BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019861
(334 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HG2|A Chain A, The Structure Of A Putative Type Ii Methyltransferase From
Anaeromyxobacter Dehalogenans.
pdb|4HG2|B Chain B, The Structure Of A Putative Type Ii Methyltransferase From
Anaeromyxobacter Dehalogenans
Length = 257
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 44/99 (44%), Gaps = 11/99 (11%)
Query: 179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ--------QESNFPKD 230
G+ +D CGSG S A+ F V A+D E ++Q + +++ P
Sbjct: 41 GDALDCGCGSGQASLGLAE--FFERVHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPA 98
Query: 231 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 269
S+D A A H W AE+ RV RPG VF TY
Sbjct: 99 SVDVAIAAQAXH-WFDLDRFWAELRRVARPGAVFAAVTY 136
>pdb|3BKW|A Chain A, Crystal Structure Of S-Adenosylmethionine Dependent
Methyltransferase (Np_104914.1) From Mesorhizobium Loti
At 1.60 A Resolution
pdb|3BKW|B Chain B, Crystal Structure Of S-Adenosylmethionine Dependent
Methyltransferase (Np_104914.1) From Mesorhizobium Loti
At 1.60 A Resolution
Length = 243
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 51/115 (44%), Gaps = 12/115 (10%)
Query: 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQC------- 217
E+ ++ L V G I+D CG G F R + G S V+ LD SE L +
Sbjct: 31 EWPALRAXLPEVGGLRIVDLGCGFGWFCRWAHEHGA-SYVLGLDLSEKXLARARAAGPDT 89
Query: 218 ---YEFVQQES-NFPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 268
YE + + P+DS D ++ A+H + + + L PGG FV +T
Sbjct: 90 GITYERADLDKLHLPQDSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFST 144
>pdb|3CCF|A Chain A, Crystal Structure Of Putative Methyltransferase
(Yp_321342.1) From Anabaena Variabilis Atcc 29413 At
1.90 A Resolution
pdb|3CCF|B Chain B, Crystal Structure Of Putative Methyltransferase
(Yp_321342.1) From Anabaena Variabilis Atcc 29413 At
1.90 A Resolution
Length = 279
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 62/143 (43%), Gaps = 24/143 (16%)
Query: 151 RQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYS 210
+ +FVW + E + L P G I+D CG+G + A+SG + V+ D +
Sbjct: 38 KHSFVW-------QYGEDLLQLLNPQPGEFILDLGCGTGQLTEKIAQSG--AEVLGTDNA 88
Query: 211 ENMLKQCYEF-------VQQESNFPKDS-IDAVHAGAAIHCWSSPSTGVAEISRVLRPGG 262
+++ + V NF D +DAV + A +H P +A I + L+ GG
Sbjct: 89 ATXIEKARQNYPHLHFDVADARNFRVDKPLDAVFSNAXLHWVKEPEAAIASIHQALKSGG 148
Query: 263 VFVG-------TTYIVDGPFNLI 278
FV YI++ +N +
Sbjct: 149 RFVAEFGGKGNIKYILEALYNAL 171
>pdb|1VL5|A Chain A, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
pdb|1VL5|B Chain B, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
pdb|1VL5|C Chain C, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
pdb|1VL5|D Chain D, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
Length = 260
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 18/102 (17%)
Query: 177 LGGN--IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLK-----------QCYEFVQQ 223
L GN ++D + G G + FA VVA D +E++LK Q E+VQ
Sbjct: 35 LKGNEEVLDVATGGGHVANAFAP--FVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQG 92
Query: 224 ESN---FPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGG 262
++ F + V A H + +P++ V+E RVL+ GG
Sbjct: 93 DAEQXPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGG 134
>pdb|1VE3|A Chain A, Crystal Structure Of Ph0226 Protein From Pyrococcus
Horikoshii Ot3
pdb|1VE3|B Chain B, Crystal Structure Of Ph0226 Protein From Pyrococcus
Horikoshii Ot3
Length = 227
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 19/113 (16%)
Query: 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ-QESN 226
L+ Y K G ++D +CG G FS + G VV +D SE+ +++ E+ + +ESN
Sbjct: 31 LLXKYXKK--RGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDXIRKAREYAKSRESN 86
Query: 227 ------------FPKDSID-AVHAGAAIHCWSSPSTGV-AEISRVLRPGGVFV 265
F + D + + +H V E+ RVL+P G F+
Sbjct: 87 VEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFI 139
>pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
pdb|3MGG|B Chain B, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
Length = 276
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 49/110 (44%), Gaps = 18/110 (16%)
Query: 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ---------ESN-- 226
G +++A CG G + I AK+ + + ++D S L++ E ++ ++N
Sbjct: 38 GAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIF 97
Query: 227 ---FPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDG 273
F S D + + SP + + +VL+PG GT +++G
Sbjct: 98 SLPFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPG----GTITVIEG 143
>pdb|2PXX|A Chain A, Human Putative Methyltransferase Mgc2408
Length = 215
Score = 34.3 bits (77), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 56/134 (41%), Gaps = 32/134 (23%)
Query: 165 EFELMKGYLKPVL--GGNIIDASCG-SGLFSRIFAKSGLFSLVVALDYSENM---LKQCY 218
+F + L+P L I+ CG S L +F G F V ++DYS + ++ CY
Sbjct: 28 DFSSFRALLEPELRPEDRILVLGCGNSALSYELFL--GGFPNVTSVDYSSVVVAAMQACY 85
Query: 219 EFVQQ---------ESNFPKDSIDAVHAGAAIHC--------WSSPSTGV-------AEI 254
V Q + +FP S D V + W+ S GV +E+
Sbjct: 86 AHVPQLRWETMDVRKLDFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEV 145
Query: 255 SRVLRPGGVFVGTT 268
SRVL PGG F+ T
Sbjct: 146 SRVLVPGGRFISMT 159
>pdb|3EGE|A Chain A, Crystal Structure Of Putative Methyltransferase From
Antibiotic Biosynthesis Pathway (Yp_324569.1) From
Anabaena Variabilis Atcc 29413 At 2.40 A Resolution
Length = 261
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 41/98 (41%), Gaps = 10/98 (10%)
Query: 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE--------SNFPK 229
G I D G+G +S A GLF V A++ S +Q Q E P
Sbjct: 35 GSVIADIGAGTGGYSVALANQGLF--VYAVEPSIVXRQQAVVHPQVEWFTGYAENLALPD 92
Query: 230 DSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGT 267
S+D V + AIH +S E R++R G + + T
Sbjct: 93 KSVDGVISILAIHHFSHLEKSFQEXQRIIRDGTIVLLT 130
>pdb|3DLC|A Chain A, Crystal Structure Of A Putative
S-Adenosyl-L-Methionine-Dependent Methyltransferase
(Mmp1179) From Methanococcus Maripaludis At 1.15 A
Resolution
Length = 219
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 46/110 (41%), Gaps = 20/110 (18%)
Query: 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENM------------LKQCYEFVQQ 223
+ G ID G G S AK FS + ALD+S++ L + VQ
Sbjct: 42 ITAGTCIDIGSGPGALSIALAKQSDFS-IRALDFSKHXNEIALKNIADANLNDRIQIVQG 100
Query: 224 E-SNFPKDS--IDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 270
+ N P + D + + ++ W +T EI R+L+ G G TYI
Sbjct: 101 DVHNIPIEDNYADLIVSRGSVFFWEDVATAFREIYRILKSG----GKTYI 146
>pdb|1XXL|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis At 2.1 A Resolution
pdb|1XXL|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis At 2.1 A Resolution
pdb|2GLU|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis
pdb|2GLU|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis
Length = 239
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 227 FPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV 265
FP DS D + A H +S V E++RVL+ G F+
Sbjct: 83 FPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFL 121
>pdb|3I9F|A Chain A, Crystal Structure Of A Putative Type 11 Methyltransferase
From Sulfolobus Solfataricus
pdb|3I9F|B Chain B, Crystal Structure Of A Putative Type 11 Methyltransferase
From Sulfolobus Solfataricus
Length = 170
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/90 (20%), Positives = 38/90 (42%), Gaps = 8/90 (8%)
Query: 179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE------FVQQESNFPKDSI 232
G I+D CG+G + + + + + +D + LK+ E + P +S+
Sbjct: 19 GVIVDYGCGNGFYCKYLLEFA--TKLYCIDINVIALKEVKEKFDSVITLSDPKEIPDNSV 76
Query: 233 DAVHAGAAIHCWSSPSTGVAEISRVLRPGG 262
D + + H ++E+ R+L+ G
Sbjct: 77 DFILFANSFHDMDDKQHVISEVKRILKDDG 106
>pdb|2F20|A Chain A, X-Ray Crystal Structure Of Protein Bt_1218 From
Bacteroides Thetaiotaomicron. Northeast Structural
Genomics Consortium Target Btr8.
pdb|2F20|B Chain B, X-Ray Crystal Structure Of Protein Bt_1218 From
Bacteroides Thetaiotaomicron. Northeast Structural
Genomics Consortium Target Btr8
Length = 240
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 9/89 (10%)
Query: 194 IFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKDSIDAV-HAGAAI------HCWSS 246
IF+ +G++ + D E + + + ++N D ID H AI W +
Sbjct: 132 IFSXAGIYDRWLDKDTGEEH--ETFSIITTDTNSLTDYIDNTKHRXPAILTQEEEEKWLN 189
Query: 247 PSTGVAEISRVLRPGGVFVGTTYIVDGPF 275
PS AEI+ +L+P Y++ F
Sbjct: 190 PSLSKAEIASLLKPFDTEKXDAYVIRNDF 218
>pdb|4AZW|A Chain A, Crystal Structure Of Monomeric Wbdd
Length = 471
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF 227
N++D C G FS A G + +V +D+ + + C ++ +F
Sbjct: 69 NVLDLGCAQGFFSLSLASKG--ATIVGIDFQQENINVCRALAEENPDF 114
>pdb|4AZS|A Chain A, High Resolution (2.2 A) Crystal Structure Of Wbdd.
pdb|4AZT|A Chain A, Co-Crystal Structure Of Wbdd And Kinase Inhibitor
Ly294002.
pdb|4AZV|A Chain A, Co-crystal Structure Of Wbdd And Kinase Inhibitor
Gw435821x
Length = 569
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF 227
N++D C G FS A G + +V +D+ + + C ++ +F
Sbjct: 69 NVLDLGCAQGFFSLSLASKG--ATIVGIDFQQENINVCRALAEENPDF 114
>pdb|4AX8|A Chain A, Medium Resolution Structure Of The Bifunctional Kinase-
Methyltransferase Wbdd
Length = 569
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF 227
N++D C G FS A G + +V +D+ + + C ++ +F
Sbjct: 69 NVLDLGCAQGFFSLSLASKG--ATIVGIDFQQENINVCRALAEENPDF 114
>pdb|3BUS|A Chain A, Crystal Structure Of Rebm
pdb|3BUS|B Chain B, Crystal Structure Of Rebm
Length = 273
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 23/50 (46%)
Query: 227 FPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFN 276
F S DAV A ++H + E +RVLRPGG +++ P
Sbjct: 125 FEDASFDAVWALESLHHXPDRGRALREXARVLRPGGTVAIADFVLLAPVE 174
>pdb|2PJD|A Chain A, Crystal Structure Of 16s Rrna Methyltransferase Rsmc
Length = 343
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAK 197
+L+ L P G ++D CG+G+ S FA+
Sbjct: 186 QLLLSTLTPHTKGKVLDVGCGAGVLSVAFAR 216
>pdb|3G5C|A Chain A, Structural And Biochemical Studies On The Ectodomain Of
Human Adam22
pdb|3G5C|B Chain B, Structural And Biochemical Studies On The Ectodomain Of
Human Adam22
Length = 510
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 210 SENMLKQCYEFVQQESNFPKDSIDAVH--AGAAIHCWSSPSTGVAEISRVLRPGGV 263
SEN L EF++ +F K+ DAVH +G+ S + + I +L+ GGV
Sbjct: 70 SENPLITLREFMKYRRDFIKEKSDAVHLFSGSQFESSRSGAAYIGGICSLLKGGGV 125
>pdb|1F3L|A Chain A, Crystal Structure Of The Conserved Core Of Protein
Arginine Methyltransferase Prmt3
Length = 321
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 181 IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ 222
++D CG+G+ S AK+G V+A+D SE +L Q + ++
Sbjct: 49 VLDVGCGTGILSMFAAKAGA-KKVIAVDQSE-ILYQAMDIIR 88
>pdb|3DLI|A Chain A, Crystal Structure Of A Sam Dependent Methyltransferase
From Archaeoglobus Fulgidus
pdb|3DLI|B Chain B, Crystal Structure Of A Sam Dependent Methyltransferase
From Archaeoglobus Fulgidus
pdb|3DLI|C Chain C, Crystal Structure Of A Sam Dependent Methyltransferase
From Archaeoglobus Fulgidus
Length = 240
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 7/56 (12%)
Query: 167 ELMKGYLK---PVLGG--NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQC 217
EL+K L+ P G ++D CG G F + + G+ S + +D +E+M+K C
Sbjct: 26 ELVKARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEEGIES--IGVDINEDMIKFC 79
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,321,228
Number of Sequences: 62578
Number of extensions: 376222
Number of successful extensions: 768
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 758
Number of HSP's gapped (non-prelim): 23
length of query: 334
length of database: 14,973,337
effective HSP length: 99
effective length of query: 235
effective length of database: 8,778,115
effective search space: 2062857025
effective search space used: 2062857025
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)