BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019861
(334 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LBV4|Y1814_ARATH Uncharacterized methyltransferase At1g78140, chloroplastic
OS=Arabidopsis thaliana GN=At1g78140 PE=1 SV=1
Length = 355
Score = 387 bits (993), Expect = e-107, Method: Compositional matrix adjust.
Identities = 181/283 (63%), Positives = 215/283 (75%), Gaps = 19/283 (6%)
Query: 69 KNVLACPICYKPLTWIGDSSLSIESAA-GSSLQCNTCKKTYSGVGTHFDMTAASGSKDYG 127
K +LACPICY L WI + IESAA G +QCNTCK++YSG TH D+ ASGSK Y
Sbjct: 73 KKILACPICYNSLAWISQPNGLIESAASGIQVQCNTCKRSYSGNETHLDLAVASGSKRYS 132
Query: 128 ELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCG 187
E M +TE FR P +SF+YERGWRQNF+WGGFPGPEKEFE+ K YLKPVLGGNIIDASCG
Sbjct: 133 EPMPLSTELFRTPLVSFLYERGWRQNFIWGGFPGPEKEFEMAKAYLKPVLGGNIIDASCG 192
Query: 188 SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKD----------------- 230
SG+FSR+F +S LFSLV+ALDYSENML+QCYE + +E NFP
Sbjct: 193 SGMFSRLFTRSDLFSLVIALDYSENMLRQCYELLNKEENFPNKEKLVLVRADIARLPFLS 252
Query: 231 -SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMM 289
S+DAVHAGAA+HCW SPS+ VAEISRVLRPGGVFV TT+I DGPF+ IPF + LRQ +M
Sbjct: 253 GSVDAVHAGAALHCWPSPSSAVAEISRVLRPGGVFVATTFIYDGPFSFIPFLKNLRQEIM 312
Query: 290 QISGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMFTATKPS 332
+ SGS+ FL+ERE+ED+C+ACGLV+F RN F+M +ATKPS
Sbjct: 313 RYSGSHIFLNERELEDICKACGLVNFTRVRNGPFIMLSATKPS 355
>sp|Q0WPT7|Y2104_ARATH Uncharacterized methyltransferase At2g41040, chloroplastic
OS=Arabidopsis thaliana GN=At2g41040 PE=1 SV=1
Length = 352
Score = 268 bits (684), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 130/280 (46%), Positives = 176/280 (62%), Gaps = 22/280 (7%)
Query: 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAASGSKDYGEL 129
V ACP+CY+PL G S +++++ S +C C KTYS + D+T + DY E+
Sbjct: 77 QVFACPVCYEPLMRKGPSGINLQAIYRSGFKCGQCNKTYSSKDEYLDLTVTADLDDYNEV 136
Query: 130 MSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSG 189
TE FR P +SF+YERGWRQ F GFPGP++EF + + Y K GG ++D SCGSG
Sbjct: 137 KPITTELFRSPLVSFLYERGWRQAFKRSGFPGPDEEFRMAEEYFKEAEGGLLVDVSCGSG 196
Query: 190 LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN------------------FPKDS 231
LFSR FA+SG +S V+ALDYSENML+QC EF++ ++ FP S
Sbjct: 197 LFSRKFAQSGKYSGVIALDYSENMLRQCKEFIKNDNTFDNSTNIAVVRADVSRLPFPSGS 256
Query: 232 IDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQI 291
+DAVHAGAA+HCW SP+ +AEI RVLR GGVFVGTT++ P P+ ++R +I
Sbjct: 257 VDAVHAGAALHCWPSPTNAIAEICRVLRSGGVFVGTTFLRYSPST--PW--IIRPFQSRI 312
Query: 292 SGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMFTATKP 331
SY +L + EI+D+C +CGL D++ F+MFTA KP
Sbjct: 313 LQSYNYLMQDEIKDVCTSCGLTDYEDYIQDSFIMFTARKP 352
>sp|P65349|Y3374_MYCBO Uncharacterized methyltransferase Mb3374 OS=Mycobacterium bovis
(strain ATCC BAA-935 / AF2122/97) GN=Mb3374 PE=3 SV=1
Length = 243
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 43/98 (43%), Gaps = 8/98 (8%)
Query: 172 YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVV-----ALDYSENMLKQCYEFVQQESN 226
+L P ++D G+G + + GL + V LD L Q +
Sbjct: 33 WLLPAAARRVLDLGAGTGKLTTRLVERGLDVVAVDPIPEMLDVLRAALPQTVALLGTAEE 92
Query: 227 FPKD--SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGG 262
P D S+DAV A H W P+ + E++RVLRPGG
Sbjct: 93 IPLDDNSVDAVLVAQAWH-WVDPARAIPEVARVLRPGG 129
>sp|P65348|Y3342_MYCTU Uncharacterized methyltransferase Rv3342/MT3445 OS=Mycobacterium
tuberculosis GN=Rv3342 PE=3 SV=1
Length = 243
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 43/98 (43%), Gaps = 8/98 (8%)
Query: 172 YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVV-----ALDYSENMLKQCYEFVQQESN 226
+L P ++D G+G + + GL + V LD L Q +
Sbjct: 33 WLLPAAARRVLDLGAGTGKLTTRLVERGLDVVAVDPIPEMLDVLRAALPQTVALLGTAEE 92
Query: 227 FPKD--SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGG 262
P D S+DAV A H W P+ + E++RVLRPGG
Sbjct: 93 IPLDDNSVDAVLVAQAWH-WVDPARAIPEVARVLRPGG 129
>sp|A9WRT1|UBIE_RENSM Demethylmenaquinone methyltransferase OS=Renibacterium salmoninarum
(strain ATCC 33209 / DSM 20767 / JCM 11484 / NBRC 15589
/ NCIMB 2235) GN=ubiE PE=3 SV=1
Length = 237
Score = 48.1 bits (113), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 59/121 (48%), Gaps = 13/121 (10%)
Query: 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLK------QCYEFVQQESN--- 226
V G ++D + G+G S +A +GL VVALD+S MLK +F+ ++
Sbjct: 50 VPGQRVLDVAAGTGTSSEPYADAGLD--VVALDFSLGMLKVGKRRRPDIDFIAGDATALP 107
Query: 227 FPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGT--TYIVDGPFNLIPFSRLL 284
F +S DAV + + P +AE+ RV +PGG V ++ GPF + L+
Sbjct: 108 FADNSFDAVTISFGLRNVNEPKKALAEMLRVTKPGGKLVVAEFSHPTFGPFRTVYTEYLM 167
Query: 285 R 285
R
Sbjct: 168 R 168
>sp|D2T333|BIOC_ERWP6 Malonyl-CoA O-methyltransferase BioC OS=Erwinia pyrifoliae (strain
DSM 12163 / CIP 106111 / Ep16/96) GN=bioC PE=3 SV=1
Length = 262
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 11/111 (9%)
Query: 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 226
E + + +P ++DA CG+G FS+ + G + V ALD SE ML+ E +
Sbjct: 43 ERLLEHARPGNALRVLDAGCGTGWFSQRWRAGGHW--VTALDLSEKMLQHARENQAADCY 100
Query: 227 FPKD---------SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 268
P D S D + A+ SS + E+ RV +PGG + +T
Sbjct: 101 LPGDIEALPFADASFDRCWSNLAVQWCSSLPLALRELRRVTKPGGQVLFST 151
>sp|A0AK43|UBIE_LISW6 Demethylmenaquinone methyltransferase OS=Listeria welshimeri
serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334)
GN=ubiE PE=3 SV=1
Length = 236
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 47/100 (47%), Gaps = 15/100 (15%)
Query: 178 GGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQ------------- 223
G N++D CG+ +S + A+ G V LD+SENMLK E V++
Sbjct: 48 GTNVLDVCCGTADWSIMMAEEIGPEGHVTGLDFSENMLKVGREKVKEADLHNVELIHGNA 107
Query: 224 -ESNFPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGG 262
E FP +S D V G + + E+ RVL+PGG
Sbjct: 108 MELPFPDNSFDYVTIGFGLRNVPDYMQVLREMYRVLKPGG 147
>sp|B0RCZ0|UBIE_CLAMS Demethylmenaquinone methyltransferase OS=Clavibacter michiganensis
subsp. sepedonicus (strain ATCC 33113 / JCM 9667)
GN=ubiE PE=3 SV=1
Length = 245
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 50/105 (47%), Gaps = 14/105 (13%)
Query: 173 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLK---------QCYEFVQQ 223
+ PV G I+D + G+G + A + + VVA D+SE ML+ EFV
Sbjct: 47 VAPVAGERILDLAAGTG--TSSAALAASGAHVVAADFSEGMLEVGRRRLAGDDRVEFVHA 104
Query: 224 ESN---FPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV 265
++ F DS DAV + P G+ E+ RVL+PGG V
Sbjct: 105 DATDLPFDDDSFDAVTISFGLRNVVEPRKGLDELLRVLKPGGRIV 149
>sp|P67055|UBIE_LISMO Demethylmenaquinone methyltransferase OS=Listeria monocytogenes
serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=ubiE PE=3
SV=1
Length = 237
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 47/100 (47%), Gaps = 15/100 (15%)
Query: 178 GGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQ------------- 223
G N++D CG+ +S + A+ G V LD+SENMLK E V++
Sbjct: 48 GTNVLDVCCGTADWSIMMAEEIGPEGHVTGLDFSENMLKVGREKVKEADLHNVELIHGNA 107
Query: 224 -ESNFPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGG 262
E FP +S D V G + + E+ RVL+PGG
Sbjct: 108 MELPFPDNSFDYVTIGFGLRNVPDYMQVLREMYRVLKPGG 147
>sp|Q71Y84|UBIE_LISMF Demethylmenaquinone methyltransferase OS=Listeria monocytogenes
serotype 4b (strain F2365) GN=ubiE PE=3 SV=1
Length = 237
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 47/100 (47%), Gaps = 15/100 (15%)
Query: 178 GGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQ------------- 223
G N++D CG+ +S + A+ G V LD+SENMLK E V++
Sbjct: 48 GTNVLDVCCGTADWSIMMAEEIGPEGHVTGLDFSENMLKVGREKVKEADLHNVELIHGNA 107
Query: 224 -ESNFPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGG 262
E FP +S D V G + + E+ RVL+PGG
Sbjct: 108 MELPFPDNSFDYVTIGFGLRNVPDYMQVLREMYRVLKPGG 147
>sp|C1KWN1|UBIE_LISMC Demethylmenaquinone methyltransferase OS=Listeria monocytogenes
serotype 4b (strain CLIP80459) GN=ubiE PE=3 SV=1
Length = 237
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 47/100 (47%), Gaps = 15/100 (15%)
Query: 178 GGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQ------------- 223
G N++D CG+ +S + A+ G V LD+SENMLK E V++
Sbjct: 48 GTNVLDVCCGTADWSIMMAEEIGPEGHVTGLDFSENMLKVGREKVKEADLHNVELIHGNA 107
Query: 224 -ESNFPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGG 262
E FP +S D V G + + E+ RVL+PGG
Sbjct: 108 MELPFPDNSFDYVTIGFGLRNVPDYMQVLREMYRVLKPGG 147
>sp|P67056|UBIE_LISIN Demethylmenaquinone methyltransferase OS=Listeria innocua serovar
6a (strain CLIP 11262) GN=ubiE PE=3 SV=1
Length = 237
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 47/100 (47%), Gaps = 15/100 (15%)
Query: 178 GGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQ------------- 223
G N++D CG+ +S + A+ G V LD+SENMLK E V++
Sbjct: 48 GTNVLDVCCGTADWSIMMAEEIGPEGHVTGLDFSENMLKVGREKVKEADLHNVELIHGNA 107
Query: 224 -ESNFPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGG 262
E FP +S D V G + + E+ RVL+PGG
Sbjct: 108 MELPFPDNSFDYVTIGFGLRNVPDYMQVLREMYRVLKPGG 147
>sp|Q8EXJ3|UBIE_LEPIN Demethylmenaquinone methyltransferase OS=Leptospira interrogans
serogroup Icterohaemorrhagiae serovar Lai (strain 56601)
GN=ubiE PE=3 SV=1
Length = 249
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 59/140 (42%), Gaps = 31/140 (22%)
Query: 143 SFIYERGWRQNFVWGGFPGPEKEFEL-MKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF 201
SF+ R W+ + V +E E G+L +++D CG+G S S
Sbjct: 35 SFLLHRVWKNHLV--------REIENNFSGHL------HVLDLCCGTGDISLRLENSSFV 80
Query: 202 SLVVALDYSENMLKQCYEFVQQESN----------------FPKDSIDAVHAGAAIHCWS 245
V +D+SENML+ +++++ F D V G +
Sbjct: 81 DHVTCVDFSENMLEIAKTRLKKQAQKGRVHFELGDATKLIQFQNSQFDVVSIGFGLRNVD 140
Query: 246 SPSTGVAEISRVLRPGGVFV 265
+ S + EI RVL+PGG+F+
Sbjct: 141 NLSKAIGEIFRVLKPGGMFL 160
>sp|Q75FL1|UBIE_LEPIC Demethylmenaquinone methyltransferase OS=Leptospira interrogans
serogroup Icterohaemorrhagiae serovar copenhageni
(strain Fiocruz L1-130) GN=ubiE PE=3 SV=1
Length = 249
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 59/140 (42%), Gaps = 31/140 (22%)
Query: 143 SFIYERGWRQNFVWGGFPGPEKEFEL-MKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF 201
SF+ R W+ + V +E E G+L +++D CG+G S S
Sbjct: 35 SFLLHRVWKNHLV--------REIENNFSGHL------HVLDLCCGTGDISLRLENSSFV 80
Query: 202 SLVVALDYSENMLKQCYEFVQQESN----------------FPKDSIDAVHAGAAIHCWS 245
V +D+SENML+ +++++ F D V G +
Sbjct: 81 DHVTCVDFSENMLEIAKTRLKKQAQKGRVHFELGDATKLIQFQNSQFDVVSIGFGLRNVD 140
Query: 246 SPSTGVAEISRVLRPGGVFV 265
+ S + EI RVL+PGG+F+
Sbjct: 141 NLSKAIGEIFRVLKPGGMFL 160
>sp|P49016|UBIE_LACLA Demethylmenaquinone methyltransferase OS=Lactococcus lactis subsp.
lactis (strain IL1403) GN=ubiE PE=3 SV=1
Length = 252
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 81/176 (46%), Gaps = 31/176 (17%)
Query: 178 GGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLK-----------QCYEFVQQES 225
G +I+D CG+G ++ ++S G V+ LD+SENML+ + EF+Q +
Sbjct: 54 GLSILDLCCGTGDWTFDLSESVGPSGKVIGLDFSENMLEIAKAKLKEEAKKNIEFLQGNA 113
Query: 226 N---FPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGG--VFVGTTY----IVDGPF- 275
F K S D V G + T + EI RVL+PGG V + T++ I F
Sbjct: 114 MALPFEKGSFDVVTIGYGLRNTPDYLTVLKEIFRVLKPGGRVVCIETSHPTLPIYKQAFE 173
Query: 276 ----NLIP-----FSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRG 322
N++P F++ L++ + F + +E+L R G V + ++ G
Sbjct: 174 LYFKNVMPFLGKVFAKSLKEYQWLQKSAEDFPDAKTLEELFRKAGFVAVEYQKHGG 229
>sp|Q6D3C1|BIOC_ERWCT Malonyl-CoA O-methyltransferase BioC OS=Erwinia carotovora subsp.
atroseptica (strain SCRI 1043 / ATCC BAA-672) GN=bioC
PE=3 SV=1
Length = 253
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 54/108 (50%), Gaps = 12/108 (11%)
Query: 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE------FVQQE-SNFP-K 229
G ++DA CG+G FSR + ++G V ALD S ML E +++ + N P
Sbjct: 45 GLQVLDAGCGTGHFSRYWRQAG--RNVTALDLSAEMLAYAREQHAADRYLEGDIENLPLA 102
Query: 230 DS-IDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFN 276
DS +D ++ A+ S + E+ R+ RPGGV T + DG +
Sbjct: 103 DSCVDICYSNLAVQWCDSLPRALGELYRITRPGGVIAFAT-LADGSLS 149
>sp|E3G327|BIOC_ENTCS Malonyl-CoA O-methyltransferase BioC OS=Enterobacter cloacae
(strain SCF1) GN=bioC PE=3 SV=1
Length = 251
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 44/103 (42%), Gaps = 11/103 (10%)
Query: 179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCY------EFVQQESN---FPK 229
++DA CG G SR + +G V ALD S ML + +VQ +
Sbjct: 44 ARVLDAGCGPGGISRYWRDNGCE--VTALDLSAQMLAEARRQQAADHYVQADIEAIPLAS 101
Query: 230 DSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD 272
D V + A+ S V E+ R+LRPGGV TT D
Sbjct: 102 AQFDLVWSNLAVQWCDSLQDAVQELYRMLRPGGVLAFTTLAAD 144
>sp|Q24W96|UBIE_DESHY Demethylmenaquinone methyltransferase OS=Desulfitobacterium
hafniense (strain Y51) GN=ubiE PE=3 SV=1
Length = 253
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 55/141 (39%), Gaps = 31/141 (21%)
Query: 141 FMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-G 199
MSF ++GWR+ V P G ++D CG+ S A + G
Sbjct: 43 LMSFGLDKGWRKKAVQTVEAKP---------------GMTMVDICCGTAQLSLELAMTVG 87
Query: 200 LFSLVVALDYSENMLKQCYEFVQ-------------QESNFP--KDSIDAVHAGAAIHCW 244
+ LD+SENMLK+ E + N P +S D G +
Sbjct: 88 EQGQITGLDFSENMLKKAQENLAGSPYRSIIELRQGDAMNLPFADNSFDGATVGWGLRNL 147
Query: 245 SSPSTGVAEISRVLRPGGVFV 265
GV E+ RV++PGG+ V
Sbjct: 148 PDLEKGVQEMIRVVKPGGMVV 168
>sp|Q2SJW1|CMOB_HAHCH tRNA (mo5U34)-methyltransferase OS=Hahella chejuensis (strain KCTC
2396) GN=cmoB PE=3 SV=1
Length = 324
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 67/164 (40%), Gaps = 24/164 (14%)
Query: 172 YLKPVLGGNIIDASCGSGLFS-RIFAKSGLFSLVVALDYSENMLKQ------------CY 218
+L P+ G ++D CGSG R+ + F V+ +D S L Q Y
Sbjct: 118 HLSPLKGRFVLDVGCGSGYHCWRMLGEGAQF--VLGVDPSPKFLFQFHCVKKYAPTAPVY 175
Query: 219 EFVQQESNFPK--DSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFN 276
+ + P D+ D V + ++ SP + E+ LRPGG V T IV G N
Sbjct: 176 YLPLRSEDLPPNMDAFDTVFSMGVLYHRRSPFDHIDELKAALRPGGELVLETLIVPGDEN 235
Query: 277 --LIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCT 318
L P R + + GS + ++R +E CG D +
Sbjct: 236 TVLTPLDRYAQMRNVWFIGS-SLATKRWLE----RCGFEDVRIV 274
>sp|P36571|BIOC_SERMA Malonyl-CoA O-methyltransferase BioC OS=Serratia marcescens GN=bioC
PE=1 SV=1
Length = 255
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 11/100 (11%)
Query: 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENML------KQCYEFVQ---QESNFP 228
G ++DA CG+G FSR++ + G V ALD + ML + + ++ ++ P
Sbjct: 47 GEQLLDAGCGTGYFSRMWRERG--KRVTALDLAPGMLDVARQRQAAHHYLLGDIEQVPLP 104
Query: 229 KDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 268
++D + + S +AE+ RV RPGGV + +T
Sbjct: 105 DAAMDICFSSLVVQWCSDLPAALAELYRVTRPGGVILFST 144
>sp|Q8ZQQ6|BIOC_SALTY Malonyl-CoA O-methyltransferase BioC OS=Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720) GN=bioC PE=3 SV=1
Length = 251
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 72/151 (47%), Gaps = 19/151 (12%)
Query: 179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKDSIDAVHAG 238
+++DA CG G SR + + G S V ALD S ML+Q + Q ++ I+A+
Sbjct: 44 ASVLDAGCGPGRMSRYWRERG--SEVTALDLSLPMLQQARD-RQAAHHYLLADIEAIPHD 100
Query: 239 AAIH--CWSSPST--------GVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNM 288
A + WS+ + ++E+ RV+RPGGV TT + G +P R Q +
Sbjct: 101 AEVFDLAWSNLAVQWCGDLRDALSELYRVVRPGGVVAFTT-LCQGS---LPELRQAWQAV 156
Query: 289 MQISGSYTFLSEREIEDLCRACGLVDFKCTR 319
+ + +FL E I+ R G F+ T+
Sbjct: 157 DNRAHANSFLPEEAIDHALR--GWRAFRHTQ 185
>sp|B8DBZ5|UBIE_LISMH Demethylmenaquinone methyltransferase OS=Listeria monocytogenes
serotype 4a (strain HCC23) GN=ubiE PE=3 SV=1
Length = 237
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 46/100 (46%), Gaps = 15/100 (15%)
Query: 178 GGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQ------------- 223
G N++D CG+ +S + A+ G V LD+SENMLK E V +
Sbjct: 48 GTNVLDVCCGTADWSIMMAEEIGPEGHVTGLDFSENMLKVGREKVTEADLHNVELIHGNA 107
Query: 224 -ESNFPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGG 262
E FP +S D V G + + E+ RVL+PGG
Sbjct: 108 MELPFPDNSFDYVTIGFGLRNVPDYMQVLREMYRVLKPGG 147
>sp|Q89AK7|BIOC_BUCBP Malonyl-CoA O-methyltransferase BioC OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=bioC PE=3 SV=1
Length = 247
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 71/147 (48%), Gaps = 22/147 (14%)
Query: 181 IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQC-------YEFVQQESNFPK-DSI 232
I+DA CG+G FS+ + + G + V ALD+S+NML Y P D+I
Sbjct: 44 ILDAGCGTGWFSKKWRQLG--NTVTALDFSKNMLLTAKNTNSADYYLHADMEQLPICDNI 101
Query: 233 -DAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQI 291
D + ++ + + ++E+ RV +PGG+ V +T I G L F++ R I
Sbjct: 102 FDLSWSNLSLQWCNKFNKAISELCRVTKPGGMVVFST-IAHGS--LYEFNKAYR----TI 154
Query: 292 SGSYT---FLSEREIE-DLCRACGLVD 314
+ SY FLS +I+ C L+D
Sbjct: 155 NSSYQENKFLSINDIKLSCCNKKTLID 181
>sp|A5UEI8|CMOB_HAEIG tRNA (mo5U34)-methyltransferase OS=Haemophilus influenzae (strain
PittGG) GN=cmoB PE=3 SV=1
Length = 321
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 62/150 (41%), Gaps = 29/150 (19%)
Query: 150 WRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDY 209
WR +F W + + +L P+ G I+D CGSG G +VV +D
Sbjct: 104 WRSDFKW----------DRVLPHLAPLQGRTILDVGCGSGYHMWRMVGEGA-KMVVGIDP 152
Query: 210 SENMLKQCYEFVQQ---------------ESNFPKDSIDAVHAGAAIHCWSSPSTGVAEI 254
+E L Q +E V++ E P + D V + ++ SP ++++
Sbjct: 153 TELFLCQ-FEAVRKLLNNDRRANLIPLGIEQMQPLAAFDTVFSMGVLYHRKSPLDHLSQL 211
Query: 255 SRVLRPGGVFVGTTYIVDGPFN--LIPFSR 282
L GG V T +VDG N L+P R
Sbjct: 212 KNQLVKGGELVLETLVVDGDVNTVLVPIDR 241
>sp|P44167|CMOB_HAEIN tRNA (mo5U34)-methyltransferase OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=cmoB PE=1 SV=1
Length = 321
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 62/150 (41%), Gaps = 29/150 (19%)
Query: 150 WRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDY 209
WR +F W + + +L P+ G I+D CGSG G +VV +D
Sbjct: 104 WRSDFKW----------DRVLPHLSPLQGRTILDVGCGSGYHMWRMVGEGA-KMVVGIDP 152
Query: 210 SENMLKQCYEFVQQ---------------ESNFPKDSIDAVHAGAAIHCWSSPSTGVAEI 254
+E L Q +E V++ E P + D V + ++ SP ++++
Sbjct: 153 TELFLCQ-FEAVRKLLNNDRRANLIPLGIEQMQPLAAFDTVFSMGVLYHRKSPLDHLSQL 211
Query: 255 SRVLRPGGVFVGTTYIVDGPFN--LIPFSR 282
L GG V T +VDG N L+P R
Sbjct: 212 KNQLVKGGELVLETLVVDGDINTVLVPADR 241
>sp|A5UBW0|CMOB_HAEIE tRNA (mo5U34)-methyltransferase OS=Haemophilus influenzae (strain
PittEE) GN=cmoB PE=3 SV=1
Length = 321
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 62/150 (41%), Gaps = 29/150 (19%)
Query: 150 WRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDY 209
WR +F W + + +L P+ G I+D CGSG G +VV +D
Sbjct: 104 WRSDFKW----------DRVLPHLSPLQGRTILDVGCGSGYHMWRMVGEGA-KMVVGIDP 152
Query: 210 SENMLKQCYEFVQQ---------------ESNFPKDSIDAVHAGAAIHCWSSPSTGVAEI 254
+E L Q +E V++ E P + D V + ++ SP ++++
Sbjct: 153 TELFLCQ-FEAVRKLLNNDRRANLIPLGIEQMQPLAAFDTVFSMGVLYHRKSPLDHLSQL 211
Query: 255 SRVLRPGGVFVGTTYIVDGPFN--LIPFSR 282
L GG V T +VDG N LIP R
Sbjct: 212 KNQLVKGGELVLETLVVDGDVNTVLIPADR 241
>sp|A3QEQ0|CMOB_SHELP tRNA (mo5U34)-methyltransferase OS=Shewanella loihica (strain ATCC
BAA-1088 / PV-4) GN=cmoB PE=3 SV=1
Length = 330
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 74/186 (39%), Gaps = 34/186 (18%)
Query: 150 WRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDY 209
WR ++ W E ++ ++ P+ ++D CGSG G VV +D
Sbjct: 105 WRSDWKW----------ERVQPHISPLKNRTVLDVGCGSGYHMWRMLGDGA-KRVVGIDP 153
Query: 210 SENMLKQCYEFVQQ---------------ESNFPKDSIDAVHAGAAIHCWSSPSTGVAEI 254
S L Q +E V++ E P D+ D V + ++ SP + ++
Sbjct: 154 SPLFLCQ-FEAVKRLAGNDHPVHLLPLGIEQLPPLDAFDTVFSMGVLYHRRSPIDHLLQL 212
Query: 255 SRVLRPGGVFVGTTYIVDGPFN--LIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGL 312
LR GG V T +VDG N L+P R + N + + S + +E +
Sbjct: 213 RDQLRTGGELVLETLVVDGDENTVLVPGERYGKMNNV-----WFLPSAKALEAWLKKADF 267
Query: 313 VDFKCT 318
VD +C
Sbjct: 268 VDVRCV 273
>sp|Q4QK61|CMOB_HAEI8 tRNA (mo5U34)-methyltransferase OS=Haemophilus influenzae (strain
86-028NP) GN=cmoB PE=3 SV=1
Length = 321
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 62/150 (41%), Gaps = 29/150 (19%)
Query: 150 WRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDY 209
WR +F W + + +L P+ G I+D CGSG G +VV +D
Sbjct: 104 WRSDFKW----------DRVLPHLAPLQGRTILDVGCGSGYHMWRMVGEGA-KMVVGIDP 152
Query: 210 SENMLKQCYEFVQQ---------------ESNFPKDSIDAVHAGAAIHCWSSPSTGVAEI 254
+E L Q +E V++ E P + D V + ++ SP ++++
Sbjct: 153 TELFLCQ-FEAVRKLLNNDRRANLIPLGIEQMQPLAAFDTVFSMGVLYHRKSPLDHLSQL 211
Query: 255 SRVLRPGGVFVGTTYIVDGPFN--LIPFSR 282
L GG V T +VDG N LIP R
Sbjct: 212 KNQLVKGGELVLETLVVDGDVNTVLIPADR 241
>sp|Q3SM81|UBIE_THIDA Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Thiobacillus denitrificans (strain ATCC 25259)
GN=ubiE PE=3 SV=1
Length = 244
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 69/158 (43%), Gaps = 23/158 (14%)
Query: 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQ 222
K F + + L+P G ++D + G+ +R+F K G V+ D + +ML++ + +
Sbjct: 48 KRFAVAQAGLRP--GMKVLDVAGGTADLTRLFLKEVGASGTVLLTDINFSMLREGRDRML 105
Query: 223 QESN-------------FPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 269
E FP D D V + + +AE+ RVLRPGG + +
Sbjct: 106 NEGRTPPAVQCDGERLPFPDDYFDCVSVAFGLRNMTHKDQALAEMHRVLRPGGRLLVLEF 165
Query: 270 I-----VDGPFNLIPFSR--LLRQNMMQISGSYTFLSE 300
++ ++L F L+ + + + SY +L+E
Sbjct: 166 SKVWKPLEAAYDLYSFKLLPLMGRLVANDAASYQYLAE 203
>sp|Q6ANL3|UBIE_DESPS Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Desulfotalea psychrophila (strain LSv54 / DSM 12343)
GN=ubiE PE=3 SV=1
Length = 246
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 88/222 (39%), Gaps = 50/222 (22%)
Query: 143 SFIYERGWRQNFVWGGFPGPEKEFELMKG---YLKPVL--------------------GG 179
S E R+ FV PG EK F+ + G + V+ G
Sbjct: 7 SLFLEMKCREEFVLSKGPGVEKMFDAIAGRYDLMNKVMTMGQDQRWRRFVVAKAGDPGAG 66
Query: 180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE-FVQQ-------ESN---FP 228
++D + G+G + + +S + V D+S NML++ + F Q ++N F
Sbjct: 67 QVLDLATGTGDIAALMHRSYPRAQVTGGDFSRNMLEEAKKRFAGQGIDWQVCDANKLPFA 126
Query: 229 KDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSR------ 282
++ +AV G + S+ +AE+ RVL+PGG V + PF +
Sbjct: 127 DNTFEAVTFGYLLRNVDDASSVLAEVYRVLKPGGRCVCLDTTPPAKNIIYPFVQFYFRYG 186
Query: 283 --LLRQNMMQISGSYTFLSEREIE--------DLCRACGLVD 314
LL + + +Y +LS +E DL R G VD
Sbjct: 187 IPLLGRMIAADEAAYAYLSGSTMEFHSAEVLADLFRGAGFVD 228
>sp|Q7CH67|BIOC_YERPE Malonyl-CoA O-methyltransferase BioC OS=Yersinia pestis GN=bioC
PE=3 SV=1
Length = 267
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 63/142 (44%), Gaps = 25/142 (17%)
Query: 181 IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN-----------FPK 229
++DA CG+G FS+ + G V+ALD + ML Y QQ ++ P
Sbjct: 62 VLDAGCGTGHFSQHWRLLG--KRVIALDLAAGMLD--YARQQQVADDYLLGDIEHIPLPD 117
Query: 230 DSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMM 289
S+D + A+ S ++E RV RPGG+ + +T + +G + L Q
Sbjct: 118 QSVDICFSNLAVQWCSDLGAALSEFYRVTRPGGIILFST-LAEGSLD------ELGQAWQ 170
Query: 290 QISGSY---TFLSEREIEDLCR 308
Q+ G FL + I+ C+
Sbjct: 171 QVDGQRHVNDFLPLQHIQTACQ 192
>sp|D8MPW4|BIOC_ERWBE Malonyl-CoA O-methyltransferase BioC OS=Erwinia billingiae (strain
Eb661) GN=bioC PE=3 SV=1
Length = 251
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 52/120 (43%), Gaps = 11/120 (9%)
Query: 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQ--------CY 218
E + Y G ++DA CG G FS+ + +G + V ALD S ML Q CY
Sbjct: 32 EELASYATRRQGQKVLDAGCGPGWFSQHWRAAG--NHVTALDLSAEMLVQAQALHTADCY 89
Query: 219 EFVQQES-NFPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNL 277
+ E+ F S D + A+ S S + E+ RV PGG + +T D L
Sbjct: 90 QPGDIEALPFSDASFDLCWSNLAVQWCSDLSLALTELYRVTSPGGQVLFSTLSADSLHEL 149
>sp|Q4L6H3|UBIE_STAHJ Demethylmenaquinone methyltransferase OS=Staphylococcus
haemolyticus (strain JCSC1435) GN=ubiE PE=3 SV=1
Length = 239
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 20/120 (16%)
Query: 166 FELMKGYLKPVL-------GGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQC 217
FE K + K V+ G +D CG+ ++ +K+ G V LD+SENML+
Sbjct: 31 FEQHKVWRKHVMKDMHVKVGSKALDVCCGTADWTIALSKAVGAHGEVTGLDFSENMLEVG 90
Query: 218 YEFVQQESN------------FPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV 265
E + +N F +S D V G + + E++RVL+PGG+ V
Sbjct: 91 KEKTKHMNNIHLVHGDAMNLPFEDNSFDYVTIGFGLRNVPDYLVALKEMNRVLKPGGMIV 150
>sp|A4Y6S2|CMOB_SHEPC tRNA (mo5U34)-methyltransferase OS=Shewanella putrefaciens (strain
CN-32 / ATCC BAA-453) GN=cmoB PE=3 SV=1
Length = 332
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 72/186 (38%), Gaps = 34/186 (18%)
Query: 150 WRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDY 209
WR ++ W + +K ++ P+ ++D CGSG SG VV +D
Sbjct: 105 WRSDWKW----------DRVKQHISPLKNRTVLDVGCGSGYHMWRMLGSGA-KRVVGIDP 153
Query: 210 SENMLKQCYEFVQQ---------------ESNFPKDSIDAVHAGAAIHCWSSPSTGVAEI 254
S L Q +E V++ E P D+ D V + ++ SP + ++
Sbjct: 154 SPLFLCQ-FEAVKRLAGPHHPVHLLPLGIEELPPLDAFDTVFSMGVLYHRRSPIDHLLQL 212
Query: 255 SRVLRPGGVFVGTTYIVDGPFN--LIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGL 312
LR GG V T ++DG N L+P R + N + S L + C
Sbjct: 213 RDQLRTGGELVLETLVIDGDENAVLVPQDRYGKMNNVWFIPSVAALML-----WLKKCDF 267
Query: 313 VDFKCT 318
D +C
Sbjct: 268 TDIRCV 273
>sp|A9L3I4|CMOB_SHEB9 tRNA (mo5U34)-methyltransferase OS=Shewanella baltica (strain
OS195) GN=cmoB PE=3 SV=1
Length = 331
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 72/186 (38%), Gaps = 34/186 (18%)
Query: 150 WRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDY 209
WR ++ W + +K ++ P+ ++D CGSG SG VV +D
Sbjct: 105 WRSDWKW----------DRVKQHISPLKNRTVLDVGCGSGYHMWRMLGSGA-KRVVGIDP 153
Query: 210 SENMLKQCYEFVQQ---------------ESNFPKDSIDAVHAGAAIHCWSSPSTGVAEI 254
S L Q +E V++ E P D+ D V + ++ SP + ++
Sbjct: 154 SPLFLCQ-FEAVKRLAGTHHPVHLLPLGIEELPPLDAFDTVFSMGVLYHRRSPIDHLLQL 212
Query: 255 SRVLRPGGVFVGTTYIVDGPFN--LIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGL 312
LR GG V T ++DG N L+P R + N + S L + C
Sbjct: 213 RDQLRTGGELVLETLVIDGDENAVLVPQDRYGKMNNVWFIPSVAALML-----WLKKCDF 267
Query: 313 VDFKCT 318
D +C
Sbjct: 268 TDIRCV 273
>sp|A6WNQ9|CMOB_SHEB8 tRNA (mo5U34)-methyltransferase OS=Shewanella baltica (strain
OS185) GN=cmoB PE=3 SV=1
Length = 331
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 72/186 (38%), Gaps = 34/186 (18%)
Query: 150 WRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDY 209
WR ++ W + +K ++ P+ ++D CGSG SG VV +D
Sbjct: 105 WRSDWKW----------DRVKQHISPLKNRTVLDVGCGSGYHMWRMLGSGA-KRVVGIDP 153
Query: 210 SENMLKQCYEFVQQ---------------ESNFPKDSIDAVHAGAAIHCWSSPSTGVAEI 254
S L Q +E V++ E P D+ D V + ++ SP + ++
Sbjct: 154 SPLFLCQ-FEAVKRLAGTHHPVHLLPLGIEELPPLDAFDTVFSMGVLYHRRSPIDHLLQL 212
Query: 255 SRVLRPGGVFVGTTYIVDGPFN--LIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGL 312
LR GG V T ++DG N L+P R + N + S L + C
Sbjct: 213 RDQLRTGGELVLETLVIDGDENAVLVPQDRYGKMNNVWFIPSVAALML-----WLKKCDF 267
Query: 313 VDFKCT 318
D +C
Sbjct: 268 TDIRCV 273
>sp|B8EA68|CMOB_SHEB2 tRNA (mo5U34)-methyltransferase OS=Shewanella baltica (strain
OS223) GN=cmoB PE=3 SV=1
Length = 331
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 72/186 (38%), Gaps = 34/186 (18%)
Query: 150 WRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDY 209
WR ++ W + +K ++ P+ ++D CGSG SG VV +D
Sbjct: 105 WRSDWKW----------DRVKQHISPLKNRTVLDVGCGSGYHMWRMLGSGA-KRVVGIDP 153
Query: 210 SENMLKQCYEFVQQ---------------ESNFPKDSIDAVHAGAAIHCWSSPSTGVAEI 254
S L Q +E V++ E P D+ D V + ++ SP + ++
Sbjct: 154 SPLFLCQ-FEAVKRLAGTHHPVHLLPLGIEELPPLDAFDTVFSMGVLYHRRSPIDHLLQL 212
Query: 255 SRVLRPGGVFVGTTYIVDGPFN--LIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGL 312
LR GG V T ++DG N L+P R + N + S L + C
Sbjct: 213 RDQLRTGGELVLETLVIDGDENAVLVPQDRYGKMNNVWFIPSVAALML-----WLKKCDF 267
Query: 313 VDFKCT 318
D +C
Sbjct: 268 TDIRCV 273
>sp|A3D474|CMOB_SHEB5 tRNA (mo5U34)-methyltransferase OS=Shewanella baltica (strain OS155
/ ATCC BAA-1091) GN=cmoB PE=3 SV=1
Length = 331
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 72/186 (38%), Gaps = 34/186 (18%)
Query: 150 WRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDY 209
WR ++ W + +K ++ P+ ++D CGSG SG VV +D
Sbjct: 105 WRSDWKW----------DRVKQHISPLKNRTVLDVGCGSGYHMWRMLGSGA-KRVVGIDP 153
Query: 210 SENMLKQCYEFVQQ---------------ESNFPKDSIDAVHAGAAIHCWSSPSTGVAEI 254
S L Q +E V++ E P D+ D V + ++ SP + ++
Sbjct: 154 SPLFLCQ-FEAVKRLAGTHHPVHLLPLGIEELPPLDAFDTVFSMGVLYHRRSPIDHLLQL 212
Query: 255 SRVLRPGGVFVGTTYIVDGPFN--LIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGL 312
LR GG V T ++DG N L+P R + N + S L + C
Sbjct: 213 RDQLRTGGELVLETLVIDGDENAVLVPQDRYGKMNNVWFIPSVAALML-----WLKKCDF 267
Query: 313 VDFKCT 318
D +C
Sbjct: 268 TDIRCV 273
>sp|A4G5P1|BIOC_HERAR Malonyl-CoA O-methyltransferase BioC OS=Herminiimonas
arsenicoxydans GN=bioC PE=3 SV=1
Length = 260
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 62/154 (40%), Gaps = 24/154 (15%)
Query: 181 IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFV-------QQESNFPKDSID 233
++D CG+G S + + +L++A D S M++Q + ++ F K D
Sbjct: 46 VLDGGCGTGTSSALLTRHWPDALLLACDLSPEMVRQAHARQLTAVCGDLEQLPFSKACFD 105
Query: 234 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV------GTTYIVDGPFNLIPFSRLLRQN 287
V + + W P E+ RVL+ GG + G+ + ++ F I R +
Sbjct: 106 VVWSSLVLQ-WCQPQLAYPELQRVLKHGGRLLFSTLTSGSLHELESTFGEIDRHRRV--- 161
Query: 288 MMQISGSYTFLSEREIEDLCRACGLVDFKCTRNR 321
F SE+++ D A G +C R
Sbjct: 162 -------LPFASEQQVVDALYAAGFEHVQCQAER 188
>sp|Q2SN12|UBIE_HAHCH Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Hahella chejuensis (strain KCTC 2396) GN=ubiE PE=3
SV=1
Length = 249
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 66/150 (44%), Gaps = 30/150 (20%)
Query: 178 GGNIIDASCGSG----LFSRIFAKSGLFSLVVALDYSENMLK------------QCYEFV 221
G +++D + G+G FSR+ SG VV D + +ML+ EFV
Sbjct: 62 GASVLDIAGGTGDLTKKFSRLVGPSGK---VVLADINASMLQVGRNQLLDHGYGDNIEFV 118
Query: 222 QQESN---FPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV------GTTYIVD 272
Q + FP +S D V + + + E+ RVLRPGG + T IV
Sbjct: 119 QANAEALPFPDNSFDCVSIAFGLRNVTDKDQALREMQRVLRPGGRLLVLEFSKPTNPIVS 178
Query: 273 GPFNLIPFSR--LLRQNMMQISGSYTFLSE 300
+++ FS L+ + Q S SY +L+E
Sbjct: 179 KAYDVYSFSALPLMGSLVAQDSESYRYLAE 208
>sp|Q2SBD7|BIOC_HAHCH Malonyl-CoA O-methyltransferase BioC OS=Hahella chejuensis (strain
KCTC 2396) GN=bioC PE=3 SV=1
Length = 279
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 58/147 (39%), Gaps = 21/147 (14%)
Query: 180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLK----------QCYEFVQQES-NFP 228
+IID CG+G + S + + A D S M++ + + ES
Sbjct: 65 DIIDVGCGTGWLTHRLKNSFPEARLCAYDLSPGMIEYALAHHDNVAEIWAVADMESLPVA 124
Query: 229 KDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNM 288
S D V + A+ P AE SRVLRPGG + +T + F L Q
Sbjct: 125 NASQDLVFSNMAMQWLDDPRAWFAEASRVLRPGGRLICSTLLTQTLFE-------LEQAW 177
Query: 289 MQISGSY---TFLSEREIEDLCRACGL 312
+ G FLS ++ + +CGL
Sbjct: 178 HGVDGGRHVNRFLSAEQVAEAAVSCGL 204
>sp|B9DNV5|UBIE_STACT Demethylmenaquinone methyltransferase OS=Staphylococcus carnosus
(strain TM300) GN=ubiE PE=3 SV=1
Length = 241
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 53/120 (44%), Gaps = 20/120 (16%)
Query: 166 FELMKGYLKPVL-------GGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQC 217
FE K + K V+ G +D CG+ ++ +K+ G V+ LD+SENMLK
Sbjct: 31 FEQHKVWRKRVMKSMQVKKGSKALDVCCGTADWTIALSKAVGPSGEVIGLDFSENMLKVG 90
Query: 218 YEFVQQESN------------FPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV 265
E + SN F + D V G + + E++RVL+PGG+ V
Sbjct: 91 EEKTKNMSNIQLVQGDAMDLPFDDNEFDYVTIGFGLRNIPDYVIALKEMNRVLKPGGMAV 150
>sp|A0PQX0|PHMT1_MYCUA Phthiotriol/phenolphthiotriol dimycocerosates methyltransferase 1
OS=Mycobacterium ulcerans (strain Agy99) GN=MUL_2377
PE=3 SV=1
Length = 271
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 11/101 (10%)
Query: 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQC--------YEFVQQESN--- 226
G +++ SCG G + ++ + LD + +K C +FV+ ++
Sbjct: 81 GKRVLEVSCGHGGGASYLTRTLHPASYTGLDLNRAGIKLCQRRHNLPGLDFVRGDAENLP 140
Query: 227 FPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGT 267
F +S D V A HC+ S +AE+ RVLRPGG + T
Sbjct: 141 FEDESFDVVLKVEASHCYPHFSRFLAEVVRVLRPGGYLLYT 181
>sp|Q67LE6|UBIE_SYMTH Demethylmenaquinone methyltransferase OS=Symbiobacterium
thermophilum (strain T / IAM 14863) GN=ubiE PE=3 SV=1
Length = 251
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 19/119 (15%)
Query: 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRI-FAKSGLFSLVVALDYSENMLKQCYEFV 221
+EF + + + +P G +I+D +CG+G + + A+ V+ +D SE ML+ V
Sbjct: 44 HREF-VAQTHFRP--GDHILDVACGTGDLTLLDAAQVAPDGKVIGVDISEGMLEVGRRRV 100
Query: 222 Q----------QESN-----FPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV 265
Q N FP ++ D V G A+ +S ++EI RVL+PGG F+
Sbjct: 101 AASPYKDLITLQLGNAMDLPFPDNTFDGVTMGWAMRNVASIPRTLSEIYRVLKPGGRFI 159
>sp|Q8A005|UBIE_BACTN Demethylmenaquinone methyltransferase OS=Bacteroides
thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC
10582 / E50 / VPI-5482) GN=ubiE PE=3 SV=1
Length = 245
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 57/139 (41%), Gaps = 30/139 (21%)
Query: 142 MSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF 201
+S +R WR+ + +L+P +I+D + G+G F+ + +
Sbjct: 39 LSLGIDRSWRRKAI---------------AWLRPFRPQHIMDVATGTGDFAILACRELNP 83
Query: 202 SLVVALDYSENMLKQCYEFVQQES---------------NFPKDSIDAVHAGAAIHCWSS 246
++ D SE M+ E V++E +F + DA+ I +
Sbjct: 84 DELIGTDISEGMMNVGREKVKKEGLSDKISFAREDCTSLSFADNRFDAITVAFGIRNFED 143
Query: 247 PSTGVAEISRVLRPGGVFV 265
G++E+ RVL+PGG V
Sbjct: 144 LDKGLSEMCRVLKPGGHLV 162
>sp|C4LL93|UBIE_CORK4 Demethylmenaquinone methyltransferase OS=Corynebacterium
kroppenstedtii (strain DSM 44385 / CCUG 35717) GN=ubiE
PE=3 SV=1
Length = 229
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 9/97 (9%)
Query: 173 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLK----QCYEFVQQES-NF 227
L P G ++D + G+G+ + +KSG +LVV D+S MLK + V + N
Sbjct: 47 LDPKPGEKVVDLAAGTGVSTAELSKSG--ALVVGCDFSLGMLKAGRHRNVPLVAGDGLNL 104
Query: 228 P--KDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGG 262
P ++ DA + + + G+ EI+RV++PGG
Sbjct: 105 PFADNTFDAATISFGLRNFGDTAAGLREIARVVKPGG 141
>sp|Q081N2|CMOB_SHEFN tRNA (mo5U34)-methyltransferase OS=Shewanella frigidimarina (strain
NCIMB 400) GN=cmoB PE=3 SV=1
Length = 330
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 73/186 (39%), Gaps = 34/186 (18%)
Query: 150 WRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDY 209
WR ++ W + +K ++ P+ ++D CGSG G + VV +D
Sbjct: 105 WRSDWKW----------DRVKNFISPLKNRTVLDVGCGSGYHMWRMLGDGA-TRVVGIDP 153
Query: 210 SENMLKQCYEFVQQ---------------ESNFPKDSIDAVHAGAAIHCWSSPSTGVAEI 254
S L Q +E +++ E P D+ D V + ++ SP + ++
Sbjct: 154 SPLFLCQ-FEAIKRVAGNQHPVYLLPLGIEELPPLDAFDTVFSMGVLYHRRSPIDHLLQL 212
Query: 255 SRVLRPGGVFVGTTYIVDGPFN--LIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGL 312
LR GG V T ++DG N L+P R + N + S L + C
Sbjct: 213 RDQLRVGGELVLETLVIDGDENAVLVPQDRYGKMNNVWFIPSVAALML-----WLKKCEF 267
Query: 313 VDFKCT 318
+D +C
Sbjct: 268 IDIRCV 273
>sp|E4QJB8|BIOC_METS6 Malonyl-CoA O-methyltransferase BioC OS=Methylovorus sp. (strain
MP688) GN=bioC PE=3 SV=1
Length = 296
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 63/148 (42%), Gaps = 23/148 (15%)
Query: 181 IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQ---CYEFVQQESNFPKD------- 230
++DA CG+G S + S V++LD + MLK+ VQ+ F +
Sbjct: 52 VLDAGCGTGHASAALSARYRQSQVISLDIAMGMLKKTMAARSLVQRLFGFDRRHAVCADI 111
Query: 231 --------SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSR 282
SID V + AI + EI RVL+P G+ + +T GP L
Sbjct: 112 ERLPLAAASIDLVWSNMAIQWCNDLDQAFGEIQRVLKPEGLLMFSTL---GPDTLKELRA 168
Query: 283 LLRQNMMQISGSYTFLSEREIED-LCRA 309
RQ+ ++ S F+ +I D L RA
Sbjct: 169 ATRQDNTHVTVS-RFIDMHDIGDALVRA 195
>sp|Q50464|PHMT_MYCTU Phthiotriol/phenolphthiotriol dimycocerosates methyltransferase
OS=Mycobacterium tuberculosis GN=Rv2952 PE=1 SV=1
Length = 270
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 11/98 (11%)
Query: 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQC--------YEFVQQESN--- 226
G +++ SCG G + ++ + LD ++ +K C +FV+ ++
Sbjct: 81 GKQVLEVSCGHGGGASYLTRTLHPASYTGLDLNQAGIKLCKKRHRLPGLDFVRGDAENLP 140
Query: 227 FPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVF 264
F +S D V A HC+ +AE+ RVLRPGG F
Sbjct: 141 FDDESFDVVLNVEASHCYPHFRRFLAEVVRVLRPGGYF 178
>sp|A5U6W0|PHMT_MYCTA Phthiotriol/phenolphthiotriol dimycocerosates methyltransferase
OS=Mycobacterium tuberculosis (strain ATCC 25177 /
H37Ra) GN=MRA_2979 PE=3 SV=1
Length = 270
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 11/98 (11%)
Query: 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQC--------YEFVQQESN--- 226
G +++ SCG G + ++ + LD ++ +K C +FV+ ++
Sbjct: 81 GKQVLEVSCGHGGGASYLTRTLHPASYTGLDLNQAGIKLCKKRHRLPGLDFVRGDAENLP 140
Query: 227 FPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVF 264
F +S D V A HC+ +AE+ RVLRPGG F
Sbjct: 141 FDDESFDVVLNVEASHCYPHFRRFLAEVVRVLRPGGYF 178
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 121,224,322
Number of Sequences: 539616
Number of extensions: 5030765
Number of successful extensions: 13156
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 347
Number of HSP's that attempted gapping in prelim test: 12990
Number of HSP's gapped (non-prelim): 385
length of query: 334
length of database: 191,569,459
effective HSP length: 118
effective length of query: 216
effective length of database: 127,894,771
effective search space: 27625270536
effective search space used: 27625270536
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)