 321 (334)
.. .||.|+.+
T Consensus 89 ~~~~CP~Cgs~ 99 (119)
T 2kdx_A 89 DYGVCEKCHSK 99 (119)
T ss_dssp TTCCCSSSSSC
T ss_pred CCCcCccccCC
Confidence 45 89999876
No 200
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=25.01 E-value=16 Score=27.54 Aligned_cols=11 Identities=27% Similarity=0.887 Sum_probs=8.9
Q ss_pred CCCCcCCCCCC
Q 019860 278 TICPLCSQKRA 288 (334)
Q Consensus 278 ~~CpiC~~~~~ 288 (334)
..||||+.++.
T Consensus 9 ~~~PlCG~~L~ 19 (95)
T 2k5c_A 9 AKCPICGSPLK 19 (95)
T ss_dssp EECSSSCCEEC
T ss_pred ccCCcCCCccC
Confidence 47999999764
No 201
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=24.73 E-value=43 Score=28.24 Aligned_cols=43 Identities=19% Similarity=0.370 Sum_probs=29.7
Q ss_pred CCCCCcCCCCCCCccccc--CCcccccHHHHHHHhhc----------CCCCCCCCC
Q 019860 277 RTICPLCSQKRANPSVVT--VSGFVFCYACIFKYVSQ----------YKRCPVTLM 320 (334)
Q Consensus 277 ~~~CpiC~~~~~~p~~~~--~~G~vfC~~Ci~~~~~~----------~~~CPv~~~ 320 (334)
...|-+|.+-- +=..+. .|-.+||..||...+-. .=.|=+|.-
T Consensus 79 ~~yC~wC~~Gg-~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P 133 (159)
T 3a1b_A 79 QSYCTICCGGR-EVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGH 133 (159)
T ss_dssp BSSCTTTSCCS-EEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCS
T ss_pred cceeeEecCCC-eEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCC
Confidence 45799999853 112333 47799999999988843 235888873
No 202
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=24.34 E-value=53 Score=25.91 Aligned_cols=39 Identities=15% Similarity=0.260 Sum_probs=26.1
Q ss_pred CCCCCcCCCCCCCcccccCCcccccHHHHHHHhhcCCCCCCCCCCCC
Q 019860 277 RTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPAT 323 (334)
Q Consensus 277 ~~~CpiC~~~~~~p~~~~~~G~vfC~~Ci~~~~~~~~~CPv~~~~~~ 323 (334)
...|+-|+++|.+..++..-|..|-..| -+|-.|+.++.
T Consensus 61 ~~~C~~C~~~I~~~~~v~a~~~~wH~~C--------F~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYAMDSYWHSRC--------LKCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEETTEEEETTT--------SBCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEEeCCcEEcccc--------cCcCcCCCccc
Confidence 4689999999987754444676665555 34666777664
No 203
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=24.29 E-value=70 Score=24.89 Aligned_cols=36 Identities=11% Similarity=0.358 Sum_probs=27.0
Q ss_pred CCCCCCcCCCCCC-CcccccCCcccccHHHHHHHhhc
Q 019860 276 DRTICPLCSQKRA-NPSVVTVSGFVFCYACIFKYVSQ 311 (334)
Q Consensus 276 ~~~~CpiC~~~~~-~p~~~~~~G~vfC~~Ci~~~~~~ 311 (334)
+-..|-.|.+.+. .......-|.+||..|..+.+..
T Consensus 35 ~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~~ 71 (123)
T 2l3k_A 35 ECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTKI 71 (123)
T ss_dssp TTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHHH
T ss_pred ccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhcc
Confidence 4678999999994 33333348999999999887753
No 204
>2ida_A Hypothetical protein; zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: g.44.1.5
Probab=24.25 E-value=27 Score=27.24 Aligned_cols=28 Identities=18% Similarity=0.228 Sum_probs=20.1
Q ss_pred CCCCCcCCCCCCCcc---cccCCcccccHHH
Q 019860 277 RTICPLCSQKRANPS---VVTVSGFVFCYAC 304 (334)
Q Consensus 277 ~~~CpiC~~~~~~p~---~~~~~G~vfC~~C 304 (334)
...|..|...-.+.. ++-+||||.|.+=
T Consensus 18 ~~~C~~C~~~~~~Wv~LwlCL~CG~VGC~r~ 48 (102)
T 2ida_A 18 ALGCEECLKIGSPWVHLRICRTCGHVGCCDD 48 (102)
T ss_dssp SSSCHHHHTTTCCCSCBEEESSSCCCCBCTT
T ss_pred CCcCccccccCCcchheeeeeEcCCCcccCC
Confidence 457999988765543 4556999999543
No 205
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=24.19 E-value=34 Score=32.01 Aligned_cols=30 Identities=20% Similarity=0.310 Sum_probs=19.4
Q ss_pred CCCCCcCCCC----CCCc----ccccCCcccccHHHHH
Q 019860 277 RTICPLCSQK----RANP----SVVTVSGFVFCYACIF 306 (334)
Q Consensus 277 ~~~CpiC~~~----~~~p----~~~~~~G~vfC~~Ci~ 306 (334)
...||-|+.. +.|. .||..||.|.--.-|.
T Consensus 21 ~~~Cp~Cg~~~~~iv~D~~~G~~vC~~CG~Vl~e~~id 58 (345)
T 3k7a_M 21 VLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVD 58 (345)
T ss_dssp CCCCSTTCCSCCCCCCCSSSCSCCCSSSCCCCCCCCCC
T ss_pred CCcCcCCCCCCCceEEECCCCCEecCCCCeEccccccc
Confidence 4579999873 3443 4777788777544444
No 206
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=24.09 E-value=44 Score=22.89 Aligned_cols=11 Identities=27% Similarity=0.531 Sum_probs=6.4
Q ss_pred CCCCcCCCCCC
Q 019860 278 TICPLCSQKRA 288 (334)
Q Consensus 278 ~~CpiC~~~~~ 288 (334)
..|.-|+++|.
T Consensus 12 ~~C~~C~~~i~ 22 (72)
T 3f6q_B 12 ATCERCKGGFA 22 (72)
T ss_dssp CBCTTTCCBCC
T ss_pred ccchhcCcccc
Confidence 35666666655
No 207
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=23.54 E-value=59 Score=26.81 Aligned_cols=37 Identities=14% Similarity=0.109 Sum_probs=27.3
Q ss_pred CCCCCCcCCCCCCC--cccccCCcccccHHHHHHHhhcC
Q 019860 276 DRTICPLCSQKRAN--PSVVTVSGFVFCYACIFKYVSQY 312 (334)
Q Consensus 276 ~~~~CpiC~~~~~~--p~~~~~~G~vfC~~Ci~~~~~~~ 312 (334)
+-..|..|.+.+.. ......-|.+||..|..+-....
T Consensus 92 ~CF~C~~C~~~L~~g~~f~~~~~g~~~C~~c~~~~~~~~ 130 (169)
T 2rgt_A 92 HCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQGG 130 (169)
T ss_dssp GGCBCTTTCCBCCTTCEEEECTTSCEEEHHHHHHHHHCC
T ss_pred CCCcCCCCCCCCCCCCceEEccCCeEECHHHHHHHhhcc
Confidence 35689999999863 32233379999999998887654
No 208
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=23.43 E-value=39 Score=21.66 Aligned_cols=35 Identities=17% Similarity=0.379 Sum_probs=23.0
Q ss_pred CCCCCcCCCCCCCcccccCCcccccHHHHHHHhh-c-----CCCCCCCCCCCC
Q 019860 277 RTICPLCSQKRANPSVVTVSGFVFCYACIFKYVS-Q-----YKRCPVTLMPAT 323 (334)
Q Consensus 277 ~~~CpiC~~~~~~p~~~~~~G~vfC~~Ci~~~~~-~-----~~~CPv~~~~~~ 323 (334)
...|++|.+.......+. .+++ . .-.|++|++...
T Consensus 12 ~~~C~~C~k~f~~~~~L~------------~H~~~~H~~~k~~~C~~C~k~F~ 52 (54)
T 2eps_A 12 PYICQSCGKGFSRPDHLN------------GHIKQVHTSERPHKCQVWVSGPS 52 (54)
T ss_dssp CEECSSSCCEESSHHHHH------------HHHHHTSCCCCCCCSSSSCCSSC
T ss_pred CeECCCCCcccCCHHHHH------------HHHHHhcCCCCCccCCCCCCCCC
Confidence 468999998887765443 2332 2 248999997653
No 209
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=23.32 E-value=37 Score=21.90 Aligned_cols=34 Identities=15% Similarity=0.280 Sum_probs=21.6
Q ss_pred CCCCcCCCCCCCcccccCCcccccHHHHHHHhhcC-----CCCCCCCCCCC
Q 019860 278 TICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQY-----KRCPVTLMPAT 323 (334)
Q Consensus 278 ~~CpiC~~~~~~p~~~~~~G~vfC~~Ci~~~~~~~-----~~CPv~~~~~~ 323 (334)
..|++|++...+...+. .++..+ -.|++|++...
T Consensus 3 ~~C~~C~~~f~~~~~l~------------~H~~~h~~~~~~~C~~C~~~f~ 41 (60)
T 2adr_A 3 FVCEVCTRAFARQEHLK------------RHYRSHTNEKPYPCGLCNRAFT 41 (60)
T ss_dssp BCCTTTCCCBSCHHHHH------------HHHHTTTSSCSEECTTTCCEES
T ss_pred CcCCCCccccCCHHHHH------------HHHHHhCCCCCccCCCCCCccC
Confidence 57999988887765442 222222 36999987654
No 210
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=23.21 E-value=28 Score=21.20 Aligned_cols=17 Identities=18% Similarity=0.501 Sum_probs=12.0
Q ss_pred CCCCCcCCCCCCCcccc
Q 019860 277 RTICPLCSQKRANPSVV 293 (334)
Q Consensus 277 ~~~CpiC~~~~~~p~~~ 293 (334)
...|++|++.......+
T Consensus 10 ~~~C~~C~k~f~~~~~l 26 (45)
T 2epq_A 10 PYSCPVCGLRFKRKDRM 26 (45)
T ss_dssp SSEETTTTEECSCHHHH
T ss_pred CCcCCCCCcccCCHHHH
Confidence 46788888877766544
No 211
>3avr_A Lysine-specific demethylase 6A; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens} PDB: 3avs_A*
Probab=23.18 E-value=11 Score=37.82 Aligned_cols=51 Identities=16% Similarity=0.286 Sum_probs=33.5
Q ss_pred CCCCCCcCCCCCCCcc-ccc-----CCcccccHHHHHHHhhcCCCCCCCC-----CCCCccCeeeCcc
Q 019860 276 DRTICPLCSQKRANPS-VVT-----VSGFVFCYACIFKYVSQYKRCPVTL-----MPATVEQIRRLFH 332 (334)
Q Consensus 276 ~~~~CpiC~~~~~~p~-~~~-----~~G~vfC~~Ci~~~~~~~~~CPv~~-----~~~~~~~l~ri~~ 332 (334)
+...|.+|...+-|-. ++. ..+.|||..|+.+. |+.+. ..-+.++|..+|.
T Consensus 457 ~~~~C~~C~~~lFn~~~v~~~~~~~~~~~v~C~~Ca~~~------~~~l~~~~v~~ry~~eeL~~~yd 518 (531)
T 3avr_A 457 PAHYCSICEVEVFDLLFVTNESNSRKTYIVHCQDCARKT------SGNLENFVVLEQYKMEDLMQVYD 518 (531)
T ss_dssp CCEECTTTCCEECSEEEEEECTTCSSEEEEECHHHHHHH------CTTCTTCEEEECSCHHHHHHHHH
T ss_pred CCeeccccchhheeeEEEEecCCCCCCCCcCChhhhhhc------CccccceEEEEEcCHHHHHHHHH
Confidence 4568999999888765 332 13569999999962 33333 2346667666654
No 212
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=23.04 E-value=1.1e+02 Score=23.25 Aligned_cols=33 Identities=21% Similarity=0.424 Sum_probs=23.9
Q ss_pred CCCCCCcCCCCCCCc-ccccCCcccccHHHHHHH
Q 019860 276 DRTICPLCSQKRANP-SVVTVSGFVFCYACIFKY 308 (334)
Q Consensus 276 ~~~~CpiC~~~~~~p-~~~~~~G~vfC~~Ci~~~ 308 (334)
....|+||..--.+. --+.+||-||--.|+.+-
T Consensus 14 ~D~~C~VC~~~t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 14 NDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CSCCCTTTCCCCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCcccCccccccccceeccccccccccHhhcccc
Confidence 466899998643322 124569999999999985
No 213
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=22.75 E-value=43 Score=23.01 Aligned_cols=36 Identities=17% Similarity=0.198 Sum_probs=23.2
Q ss_pred CCCCCCcCCCCCCCcccccCCcccccHHHHHHHhhcC-----CCCCCCCCCCC
Q 019860 276 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQY-----KRCPVTLMPAT 323 (334)
Q Consensus 276 ~~~~CpiC~~~~~~p~~~~~~G~vfC~~Ci~~~~~~~-----~~CPv~~~~~~ 323 (334)
....|++|.+.......+. .++..+ -.|++|++...
T Consensus 17 ~~~~C~~C~~~f~~~~~l~------------~H~~~h~~~~~~~C~~C~~~f~ 57 (77)
T 2cot_A 17 RRYKCDECGKSFSHSSDLS------------KHRRTHTGEKPYKCDECGKAFI 57 (77)
T ss_dssp CSSBCSSSCCBCSCHHHHH------------HHHTTTCCSCSEECSSSCCEES
T ss_pred CCEECCCCCcccCCHHHHH------------HHHHHcCCCcCeeCCCCCCccC
Confidence 4578999999887765442 222222 36888887643
No 214
>3d00_A Tungsten formylmethanofuran dehydrogenase subunit; FWDE/GAPDH domain-like fold, structural genomics, joint CENT structural genomics; HET: MSE; 1.90A {Syntrophus aciditrophicus}
Probab=22.49 E-value=21 Score=30.97 Aligned_cols=25 Identities=20% Similarity=0.547 Sum_probs=19.9
Q ss_pred CCCCCCcCCCCCCCcccccCCcccccHHHHH
Q 019860 276 DRTICPLCSQKRANPSVVTVSGFVFCYACIF 306 (334)
Q Consensus 276 ~~~~CpiC~~~~~~p~~~~~~G~vfC~~Ci~ 306 (334)
....|++|++.+-+. |-..|.+|.-
T Consensus 162 ~~~~C~~CGE~~~~~------g~~~C~~C~~ 186 (191)
T 3d00_A 162 KIVLCPQCREAYPAQ------DGELCLSCQG 186 (191)
T ss_dssp CEEECTTTCCEEEGG------GCSSCHHHHT
T ss_pred CCEECCcCCCChhhC------CCcCCccccC
Confidence 356899999976544 9999999963
No 215
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=22.11 E-value=21 Score=24.35 Aligned_cols=40 Identities=10% Similarity=0.076 Sum_probs=23.4
Q ss_pred CCCCCCcCCCCCCCcccccCCcccccHHHHHHHh-hcCCCCCCCCCCCC
Q 019860 276 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYV-SQYKRCPVTLMPAT 323 (334)
Q Consensus 276 ~~~~CpiC~~~~~~p~~~~~~G~vfC~~Ci~~~~-~~~~~CPv~~~~~~ 323 (334)
....|++|.+...+...+. -|+- .+. +..-.|++|++...
T Consensus 13 k~~~C~~C~k~f~~~~~L~--~H~~------~h~~~~~~~C~~C~~~f~ 53 (72)
T 1x6e_A 13 KPYGCVECGKAFSRSSILV--QHQR------VHTGEKPYKCLECGKAFS 53 (72)
T ss_dssp CCEECSSSCCEESSHHHHH--HHHH------GGGCSCCEECSSSCCEES
T ss_pred CCccCCCCCCccCCHHHHH--HHHH------hcCCCCCeECCCCCcccC
Confidence 3568999998887765543 1210 011 11247999987653
No 216
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=21.67 E-value=28 Score=24.95 Aligned_cols=42 Identities=17% Similarity=0.223 Sum_probs=24.1
Q ss_pred CCCCCcCCCCCCCcccccCCcccccHHHHHHHhhcCCCCCCCCC
Q 019860 277 RTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLM 320 (334)
Q Consensus 277 ~~~CpiC~~~~~~p~~~~~~G~vfC~~Ci~~~~~~~~~CPv~~~ 320 (334)
-..|..|.+++.+......-|.+||.+|-.+-. ..+|-.|+.
T Consensus 34 CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f--~~~c~gcg~ 75 (81)
T 1a7i_A 34 CFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKY--GPKGYGYGQ 75 (81)
T ss_dssp SEECSSSCCEECSSCCEEETTEEECSHHHHHHC--C--------
T ss_pred cCccCCCCCCCCCCCeEeeCCEEECHHHHHHHh--CCcccccCC
Confidence 467888988887764333488999988876543 345666654
No 217
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=21.54 E-value=37 Score=26.85 Aligned_cols=30 Identities=20% Similarity=0.470 Sum_probs=23.5
Q ss_pred CCCCCcCCCCCCC---cccccCCcccccHHHHHH
Q 019860 277 RTICPLCSQKRAN---PSVVTVSGFVFCYACIFK 307 (334)
Q Consensus 277 ~~~CpiC~~~~~~---p~~~~~~G~vfC~~Ci~~ 307 (334)
-..|..|.+.+.+ .... .-|.+||..|-.+
T Consensus 88 CF~C~~C~~~L~~~g~~f~~-~dg~~yC~~cy~~ 120 (123)
T 2l4z_A 88 CLKCSSCQAQLGDIGTSSYT-KSGMILCRNDYIR 120 (123)
T ss_dssp TSBCTTTCCBGGGTTCCCBC-SSSCCBCHHHHHH
T ss_pred ccCcCcCCCcccccCCceEE-ECCEEeCHHHhhh
Confidence 4689999999962 3444 5999999999765
No 218
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=21.52 E-value=66 Score=22.74 Aligned_cols=47 Identities=9% Similarity=0.191 Sum_probs=29.0
Q ss_pred CCCCCCcCCCCCCCc---------------ccccCCcccccHHH-HHHHhhcC-----CCCCCCCCCC
Q 019860 276 DRTICPLCSQKRANP---------------SVVTVSGFVFCYAC-IFKYVSQY-----KRCPVTLMPA 322 (334)
Q Consensus 276 ~~~~CpiC~~~~~~p---------------~~~~~~G~vfC~~C-i~~~~~~~-----~~CPv~~~~~ 322 (334)
....|++|.+...+. -.+..||..|-..- +..++..+ -.|++|++..
T Consensus 7 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f 74 (96)
T 2dmd_A 7 GPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYAS 74 (96)
T ss_dssp CCCCBTTTTBCCCCHHHHHHHGGGCCCCCSEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEE
T ss_pred cCeECCCCCCccCCHHHHHHHHHhcCCCCCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCCcc
Confidence 357899999876543 34556777775533 33444433 3688888764
No 219
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.08 E-value=60 Score=23.67 Aligned_cols=42 Identities=10% Similarity=0.228 Sum_probs=23.2
Q ss_pred CCCCCCcCCCCCC-CcccccCCcccccHHHHHHHhhcCCCCCCCCCCCC
Q 019860 276 DRTICPLCSQKRA-NPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPAT 323 (334)
Q Consensus 276 ~~~~CpiC~~~~~-~p~~~~~~G~vfC~~Ci~~~~~~~~~CPv~~~~~~ 323 (334)
....|++|++... ....+. -|+- ++.-.+..-.|++|++...
T Consensus 23 ~~~~C~~C~k~f~~~~~~L~--~H~~----~h~~~~~~~~C~~C~k~F~ 65 (98)
T 2gqj_A 23 GEAVCPTCNVVTRKTLVGLK--KHME----VCQKLQDALKCQHCRKQFK 65 (98)
T ss_dssp SCCCCTTTCCCCSSCSHHHH--HHHH----HHHHHHHHHSCSSSCCCCS
T ss_pred CCcCCCCCCCChhhhHHHHH--HHHH----HHcCCCCCEECCCCCCccC
Confidence 4578999999987 654442 2210 0000012246888876653
No 220
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.05 E-value=54 Score=23.58 Aligned_cols=10 Identities=20% Similarity=0.564 Sum_probs=5.5
Q ss_pred CCCcCCCCCC
Q 019860 279 ICPLCSQKRA 288 (334)
Q Consensus 279 ~CpiC~~~~~ 288 (334)
.|+-|.++|.
T Consensus 17 ~C~~C~~~I~ 26 (80)
T 2dj7_A 17 HCAGCKEEIK 26 (80)
T ss_dssp CCTTTCCCCS
T ss_pred CCcCcCCeeC
Confidence 4555555554
No 221
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.91 E-value=84 Score=22.20 Aligned_cols=35 Identities=17% Similarity=0.326 Sum_probs=22.0
Q ss_pred CCCCCCcCCCCCCC-c-ccccCCcccccHHHHHHHhh
Q 019860 276 DRTICPLCSQKRAN-P-SVVTVSGFVFCYACIFKYVS 310 (334)
Q Consensus 276 ~~~~CpiC~~~~~~-p-~~~~~~G~vfC~~Ci~~~~~ 310 (334)
+-..|..|.+.+.+ . -.+..-|.+||..|..+.+.
T Consensus 40 ~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~~ 76 (81)
T 1x6a_A 40 ECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVS 76 (81)
T ss_dssp TSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHHC
T ss_pred ccCCccCCCCccCCCCcEEEeeCCEEECHHHHHHHhc
Confidence 35677888887753 2 23223778888888766543
No 222
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.87 E-value=79 Score=22.40 Aligned_cols=32 Identities=9% Similarity=0.236 Sum_probs=19.4
Q ss_pred CCCCCcCCCCCCCcccccC-CcccccHHHHHHH
Q 019860 277 RTICPLCSQKRANPSVVTV-SGFVFCYACIFKY 308 (334)
Q Consensus 277 ~~~CpiC~~~~~~p~~~~~-~G~vfC~~Ci~~~ 308 (334)
-..|..|.+++.+...... -|.+||..|-.+-
T Consensus 41 CF~C~~C~~~L~~~~f~~~~~g~~yC~~cy~~~ 73 (81)
T 2dlo_A 41 CFTCVVCHRGLDGIPFTVDATSQIHCIEDFHRK 73 (81)
T ss_dssp TCBCSSSCCBCTTSCEECCTTCCCEEHHHHHHH
T ss_pred hcCcccCCCccCCCeeEECCCCEEECHHHHHHH
Confidence 4567777777765543222 4677777776543
No 223
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.36 E-value=70 Score=22.69 Aligned_cols=12 Identities=25% Similarity=0.337 Sum_probs=7.3
Q ss_pred CCCcCCCCCCCc
Q 019860 279 ICPLCSQKRANP 290 (334)
Q Consensus 279 ~CpiC~~~~~~p 290 (334)
.|+.|.++|.+.
T Consensus 17 ~C~~C~~~I~~~ 28 (81)
T 1v6g_A 17 RCFSCDQFIEGE 28 (81)
T ss_dssp BCTTTCCBCCSC
T ss_pred cCccccCEeccc
Confidence 566666666643
No 224
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.29 E-value=30 Score=24.78 Aligned_cols=29 Identities=17% Similarity=0.398 Sum_probs=16.9
Q ss_pred CCCCCcCCCCCCCcccccCCcccccHHHH
Q 019860 277 RTICPLCSQKRANPSVVTVSGFVFCYACI 305 (334)
Q Consensus 277 ~~~CpiC~~~~~~p~~~~~~G~vfC~~Ci 305 (334)
-..|..|.+.+.+......-|.+||..|-
T Consensus 43 CF~C~~C~~~L~~~~f~~~~~~~~C~~c~ 71 (82)
T 2ehe_A 43 CFRCCRCQRSLADEPFTCQDSELLCNDCY 71 (82)
T ss_dssp TSBCTTTCCBCSSCCEEEETTEEEETTTS
T ss_pred CCeecCCCCccCCCccEeeCCEEECHHHH
Confidence 45666777766654332336667766664
No 225
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=20.11 E-value=47 Score=17.22 Aligned_cols=15 Identities=27% Similarity=0.558 Sum_probs=10.2
Q ss_pred CCCCcCCCCCCCccc
Q 019860 278 TICPLCSQKRANPSV 292 (334)
Q Consensus 278 ~~CpiC~~~~~~p~~ 292 (334)
..|+.|++.......
T Consensus 3 ~~C~~C~~~f~~~~~ 17 (29)
T 2m0e_A 3 HKCPHCDKKFNQVGN 17 (29)
T ss_dssp CCCSSCCCCCCTTTH
T ss_pred CcCCCCCcccCCHHH
Confidence 468888877766543
Done!